Citrus Sinensis ID: 043930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP
Secondary Structure (PSIPRED)
cHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccccEEEEEEcccccccEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccEEEEcccccccccccccccccccEEEEEcccccccccccccccccccHHHccccccccccccccccccccccEEEEcccccccccccccccccccccEEEcccccccccccHHHccccccccEEEEcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEEHcccccccccHHHcccccccEEEcccccccccHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccEEEEEccccccccccHHHccccEEEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccccEEEEcccccccccccccHcccccccEEEcccccccccccHHHccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
AFIARrqalslpkdgklpndfedqydlkdktfESHRMKMAYVGLQAFKKaiysdpynhtenwvgtdvcqyngvlcdVFIDNQERFVAMIDLNKAeiaahlppeMGWLLDLIYFHAntnrlcgiipetfanmhrleefdvsnnrlvgpfptvALTWKRNLYldlrfnnfegelppelfqtgLDIIflnhnwfrgsipetIGESLARYIVLSsnnftgclprsiGYMKELQEIILMEnqlsgclpseigsgeyknltvfdirsnkfhgsvpqsfanlnnimrldisdnmltgfvsadicklphllnftfsnnFFQGMAMECisgsrddvyfeekgnCLAEmeyqklptecypvvskpvdcskdecswggsppstpsaptpkpststpaqepktpapapptpslpsppvasptpptwewnrvprhkvppiiveppkpssptpttmppkqeppplvqspppsspppvsypppvrsapppspmpspsspppaqstpqpspppvsypppvrsppppspmpspsspppvysppppspppvsypppvrssppptpslsppppvqsppppspppvlypppvrspppssptpspspsppppiqsppptsppppvgsppppiqsppppvqsppppspppp
Flexible Loop (DISEMBL)
afiarrqalslpkdgklpndfedQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSppppvqsppppspppp
Low Complexity Region (SEG)
AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDECSWGGsppstpsaptpkpststpaqepktpapapptpslpsppvasptpptWEWNRVPRHkvppiiveppkpssptpttmppkqeppplvqspppsspppvsypppvrsapppspmpspsspppaqstpqpspppvsypppvrsppppspmpspsspppvysppppspppvsypppvrssppptpslsppppvqsppppspppvlypppvrspppssptpspspsppppiqsppptsppppvgsppppiqsppppvqsppppspppp
Disordered region (IsUnstruct)
*********************************SHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDC*******************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**IARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNC***********ECYPVVSKPVDCSKDECSWGG**********************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVD******************************************************PTWEWNRVPRHKVPPIIVEPPK*********************************************************************************************************************************PPPVLYPPP**********************************************************
Disordered Region (DISPRO)
AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPK**PPPLVQ*****SPPPVSYPPPVRSAPPPS************S*PQPSPPPVSYPPPVRSPPPPSP****SSPPPVYSPPPPSPPPVS******SSP******************************************************TSPPPPVGSP*PPIQSP*PPVQSPP*P*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	629	2.2.26 [Sep-21-2011]
O81765	699	Pollen-specific leucine-r	yes	no	0.710	0.639	0.486	1e-120
Q9LJ64	956	Pollen-specific leucine-r	no	no	0.573	0.377	0.534	1e-119
Q9XIL9	727	Pollen-specific leucine-r	no	no	0.621	0.537	0.493	1e-114
Q9XIB6	847	Pollen-specific leucine-r	no	no	0.777	0.577	0.446	1e-108
O48809	786	Leucine-rich repeat exten	no	no	0.535	0.428	0.469	6e-84
Q9T0K5	760	Leucine-rich repeat exten	no	no	0.559	0.463	0.440	8e-84
Q9LHF1	494	Leucine-rich repeat exten	no	no	0.562	0.716	0.439	3e-83
O65375	744	Leucine-rich repeat exten	no	no	0.553	0.467	0.433	4e-83
Q9SN46	857	Leucine-rich repeat exten	no	no	0.553	0.406	0.448	4e-81
Q4PSE6	433	Leucine-rich repeat exten	no	no	0.515	0.748	0.434	2e-74

>sp|O81765|PLRX4_ARATH Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=PEX4 PE=2 SV=1

 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/469 (48%), Positives = 302/469 (64%), Gaps = 22/469 (4%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           AFI +RQ L+LP +G+LP+D E + DLK  TF + R+K AY+ LQA+KKAI+SDP+N T 
Sbjct: 51  AFIVQRQLLTLPDNGELPDDIEYEVDLK-ATFANTRLKRAYIALQAWKKAIFSDPFNTTG 109

Query: 61  NWVGTDVCQYNGVLCDVFIDNQE-RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NW G  VC Y GV+C   +D+ +   VA +DLN A+IA HLP E+G + D+  FH N+NR
Sbjct: 110 NWHGPHVCGYTGVVCAPALDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNR 169

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CGIIP++F  +  + EFDVSNNR VGPFP V L+W    Y DLRFN+FEG++PPELF+ 
Sbjct: 170 FCGIIPKSFEKLKLMHEFDVSNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKK 229

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD IFLN N F   IPE++GES A  +  ++N FTGC+P+SIG MK L EI+ M+N L 
Sbjct: 230 ELDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEIVFMDNDLG 289

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GC PSEI  G+  N+TVFD   N F G +P SF  L ++  +DIS N LTG V  +IC+L
Sbjct: 290 GCFPSEI--GKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHNICQL 347

Query: 300 PHLLNFTFSNNFFQGMAMECI-SGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDC 358
           P+L+N T+S N+F G    C+  GSR ++  ++  NCLA    Q+   EC  V+++PVDC
Sbjct: 348 PNLVNLTYSYNYFSGQGGSCVPGGSRKEIALDDTRNCLASRPEQRSAQECAVVINRPVDC 407

Query: 359 SKDECSWGGSPPSTPS---APTPKPSTSTPAQEPKTPAPAPPTPS---LPSPPVASPTP- 411
           SKD+C+ G S PS PS    PTP P  +TP  +P TP P  P      +P+ PV  P+P 
Sbjct: 408 SKDKCAGGSSTPSKPSPVHKPTPVP--TTPVHKP-TPVPTTPVQKPSPVPTTPVQKPSPV 464

Query: 412 PTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSP 460
           PT      P H+  P++  P    SP P+   P Q+P P  +SP P  P
Sbjct: 465 PT-----TPVHEPSPVLATPVDKPSPVPSR--PVQKPQPPKESPQPDDP 506

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ64|PLRX1_ARATH Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1

 Score =  430 bits (1106), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 195/365 (53%), Positives = 256/365 (70%), Gaps = 4/365 (1%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           +F+ RRQ L+L ++G LP+D E + DL D  F ++R+K AY+ LQA+KKA YSDP+N   
Sbjct: 37  SFLTRRQLLALSENGDLPDDIEYEVDL-DLKFANNRLKRAYIALQAWKKAFYSDPFNTAA 95

Query: 61  NWVGTDVCQYNGVLCDVFIDN-QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NWVG DVC Y GV C   +D+     VA IDLN A+IA +LPPE+G L D+  FH N+NR
Sbjct: 96  NWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHADIAGYLPPELGLLTDVALFHVNSNR 155

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CG+IP++ + +  + EFDVSNNR VGPFPTVAL+W    +LD+R+N+FEG+LPPE+F  
Sbjct: 156 FCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDFEGKLPPEIFDK 215

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD IFLN+N F  +IPETIG+S A  +  + N F+GC+P++IG MK L EI+ + N LS
Sbjct: 216 DLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQMKNLNEIVFIGNNLS 275

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GCLP+EIGS    N+TVFD  SN F GS+P + + L N+ ++D S N  TGFV+ +ICKL
Sbjct: 276 GCLPNEIGS--LNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDNICKL 333

Query: 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
           P L NFTFS NFF G A  C+ GS  +  F++  NCL     QK   EC PVVS+PVDCS
Sbjct: 334 PKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDTSNCLQNRPNQKSAKECLPVVSRPVDCS 393

Query: 360 KDECS 364
           KD+C+
Sbjct: 394 KDKCA 398

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIL9|PLRX3_ARATH Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=PEX3 PE=2 SV=1

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/397 (49%), Positives = 270/397 (68%), Gaps = 6/397 (1%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           +FIA+RQ L+LP++G+LP+D E + DLK  TF +HR+K AY+ LQA+KKA+YSDP+N T 
Sbjct: 25  SFIAQRQLLTLPENGELPDDIEYEVDLK-VTFANHRLKRAYIALQAWKKAVYSDPFNTTG 83

Query: 61  NWVGTDVCQYNGVLCDVFIDN-QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NW G  VC Y GV C   +D+     VA +DLN A+IA HLP E+G + D+  FH N+NR
Sbjct: 84  NWHGPHVCGYTGVFCAPALDDPDVAVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNR 143

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CGIIP++F  +  + EFDVSNNR VGPFP+V L+W    ++D+R+N+FEG++PPELF+ 
Sbjct: 144 FCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYNDFEGQVPPELFKK 203

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD IFLN+N F  +IP+++GES A  +  + N F+GC+PRSIG MK L EII  +N L 
Sbjct: 204 DLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKNLNEIIFKDNSLG 263

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GC PSEI  G+  N+ VFD   N F G +P SF  L ++   DIS N LTGF+  +ICKL
Sbjct: 264 GCFPSEI--GKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPENICKL 321

Query: 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
           P L+N T++ N+F G    C+ GS+  +  ++  NCL +   Q+   EC  V+S+PVDCS
Sbjct: 322 PKLVNLTYAYNYFNGQGDSCVPGSQKQIALDDTRNCLPDRPKQRSAKECAVVISRPVDCS 381

Query: 360 KDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAP 396
           KD+C+ GGS  +TPS  +P P  + P  +P+ P  +P
Sbjct: 382 KDKCA-GGSSQATPSK-SPSPVPTRPVHKPQPPKESP 416

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIB6|PLRX2_ARATH Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/511 (44%), Positives = 291/511 (56%), Gaps = 22/511 (4%)

Query: 10  SLPKDGKLPNDFEDQYDLKDKT-----FESHRMKMAYVGLQAFKKAIYSDPYNHTENWVG 64
           S P++  L  D E +    +K      FE+ R+K AY+ LQA+KKAIYSDP+  T NWVG
Sbjct: 27  SFPENADLTKDLEQKCFSINKVDPNLKFENDRLKRAYIALQAWKKAIYSDPFKTTANWVG 86

Query: 65  TDVCQYNGVLCD-VFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGI 123
           +DVC YNGV C     D+    VA +DLN A+IA HLPPE+G + DL  FH N+NR CGI
Sbjct: 87  SDVCSYNGVYCAPALDDDSLTVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNRFCGI 146

Query: 124 IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDI 183
           IP++ + +  + EFDVSNNR VG FP V+L+W    +LDLR+N FEG LP E+F   LD 
Sbjct: 147 IPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEFEGSLPSEIFDKDLDA 206

Query: 184 IFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243
           IFLN+N F   IP TIG+S A  +  ++N F+GC+P+SIG MK L EI+   N L+GC P
Sbjct: 207 IFLNNNRFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNMKNLNEIVFTGNNLTGCFP 266

Query: 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLL 303
           +EIG     N+TVFD   N F GS+P + + L ++ +LD+S N LTGFV    CKLP+L 
Sbjct: 267 NEIGL--LNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLD 324

Query: 304 NFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDEC 363
           +F FS NFF G A  C+ G  +   F++  NCL     QK   +C PVVS+PVDCSKD+C
Sbjct: 325 SFKFSYNFFNGEAESCVPGRNNGKQFDDTNNCLQNRPSQKPAKQCLPVVSRPVDCSKDKC 384

Query: 364 SWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHK 423
           S G +  S+PS   P+ S          P P+ P P +P P  +S  P T +    P  K
Sbjct: 385 SGGSNGGSSPSPNPPRTS---------EPKPSKPEPVMPKPSDSS-KPETPKTPEQPSPK 434

Query: 424 VPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPM----P 479
             P   E PKP  P      PKQ+  P  Q   P   P    P P  S  P  P      
Sbjct: 435 PQPPKHESPKPEEPENKHELPKQKESPKPQPSKPEDSPKPEQPKPEESPKPEQPQIPEPT 494

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPP 510
            P SPP     P P  P  + P   R  PPP
Sbjct: 495 KPVSPPNEAQGPTPDDPYDASPVKNRRSPPP 525

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|O48809|LRX2_ARATH Leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=LRX2 PE=1 SV=1

 Score =  312 bits (799), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 160/341 (46%), Positives = 219/341 (64%), Gaps = 4/341 (1%)

Query: 32  FESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDN-QERFVAMID 90
           FE+  ++ AY+ LQ++K+AI+SDP+N T NW G+DVC YNG+ C     + + R VA ID
Sbjct: 48  FENPSLRQAYIALQSWKQAIFSDPFNFTANWNGSDVCSYNGIFCAPSPSSPKTRVVAGID 107

Query: 91  LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPT 150
           LN A++A +LP E+G L DL  FH N+NR CG +P TF +M  L E D+SNNR VG FP 
Sbjct: 108 LNHADMAGYLPRELGLLTDLALFHLNSNRFCGEVPLTFKHMKLLFELDLSNNRFVGKFPN 167

Query: 151 VALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLS 210
           V L+     +LDLR+N FEG +P +LF   LD IFLNHN F   IPE +G S    +VL+
Sbjct: 168 VVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENMGNSPVSALVLA 227

Query: 211 SNNFTGCLPRSIGYM-KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP 269
            N+  GC+P SIG M K L EIIL  + L+GCLP +IG+   KN+TVFDI  N+  G +P
Sbjct: 228 DNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGN--LKNVTVFDISFNRLSGPLP 285

Query: 270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF 329
            S  N+ ++ +L++++N  TG + + IC+L +L NFT+S+NFF G A  C++   D+V  
Sbjct: 286 SSIGNMKSLEQLNVANNRFTGVIPSSICQLSNLENFTYSSNFFTGDAPRCVALLGDNVVV 345

Query: 330 EEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDECSWGGSPP 370
               NC+   E Q+   EC    S+ VDCSK  C+   SPP
Sbjct: 346 NGSMNCIDGKEDQRSSKECSSPASRSVDCSKFGCNNFFSPP 386

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0K5|LRX3_ARATH Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1

 Score =  311 bits (798), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 166/377 (44%), Positives = 228/377 (60%), Gaps = 25/377 (6%)

Query: 7   QALSLPKDGKLPNDFEDQYDLKDK-----------------TFESHRMKMAYVGLQAFKK 49
            ALS+  DG + +D E ++  + +                  FE+ R++ AY+ LQA+K+
Sbjct: 19  NALSISSDGGVLSDNEVRHIQRRQLLEFAERSVKITVDPSLNFENPRLRNAYIALQAWKQ 78

Query: 50  AIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQE-RFVAMIDLNKAEIAAHLPPEMGWLL 108
           AI SDP N T NW+G++VC Y GV C   +DN++ R VA IDLN A+IA +LP E+G L 
Sbjct: 79  AILSDPNNFTSNWIGSNVCNYTGVFCSPALDNRKIRTVAGIDLNHADIAGYLPEELGLLS 138

Query: 109 DLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNF 168
           DL  FH N+NR CG +P  F  +  L E D+SNNR  G FPTV L      +LDLRFN F
Sbjct: 139 DLALFHVNSNRFCGTVPHRFNRLKLLFELDLSNNRFAGKFPTVVLQLPSLKFLDLRFNEF 198

Query: 169 EGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKEL 228
           EG +P ELF   LD IF+NHN FR  +PE  G+S    IVL++N F GC+P S+  MK L
Sbjct: 199 EGTVPKELFSKDLDAIFINHNRFRFELPENFGDSPVSVIVLANNRFHGCVPSSLVEMKNL 258

Query: 229 QEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNML 288
            EII M N L+ CLPS+I  G  KN+TVFD+  N+  G +P+S   + ++ +L+++ NML
Sbjct: 259 NEIIFMNNGLNSCLPSDI--GRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNML 316

Query: 289 TGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTEC 348
           +G + A IC+LP L NFT+S NFF G A  C+        F+++ NCL     Q+ P +C
Sbjct: 317 SGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPE----FDDRRNCLPGRPAQRSPGQC 372

Query: 349 YPVVSK-PVDCSKDECS 364
              +S+ PV+C    C 
Sbjct: 373 KAFLSRPPVNCGSFSCG 389

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHF1|LRX4_ARATH Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=1 SV=1

 Score =  310 bits (793), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 167/380 (43%), Positives = 228/380 (60%), Gaps = 26/380 (6%)

Query: 2   FIARRQALSLPKDGKLPNDFEDQYDLKDKT--------FESHRMKMAYVGLQAFKKAIYS 53
           FI RRQ L           + D++  + +         FE+ R++ AY+ LQA+K+AI S
Sbjct: 41  FIQRRQLLY----------YRDEFGDRGENVTVDPSLIFENPRLRSAYIALQAWKQAILS 90

Query: 54  DPYNHTENWVGTDVCQYNGVLCDVFIDNQE-RFVAMIDLNKAEIAAHLPPEMGWLLDLIY 112
           DP N T NW+G++VC Y GV C   +DN++ R VA IDLN A+IA +LP E+G L DL  
Sbjct: 91  DPNNITVNWIGSNVCNYTGVFCSKALDNRKIRTVAGIDLNHADIAGYLPEELGLLTDLAL 150

Query: 113 FHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGEL 172
           FH N+NR CG +P  F  +  L E D+SNNR  G FPTV L      +LDLRFN FEG +
Sbjct: 151 FHVNSNRFCGTVPHKFKQLKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTV 210

Query: 173 PPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEII 232
           P ELF   LD IF+NHN FR  +PE  G+S    IVL++N+F GC+P S+  MK L EII
Sbjct: 211 PKELFSKNLDAIFINHNRFRFELPENFGDSPVSVIVLANNHFHGCIPTSLVEMKNLNEII 270

Query: 233 LMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV 292
            M N L+ CLP++I  G  KN+TVFD+  N+  G +P+S   +  + +L+++ N+L+G +
Sbjct: 271 FMNNGLNSCLPADI--GRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKI 328

Query: 293 SADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVV 352
            A IC+LP L NFT+S NFF G A  C+  S     F+++ NCL     Q+   +C   +
Sbjct: 329 PASICQLPKLENFTYSYNFFTGEAPVCLRLSE----FDDRRNCLPGRPAQRSSRQCSAFL 384

Query: 353 SKP-VDCSKDECSWGGSPPS 371
           S+P VDC    C      PS
Sbjct: 385 SRPSVDCGSFGCGRSVVKPS 404

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|O65375|LRX1_ARATH Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=LRX1 PE=1 SV=1

 Score =  309 bits (792), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 160/369 (43%), Positives = 224/369 (60%), Gaps = 21/369 (5%)

Query: 16  KLPNDFEDQYDL-------KDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVC 68
           ++  D +D+ DL       K   FE+ +++ AY+ LQ++KKAI+SDP+N T NW G+DVC
Sbjct: 23  QIKADHDDESDLGSDIKVDKRLKFENPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVC 82

Query: 69  QYNGVLCDVFIDN------QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCG 122
            YNG+ C            + R VA IDLN A++A +L  E+G L DL  FH N+NR CG
Sbjct: 83  SYNGIYCA-----PSPSYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCG 137

Query: 123 IIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLD 182
            +P TF  M  L E D+SNNR VG FP V L+     +LDLR+N FEG++P +LF   LD
Sbjct: 138 EVPLTFNRMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELD 197

Query: 183 IIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYM-KELQEIILMENQLSGC 241
            IFLNHN FR  IP+ +G S    +VL+ NN  GC+P SIG M K L E+IL  + L+GC
Sbjct: 198 AIFLNHNRFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGC 257

Query: 242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH 301
           LP +IG+   K +TVFDI SN+  G +P S  N+ ++  L +++N  TG +   IC+L +
Sbjct: 258 LPPQIGN--LKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSN 315

Query: 302 LLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKD 361
           L NFT+S+N+F G    C +    D+      NC+  +  Q+   +C  ++++PVDCSK 
Sbjct: 316 LENFTYSSNYFSGRPPICAASLLADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKF 375

Query: 362 ECSWGGSPP 370
            C    SPP
Sbjct: 376 GCYNIFSPP 384

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana GN=LRX5 PE=2 SV=2

 Score =  302 bits (774), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 224/370 (60%), Gaps = 22/370 (5%)

Query: 3   IARRQALSLPKDGKLPNDFEDQYDLKDK----TFESHRMKMAYVGLQAFKKAIYSDPYNH 58
           I +RQ L         ++F D+ +  D      FE+ R++ AY+ LQA+K+AI SDP N 
Sbjct: 46  ITQRQLL------YFRDEFGDRGENVDVDPSLVFENPRLRNAYIALQAWKQAILSDPNNF 99

Query: 59  TENWVGTDVCQYNGVLCDVFIDNQE-RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANT 117
           T NW+G+DVC Y GV C   +DN+  R VA IDLN A+IA +LP E+G L DL  FH N+
Sbjct: 100 TTNWIGSDVCSYTGVYCAPALDNRRIRTVAGIDLNHADIAGYLPQELGLLTDLALFHINS 159

Query: 118 NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF 177
           NR CG +P  F  +  L E D+SNNR  G FPTV L      +LDLRFN FEG +P ELF
Sbjct: 160 NRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELF 219

Query: 178 QTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQ 237
              LD IF+NHN FR  +P+ +G+S    IV+++N+F GC+P S+G M+ L+EII MEN 
Sbjct: 220 SKDLDAIFINHNRFRFELPDNLGDSPVSVIVVANNHFHGCIPTSLGDMRNLEEIIFMENG 279

Query: 238 LSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADIC 297
            + CLPS+I  G  KN+TVFD   N+  GS+P S   + ++ +L+++ N  +G + A IC
Sbjct: 280 FNSCLPSQI--GRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPATIC 337

Query: 298 KLPHLLNFTFSNNFFQGMAMECIS--GSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSK- 354
           +LP L NFTFS NFF G    C+   G      F+++ NCL     Q+ P +C    S  
Sbjct: 338 QLPRLENFTFSYNFFTGEPPVCLGLPG------FDDRRNCLPARPAQRSPGQCAAFSSLP 391

Query: 355 PVDCSKDECS 364
           PVDC    C 
Sbjct: 392 PVDCGSFGCG 401

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSE6|LRX7_ARATH Leucine-rich repeat extensin-like protein 7 OS=Arabidopsis thaliana GN=LRX7 PE=2 SV=1

 Score =  280 bits (716), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/338 (43%), Positives = 204/338 (60%), Gaps = 14/338 (4%)

Query: 32  FESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDN-QERFVAMID 90
           FE+ R++ AYV LQA+K+A+ SDP+N T NW G+ VC YNGV+C   +D+   + V+ +D
Sbjct: 46  FENVRLERAYVALQAWKRAMISDPWNLTTNWFGSRVCDYNGVVCSESLDDPLVKTVSGVD 105

Query: 91  LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPT 150
           LN+ +IA HLP E+G L D+  FH N+NR CG +P  F+ +  L E D+SNNR  G FP 
Sbjct: 106 LNQGDIAGHLPEELGLLTDIALFHVNSNRFCGTLPVGFSQLSLLFELDLSNNRFAGKFPE 165

Query: 151 VALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLS 210
           V +   +  YLDLR+N FEGELP  LF   LD +FLN N FR  IP  +G S    +VL+
Sbjct: 166 VVIGLPKLKYLDLRYNEFEGELPESLFDKDLDALFLNSNRFRSKIPVNMGNSPVSVLVLA 225

Query: 211 SNNFTGCLPRSIGYM-KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP 269
           SN F GC+P S G M K L EIILM+N L  C+P+++G    +N+TV DI  N   G +P
Sbjct: 226 SNRFEGCIPPSFGKMGKTLNEIILMDNGLQSCIPNDMGL--LQNVTVLDISYNWLVGELP 283

Query: 270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF 329
           +S   + N+  L++  NML+G +  ++C L  L +F + +N+F G    C        Y 
Sbjct: 284 KSMGQMENLEVLNVERNMLSGLIPDELCSLEKLRDFRYGSNYFTGEPATC-------RYL 336

Query: 330 EEKG---NCLAEMEYQKLPTECYPVVSKPVDCSKDECS 364
           E      NC  ++  Q+   EC   +SKPVDC   +CS
Sbjct: 337 ENYNYTMNCFKDVRDQRSMMECKMFLSKPVDCDSFKCS 374

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
15235186	699	Pollen-specific leucine-rich repeat exte	0.710	0.639	0.486	1e-118
30685162	956	Pollen-specific leucine-rich repeat exte	0.573	0.377	0.534	1e-117
297834816	927	hypothetical protein ARALYDRAFT_479420 [	0.689	0.468	0.488	1e-117
20259488	712	unknown protein [Arabidopsis thaliana]	0.891	0.787	0.441	1e-116
15226640	727	Pollen-specific leucine-rich repeat exte	0.621	0.537	0.493	1e-112
297836208	740	predicted protein [Arabidopsis lyrata su	0.621	0.528	0.496	1e-111
224103499	711	predicted protein [Populus trichocarpa]	0.575	0.509	0.538	1e-110
255556233	829	protein binding protein, putative [Ricin	0.572	0.434	0.524	1e-110
297798516	668	hypothetical protein ARALYDRAFT_491276 [	0.596	0.561	0.517	1e-110
224123244	499	predicted protein [Populus trichocarpa]	0.570	0.719	0.534	1e-109

>gi|15235186|ref|NP_195123.1| Pollen-specific leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] gi|75318791|sp|O81765.1|PLRX4_ARATH RecName: Full=Pollen-specific leucine-rich repeat extensin-like protein 4; Short=AtPEX4; Short=Pollen-specific LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor gi|3297821|emb|CAA19879.1| extensin-like protein [Arabidopsis thaliana] gi|7270346|emb|CAB80114.1| extensin-like protein [Arabidopsis thaliana] gi|332660902|gb|AEE86302.1| Pollen-specific leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/469 (48%), Positives = 302/469 (64%), Gaps = 22/469 (4%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           AFI +RQ L+LP +G+LP+D E + DLK  TF + R+K AY+ LQA+KKAI+SDP+N T 
Sbjct: 51  AFIVQRQLLTLPDNGELPDDIEYEVDLK-ATFANTRLKRAYIALQAWKKAIFSDPFNTTG 109

Query: 61  NWVGTDVCQYNGVLCDVFIDNQE-RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NW G  VC Y GV+C   +D+ +   VA +DLN A+IA HLP E+G + D+  FH N+NR
Sbjct: 110 NWHGPHVCGYTGVVCAPALDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNR 169

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CGIIP++F  +  + EFDVSNNR VGPFP V L+W    Y DLRFN+FEG++PPELF+ 
Sbjct: 170 FCGIIPKSFEKLKLMHEFDVSNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKK 229

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD IFLN N F   IPE++GES A  +  ++N FTGC+P+SIG MK L EI+ M+N L 
Sbjct: 230 ELDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEIVFMDNDLG 289

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GC PSEI  G+  N+TVFD   N F G +P SF  L ++  +DIS N LTG V  +IC+L
Sbjct: 290 GCFPSEI--GKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHNICQL 347

Query: 300 PHLLNFTFSNNFFQGMAMECI-SGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDC 358
           P+L+N T+S N+F G    C+  GSR ++  ++  NCLA    Q+   EC  V+++PVDC
Sbjct: 348 PNLVNLTYSYNYFSGQGGSCVPGGSRKEIALDDTRNCLASRPEQRSAQECAVVINRPVDC 407

Query: 359 SKDECSWGGSPPSTPS---APTPKPSTSTPAQEPKTPAPAPPTPS---LPSPPVASPTP- 411
           SKD+C+ G S PS PS    PTP P  +TP  +P TP P  P      +P+ PV  P+P 
Sbjct: 408 SKDKCAGGSSTPSKPSPVHKPTPVP--TTPVHKP-TPVPTTPVQKPSPVPTTPVQKPSPV 464

Query: 412 PTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSP 460
           PT      P H+  P++  P    SP P+   P Q+P P  +SP P  P
Sbjct: 465 PT-----TPVHEPSPVLATPVDKPSPVPSR--PVQKPQPPKESPQPDDP 506

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685162|ref|NP_188532.2| Pollen-specific leucine-rich repeat extensin-like protein 1 [Arabidopsis thaliana] gi|75335059|sp|Q9LJ64.1|PLRX1_ARATH RecName: Full=Pollen-specific leucine-rich repeat extensin-like protein 1; Short=AtPEX1; Short=Pollen-specific LRR/EXTENSIN1; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor gi|9280319|dbj|BAB01698.1| extensin protein-like [Arabidopsis thaliana] gi|332642663|gb|AEE76184.1| Pollen-specific leucine-rich repeat extensin-like protein 1 [Arabidopsis thaliana]

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/365 (53%), Positives = 256/365 (70%), Gaps = 4/365 (1%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           +F+ RRQ L+L ++G LP+D E + DL D  F ++R+K AY+ LQA+KKA YSDP+N   
Sbjct: 37  SFLTRRQLLALSENGDLPDDIEYEVDL-DLKFANNRLKRAYIALQAWKKAFYSDPFNTAA 95

Query: 61  NWVGTDVCQYNGVLCDVFIDN-QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NWVG DVC Y GV C   +D+     VA IDLN A+IA +LPPE+G L D+  FH N+NR
Sbjct: 96  NWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHADIAGYLPPELGLLTDVALFHVNSNR 155

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CG+IP++ + +  + EFDVSNNR VGPFPTVAL+W    +LD+R+N+FEG+LPPE+F  
Sbjct: 156 FCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDFEGKLPPEIFDK 215

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD IFLN+N F  +IPETIG+S A  +  + N F+GC+P++IG MK L EI+ + N LS
Sbjct: 216 DLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQMKNLNEIVFIGNNLS 275

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GCLP+EIGS    N+TVFD  SN F GS+P + + L N+ ++D S N  TGFV+ +ICKL
Sbjct: 276 GCLPNEIGS--LNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDNICKL 333

Query: 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
           P L NFTFS NFF G A  C+ GS  +  F++  NCL     QK   EC PVVS+PVDCS
Sbjct: 334 PKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDTSNCLQNRPNQKSAKECLPVVSRPVDCS 393

Query: 360 KDECS 364
           KD+C+
Sbjct: 394 KDKCA 398

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834816|ref|XP_002885290.1| hypothetical protein ARALYDRAFT_479420 [Arabidopsis lyrata subsp. lyrata] gi|297331130|gb|EFH61549.1| hypothetical protein ARALYDRAFT_479420 [Arabidopsis lyrata subsp. lyrata]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/448 (48%), Positives = 287/448 (64%), Gaps = 14/448 (3%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           +F+ RRQ L+L ++G LP+D E + DL D  F ++R+K AY+ LQA+KKA YSDP+N   
Sbjct: 32  SFLTRRQLLALSENGDLPDDMEYEVDL-DLKFANNRLKRAYIALQAWKKAFYSDPFNTAA 90

Query: 61  NWVGTDVCQYNGVLCDVFIDN-QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NWVG DVC Y GV C   +D+     VA IDLN A+IA +LPPE+G L D+  FH N+NR
Sbjct: 91  NWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHADIAGYLPPELGLLTDVALFHINSNR 150

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CG+IP++ + +  + EFDVSNNR VGPFPTVAL+W    +LD+R+N+FEG+LPPE+F  
Sbjct: 151 FCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDFEGKLPPEIFDK 210

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD IFLN+N F  +IPETIG+S A  +  + N F+GC+P++IG MK L EI+ + N LS
Sbjct: 211 DLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQMKNLNEIVFIGNNLS 270

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GCLP+EIGS    N+TVFD  SN F GS+P + + L N+ ++D S N  TGFV+ +ICKL
Sbjct: 271 GCLPNEIGS--LNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDNICKL 328

Query: 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
           P L NFTFS NFF G A  C+ GS  +  F++  NCL     QK   EC PVVS+PVDCS
Sbjct: 329 PKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDMSNCLQNRPNQKSAKECLPVVSRPVDCS 388

Query: 360 KDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRV 419
           KD+C+ G    S  + P+PKP+   P  + +   P    PS P P  +            
Sbjct: 389 KDKCAGGDGGGSGSN-PSPKPTPKAPEPKKEINPPKLEEPSKPKPEESPKPQQPSPKPET 447

Query: 420 PRHKVPPIIVEPPKPSSPTPTTMPPKQE 447
           P H       EP  P  PTP +  PKQE
Sbjct: 448 PSH-------EPSNPKEPTPES--PKQE 466

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20259488|gb|AAM13864.1| unknown protein [Arabidopsis thaliana]

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 263/596 (44%), Positives = 339/596 (56%), Gaps = 35/596 (5%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           +F+ RRQ L+L ++G LP+D E + DL D  F ++R+K AY+ LQA+KKA YSDP+N   
Sbjct: 37  SFLTRRQLLALSENGDLPDDIEYEVDL-DLKFANNRLKRAYIALQAWKKAFYSDPFNTAA 95

Query: 61  NWVGTDVCQYNGVLCDVFIDN-QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NWVG DVC Y GV C   +D+     VA IDLN A+IA +LPPE+G L D+  FH N+NR
Sbjct: 96  NWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHADIAGYLPPELGLLTDVALFHVNSNR 155

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CG+IP++ + +  + EFDVSNNR VGPFPTVAL+W    +LD+R+N+FEG+LPPE+F  
Sbjct: 156 FCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDFEGKLPPEIFDK 215

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD IFLN+N F  +IPETIG+S A  +  + N F+GC+P++IG MK L EI+ + N LS
Sbjct: 216 DLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQMKNLNEIVFIGNNLS 275

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GCLP+EIGS    N+TVFD  SN F GS+P + + L N+ ++D S N  TGFV+ +ICKL
Sbjct: 276 GCLPNEIGS--LNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDNICKL 333

Query: 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
           P L NFTFS NFF G A  C+ GS  +  F++  NCL     QK   EC PVVS+PVDCS
Sbjct: 334 PKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDTSNCLQNRPNQKSAKECLPVVSRPVDCS 393

Query: 360 KDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRV 419
           KD+C+ GG   S PS        +   ++   P P    PS P P  +            
Sbjct: 394 KDKCAGGGGGGSNPSPKPTPTPKAPEPKKEINP-PNLEEPSKPKPEESPKPQQPSPKPET 452

Query: 420 PRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQ-SPPPSSPPPVSYPPPVRSAPPPSPM 478
           P H       EP  P  P P +  PKQE P   Q  P P SP   S   P + AP P   
Sbjct: 453 PSH-------EPSNPKEPKPES--PKQESPKTEQPKPKPESPKQES---PKQEAPKPEQP 500

Query: 479 PSPSSPPPAQSTPQPSPPPVSYP--------------PPVRSPPPPSPMPSPSSPPPVYS 524
                 P  +S+ Q  P P   P              PP +  P P   P P  P     
Sbjct: 501 KPKPESPKQESSKQEPPKPEESPKPEPPKPEESPKPQPPKQETPKPEESPKPQPPKQETP 560

Query: 525 PPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSP 580
            P  SP P    PP + +P P  S  P PP Q  PP +  P +  PP+ SP P+ P
Sbjct: 561 KPEESPKP---QPPKQETPKPEESPKPQPPKQEQPPKTEAPKMGSPPLESPVPNDP 613

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226640|ref|NP_179188.1| Pollen-specific leucine-rich repeat extensin-like protein 3 [Arabidopsis thaliana] gi|75338652|sp|Q9XIL9.1|PLRX3_ARATH RecName: Full=Pollen-specific leucine-rich repeat extensin-like protein 3; Short=AtPEX3; Short=Pollen-specific LRR/EXTENSIN3; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor gi|5306245|gb|AAD41978.1| unknown protein [Arabidopsis thaliana] gi|330251349|gb|AEC06443.1| Pollen-specific leucine-rich repeat extensin-like protein 3 [Arabidopsis thaliana]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/397 (49%), Positives = 270/397 (68%), Gaps = 6/397 (1%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           +FIA+RQ L+LP++G+LP+D E + DLK  TF +HR+K AY+ LQA+KKA+YSDP+N T 
Sbjct: 25  SFIAQRQLLTLPENGELPDDIEYEVDLK-VTFANHRLKRAYIALQAWKKAVYSDPFNTTG 83

Query: 61  NWVGTDVCQYNGVLCDVFIDN-QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NW G  VC Y GV C   +D+     VA +DLN A+IA HLP E+G + D+  FH N+NR
Sbjct: 84  NWHGPHVCGYTGVFCAPALDDPDVAVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNR 143

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CGIIP++F  +  + EFDVSNNR VGPFP+V L+W    ++D+R+N+FEG++PPELF+ 
Sbjct: 144 FCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYNDFEGQVPPELFKK 203

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD IFLN+N F  +IP+++GES A  +  + N F+GC+PRSIG MK L EII  +N L 
Sbjct: 204 DLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKNLNEIIFKDNSLG 263

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GC PSEI  G+  N+ VFD   N F G +P SF  L ++   DIS N LTGF+  +ICKL
Sbjct: 264 GCFPSEI--GKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPENICKL 321

Query: 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
           P L+N T++ N+F G    C+ GS+  +  ++  NCL +   Q+   EC  V+S+PVDCS
Sbjct: 322 PKLVNLTYAYNYFNGQGDSCVPGSQKQIALDDTRNCLPDRPKQRSAKECAVVISRPVDCS 381

Query: 360 KDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAP 396
           KD+C+ GGS  +TPS  +P P  + P  +P+ P  +P
Sbjct: 382 KDKCA-GGSSQATPSK-SPSPVPTRPVHKPQPPKESP 416

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836208|ref|XP_002885986.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331826|gb|EFH62245.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/397 (49%), Positives = 270/397 (68%), Gaps = 6/397 (1%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           +FIA+RQ L+LP++G+LP+D E + DLK  TF +HR+K AY+ LQA+KKA+YSDP+N T 
Sbjct: 25  SFIAQRQLLTLPENGELPDDIEYEVDLK-VTFANHRLKRAYIALQAWKKAVYSDPFNTTG 83

Query: 61  NWVGTDVCQYNGVLCDVFIDN-QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NW G  VC Y GV C   +D+     VA +DLN A+IA HLP E+G + D+  FH N+NR
Sbjct: 84  NWHGPHVCGYTGVFCAPALDDPNVAVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNR 143

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CGIIP++F  +  + EFDVSNNR VGPFP+V L+W    ++DLR+N+FEG++PPELF+ 
Sbjct: 144 FCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDLRYNDFEGQVPPELFKK 203

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD IFLN+N F  +IP+++GES A  +  + N F+GC+PRSIG MK L EII  +N L 
Sbjct: 204 DLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKNLNEIIFKDNSLG 263

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GC PSEI  G+  N+ VFD   N F G +P SF  L ++   DIS N LTGF+  +ICKL
Sbjct: 264 GCFPSEI--GKLSNVNVFDASMNSFTGVLPPSFVGLTSLEEFDISGNKLTGFMPENICKL 321

Query: 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
           P L+N T++ N+F G    C+ GS+ ++  ++  NCL +   Q+   EC  V+S+PVDCS
Sbjct: 322 PKLVNLTYAYNYFNGQGDSCVPGSQKEIALDDTRNCLPDRPKQRSAKECAVVISRPVDCS 381

Query: 360 KDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAP 396
           KD+C+ GGS   TPS  +P P  + P  +P+ P  +P
Sbjct: 382 KDKCA-GGSSYVTPSK-SPSPVPTRPVHKPQPPKESP 416

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103499|ref|XP_002313080.1| predicted protein [Populus trichocarpa] gi|222849488|gb|EEE87035.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/366 (53%), Positives = 252/366 (68%), Gaps = 4/366 (1%)

Query: 3   IARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENW 62
           IARRQ L+L ++G+LP+DFE + D+K+ TF + R++ AY+GLQA+KKA+YSDP+N T NW
Sbjct: 36  IARRQLLTLHENGELPDDFEYEVDVKE-TFANQRLRRAYIGLQAWKKAMYSDPFNTTGNW 94

Query: 63  VGTDVCQYNGVLCD-VFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLC 121
           VG DVC YNGV C     D+    +A +DLN A+IA +LP E+G L D+  FH N+NR C
Sbjct: 95  VGADVCAYNGVFCAPALDDSGLSVMAGVDLNGADIAGYLPAELGLLTDVALFHINSNRFC 154

Query: 122 GIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGL 181
           GIIP++F+ +  + EFDVSNNR VG FP+V LT     YLD+RFN+FEG LPPELF   L
Sbjct: 155 GIIPKSFSKLTLMYEFDVSNNRFVGDFPSVVLTLPSLKYLDIRFNDFEGSLPPELFNKDL 214

Query: 182 DIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC 241
           D +FLN N F  +IPETIG S    +  ++N FTGC+P SIG M  L E+I M N L GC
Sbjct: 215 DALFLNDNRFTSTIPETIGNSPVSVVTFANNKFTGCIPHSIGKMTNLNEVIFMGNDLGGC 274

Query: 242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH 301
            P+EIG     N+TVFD   N F G +P SFA L  +  LD++DN LTGFV  +IC+L  
Sbjct: 275 FPAEIGL--LGNVTVFDASHNGFTGILPSSFAGLKKVELLDLADNKLTGFVPENICRLSS 332

Query: 302 LLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKD 361
           L NFTFS N+F+G A  C+  SR D   ++  NCL++   QK    CYPVVS+PVDCSKD
Sbjct: 333 LTNFTFSYNYFKGEAQACVPPSRKDTVLDDTSNCLSDRPKQKSARTCYPVVSRPVDCSKD 392

Query: 362 ECSWGG 367
           +CS GG
Sbjct: 393 KCSGGG 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556233|ref|XP_002519151.1| protein binding protein, putative [Ricinus communis] gi|223541814|gb|EEF43362.1| protein binding protein, putative [Ricinus communis]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/364 (52%), Positives = 251/364 (68%), Gaps = 4/364 (1%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           +FI  RQ LSL ++ +LPN++E + D+K  TF + R+K AY+ LQA+KKA+YSDP+N T 
Sbjct: 34  SFITGRQLLSLKENEELPNEYEHEVDVK-VTFANQRLKRAYIALQAWKKAMYSDPFNTTS 92

Query: 61  NWVGTDVCQYNGVLCDVFIDN-QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NW G +VC YNGV C   +D+ +   VA IDLN+A+IA  LPPE+G + DL  FH N+NR
Sbjct: 93  NWNGANVCAYNGVFCAPALDDPKLSVVAGIDLNQADIAGFLPPELGLMTDLALFHINSNR 152

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CGI+PE+ + +  + EFD+SNNR VG FP V L W    Y+D+RFNNFEG LPPE+FQ 
Sbjct: 153 FCGIVPESLSKLKFMYEFDISNNRFVGHFPNVVLKWPNVKYIDIRFNNFEGCLPPEIFQM 212

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD + LN+N F  +IP+TIG S    +V + NNFTGC+P SIG M  L EII   N L 
Sbjct: 213 NLDALILNNNRFTCNIPDTIGNSTVSVVVFAYNNFTGCIPHSIGNMPNLNEIIFTGNNLG 272

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GC P+EIG     N TV D+ +N+F G +  SF+ L N+ +L++++N LTGFVS  +C L
Sbjct: 273 GCFPAEIGI--LSNATVLDVSNNQFVGGLASSFSGLKNVEQLNLANNKLTGFVSETLCSL 330

Query: 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
           P L NFTFS+N+F+G A  CIS S  DV  +++ NCL +  YQK    CYPVVS PVDCS
Sbjct: 331 PSLSNFTFSSNYFKGEAKSCISSSNKDVVLDDRNNCLPDRPYQKSARICYPVVSWPVDCS 390

Query: 360 KDEC 363
           KD+C
Sbjct: 391 KDKC 394

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798516|ref|XP_002867142.1| hypothetical protein ARALYDRAFT_491276 [Arabidopsis lyrata subsp. lyrata] gi|297312978|gb|EFH43401.1| hypothetical protein ARALYDRAFT_491276 [Arabidopsis lyrata subsp. lyrata]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/381 (51%), Positives = 259/381 (67%), Gaps = 6/381 (1%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           AFI +RQ L+LP +G+LP+D E + DLK  TF + R+K AY+ LQA+KKAI+SDP+N T 
Sbjct: 34  AFIVQRQLLTLPDNGELPDDIEYEVDLK-ATFANTRLKRAYIALQAWKKAIFSDPFNTTG 92

Query: 61  NWVGTDVCQYNGVLCDVFIDNQE-RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NW G  VC Y GV+C   +D+ +   VA +DLN A+IA HLP E+G + D+  FH N+NR
Sbjct: 93  NWHGPHVCSYTGVVCAPALDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNR 152

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CGIIP++F  +  + EFDVSNNR VGPFP V L+W    Y+DLRFN+FEG++PPELF+ 
Sbjct: 153 FCGIIPKSFEKLKLMHEFDVSNNRFVGPFPKVVLSWPNVKYIDLRFNDFEGQVPPELFKK 212

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD IFLN N F   IPE++GES A  +  ++N FTGC+P+SIG MK L EI+ M+N L 
Sbjct: 213 ELDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEIVFMDNDLG 272

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GC PSEI  G+  N+TVFD   N F G +P SF  L N+   DIS N LTG V  +IC L
Sbjct: 273 GCFPSEI--GKLSNVTVFDASKNSFIGRLPTSFVGLTNVEEFDISGNKLTGLVPDNICNL 330

Query: 300 PHLLNFTFSNNFFQGMAMECI-SGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDC 358
           P+L+NFT+S N+F G    C+  G R ++  ++  NCL     Q+   EC  V+++PVDC
Sbjct: 331 PNLVNFTYSYNYFNGQGGSCVPGGGRKEIALDDTRNCLPARPDQRSSQECAVVINRPVDC 390

Query: 359 SKDECSWGGSPP-STPSAPTP 378
           SKD+C+ GG    STPS P+P
Sbjct: 391 SKDKCAGGGGGGSSTPSKPSP 411

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123244|ref|XP_002330268.1| predicted protein [Populus trichocarpa] gi|222871303|gb|EEF08434.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/363 (53%), Positives = 253/363 (69%), Gaps = 4/363 (1%)

Query: 1   AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
           ++IARRQ L+L ++ +LP++FE + D+K  TF + R++ AY+GLQA+KKAIYSDP+N T 
Sbjct: 34  SYIARRQLLTLNENSELPHEFEYEVDVK-ITFANQRLRRAYIGLQAWKKAIYSDPFNTTG 92

Query: 61  NWVGTDVCQYNGVLCDVFIDN-QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
           NWVG +VC YNGV C   +D+     VA +DLN A+IA HLP E+G + D+  FH N+NR
Sbjct: 93  NWVGANVCAYNGVFCAPALDDPSLSVVAGVDLNGADIAGHLPAELGLMTDVALFHINSNR 152

Query: 120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
            CGIIPE+F+ +  + EFDVSNNR VG FP+V L+W    YLD+RFN+FEG LPPELF  
Sbjct: 153 FCGIIPESFSKLTLMYEFDVSNNRFVGDFPSVVLSWPSLKYLDVRFNDFEGSLPPELFNK 212

Query: 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
            LD +FLN N F  +IPETIG S    +  ++N FTGC+P S+G M  L E+I M N L 
Sbjct: 213 ELDALFLNDNRFTSTIPETIGNSAVSVVTFANNKFTGCIPHSVGKMANLNEVIFMGNDLG 272

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
           GC P+EIG    +N+TVFD   N F G +P SFA L  +  LD++DN LTGFV  +ICKL
Sbjct: 273 GCFPAEIGL--LRNVTVFDASHNGFTGILPPSFAGLKKVELLDLADNKLTGFVPENICKL 330

Query: 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
           P L NFTFS N+F+G A  C+  SR D+  ++  NCL++   QK    CYPVVS+PVDCS
Sbjct: 331 PSLTNFTFSYNYFKGEAQACVPPSRKDIVLDDTSNCLSDRPKQKSARTCYPVVSRPVDCS 390

Query: 360 KDE 362
           KD+
Sbjct: 391 KDK 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
TAIR|locus:2085889	956	AT3G19020 [Arabidopsis thalian	0.578	0.380	0.535	1.9e-106
TAIR|locus:2118949	699	AT4G33970 [Arabidopsis thalian	0.577	0.519	0.516	8.8e-102
TAIR|locus:2044576	727	AT2G15880 [Arabidopsis thalian	0.577	0.499	0.504	1.1e-101
TAIR|locus:2010247	847	AT1G49490 [Arabidopsis thalian	0.564	0.419	0.501	1.3e-96
TAIR|locus:2142105	760	LRX3 "AT4G13340" [Arabidopsis	0.518	0.428	0.476	9.7e-80
TAIR|locus:2094854	494	AT3G24480 [Arabidopsis thalian	0.518	0.659	0.473	3.3e-79
TAIR|locus:2124142	857	AT4G18670 "AT4G18670" [Arabido	0.518	0.380	0.476	2.3e-78
TAIR|locus:2008895	744	LRX1 "AT1G12040" [Arabidopsis	0.534	0.451	0.454	7.9e-78
TAIR|locus:2179449	433	AT5G25550 "AT5G25550" [Arabido	0.523	0.759	0.436	2.5e-72
TAIR|locus:2121348	391	AT4G28380 [Arabidopsis thalian	0.527	0.849	0.431	2.1e-68

TAIR|locus:2085889 AT3G19020 [Arabidopsis thaliana (taxid:3702)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 197/368 (53%), Positives = 258/368 (70%)

Query:     1 AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
             +F+ RRQ L+L ++G LP+D E + DL D  F ++R+K AY+ LQA+KKA YSDP+N   
Sbjct:    37 SFLTRRQLLALSENGDLPDDIEYEVDL-DLKFANNRLKRAYIALQAWKKAFYSDPFNTAA 95

Query:    61 NWVGTDVCQYNGVLCDVFIDNQERFV-AMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
             NWVG DVC Y GV C   +D+    V A IDLN A+IA +LPPE+G L D+  FH N+NR
Sbjct:    96 NWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHADIAGYLPPELGLLTDVALFHVNSNR 155

Query:   120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
              CG+IP++ + +  + EFDVSNNR VGPFPTVAL+W    +LD+R+N+FEG+LPPE+F  
Sbjct:   156 FCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDFEGKLPPEIFDK 215

Query:   180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
              LD IFLN+N F  +IPETIG+S A  +  + N F+GC+P++IG MK L EI+ + N LS
Sbjct:   216 DLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQMKNLNEIVFIGNNLS 275

Query:   240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
             GCLP+EIGS    N+TVFD  SN F GS+P + + L N+ ++D S N  TGFV+ +ICKL
Sbjct:   276 GCLPNEIGS--LNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDNICKL 333

Query:   300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
             P L NFTFS NFF G A  C+ GS  +  F++  NCL     QK   EC PVVS+PVDCS
Sbjct:   334 PKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDTSNCLQNRPNQKSAKECLPVVSRPVDCS 393

Query:   360 KDECSWGG 367
             KD+C+ GG
Sbjct:   394 KDKCAGGG 401

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2118949 AT4G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
 Identities = 190/368 (51%), Positives = 253/368 (68%)

Query:     1 AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
             AFI +RQ L+LP +G+LP+D E + DLK  TF + R+K AY+ LQA+KKAI+SDP+N T 
Sbjct:    51 AFIVQRQLLTLPDNGELPDDIEYEVDLK-ATFANTRLKRAYIALQAWKKAIFSDPFNTTG 109

Query:    61 NWVGTDVCQYNGVLCDVFIDNQE-RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
             NW G  VC Y GV+C   +D+ +   VA +DLN A+IA HLP E+G + D+  FH N+NR
Sbjct:   110 NWHGPHVCGYTGVVCAPALDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNR 169

Query:   120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
              CGIIP++F  +  + EFDVSNNR VGPFP V L+W    Y DLRFN+FEG++PPELF+ 
Sbjct:   170 FCGIIPKSFEKLKLMHEFDVSNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKK 229

Query:   180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
              LD IFLN N F   IPE++GES A  +  ++N FTGC+P+SIG MK L EI+ M+N L 
Sbjct:   230 ELDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEIVFMDNDLG 289

Query:   240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
             GC PSEIG  +  N+TVFD   N F G +P SF  L ++  +DIS N LTG V  +IC+L
Sbjct:   290 GCFPSEIG--KLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHNICQL 347

Query:   300 PHLLNFTFSNNFFQGMAMECI-SGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDC 358
             P+L+N T+S N+F G    C+  GSR ++  ++  NCLA    Q+   EC  V+++PVDC
Sbjct:   348 PNLVNLTYSYNYFSGQGGSCVPGGSRKEIALDDTRNCLASRPEQRSAQECAVVINRPVDC 407

Query:   359 SKDECSWG 366
             SKD+C+ G
Sbjct:   408 SKDKCAGG 415

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2044576 AT2G15880 [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 185/367 (50%), Positives = 254/367 (69%)

Query:     1 AFIARRQALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTE 60
             +FIA+RQ L+LP++G+LP+D E + DLK  TF +HR+K AY+ LQA+KKA+YSDP+N T 
Sbjct:    25 SFIAQRQLLTLPENGELPDDIEYEVDLK-VTFANHRLKRAYIALQAWKKAVYSDPFNTTG 83

Query:    61 NWVGTDVCQYNGVLCDVFIDNQE-RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR 119
             NW G  VC Y GV C   +D+ +   VA +DLN A+IA HLP E+G + D+  FH N+NR
Sbjct:    84 NWHGPHVCGYTGVFCAPALDDPDVAVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNR 143

Query:   120 LCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179
              CGIIP++F  +  + EFDVSNNR VGPFP+V L+W    ++D+R+N+FEG++PPELF+ 
Sbjct:   144 FCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYNDFEGQVPPELFKK 203

Query:   180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
              LD IFLN+N F  +IP+++GES A  +  + N F+GC+PRSIG MK L EII  +N L 
Sbjct:   204 DLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKNLNEIIFKDNSLG 263

Query:   240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
             GC PSEIG  +  N+ VFD   N F G +P SF  L ++   DIS N LTGF+  +ICKL
Sbjct:   264 GCFPSEIG--KLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPENICKL 321

Query:   300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCS 359
             P L+N T++ N+F G    C+ GS+  +  ++  NCL +   Q+   EC  V+S+PVDCS
Sbjct:   322 PKLVNLTYAYNYFNGQGDSCVPGSQKQIALDDTRNCLPDRPKQRSAKECAVVISRPVDCS 381

Query:   360 KDECSWG 366
             KD+C+ G
Sbjct:   382 KDKCAGG 388

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2010247 AT1G49490 [Arabidopsis thaliana (taxid:3702)]

 Score = 937 (334.9 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
 Identities = 182/363 (50%), Positives = 237/363 (65%)

Query:    10 SLPKDGKLPNDFEDQYDLKDKT-----FESHRMKMAYVGLQAFKKAIYSDPYNHTENWVG 64
             S P++  L  D E +    +K      FE+ R+K AY+ LQA+KKAIYSDP+  T NWVG
Sbjct:    27 SFPENADLTKDLEQKCFSINKVDPNLKFENDRLKRAYIALQAWKKAIYSDPFKTTANWVG 86

Query:    65 TDVCQYNGVLCDVFIDNQE-RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGI 123
             +DVC YNGV C   +D+     VA +DLN A+IA HLPPE+G + DL  FH N+NR CGI
Sbjct:    87 SDVCSYNGVYCAPALDDDSLTVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNRFCGI 146

Query:   124 IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDI 183
             IP++ + +  + EFDVSNNR VG FP V+L+W    +LDLR+N FEG LP E+F   LD 
Sbjct:   147 IPKSLSKLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEFEGSLPSEIFDKDLDA 206

Query:   184 IFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243
             IFLN+N F   IP TIG+S A  +  ++N F+GC+P+SIG MK L EI+   N L+GC P
Sbjct:   207 IFLNNNRFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNMKNLNEIVFTGNNLTGCFP 266

Query:   244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLL 303
             +EIG     N+TVFD   N F GS+P + + L ++ +LD+S N LTGFV    CKLP+L 
Sbjct:   267 NEIGL--LNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLD 324

Query:   304 NFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDEC 363
             +F FS NFF G A  C+ G  +   F++  NCL     QK   +C PVVS+PVDCSKD+C
Sbjct:   325 SFKFSYNFFNGEAESCVPGRNNGKQFDDTNNCLQNRPSQKPAKQCLPVVSRPVDCSKDKC 384

Query:   364 SWG 366
             S G
Sbjct:   385 SGG 387

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2142105 LRX3 "AT4G13340" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 159/334 (47%), Positives = 214/334 (64%)

Query:    32 FESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQE-RFVAMID 90
             FE+ R++ AY+ LQA+K+AI SDP N T NW+G++VC Y GV C   +DN++ R VA ID
Sbjct:    61 FENPRLRNAYIALQAWKQAILSDPNNFTSNWIGSNVCNYTGVFCSPALDNRKIRTVAGID 120

Query:    91 LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPT 150
             LN A+IA +LP E+G L DL  FH N+NR CG +P  F  +  L E D+SNNR  G FPT
Sbjct:   121 LNHADIAGYLPEELGLLSDLALFHVNSNRFCGTVPHRFNRLKLLFELDLSNNRFAGKFPT 180

Query:   151 VALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLS 210
             V L      +LDLRFN FEG +P ELF   LD IF+NHN FR  +PE  G+S    IVL+
Sbjct:   181 VVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENFGDSPVSVIVLA 240

Query:   211 SNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ 270
             +N F GC+P S+  MK L EII M N L+ CLPS+IG    KN+TVFD+  N+  G +P+
Sbjct:   241 NNRFHGCVPSSLVEMKNLNEIIFMNNGLNSCLPSDIG--RLKNVTVFDVSFNELVGPLPE 298

Query:   271 SFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFE 330
             S   + ++ +L+++ NML+G + A IC+LP L NFT+S NFF G A  C+        F+
Sbjct:   299 SVGEMVSVEQLNVAHNMLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPE----FD 354

Query:   331 EKGNCLAEMEYQKLPTECYPVVSKP-VDCSKDEC 363
             ++ NCL     Q+ P +C   +S+P V+C    C
Sbjct:   355 DRRNCLPGRPAQRSPGQCKAFLSRPPVNCGSFSC 388

GO:0005515 "protein binding" evidence=IPI

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2094854 AT3G24480 [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 158/334 (47%), Positives = 214/334 (64%)

Query:    32 FESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQE-RFVAMID 90
             FE+ R++ AY+ LQA+K+AI SDP N T NW+G++VC Y GV C   +DN++ R VA ID
Sbjct:    69 FENPRLRSAYIALQAWKQAILSDPNNITVNWIGSNVCNYTGVFCSKALDNRKIRTVAGID 128

Query:    91 LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPT 150
             LN A+IA +LP E+G L DL  FH N+NR CG +P  F  +  L E D+SNNR  G FPT
Sbjct:   129 LNHADIAGYLPEELGLLTDLALFHVNSNRFCGTVPHKFKQLKLLFELDLSNNRFAGKFPT 188

Query:   151 VALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLS 210
             V L      +LDLRFN FEG +P ELF   LD IF+NHN FR  +PE  G+S    IVL+
Sbjct:   189 VVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNRFRFELPENFGDSPVSVIVLA 248

Query:   211 SNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ 270
             +N+F GC+P S+  MK L EII M N L+ CLP++IG    KN+TVFD+  N+  G +P+
Sbjct:   249 NNHFHGCIPTSLVEMKNLNEIIFMNNGLNSCLPADIG--RLKNVTVFDVSFNELVGPLPE 306

Query:   271 SFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFE 330
             S   +  + +L+++ N+L+G + A IC+LP L NFT+S NFF G A  C+  S     F+
Sbjct:   307 SVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSE----FD 362

Query:   331 EKGNCLAEMEYQKLPTECYPVVSKP-VDCSKDEC 363
             ++ NCL     Q+   +C   +S+P VDC    C
Sbjct:   363 DRRNCLPGRPAQRSSRQCSAFLSRPSVDCGSFGC 396

GO:0005576 "extracellular region" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2124142 AT4G18670 "AT4G18670" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 159/334 (47%), Positives = 212/334 (63%)

Query:    32 FESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQE-RFVAMID 90
             FE+ R++ AY+ LQA+K+AI SDP N T NW+G+DVC Y GV C   +DN+  R VA ID
Sbjct:    73 FENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCSYTGVYCAPALDNRRIRTVAGID 132

Query:    91 LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPT 150
             LN A+IA +LP E+G L DL  FH N+NR CG +P  F  +  L E D+SNNR  G FPT
Sbjct:   133 LNHADIAGYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPT 192

Query:   151 VALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLS 210
             V L      +LDLRFN FEG +P ELF   LD IF+NHN FR  +P+ +G+S    IV++
Sbjct:   193 VVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNLGDSPVSVIVVA 252

Query:   211 SNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ 270
             +N+F GC+P S+G M+ L+EII MEN  + CLPS+IG    KN+TVFD   N+  GS+P 
Sbjct:   253 NNHFHGCIPTSLGDMRNLEEIIFMENGFNSCLPSQIG--RLKNVTVFDFSFNELVGSLPA 310

Query:   271 SFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFE 330
             S   + ++ +L+++ N  +G + A IC+LP L NFTFS NFF G    C+ G      F+
Sbjct:   311 SIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCL-GLPG---FD 366

Query:   331 EKGNCLAEMEYQKLPTECYPVVS-KPVDCSKDEC 363
             ++ NCL     Q+ P +C    S  PVDC    C
Sbjct:   367 DRRNCLPARPAQRSPGQCAAFSSLPPVDCGSFGC 400

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2008895 LRX1 "AT1G12040" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 156/343 (45%), Positives = 217/343 (63%)

Query:    26 DLK-DKT--FESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQ 82
             D+K DK   FE+ +++ AY+ LQ++KKAI+SDP+N T NW G+DVC YNG+ C       
Sbjct:    37 DIKVDKRLKFENPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPSYP 96

Query:    83 E-RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSN 141
             + R VA IDLN A++A +L  E+G L DL  FH N+NR CG +P TF  M  L E D+SN
Sbjct:    97 KTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSN 156

Query:   142 NRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE 201
             NR VG FP V L+     +LDLR+N FEG++P +LF   LD IFLNHN FR  IP+ +G 
Sbjct:   157 NRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGN 216

Query:   202 SLARYIVLSSNNFTGCLPRSIGYM-KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR 260
             S    +VL+ NN  GC+P SIG M K L E+IL  + L+GCLP +IG+   K +TVFDI 
Sbjct:   217 SPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGN--LKKVTVFDIT 274

Query:   261 SNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECI 320
             SN+  G +P S  N+ ++  L +++N  TG +   IC+L +L NFT+S+N+F G    C 
Sbjct:   275 SNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICA 334

Query:   321 SGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDEC 363
             +    D+      NC+  +  Q+   +C  ++++PVDCSK  C
Sbjct:   335 ASLLADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKFGC 377

GO:0009927 "histidine phosphotransfer kinase activity" evidence=NAS

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010054 "trichoblast differentiation" evidence=RCA;IMP

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2179449 AT5G25550 "AT5G25550" [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 147/337 (43%), Positives = 205/337 (60%)

Query:    32 FESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQ-ERFVAMID 90
             FE+ R++ AYV LQA+K+A+ SDP+N T NW G+ VC YNGV+C   +D+   + V+ +D
Sbjct:    46 FENVRLERAYVALQAWKRAMISDPWNLTTNWFGSRVCDYNGVVCSESLDDPLVKTVSGVD 105

Query:    91 LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPT 150
             LN+ +IA HLP E+G L D+  FH N+NR CG +P  F+ +  L E D+SNNR  G FP 
Sbjct:   106 LNQGDIAGHLPEELGLLTDIALFHVNSNRFCGTLPVGFSQLSLLFELDLSNNRFAGKFPE 165

Query:   151 VALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLS 210
             V +   +  YLDLR+N FEGELP  LF   LD +FLN N FR  IP  +G S    +VL+
Sbjct:   166 VVIGLPKLKYLDLRYNEFEGELPESLFDKDLDALFLNSNRFRSKIPVNMGNSPVSVLVLA 225

Query:   211 SNNFTGCLPRSIGYM-KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP 269
             SN F GC+P S G M K L EIILM+N L  C+P+++G    +N+TV DI  N   G +P
Sbjct:   226 SNRFEGCIPPSFGKMGKTLNEIILMDNGLQSCIPNDMGL--LQNVTVLDISYNWLVGELP 283

Query:   270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF 329
             +S   + N+  L++  NML+G +  ++C L  L +F + +N+F G    C    R    +
Sbjct:   284 KSMGQMENLEVLNVERNMLSGLIPDELCSLEKLRDFRYGSNYFTGEPATC----RYLENY 339

Query:   330 EEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDECSWG 366
                 NC  ++  Q+   EC   +SKPVDC   +CS G
Sbjct:   340 NYTMNCFKDVRDQRSMMECKMFLSKPVDCDSFKCSPG 376

GO:0008150 "biological_process" evidence=ND

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2121348 AT4G28380 [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 145/336 (43%), Positives = 194/336 (57%)

Query:    31 TFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFV-AMI 89
             T     ++ AY  L+A+KK IYSDP N T +WVG  VC Y G+ C     N    V A I
Sbjct:    36 TNPKQHLQQAYRALKAWKKVIYSDPKNLTADWVGPSVCSYTGIFCAPSPSNPNTLVVAGI 95

Query:    90 DLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFP 149
             DLN  +IA  LP  +G L DL   H N+NR CGI+P +FAN+  L E D+SNNR VGPFP
Sbjct:    96 DLNHGDIAGFLPEAIGLLSDLALIHLNSNRFCGILPRSFANLSLLYELDLSNNRFVGPFP 155

Query:   150 TVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVL 209
              V L      YLDLR+N FEG LPP+LF   LD IF+N+N     IP     + A  +V 
Sbjct:   156 DVVLALPSLKYLDLRYNEFEGPLPPKLFSNPLDAIFVNNNRLTSLIPRDFTGTTASVVVF 215

Query:   210 SSNNFTGCLPRSIG-YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268
             ++N+F+GCLP +I  +   L+E++L+ + LSGCLP E+G   YK L V D+  N   G V
Sbjct:   216 ANNDFSGCLPPTIARFADTLEELLLINSSLSGCLPPEVGY-LYK-LRVLDMSYNSLVGPV 273

Query:   269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVY 328
             P S A L ++ +L++  NM TG V   +C LP LLN T S N+F      C + +   + 
Sbjct:   274 PYSLAGLGHLEQLNLEHNMFTGTVPLGVCVLPSLLNVTVSYNYFSEEEGICRNLTSRGIA 333

Query:   329 FEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDECS 364
              +++ NCL +   Q+    C  V+  P+DC   ECS
Sbjct:   334 IDDRYNCLPDKPLQRPQKVCDAVLEHPIDCYDHECS 369

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	629
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-29
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-27
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-25
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-25
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-22
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-22
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-22
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-20
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-20
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-20
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-20
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	9e-20
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-19
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-19
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-19
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-19
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-19
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-18
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-18
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	8e-18
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-17
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-17
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-17
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-16
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-16
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-15
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-15
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-15
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-15
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-14
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-14
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-14
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-14
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-14
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-14
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-14
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-14
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-14
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-14
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-14
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-13
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-13
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-13
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-13
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-12
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-12
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-12
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	7e-12
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	8e-12
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-12
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	9e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-11
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-11
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-11
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-11
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-11
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-11
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-11
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-11
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	2e-11
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-11
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-11
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-11
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	5e-11
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-11
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-10
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-10
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-10
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-10
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-10
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-10
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-10
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	5e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-09
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-09
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	1e-09
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	1e-09
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-09
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-09
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-09
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	5e-09
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	5e-09
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	5e-09
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	6e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-09
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-08
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-08
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	4e-08
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-08
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-08
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	5e-08
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	6e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-08
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	7e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-08
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	7e-08
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	8e-08
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	8e-08
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	8e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	9e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-07
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	2e-07
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	2e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	3e-07
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	3e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-07
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	4e-07
pfam12737	418	pfam12737, Mating_C, C-terminal domain of homeodom	4e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-07
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	5e-07
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	5e-07
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	5e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	6e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-07
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	7e-07
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	7e-07
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	7e-07
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	8e-07
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-07
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-07
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	9e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-06
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	1e-06
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-06
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	1e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-06
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-06
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	2e-06
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	3e-06
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	3e-06
pfam03326	500	pfam03326, Herpes_TAF50, Herpesvirus transcription	3e-06
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	3e-06
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	3e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-06
pfam12737	418	pfam12737, Mating_C, C-terminal domain of homeodom	4e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-06
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	4e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-06
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	5e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	5e-06
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	5e-06
PHA03379	935	PHA03379, PHA03379, EBNA-3A; Provisional	5e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	5e-06
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	6e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	6e-06
pfam12737	418	pfam12737, Mating_C, C-terminal domain of homeodom	6e-06
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	6e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-06
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	6e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	7e-06
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	7e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	7e-06
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	8e-06
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-06
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	8e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	9e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-06
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-05
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-05
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	1e-05
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	1e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	1e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	1e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	1e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	1e-05
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	1e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	2e-05
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	2e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	2e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	2e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-05
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	2e-05
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	2e-05
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	2e-05
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	2e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	3e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	3e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-05
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	3e-05
pfam13254	414	pfam13254, DUF4045, Domain of unknown function (DU	3e-05
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	3e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	4e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	4e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-05
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	5e-05
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	5e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	5e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	5e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	5e-05
PHA01929	306	PHA01929, PHA01929, putative scaffolding protein	5e-05
PRK11901	327	PRK11901, PRK11901, hypothetical protein; Reviewed	5e-05
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	6e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	6e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	6e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-05
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	7e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	7e-05
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	7e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	7e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	8e-05
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	8e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-05
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	8e-05
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	8e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	9e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	9e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	9e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	1e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	1e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	1e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-04
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	1e-04
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	1e-04
pfam05044	908	pfam05044, Prox1, Homeobox prospero-like protein (	1e-04
pfam05110	1154	pfam05110, AF-4, AF-4 proto-oncoprotein	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	2e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	2e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	2e-04
PHA03379	935	PHA03379, PHA03379, EBNA-3A; Provisional	2e-04
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	2e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	2e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-04
PHA01929	306	PHA01929, PHA01929, putative scaffolding protein	2e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-04
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	2e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	2e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	2e-04
PRK12757	256	PRK12757, PRK12757, cell division protein FtsN; Pr	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-04
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	3e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	3e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	3e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	3e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
pfam03326	500	pfam03326, Herpes_TAF50, Herpesvirus transcription	3e-04
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	3e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	3e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	3e-04
COG3898	531	COG3898, COG3898, Uncharacterized membrane-bound p	3e-04
pfam09786	559	pfam09786, CytochromB561_N, Cytochrome B561, N ter	3e-04
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	3e-04
pfam10667	245	pfam10667, DUF2486, Protein of unknown function (D	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	4e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	4e-04
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	4e-04
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	4e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	4e-04
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	4e-04
pfam04388	667	pfam04388, Hamartin, Hamartin protein	4e-04
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	4e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	5e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	5e-04
pfam12737	418	pfam12737, Mating_C, C-terminal domain of homeodom	5e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	5e-04
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	5e-04
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	5e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	5e-04
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	5e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	5e-04
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	5e-04
pfam07415	489	pfam07415, Herpes_LMP2, Gammaherpesvirus latent me	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	5e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	5e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	5e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	6e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	6e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	6e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	6e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	6e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	6e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	6e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	6e-04
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	6e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	7e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	7e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	7e-04
pfam09786	559	pfam09786, CytochromB561_N, Cytochrome B561, N ter	7e-04
COG3456	430	COG3456, COG3456, Predicted component of the type	7e-04
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	7e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	8e-04
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	8e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	8e-04
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	8e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	8e-04
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	8e-04
pfam06075	564	pfam06075, DUF936, Plant protein of unknown functi	8e-04
PRK14666	694	PRK14666, uvrC, excinuclease ABC subunit C; Provis	8e-04
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	8e-04
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	8e-04
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	8e-04
TIGR02813	2582	TIGR02813, omega_3_PfaA, polyketide-type polyunsat	8e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	9e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	9e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.001
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.001
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.001
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	0.001
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.001
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.001
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.001
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.001
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.001
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.001
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.001
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.001
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.001
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	0.001
pfam05110	1154	pfam05110, AF-4, AF-4 proto-oncoprotein	0.001
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.001
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	0.001
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.001
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.001
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	0.001
PRK06302	155	PRK06302, PRK06302, acetyl-CoA carboxylase biotin	0.001
PRK13733	171	PRK13733, PRK13733, conjugal transfer protein TraV	0.001
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	0.001
pfam06333	406	pfam06333, Med13_C, Mediator complex subunit 13 C-	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.002
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.002
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	0.002
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.002
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.002
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.002
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.002
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.002
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.002
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.002
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.002
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.002
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.002
pfam04388	667	pfam04388, Hamartin, Hamartin protein	0.002
pfam04388	667	pfam04388, Hamartin, Hamartin protein	0.002
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.002
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.002
COG3456	430	COG3456, COG3456, Predicted component of the type	0.002
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.002
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.002
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.002
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.002
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	0.002
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.002
PRK12495	226	PRK12495, PRK12495, hypothetical protein; Provisio	0.002
pfam07358	57	pfam07358, DUF1482, Protein of unknown function (D	0.002
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.003
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.003
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.003
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.003
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.003
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.003
PHA01929	306	PHA01929, PHA01929, putative scaffolding protein	0.003
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.003
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.003
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.003
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.003
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.003
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	0.003
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.003
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.003
COG3456	430	COG3456, COG3456, Predicted component of the type	0.003
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.003
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.003
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	0.003
PRK12495	226	PRK12495, PRK12495, hypothetical protein; Provisio	0.003
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.003
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.003
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.003
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	0.003
cd03784	401	cd03784, GT1_Gtf_like, This family includes the Gt	0.003
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.003
pfam07271	279	pfam07271, Cytadhesin_P30, Cytadhesin P30/P32	0.003
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.004
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	0.004
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.004
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.004
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.004
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.004
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.004
pfam10428	419	pfam10428, SOG2, RAM signalling pathway protein	0.004
COG3898	531	COG3898, COG3898, Uncharacterized membrane-bound p	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.004
PHA03325	418	PHA03325, PHA03325, nuclear-egress-membrane-like p	0.004
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.004
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.004
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.004
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	0.004
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	0.004
pfam12238	201	pfam12238, MSA-2c, Merozoite surface antigen 2c	0.004
PHA03375	844	PHA03375, PHA03375, hypothetical protein; Provisio	0.004
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.004
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	0.004
PRK13042	291	PRK13042, PRK13042, superantigen-like protein; Rev	0.004

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  128 bits (323), Expect = 1e-30
 Identities = 77/266 (28%), Positives = 97/266 (36%), Gaps = 10/266 (3%)

Query: 369  PPSTPSAPTPK--PSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
              S P  P  +    T         P P PPTP  P+P       P        R   P 
Sbjct: 2676 ASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE-PAPHALVSATPLPPGPAAARQASPA 2734

Query: 427  IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPP 486
            +   P  P+ P     P     P     PP ++ PP   PP   +A PP  +  P+    
Sbjct: 2735 LPAAPAPPAVPAGPATPGGPARPA---RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791

Query: 487  AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
            ++S      P     PP     P + +P  +SP     PPP S  P + PPP    PP  
Sbjct: 2792 SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP-LPPPTSAQPTAPPPPPGPPPPSL 2850

Query: 547  P---SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPP 603
            P   S++P   V+  PP   P      P R P      P+ S S       P     PP 
Sbjct: 2851 PLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQ 2910

Query: 604  VGSPPPPIQSPPPPVQSPPPPSPPPP 629
              +PPPP   P PP    P P PPPP
Sbjct: 2911 PQAPPPPQPQPQPPPPPQPQPPPPPP 2936

Length = 3151

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  123 bits (310), Expect = 3e-29
 Identities = 88/282 (31%), Positives = 136/282 (48%), Gaps = 16/282 (5%)

Query: 44  LQAFKKAIYSDPYNHTENWVGT-DVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPP 102
           L +FK +I +DP  +  NW  + DVC + G+ C+    N  R V  IDL+   I+  +  
Sbjct: 34  LLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCN----NSSR-VVSIDLSGKNISGKISS 87

Query: 103 EMGWLLDLIYFHANTNRLCGIIPET-FANMHRLEEFDVSNNRLVGPFPTVALTWKRNLY- 160
            +  L  +   + + N+L G IP+  F     L   ++SNN   G  P  ++    NL  
Sbjct: 88  AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP---NLET 144

Query: 161 LDLRFNNFEGELPPEL-FQTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCL 218
           LDL  N   GE+P ++   + L ++ L  N   G IP ++   +   ++ L+SN   G +
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 219 PRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNI 278
           PR +G MK L+ I L  N LSG +P EI  G   +L   D+  N   G +P S  NL N+
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEI--GGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262

Query: 279 MRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECI 320
             L +  N L+G +   I  L  L++   S+N   G   E +
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304

Length = 968

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  119 bits (299), Expect = 1e-27
 Identities = 93/296 (31%), Positives = 113/296 (38%), Gaps = 37/296 (12%)

Query: 369  PPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVP----RHKV 424
            PP  P  P P P     A  P  P PA    + P+ P A   P        P    R   
Sbjct: 2701 PPPPPPTPEPAPHALVSAT-PLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR 2759

Query: 425  PPIIVEPPKPSSPT-PTTMPPKQEPPPLVQS----------PPPSSPPPVSYPPPVRSAP 473
            PP    PP P+ P  P   PP++   P V S          P   + PP +   P  +A 
Sbjct: 2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA-AAL 2818

Query: 474  PPSPMPSPSSPPPAQSTPQPSPPPVSYPPPV--------------RSPPPPSPMPSPSSP 519
            PP+  P+   PPP  + P   PPP   PPP               R PP  SP   P++P
Sbjct: 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAP 2878

Query: 520  --PPV--YSPPPPSPPPVSYP-PPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP-PPVR 573
              PPV   + P  S    S+  PP +   PP P   PPP  Q  PPP P P   P PP R
Sbjct: 2879 ARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938

Query: 574  SPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
              PP +PT  P+ +  P    P P       G    P    P P  S   P+   P
Sbjct: 2939 PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  112 bits (282), Expect = 2e-25
 Identities = 83/287 (28%), Positives = 107/287 (37%), Gaps = 12/287 (4%)

Query: 345  PTECYPVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSP 404
            P    P  S+P   S+          + P AP            P  P+P PP    P P
Sbjct: 2570 PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPV-DDRGDPRGPAP--PSPLPPDTHAPDP 2626

Query: 405  PVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVS 464
            P  SP+P   E +  P   VPP          P P  +   +    L ++   SSPP   
Sbjct: 2627 PPPSPSPAANEPDPHPPPTVPP---PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRP 2683

Query: 465  YPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYS 524
                 R  P    + S + PPP   TP+P+P  +        PP P+     S   P   
Sbjct: 2684 RRRAAR--PTVGSLTSLADPPPPPPTPEPAPHALV--SATPLPPGPAAARQASPALPAAP 2739

Query: 525  PPPPSPP-PVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPT-P 582
             PP  P  P +   P R + PPT +  P P   + P   PP  L  P V S   S  + P
Sbjct: 2740 APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLP 2799

Query: 583  SPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
            SP     PP     P +  PP  SP  P+  P     + PPP P PP
Sbjct: 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPP 2846

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  111 bits (279), Expect = 3e-25
 Identities = 77/305 (25%), Positives = 98/305 (32%), Gaps = 46/305 (15%)

Query: 369  PPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWN-----RVPRHK 423
             P  P+ P+P P   T A +P  P+P+P        P  +  PP    +     RV R +
Sbjct: 2607 DPRGPAPPSPLPP-DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPR 2665

Query: 424  VPPIIVEPPKPSSPT----PTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPP--PSP 477
                +    + SSP          P       +  PPP  P P   P  + SA P  P P
Sbjct: 2666 RARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGP 2725

Query: 478  MPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP--PPPSPPPVSY 535
              +  + P   + P P   P     P     P  P P+ + PP    P  P   PP    
Sbjct: 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARP-PTTAGPPAPAPPAAPAAGPPRRLT 2784

Query: 536  PPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP-----PPSSPTPSPSPSPPP 590
             P V S      SL  P     PP     P    PP  SP     PP+S  P+  P PP 
Sbjct: 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG 2844

Query: 591  PIQS-----------------PPPTSPPPPVGSPP---------PPIQSPPPPVQSPPPP 624
            P                    PP  SP     +P          P +         PP  
Sbjct: 2845 PPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQ 2904

Query: 625  SPPPP 629
               PP
Sbjct: 2905 PERPP 2909

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  107 bits (269), Expect = 6e-24
 Identities = 71/269 (26%), Positives = 86/269 (31%), Gaps = 10/269 (3%)

Query: 366  GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
               PP  P+AP   P  S P   P  PAP P  P++ S       PP     R P     
Sbjct: 2550 DPPPPLPPAAPPAAPDRSVP---PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVD--D 2604

Query: 426  PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
                  P P SP P        PPP          P      P    P   P P   S P
Sbjct: 2605 RGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRP 2664

Query: 486  ---PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSS 542
                       +  P   P    + P    + S + PPP    P P+P  +    P+   
Sbjct: 2665 RRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG 2724

Query: 543  PPPTPSLSPPPPVQSPPPPSPP-PVLYPPPVRSPPPSSPTPSPSPSPPP-PIQSPPPTSP 600
            P      SP  P    PP  P  P     P R   P +    P+P+PP  P   PP    
Sbjct: 2725 PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784

Query: 601  PPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
             P V S     +S P P     PP+    
Sbjct: 2785 RPAVASLSESRESLPSPWDPADPPAAVLA 2813

Length = 3151

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (259), Expect = 6e-23
 Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 9/231 (3%)

Query: 88  MIDLNKAEIAAHLPPEM---GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL 144
           ++DL+   +   +P  +   G L  LI F   +N L G IP++      L    + +N  
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILF---SNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 145 VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESL 203
            G  P+         +LD+  NN +G +    +    L ++ L  N F G +P++ G   
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR 476

Query: 204 ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK 263
              + LS N F+G +PR +G + EL ++ L EN+LSG +P E+ S   K L   D+  N+
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS--CKKLVSLDLSHNQ 534

Query: 264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
             G +P SF+ +  + +LD+S N L+G +  ++  +  L+    S+N   G
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (257), Expect = 1e-22
 Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 20/243 (8%)

Query: 82  QERFVAMIDLNKAEIAAHLPPEMGWL-----LDLIYFHANTNRLCGIIPETFANMHRLEE 136
           Q + +  I L    ++  +P E+G L     LDL+Y     N L G IP +  N+  L+ 
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY-----NNLTGPIPSSLGNLKNLQY 264

Query: 137 FDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSI 195
             +  N+L GP P    + ++ + LDL  N+  GE+P  + Q   L+I+ L  N F G I
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 196 PETIGESLARYIVLS--SNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEI-GSGEYK 252
           P  +  SL R  VL   SN F+G +P+++G    L  + L  N L+G +P  +  SG   
Sbjct: 325 PVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383

Query: 253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF-TFSNNF 311
            L +F   SN   G +P+S     ++ R+ + DN  +G + ++  KLP L+ F   SNN 
Sbjct: 384 KLILF---SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP-LVYFLDISNNN 439

Query: 312 FQG 314
            QG
Sbjct: 440 LQG 442

Length = 968

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score =  101 bits (254), Expect = 2e-22
 Identities = 43/198 (21%), Positives = 72/198 (36%), Gaps = 6/198 (3%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
            P  ++  P   P      P   +P P++PP      P  +A   +   +P+   PA   
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 491 PQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLS 550
              +    +  P     P P+P  +P++     +  P      +   P R++P   P+ +
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492

Query: 551 P--PPPVQSPPPPSPPPVLYPP-PVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP 607
              PPP +  PP    P    P    +   +   P P+ + P        T  P P  +P
Sbjct: 493 DDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD---AFETLAPAPAAAP 549

Query: 608 PPPIQSPPPPVQSPPPPS 625
            P   +   PV +P PP 
Sbjct: 550 APRAAAATEPVVAPRPPR 567

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  101 bits (254), Expect = 4e-22
 Identities = 73/263 (27%), Positives = 92/263 (34%), Gaps = 13/263 (4%)

Query: 368  SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
            +PP+ P+A  P+  T            + P+P  P+ P A+   P             P 
Sbjct: 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAS----PA 2825

Query: 428  IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPP--PVSYPPPVRSAPPPSPMPSPSSPP 485
               PP P+S  PT  PP   PPP       S  P   V   PP RS P   P      P 
Sbjct: 2826 GPLPP-PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS-PAAKPAAPARPPV 2883

Query: 486  PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPP 545
               + P  S    S+  P   P  P    +P  P P   PPPP  P    PPP R  PP 
Sbjct: 2884 RRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPL 2943

Query: 546  TPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVG 605
             P+  P    +       P +    P R   P    P P+PS        P +S PP  G
Sbjct: 2944 APTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSRE-----APASSTPPLTG 2998

Query: 606  SPPPPIQSPPPPVQSPPPPSPPP 628
                 + S    +       PPP
Sbjct: 2999 HSLSRVSSWASSLALHEETDPPP 3021

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  101 bits (254), Expect = 4e-22
 Identities = 82/283 (28%), Positives = 95/283 (33%), Gaps = 34/283 (12%)

Query: 373  PSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSP------PVASPTPP-TWEWNRVPRHKVP 425
            P A    P    P         APP PS  +P      PV  P  P    W R       
Sbjct: 2489 PFAAGAAPD---PGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELAS 2545

Query: 426  PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYP----PPVRSAPPPSPMPSP 481
                +PP P  P      P +  PP   +P PS P   S       P +SA P +P+   
Sbjct: 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPV-DD 2604

Query: 482  SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPP-PVYSPPPPSPPPVSYPPPVR 540
               P   + P P PP    P     PPPPSP P+ + P        PP   P   P P R
Sbjct: 2605 RGDPRGPAPPSPLPPDTHAPD----PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGR 2660

Query: 541  SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS------PPPSSPTPSPSPSP------ 588
             S P            S PP  P      P V S      PPP  PTP P+P        
Sbjct: 2661 VSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATP 2720

Query: 589  -PPPIQSPPPTSPPPPVG-SPPPPIQSPPPPVQSPPPPSPPPP 629
             PP   +    SP  P   +PP     P  P     P  PP  
Sbjct: 2721 LPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT 2763

Length = 3151

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 99.5 bits (248), Expect = 1e-21
 Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 31/253 (12%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF 148
           +DL+   ++  +P  +  L +L   H  +N   G IP    ++ RL+   + +N+  G  
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 149 PTVALTWKRNL-YLDLRFNNFEGELPPELFQTG-LDIIFLNHNWFRGSIPETIG--ESLA 204
           P   L    NL  LDL  NN  GE+P  L  +G L  + L  N   G IP+++G   SL 
Sbjct: 349 PK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407

Query: 205 R-----------------------YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC 241
           R                       ++ +S+NN  G +      M  LQ + L  N+  G 
Sbjct: 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Query: 242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH 301
           LP   GS   +NL   D+  N+F G+VP+   +L+ +M+L +S+N L+G +  ++     
Sbjct: 468 LPDSFGSKRLENL---DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK 524

Query: 302 LLNFTFSNNFFQG 314
           L++   S+N   G
Sbjct: 525 LVSLDLSHNQLSG 537

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.7 bits (238), Expect = 2e-20
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 4/228 (1%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF 148
           +DL    +   +P  +G L +L Y     N+L G IP +  ++ +L   D+S+N L G  
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 149 PTVALTWKRNLYLDLRFNNFEGELPPELFQTG-LDIIFLNHNWFRGSIPETIGESLARYI 207
           P + +  +    L L  NNF G++P  L     L ++ L  N F G IP+ +G+     +
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 208 V-LSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
           + LS+NN TG +P  +     L ++IL  N L G +P  +G+   ++L    ++ N F G
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA--CRSLRRVRLQDNSFSG 418

Query: 267 SVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
            +P  F  L  +  LDIS+N L G +++    +P L   + + N F G
Sbjct: 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Length = 968

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 94.7 bits (236), Expect = 4e-20
 Identities = 44/202 (21%), Positives = 68/202 (33%), Gaps = 7/202 (3%)

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
           +V P   ++       P    PP   + P +   P +   P  +    +P  + ++P P 
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
            + P+  P  V+ P          P  +  + P    P P    P +       +     
Sbjct: 647 VAAPEHHPKHVAVPDA-SDGGDGWPAKAGGAAPAAPPPAPAPAAPAA------PAGAAPA 699

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP 607
             +P P    P   +  P   PP       +    +  P P PP    PP     P   P
Sbjct: 700 QPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPP 759

Query: 608 PPPIQSPPPPVQSPPPPSPPPP 629
           PPP  +P     + PPPSPP  
Sbjct: 760 PPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 94.5 bits (235), Expect = 6e-20
 Identities = 62/287 (21%), Positives = 82/287 (28%), Gaps = 25/287 (8%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
                P++P  + S + P      P P  P P+ P P  A            P       
Sbjct: 92  LSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAAS 151

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVR-SAPPPSPMPSPSSPPP 486
                   +   +     ++    + SP  ++  P S P     S PP +  P P     
Sbjct: 152 PPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSS 211

Query: 487 AQSTPQPSPPPVSYPPPVRSPPP---------------------PSPMPSPSSPPPVYSP 525
             S    SP P                                 P P P+P + P     
Sbjct: 212 PISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWE 271

Query: 526 PPPSPPPVSYPPPVRSS---PPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTP 582
                 P S P P  SS      +PS SP  P   P P SP         R    SS + 
Sbjct: 272 ASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSS 331

Query: 583 SPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           S   S    +   P  S  P    PPPP     P  +  P  +P  P
Sbjct: 332 SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP 378

Length = 1352

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 94.1 bits (234), Expect = 7e-20
 Identities = 61/259 (23%), Positives = 76/259 (29%), Gaps = 29/259 (11%)

Query: 373 PSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPP 432
               +     ++     ++   A   P     P   P P  W     P  + P       
Sbjct: 87  VGPDSDLSQKTSTFSPCQSGYEASTDPE--YIPDLQPDPSLWGTAPKPEPQPPQA----- 139

Query: 433 KPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQ 492
                      P+ +P P   +    S   V      R   P  P       PP Q  PQ
Sbjct: 140 -----------PESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLP------QPPQQVLPQ 182

Query: 493 PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPP 552
             PP  +  P    P  P   P P    P    P    P  S  P     PP  P    P
Sbjct: 183 GMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ--QP 240

Query: 553 PPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP--PVGSPPPP 610
           PP+Q P  P     + PPP + PP     P    + PPP   P P    P       PPP
Sbjct: 241 PPLQQPQFPGLSQQMPPPPPQ-PPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPP 299

Query: 611 IQSPPPPVQSPPPPSPPPP 629
            Q    P+   P      P
Sbjct: 300 QQPQLLPLVQQPQGQQRGP 318

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 93.4 bits (232), Expect = 9e-20
 Identities = 38/185 (20%), Positives = 61/185 (32%), Gaps = 8/185 (4%)

Query: 453 QSPPPSSPPPVSYPPPVRSAPPP-SPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPS 511
             P  ++  PV+ P P  +AP   +P P+     PA +    +        P R  P P 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 512 PMP----SPSSPPPVYSPPPPSPPPV---SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
            +     + +  P     P P+P      +  P      P   + +  P   +P     P
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491

Query: 565 PVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPP 624
               PPP    PP   +P+P+     P      + P P    P    ++  P   + P P
Sbjct: 492 ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAP 551

Query: 625 SPPPP 629
                
Sbjct: 552 RAAAA 556

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 93.1 bits (231), Expect = 2e-19
 Identities = 72/258 (27%), Positives = 88/258 (34%), Gaps = 32/258 (12%)

Query: 386  AQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPK 445
            A+ P     AP       P   +P  P+           P I+     P  P    + P+
Sbjct: 2486 ARFPFAAGAAPDPGGGGPPDPDAPPAPS--------RLAPAIL-----PDEPVGEPVHPR 2532

Query: 446  ---------QEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPP 496
                     +        PPP  PP      P RS PPP P P PS P       +P  P
Sbjct: 2533 MLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAP 2592

Query: 497  PVSYPPPV-RSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPV 555
            P S  P            P+P SP P  +  P  PPP   P P  + P P P  + PPP 
Sbjct: 2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS--PSPAANEPDPHPPPTVPPPE 2650

Query: 556  QSPPPPSPPPVLYP----PPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPI 611
            +    P+P  V  P       R+   SSP   P      P      +   PP   PPPP 
Sbjct: 2651 RPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPP---PPPPT 2707

Query: 612  QSPPPPVQSPPPPSPPPP 629
              P P       P PP P
Sbjct: 2708 PEPAPHALVSATPLPPGP 2725

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 91.9 bits (228), Expect = 2e-19
 Identities = 46/235 (19%), Positives = 74/235 (31%), Gaps = 30/235 (12%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
           G  P +  +AP  +P+ +  A     PAPA P  +  + P A+                 
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAAR------------- 417

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
                     +  P    P  E     +      P           AP P+P  +P++  
Sbjct: 418 --------AVAAAPARRSPAPEALAAARQASARGPGG-------APAPAPAPAAAPAAAA 462

Query: 486 PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPP 545
              +         +   P R+ P  +P P+   PPP    PP    P    P   ++P  
Sbjct: 463 RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPD--AAPAG 520

Query: 546 TPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
             + S P P  + P  +   +   P     P ++    P  +P PP  S      
Sbjct: 521 WVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 91.9 bits (228), Expect = 4e-19
 Identities = 71/282 (25%), Positives = 96/282 (34%), Gaps = 37/282 (13%)

Query: 369  PPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSL-----PSPPVA--SPTPPTWEWNRVPR 421
            P ++P+ P P P+++ P   P  P P PP+  L     P   V    P+         P 
Sbjct: 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPA 2879

Query: 422  HKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSP 481
                  +  P    S     +PP Q   P     PP   P    PPP +  PPP P P P
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

Query: 482  SSPPPAQSTPQPSPPPVSYPP--------PVRSPPPPSPMPSPSSPPPVYSPPPPSPPPV 533
              P    + P  +  P    P        P R   P   +P P+  P   +P   +PP  
Sbjct: 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPA--PSREAPASSTPPLT 2997

Query: 534  SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPP----------PVRSPPPSSPTPS 583
             +     SS   + +L        PPP S    L+PP             S    S   +
Sbjct: 2998 GHSLSRVSSWASSLALHEET---DPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEA 3054

Query: 584  PSPSPPPPIQSPPPTSPPPPVGSPPPPIQSP-----PPPVQS 620
              P PP P    P    P P        +SP     PPP+ +
Sbjct: 3055 LDPLPPEP--HDPFAHEPDPATPEAGARESPSSQFGPPPLSA 3094

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 91.5 bits (227), Expect = 4e-19
 Identities = 48/221 (21%), Positives = 71/221 (32%), Gaps = 22/221 (9%)

Query: 395 APPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQS 454
            P T +  + PVA P P             P      P      P   P        V +
Sbjct: 373 GPATAA--AAPVAQPAPAA---------AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAA 421

Query: 455 PPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMP 514
            P    P        R A    P  +P+  P   + P  +  P +   P       +  P
Sbjct: 422 APARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAA-AGPRPVAAAAAAAP 480

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS 574
           + ++P    +P    PPP    PP  +SP P    + P    +   P        P    
Sbjct: 481 ARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD-------PATAD 533

Query: 575 PPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPP 615
           P  +  T +P+P+  P   +P   +   PV +P PP  S  
Sbjct: 534 PDDAFETLAPAPAAAP---APRAAAATEPVVAPRPPRASAS 571

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 90.8 bits (226), Expect = 7e-19
 Identities = 53/239 (22%), Positives = 71/239 (29%), Gaps = 27/239 (11%)

Query: 362 ECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPR 421
           E   G +P +      P P++S P +E   PA AP  P+ P+ P  +             
Sbjct: 585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPA-APAAPAAPAAPAPAGAAA--------- 634

Query: 422 HKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSP 481
                    P + S+     +   +  P  V  P  S       P     A P +P P+P
Sbjct: 635 --------APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW-PAKAGGAAPAAPPPAP 685

Query: 482 SSPPPAQSTPQPSPPPVSYPPPVRSPPP-PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
           +   PA         P   P           P   P       S P P+       PP  
Sbjct: 686 APAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP-- 743

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTS 599
              P  P      P Q PPPP+P P        + PP SP             S     
Sbjct: 744 --EPDDPPDPAGAPAQPPPPPAPAP---AAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 88.9 bits (221), Expect = 3e-18
 Identities = 45/220 (20%), Positives = 59/220 (26%), Gaps = 17/220 (7%)

Query: 402 PSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPP 461
           P+P  A    P    +  P          P + + P     P     P    +    +  
Sbjct: 590 PAPGAAGGEGPPAPASSGP----------PEEAARPAAPAAPAAPAAPAPAGAAAAPAEA 639

Query: 462 PVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPS---- 517
             +  P V     P   P   + P A       P       P   PP P+P    +    
Sbjct: 640 SAAPAPGV---AAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696

Query: 518 SPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPP 577
           +P      P  +PP      P    P      S P P    P P PP    PP     P 
Sbjct: 697 APAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPA 756

Query: 578 SSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPP 617
             P P        P  +PPP+ P            S    
Sbjct: 757 QPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDE 796

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 88.2 bits (219), Expect = 3e-18
 Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 468 PVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPP 527
           P  +A   +P    +   P  + P  +P   +   P  +  P +   +P++PP    P P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPS 587
            + P  + P                 P      P+PP    P  V  P   +P P+ + +
Sbjct: 426 VAAPAAAAPAAAP----------AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475

Query: 588 PPPPIQSPPPTSPPP 602
            P P  +P      P
Sbjct: 476 APAPAAAPAAARLTP 490

Length = 618

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 87.5 bits (217), Expect = 8e-18
 Identities = 56/299 (18%), Positives = 79/299 (26%), Gaps = 32/299 (10%)

Query: 363 CSWGGSPPS---------------------TPSAPTPKPSTSTPAQEPKTPAPAPPTPSL 401
               G PP                       P++P  + S + P      P P  P P+ 
Sbjct: 66  EPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAS 125

Query: 402 PSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPP 461
           P P  A            P               +   +     ++    + SP  ++  
Sbjct: 126 PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARA 185

Query: 462 PVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPP 521
           P S P     + PP+          +  +   S P  +           S   S SS   
Sbjct: 186 PSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESS 245

Query: 522 VYSPPPPSPPPVSYPPPVRSSPPP---TPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPS 578
                P +  P+  P P+         +    P          S P    P P  S P S
Sbjct: 246 GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305

Query: 579 SPTPSP-------SPSPPPPIQSPPPTSPPP-PVGSPPPPIQSPPPPVQSPPPPSPPPP 629
            P PS        S S      S   +S         P P  S  P    PPPP+ P  
Sbjct: 306 GPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSS 364

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 87.1 bits (216), Expect = 1e-17
 Identities = 63/272 (23%), Positives = 82/272 (30%), Gaps = 11/272 (4%)

Query: 365 WGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKV 424
              SPP+  ++P    S +  +++   P  +P   +       +  PP+           
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207

Query: 425 PPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSP 484
                     SSP P   P +        S   SS    S          P P P+P + 
Sbjct: 208 RRSSPISASASSPAP--APGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITL 265

Query: 485 PPAQSTPQPSPPPVSYPPPVRSP-PPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSP 543
           P           P S P P  S   P    PSPS   P   P P SP   S     R S 
Sbjct: 266 PTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS 325

Query: 544 PPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPP 603
             + S S      +   P P P   P P R PPP+ P+       P    S P  S   P
Sbjct: 326 SSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRP 385

Query: 604 --------VGSPPPPIQSPPPPVQSPPPPSPP 627
                   V        +        P PSP 
Sbjct: 386 TRRRARAAVAGRARRRDATGRFPAGRPRPSPL 417

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 85.4 bits (212), Expect = 3e-17
 Identities = 40/210 (19%), Positives = 55/210 (26%), Gaps = 11/210 (5%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
             S      A  P    +  A     PA A   P+  S   A               +  
Sbjct: 603 PASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA---------PEHH 653

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
           P  V  P  S              P    P P+   P +      + P P+P  +P +  
Sbjct: 654 PKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713

Query: 486 PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPP 545
                 QP         P  +   P P+P     PP  +  P  PPP   P P  +    
Sbjct: 714 ADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773

Query: 546 TPSLSPPPPVQSPPPPSPPPVLYPPPVRSP 575
            P   P    +     +P         R  
Sbjct: 774 PPPSPPSEEEEMAEDDAPSMD--DEDRRDA 801

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 84.5 bits (209), Expect = 9e-17
 Identities = 64/274 (23%), Positives = 81/274 (29%), Gaps = 13/274 (4%)

Query: 367 GSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
           GS     S      + +  A         PPT   P P   +P       +         
Sbjct: 38  GSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANE--SRSTPTWSLSTL 95

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQ--SPPPSSPPPVSYP--------PPVRSAPPPS 476
               P +  SPTP        PPP     SPPPS  P +S          PP  ++PP +
Sbjct: 96  APASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAA 155

Query: 477 PMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYP 536
                +    A S+ Q + P  S     R+P  P   P PS+PP   SP PP        
Sbjct: 156 GASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISA 215

Query: 537 PPVRSSPPPTPSL-SPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
                +P P  S         S    S        P    P   P P   P+        
Sbjct: 216 SASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGW 275

Query: 596 PPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
              S  P   S     +   P      P S P P
Sbjct: 276 NGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAP 309

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 82.5 bits (204), Expect = 2e-16
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 433 KPSSPTPTTMPPKQEPP-PLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTP 491
           KP++      P +++ P     + P ++P   +   P  +A P +   +P++PP A    
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAA---- 420

Query: 492 QPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSP 551
              P PV+ P        P+  P+  +  P   P   +P  V+   PVR +P P  + + 
Sbjct: 421 -APPAPVAAPAAAAPAAAPAAAPAAVALAPA-PPAQAAPETVA--IPVRVAPEPAVASAA 476

Query: 552 PPPVQSPPPPSPPP 565
           P P  +P      P
Sbjct: 477 PAPAAAPAAARLTP 490

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 81.3 bits (201), Expect = 5e-16
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 4/128 (3%)

Query: 503 PVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPS 562
           P  +    +P    +   P  + P  +P   +   P  ++ P   +     P   P    
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAA---SAPAAPPAAAP 422

Query: 563 PPPVLYPPPVRSPPPSSPTPSPSPSPP-PPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSP 621
           P PV  P         +  P+     P PP Q+ P T   P   +P P + S  P   + 
Sbjct: 423 PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482

Query: 622 PPPSPPPP 629
           P  +   P
Sbjct: 483 PAAARLTP 490

Length = 618

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 79.1 bits (196), Expect = 2e-15
 Identities = 29/148 (19%), Positives = 40/148 (27%), Gaps = 9/148 (6%)

Query: 486 PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPP 545
           PA   P+P  PP S  P   +    +P  + + P     PPPP+  P   P         
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 546 -----TPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
                   L             P       PV S      +  P+PS         P   
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALE----KAPAKK 476

Query: 601 PPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
                    P++    PV +P       
Sbjct: 477 EAYRWKATNPVEVKKEPVATPKALKKAL 504

Length = 647

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 79.1 bits (195), Expect = 3e-15
 Identities = 51/202 (25%), Positives = 63/202 (31%), Gaps = 15/202 (7%)

Query: 434 PSSPTPTTMPPKQEPPPLVQSPP--PSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTP 491
              P P   P       L  S     S    ++    V  A        P+ PPP   T 
Sbjct: 19  EFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTE 78

Query: 492 QPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSP 551
            P+    S P    S   P+      SP P     P  PPP     P  +SPPP    SP
Sbjct: 79  APANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPP----TPPPASPPP----SP 130

Query: 552 PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPP-----PIQSPPPTSPPPPVGS 606
            P +     P   P   P        +SP    S +        P+ SP  T+  P    
Sbjct: 131 APDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPP 190

Query: 607 PPPPIQSPPPPVQSPPPPSPPP 628
             PP  +PP      PP    P
Sbjct: 191 AEPPPSTPPAAASPRPPRRSSP 212

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 79.1 bits (195), Expect = 3e-15
 Identities = 53/309 (17%), Positives = 77/309 (24%), Gaps = 55/309 (17%)

Query: 367 GSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRV-PRHKVP 425
            +     + P     T          A A    +    P A+P PP              
Sbjct: 388 AAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA 447

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
           P+  +    +S          +PP        +S P    PP     P P      ++ P
Sbjct: 448 PVPAKANARASADSRCDERDAQPPA---DSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

Query: 486 PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP----------------- 528
            A    +    P +            P P    P P  + P                   
Sbjct: 505 AAVPDAR---APAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGM 561

Query: 529 ------SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTP 582
                      +   P  +        +P   VQ P P +       PP  +    +   
Sbjct: 562 RVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAAR--AEQA 619

Query: 583 SPSPSPPPPIQSPPP-----------------------TSPPPPVGSPPPPIQSPPPPVQ 619
           + S   PPP +  PP                        S P  V   P P  +P PPV 
Sbjct: 620 AESRGAPPPWEDIPPDDYVPLSADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPPVD 679

Query: 620 SPPPPSPPP 628
           + P P   P
Sbjct: 680 TRPLPPAIP 688

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 77.2 bits (191), Expect = 9e-15
 Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 2/156 (1%)

Query: 471 SAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSP 530
           +AP P P   P S  PA S    + P  +  PP     PP P  +P   P V  P   S 
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421

Query: 531 PPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPP 590
              +     R+            P  +         L       P PS+   +P+     
Sbjct: 422 LLAARQQLQRAQGATKA--KKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY 479

Query: 591 PIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
             ++  P        + P  ++      ++P   + 
Sbjct: 480 RWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 76.9 bits (190), Expect = 1e-14
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 2/122 (1%)

Query: 507 PPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV 566
               +  P+ ++P    + P  +P P +  P   ++  P P+ +P P     P P+PP  
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPA--AAAAPAPAAAPQPAPAPAPAPAPPSP 444

Query: 567 LYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
               P    P   P  +PS  P P   + P  +  P    P  P  +  P   + P    
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504

Query: 627 PP 628
             
Sbjct: 505 GA 506

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 77.1 bits (190), Expect = 1e-14
 Identities = 54/275 (19%), Positives = 66/275 (24%), Gaps = 19/275 (6%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
              +  +  +P                 P   S  S   +SP P                
Sbjct: 179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSD 238

Query: 428 IVEPPK------PSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSP 481
                       P +  P   P     P  +      + P     P   S+ P    PSP
Sbjct: 239 SSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSP 298

Query: 482 SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRS 541
           S   P       SP   S      S    S   S SS          SP P     P  S
Sbjct: 299 SPSSPGSGPAPSSPRASSS----SSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPS 354

Query: 542 SPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSS-----PTPSPSPSPPPPIQSPP 596
            PP  P   P  P + P P   P        R     +            +        P
Sbjct: 355 RPP--PPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRP 412

Query: 597 PTSPPPPVGSPPPPIQSPPP--PVQSPPPPSPPPP 629
             SP     +        P   P   P P SPPPP
Sbjct: 413 RPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPPP 447

Length = 1352

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 76.7 bits (188), Expect = 2e-14
 Identities = 56/235 (23%), Positives = 78/235 (33%), Gaps = 35/235 (14%)

Query: 395 APPTPSLPSPPVASPTP----PTWEWNRVPRHKVP-PIIVEPPKPSSPTPTTMPPKQEPP 449
           AP  P   +PPVAS       PT  W  VP  +   P+I   P+          P  +  
Sbjct: 335 APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394

Query: 450 PLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPP 509
             +Q P     P   Y  P    P   P  +P+   PAQ   QP   P    P   +   
Sbjct: 395 EPLQQPVQPQQP---YYAPAAEQPAQQPYYAPAPEQPAQ---QPYYAPAPEQPVAGNAWQ 448

Query: 510 PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP-PTPSLSPPPPVQSPPPPSPPPVLY 568
                S  +P   Y        P +  P  +   P     +  P PV     P+ PP+ Y
Sbjct: 449 AEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYY 508

Query: 569 ----------------------PPPVRSPPPSSPT-PSPSPSPPPPIQSPPPTSP 600
                                 P PV+ P P   +  +PS +  PP+++    SP
Sbjct: 509 FEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP 563

Length = 1355

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 75.9 bits (187), Expect = 3e-14
 Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 3/130 (2%)

Query: 462 PVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPP 521
           P +       A   +P    ++ P A    Q +  P     P  +   P+  P+ + P P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 522 VYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPT 581
           V +P   +P       P   +  P P     P   + P    P    P    + P  +  
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE---PAVASAAPAPAAA 482

Query: 582 PSPSPSPPPP 591
           P+ +   P  
Sbjct: 483 PAAARLTPTE 492

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 75.7 bits (186), Expect = 3e-14
 Identities = 47/283 (16%), Positives = 72/283 (25%), Gaps = 40/283 (14%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
           GG  P          +   P         A   P++ +   A+                 
Sbjct: 364 GGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALA------------ 411

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPL---VQSPPPSSPPPVSYPPPVRSAPPPSPMPSPS 482
               +    ++ T    PP    PP              PV      R++          
Sbjct: 412 ---PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRC-DERD 467

Query: 483 SPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSS 542
           + PPA S    +P   + P     P P +  PS ++P  V     P+       P   + 
Sbjct: 468 AQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA- 526

Query: 543 PPPTPSLSPPPPVQSPPPP-------------------SPPPVLYPPPVRSPPPSSPTPS 583
            PP P   PP P  + P                     S            P  +     
Sbjct: 527 -PPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAP 585

Query: 584 PSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
              +P   +Q P P +      +PP          +S   P P
Sbjct: 586 KPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPP 628

Length = 830

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 74.8 bits (184), Expect = 5e-14
 Identities = 30/153 (19%), Positives = 47/153 (30%), Gaps = 24/153 (15%)

Query: 379 KPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPT 438
           KP+ +  A  P       P     + P A+P                         ++P 
Sbjct: 365 KPAAAAEAAAP--AEKKTPARPEAAAPAAAPVAQA--------------------AAAPA 402

Query: 439 PTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPV 498
           P   P      P    P  + P PV+ P     A  P+  P+  +  PA    Q +P  V
Sbjct: 403 PAAAPAAAASAP-AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPA-PPAQAAPETV 460

Query: 499 SYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPP 531
           + P  V   P  +      +  P  +   P+  
Sbjct: 461 AIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 40/137 (29%), Positives = 43/137 (31%), Gaps = 5/137 (3%)

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
            P P PP              S    P       +   PS PP S P       PP    
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDA-DPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 550 SPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPP 609
           SP      P P S      PP   SP   SP P P+  PPPP+Q  PP S   P     P
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPT----P 261

Query: 610 PIQSPPPPVQSPPPPSP 626
           P  S  P          
Sbjct: 262 PSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 75.2 bits (185), Expect = 6e-14
 Identities = 57/275 (20%), Positives = 72/275 (26%), Gaps = 23/275 (8%)

Query: 350 PVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASP 409
           P    P        S      S+P + +       P +     A A  + S  S      
Sbjct: 189 PPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCG 248

Query: 410 TPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPV 469
             P  E          P+    P               P         SS P    P P 
Sbjct: 249 WGPENE---------CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPS 299

Query: 470 RSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPS 529
            S+P   P PS      + S    S    S      S            P P  SP P  
Sbjct: 300 PSSPGSGPAPSSPRASSSSS----SSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355

Query: 530 PPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPP 589
           PPP + P   R  P P+ +  P  P  S   P+          R+    +    P+  P 
Sbjct: 356 PPPPADPSSPRKRPRPSRA--PSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPR 413

Query: 590 P------PIQSPPPTSPPP--PVGSPPPPIQSPPP 616
           P                P   P G P P    PPP
Sbjct: 414 PSPLDAGAASGAFYARYPLLTPSGEPWPGSPPPPP 448

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 74.6 bits (184), Expect = 8e-14
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP-PPPSPMPSPSSPPPVYS 524
                +  P +  PS ++  PA +    +  P +   P  +  P P+P P+P+  PP  +
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 525 PPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP 584
              P+    S PP    S  P P+ +  P   + P P+PP     P      P++P    
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAA-PAPAAAPAAPAAPAAPA 504

Query: 585 SPSP 588
               
Sbjct: 505 GADD 508

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 74.1 bits (183), Expect = 9e-14
 Identities = 24/161 (14%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPP 503
           P    P     P  ++P   +      +A      P  +   P      P   P    P 
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVA---PPQAPAVPPPPASAPQQAPAVPLPE 417

Query: 504 VRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP 563
             S    +      +           P   S   PV S+     S+ P P      P   
Sbjct: 418 TTSQLLAARQQLQRAQGAT-KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKK 476

Query: 564 PPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV 604
                    ++  P      P  +P    ++      P   
Sbjct: 477 E----AYRWKATNPVEVKKEPVATPKALKKALEHEKTPELA 513

Length = 647

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 46/161 (28%), Positives = 52/161 (32%), Gaps = 30/161 (18%)

Query: 438 TPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPP 497
            P   PP  E          +S                 P  +  S PP+ S   PS P 
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDA-------DPASASPSDPPSSSPGVPSFPS 199

Query: 498 VSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQS 557
                    PP     PS SS PP  S      PP S   P   SPPP P+  PPPPVQ 
Sbjct: 200 ---------PPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQ 250

Query: 558 PPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPT 598
            PP S                 PTP  + + P PI      
Sbjct: 251 VPPLSTAK--------------PTPPSASATPAPIGGITLD 277

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 74.4 bits (183), Expect = 1e-13
 Identities = 61/251 (24%), Positives = 71/251 (28%), Gaps = 39/251 (15%)

Query: 353 SKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPP 412
               D   D   WG +P   P  P         A E +     P    L    V +    
Sbjct: 114 EYIPDLQPDPSLWGTAPKPEPQPP--------QAPESQPQPQTPAQKMLSLEEVEA---- 161

Query: 413 TWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSA 472
                               +  +P     P +  P      PP  +  P   PP     
Sbjct: 162 ----------------QLQQRQQAPQLPQPPQQVLPQ---GMPPRQAAFPQQGPPEQPPG 202

Query: 473 PPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPP 532
            P  P   P    P Q  P PS  P   P P + P  P P+  P  P      PPP P  
Sbjct: 203 YPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPP-- 260

Query: 533 VSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPI 592
               PP +   PP P   PPP  Q  P P  P     P    PPP  P   P    P   
Sbjct: 261 ---QPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL---PPPQQPQLLPLVQQPQGQ 314

Query: 593 QSPPPTSPPPP 603
           Q  P       
Sbjct: 315 QRGPQFREQLV 325

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 27/184 (14%), Positives = 43/184 (23%), Gaps = 8/184 (4%)

Query: 447 EPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRS 506
           EP       P    P         + P P    + +      S                +
Sbjct: 359 EPAVTGGGAPGGGVPAR----VAGAVPAPGARAAAA---VGASAVPAVTAVTGAAGAALA 411

Query: 507 PPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV 566
           P   +   +  +  P  +P PP+            +P P  + +              P 
Sbjct: 412 PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPP 471

Query: 567 LYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSP-PPPVQSPPPPS 625
                  +P   +P  +     P        T    P    P        P   +PP P 
Sbjct: 472 ADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPE 531

Query: 626 PPPP 629
             PP
Sbjct: 532 ARPP 535

Length = 830

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 74.3 bits (182), Expect = 1e-13
 Identities = 71/262 (27%), Positives = 89/262 (33%), Gaps = 19/262 (7%)

Query: 373 PSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPP 432
              P+P P         ++P P  P+   P      P PP     +     +      PP
Sbjct: 235 QRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPP 294

Query: 433 KPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQ 492
           +P     + +PP          P PS   P S+ PP +SA  P   P     PPA S P 
Sbjct: 295 QPFGLAQSQVPP---------LPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPH 345

Query: 493 PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPP 552
             PPP + P P          P    P P    P   PPP +  P         PS  PP
Sbjct: 346 IKPPPTT-PIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPP 404

Query: 553 P------PVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
           P             P+ PPVL     +S PP + T   S     P QSP    P    G 
Sbjct: 405 PLQLMPQSQPLQSVPAQPPVL--TQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGL 462

Query: 607 PP-PPIQSPPPPVQSPPPPSPP 627
           P   P  S P    + PP +  
Sbjct: 463 PAIGPPPSLPTSTPAAPPRASS 484

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 34/132 (25%), Positives = 41/132 (31%), Gaps = 2/132 (1%)

Query: 472 APPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPP 531
            P P P           +T               S  P  P  S    P   SPP     
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 532 PVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPP 591
           P     P   +P    S +PPP  +SP  PSPPP    PP        P  +  P+PP  
Sbjct: 207 PSDSSLP--PAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264

Query: 592 IQSPPPTSPPPP 603
             +P P      
Sbjct: 265 SATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 73.2 bits (179), Expect = 2e-13
 Identities = 62/249 (24%), Positives = 87/249 (34%), Gaps = 2/249 (0%)

Query: 349 YPVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVAS 408
           +P  + P      +      P  + + P      S  A +P+ P    P P  PS P   
Sbjct: 288 HPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIK 347

Query: 409 PTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPP 468
           P P T       +    P  ++ P P    P+ +PP     PL  S  P+  PP ++PPP
Sbjct: 348 PPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPL--SSLPTHHPPSAHPPP 405

Query: 469 VRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP 528
           ++  P   P+ S  + PP  +  Q  PP  S  P       P   P    P      P  
Sbjct: 406 LQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAI 465

Query: 529 SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP 588
            PPP        + P  +    PP            P    PP++             SP
Sbjct: 466 GPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESP 525

Query: 589 PPPIQSPPP 597
           PPP +SP P
Sbjct: 526 PPPPRSPSP 534

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 72.7 bits (179), Expect = 3e-13
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 1/122 (0%)

Query: 481 PSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
             +               + P    +P   +P  + +  P     P P+P P   PP   
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
            + P   + SPPP       P+P P   P P  +P P +P  +P+P+  P   + P    
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAP-APPAAPAPAAAPAAPAAPAAPA 504

Query: 601 PP 602
             
Sbjct: 505 GA 506

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 72.4 bits (178), Expect = 3e-13
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 8/135 (5%)

Query: 448 PPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP 507
           P    ++  P+     +   P  +AP  +P  + ++  PA +    +       PP  +P
Sbjct: 366 PAAAAEAAAPAEKKTPA--RPEAAAPAAAP-VAQAAAAPAPAAAPAAAASAPAAPPAAAP 422

Query: 508 PPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVL 567
           P P      ++P        P+  P +            P     P   +P P       
Sbjct: 423 PAP-----VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAP 477

Query: 568 YPPPVRSPPPSSPTP 582
            P    +    +PT 
Sbjct: 478 APAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 71.7 bits (176), Expect = 5e-13
 Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 19/144 (13%)

Query: 394 PAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQ 453
           PA    +       +P  P                   P  +        P     P   
Sbjct: 366 PAAAAEAAAPAEKKTPARPE---------------AAAPAAAPVAQAAAAPAPAAAPAAA 410

Query: 454 SPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPM 513
           +  P++PP  + P PV +AP  +   +  +  PA     P+PP  + P  V  P   +P 
Sbjct: 411 ASAPAAPPAAAPPAPV-AAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE 469

Query: 514 PSPSSPPPVYSPPPPSPPPVSYPP 537
           P+ +S  P    P  +P      P
Sbjct: 470 PAVASAAP---APAAAPAAARLTP 490

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 71.6 bits (176), Expect = 7e-13
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 5/128 (3%)

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
                +  P +  PS ++  P  +P P +  P +   P   +P   P  +P P     PP
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAP---APAAAPQPAPAPAPAPAPP 442

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQS 620
                         PP ++P+  P+P+P    +     +P PP    P    +P  P   
Sbjct: 443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA--APAAPAAP 500

Query: 621 PPPPSPPP 628
             P     
Sbjct: 501 AAPAGADD 508

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 69.3 bits (170), Expect = 9e-13
 Identities = 30/129 (23%), Positives = 38/129 (29%), Gaps = 9/129 (6%)

Query: 425 PPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSP 484
           PP+  E         T             +    S PP S      S   PS    P  P
Sbjct: 152 PPLDEEDEDADVA-TTNSDNSFPGEDADPASASPSDPPSS------SPGVPSFPSPPEDP 204

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP 544
                +  P  P          PP P    +PS PP   +PPPP    V      + +PP
Sbjct: 205 SSPSDSSLPPAPS--SFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPP 262

Query: 545 PTPSLSPPP 553
              +   P 
Sbjct: 263 SASATPAPI 271

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 34/128 (26%), Positives = 39/128 (30%), Gaps = 8/128 (6%)

Query: 502 PPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPP 561
            P   PP                   P        P   S   P  S    P   SPP  
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDAD---PASASPSDPPSSSPGVPSFPSPPED 203

Query: 562 SPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSP 621
              P     P    P S  + +P PSP  P     P+ PP P   PPPP+Q  PP   + 
Sbjct: 204 PSSPSDSSLP--PAPSSFQSDTPPPSPESP---TNPSPPPGPAAPPPPPVQQVPPLSTAK 258

Query: 622 PPPSPPPP 629
           P P     
Sbjct: 259 PTPPSASA 266

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 70.9 bits (173), Expect = 1e-12
 Identities = 69/255 (27%), Positives = 91/255 (35%), Gaps = 11/255 (4%)

Query: 373 PSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPP 432
           PS+  P+P     +Q P  P P+   P   +PP  S   P       P    P +    P
Sbjct: 289 PSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKP 348

Query: 433 KPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPP---PSPMPSPSSPPPAQS 489
            P++P P       + PP +Q P P    P + PPP    P    P+  P  + PPP Q 
Sbjct: 349 PPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQL 408

Query: 490 TPQPSP-PPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPS 548
            PQ  P   V   PPV +     P  + + P       PP  P   +P      P   P 
Sbjct: 409 MPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPP 468

Query: 549 LSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPP 608
            S P    + PP +            PP S+   S   + P P   P      P   +  
Sbjct: 469 PSLPTSTPAAPPRASSGS-------QPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEE 521

Query: 609 PPIQSPPPPVQSPPP 623
           P    PPP   SP P
Sbjct: 522 PESPPPPPRSPSPEP 536

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 27/201 (13%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL 159
           +P  +G    L       N   G +P  F  +  +   D+SNN L G   +         
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 160 YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE------------------ 201
            L L  N F G LP       L+ + L+ N F G++P  +G                   
Sbjct: 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 202 ----SLARYIV---LSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNL 254
               S  + +V   LS N  +G +P S   M  L ++ L +NQLSG +P  +G+ E  +L
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE--SL 573

Query: 255 TVFDIRSNKFHGSVPQSFANL 275
              +I  N  HGS+P + A L
Sbjct: 574 VQVNISHNHLHGSLPSTGAFL 594

Length = 968

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.6 bits (171), Expect = 3e-12
 Identities = 28/123 (22%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPP 503
               P     S   ++P     P     A   +P P+ +  P     P P+PP  +   P
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449

Query: 504 VRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP 563
               P P P  +PS+ P   +P P + P  +  P       P P+ +P  P     P   
Sbjct: 450 AGGAPSPPPAAAPSAQP---APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Query: 564 PPV 566
              
Sbjct: 507 DDA 509

Length = 824

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 68.6 bits (167), Expect = 6e-12
 Identities = 74/338 (21%), Positives = 101/338 (29%), Gaps = 51/338 (15%)

Query: 342 QKLPTECYPVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPK----------- 390
           Q L  +  P +  P   +    +   +P +    P   P  + PA +P+           
Sbjct: 171 QLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAP 230

Query: 391 ----------------------TPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPII 428
                                 +P P  P+   P      P PP     +     +    
Sbjct: 231 SLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPS 290

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYP--PPVRSAPPPSPMPSPSSPPP 486
             PP+P     + +PP   P                 P  PP     PP+P      PPP
Sbjct: 291 SNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPP 350

Query: 487 AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP---PPPSPPPVSYPPPVRSSP 543
               PQ       +PP ++ P P   MPS   PPP   P    P   PP ++PPP++  P
Sbjct: 351 TTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMP 410

Query: 544 PPTPSLSP-------------PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPP 590
              P  S              PP   + P           P    P +S        PP 
Sbjct: 411 QSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPS 470

Query: 591 PIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
              S P   P    GS PP    P     + P P  PP
Sbjct: 471 LPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPP 508

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.1 bits (167), Expect = 7e-12
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSA-PPPSPMPSPSSPPPAQS 489
                +  P    P         +P P++  P +   P  +A P P+P P+P+  PP+ +
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPS 548
              P+    S PP       P+P P+ +  P     P P   P     P   + P  P+
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504

Length = 824

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.3 bits (167), Expect = 7e-12
 Identities = 31/220 (14%), Positives = 48/220 (21%), Gaps = 29/220 (13%)

Query: 436 SPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS-----T 490
           +P                +    +      P    +A        P++P P  +      
Sbjct: 382 APGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDD 441

Query: 491 PQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLS 550
                 PV      R+          + PP        S P    PP     P P  +  
Sbjct: 442 AADGDAPVPAKANARASADSRCDERDAQPPA--DSGSASAPASDAPPDAAFEPAPRAAAP 499

Query: 551 PPPPVQSPPPPSPPPVL----YPPPVRSPPPSSPTPSPSPSPPPP--------------- 591
                 + P    P        P     P P +  P+P+ + P                 
Sbjct: 500 SAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNA 559

Query: 592 ---IQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
              + S               P  +P P         P P
Sbjct: 560 GMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTP 599

Length = 830

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 30/141 (21%), Positives = 41/141 (29%), Gaps = 16/141 (11%)

Query: 470 RSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPS 529
           R    P+      +  P+       P   + P      PP + +P   +P P    P P 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 530 PPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPP 589
             P   P P               P+Q P  P   P    P      P     +  P+ P
Sbjct: 130 QQPAYQPQP-------------EQPLQQPVSPQVAP---APQPVHSAPQPAQQAFQPAEP 173

Query: 590 PPIQSPPPTSPPPPVGSPPPP 610
                P P + P PV   P  
Sbjct: 174 VAAPQPEPVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 67.6 bits (166), Expect = 9e-12
 Identities = 25/159 (15%), Positives = 44/159 (27%), Gaps = 14/159 (8%)

Query: 432 PKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPP--PSPMPSPSSPPPAQS 489
           P+P  P  +  P          +   + P   + PPP  SAP   P+     ++     +
Sbjct: 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAA 425

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
             Q      +       P   S             P   +   ++   P  S+    P+ 
Sbjct: 426 RQQLQRAQGATKAKKSEPAAASRAR----------PVNSALERLASVRPAPSALEKAPAK 475

Query: 550 SPPPPV--QSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
                    +P      PV  P  ++       TP  + 
Sbjct: 476 KEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514

Length = 647

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 67.8 bits (165), Expect = 9e-12
 Identities = 72/275 (26%), Positives = 91/275 (33%), Gaps = 18/275 (6%)

Query: 371 STPSAPTPKP----STSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
           S+PS P+P+     S S+  Q+   P   P     P   +A   PP     +    +  P
Sbjct: 150 SSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSP 209

Query: 427 IIVEPPKPSSPTPTTM---PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSS 483
           I  +P               P   P  L    PP  P   S   P   AP      S   
Sbjct: 210 IAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHH 269

Query: 484 PPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSP 543
            P           PV    P  +PP P  + + S  PP+  P    P   + P      P
Sbjct: 270 GPGPPMPHALQQGPVFLQHPSSNPPQPFGL-AQSQVPPLPLPSQAQPHSHTPPSQSALQP 328

Query: 544 PPTPSLSPPPPV----QSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPS-----PPPPIQS 594
              P   P PP        PPP+ P    P      PP    PSP P      PPPP   
Sbjct: 329 QQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALK 388

Query: 595 PPPTSPPP-PVGSPPPPIQSPPPPVQSPPPPSPPP 628
           P  + P   P  + PPP+Q  P        P+ PP
Sbjct: 389 PLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPP 423

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 67.7 bits (165), Expect = 1e-11
 Identities = 48/214 (22%), Positives = 68/214 (31%), Gaps = 11/214 (5%)

Query: 420 PRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP 479
           P   V       P+ +       PP +   P       ++PP   +   +  AP   P P
Sbjct: 257 PPPVVGEGADRAPETARGATGPPPPPEAAAP----NGAAAPPDGVWGAALAGAPLALPAP 312

Query: 480 SPSSPPPAQSTPQPSPPP---VSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYP 536
               PP      +        +    P+  P    P+  P    P ++PP       +  
Sbjct: 313 PDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGR 372

Query: 537 PPVRSSPPPTPSLSPPP----PVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPI 592
              + +  PT           P    P          P   S P  +PTP P+ +PPPP 
Sbjct: 373 HHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPA 432

Query: 593 QSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
              P   P    G  PPP + PP P   P P  P
Sbjct: 433 TPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDP 466

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 67.9 bits (166), Expect = 1e-11
 Identities = 37/177 (20%), Positives = 46/177 (25%), Gaps = 1/177 (0%)

Query: 454 SPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPM 513
                 PP                     S   A  T            P   PPP    
Sbjct: 18  GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGT 77

Query: 514 PSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP-PSPPPVLYPPPV 572
            +P++          S    + P    S  PP PS   PPP   PP  P P P      +
Sbjct: 78  EAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEM 137

Query: 573 RSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
             P  S   P  +  P          S          P+ SP    ++P  P   PP
Sbjct: 138 LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

Length = 1352

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 67.5 bits (165), Expect = 1e-11
 Identities = 54/229 (23%), Positives = 68/229 (29%), Gaps = 13/229 (5%)

Query: 370 PSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWE--WNRVPRHKVPPI 427
           P       P PS    A +P+ P P     S P P   +    + E    ++ + +  P 
Sbjct: 113 PEYIPDLQPDPSLWGTAPKPE-PQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQ 171

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
           + +PP+   P          P       PP  P P   P        P       S  PA
Sbjct: 172 LPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQP---PQGHPEQVQPQQFLPAPSQAPA 228

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSP-MPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
           Q    P  P    P      P  S  MP P   PP     P  P P + PPP     P  
Sbjct: 229 QPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQP--PQPQAQPPPQNQPTPHP 286

Query: 547 PSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
                 P  Q+ P P P      P V+ P      P          Q  
Sbjct: 287 ----GLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQ 331

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 67.8 bits (165), Expect = 1e-11
 Identities = 40/169 (23%), Positives = 52/169 (30%), Gaps = 5/169 (2%)

Query: 462 PVSYPPPVRSAPPPSPMPSPS-SPPPAQSTPQPS--PPPVSYPPPVRSPPPPSPMPSPSS 518
           PV+  PPV S   P   P+ +  P P   T +P   P P  YP   +   P      P  
Sbjct: 339 PVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQ 398

Query: 519 PPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPS 578
            P     P  +P           +P P      P    +P  P           +S    
Sbjct: 399 QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAP 458

Query: 579 SPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
             T     +   P    P    P PV     P+  P P V+   P  PP
Sbjct: 459 QSTYQTEQTYQQPAAQEPLYQQPQPV--EQQPVVEPEPVVEETKPARPP 505

Length = 1355

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 66.7 bits (163), Expect = 2e-11
 Identities = 38/174 (21%), Positives = 43/174 (24%), Gaps = 16/174 (9%)

Query: 469 VRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP 528
                P     S  S   +  +P  S    S  P     P   P PS     P   P PP
Sbjct: 80  NAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDP--EYIPDLQPDPSLWGTAPKPEPQPP 137

Query: 529 SPPPVSYPPPVRSSPP-------------PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP 575
             P     P   +                      P PP Q  P   PP      P + P
Sbjct: 138 QAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQ-AAFPQQGP 196

Query: 576 PPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           P   P     P   P    P    P P      PP+    P    P      P 
Sbjct: 197 PEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPG 250

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 469 VRSAPPPSPM-PSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPP 527
           +   P P P  P+ ++P P + TP PS  P        + PP  P+   ++PPPV  PP 
Sbjct: 360 LVPVPAPQPAKPTAAAPSPVRPTPAPSTRPK--AAAAANIPPKEPVRETATPPPV--PPR 415

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP 563
           P  PPV + P                P  +PP P  
Sbjct: 416 PVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 34/180 (18%), Positives = 43/180 (23%), Gaps = 5/180 (2%)

Query: 450 PLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPP 509
           P    P P  P       P    P   P      P      P         P    + P 
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQL-PTARPAYPA 148

Query: 510 PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP 569
               P P + P            + +PP    +P  +P+   P   +   P       Y 
Sbjct: 149 YQQRPEPGAWPRAADDYGWQQQRLGFPPR---APYASPASYAPEQERDREPYDAGRPEYD 205

Query: 570 PPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPP-IQSPPPPVQSPPPPSPPP 628
              R      P              PPP +     G P PP     P     P  P P  
Sbjct: 206 QRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLA 265

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 42/200 (21%), Positives = 51/200 (25%), Gaps = 13/200 (6%)

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPP 486
           I V+P       P     +   P L   P          P      P         +  P
Sbjct: 86  ITVDPSAGEPAPPPPHARRTSEPEL-PRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARP 144

Query: 487 AQSTPQPSPPPVSYPPPVRS---------PPPPSPMPSPSSPPPVYSP--PPPSPPPVSY 535
           A    Q  P P ++P               PP +P  SP+S  P       P       Y
Sbjct: 145 AYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEY 204

Query: 536 PPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
               R    P P     P       P PPP         P P     +P     P    P
Sbjct: 205 DQRRRDYDHPRPD-WDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGP 263

Query: 596 PPTSPPPPVGSPPPPIQSPP 615
               P P  G   P  +  P
Sbjct: 264 LAAQPAPAPGPGEPTARLNP 283

Length = 617

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 66.5 bits (162), Expect = 2e-11
 Identities = 70/262 (26%), Positives = 88/262 (33%), Gaps = 18/262 (6%)

Query: 375 APTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKP 434
           A T  P T       K P+   P     +     P P        P    PPI  EPP+P
Sbjct: 307 AETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTK---PVTPEAPSPPIEEEPPQP 363

Query: 435 SSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPS 494
            +  P  + P      L    PP+SP P        S+ P S     +   PA+    PS
Sbjct: 364 KAVVPRPLSPYTAYEDL---KPPTSPIPTP-----PSSSPASSKSVDAVAKPAEPDVVPS 415

Query: 495 PPPVSYPPPVRSPPPPSPMPSPSSPPPVY-------SPPPPSPPPVSYPPPVRSSPPPTP 547
           P   S  P V      +    P SP   Y       SP P +P  VS      SS P  P
Sbjct: 416 PGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVP 475

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP 607
             +P         P P  +    P        P  SPSP+ P    +P  T+    VG+ 
Sbjct: 476 DTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNS 535

Query: 608 PPPIQSPPPPVQSPPPPSPPPP 629
            PP         + P P P  P
Sbjct: 536 APPTALADEQHHAQPKPRPLSP 557

Length = 576

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 27/97 (27%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
            P  + A P +  PSP  P PA ST  P     +  PP    P       P  PP   +P
Sbjct: 363 VPAPQPAKPTAAAPSPVRPTPAPSTR-PKAAAAANIPPK--EPVRETATPPPVPPRPVAP 419

Query: 526 PPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPS 562
           P P  P  +      + P        PP     PP  
Sbjct: 420 PVPHTPESAPKLTRAAIPVDEKPKYTPP----APPKE 452

Length = 585

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 65.3 bits (160), Expect = 5e-11
 Identities = 34/193 (17%), Positives = 44/193 (22%), Gaps = 34/193 (17%)

Query: 389 PKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEP 448
           P  P P P  P   + P AS                          +  T         P
Sbjct: 361 PAAPLPEPEVPPQSAAPAAS--------------------------AQATAAPTAAVAPP 394

Query: 449 PPLVQSPPPSSPPPVSYPPPVRSAPPP--SPMPSPSSPPPAQSTPQPSPPPVSYPPPVRS 506
                 PPP+S P  +   P+        +          A    +  P   S   PV S
Sbjct: 395 QAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNS 454

Query: 507 P----PPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPS 562
                    P PS     P            + P  V+  P  TP            P  
Sbjct: 455 ALERLASVRPAPSALEKAPAKKEAYRWKA--TNPVEVKKEPVATPKALKKALEHEKTPEL 512

Query: 563 PPPVLYPPPVRSP 575
              +      R P
Sbjct: 513 AAKLAAEAIERDP 525

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 65.3 bits (160), Expect = 5e-11
 Identities = 21/118 (17%), Positives = 30/118 (25%), Gaps = 2/118 (1%)

Query: 514 PSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVR 573
           P+   P P   P   +P   +      ++    P     PP  +  P   P V  P    
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 574 S-PPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPP-PVQSPPPPSPPPP 629
                         +       P   S   PV S    + S  P P      P+    
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA 478

Length = 647

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 30/125 (24%), Positives = 40/125 (32%), Gaps = 3/125 (2%)

Query: 503 PVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPS 562
            V   P  +     + P P +   PP        P  +      P    P P Q  P P 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 563 PPPVLYPP---PVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQ 619
             P   P    P++ P      P+P P    P  +     P  PV +P P   + P PV 
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVM 189

Query: 620 SPPPP 624
             P  
Sbjct: 190 DKPKR 194

Length = 333

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 65.1 bits (159), Expect = 6e-11
 Identities = 27/129 (20%), Positives = 39/129 (30%), Gaps = 14/129 (10%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
             P+ P A  P  +    A     PA AP   +  S P A P               PP 
Sbjct: 379 KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAA--SAPAAPPAA------------APPA 424

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
            V  P  ++P                 P  ++P  V+ P  V   P  +      +  PA
Sbjct: 425 PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484

Query: 488 QSTPQPSPP 496
            +   P+  
Sbjct: 485 AARLTPTEE 493

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 65.7 bits (160), Expect = 7e-11
 Identities = 46/158 (29%), Positives = 49/158 (31%), Gaps = 25/158 (15%)

Query: 493  PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPP 552
            P  P    P   R P      P P    P   P P +PP  S   P      P      P
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGP---PDPDAPPAPSRLAPAILPDEPVGEPVHP 2531

Query: 553  --------------PPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP--------SPPP 590
                               PPPP PP      P RS PP  P P PS          P  
Sbjct: 2532 RMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDA 2591

Query: 591  PIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
            P QS  P +P    G P  P    P P  +  P  PPP
Sbjct: 2592 PPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP 2629

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.4 bits (157), Expect = 8e-11
 Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 13/101 (12%)

Query: 493 PSPPPVSYPPPVRSPPPPSPMPSPSSPPP--VYSPPPPSPPPVSYPPPVRSSPPPTPSLS 550
           P P P    P   +P P  P P+PS+ P     +  PP         PVR +  P P   
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPK-------EPVRETATPPP--V 412

Query: 551 PPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPP 591
           PP PV  P P +P     P   R+  P    P  +P  PP 
Sbjct: 413 PPRPVAPPVPHTPESA--PKLTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 27/128 (21%), Positives = 34/128 (26%), Gaps = 2/128 (1%)

Query: 420 PRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP 479
           P  +           S  +                P  S   P    PP   + P     
Sbjct: 153 PLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSL 212

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV 539
            P   P +  +  P P P S   P   P P +P P P    P  S   P+PP  S  P  
Sbjct: 213 PP--APSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAP 270

Query: 540 RSSPPPTP 547
                   
Sbjct: 271 IGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 548 SLSPPPPVQ--SPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVG 605
            L P P  Q   P   +P PV   P   + P ++   +  P  P    + PP  PP PV 
Sbjct: 359 LLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVA 418

Query: 606 SPPPPIQSPPP-------PVQSPPPPSPPPP 629
            P P      P       PV   P  +PP P
Sbjct: 419 PPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 64.7 bits (157), Expect = 1e-10
 Identities = 64/214 (29%), Positives = 84/214 (39%), Gaps = 22/214 (10%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSP-PPSSPPPVSYPPPVRSAP--PPSPMPSPSSPPP 486
           EPP   S  P T  P+Q P PL   P  P    P+++   V   P  PP    +P  P  
Sbjct: 607 EPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTW 666

Query: 487 AQSTPQPSPP---------PVSYPPPVRSPPP--PSPMPSPSSPPPVYSPPPPSPPPVSY 535
            Q    P  P         P+ + P    PPP  P+PM  P++PP     P  +      
Sbjct: 667 TQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARP 726

Query: 536 PPPVRSSP-PPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP--PPSSPTPSPSPSPPPPI 592
           P        PP  +     P  + P  + PP   P   R P   P +PTP P P  PP  
Sbjct: 727 PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAP 786

Query: 593 QSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
           Q  P  +P     +P PP Q+ P  +Q  P  +P
Sbjct: 787 QQRPRGAP-----TPQPPPQAGPTSMQLMPRAAP 815

Length = 991

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 23/137 (16%), Positives = 35/137 (25%), Gaps = 13/137 (9%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
             +  +   A    P+    A     P         P+   A+                 
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP----------AA 416

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
           P    PP P +      P               +PP  + P  V      +P P+ +S  
Sbjct: 417 PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA 476

Query: 486 PAQSTPQPSPPPVSYPP 502
           PA   P  +P      P
Sbjct: 477 PA---PAAAPAAARLTP 490

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 50/272 (18%), Positives = 85/272 (31%), Gaps = 20/272 (7%)

Query: 350 PVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASP 409
           P  +     + D      +       P    + ++           PP  S  +   AS 
Sbjct: 426 PPAAPAPPATADRG--DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASD 483

Query: 410 TPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPP-PVSYPPP 468
            PP   +   PR   P        P +  P     +  P       P + PP P +  P 
Sbjct: 484 APPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543

Query: 469 VRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPP-PVYSPPP 527
            R+    + +    +     S+ + +    +  P   + P  +P P+       V +P  
Sbjct: 544 ARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPA--AAPAAAPKPAAPRVAVQVPTPRA 601

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV-----LYPP-----PVRSPPP 577
            +    + P     +     S   PPP +  PP    P+        P     PV    P
Sbjct: 602 RAATGDAPPNGAARAEQAAESRGAPPPWEDIPPDDYVPLSADEGFGGPDDGFVPVFDSGP 661

Query: 578 S----SPTPSPSPSPPPPIQSPPPTSPPPPVG 605
                +P P+ +P+PP   +  PP  P   +G
Sbjct: 662 DDVRVAPKPADAPAPPVDTRPLPPAIPLDAIG 693

Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 29/110 (26%), Positives = 33/110 (30%), Gaps = 20/110 (18%)

Query: 519 PPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPS 578
           P P   P  P+      P PVR  P P PS  P     +  PP  P              
Sbjct: 362 PVPAPQPAKPTAAA---PSPVR--PTPAPSTRPKAAAAANIPPKEPV-----------RE 405

Query: 579 SPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
           + TP P P  P      PP    P           P        PP+PP 
Sbjct: 406 TATPPPVPPRP----VAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 63.9 bits (155), Expect = 2e-10
 Identities = 57/262 (21%), Positives = 83/262 (31%), Gaps = 7/262 (2%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
           S PS    P P P  S   + P T +  P T +    P+     P       P      +
Sbjct: 588 SAPSYAQTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLV 647

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
              P +P     T   P       +   P  +      P          P  +P+   P 
Sbjct: 648 FPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPP 707

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
            + P  +  P +     R P        P +  P  + PP + P  + PP         P
Sbjct: 708 AAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPP 767

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP-SPPPPIQSPPPTSPPPPVGS 606
           + +P       P P PPP   PP  +  P  +PTP P P + P  +Q  P  +P     +
Sbjct: 768 AAAP-----GAPTPQPPPQA-PPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPT 821

Query: 607 PPPPIQSPPPPVQSPPPPSPPP 628
                Q     V+   P    P
Sbjct: 822 KQILRQLLTGGVKRGRPSLKKP 843

Length = 991

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 31/119 (26%), Positives = 38/119 (31%), Gaps = 29/119 (24%)

Query: 508 PPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVL 567
           P P+P P+         P   +P PV         P P PS  P     +  PP      
Sbjct: 362 PVPAPQPAK--------PTAAAPSPV--------RPTPAPSTRPKAAAAANIPPK----- 400

Query: 568 YPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
              PVR          P P PP P+  P P +P          I     P  +PP P  
Sbjct: 401 --EPVRETAT------PPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.6 bits (152), Expect = 4e-10
 Identities = 30/160 (18%), Positives = 43/160 (26%), Gaps = 6/160 (3%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
             +  S           ++       PAPAP   + P+                      
Sbjct: 422 APARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRP--VAAAAAAA 479

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
           P    P    +P     PP +E PP   SP P+ P     P    +   P P  +     
Sbjct: 480 PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAA--PAGWVAESIPDPATADPDDA 537

Query: 486 PAQSTPQPSPPPVSYP--PPVRSPPPPSPMPSPSSPPPVY 523
                P P+  P             P  P  S S  P ++
Sbjct: 538 FETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMF 577

Length = 700

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 31/124 (25%), Positives = 40/124 (32%), Gaps = 2/124 (1%)

Query: 454 SPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPM 513
           +  P++        P        P  S     P Q  P+   PP   P P +  P P P+
Sbjct: 72  NHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQ--PAPQPV 129

Query: 514 PSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVR 573
             P+  P    P      P   P P      P P+     P +    P P PV  P PV 
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVM 189

Query: 574 SPPP 577
             P 
Sbjct: 190 DKPK 193

Length = 333

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 62.2 bits (151), Expect = 5e-10
 Identities = 37/201 (18%), Positives = 45/201 (22%), Gaps = 15/201 (7%)

Query: 395 APPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQS 454
               PS   P    P         +PR          P      P         P   Q 
Sbjct: 86  ITVDPSAGEPAPPPPHARRTSEPELPRPG------RRPYEGYGGPRADDRPPGLPRQDQL 139

Query: 455 PPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSP-M 513
           P      P          P P   P  +     Q      PP   Y  P    P      
Sbjct: 140 PTARPAYPAYQQR-----PEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDR 194

Query: 514 PSPSSPPPVYSPPPPS---PPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPP 570
               +  P Y         P P    P    +  P P        +  P P         
Sbjct: 195 EPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVV 254

Query: 571 PVRSPPPSSPTPSPSPSPPPP 591
           P+R   P      P+P+P P 
Sbjct: 255 PIRPSAPGPLAAQPAPAPGPG 275

Length = 617

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 62.3 bits (151), Expect = 7e-10
 Identities = 51/236 (21%), Positives = 72/236 (30%), Gaps = 8/236 (3%)

Query: 370 PSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIV 429
           P+ P         +       T  P PP  + P+   A P    W          P  + 
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPP-DGVWG---AALAGAPLALP 310

Query: 430 EPPKPSSPTPTTMPPKQEPPP---LVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPP 486
            PP P  P P     +++       V SP P          P R  P  +P  S      
Sbjct: 311 APPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSA 370

Query: 487 AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
            +  P+ +  P       R    P             + P P+  P   P PV +S PP 
Sbjct: 371 GRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPP 430

Query: 547 PSLSPPPP-VQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
           P+   P     S   P+PPP   PP   + P        +      ++   P  PP
Sbjct: 431 PATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPP 486

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 61.5 bits (149), Expect = 1e-09
 Identities = 47/223 (21%), Positives = 65/223 (29%), Gaps = 25/223 (11%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPP----------TPSLPSPPVASPTPPTWE 415
               P T    T  P     A  P   A  P             +LP+PP   P  P  +
Sbjct: 265 ADRAPETARGATGPPPPPEAAA-PNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGD 323

Query: 416 WNRVPRH-KVPPIIVEPPKPSSPTPTTMPPKQEP---PPLV-------QSPPPSSPPPVS 464
                       ++   P+P    P   P ++ P   PP         +  P  +  P  
Sbjct: 324 AEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTR 383

Query: 465 YPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPV---RSPPPPSPMPSPSSPPP 521
                R A  P             + P P+  P   P PV     PPP +P+PS      
Sbjct: 384 KRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSD 443

Query: 522 VYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
               PPP   P +         P   +      ++   PP PP
Sbjct: 444 DGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPP 486

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 61.2 bits (149), Expect = 1e-09
 Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 15/132 (11%)

Query: 389 PKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEP 448
                 A    +  + P A+P P                       +        P   P
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAAAA--------------PAAAAAPAPAAAPQPAPAP 435

Query: 449 PPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPP 508
            P    P P+   P    P    A  PS  P+P+     + T  P+P P + P P  +P 
Sbjct: 436 APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPA 495

Query: 509 PPSPMPSPSSPP 520
            P+  P+  +  
Sbjct: 496 APAA-PAAPAGA 506

Length = 824

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 443 PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPP 502
             + E            P   + P      PP + +P   +P PAQ  PQP   P   P 
Sbjct: 78  AQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQ 137

Query: 503 PVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
           P +    P       +P PV+S P P+        PV ++P P P   P P +  P  
Sbjct: 138 PEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV-AAPQPEPVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
           ++E      P P    P    P  V+     +P P + P    +A  P   P   +  P 
Sbjct: 355 VIEALLVPVPAPQPAKPTAAAPSPVRP----TPAPSTRPKAAAAANIPPKEPVRETATPP 410

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSP 530
              P+P  PPV + P   S P  +    P    P Y+PP P  
Sbjct: 411 PVPPRPVAPPVPHTPE--SAPKLTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 32/149 (21%), Positives = 42/149 (28%), Gaps = 12/149 (8%)

Query: 455 PPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMP 514
           P P +PPPV+  P     PPP+           Q    P+  P +  PP     P  P  
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSP-AANPPATFALPAGPAG 109

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS 574
                 P    P   P  V+  P       P    +     Q    P+           S
Sbjct: 110 PTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPA-----------S 158

Query: 575 PPPSSPTPSPSPSPPPPIQSPPPTSPPPP 603
               S   S   +    +Q  P    PP 
Sbjct: 159 GQLPSQQQSAQKNDESQLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 61/227 (26%), Positives = 68/227 (29%), Gaps = 4/227 (1%)

Query: 405 PVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVS 464
           P A       E    P  +V   +   P P SP P      Q PP              S
Sbjct: 50  PPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQS 109

Query: 465 YPPPVRSAPPP-SPMPSPSSPPPAQS--TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPP 521
            P        P  P PS   PPPAQ     QP PPP          PP  P    + PP 
Sbjct: 110 VPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQ 169

Query: 522 VYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVL-YPPPVRSPPPSSP 580
             S P  S       P    S PP   L     +Q P   +PP    Y PP  SP     
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG 229

Query: 581 TPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
                 S  P  Q PPP+      G   PP         +   P   
Sbjct: 230 PGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGS 276

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.3 bits (147), Expect = 2e-09
 Identities = 27/163 (16%), Positives = 40/163 (24%), Gaps = 13/163 (7%)

Query: 370 PSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIV 429
           P+ P      P  S           AP     P    A P PP                 
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPA-----------SAPQQ 409

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
            P  P     TT         L ++   +           R+ P  S +   +S  PA S
Sbjct: 410 APAVP--LPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPS 467

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPP 532
             + +P          + P        ++P  +         P
Sbjct: 468 ALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510

Length = 647

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 63/258 (24%), Positives = 78/258 (30%), Gaps = 18/258 (6%)

Query: 378 PKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKP-SS 436
             P  S  A  PK     P TP  PSPP      P      VPR   P    E  KP +S
Sbjct: 328 VPPKESDAADGPKPVPTKPVTPEAPSPP--IEEEPPQPKAVVPRPLSPYTAYEDLKPPTS 385

Query: 437 PTPT-TMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSP 495
           P PT           +     P+ P  V  P    + P   P    +         +P  
Sbjct: 386 PIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAK------KTRPLS 439

Query: 496 PPVSY----PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSP 551
           P   Y    PP   SP  P+ +    S        P + P  +        P     LSP
Sbjct: 440 PYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSP 499

Query: 552 PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPP--PIQSPPPTSPPPPVGSPPP 609
                   PP+ P    P    +P  ++       S PP           P P   SP  
Sbjct: 500 YAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPYT 559

Query: 610 PIQSPPPPVQSPPPPSPP 627
             +   PP    P PSP 
Sbjct: 560 MYEDLKPPTS--PTPSPV 575

Length = 576

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 209 LSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268
           L +    G +P  I  ++ LQ I L  N + G +P  +GS    +L V D+  N F+GS+
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNSFNGSI 482

Query: 269 PQSFANLNNIMRLDISDNMLTGFVSADICKLP-HLLNFTFSNN 310
           P+S   L ++  L+++ N L+G V A +     H  +F F++N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.9 bits (145), Expect = 3e-09
 Identities = 34/199 (17%), Positives = 54/199 (27%), Gaps = 28/199 (14%)

Query: 370 PSTPSAPTPKPSTSTPAQEPKTPAPAPP---TPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
               +AP P    + PA  P   A A      P+  SP   +         R P     P
Sbjct: 391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSS-------------------PPPVSYPP 467
                  P++         +       + P  +                   PP  + P 
Sbjct: 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPA 510

Query: 468 PVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPP 527
           P +    P+   + S P PA + P  +         +   P  +P P  ++       P 
Sbjct: 511 PAQPDAAPAGWVAESIPDPATADPDDA------FETLAPAPAAAPAPRAAAATEPVVAPR 564

Query: 528 PSPPPVSYPPPVRSSPPPT 546
           P     S  P +     P 
Sbjct: 565 PPRASASGLPDMFDGDWPA 583

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
            S   + +   PPP Q  PPP  P    P P  + PP +P     P PPP        +P
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTP-----PPPPPTATQASSNAP 567

Query: 601 PPPVGSPPPPIQSPPPPVQSPPPPSPP 627
                   PP   P  P  SP   S P
Sbjct: 568 AQIPADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.8 bits (143), Expect = 5e-09
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 533 VSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP-PPSSPTPSPSPSPPPP 591
           +       +     PS +   P  +P P +  P     P  +  P  +P P+P+P+PP P
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

Query: 592 IQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
             + P    P P  +  P  Q  P P  +P P + P P
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAP 482

Length = 824

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 58.9 bits (142), Expect = 5e-09
 Identities = 50/202 (24%), Positives = 62/202 (30%), Gaps = 6/202 (2%)

Query: 434 PSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQP 493
           PS P+P       +     Q   P  PP +  PP    AP   P    +   P Q +P  
Sbjct: 152 PSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIA 211

Query: 494 SPPPVSYPPPVRSPPPPSP------MPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
           + P      P       +P      +PSP  P    +    SP P +       S    P
Sbjct: 212 AQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGP 271

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP 607
               P  +Q  P     P   PP       S   P P PS   P    PP+        P
Sbjct: 272 GPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQP 331

Query: 608 PPPIQSPPPPVQSPPPPSPPPP 629
           P     PP P      P P  P
Sbjct: 332 PREQPLPPAPSMPHIKPPPTTP 353

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 58.8 bits (142), Expect = 5e-09
 Identities = 65/236 (27%), Positives = 86/236 (36%), Gaps = 24/236 (10%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTP-----SLPSPPVASPTPPTWEWNRVPRH 422
           + P TP AP+P P    P Q PK   P P +P      L  P    PTPP+         
Sbjct: 344 TKPVTPEAPSP-PIEEEPPQ-PKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSV 401

Query: 423 KVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQ------SP--------PPSSPPPVSYPPP 468
                  EP    SP   +  P+ EP  +        SP        PP+SP P +    
Sbjct: 402 DAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGV 461

Query: 469 VRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP 528
             S    S +P+     PA +    + PP +   P+        +  P+SP P       
Sbjct: 462 SPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKV 521

Query: 529 SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP 584
           +P   +    V +S PPT         Q  P P  P   Y       PP+SPTPSP
Sbjct: 522 APSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSP---YTMYEDLKPPTSPTPSP 574

Length = 576

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 45/197 (22%), Positives = 60/197 (30%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
           +     + +        +      +P   +   ++  P  +      P P+P SP P Q 
Sbjct: 28  QLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQ 87

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
               +PP   YP  +      S    P+     Y PPP  P P     P    P P P +
Sbjct: 88  QQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQV 147

Query: 550 SPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPP 609
                 QSPP         PP  +S P  S          P    P    P      PP 
Sbjct: 148 PQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPY 207

Query: 610 PIQSPPPPVQSPPPPSP 626
               P      PP PSP
Sbjct: 208 SGAPPSQQFYGPPQPSP 224

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 48/200 (24%), Positives = 58/200 (29%), Gaps = 1/200 (0%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSP-PPAQS 489
           P + +       P +Q    L  +P P SP P              P   P         
Sbjct: 53  PEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQ 112

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
            P P   P   PP    PPP     +    PP   P           P  + +PPP    
Sbjct: 113 QPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQS 172

Query: 550 SPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPP 609
           +P      P      P  YPP    P   +  P  S +PP      PP   P   G P  
Sbjct: 173 APQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGG 232

Query: 610 PIQSPPPPVQSPPPPSPPPP 629
              S  P  Q PPP      
Sbjct: 233 RPNSGFPSGQQPPPSQGQEG 252

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 58.7 bits (143), Expect = 7e-09
 Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 3/78 (3%)

Query: 552 PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPI 611
           P    +P   +           + P +    +P+P+PP       P +PP P  +     
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA---AAPAAPPKPAAAAAAAA 94

Query: 612 QSPPPPVQSPPPPSPPPP 629
               PP  +         
Sbjct: 95  APAAPPAAAAAAAPAAAA 112

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.3 bits (141), Expect = 8e-09
 Identities = 28/112 (25%), Positives = 37/112 (33%), Gaps = 24/112 (21%)

Query: 392 PAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPL 451
           PAP P  P+  +P    PTP                   P   ++       P +E    
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAP--------------STRPKAAAAANIPPKEPVRETAT- 408

Query: 452 VQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPP 503
              PPP  P PV+ P P     P S      +  P    P+ +PP    PP 
Sbjct: 409 ---PPPVPPRPVAPPVP---HTPESAPKLTRAAIPVDEKPKYTPPA---PPK 451

Length = 585

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 35/141 (24%), Positives = 43/141 (30%), Gaps = 9/141 (6%)

Query: 372 TPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEP 431
            P+   P       A    T +          P  ASP+ P      VP    PP     
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 432 PKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTP 491
           P  SS  P     + + PP     P +  PP   P P    PP      P    P  ST 
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPP---PGPAAPPPP------PVQQVPPLSTA 257

Query: 492 QPSPPPVSYPPPVRSPPPPSP 512
           +P+PP  S  P          
Sbjct: 258 KPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 30/142 (21%), Positives = 43/142 (30%), Gaps = 27/142 (19%)

Query: 393 APAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLV 452
                     +    +  P                      P++  P        P P  
Sbjct: 392 GAPAAAAPSAAAAAPAAAPA---------------------PAAAAPAAAAA---PAPAA 427

Query: 453 QSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP-PPPS 511
              P  +P P   PP      P    PSP  PP A  + QP+P P + P P  +P P P 
Sbjct: 428 APQPAPAPAPAPAPPSPAGNAPAGGAPSP--PPAAAPSAQPAPAPAAAPEPTAAPAPAPP 485

Query: 512 PMPSPSSPPPVYSPPPPSPPPV 533
             P+P++ P   + P       
Sbjct: 486 AAPAPAAAPAAPAAPAAPAGAD 507

Length = 824

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 58.2 bits (140), Expect = 1e-08
 Identities = 45/182 (24%), Positives = 62/182 (34%), Gaps = 17/182 (9%)

Query: 465 YPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPS--------PMPSP 516
           Y P +  AP   P+   ++   A  +      PV+  PPV S   P         P+P P
Sbjct: 307 YDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGP 366

Query: 517 SSPPPVYSPPPPSPPPVS--YPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS 574
            +  PV +P P   P  S    P V+ + P    + P  P  +P    P    Y  P   
Sbjct: 367 QTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPE 426

Query: 575 PPPSSPTPSPSPSPPP---PIQSPPPTSP--PPPVGSPPPPIQSP--PPPVQSPPPPSPP 627
            P   P  +P+P  P      Q+    S   P          Q P    P+   P P   
Sbjct: 427 QPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQ 486

Query: 628 PP 629
            P
Sbjct: 487 QP 488

Length = 1355

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 390 KTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPP 449
           + P P PP          + T     +             +PP  S   P+   P ++P 
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 450 PLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPP 509
               S  P        P   +S  PP    SP++P P      P PPPV   PP+ S   
Sbjct: 206 SPSDSSLP------PAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPL-STAK 258

Query: 510 PSPMPSPSSPPPVYSPPP 527
           P+P  + ++P P+     
Sbjct: 259 PTPPSASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 31/113 (27%), Positives = 39/113 (34%), Gaps = 7/113 (6%)

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP 544
              +   Q   P  + P    + P PS   + S  P   S       P S   P  +  P
Sbjct: 370 SGGRGPKQHIKPVFTQPA---AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGT--P 424

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPPP--VRSPPPSSPTPSPSPSPPPPIQSP 595
           PT S+ PP  V   PP + P  + P         P S   S  PS   PIQ  
Sbjct: 425 PTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEK 477

Length = 614

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.4 bits (137), Expect = 3e-08
 Identities = 27/200 (13%), Positives = 45/200 (22%), Gaps = 34/200 (17%)

Query: 373 PSAPTP--------------KPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNR 418
           P AP                 P+   P        P        S   A+  P       
Sbjct: 340 PLAPDRRMGVEMTLLRMLAFHPAAPLPE----PEVPPQSAAPAASAQ-ATAAP------- 387

Query: 419 VPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPM 478
                   +         P P + P +    PL ++                +       
Sbjct: 388 -----TAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE 442

Query: 479 PSPSSPP-PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPP 537
           P+ +S   P  S  +        P  +   P         +  PV     P   P +   
Sbjct: 443 PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKK 502

Query: 538 PVRSSPPPTPSLSPPPPVQS 557
            +      TP L+     ++
Sbjct: 503 AL--EHEKTPELAAKLAAEA 520

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 56.8 bits (138), Expect = 3e-08
 Identities = 13/84 (15%), Positives = 28/84 (33%)

Query: 453 QSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSP 512
             P  ++ P  +      +A  P+  P+  +P      P  +  P + P P  +    + 
Sbjct: 36  YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA 95

Query: 513 MPSPSSPPPVYSPPPPSPPPVSYP 536
             +P +     +P   +      P
Sbjct: 96  PAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 38/129 (29%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 417 NRVPRHKVPPIIVEPPKPSSPTPTTMPP--KQEPPPLVQSPPPSSPPPVSYPPPVRSAPP 474
           +RV          E  +PS P     PP    +P   VQ PP +  PP   P P + AP 
Sbjct: 69  HRVNHAPANAQEHEAARPS-PQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQ 127

Query: 475 PSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP---PPPSPP 531
           P   P    P P Q   QP  P V+  P      P     +     PV +P   P   P 
Sbjct: 128 PVQQP-AYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPA 186

Query: 532 PVSYPPPVR 540
           PV   P  +
Sbjct: 187 PVMDKPKRK 195

Length = 333

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.1 bits (136), Expect = 4e-08
 Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 555 VQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSP 614
            QS    +      PPP +  PP      P P P      P P  PPP          + 
Sbjct: 512 SQSGSASNTAKT--PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQ 569

Query: 615 PPPVQSPPPPSPPPP 629
            P   SPPPP P  P
Sbjct: 570 IPADSSPPPPIPEEP 584

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 31/112 (27%), Positives = 37/112 (33%), Gaps = 6/112 (5%)

Query: 441 TMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSY 500
                + P    Q   P    P + P P  +A   SP PS SS     S PQ +  P   
Sbjct: 368 DASGGRGPK---QHIKPVFTQPAAAPQP-SAAAAASPSPSQSSAAAQPSAPQSATQPAGT 423

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPP 552
           PP V   PP +   +P S  P    P           PV       PS   P
Sbjct: 424 PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEE--KKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 12/110 (10%), Positives = 24/110 (21%), Gaps = 3/110 (2%)

Query: 486 PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPP 545
           P  +    +  P     P     P +P   P   P +                 R++ P 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEP--APWLVEHAKRLTAQRE-QLVARAAAPA 109

Query: 546 TPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
            P    P                     + P        + +    +++ 
Sbjct: 110 APEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 7/114 (6%)

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
           PP   +P    P   P +  P     P +P     P  V  +   T          + P 
Sbjct: 53  PPAAAAPAAAQP---PPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPA 109

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSP 614
                     P      ++   +          +P P  P     +    +++ 
Sbjct: 110 APEA----QAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 2/106 (1%)

Query: 524 SPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPS 583
           +PP  + P  + PPP   + P   S    P  +  P                   +  P+
Sbjct: 52  APPAAAAPAAAQPPPA--AAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPA 109

Query: 584 PSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
              +  P   +    +             +P P V +    +    
Sbjct: 110 APEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.4 bits (134), Expect = 7e-08
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP---PPPIQSPP 596
           R       + +P     S    +P     P        ++P P+ +P P   P P  +PP
Sbjct: 383 RRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPP 442

Query: 597 PTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
             +   P G  P P  +  P  Q  P P+  P 
Sbjct: 443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPE 475

Length = 824

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 54.4 bits (131), Expect = 7e-08
 Identities = 26/141 (18%), Positives = 34/141 (24%), Gaps = 13/141 (9%)

Query: 479 PSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPM------PSPSSPPPVYSPPPPSPPP 532
           PSP +PPP    PQP P P         P               ++PP  ++ P     P
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGP 110

Query: 533 VSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPP----VRSPPPSSPTPSPSPSP 588
                P +  P   P +           P   P           R   P+S         
Sbjct: 111 TIQTEPGQLYPVQVPVMV---TQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQS 167

Query: 589 PPPIQSPPPTSPPPPVGSPPP 609
                       P     P  
Sbjct: 168 AQKNDESQLQQQPNGETPPQQ 188

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 55.7 bits (135), Expect = 7e-08
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 523 YSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTP 582
           Y P   + P         ++    P+ +P     + P P+PP         + P + P P
Sbjct: 36  YGPGSTAAPTA--AAAAAAAAASAPAAAPAAKAPAAPAPAPPA-------AAAPAAPPKP 86

Query: 583 SPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPP 615
           + + +      +PP  +      +     +  P
Sbjct: 87  AAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 37/128 (28%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 428 IVEPPKPSSPTPTTM--PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
           ++E P P+ P   TM  P   EPP  VQ PP     P   P P+   P  +P+  P   P
Sbjct: 38  VIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEP 97

Query: 486 PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPP 545
             +  P+P P PV               P P+SP        P+ P  S      S P  
Sbjct: 98  KPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFE---NTAPARPTSSTATAAASKPVT 154

Query: 546 TPSLSPPP 553
           + S  P  
Sbjct: 155 SVSSGPRA 162

Length = 246

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 30/103 (29%), Positives = 36/103 (34%), Gaps = 4/103 (3%)

Query: 525 PPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP 584
           P        + P P     PP  S  P  PVQ PP    PP         P   +P P  
Sbjct: 75  PANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPP----QHAPRPAQPAPQPVQ 130

Query: 585 SPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
            P+  P  + P      P V   P P+ S P P Q    P+ P
Sbjct: 131 QPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEP 173

Length = 333

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 55.2 bits (133), Expect = 8e-08
 Identities = 24/118 (20%), Positives = 32/118 (27%), Gaps = 1/118 (0%)

Query: 446 QEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVR 505
             P      P P          P    P P  MP+ ++ P   +   P  P   +    R
Sbjct: 635 FPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAAL-R 693

Query: 506 SPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP 563
           +P  P P   P     +  PP         P        PT    P PP       + 
Sbjct: 694 APQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 55.3 bits (133), Expect = 8e-08
 Identities = 44/270 (16%), Positives = 62/270 (22%), Gaps = 16/270 (5%)

Query: 371 STPSAPTPK-PSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIV 429
           S       + P   T        A    T   P                    K P + V
Sbjct: 374 SPSPNSGKEMPGILTTENLDLPLASTDSTEMDPEDKRGGAVKINNSGILAWGLKTPGLAV 433

Query: 430 EP----PKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPS---PMPSPS 482
                    S      + P   P PL           VS P   R + P S       P 
Sbjct: 434 NDERSIAVSSDGITDVLDP---PSPLRLHSSDKVIDSVSPPSKRRVSAPASRLDDAKRPE 490

Query: 483 SPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSS 542
                +S+   S    S      S    S +      P          PP   PP  R +
Sbjct: 491 VTATPESSGSDSEGGASGREDETSSDAESVVSIKELRPR--IGFINKSPPPKSPPKSRRT 548

Query: 543 PPPTPSLSPP--PPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQ-SPPPTS 599
                SL+ P       P P     V+   P         T +            P  ++
Sbjct: 549 LIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSA 608

Query: 600 PPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
              P+  P   ++      ++P        
Sbjct: 609 SSKPLTGPGSDLKPATLNGKTPSSSLVGAA 638

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 8e-08
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 253 NLTVFDIRSNKFHGSVPQ-SFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           NL   D+ +N+    +P  +F  L N+  LD+S N LT         LP L +   S N
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 55.2 bits (133), Expect = 9e-08
 Identities = 34/157 (21%), Positives = 41/157 (26%), Gaps = 21/157 (13%)

Query: 363 CSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRH 422
                 PP  P  P   P    P Q    P+ AP  P LP                    
Sbjct: 194 QGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQL----------------- 236

Query: 423 KVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPS 482
             P       +P  P  +   P   P P  Q   P  P P + PPP     P   +P   
Sbjct: 237 --PQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQP--PQPQAQPPPQNQPTPHPGLPQGQ 292

Query: 483 SPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSP 519
           + P          P V  P   +  P         S 
Sbjct: 293 NAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQ 329

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 54.7 bits (131), Expect = 1e-07
 Identities = 44/162 (27%), Positives = 54/162 (33%), Gaps = 3/162 (1%)

Query: 470 RSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPS 529
           RS+ P  P P  +      S  Q    P   PP ++ PP  +  PS   P P     PP 
Sbjct: 148 RSSSPSIPSPQDNESDSDSSAQQQLLQP-QGPPSIQVPPGAALAPSAPPPTPSAQAVPPQ 206

Query: 530 PPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPP 589
             P++  P  +   P   SL   P +     PSP P L P       P  P PS      
Sbjct: 207 GSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQS 266

Query: 590 PPIQSPPPTSPPPPVGSP--PPPIQSPPPPVQSPPPPSPPPP 629
                 PP       G      P  +PP P        PP P
Sbjct: 267 SHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLP 308

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 54.5 bits (132), Expect = 1e-07
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 3/88 (3%)

Query: 534 SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQ 593
            Y P   ++P    + +          P+      P      PP++  P+  P P     
Sbjct: 35  DYGPGSTAAPTAAAAAAAAAASAPAAAPAAKA---PAAPAPAPPAAAAPAAPPKPAAAAA 91

Query: 594 SPPPTSPPPPVGSPPPPIQSPPPPVQSP 621
           +    + PP   +   P  +      +P
Sbjct: 92  AAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 54.7 bits (131), Expect = 1e-07
 Identities = 53/255 (20%), Positives = 69/255 (27%), Gaps = 19/255 (7%)

Query: 367 GSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
           G PP  P     +      ++E   P             V     P  E      HK   
Sbjct: 518 GLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKE------HKPSK 571

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPP 486
           I     KP  P     P   E P            P S   P R  P    +P     P 
Sbjct: 572 IPTLSKKPEFPKDPKHPKDPEEPK-------KPKRPRSAQRPTR--PKSPKLPELLDIPK 622

Query: 487 AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
           +   P+    P   PPP R    PS    P  P  + SP PP  P   + P  +      
Sbjct: 623 SPKRPESPKSPKRPPPPQR----PSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDD 678

Query: 547 PSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
              +     ++                + P +  TP  +P P PP        P  P+G 
Sbjct: 679 YLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGD 738

Query: 607 PPPPIQSPPPPVQSP 621
           P             P
Sbjct: 739 PDAEQPDDIEFFTPP 753

Length = 943

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP 607
           S S     ++PPPP   P   PPP  +PP   PT   +P P PP   P  T       + 
Sbjct: 514 SGSASNTAKTPPPPQKSP---PPPAPTPPLPQPTA-TAPPPTPPPPPPTATQASSNAPAQ 569

Query: 608 PPPIQSPPPPVQSPPPPSPPPP 629
            P   SPPPP+   P PSP   
Sbjct: 570 IPADSSPPPPIPEEPTPSPTKD 591

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 474 PPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPV 533
             +   + + PPP +S P P+P P    P   +PPP  P P P++     + P   P   
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 534 SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
           S PPP            P  P  SP   S P
Sbjct: 575 SPPPP-----------IPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 54.1 bits (131), Expect = 2e-07
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 473 PPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPP 532
           P  +  P+ ++   A +   P+  P +  P   +P PP+     + P P  +    + P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 533 VSYPPPVRSSPPPTPSLSPP 552
              PP   ++  P  +    
Sbjct: 98  A--PPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 25/116 (21%), Positives = 33/116 (28%), Gaps = 1/116 (0%)

Query: 485 PPAQSTPQPSPPPVSY-PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSP 543
           P  +  P  SP   +   PP     P           P  S  P    P     P   +P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAP 439

Query: 544 PPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTS 599
                        +   P   PV+YPP  +S P S   P P  +     Q+     
Sbjct: 440 MNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQ 495

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 53.0 bits (126), Expect = 2e-07
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 506 SPPPPSPMPSPSSPPPVYSPPPPS----PPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPP 561
           +P   +  P+ ++ PP  +   P+     P  +  PP +++ PP  + +PP    +PP  
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280

Query: 562 SPPPVLYPPPVRSPPPSSPT-PSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQS 620
           +  P   P    +PP  +   P+ + + P    + P  +  PP  +  PP ++  PP ++
Sbjct: 281 AAAP---PAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKA 337

Query: 621 PPPPS 625
             PP+
Sbjct: 338 AAPPA 342

Length = 357

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 25/94 (26%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTS 599
               P            +    +     +P     P  +SP+  PS SP  P    PP  
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPED 203

Query: 600 PPPPVGSPPPP----IQSPPPPVQSPPPPSPPPP 629
           P  P  S  PP     QS  PP     P +P PP
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPP 237

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.4 bits (129), Expect = 3e-07
 Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 509 PPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLY 568
             +   + + PPP  SPPPP+P P   P P  ++PPPTP   PPPP  +    S  P   
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTP-PLPQPTATAPPPTP---PPPPPTATQASSNAPAQI 570

Query: 569 PPPVRSPPPSSPTPSPSPSPPPP 591
           P     PPP    P+PSP+    
Sbjct: 571 PADSSPPPPIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.7 bits (130), Expect = 3e-07
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 7/103 (6%)

Query: 481 PSSPPPA-------QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPV 533
           P+S  P+             + P  +      +   P+  P+  +P      PP +  P 
Sbjct: 22  PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA 81

Query: 534 SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPP 576
           + P P  ++       +PP    +  P +        P+R   
Sbjct: 82  APPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.7 bits (130), Expect = 3e-07
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 505 RSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
                 +P  + ++     S P  +P   +   P  + P      +PP P  +    + P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 565 PVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
                    +PP ++   +P+ +      +P
Sbjct: 97  A--------APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.7 bits (130), Expect = 3e-07
 Identities = 12/83 (14%), Positives = 27/83 (32%)

Query: 518 SPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPP 577
            P    +P   +    +      ++P      +P P   +   P+ PP        +  P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 578 SSPTPSPSPSPPPPIQSPPPTSP 600
           ++P  + + + P         +P
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 3e-07
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 496 PPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPV 555
           P  +  P   +    +   +P++ P   +P  P+P P   P     + PP P+ +     
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAP---PAAAAPAAPPKPAAAAAAAA 94

Query: 556 QSPPPPSPPPVLYPPPVRSPPPSSP 580
               PP+      P         +P
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 3e-07
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 4/83 (4%)

Query: 542 SPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
            P  T + +      +    +P          +P P+ P  +   +PP P  +    + P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 602 PPVGSPPPPIQSPPPPVQSPPPP 624
                 PP   +   P  +    
Sbjct: 97  A----APPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 3e-07
 Identities = 15/87 (17%), Positives = 29/87 (33%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
           P   ++PT               +P   +P   +  PP  +AP   P P+ ++   A   
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 491 PQPSPPPVSYPPPVRSPPPPSPMPSPS 517
             P+    + P         +P+   +
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 38/167 (22%), Positives = 54/167 (32%), Gaps = 13/167 (7%)

Query: 471 SAPPPSPMPSPSSPPPAQSTPQP-SPPPVSYPPPVRSPPPPSPMPSPSSP--------PP 521
            + P S + +PSS P +     P    P S     R   P S      +         P 
Sbjct: 387 YSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKPT 446

Query: 522 VYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPT 581
           + S P   P  +S      +SP  +  L  PPP            L   P  +    + +
Sbjct: 447 LASIPDEKPSNISVFEDSETSPNSSTLLRDPPP---KKCGEESGHLPNNPFFNKLKLTLS 503

Query: 582 PSPSPSP-PPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
             P  SP    I  P P+ P   + S    + S    + SPPP    
Sbjct: 504 SIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTL 550

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 30/111 (27%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 508 PPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVL 567
           P P     P   P   +   P+ PP      VR+     PSL P       PP +P    
Sbjct: 45  PKPGDRDEPDMMPAA-TQALPTQPPEGAAEAVRAGDAAAPSLDPA---TVAPPNTPVEP- 99

Query: 568 YPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPV 618
             P    PP   P   P P P P  +   P +P P    P P ++    P 
Sbjct: 100 -EPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPE---PKPVVEEKAAPT 146

Length = 226

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 423 KVPPIIVEPPKPSSPTPT--TMPPKQEPPPLVQSPPPSSPP-PVSYPPPVRSAPPPSPMP 479
            VP      P  ++P+P   T  P   P     +  P   P   +  PP     P +P  
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSP 512
             +     + T    P       P  +PP P  
Sbjct: 422 PHTPESAPKLTRAAIPVDEK---PKYTPPAPPK 451

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS 574
           S S+     +PPPP   P   PPP  + P P P+ + PPP    PPP PP          
Sbjct: 514 SGSASNTAKTPPPPQKSP---PPPAPTPPLPQPTATAPPP---TPPPPPPTATQASSNAP 567

Query: 575 PPPSSPTPSPSPSPPPPIQSPPPTSPP 601
               + +  P P P  P  SP   S P
Sbjct: 568 AQIPADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 1/109 (0%)

Query: 518 SPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPP 577
           +PP   +P    PPP + P  V     P      P  V+     +           +P  
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAE-PAPWLVEHAKRLTAQREQLVARAAAPAA 110

Query: 578 SSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
                  +P+     ++           +P P + +      +    + 
Sbjct: 111 PEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 27/111 (24%), Positives = 36/111 (32%), Gaps = 3/111 (2%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
             K + P P      +   P V  P P   P  +  P   +   P    +  +   A   
Sbjct: 638 VFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQA 697

Query: 491 PQPSPPP---VSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPP 538
           P+P  PP      PPP   P    P P  SS     + PP   PP +    
Sbjct: 698 PRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQAD 748

Length = 753

>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 58/258 (22%), Positives = 74/258 (28%), Gaps = 18/258 (6%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNR-------VP 420
           SP   P A  P P+ ST  +  +  A   PTPSL  P   + T P+ +  R       +P
Sbjct: 137 SPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDGFQLP 196

Query: 421 RHKVPPIIVEPPKPSSPTPTTM-PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP 479
             K P     P   S P P               S  PS       PPPV    P    P
Sbjct: 197 APKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAPDDSTP 256

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSP-------SSPPPVYSPPPPSPPP 532
              S       P   P  +  P P       S    P                   +   
Sbjct: 257 LDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSVDQSATPLDQGFSNFGS 316

Query: 533 VSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP--PP 590
             Y  P+  +   +     P         +  P      V     S+    PSPSP    
Sbjct: 317 NMYSEPLNPTND-SLLYGLPSSSSLYANRTIFPAWASTSVSPLDFSTLFNQPSPSPMASQ 375

Query: 591 PIQSPPPTSPPPPVGSPP 608
            I +P   + P PV  P 
Sbjct: 376 SILAPAQPTSPSPVALPS 393

Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 52.9 bits (127), Expect = 5e-07
 Identities = 32/185 (17%), Positives = 46/185 (24%), Gaps = 15/185 (8%)

Query: 438 TPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPP 497
                 P++           ++            A   +   +       +S        
Sbjct: 774 LLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKR----KSRSHTPDGG 829

Query: 498 VSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQS 557
                P R P   +  P   S     S P  +          R   PP P   P     +
Sbjct: 830 SESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAA--A 887

Query: 558 PPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPP 617
           PP  +            PP  +P P P P+P   +   PP  P P  G    P      P
Sbjct: 888 PPKAAAAA---------PPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTP 938

Query: 618 VQSPP 622
             S  
Sbjct: 939 APSAA 943

Length = 1352

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 5e-07
 Identities = 17/79 (21%), Positives = 23/79 (29%)

Query: 549 LSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPP 608
           L      +     +P      P    PP      +P         SPPP    PP+  P 
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 609 PPIQSPPPPVQSPPPPSPP 627
            P +  P P  +     P 
Sbjct: 420 EPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 5e-07
 Identities = 15/82 (18%), Positives = 26/82 (31%)

Query: 462 PVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPP 521
           P S   P  +A   +   S  +  PA   P    P         +PP P+   + ++ P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 522 VYSPPPPSPPPVSYPPPVRSSP 543
                  +  P +       +P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 27/126 (21%), Positives = 33/126 (26%), Gaps = 7/126 (5%)

Query: 494 SPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPP 553
            PP      P            P  P PV    P   P  +  P   +   P     P  
Sbjct: 635 FPPVFKTALPRPDYNRGGEAGGPGVPGPV----PVGMPAHTARPSRVARGDPVR---PTA 687

Query: 554 PVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQS 613
              +   P  P    PP      P  P    +  P P   S   +   PP   PP   Q+
Sbjct: 688 HHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQA 747

Query: 614 PPPPVQ 619
                Q
Sbjct: 748 DGAENQ 753

Length = 753

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 52.6 bits (126), Expect = 5e-07
 Identities = 36/198 (18%), Positives = 45/198 (22%), Gaps = 18/198 (9%)

Query: 422 HKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSP 481
                I V     S+P  +   P   P   V   PP S P  S     R   P S     
Sbjct: 375 QIRDSISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPG-SNVSSRRVGTPGSKSDRV 433

Query: 482 SSPPPAQSTPQP---SPPPVSYPPPVRSPPP---PSPMPSPSSPPPVYSPPPPSPPPVSY 535
            +    +   +P   S P                P+       PPP              
Sbjct: 434 GAVLLRRMNIKPTLASIPDEKPSNISVFEDSETSPNSSTLLRDPPP---KKCGEESGHLP 490

Query: 536 PPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
             P  +    T S  PP   +      P P        S P S  +              
Sbjct: 491 NNPFFNKLKLTLSSIPPLSPRQSIITLPTP--------SRPASRISSLSLRLGSYSGSIV 542

Query: 596 PPTSPPPPVGSPPPPIQS 613
            P   P  V        S
Sbjct: 543 SPPPYPTLVSRKGAAGLS 560

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 25/170 (14%), Positives = 32/170 (18%), Gaps = 6/170 (3%)

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPS---PMPSPSSPPPAQSTPQPSPPPVSY 500
             + P         +       P    S         +  P            +   V  
Sbjct: 17  SDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPR 76

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
           PP         P   P+S      PP P+P P        S      S SP    Q   P
Sbjct: 77  PPRGPEQTLDKPDSLPASRE---LPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFP 133

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPP 610
               P+                S  P              P         
Sbjct: 134 VILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTH 183

Length = 580

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 40/195 (20%), Positives = 53/195 (27%), Gaps = 18/195 (9%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPP-------TPSLPSPPVASPTPPTWEWNRVP 420
           +PP   +  T +P    P + P      P         P     P A P  P ++    P
Sbjct: 96  APPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEP 155

Query: 421 RHKVPPIIVEPPK--PSSPTPTT--MPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPS 476
                       +       P      P    P   +   P       Y    R    P 
Sbjct: 156 GAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPR 215

Query: 477 PMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYP 536
           P       P    T +P PPP +       P PP       +P     P  P P   + P
Sbjct: 216 P---DWDRPRRDRTDRPEPPPGAGHVHRGGPGPPER---DDAPVVPIRPSAPGPLA-AQP 268

Query: 537 PPVRSSPPPTPSLSP 551
            P      PT  L+P
Sbjct: 269 APAPGPGEPTARLNP 283

Length = 617

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.3 bits (126), Expect = 6e-07
 Identities = 20/80 (25%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 524 SPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPS 583
           S    +  P           P  P   P      P PP PPP        +P       S
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 584 PSPSPPPPIQSPPPTSPPPP 603
           P P  P    +P PT    P
Sbjct: 576 PPPPIPEE-PTPSPTKDSSP 594

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 6e-07
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 449 PPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPP 508
           P    +P  ++    +      +AP      +P+  PPA + P   P P        +  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPA--AAAAAAAA 95

Query: 509 PPSPMPSPSSPPPVYSPPPP 528
           P +P  + ++  P  +    
Sbjct: 96  PAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 7e-07
 Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 15/103 (14%)

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
             P +   P  T   P   P P   +    SP   S                PS+P  A 
Sbjct: 373 RGPKQHIKPVFTQ--PAAAPQPSAAAAASPSPSQSSAAAQ------------PSAPQSA- 417

Query: 489 STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPP 531
           + P  +PP VS  PP   P  P      +  P  +      P 
Sbjct: 418 TQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460

Length = 614

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 51.9 bits (125), Expect = 7e-07
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 3/110 (2%)

Query: 449 PPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPP 508
           PP   +P  + PPP + P  V     P+  P+P     A+         V+      +P 
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARA---AAPA 109

Query: 509 PPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSP 558
            P      +      +         +     R   P   + +    V++ 
Sbjct: 110 APEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKAR 159

Length = 484

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 38/192 (19%), Positives = 57/192 (29%), Gaps = 7/192 (3%)

Query: 442 MPPKQEPPPLVQSPPPSSPPPVSYP--PPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVS 499
           M P  + P  V     +    V       ++     +      +    Q      P    
Sbjct: 311 MGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQ 370

Query: 500 YPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPP 559
                +       +               + P     P + SSP P P +     +  PP
Sbjct: 371 QQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPP 430

Query: 560 PPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPP--TSPPPPVGSPPPPIQSPPPP 617
            PS P    P    S PP S +    PSPP  + SP P  +  P    +    + SP  P
Sbjct: 431 QPSVP---SPGGPGSQPPQSVSGGMIPSPPALMPSPSPQMSQSPASQRTIQQDMVSPGGP 487

Query: 618 VQSPPPPSPPPP 629
           + +P   S   P
Sbjct: 488 LNTPGQSSVNSP 499

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.8 bits (125), Expect = 8e-07
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 13/91 (14%)

Query: 536 PPP------VRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPP 589
           P P      ++  PP        PP     P +P          + P ++     +  P 
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGGPPGGGGAPGAPAAA-------AAPGAAAAAPAAGGPA 430

Query: 590 PPIQSPPPTSPPPPVGSPPPPIQSPPPPVQS 620
             + + P  +        P     P   + S
Sbjct: 431 AALAAVPDAAAAAAAPPAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.7 bits (124), Expect = 8e-07
 Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 526 PPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPS 585
           P P       P P   + PP  +  P PP     P +  P   P P      + P  S  
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPA--PAPAPPAAAAPPARSAD 439

Query: 586 PSPPP 590
           P+   
Sbjct: 440 PAAAA 444

Length = 576

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 370 PSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIV 429
             T +AP+P   T  P+  PK  A A   P  P    A+P P        PR   PP+  
Sbjct: 370 KPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP------PRPVAPPV-P 422

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSS 459
             P+ +        P  E P      PP  
Sbjct: 423 HTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.5 bits (124), Expect = 9e-07
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
             +      PPP + SPPP    +P PP+  P   +PPP   PPP  +   SS  P+  P
Sbjct: 515 GSASNTAKTPPPPQKSPPP---PAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 587 SPPPPIQSPPPTSPPPPVGSPPP 609
           +   P    P    P P     P
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.5 bits (124), Expect = 9e-07
 Identities = 26/75 (34%), Positives = 29/75 (38%)

Query: 507 PPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV 566
                P P  S PPP  +PP P P   + PP     PP     S   P Q P   SPPP 
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579

Query: 567 LYPPPVRSPPPSSPT 581
           +   P  SP   S  
Sbjct: 580 IPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 24/136 (17%), Positives = 27/136 (19%), Gaps = 5/136 (3%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
            PP  +        S     P                P     PP P P P       S 
Sbjct: 55  YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASS 114

Query: 526 PPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPS 585
           P       S  P           L+P   +      S          R PP  S      
Sbjct: 115 PRLGAD--STSPRFLYQVNFPVILAP---IGESNSSSEELSEEEEHSRPPPSESLKVKNG 169

Query: 586 PSPPPPIQSPPPTSPP 601
               P   S   T   
Sbjct: 170 GKVYPKGFSKHKTHKR 185

Length = 580

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.0 bits (123), Expect = 1e-06
 Identities = 16/140 (11%), Positives = 29/140 (20%), Gaps = 8/140 (5%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
             +  +        P  +     P   AP            +       +  R       
Sbjct: 379 ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGA-TK 437

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
               EP   S   P     ++              P        ++  P      P + P
Sbjct: 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATP 497

Query: 486 PA-------QSTPQPSPPPV 498
            A       + TP+ +    
Sbjct: 498 KALKKALEHEKTPELAAKLA 517

Length = 647

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.5 bits (124), Expect = 1e-06
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 441 TMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSY 500
           +     + PP  Q  PP   P    P P  +APPP+P P P       S+  P+  P   
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTP-PPPPPTATQASSNAPAQIPADS 574

Query: 501 PPPVRSPPPPSPMPSPSSPPPVY 523
            PP   P  P+P P+  S P   
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPEEI 597

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 2/76 (2%)

Query: 516 PSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP 575
             S     S P    P  +  PP     P  P         SPPP    P +  P    P
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE--P 421

Query: 576 PPSSPTPSPSPSPPPP 591
              SPTP  + +  PP
Sbjct: 422 TEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 27/83 (32%), Positives = 38/83 (45%)

Query: 435 SSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPS 494
            S + +     + PPP  +SPPP +P P    P   + PP  P P P++   + + P   
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570

Query: 495 PPPVSYPPPVRSPPPPSPMPSPS 517
           P   S PPP+   P PSP    S
Sbjct: 571 PADSSPPPPIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.4 bits (124), Expect = 1e-06
 Identities = 14/82 (17%), Positives = 28/82 (34%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
           P    +    +   + ++  PA +    +P   +  PP  + P   P P+ ++       
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 526 PPPSPPPVSYPPPVRSSPPPTP 547
            PP+    + P         TP
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 542 SPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
           S    P     P    P           P   +    SP+ S + + P   QS    +  
Sbjct: 370 SGGRGPKQHIKPVFTQPAAA------PQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGT 423

Query: 602 PPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           PP  S  PP   P  P  + P    P  
Sbjct: 424 PPTVSVDPPAAVPVNPPSTAPQAVRPAQ 451

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS 574
           S    P  +  P  + P  +  P   ++  P+PS S      S P  +  P   PP V  
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429

Query: 575 PPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSP 621
            PP +  P   PS  P    P        +  P   + S  P    P
Sbjct: 430 DPP-AAVPVNPPSTAPQAVRPAQFKEEKKI--PVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 10/112 (8%)

Query: 452 VQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPS 511
           +  P  ++P          + PPP+  P+  S P A    +P+P  V +   + +     
Sbjct: 51  LAPPAAAAPAA--------AQPPPAAAPAAVSRPAAP-AAEPAPWLVEHAKRLTAQREQL 101

Query: 512 PMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP 563
              + +   P    P       +     R       +  P P V +    + 
Sbjct: 102 VARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAA-PRPRVPADAAAAV 152

Length = 484

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 33/131 (25%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

Query: 468 PVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPP 527
            +   PP      P   P      +   P V  P PV  P   +     +   PV     
Sbjct: 631 IISGFPPVFKTALPR--PDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPV----- 683

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPS 587
               P ++   +R+   P P   P      PPPP  P    P P  S   +SPT  P P 
Sbjct: 684 ---RPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPE 740

Query: 588 PPPPIQSPPPT 598
           PP   Q+    
Sbjct: 741 PPGAEQADGAE 751

Length = 753

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 47/308 (15%), Positives = 70/308 (22%), Gaps = 35/308 (11%)

Query: 351 VVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVAS-- 408
            +  P     DE S   S         P       + +    + +PP+    S P +   
Sbjct: 425 GLKTPGLAVNDERSIAVSSDGITDVLDPPSPLRLHSSDKVIDSVSPPSKRRVSAPASRLD 484

Query: 409 --PTPPTWEWNRVPRHKVPPIIVEPPKPSS-----------PTPTTMPPKQEPPPLVQSP 455
               P                       +S             P      + PPP  +SP
Sbjct: 485 DAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSPPP--KSP 542

Query: 456 PPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPS 515
           P S    +        +   SP P PS       T   +                    S
Sbjct: 543 PKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGV--GS 600

Query: 516 PSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPP-VQSPPPPSPPPVLYPPPVRS 574
              P    S  P + P     P   +   P+ SL        +      P  L       
Sbjct: 601 SVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGFTSPI 660

Query: 575 PPP-SSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQS--------------PPPPVQ 619
               S+     + +   P++   P              +S                 PV 
Sbjct: 661 SLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTESASTTDVFQNFAGLNKKTPVG 720

Query: 620 SPPPPSPP 627
            P  P PP
Sbjct: 721 GPFQPKPP 728

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 51.6 bits (123), Expect = 1e-06
 Identities = 59/280 (21%), Positives = 82/280 (29%), Gaps = 32/280 (11%)

Query: 361 DECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVP 420
           DE   GG P  T      K     PA+E K P+  P     P  P     P   E  + P
Sbjct: 541 DEPKEGGKPGETKEGEVGK--KPGPAKEHK-PSKIPTLSKKPEFPKDPKHPKDPEEPKKP 597

Query: 421 RHKVPPII-VEPPKPSSPTPTTMPPKQEPPPLVQSP--PPSSPPPVSYPPPVRSAPPPSP 477
           +          P  P  P    +P   + P   +SP  PP    P S   P       SP
Sbjct: 598 KRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSP 657

Query: 478 MPSPSSPPP-------------------AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSS 518
            P  S  PP                   ++ T        S+   ++   P +P    ++
Sbjct: 658 KPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTT 717

Query: 519 PPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPP------VQSPPPPSPPPVLYPPPV 572
           P P+    P        P     +  P       PP          P  +P P +     
Sbjct: 718 PRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEF 777

Query: 573 RSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQ 612
           +     + T  P  +   P  SP      PP   P  P +
Sbjct: 778 KEEDIHAETGEPDEAMKRP-DSPSEHEDKPPGDHPSLPKK 816

Length = 943

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 47/216 (21%), Positives = 68/216 (31%), Gaps = 29/216 (13%)

Query: 381 STSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPT 440
           + S        PAPAP  P+ P+ PV +P   +   N   R +V          +     
Sbjct: 58  ARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVA-------SAAEDMIA 110

Query: 441 TMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSY 500
            M  +Q         P S P       PVR+A  PSP     +   A  T       +S 
Sbjct: 111 AMALRQ---------PVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSA 161

Query: 501 PPP--VRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSS---------PPPTPSL 549
            P          +P+P      PV + P P P   +      +                 
Sbjct: 162 VPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLD 221

Query: 550 SPPPPVQSPPPPSPPPVLYPP-PVRSPPPSSPTPSP 584
              P +  PP   PP V+ P  P      ++  P+P
Sbjct: 222 DALPQI-LPPAALPPIVVAPAAPAALAAVAAAAPAP 256

Length = 559

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 34/169 (20%), Positives = 41/169 (24%), Gaps = 11/169 (6%)

Query: 470 RSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP--------PPPSPMPSPSSPPP 521
           R AP  S   S     P +      P      PP            P P   P      P
Sbjct: 65  RLAPIISETLSRELGRPIRIAITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGP 124

Query: 522 VYSPPPPSPPPVSYPPPVRSSPP---PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPS 578
                PP  P     P  R + P     P     P            + +PP      P+
Sbjct: 125 RADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPA 184

Query: 579 SPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
           S  P       P     P           P P    P   ++  P  PP
Sbjct: 185 SYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPP 233

Length = 617

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.7 bits (122), Expect = 2e-06
 Identities = 24/79 (30%), Positives = 29/79 (36%)

Query: 487 AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
           +QS    +      PP    PPP    P P        P PP PPP +      +     
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 547 PSLSPPPPVQSPPPPSPPP 565
              SPPPP+   P PSP  
Sbjct: 572 ADSSPPPPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.0 bits (123), Expect = 2e-06
 Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 1/63 (1%)

Query: 568 YPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPP-PVQSPPPPSP 626
           Y P   + P ++   + + +  P           P    P     + PP P  +    + 
Sbjct: 36  YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA 95

Query: 627 PPP 629
           P  
Sbjct: 96  PAA 98

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 19/107 (17%), Positives = 26/107 (24%), Gaps = 12/107 (11%)

Query: 430 EPPKPSSPTPTTMP----PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
           +      P     P    P   P P   +    SP   S      SAP  +  P+ + P 
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ-PSAPQSATQPAGTPPT 426

Query: 486 -------PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
                       P  + P    P   +           S  P    P
Sbjct: 427 VSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 549 LSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPP 608
           + P PP ++P P  P         R     +P P+  P+   P Q P   +P       P
Sbjct: 172 IPPNPPREAPAPGLPKTFTSSHGHRHR--HAPKPTQQPTVQNPAQQPTVQNPAQQPQQQP 229

Query: 609 PPIQSPPPPVQSPPPPSPPPP 629
                 P    +P  P+  PP
Sbjct: 230 QQQPVQPAQQPTPQNPAQQPP 250

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 526 PPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPS 585
               P  +  PPP      P  S S  P   S P    P V + P +  P P+ P+  P+
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA 238

Query: 586 PSPPPPIQ--SPPPTSPPPPVGSPPPPIQ 612
             P PPI         PP P   P  PIQ
Sbjct: 239 SIPAPPIPPVIQYVAPPPVPPPQPIIPIQ 267

Length = 582

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 50/230 (21%), Positives = 66/230 (28%), Gaps = 56/230 (24%)

Query: 369  PPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPII 428
            PPS   A  P      P +    PA +  T S   PP     PP  +    P+ +  P  
Sbjct: 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

Query: 429  VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPP----------PVSYPPPVRSAPPPSP- 477
               P+P  P P    P   P          S            P     P    P P+P 
Sbjct: 2926 PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPS 2985

Query: 478  --MPSPSSPPPAQST--------------PQPSPPPVS-----YPP-------------- 502
               P+ S+PP    +               +  PPPVS     +PP              
Sbjct: 2986 REAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDS 3045

Query: 503  -PVRS---------PPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSS 542
               RS         P P  P      P    +    SP     PPP+ ++
Sbjct: 3046 DSERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPPLSAN 3095

Length = 3151

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 20/92 (21%), Positives = 23/92 (25%), Gaps = 2/92 (2%)

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSPPPV--LYPPPVRSPPPSSPTPSPSPSPPPPIQSPPP 597
           R +  P  +        SP     PP     P      PP +  P      P      P 
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 598 TSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
             P        P  Q   P V   P P    P
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAP 161

Length = 333

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 19/78 (24%), Positives = 27/78 (34%)

Query: 455 PPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMP 514
           P        +   P    P P+P P P+   P+    + +    S PP   SPP P P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 515 SPSSPPPVYSPPPPSPPP 532
                P   +    +PP 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 5/100 (5%)

Query: 467 PPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPP 526
           PP  +AP  +    P +  PA  +   +P     P  V          +        +  
Sbjct: 53  PPAAAAPAAAQ--PPPAAAPAAVSRPAAPAAEPAPWLVEHAKRL---TAQREQLVARAAA 107

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV 566
           P +P   +   P   +     +        + P P  P  
Sbjct: 108 PAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPAD 147

Length = 484

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 1/134 (0%)

Query: 433 KPSSPTPTTMPPKQEPPPLVQSPPPSSPPPV-SYPPPVRSAPPPSPMPSPSSPPPAQSTP 491
           K ++P+         P     +P  ++ PP  +   P ++A  P+   +P +   A    
Sbjct: 207 KAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAK 266

Query: 492 QPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSP 551
             +PP  +  PP ++  PP+   +P +          + P  +   P +++ PP  + +P
Sbjct: 267 AAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAP 326

Query: 552 PPPVQSPPPPSPPP 565
           P    +PP  +  P
Sbjct: 327 PAKAATPPAKAAAP 340

Length = 357

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 507 PPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV 566
           P PP   P+P  P    S         S+    R +P PT   +   P Q P   +P   
Sbjct: 174 PNPPREAPAPGLPKTFTS---------SHGHRHRHAPKPTQQPTVQNPAQQPTVQNPA-- 222

Query: 567 LYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
               P + P      P+  P+P  P Q PP T  
Sbjct: 223 --QQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator)

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 47/214 (21%), Positives = 59/214 (27%), Gaps = 15/214 (7%)

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
             P  P   +P    P    P   +S     P     P    SA P +P  SPSS  P+ 
Sbjct: 218 PHPSLPQPQSPLKPSPSSARPQQSESFSDVWPASTQSPREETSAEPLAPA-SPSSRRPST 276

Query: 489 STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPP---PPSPPPVSYPPPVRSSPPP 545
           +  +          P +      P  S S P    +P    P   PP +     R   P 
Sbjct: 277 AQEEQIACSSPQAEPEQGVQSYVPQSSDSRPSCFPAPSTTQPTFLPPNTNKKAKRDRRPQ 336

Query: 546 TPSLSPP--PPVQSPPPPSPP--PVLYP------PPVRSPPPSSPTPSPSPSPPPPIQSP 595
             +        V           P   P      PP  SP  SS   +PS +   P    
Sbjct: 337 MVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPPSNSPLLSSLADTPSGAAHQPASLL 396

Query: 596 PPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           PP              Q P P     P P     
Sbjct: 397 PPAVVQQQ-LEDASDKQPPTPGSSLVPQPDEQEL 429

This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 37/179 (20%), Positives = 55/179 (30%), Gaps = 11/179 (6%)

Query: 446  QEPPPLVQSPPPSSPPPVSYP-PPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPV---SYP 501
            Q     VQ  P  +  PV+    PV SAP    +      P   + PQP    V   ++P
Sbjct: 858  QREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHP 917

Query: 502  PPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPP-- 559
              + +P    P     S   V         PV  P    +        +     +     
Sbjct: 918  EVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVA 977

Query: 560  -PPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQ----SPPPTSPPPPVGSPPPPIQS 613
             P +P        V +     P  +P+  P   ++    + P T  P P   P  P  S
Sbjct: 978  QPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAPRHS 1036

Length = 1068

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 50.2 bits (120), Expect = 3e-06
 Identities = 29/181 (16%), Positives = 42/181 (23%), Gaps = 8/181 (4%)

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQP-SPPPVSYPP 502
            +++ P + Q    S+P  +   PP    P  +   S   P   +    P        P 
Sbjct: 50  NRKKMPKVFQ--KSSAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPE 107

Query: 503 PVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPP-VRSSPPPTPSLSPPPPVQSPPP- 560
              SP       S              P         +R       S S  PPV      
Sbjct: 108 S--SPSARRLTRSEGVARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGT 165

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQS 620
            S  P                     +      S    S         PP  +P  P+ +
Sbjct: 166 SSKMPATALASAALFKDDEIRQEVDAARSDQ-ASQSRLSRSRGNPPAIPPDAAPRQPMLT 224

Query: 621 P 621
            
Sbjct: 225 R 225

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.9 bits (120), Expect = 4e-06
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 457 PSSPPP------VSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPP 510
           P+S  P        Y P   +AP  +   + ++     + P    P    P P  +   P
Sbjct: 22  PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAP-PAAAAP 80

Query: 511 SPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSP 551
           +  P P++     +   P+ PP +      ++      ++P
Sbjct: 81  AAPPKPAAAAA--AAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 26/121 (21%), Positives = 38/121 (31%), Gaps = 14/121 (11%)

Query: 374 SAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPK 433
           +A  P  + +  A +P  PA AP   S P+ P A P P       V   K      E   
Sbjct: 49  AALAPPAAAAPAAAQPP-PAAAPAAVSRPAAPAAEPAPW-----LVEHAKRLTAQREQLV 102

Query: 434 PSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQP 493
             +  P             Q+P   +    +     R A   +  P P  P  A +    
Sbjct: 103 ARAAAPAAPEA--------QAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVAD 154

Query: 494 S 494
           +
Sbjct: 155 A 155

Length = 484

>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 42/183 (22%), Positives = 51/183 (27%), Gaps = 19/183 (10%)

Query: 461 PPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPS--------- 511
           P  S      +   PSP  SP+       +P  SP  +   P + SP             
Sbjct: 58  PRQSRRSKRAAHAYPSPERSPALSSERLLSP--SPSVLDLSPVLASPQTGKRRRSSSPSD 115

Query: 512 -------PMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQ-SPPPPSP 563
                  P   P S     S  P  PP    P P  S+       S  P    S  PP  
Sbjct: 116 DEDEAERPSKRPRSDSISSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHT 175

Query: 564 PPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPP 623
           P    P   R    S     P+P  P     P   S P P+ +           V S P 
Sbjct: 176 PTDTAPSGKRKRRLSDGFQLPAPKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPS 235

Query: 624 PSP 626
              
Sbjct: 236 LLL 238

Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 2/73 (2%)

Query: 507 PPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV 566
           PP P                P +           ++  P  +L+  P   +     P P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 567 LYPPPVRSPPPSS 579
             P P      +S
Sbjct: 451 AAPQPA--VRLNS 461

Length = 598

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 31/195 (15%), Positives = 52/195 (26%), Gaps = 19/195 (9%)

Query: 376  PTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPS 435
              P+       +E +     P    +P      P         V      P++V  P+P 
Sbjct: 848  VRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPE 907

Query: 436  SPTPT-TMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPS 494
                  T  P+    P+ + P   +   V+    V     P  +         +   + +
Sbjct: 908  EVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPV-VEPQDETADIEEAAETA 966

Query: 495  PPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV--------RSSPP-- 544
               V+ P  V  P  P       +          +  P   P  V         ++ P  
Sbjct: 967  EVVVAEPEVVAQPAAPVV-----AEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMT 1021

Query: 545  --PTPSLSPPPPVQS 557
              P P   P  P  S
Sbjct: 1022 RAPAPEYVPEAPRHS 1036

Length = 1068

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 49.8 bits (119), Expect = 5e-06
 Identities = 32/164 (19%), Positives = 43/164 (26%), Gaps = 1/164 (0%)

Query: 467 PPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPP 526
            P       +   +   P   Q     SPP  +     R        P+  +     S  
Sbjct: 760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKR 819

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
                             P  + + PPP +S       P       R          P P
Sbjct: 820 KSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP 879

Query: 587 SPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQ-SPPPPSPPPP 629
              P   +PP  +   P    P P   P P V+  P PP  P P
Sbjct: 880 RARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDP 923

Length = 1352

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 25/146 (17%), Positives = 40/146 (27%), Gaps = 7/146 (4%)

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP 544
           P   S   P P      P  + PP  +    P+     ++ P  SP      PP   + P
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPA---ANPPATFALP 104

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPP-PVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPP 603
             P     P +Q+ P    P  +               P+   +     Q     +    
Sbjct: 105 AGP---AGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQL 161

Query: 604 VGSPPPPIQSPPPPVQSPPPPSPPPP 629
                   ++    +Q  P    PP 
Sbjct: 162 PSQQQSAQKNDESQLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 16/78 (20%), Positives = 22/78 (28%)

Query: 552 PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPI 611
           P    S    +  P    P     PP +P    +P       +P P         P P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 612 QSPPPPVQSPPPPSPPPP 629
            + P P       + PP 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 49.4 bits (118), Expect = 5e-06
 Identities = 26/138 (18%), Positives = 32/138 (23%), Gaps = 11/138 (7%)

Query: 369 PPSTPSAPTPKPSTSTPAQEPKTPAP-APPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
             +         S   P  +   P P          P V  P P       +P H   P 
Sbjct: 624 RATVGEMII---SGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPV-----GMPAHTARPS 675

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
            V    P  PT          P   +   P        PPP   A         S     
Sbjct: 676 RVARGDPVRPTAHHAAL--RAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASP 733

Query: 488 QSTPQPSPPPVSYPPPVR 505
            + P+P PP         
Sbjct: 734 TAPPEPEPPGAEQADGAE 751

Length = 753

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 49.7 bits (118), Expect = 5e-06
 Identities = 65/266 (24%), Positives = 81/266 (30%), Gaps = 30/266 (11%)

Query: 373 PSAPTPKPSTSTPAQEPKTPAP--APPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVE 430
                   S   PA +   P P   P    LPS       P             P    E
Sbjct: 660 SGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAGRAQPSEESHLSSMSPTQPISHEE 719

Query: 431 PPK---PSSPTPTTMPPKQEPPPLVQSPPP--SSPPPVSYPPPVRSAPPPSPMPSPS-SP 484
            P+   P  P   ++ P Q PPP  Q+P      P     P P    P P   P      
Sbjct: 720 QPRYEDPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPRPPQAPYLGYQE 779

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMP-SPSSPPPVYSPP-PPSPPPVSYPPPV--R 540
           P AQ     S P  + P  +R+  P      +  S  P +  P  P  P   + PP    
Sbjct: 780 PQAQGVQVSSYPGYAGPWGLRAQHPRYRHSWAYWSQYPGHGHPQGPWAPRPPHLPPQWDG 839

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
           S+      +S  P +QS   P                  P    S  P  P      +S 
Sbjct: 840 SAGHGQDQVSQFPHLQSETGP------------------PRLQLSQVPQLPYSQTLVSSS 881

Query: 601 PPPVGSPPPPIQSPPPPVQSPPPPSP 626
            P   SP P     P P + PPPP P
Sbjct: 882 APSWSSPQPRAPIRPIPTRFPPPPMP 907

Length = 1000

>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional

 Score = 49.3 bits (117), Expect = 5e-06
 Identities = 51/249 (20%), Positives = 71/249 (28%), Gaps = 13/249 (5%)

Query: 394 PAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPP--KPSSPTPTTMPPKQEPPPL 451
            + PT   P PPV  P P   +            + EPP      P P        P P+
Sbjct: 408 ASEPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGPLHDQHSMAPCPV 467

Query: 452 VQSPP----PSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP 507
            Q PP       P            P  +P+P+P+ P         S  P     PV   
Sbjct: 468 AQLPPGPLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPVMPQ 527

Query: 508 P-PPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV 566
           P P  P+P P+        P P    +  P              P P   +PP       
Sbjct: 528 PMPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQMS 587

Query: 567 LYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP------PPPVGSPPPPIQSPPPPVQS 620
           +     R    + P  +     PP +    P  P      P     P  P       +++
Sbjct: 588 VRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPGSPFSQVADVMRA 647

Query: 621 PPPPSPPPP 629
              P+  P 
Sbjct: 648 GGVPAMQPQ 656

Length = 935

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
           P P  SP      P P  P P   P P  P      P    SP      S P P Q PP 
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPA-----SAPTPEQQPPV 436

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPS 585
               P L P P  S P +  +  P 
Sbjct: 437 ARSAP-LPPSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 49.3 bits (117), Expect = 6e-06
 Identities = 38/193 (19%), Positives = 54/193 (27%), Gaps = 21/193 (10%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
             P       P    + P Q+P  P      P+   P       P  E      +  P  
Sbjct: 379 GYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAP-- 436

Query: 428 IVEPPKPSSPTPTTMPPKQEP--PPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
              P +P +        +Q    P        +   P +   P+   P P        P 
Sbjct: 437 --APEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAA-QEPLYQQPQPVEQQPVVEPE 493

Query: 486 PAQSTPQPSPPPVSYPPPVRSPPP-----------PSPMPSPSSPPPVYSPPPPSPPPVS 534
           P     +P+ PP+ Y   V                P P P     P   S   PS   V 
Sbjct: 494 PVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAV- 552

Query: 535 YPPPVRSSPPPTP 547
             PPV ++   +P
Sbjct: 553 --PPVEAAAAVSP 563

Length = 1355

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 26/106 (24%), Positives = 33/106 (31%), Gaps = 14/106 (13%)

Query: 529 SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPP--PSSPTPSPSP 586
                        +  P+P     PP  S  P          PV+ PP     P  +P P
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPR--------QPVQQPPEAQVPPQHAPRP 121

Query: 587 --SPPPPIQSPP--PTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
               P P+Q P   P    P      P +   P PV S P P+   
Sbjct: 122 AQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQA 167

Length = 333

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV 604
           P+  +S      +P  P+P P   PPP    P +  T   + +P PP     P  P P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 605 GSPPPPIQSPPPPVQSPPPPS 625
             P  P  +PP    + PP  
Sbjct: 421 --PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 48.4 bits (114), Expect = 6e-06
 Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 16/161 (9%)

Query: 445 KQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPV 504
           K+   P  +    ++ P  +   P ++A PP+   +  +   A      +PP  +  PP 
Sbjct: 206 KKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPA 265

Query: 505 RSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
           ++  PP+   +P +          +PP  +  PP +++  P  + + P    + P  +  
Sbjct: 266 KAAAPPAKAAAPPA-------KAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAA 318

Query: 565 PVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVG 605
           P         P  ++  P+ + +PP    +PP  +   PVG
Sbjct: 319 P---------PAKAAAPPAKAATPPAKAAAPPAKAAAAPVG 350

Length = 357

>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 41/225 (18%), Positives = 62/225 (27%), Gaps = 15/225 (6%)

Query: 392 PAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPL 451
           PA +      PSP V   +P         R +                 +  P+ +    
Sbjct: 78  PALSSERLLSPSPSVLDLSPVLASPQTGKRRRSS---SPSDDEDEAERPSKRPRSDSIS- 133

Query: 452 VQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPP----------VSYP 501
             S  P+ PP    P P  S        S +  P    +P  +P            +S  
Sbjct: 134 -SSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDG 192

Query: 502 PPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPP 561
             + +P  P     P +          +     +   V SSP    +   PPPV    P 
Sbjct: 193 FQLPAPKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAPD 252

Query: 562 SPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
              P+          P  P  +     P  + S   T   P + S
Sbjct: 253 DSTPLDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTS 297

Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 451 LVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPP------PV 504
            +     + P  +  PPP  S+ P  P  S S  P A STP    P VS+ P      P 
Sbjct: 174 QIGGRGGNIPGAIQPPPP--SSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPA 231

Query: 505 RSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV 539
           +   PP+ +P+P  PP +    PP  PP     P+
Sbjct: 232 QPSAPPASIPAPPIPPVIQYVAPPPVPPPQPIIPI 266

Length = 582

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 20/77 (25%), Positives = 23/77 (29%), Gaps = 6/77 (7%)

Query: 552 PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPI 611
           P P  SP      P    P +  P        P      P + P P S P P   PP   
Sbjct: 382 PSPAGSPDVKKKAP---EPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVA- 437

Query: 612 QSPPPPVQSPPPPSPPP 628
                P+   P  S P 
Sbjct: 438 --RSAPLPPSPQASAPR 452

Length = 620

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 49.0 bits (116), Expect = 6e-06
 Identities = 52/287 (18%), Positives = 78/287 (27%), Gaps = 12/287 (4%)

Query: 345 PTECYPVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTP-AQEPKTPAPAPPTPSLPS 403
           P    P  +     +    +   S     ++PTP     T  A  P T   + P  + P 
Sbjct: 497 PNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQ 556

Query: 404 PPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEP-PPLVQSPPPSSPPP 462
               SP   T   N       P ++            + P  Q+P  P      P S   
Sbjct: 557 VTEESPVNNT---NTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNST 613

Query: 463 VSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPV 522
            + P    + P      +  +P    +T   +  P   P P  +     P  S +S  P 
Sbjct: 614 STTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPG--PGPGTTSQVSGPGNSSTSRYPG 671

Query: 523 YSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTP 582
                   P     P   S   P+   +  P V S    +               +SP  
Sbjct: 672 EVHVTEGMPN----PNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHT 727

Query: 583 SPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           +       P  +     P        P      PPV +     P PP
Sbjct: 728 NEGAFRTTPYNATTYLPPSTS-SKLRPRWTFTSPPVTTKQATVPVPP 773

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 39/141 (27%), Positives = 47/141 (33%), Gaps = 17/141 (12%)

Query: 372 TPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEP 431
                 P  +    A  P       P P   + P      P       P  +VPP     
Sbjct: 69  HRVNHAPANAQEHEAARPSPQHQYQP-PYASAQPRQPVQQP-------PEAQVPPQHAPR 120

Query: 432 PKPSSPTPTTMPPKQEPP--PLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
           P   +P P   P  Q  P  PL Q   P   P    P PV SAP     P+  +  PA+ 
Sbjct: 121 PAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPA---PQPVHSAPQ----PAQQAFQPAEP 173

Query: 490 TPQPSPPPVSYPPPVRSPPPP 510
              P P PV+ P PV   P  
Sbjct: 174 VAAPQPEPVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 60/265 (22%), Positives = 77/265 (29%), Gaps = 4/265 (1%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEW-NRVPRHKVPP 426
            P     A                P    P    P     S  PP+ ++ +++P  +V  
Sbjct: 50  PPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQS 109

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPP 486
           +  +P     P        Q PP          PPP         +PP  P    + PP 
Sbjct: 110 VPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQ 169

Query: 487 AQSTPQPSPPPVSYPP-PVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPP 545
           AQS PQ S       P   +S PP  P+PS  +  P YS  PPS      P P       
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG 229

Query: 546 TPSLSPP-PPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV 604
                    P    PPPS     Y      PP      S +   P        T+ P   
Sbjct: 230 PGGRPNSGFPSGQQPPPSQGQEGYGYS-GPPPSKGNHGSVASYAPQGSSQSYSTAYPSLP 288

Query: 605 GSPPPPIQSPPPPVQSPPPPSPPPP 629
            +   P   P          S  P 
Sbjct: 289 AATVLPQALPMSSAPMSGGGSGSPQ 313

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.8 bits (116), Expect = 7e-06
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 539 VRSSPPPTPSLSPPPPVQSPPPPSPPPVL---YPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
           VR+     PS +  P V+   P    P       P     P + P   PSP+  P  +  
Sbjct: 374 VRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ 433

Query: 596 PPTSPPPPVGSPPPPIQSPPPPVQSPPP 623
           PP +   P+  PP P  S P  V S  P
Sbjct: 434 PPVARSAPL--PPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 11/112 (9%)

Query: 473 PPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPP 532
           P P     P   P A +   P+ PP      VR+    +P   P++  P  +P  P P P
Sbjct: 45  PKPGDRDEPDMMPAA-TQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAP 103

Query: 533 VSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP 584
           V  PP  +    P P   P   V++PP P P P          P      +P
Sbjct: 104 VE-PPKPKPVEKPKPKPKPQQKVEAPPAPKPEP---------KPVVEEKAAP 145

Length = 226

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 550 SPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPP 609
           +P PP  +   P+P     PPP  +PP     P       P    P P   PP   +PP 
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAP-----ARPAAARPAPAPAPPAAAAPPA 435

Query: 610 PIQSPPPPVQSPP 622
               P     +  
Sbjct: 436 RSADPAAAASAGD 448

Length = 576

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 24/102 (23%), Positives = 27/102 (26%), Gaps = 4/102 (3%)

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS---YPPPVRS 541
           P  Q      P     P P R       +P+   PP       P P PV        +  
Sbjct: 115 PAPQEETVADPIQALQPRP-RPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAV 173

Query: 542 SPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPS 583
               TP     PP   PPPP  P        R         S
Sbjct: 174 PAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRRSRIKRTRSS 215

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.3 bits (116), Expect = 9e-06
 Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 14/154 (9%)

Query: 367 GSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
            +P ++  A     +   P Q P  P P    P     P       T             
Sbjct: 375 AAPAASAQATAAPTAAVAPPQAPAVPPPPASAP--QQAPAVPLPETT-----------SQ 421

Query: 427 IIVEPPKPSSPTPTTMPPKQEPP-PLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
           ++    +       T   K EP       P  S+   ++   P  SA   +P    +   
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRW 481

Query: 486 PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSP 519
            A +  +    PV+ P  ++        P  ++ 
Sbjct: 482 KATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515

Length = 647

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (116), Expect = 9e-06
 Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 1/75 (1%)

Query: 491 PQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLS 550
              S    +  P   +P P    P     P        +  P S PP   S P P P+  
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTP-SPPPAKASPPIPVPAEP 421

Query: 551 PPPPVQSPPPPSPPP 565
             P    P   +  P
Sbjct: 422 TEPSPTPPANAANAP 436

Length = 620

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 38/169 (22%), Positives = 50/169 (29%), Gaps = 12/169 (7%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
           P     + PP    +    P       P+    S     R     +P     S  P   P
Sbjct: 780 PQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPP 839

Query: 526 PP-PSPPPVSYPPPVRSSPPPTPSL----SPPPPVQSPPPPSPPPVLYPPPVRSPPPSSP 580
                PPP       +S P          +     + P P + P    PP   +  P  P
Sbjct: 840 GAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP--P 897

Query: 581 TPSPSPSPPPPIQSPPPTSPPPPVGSPPPP--IQSPPPPVQSPPPPSPP 627
             +P+P P P    P     P P G P P    +  PP     P PS  
Sbjct: 898 AGAPAPRPRPA---PRVKLGPMPPGGPDPRGGFRRVPPGDLHTPAPSAA 943

Length = 1352

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (116), Expect = 1e-05
 Identities = 17/75 (22%), Positives = 24/75 (32%)

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTS 599
             S     S    P     P P P P+    P      ++P+P P+ + PP      PT 
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423

Query: 600 PPPPVGSPPPPIQSP 614
           P P   +        
Sbjct: 424 PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 452 VQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPS 511
            QS   S+      PP     PP    P P     A     P PPP +      +P    
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 512 PMPSPSSPPPVYSPPPPSPPPVSYPPP 538
              SP  P     P  P+P P     P
Sbjct: 572 ADSSPPPPI----PEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 23/81 (28%), Positives = 28/81 (34%)

Query: 471 SAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSP 530
           SA   +  P P    P    P P  P  +   P  +PPPP P  + +S       P  S 
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 531 PPVSYPPPVRSSPPPTPSLSP 551
           PP   P     SP    S   
Sbjct: 576 PPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 482 SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRS 541
            S   ++     +P   +  P    PP P    +P +         PSPPP    PP+  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQA---ATTPSPPPAKASPPIPV 417

Query: 542 SPPPTPSLSPPPPVQSPPPPS 562
              PT     PP   +  PPS
Sbjct: 418 PAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 436 SPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSP 495
            P  T  P          +  P++ P    P     APP +   +P++PP   +    + 
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA--AAPAAPPKPAAAAAAAA 94

Query: 496 PPVSYPPPVRSPPPPSPMPSPSSPP 520
            P + P    +  P +        P
Sbjct: 95  APAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 8/86 (9%)

Query: 425 PPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSP 484
           P     P   ++            P       P+  PP        +A  P+  P P++ 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP--------AAAAPAAPPKPAAA 89

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPP 510
             A + P   P   +   P  +    
Sbjct: 90  AAAAAAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 23/107 (21%), Positives = 29/107 (27%), Gaps = 4/107 (3%)

Query: 509 PPSPMPSPSSPPPVYSP-PPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVL 567
                P     P    P   P P   +   P  S        S P     P   +PP V 
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQP-AGTPPTVS 428

Query: 568 YPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSP 614
             PP  +  P +P  +   +  P         P   V S  P    P
Sbjct: 429 VDPP--AAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 28/127 (22%), Positives = 38/127 (29%), Gaps = 19/127 (14%)

Query: 367 GSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
            S    P     KP  + PA  P+  A A  +PS   P  +S                 P
Sbjct: 369 ASGGRGPKQHI-KPVFTQPAAAPQPSAAAAASPS---PSQSSAAAQ-------------P 411

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPP 486
              +     + TP T+    +PP  V   PPS+ P    P   +           S  P 
Sbjct: 412 SAPQSATQPAGTPPTVS--VDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPS 469

Query: 487 AQSTPQP 493
                Q 
Sbjct: 470 TLRPIQE 476

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 22/89 (24%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPS--PSPPPPIQSPPPTSP 600
                      PV + P  +P P        SP  SS    PS   S   P  +PP  S 
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429

Query: 601 PPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
            PP   P  P  + P  V+          
Sbjct: 430 DPPAAVPVNPPSTAPQAVRPAQFKEEKKI 458

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 21/106 (19%), Positives = 29/106 (27%), Gaps = 4/106 (3%)

Query: 455 PPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMP 514
                P     P   + A  P P  + ++ P    +   + P    P     P    P  
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSA--PQSATQPAGTPPTV 427

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL--SPPPPVQSP 558
           S   P  V   PP + P    P   +       S   S  P    P
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 12/97 (12%)

Query: 536 PPPVRSSPPPTPSLS-----PPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPP 590
                      P  +     P P   +   PSP             PS+P  +  P+  P
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ-----PSAPQSATQPAGTP 424

Query: 591 PIQSPPPTSPPP--PVGSPPPPIQSPPPPVQSPPPPS 625
           P  S  P +  P  P  + P  ++      +   P S
Sbjct: 425 PTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVS 461

Length = 614

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 6/103 (5%)

Query: 432 PKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTP 491
           P  ++      PP    P       P++P     P  V  A       +      A++  
Sbjct: 53  PPAAAAPAAAQPPPAAAPA--AVSRPAAPAAEPAPWLVEHAKRL---TAQREQLVARAAA 107

Query: 492 QPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
             +P   + P                +     +P P  P   +
Sbjct: 108 PAAPEAQA-PAAPAERAAAENAARRLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 28/125 (22%), Positives = 34/125 (27%), Gaps = 9/125 (7%)

Query: 508 PPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPP-PVQSPPPPSPP-- 564
                    S  PPV+    P P    Y     +  P  P   P   P  +  P      
Sbjct: 624 RATVGEMIISGFPPVFKTALPRP---DYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARG 680

Query: 565 PVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPP 624
             + P    +   +   P P   P      PPP   P   G  P        P     PP
Sbjct: 681 DPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASP---TAPP 737

Query: 625 SPPPP 629
            P PP
Sbjct: 738 EPEPP 742

Length = 753

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 55/303 (18%), Positives = 79/303 (26%), Gaps = 34/303 (11%)

Query: 357 DCSKDECSWGGSPP---STPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPT 413
           D   D   +   P     + S  T                 AP T S    P  SP+P +
Sbjct: 320 DEDGDGSGFAPEPLIKTDSRSNDTLVDLGRGGGSLKLDSVDAPGTSSYLFEPGLSPSPNS 379

Query: 414 WEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPP------SSPPPVSYPP 467
                +P       +  P   +S   T M P+ +    V+             P ++   
Sbjct: 380 G--KEMPGILTTENLDLPL--ASTDSTEMDPEDKRGGAVKINNSGILAWGLKTPGLAVND 435

Query: 468 PVRSAPPPSPMPSPS-SPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPV---- 522
               A     +      P P +            PP  R    P+     +  P V    
Sbjct: 436 ERSIAVSSDGITDVLDPPSPLRLHSSDKVIDSVSPPSKRRVSAPASRLDDAKRPEVTATP 495

Query: 523 YSPPPPSPPPVSYPPPVRSSPP------PTPSLSPPPPVQSPPPPSPP---PVLYPPPVR 573
            S    S    S      SS                   +SPPP SPP     L      
Sbjct: 496 ESSGSDSEGGASGREDETSSDAESVVSIKELRPRIGFINKSPPPKSPPKSRRTLIVALSL 555

Query: 574 SPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV-------GSPPPPIQSPPPPVQSPPPPSP 626
           + P ++ +P P PS    +    P +    V       G         P    S  P + 
Sbjct: 556 ASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTG 615

Query: 627 PPP 629
           P  
Sbjct: 616 PGS 618

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 31/196 (15%), Positives = 40/196 (20%), Gaps = 12/196 (6%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
               +  T    P   E         P+S       PP  +  PP      SSP      
Sbjct: 66  VATSTIYTVPRPPRGPEQTLDKPDSLPASREL----PPGPTPVPPGGFRGASSPRLGA-- 119

Query: 491 PQPSPPPVSYPPPVRSPPP----PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
              SP  +          P     S     S       PPP     V      +  P   
Sbjct: 120 DSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKV--KNGGKVYPKGF 177

Query: 547 PSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
                    +                   P      S S      +     T P      
Sbjct: 178 SKHKTHKRSEFSGLTKKAARKRKGSFVFKPSQLKELSGSLKNLLHLDDSAETDPATRQVP 237

Query: 607 PPPPIQSPPPPVQSPP 622
            P  +  PP   +  P
Sbjct: 238 VPVHVLYPPLLTEYVP 253

Length = 580

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 577 PSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           P+ P+ +     P    +PPP + PP   + P    +  P     PP +  PP
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPP 434

Length = 576

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 4/82 (4%)

Query: 514 PSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVR 573
           PSP+  P V    P    P     P R   P  P      P + P P S P     PPV 
Sbjct: 382 PSPAGSPDVKKKAPEPDLP----QPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVA 437

Query: 574 SPPPSSPTPSPSPSPPPPIQSP 595
              P  P+P  S         P
Sbjct: 438 RSAPLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 451 LVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPP 510
           LV++    +P P   P   + AP P        P PA    +P  P      P   P P 
Sbjct: 373 LVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPA----KPEAPGAR---PAELPSPA 425

Query: 511 SPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLS 550
           S  P+P   PPV    P  P P +  P   +S  P   L 
Sbjct: 426 SA-PTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLG 464

Length = 620

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 48.2 bits (114), Expect = 1e-05
 Identities = 59/274 (21%), Positives = 84/274 (30%), Gaps = 32/274 (11%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVA---------SPTPPTWEWNR 418
           +P +T S        +    EP      P TPSLP              S TP     + 
Sbjct: 425 APDTTKSVIF---VYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSST 481

Query: 419 VPRHKVPPIIVEPPKPSSPTPTTMPPKQE--PPPLVQSPPPS---SPPPVSYPPPVRSAP 473
           +P    P        P++ +PT          P   ++       SP P+       +  
Sbjct: 482 LPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATS 541

Query: 474 PPSPMPSP---SSPPPAQSTPQP--SPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP 528
           PP+   S    +SP   + +P    + P V+  P V +    +      S P   +   P
Sbjct: 542 PPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSP---TSQQP 598

Query: 529 SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPS--- 585
             P  S+  P  +S   TP L+   P          P +  P        SP P P    
Sbjct: 599 GIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSV--PSTTHVSTLSPGPGPGTTS 656

Query: 586 --PSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPP 617
               P     S  P       G P P   SP  P
Sbjct: 657 QVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAP 690

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 39/175 (22%), Positives = 58/175 (33%), Gaps = 6/175 (3%)

Query: 453 QSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSP 512
           ++P  +      Y          + +P+  S PPA + P  S    +   P  +     P
Sbjct: 424 KAPDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLP 483

Query: 513 -MPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPP 571
              SP+S     S  P +  P        ++ P T   S  P   SP P           
Sbjct: 484 EDTSPTSR--TTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVT---TT 538

Query: 572 VRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
             SPP  + +   + SP    +SP   +  P V S P  + S     Q     SP
Sbjct: 539 ATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSP 593

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 37/198 (18%), Positives = 59/198 (29%), Gaps = 8/198 (4%)

Query: 372 TPSAPTPKPSTSTPAQEPKTPAPAPPTP-SLPSPPVASPTPPTWE-WNRVPRHKVPPIIV 429
           +PSA T +  T+    +P+  A    TP    S         T    +    + VPP   
Sbjct: 379 SPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWED 438

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSA--PPPSPMPSPSSPPPA 487
            P        T     Q     +Q+   +  PP +     ++A     +P+    S  P 
Sbjct: 439 AP----DEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPI 494

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
           Q+TP                 P      P +  P        PP   +  P  ++     
Sbjct: 495 QATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGAD 554

Query: 548 SLSPPPPVQSPPPPSPPP 565
             +    +     PS PP
Sbjct: 555 EEAEAGGIGGNNTPSAPP 572

Length = 709

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 34/135 (25%), Positives = 42/135 (31%), Gaps = 9/135 (6%)

Query: 473 PPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSP----PPVYSPPPP 528
           P   P    +     Q   QP  P   Y  P +   P      P  P    P    P  P
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810

Query: 529 SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPS-PS 587
             P   Y  P +   P      P    Q P  P P   L  P +     S P   P+ P 
Sbjct: 811 VAPQPQYQQPQQPVAPQPQYQQP----QQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPL 866

Query: 588 PPPPIQSPPPTSPPP 602
           P   + +PPP+   P
Sbjct: 867 PSLDLLTPPPSEVEP 881

Length = 1355

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 19/78 (24%), Positives = 24/78 (30%)

Query: 525 PPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP 584
           P        +   P   +P P PS  P P   S P          PP     P  P P+ 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 585 SPSPPPPIQSPPPTSPPP 602
              P P   +    +PP 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 23/78 (29%)

Query: 530 PPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPP 589
           P          S+P        P P  +P  PS P         SPPP+  +P       
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 590 PPIQSPPPTSPPPPVGSP 607
           P   SP P +        
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 481 PSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
             S     S P    P  +  PP     P +P    ++  P  SPPP    P    P   
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTP--SPPPAKASPPIPVPA-- 419

Query: 541 SSPPPTPSLSPPPPVQSPPPPS 562
              P  PS +PP    + PP  
Sbjct: 420 --EPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.0 bits (115), Expect = 2e-05
 Identities = 14/82 (17%), Positives = 27/82 (32%)

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
           P    +P   +   + ++  P  +P   +P   +  PP  ++P   P  +      + P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 561 PSPPPVLYPPPVRSPPPSSPTP 582
             P       P  +      TP
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 27/119 (22%), Positives = 37/119 (31%), Gaps = 8/119 (6%)

Query: 484 PPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSP 543
           P   Q  P+P   P   P P+  PP  +P+  P   P     P P P PV          
Sbjct: 61  PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKRE 120

Query: 544 PPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPS-PSPPPPIQSPPPTSPP 601
                  P  P ++  P  P          +   ++  P  S  S P  +    P  P 
Sbjct: 121 VKPVEPRPASPFENTAPARPTSS-------TATAAASKPVTSVSSGPRALSRNQPQYPA 172

Length = 246

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 118 NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNF 168
           NRL  I    F  +  L+  D+S N L       A +   +L  LDL  NN 
Sbjct: 10  NRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 493 PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPP 552
           PSP      PP     P +P  + +      +  P +  P      + + P    + + P
Sbjct: 392 PSPGGGGGGPPGGGGAPGAPAAAAAPGAA--AAAPAAGGPA---AALAAVPDAAAAAAAP 446

Query: 553 PPVQSPPPPSPPP 565
           P   + P P+   
Sbjct: 447 PAPAAAPQPAVRL 459

Length = 598

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 19/65 (29%), Positives = 25/65 (38%)

Query: 505 RSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
            +P PPS      +P    +PPP + PPV    P R +         PP   +PP  S  
Sbjct: 380 GAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSAD 439

Query: 565 PVLYP 569
           P    
Sbjct: 440 PAAAA 444

Length = 576

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 19/201 (9%)

Query: 445 KQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPV 504
           + + P    +P P+   P     PV +    S   + S      S  +     ++   PV
Sbjct: 59  RSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPV 118

Query: 505 ---RSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPP 561
              R  P  +P+ + S P P       +    + P     +    P       + + P P
Sbjct: 119 SVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQ-EHALSAVPEQLFADFLTTAPVP 177

Query: 562 SPPPVLYPPPVRSPPPSSPTPSPSPSPP---------PPI----QSPPPTSPPPPVGSPP 608
             P         +P P+      + +                   + P   PP  +  PP
Sbjct: 178 RAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAAL--PP 235

Query: 609 PPIQSPPPPVQSPPPPSPPPP 629
             +    P   +    + P P
Sbjct: 236 IVVAPAAPAALAAVAAAAPAP 256

Length = 559

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 448 PPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP 507
           P P  ++P P  P   +     R    P P   P+   PAQ     +P       P + P
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQP 233

Query: 508 PPPSPMPSPSSPPPVYSPPPPSPP 531
             P+  P+P +P      PP +  
Sbjct: 234 VQPAQQPTPQNPAQ---QPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 31/80 (38%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 553 PPVQSPPPPSPPPVLYPPPVRSPPPSSPTPS---PSPSPPPPIQSPPPTSPPPPVGSPPP 609
           P    PPPPS  P L P      P +S TP    P  S  P +  P P  P  P  S P 
Sbjct: 183 PGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPA 242

Query: 610 PIQSPPPPVQSPPPPSPPPP 629
           P    PP +Q   PP  PPP
Sbjct: 243 PPI--PPVIQYVAPPPVPPP 260

Length = 582

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 479 PSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPP 538
           PSP+  P  +        P     P R P P  P  +P + P     P  +P P   PP 
Sbjct: 382 PSPAGSPDVKKKAPEPDLP----QPDRHPGPAKP-EAPGARPAELPSPASAPTPEQQPPV 436

Query: 539 VRSSP-PPTPSLSPPPPVQSPPP 560
            RS+P PP+P  S P  V S  P
Sbjct: 437 ARSAPLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 38/228 (16%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSL-PSPPVASPTPPTWEWNRVPRHKVPP 426
           +P +  S        +T  Q P        T +  P P   + T  T         +   
Sbjct: 359 APLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQT-------PVQTAS 411

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPP 486
               P +  +  P +     + PP   +P  +     +     +S    S      +PP 
Sbjct: 412 AAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTAS---EAETPPE 468

Query: 487 AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPP---PVYSPPPPSPPPVSYPPPVRSSP 543
            Q +   +    +  P    P       +P+        ++   P+ P   Y  P    P
Sbjct: 469 NQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCP 528

Query: 544 PPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPP 591
           P   +  PPP  +   P                      + +PS PPP
Sbjct: 529 PEDGAEIPPPDWEHAAPADTAG---GGADEEAEAGGIGGNNTPSAPPP 573

Length = 709

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 2/146 (1%)

Query: 463 VSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPV 522
           V+ P  +      S +P+ ++   A +T +           V  P   SP    SS P  
Sbjct: 282 VTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTD 341

Query: 523 YSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTP 582
                           V   P   P++  P P++ P P  PP      P    PP    P
Sbjct: 342 IGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPP--GLAIPSLVAPPGLVAP 399

Query: 583 SPSPSPPPPIQSPPPTSPPPPVGSPP 608
           +                   PV    
Sbjct: 400 TEINPSFLASPRKKMKREKLPVTFGA 425

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 27/127 (21%), Positives = 40/127 (31%), Gaps = 5/127 (3%)

Query: 505 RSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP- 563
           +   PP  +  P++   +  P   +    +    + ++     +    P  QSP  PS  
Sbjct: 280 KCVTPPDALLQPATVSAI--PAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSS 337

Query: 564 -PPVLYPPPVRSPPPSSPTPSPS-PSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSP 621
            P  +    V S         P  P   P +  P P   P PV  P   I S   P    
Sbjct: 338 LPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLV 397

Query: 622 PPPSPPP 628
            P    P
Sbjct: 398 APTEINP 404

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 28/78 (35%), Positives = 38/78 (48%)

Query: 513 MPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPV 572
           +P P  P PV    PP P  +    P  + P P+   S PPP  + PPP+  P    PP+
Sbjct: 141 LPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPL 200

Query: 573 RSPPPSSPTPSPSPSPPP 590
           +SP   +   SP+P  PP
Sbjct: 201 KSPMAGTFYRSPAPGEPP 218

Length = 274

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 33/184 (17%), Positives = 48/184 (26%), Gaps = 6/184 (3%)

Query: 408 SPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPP 467
           S  P              P       P                   +   +S        
Sbjct: 762 SLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKS 821

Query: 468 PVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPP 527
              +    S    P+ PP A    +P P   S     +           +       P P
Sbjct: 822 RSHTPDGGSESSGPARPPGA--AARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEP 879

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPV----RSPPPSSPTPS 583
            + P  + PP   ++ PP  + +P P         P P   P P     R PP    TP+
Sbjct: 880 RARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHTPA 939

Query: 584 PSPS 587
           PS +
Sbjct: 940 PSAA 943

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 27/118 (22%), Positives = 35/118 (29%), Gaps = 14/118 (11%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
                ++PS P            P     +P   SLP  P +  +              P
Sbjct: 177 ADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDT------------P 224

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSS 483
           P   E P   SP P   P    PPP+ Q PP S+  P         AP         +
Sbjct: 225 PPSPESPTNPSPPPG--PAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 26/148 (17%), Positives = 35/148 (23%), Gaps = 16/148 (10%)

Query: 392 PAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPL 451
           P+P  P P    P      PPT         +    +    +    TPT  P     PP 
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPT---------QALQALPAGDQQQHNTPTGSPA--ANPPA 99

Query: 452 VQSPPPSSPPPVSYPPPVRSAPPPSP-----MPSPSSPPPAQSTPQPSPPPVSYPPPVRS 506
             + P     P     P +  P   P      P+ S                 Y  P   
Sbjct: 100 TFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASG 159

Query: 507 PPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
             P     +  +        P    P  
Sbjct: 160 QLPSQQQSAQKNDESQLQQQPNGETPPQ 187

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.2 bits (113), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
           G +   T +A     + S PA  P   APA P P+ P+    +  P              
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP-----AAAAAAA 93

Query: 426 PIIVEPPKPSSPTPTTMPPKQ 446
                PP  ++         +
Sbjct: 94  AAPAAPPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.2 bits (113), Expect = 3e-05
 Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 5/74 (6%)

Query: 556 QSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPP 615
             P   + P         +   +S   +   +  P   +P P  P     + PP   +  
Sbjct: 36  YGPGSTAAPT---AAAAAAAAAASAPAAAPAAKAPA--APAPAPPAAAAPAAPPKPAAAA 90

Query: 616 PPVQSPPPPSPPPP 629
               +P  P     
Sbjct: 91  AAAAAPAAPPAAAA 104

Length = 1228

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 27/133 (20%), Positives = 34/133 (25%), Gaps = 6/133 (4%)

Query: 460 PPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYP-PPVRSPPPPS---PMPS 515
            PP         A             P Q+  +P   P S   PP  +P PP       S
Sbjct: 55  YPPRETGSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASS 114

Query: 516 PSSPPPVYSPPPPSPP-PVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS 574
           P       SP             P+  S   +  LS       PPP      +       
Sbjct: 115 PRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSES-LKVKNGGKVY 173

Query: 575 PPPSSPTPSPSPS 587
           P   S   +   S
Sbjct: 174 PKGFSKHKTHKRS 186

Length = 580

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 2/73 (2%)

Query: 457 PSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSP 516
           P SP      PP     P +P  + +    A +     P       P  +    +P    
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 517 SSPPPVYSPPPPS 529
           ++P P       S
Sbjct: 451 AAPQPA--VRLNS 461

Length = 598

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 536 PPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
           P     +P P    + PPP  +PP P   P     P  + P  +P P+P  +  PP +S 
Sbjct: 385 PSAAWGAPTPAAP-AAPPPAAAPPVPPAAP---ARPAAARP--APAPAPPAAAAPPARSA 438

Query: 596 PPTSPP 601
            P +  
Sbjct: 439 DPAAAA 444

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 562 SPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSP 621
             PP           P++P P+ +P  PP   + P  + P P    P P  +  PP +S 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAP---APAPPAAAAPPARSA 438

Query: 622 PPPSPP 627
            P +  
Sbjct: 439 DPAAAA 444

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 493 PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPP 552
           P+PP  ++  P  +P  P+  P  ++PP    PP     P +  P    +P P P  +  
Sbjct: 382 PAPPSAAWGAP--TPAAPAAPPPAAAPPV---PPAAPARPAAARP----APAPAPPAAAA 432

Query: 553 PPVQSPPPPSPP 564
           PP +S  P +  
Sbjct: 433 PPARSADPAAAA 444

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 482 SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMP-SPSSPPPVYSPPPPSPPPVSYPPPVR 540
           +  PP+ +   P+P   + PPP  +PP P   P  P++  P  +P PP+           
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440

Query: 541 SSPPPTPS 548
           ++      
Sbjct: 441 AAAASAGD 448

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 571 PVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
           P             +P+ PPP  +PP          P  P  + P P  +PP  + PP
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAA-----PARPAAARPAPAPAPPAAAAPP 434

Length = 576

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 22/97 (22%), Positives = 29/97 (29%), Gaps = 11/97 (11%)

Query: 478 MPSPSSPPPAQSTPQPSPPPVSYPPP-----------VRSPPPPSPMPSPSSPPPVYSPP 526
           +P+  +   A  T  P  PP   P P            R    P P   P+   P   P 
Sbjct: 158 IPAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPT 217

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP 563
             +P       P +    P    +P  P Q PP    
Sbjct: 218 VQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045)

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 27/124 (21%), Positives = 34/124 (27%), Gaps = 3/124 (2%)

Query: 505 RSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
              P  S +P   S        P  P   +       S  P P  +  P      PP   
Sbjct: 216 SKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDT 275

Query: 565 PVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPP 624
                    + P  S   S     P  +   P    P P+ SP    + P  P    P P
Sbjct: 276 TEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSP---RPKP 332

Query: 625 SPPP 628
             PP
Sbjct: 333 QSPP 336

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 18/76 (23%), Positives = 24/76 (31%)

Query: 434 PSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQP 493
           PS       PP   P  L Q          S      +A   +  P P   P  +  P P
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAP 405

Query: 494 SPPPVSYPPPVRSPPP 509
            P   +  PP+ +P  
Sbjct: 406 EPARSAEAPPLVAPAA 421

Length = 504

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.5 bits (111), Expect = 4e-05
 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 423 KVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPS 482
             PP    PP P+   P   P    PPP    PPP++    S  P     P  S  P P 
Sbjct: 523 TPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPA--QIPADSSPPPPI 580

Query: 483 SPPPAQSTPQPSPP 496
              P  S  + S P
Sbjct: 581 PEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 448 PPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP 507
           P   +     +S P    P P     PP     PS+P   Q+   PSPPP    PP   P
Sbjct: 361 PSAFISEIANASAPANPTPAPN--PSPPPAPIQPSAPKTKQAATTPSPPPAKASPP--IP 416

Query: 508 PPPSPMPSPSSPPPVYSPPPPS 529
            P  P     +PP   +  PPS
Sbjct: 417 VPAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 5/105 (4%)

Query: 386 AQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSP----TPTT 441
            +  + P  +P   ++  PP     P      +        ++  P  P  P        
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAP 439

Query: 442 MPPKQEPPPL-VQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
           M   + P      +       PV YPP  +S P    +P P S  
Sbjct: 440 MNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTA 484

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 1/91 (1%)

Query: 456 PPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPS 515
           P ++    + PP   +    +   +  S  PA   P  +P      P     P P   P 
Sbjct: 57  PAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPK 116

Query: 516 PSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
           P   P      PP+P P    P V     PT
Sbjct: 117 PKPKPQQKVEAPPAPKPEP-KPVVEEKAAPT 146

Length = 226

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 2/74 (2%)

Query: 556 QSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPP 615
           + PP P        PP     P +P  + +P       +    +             + P
Sbjct: 389 EGPPSPGGGGG--GPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAP 446

Query: 616 PPVQSPPPPSPPPP 629
           P   + P P+    
Sbjct: 447 PAPAAAPQPAVRLN 460

Length = 598

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 436 SPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAP-PPSPMPSPSSPP-PAQSTPQP 493
           +P P +       P    +PPP++ PPV    P R A   P+P P+P +   P   +  P
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440

Query: 494 SPPP 497
           +   
Sbjct: 441 AAAA 444

Length = 576

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 26/68 (38%), Positives = 35/68 (51%)

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQS 620
           P+PPP        +P P++P P P P+ PP  Q   P + PPP  + P     PP    +
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100

Query: 621 PPPPSPPP 628
           PPPP+P P
Sbjct: 101 PPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 33/144 (22%), Positives = 42/144 (29%), Gaps = 18/144 (12%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTP-----PTWEWNRVP 420
           G   P+   A  P  +    A  P+  A A       + P A+P P     P WE     
Sbjct: 446 GAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPE 505

Query: 421 RHKVPPIIVEP-----PKPSSPTPTTMPPKQEPPPLVQSPPPSSPPP--------VSYPP 467
                P   +         S P P T  P      L  +P  +  P         V+  P
Sbjct: 506 FASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565

Query: 468 PVRSAPPPSPMPSPSSPPPAQSTP 491
           P  SA     M     P  A   P
Sbjct: 566 PRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 46.2 bits (109), Expect = 5e-05
 Identities = 39/184 (21%), Positives = 57/184 (30%), Gaps = 14/184 (7%)

Query: 446 QEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVR 505
           Q P P+        PP      P  SAP   PMP    P            P+++   V 
Sbjct: 594 QTPWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQ-----PITFNVLVF 648

Query: 506 SPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPP 565
             P   P    +   P ++     P   S        P      +  PP ++P P  PP 
Sbjct: 649 PTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPA 708

Query: 566 VLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPS 625
              PP     P ++   +  P+  P           PP  +P         P ++ PP +
Sbjct: 709 A--PPGRAQRPAAATGRARPPAAAP-------GRARPPAAAPGRARPPAAAPGRARPPAA 759

Query: 626 PPPP 629
            P  
Sbjct: 760 APGR 763

Length = 991

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 5e-05
 Identities = 21/79 (26%), Positives = 30/79 (37%)

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
           P    S    +  P+  +P P  SPPP    P +      ++ P  P     PP+  P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 561 PSPPPVLYPPPVRSPPPSS 579
           P+ P    P    + PPS 
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 367 GSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
            S  ++ +A TP P   +P     TP    PT + P P    P P   + +     ++P 
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPA 572

Query: 427 IIVEPPKPSSPTPTTMPPKQEPP 449
               PP      PT  P K   P
Sbjct: 573 DSSPPPPI-PEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 454 SPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPM 513
           S   ++  P           P  P+P P++  P   TP P PP  +          P+  
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPP-PTPPPPPPTATQASSNAPAQIPADS 574

Query: 514 PSPSSPPPVYSPPPPSPPPVS 534
             P   P   +P P       
Sbjct: 575 SPPPPIPEEPTPSPTKDSSPE 595

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.4 bits (111), Expect = 5e-05
 Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPP 503
           P     P   +   ++        P   AP   P P+P +     + P+P+    +   P
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAA-PAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 504 VRSPPPPSPMPSPSSPPP 521
              P   +     ++   
Sbjct: 97  AAPPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 23/123 (18%), Positives = 32/123 (26%), Gaps = 15/123 (12%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSY--------PPPVRSAPPPSPM---- 478
           P     P  + M      PP     P                 P P+    P  P     
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAP 439

Query: 479 PSPSSPPPA---QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSY 535
            +    P      +  +P   PV YPP  +S P    +P P S              ++ 
Sbjct: 440 MNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLAS 499

Query: 536 PPP 538
             P
Sbjct: 500 ATP 502

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 23/113 (20%), Positives = 30/113 (26%), Gaps = 13/113 (11%)

Query: 525 PPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP-PPVRSPPP------ 577
            PP           V +S   T    P  P Q+   P   P     PP  +P P      
Sbjct: 55  YPPRETGS---GGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRG 111

Query: 578 -SSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSP--PPPVQSPPPPSPP 627
            SSP      + P  +          P+G      +          PPP    
Sbjct: 112 ASSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESL 164

Length = 580

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 537 PPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPP 596
           P     PPP+     PP   S  P +        P  S  P  P PSP+    PP   P 
Sbjct: 183 PGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPA 242

Query: 597 PTSPP--PPVGSPPPPIQSPPPPVQ 619
           P  PP    V  PP P   P  P+Q
Sbjct: 243 PPIPPVIQYVAPPPVPPPQPIIPIQ 267

Length = 582

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 428 IVEPPKPSSPTPTTMPP--KQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
           +V      +P+P   P   K+ P P +  P     P     P  R A  PSP    S+P 
Sbjct: 373 LVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSP---ASAPT 429

Query: 486 PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPS 517
           P Q  P     P+  P P  S P       P 
Sbjct: 430 PEQQPPVARSAPLP-PSPQASAPRNVASGKPG 460

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 22/83 (26%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 530 PPPVSYPPPVRSSP-PPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP 588
           P P   P   + +P P  P     P    P  P   P   P P  +P P    P      
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARS-- 439

Query: 589 PPPIQSPPPTSPPPPVGSPPPPI 611
             P+   P  S P  V S  P +
Sbjct: 440 -APLPPSPQASAPRNVASGKPGV 461

Length = 620

>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 453 QSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSP 512
           Q  PP     V+  PP  +AP P P P      P Q     +P  ++ P     P P S 
Sbjct: 6   QQLPPGLAGLVANVPPA-AAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSA 64

Query: 513 MPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPP 552
           M           P P +PP      P     PP P+ +P 
Sbjct: 65  MTPHVVQQAPAQPAPAAPPAAGAALPEALEVPPPPAFTPN 104

Length = 306

>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 29/165 (17%), Positives = 48/165 (29%), Gaps = 31/165 (18%)

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPP- 538
           S SS   + +   PS    +      S    +  P   S PP+   P  + PP     P 
Sbjct: 82  SGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPP---QTPN 138

Query: 539 -------------------------VRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP-PPV 572
                                     +++   T +L   P   +P   +  P      P 
Sbjct: 139 GQQRIELPGNISDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPT 198

Query: 573 RSPPPSSPTPSPSPSPPPPIQSPPPTSP-PPPVGSPPPPIQSPPP 616
               P++  P+ +      +  PP TS  P    +    + S P 
Sbjct: 199 PPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARALSSAPA 243

Length = 327

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 47/189 (24%), Positives = 58/189 (30%), Gaps = 17/189 (8%)

Query: 345 PTECYPVVSKPVDCSKDECSWGGSPPSTPSAPTPK--PSTSTPAQEPKTPAPAPP---TP 399
           P    P  S     S D  +    P   PS  +    P       E K   P  P     
Sbjct: 386 PIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYE 445

Query: 400 SLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLV------- 452
            L  P   SPT PT     V      P + +    ++ T    PP     PL        
Sbjct: 446 DLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDD 505

Query: 453 ----QSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVS-YPPPVRSP 507
                SP P++P     P              P++    Q   QP P P+S Y       
Sbjct: 506 LKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPYTMYEDLK 565

Query: 508 PPPSPMPSP 516
           PP SP PSP
Sbjct: 566 PPTSPTPSP 574

Length = 576

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 45.8 bits (108), Expect = 6e-05
 Identities = 64/277 (23%), Positives = 88/277 (31%), Gaps = 19/277 (6%)

Query: 369 PPSTPSAPTPK-PSTSTPAQ-EPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
               P  P+P   +T  P Q  P T  P P  P+   PP A P           R + P 
Sbjct: 669 IGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPA 728

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPP 486
                 +P +  P    P    P   + PP ++P     P     AP   P P P +PP 
Sbjct: 729 AAPGRARPPAAAPGRARPPAAAPGRAR-PPAAAPGRARPPAAAPGAPT--PQPPPQAPPA 785

Query: 487 AQSTPQ----PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSP----PPVSYPPP 538
            Q  P+    P PPP + P  ++  P  +P     +   +            P +  P  
Sbjct: 786 PQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAA 845

Query: 539 VRSSPPPTPSLSPPPPVQSPPPPSP---PPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
           +       P+ SP          +P   PPVL P  V     S    + S     P +  
Sbjct: 846 LERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQPIQVMRQLGSVRAAAASTVTQAPTEYT 905

Query: 596 ---PPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
                  P  P   PP         V+S PP      
Sbjct: 906 GERRGVGPMHPTDIPPSKRAKTDAYVESQPPHGGQSH 942

Length = 991

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 6e-05
 Identities = 15/81 (18%), Positives = 18/81 (22%), Gaps = 3/81 (3%)

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPS 587
           PS            + P       PPP    P                PP +    P P 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTK---QAATTPSPPPAKASPPIPV 417

Query: 588 PPPPIQSPPPTSPPPPVGSPP 608
           P  P +  P          P 
Sbjct: 418 PAEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (109), Expect = 6e-05
 Identities = 20/78 (25%), Positives = 26/78 (33%)

Query: 432 PKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTP 491
           P               P P     PP +P   S P   ++A  PSP P+ +SPP      
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 492 QPSPPPVSYPPPVRSPPP 509
              P P        +PP 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.0 bits (110), Expect = 6e-05
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 16/98 (16%)

Query: 370 PSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIV 429
           P + +APT   + +  A      APA   P+ P+P   +   P                 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA---------------- 81

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPP 467
            PPKP++       P   P     + P ++       P
Sbjct: 82  APPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 475 PSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
              +P    PPP        P  +   PP  S   PS   +P +  P  S  P  P P  
Sbjct: 179 GGNIPGAIQPPP--------PSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSP 230

Query: 535 YPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP 569
             P    +  P P + P     +PPP  PP  + P
Sbjct: 231 AQPSAPPASIPAPPIPPVIQYVAPPPVPPPQPIIP 265

Length = 582

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 469 VRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPP---PSPMPSPSSPPPVYSP 525
           VR+    +P P+ S     ++     P P  +P P +   P   P+ +PSP+S  P    
Sbjct: 374 VRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPAS-APTPEQ 432

Query: 526 PPPSPPPVSYPPPVRSSPPPTPSLSPP 552
            PP       PP  ++S P   +   P
Sbjct: 433 QPPVARSAPLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 496 PPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPP-TPSLSPPPP 554
           P  +  P V+   P   +P P   P    P  P   P   P P  +  P   P ++   P
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAP 441

Query: 555 VQSPPPPSPPP 565
           +   P  S P 
Sbjct: 442 LPPSPQASAPR 452

Length = 620

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
           PP     +          P  P           PP++  P+P  +  PP  +P    PP 
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPK---AAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPT 180

Query: 603 PVGSPPPP 610
           PV    P 
Sbjct: 181 PVARADPR 188

Length = 418

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 33/130 (25%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 482 SSPPPAQSTPQPSPP-------PVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
           +S       P P+ P       P    PP    PPP P+  P   P     PP   P V 
Sbjct: 33  TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 92

Query: 535 YPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPP--PVRSPPPSSPTPSPSPSPPPPI 592
             P  +  P P P   P   V+  P     PV   P  P  +  P+ PT S + +     
Sbjct: 93  PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKP 152

Query: 593 QSPPPTSPPP 602
            +   + P  
Sbjct: 153 VTSVSSGPRA 162

Length = 246

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 583 SPSPSPPPPIQSPPPT-SPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           +P+P         P   + PPP  +PP P  +P  P  + P P+P PP
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPP 428

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 542 SPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
            P        P    +PPP + PP    PP     P++  P+P+P+PP       P +  
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPP---VPPAAPARPAAARPAPAPAPPAA---AAPPARS 437

Query: 602 PPVGSPP 608
               +  
Sbjct: 438 ADPAAAA 444

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 448 PPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP 507
           P P   +    +P   + PPP  + P P   P      PA + P P+P P   P      
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAP----ARPAAARPAPAPAP---PAA---A 431

Query: 508 PPPSPMPSPSSPP 520
            PP+    P++  
Sbjct: 432 APPARSADPAAAA 444

Length = 576

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 30/146 (20%), Positives = 44/146 (30%), Gaps = 17/146 (11%)

Query: 458 SSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPS 517
           SS  P   P   R     +  PS         + +  P  V+   P R   P S   S S
Sbjct: 146 SSLGP---PLQHRKRDAVTASPSSMIARNTPISDRLRPRSVT---PTRGRRPSSSPRSLS 199

Query: 518 SPPPVYSPPPP-SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPP 576
           +P  + SP        V  PPP  +    + ++S    +      + P        RS  
Sbjct: 200 NPTTLESPSNLQVTTDV--PPPYSNGTSRSSTMSSSANLSIISSLATP--------RSGE 249

Query: 577 PSSPTPSPSPSPPPPIQSPPPTSPPP 602
               TP+   S   P+          
Sbjct: 250 SFRSTPTSGSSSINPVSGLDEAEEDR 275

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 482 SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRS 541
           S+     +TP P+ P  + P      P  +  P+P+  P   +   PS   V        
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNS-QTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAP 225

Query: 542 SPPPTPSLSPPPPVQSPPPPSPP 564
           + P TP  + P P       +P 
Sbjct: 226 AAPATPDGAAPLPTDQAGVSTPA 248

Length = 331

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 45.4 bits (107), Expect = 8e-05
 Identities = 49/196 (25%), Positives = 64/196 (32%), Gaps = 7/196 (3%)

Query: 369 PPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPII 428
           PP+TP    P  S   P    + P+P P  PS   PP A     +   +  P    PP+ 
Sbjct: 349 PPTTPIPQLPNQSHKHPPH-LQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQ 407

Query: 429 VEPPKPSSPTPTTMPP-----KQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSS 483
           + P      +    PP     +  PP      P S         P    P  S       
Sbjct: 408 LMPQSQPLQSVPAQPPVLTQSQSLPPKASTH-PHSGLHSGPPQSPFAQHPFTSGGLPAIG 466

Query: 484 PPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSP 543
           PPP+  T  P+ PP +                 + P P   P      P+       S P
Sbjct: 467 PPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPP 526

Query: 544 PPTPSLSPPPPVQSPP 559
           PP  S SP P V + P
Sbjct: 527 PPPRSPSPEPTVVNTP 542

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.3 bits (108), Expect = 8e-05
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
           PPSP      PP     P  P+ +  P   +  P +  P      + + P ++   +  P
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPA---AALAAVPDAAAAAAAPP 447

Query: 587 SPPP-PIQSPPPTS 599
           +P   P  +    S
Sbjct: 448 APAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
           P P  +A       +P++PPPA + P P   P     P  + P P+P P  ++ PP  S 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAP---ARPAAARPAPAPAPPAAAAPPARSA 438

Query: 526 PPPSPP 531
            P +  
Sbjct: 439 DPAAAA 444

Length = 576

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 30/188 (15%), Positives = 47/188 (25%), Gaps = 3/188 (1%)

Query: 405  PVASPT-PPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPV 463
            PV  P      E       +V P++ E P  ++  P    P  E    V   P     P 
Sbjct: 846  PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQ 905

Query: 464  SYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVY 523
                 V     P  + +P +  P   T                   P    +        
Sbjct: 906  PEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAET 965

Query: 524  SPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP--PVLYPPPVRSPPPSSPT 581
            +    + P V   P           +     V+    P+      +      +P   +P 
Sbjct: 966  AEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPA 1025

Query: 582  PSPSPSPP 589
            P   P  P
Sbjct: 1026 PEYVPEAP 1033

Length = 1068

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 45.4 bits (107), Expect = 8e-05
 Identities = 19/92 (20%), Positives = 24/92 (26%), Gaps = 3/92 (3%)

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP---SPSPPPPIQSPPP 597
           S   P+  L+    V     P              P   P   P     +  PP+     
Sbjct: 352 SLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCG 411

Query: 598 TSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
                   +P  P  S  P    P PP P  P
Sbjct: 412 DPGLVSPYNPQSPGTSYGPEPVGPVPPQPTNP 443

Length = 663

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 9e-05
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 448 PPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP 507
           P P          P    P P R   P  P  +P + P    +P  +P P   PP  RS 
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKP-EAPGARPAELPSPASAPTPEQQPPVARSA 440

Query: 508 PPPSPMPSPSSPPPVYSPPP 527
           P P P P  S+P  V S  P
Sbjct: 441 PLP-PSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 45.5 bits (107), Expect = 9e-05
 Identities = 54/261 (20%), Positives = 90/261 (34%), Gaps = 13/261 (4%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
           G +  + P   +P   T++      +P PA  TP+  SP     +      +  P     
Sbjct: 476 GTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTP----I 531

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPP--SSPPPVSYPPPVRSAPPPSPMPSPSS 483
            I V     S PT TT  P    P + +  P   ++ P V+  P V ++   +      S
Sbjct: 532 VIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGS 591

Query: 484 PPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSP 543
            P +Q   QP  P  S+  P  +    +P+ + + P    +    +P   S       SP
Sbjct: 592 SPTSQ---QPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSP 648

Query: 544 PPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPP 603
            P P  +     Q   P +     YP  V          + SPS P   ++  PT     
Sbjct: 649 GPGPGTTS----QVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTG 704

Query: 604 VGSPPPPIQSPPPPVQSPPPP 624
             +     ++    + +   P
Sbjct: 705 GKANSTTKETSGSTLMASTSP 725

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 468 PVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPP 527
           P+ ++    P  +P+   P  +TP  S  P     P  +  P        S   V +   
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAAT 222

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSP 558
           P+P   +   P  ++P PT       P   P
Sbjct: 223 PAPAAPA--TPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 45.5 bits (107), Expect = 1e-04
 Identities = 27/97 (27%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 535 YPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS--PPPSSPTPSPSPSPPPPI 592
           + P V     P   ++P    Q P  P  P   Y  P +   P P    P    +P P  
Sbjct: 745 FTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQY 804

Query: 593 QSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           Q P     P P    P    +P P  Q P  P  P P
Sbjct: 805 QQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQP 841

Length = 1355

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 30/129 (23%), Positives = 43/129 (33%), Gaps = 7/129 (5%)

Query: 394 PAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQ 453
                P+      A+   P  ++        P   V+ P  +   P   P   +P P   
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 454 SPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPP-PSP 512
             P   P P     P++    P   P   +P P  S PQP+        PV +P P P  
Sbjct: 130 QQPAYQPQP---EQPLQQPVSPQVAP---APQPVHSAPQPAQQAFQPAEPVAAPQPEPVA 183

Query: 513 MPSPSSPPP 521
            P+P    P
Sbjct: 184 EPAPVMDKP 192

Length = 333

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 54/249 (21%), Positives = 74/249 (29%), Gaps = 19/249 (7%)

Query: 369 PPSTPSAPTPKPSTSTPAQEPK-TPAPAPP---TPSLPSPPVASPT---PPTWEWNRVPR 421
           PP  P+   P  +    AQ P      A P    P    PP A+P    PP     R   
Sbjct: 697 PPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756

Query: 422 HKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSP---PPSSPPPVSYPPPVRSAPPPSPM 478
               P    PP  +   PT  PP Q PP   Q P   P   PPP + P  ++  P  +P 
Sbjct: 757 PAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPG 816

Query: 479 PSPSSPPPAQSTPQPSP----PPVSYPPPVRSPPPPSPMPSPSSPPPVYSPP-----PPS 529
               +    +           P +  P  +       P PSP S             PP 
Sbjct: 817 QQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPV 876

Query: 530 PPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPP 589
             P+     + S      S     P +          ++P  +     +         PP
Sbjct: 877 LQPIQVMRQLGSVRAAAASTVTQAPTEYTGERRGVGPMHPTDIPPSKRAKTDAYVESQPP 936

Query: 590 PPIQSPPPT 598
              QS   +
Sbjct: 937 HGGQSHSFS 945

Length = 991

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 17/75 (22%), Positives = 27/75 (36%)

Query: 470 RSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPS 529
             +   +     +  P    +P P+P   S P   ++   PSP P+ +SPP      P  
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTE 423

Query: 530 PPPVSYPPPVRSSPP 544
           P P        + P 
Sbjct: 424 PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 14/101 (13%), Positives = 22/101 (21%), Gaps = 20/101 (19%)

Query: 391 TPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPP 450
               AP   +  +   AS                 P    P  P+   P    P   P P
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAA------------APAAKAPAAPAPAPPAAAAPAAPPKP 86

Query: 451 LVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTP 491
              +             P       +     ++    + TP
Sbjct: 87  AAAAAAA--------AAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 12/95 (12%), Positives = 20/95 (21%), Gaps = 17/95 (17%)

Query: 374 SAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPK 433
              T  P+ +  A      APA    +      A   P                      
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA-----------------AAP 80

Query: 434 PSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPP 468
            + P P         P    +   ++ P  +    
Sbjct: 81  AAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 228 LQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNM 287
           L+ + L  N+L+  +P     G   NL V D+  N      P++F+ L ++  LD+S N 
Sbjct: 2   LKSLDLSNNRLTV-IPDGAFKGL-PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 288 L 288
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 39/157 (24%), Positives = 43/157 (27%), Gaps = 2/157 (1%)

Query: 475 PSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
           P   P  S  PP     +               P     P  +    V   P P+     
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKP 569

Query: 535 YPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP-SPPPPIQ 593
              P  S  P  P     P     P     P     P R   P  P     P SP  P  
Sbjct: 570 SKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPES 629

Query: 594 SPPPTSPPPPV-GSPPPPIQSPPPPVQSPPPPSPPPP 629
              P  PPPP   S P   + P       PP SP PP
Sbjct: 630 PKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPP 666

Length = 943

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 25/71 (35%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
            P      PP    +P +P  A +    +  P +  P       P    + ++PP   + 
Sbjct: 393 SPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAA 452

Query: 526 PPPSPPPVSYP 536
           P P+    S+ 
Sbjct: 453 PQPAVRLNSFE 463

Length = 598

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 28/114 (24%), Positives = 38/114 (33%), Gaps = 12/114 (10%)

Query: 378 PKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTP---PTWEWNRVPRHKVPPIIVEPPKP 434
           P   T  PA      A     P  P+PP  +P P    T+  +   RH+        PKP
Sbjct: 152 PAGGTYIPAGGTYILASGTYIP--PNPPREAPAPGLPKTFTSSHGHRHR------HAPKP 203

Query: 435 SSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
           +   PT   P Q+P     +  P   P      P +   P +P   P       
Sbjct: 204 T-QQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGH 256

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 33/106 (31%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
           Q   +    P +  PP  S  P  P  S S  P   S P    P VS+ P +        
Sbjct: 174 QIGGRGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLP------- 226

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQ 593
               P P Q   PP+  P    PPV       P P P P P  PIQ
Sbjct: 227 ---GPSPAQPSAPPASIPAPPIPPVIQYVA--PPPVPPPQPIIPIQ 267

Length = 582

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 23/95 (24%), Positives = 27/95 (28%), Gaps = 5/95 (5%)

Query: 535 YPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQS 594
                  +P       P   +Q  P P    VL P     P            P P    
Sbjct: 109 VLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIK-----PGPAPVE 163

Query: 595 PPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
            P  S    V +   P+    PP   PPPP  P P
Sbjct: 164 EPVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQP 198

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 512 PMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPP 571
            +P+ ++  P   PPPPS    +  P   + PPP P  +PP P    P  +PPP    P 
Sbjct: 32  ALPATANADPAPPPPPPSTAAAAPAPA--APPPPPPPAAPPAPQPDDPNAAPPPPPADPN 89

Query: 572 VRSPPPSSPTPSPSPSPPP 590
              PPP  P   P P+P P
Sbjct: 90  APPPPPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 23/94 (24%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 455 PPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMP 514
             PS     +    V +AP     P+    P        S P  S            P+P
Sbjct: 354 TAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARS------PMTAYPPVP 407

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPS 548
                P + SP  P  P  SY P      PP P+
Sbjct: 408 QFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPT 441

Length = 663

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSP---PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPS 583
             + PP+       S  P  P  +P   P  V  P  P P P     P  +P PS+ T  
Sbjct: 171 TLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSP 230

Query: 584 PSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           PS + P P  +           +   P    P   ++PP  + P P
Sbjct: 231 PSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAP 276

Length = 401

>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1)

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 46/227 (20%), Positives = 60/227 (26%), Gaps = 19/227 (8%)

Query: 368 SPPSTPSAPTPKPSTSTPAQ-----EPKTPAPAPPTP------SLPSPPVASPTPPTWEW 416
           + P   +          P+Q      P+T                 +     P PP    
Sbjct: 486 AKPERAAPEQLFKDLMLPSQMLDRKSPRTHTVNDRGQCFGDPDISTAAMFIIPKPPD--- 542

Query: 417 NRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPS 476
           +                P +P P   P + E   LV +P              R+     
Sbjct: 543 SFANVAAAALYNSPFCMPQTPQPQDAPEQTEALSLVVTPKKKRHKVTDTRITPRTVSRIL 602

Query: 477 PMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYP 536
            +     P  A  T      P S    +   PPP   P P         P      V   
Sbjct: 603 ALRDAVGP--AAGTHHQPLHPSSLSASMGFHPPPFRHPFPLPLTVAIPNPSLHQSEVFMG 660

Query: 537 PPVRSSPPPTPSLSPPP-PVQSPPPPSPPPVLYP--PPVRSPPPSSP 580
            P +S     PS SPP     SP  P P   L+P        P SSP
Sbjct: 661 YPFQSPHLGAPSGSPPGKDRDSPDLPRPTTSLHPKLLSAHHHPGSSP 707

The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm. This family contains an atypical homeobox domain. Length = 908

>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 60/280 (21%), Positives = 82/280 (29%), Gaps = 19/280 (6%)

Query: 353 SKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPP 412
            +P   S    S      S+  + +   S+S+ ++E + P  A P    P PP  +    
Sbjct: 391 PEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPRTASPE---PEPPSTNKWQL 447

Query: 413 TWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSS--PPPVSYPPPVR 470
               N+V  HKV P   E    + P    M  + +         P S  PPP S     R
Sbjct: 448 DNWLNKVNPHKVSP--AESVSSNPPIKQPMEKEGKVKSSGSQYHPESKEPPPKSSSKEKR 505

Query: 471 SAPPPSPMPSP---SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPP 527
                   P         PAQS   P    V    P +     +        P       
Sbjct: 506 RPRTAQKGPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGDERTGLRPESEPGTL 565

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPS 587
           P    V  PP    +       S  P  +  P  S PP       R     S     S  
Sbjct: 566 PYGSSVQTPPDRPKAATKG---SRKPSPRKEPKSSVPP---AAEKRKYKSPSKIVPKSRE 619

Query: 588 PPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
                ++   +S  P   S PP  QSP     S    +  
Sbjct: 620 FI---ETDSSSSDSPEDESLPPSSQSPGNTESSKESCASL 656

This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 29/131 (22%), Positives = 40/131 (30%), Gaps = 6/131 (4%)

Query: 364 SWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHK 423
           +    PP+   A    P+ + PAQ    PA  PP      P    P          P   
Sbjct: 677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAA- 735

Query: 424 VPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSS 483
               +  PP+P  P      P Q PPP     P ++P      PP         M    +
Sbjct: 736 -DDPVPLPPEPDDPPDPAGAPAQPPPPPA-PAPAAAPAA---APPPSPPSEEEEMAEDDA 790

Query: 484 PPPAQSTPQPS 494
           P       + +
Sbjct: 791 PSMDDEDRRDA 801

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPP 503
           P      +  +  P++P P   P P  +   PS  P         S P     P    P 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSA-PKTKQAATTPSPPPAKASPPIPVPA 419

Query: 504 VRSPPPPSPMPSPSSPPPVY 523
             + P P+P  + ++ PP  
Sbjct: 420 EPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 30/79 (37%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 434 PSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQP 493
            +S T  T PP Q+ PP     PP   P  + PPP    PPP      SS  PAQ     
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPP-TATQASSNAPAQIPADS 574

Query: 494 SPPPVSYPPPVRSPPPPSP 512
           SPPP     P  SP   S 
Sbjct: 575 SPPPPIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 23/63 (36%)

Query: 567 LYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
           L P    S   ++  P+     P P   P P  P  P         SPPP   SPP P P
Sbjct: 359 LLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVP 418

Query: 627 PPP 629
             P
Sbjct: 419 AEP 421

Length = 620

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 43.8 bits (102), Expect = 2e-04
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 432 PKPSSPTPTTMPPKQEPPPLVQSPPPS---SPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
           P          P K    P   + PP+   + P  +   P ++A PP+   +P +   A 
Sbjct: 211 PSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAP 270

Query: 489 STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPS 548
                +PP  +  PP ++  PP+   +  +          + P  +  PP +++ PP  +
Sbjct: 271 PAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKA 330

Query: 549 LSPPPPVQSPPP 560
            +PP    + PP
Sbjct: 331 ATPPAK-AAAPP 341

Length = 357

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 23/109 (21%), Positives = 29/109 (26%), Gaps = 5/109 (4%)

Query: 481 PSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
           P  P P         P  +   P  + PP     +  +        P   P    PP   
Sbjct: 42  PLVPKPGDRDEPDMMPAATQALP--TQPPEGAAEAVRAGDA---AAPSLDPATVAPPNTP 96

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPP 589
             P P P   P P     P P P P        +P P         + P
Sbjct: 97  VEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 3/71 (4%)

Query: 524 SPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPS 583
                  PP     P   +    P  +   P    P  +   V       + PP+     
Sbjct: 394 PGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA--- 450

Query: 584 PSPSPPPPIQS 594
            +P P   + S
Sbjct: 451 AAPQPAVRLNS 461

Length = 598

>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 55/266 (20%), Positives = 69/266 (25%), Gaps = 19/266 (7%)

Query: 367 GSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
                TP  P  KP    P       +        P P       P  +     +H + P
Sbjct: 410 EPTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGPLHD-----QHSMAP 464

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPP-----PSPMPSP 481
             V    P  P     P  Q P  +    P  +P P    P VR         P    +P
Sbjct: 465 CPVAQLPP-GPLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAP 523

Query: 482 SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRS 541
             P P    P P  P V+   PV   PP   M  P     +        P    P P R 
Sbjct: 524 VMPQPMPVEPVPV-PTVALERPVCPAPPLIAMQGPGETSGIVRVRERWRPAPWTPNPPR- 581

Query: 542 SPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
                 S S                 Y   V   PP     SP      P++      P 
Sbjct: 582 ------SPSQMSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPG 635

Query: 602 PPVGSPPPPIQSPPPPVQSPPPPSPP 627
            P       +++   P   P     P
Sbjct: 636 SPFSQVADVMRAGGVPAMQPQYFDLP 661

Length = 935

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 44.4 bits (104), Expect = 2e-04
 Identities = 43/204 (21%), Positives = 67/204 (32%), Gaps = 12/204 (5%)

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPV----SYPPPVRSAPPPSPMPSPSSP 484
           VEP K ++   T   P     P V +  P+S  P     S  P   S    +   +P++ 
Sbjct: 441 VEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNAT 500

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP 544
            P  +   P+    +  P  +         SP+      +    SPP  +   P  +SP 
Sbjct: 501 SPTPAVTTPN----ATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQ 556

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP-- 602
            T   SP     +P   S P VL          +  +P+      P      P S     
Sbjct: 557 VT-EESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTST 615

Query: 603 -PVGSPPPPIQSPPPPVQSPPPPS 625
            P+ +   P        ++P  PS
Sbjct: 616 TPLLTSAHPTGGENITEETPSVPS 639

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 5/75 (6%)

Query: 555 VQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSP 614
               PP   P  L     R         S   +      +P P     P    PP   +P
Sbjct: 351 AAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPD--FDPRPRGPP---AP 405

Query: 615 PPPVQSPPPPSPPPP 629
            P   +  PP   P 
Sbjct: 406 EPARSAEAPPLVAPA 420

Length = 504

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 29/72 (40%)

Query: 461 PPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPP 520
           P  +   P    PPPS   +  +P      P P+ PP   P    + PPP P    + PP
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP 93

Query: 521 PVYSPPPPSPPP 532
           P   P  P PP 
Sbjct: 94  PPVDPNAPPPPA 105

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 536 PPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSP-TPSPSPSPPPPIQS 594
           PP    +P P P + P  PVQ   P +P  +  P     P P+S  TP      P     
Sbjct: 20  PPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAP---AQ 76

Query: 595 PPPTSPPPPVGSPPPPIQSPPPPVQSPP 622
           P P +PP    + P  ++ PPPP  +P 
Sbjct: 77  PAPAAPPAAGAALPEALEVPPPPAFTPN 104

Length = 306

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 453 QSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSP 512
            +  P+   PV   P     P  +  P+P+  P   +   PS   V         P    
Sbjct: 172 PATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVD--TAATPAPAAPA 229

Query: 513 MPSPSSPPPVYSPPPPSPP 531
            P  ++P P       +P 
Sbjct: 230 TPDGAAPLPTDQAGVSTPA 248

Length = 331

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 24/101 (23%), Positives = 31/101 (30%), Gaps = 11/101 (10%)

Query: 464 SYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVY 523
           S   P R     + +   ++P    + P     P        S P  SPM          
Sbjct: 352 SLTAPSRVLAAAAKVAVIAAPQTH-TGPADRQRPQRPDGIPYSVPARSPM---------- 400

Query: 524 SPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
           +  PP P     P  V    P +P  S  P    P PP P 
Sbjct: 401 TAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPT 441

Length = 663

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 15/111 (13%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP--PPPSPMPSPSSPPPVY 523
            P   +A  P+   + + P P    PQ + P     P   +P  P PS  PSP  P   +
Sbjct: 380 APSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVP---W 436

Query: 524 SPPPPSPPPVSYPP----------PVRSSPPPTPSLSPPPPVQSPPPPSPP 564
              PP+PP    PP          PV  +P    S S  PP    P  +  
Sbjct: 437 DDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 26/74 (35%)

Query: 524 SPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPS 583
           S   P+    S+     SS   +   S   P      PS   +L+ P +   P  S    
Sbjct: 2   SSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSP 61

Query: 584 PSPSPPPPIQSPPP 597
           PS + PP   +  P
Sbjct: 62  PSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 4/76 (5%)

Query: 554 PVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQS 613
           P     P  P   +              P  + + P P+  P  T+ P    +P P    
Sbjct: 106 PYNEQTPQVPRSTV----QIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQ 161

Query: 614 PPPPVQSPPPPSPPPP 629
           P  PV           
Sbjct: 162 PAAPVTQAVEAPKVEA 177

Length = 256

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 401 LPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSP 460
           LPS  ++         N        P     P P+   P+   PK +      SPPP+  
Sbjct: 360 LPSAFISEIA------NASAPANPTPAPNPSPPPAPIQPS--APKTKQAATTPSPPPAKA 411

Query: 461 PPVSYPPPVRSAPPPSPMPSPSSPPP 486
            P    P   + P P+P  + ++ PP
Sbjct: 412 SPPIPVPAEPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 4/103 (3%)

Query: 417 NRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPS 476
                            P++ +    P  +  P LV+     +          R+A P +
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQ--REQLVARAAAPAA 110

Query: 477 PMPSPSSPPPAQSTPQPSPPPVSYPPP--VRSPPPPSPMPSPS 517
           P     + P  ++  + +   ++       R   P     + +
Sbjct: 111 PEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVA 153

Length = 484

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 37/224 (16%), Positives = 47/224 (20%), Gaps = 55/224 (24%)

Query: 438 TPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPP 497
            P      + PPP  +SPP S    +        +   SP P PS       T   +   
Sbjct: 527 RPRIGFINKSPPP--KSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFAN 584

Query: 498 VSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPP---- 553
                            S   P    S  P + P     P   +   P+ SL        
Sbjct: 585 TVRLTDNMRGGNGVG--SSVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAARNAG 642

Query: 554 ------------------PVQSPPPPSPPPVLYPPPVRSPPPSS---------------- 579
                              +               PV+   P                  
Sbjct: 643 ASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGTESAS 702

Query: 580 -------------PTPSPSPSPPPPIQSPPPTSPPPPVGSPPPP 610
                         TP   P  P P  S    S   P GS   P
Sbjct: 703 TTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDSASSPGGSGGKP 746

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 18/78 (23%), Positives = 25/78 (32%)

Query: 552 PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPI 611
           P P     P   P      P + P  ++       +  P +       P  PV   P P+
Sbjct: 45  PKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPV 104

Query: 612 QSPPPPVQSPPPPSPPPP 629
           + P P     P P P P 
Sbjct: 105 EPPKPKPVEKPKPKPKPQ 122

Length = 226

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (104), Expect = 3e-04
 Identities = 15/92 (16%), Positives = 22/92 (23%), Gaps = 17/92 (18%)

Query: 545 PTP--------SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPP 596
           PTP           P P      PP              P +    +   +      +  
Sbjct: 378 PTPDEALRRLQEGPPSPGGGGGGPPGGGG---------APGAPAAAAAPGAAAAAPAAGG 428

Query: 597 PTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
           P +    V        +PP P  +P P     
Sbjct: 429 PAAALAAVPDAAAAAAAPPAPAAAPQPAVRLN 460

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 8/71 (11%), Positives = 15/71 (21%)

Query: 472 APPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPP 531
            P P                  +           +   P+   +        +  PP+P 
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 532 PVSYPPPVRSS 542
               P    +S
Sbjct: 451 AAPQPAVRLNS 461

Length = 598

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 585 SPSPPPPIQ---SPPPTSPPPPVGSPPPPIQSPPPPVQSPP-PPSPPPP 629
           +P+PP       +P   + PPP  +PP P  +P  P  + P P   PP 
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPA 429

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 463 VSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPV 522
              PP      P    P+   P  A   P  +P   +   P  +P PP+   +P +    
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAA-AAPPARSAD 439

Query: 523 YSPPPPSPP 531
            +    +  
Sbjct: 440 PAAAASAGD 448

Length = 576

>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator)

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 46/234 (19%), Positives = 62/234 (26%), Gaps = 17/234 (7%)

Query: 381 STSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWN-RVPRHKVPPIIVEPPKPSSPTP 439
             +     P+  +P  P+PS   P  +      W  + + PR +     + P  PSS  P
Sbjct: 215 GFTPHPSLPQPQSPLKPSPSSARPQQSESFSDVWPASTQSPREETSAEPLAPASPSSRRP 274

Query: 440 TTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVS 499
           +T           Q    S          V+S  P S    PS  P   +T     PP +
Sbjct: 275 STAQ-------EEQIACSSPQAEPEQG--VQSYVPQSSDSRPSCFPAPSTTQPTFLPPNT 325

Query: 500 YPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPP 559
                R   P    P       V              P  R S       S  P + S  
Sbjct: 326 NKKAKRDRRPQMVTPKQEGGAAVSQNHDGGTV---RAPRGRPSGSGQSPPSNSPLLSSLA 382

Query: 560 PPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQS 613
                    P      PP+        +     Q P P S   P         S
Sbjct: 383 DTPSGAAHQPAS--LLPPAVVQQQLEDA--SDKQPPTPGSSLVPQPDEQELGPS 432

This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 33/227 (14%), Positives = 64/227 (28%), Gaps = 7/227 (3%)

Query: 372 TPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVE- 430
             S  T   +   P   P   AP     S  SP   +      E  +  R K+P +  + 
Sbjct: 3   LISINTATKTAVQPEATPSAGAPTGLQQSSESPTQRASHSLASEGKK-NRKKMPKVFQKS 61

Query: 431 --PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
             P +  +  P  + P    P   + P       +        AP  S  PS      ++
Sbjct: 62  SAPRQIQAAPPQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESS--PSARRLTRSE 119

Query: 489 STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPS 548
              +     ++  P V+       +          S  PP          + ++   + +
Sbjct: 120 GVARHEMEDLAGRPVVKPDADRQ-LRQDILNKSSSSRRPPVSKEEGTSSKMPATALASAA 178

Query: 549 LSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
           L     ++     +         +     + P   P  +P  P+ + 
Sbjct: 179 LFKDDEIRQEVDAARSDQASQSRLSRSRGNPPAIPPDAAPRQPMLTR 225

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 29/108 (26%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 443 PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPP 502
             ++EP P  ++      P  +  P  R       +P+   PP  + T +P P PV    
Sbjct: 110 LGEEEPAPQEETVAD---PIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVE--E 164

Query: 503 PVRSPPPPSPM---PSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
           PV S     P    P     PP   PPPP  P  S     R S     
Sbjct: 165 PVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRRSRIKRT 212

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 18/98 (18%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
              P +TP+   P  +T T +Q P       P        V +P+               
Sbjct: 169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN------------ 216

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQ---SPPPSSP 460
              V+     +P     P    P P  Q   S P + P
Sbjct: 217 ---VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function unknown]

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 22/134 (16%), Positives = 29/134 (21%), Gaps = 8/134 (5%)

Query: 402 PSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPP 461
                 +P  P          K P   +  P         M     P P   +      P
Sbjct: 403 VVSEAWAPVSPVTGRLDAFEWKAPTGQLAHPI-EDRDEAIM----APLPEAPAKSAIEEP 457

Query: 462 PVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPP 521
                 PV  A       +  S       P P   P +YP   ++  P      P   P 
Sbjct: 458 ADE-LEPVAEAAETEGKGTDRSARAV--KPIPVIAPAAYPASAKTAEPAGFFGRPPDDPG 514

Query: 522 VYSPPPPSPPPVSY 535
           V             
Sbjct: 515 VRRDGAAEKRATRL 528

Length = 531

>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPV----RSAPPPSPMPSPSSPPP 486
             K S  T  +   K  P     +P  +S P V            +  PS   SPSS   
Sbjct: 104 KAKDSQFTVVSQAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQ 163

Query: 487 AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPP 520
                 PS  P S     +SP   S +   +S  
Sbjct: 164 QSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSG 197

Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins. Length = 559

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 464 SYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPP 521
           +   P  +AP PS M           T QP+    +  PP   P PP+  P P +   
Sbjct: 268 AAAQPATAAPAPSRMTDT--NDSKSVTSQPAAAAAAPAPP---PNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|220840 pfam10667, DUF2486, Protein of unknown function (DUF2486)

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 9/153 (5%)

Query: 419 VPRHKVPPIIVEPPKPSS------PTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSA 472
           VP H VP                 P  T             +P  ++    + P  V   
Sbjct: 17  VPGHPVPARSSSADAAGPHDDAAEPVLTDQIVPGAEQAASAAPVHAAREATADPEFVAVE 76

Query: 473 PPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPV-RSPPPPSPMPSPSSPPPVYSPPPPSPP 531
           P P+P     + P    T  P+ P  +      R+    +P+PS  +     +PP  +  
Sbjct: 77  PVPTPHVPAVALPGD--TDAPAEPGAAPHVVAERAAAMQAPLPSALAADDPQAPPAGATA 134

Query: 532 PVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
             +      ++PP     SPP   Q+    +  
Sbjct: 135 ADAGDAAPDATPPAAGDASPPAAAQAAASAAAA 167

This family is made up of members from various Burkholderia spp. The function is unknown. Length = 245

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 14/78 (17%), Positives = 19/78 (24%)

Query: 420 PRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP 479
           P   +  I       +        P   P          +    S PP   S P P P  
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 480 SPSSPPPAQSTPQPSPPP 497
                P   +    +PP 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 3/99 (3%)

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPP---PPSPPPVLYPPPVRSPPPSSPTPSP 584
                    P   +   P  +L P P         P +P P  Y   ++  P     P  
Sbjct: 108 KVLGEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVD 167

Query: 585 SPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPP 623
           S +   P    P T   PP   PPPP+   P  +     
Sbjct: 168 SMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRR 206

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 3/87 (3%)

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
           ++  P  + +P  PV + P  S  P +   P    P   P  +   +P         T  
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAP---APAVDPQQNAVVAPSQANVDTAATPA 224

Query: 601 PPPVGSPPPPIQSPPPPVQSPPPPSPP 627
           P    +P      P        P + P
Sbjct: 225 PAAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 513 MPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSP-PPPVQSPPPPSPPPVLYPPP 571
           + +PS      +       P ++  P     P  P   P   P +SP    PP   +   
Sbjct: 353 LTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGD 412

Query: 572 VRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
                P +P    +   P P+   PP    P
Sbjct: 413 PGLVSPYNPQSPGTSYGPEPVGPVPPQPTNP 443

Length = 663

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 1/107 (0%)

Query: 457 PSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTP-QPSPPPVSYPPPVRSPPPPSPMPS 515
             + PP+       S  P  P+ +P   P     P  P P P +   P  +P P +    
Sbjct: 171 TLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSP 230

Query: 516 PSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPS 562
           PS+  P  S    +P   + P    +  PPTP     PP  + P P 
Sbjct: 231 PSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPE 277

Length = 401

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
           S+P             S    SPP    P P R  P +S         P P  S P  SP
Sbjct: 4   SNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSP--SP 61

Query: 601 PPPVGSPPPPIQSP 614
           P     P    Q+P
Sbjct: 62  PSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 22/58 (37%), Positives = 28/58 (48%)

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
           PP  P    PP  QSP P  P P     P   P P++  P+P+ +PPP     PP +P
Sbjct: 84  PPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRAP 141

Length = 141

>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 33/150 (22%), Positives = 39/150 (26%), Gaps = 9/150 (6%)

Query: 482 SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYS----PPPPSPPPVSYPP 537
           S  P   S+        S   P  SP    P           S        S  P +   
Sbjct: 262 SLDPTETSSEDGYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFD 321

Query: 538 PVRSSPPPTPSLSPPPPVQ-SPPPPSPPPVLYPPPVRSPPPSSPTPSPSPS--PPPPIQS 594
              SS       SP      + PP S         +     S   P  + S    P  +S
Sbjct: 322 KAASSGTKDSLWSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTTGSGKGEPASES 381

Query: 595 PPPTSPPPPVGSPPPPIQSPPPPVQSPPPP 624
            P TSPPPP       I        S   P
Sbjct: 382 TPSTSPPPP--GLADDIVRAIFATSSRSAP 409

This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 29/155 (18%), Positives = 40/155 (25%), Gaps = 1/155 (0%)

Query: 436 SPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSP 495
           S             P  +S    +    +      +    S    P  P PA   P P  
Sbjct: 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPE-PLPASLPPPPVR 317

Query: 496 PPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPV 555
            P    P      P     + +  P   +    S    S       S  P  SL+     
Sbjct: 318 RPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSF 377

Query: 556 QSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPP 590
                   PP+     +R  P  S T +P P   P
Sbjct: 378 LEDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIP 412

Length = 418

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 43.1 bits (101), Expect = 5e-04
 Identities = 54/242 (22%), Positives = 66/242 (27%), Gaps = 21/242 (8%)

Query: 402 PSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPP 461
           P  P AS  PP    ++           E  K S        P +     V   P  +  
Sbjct: 511 PEGPEASGLPPKAPGDKEGEEGEH----EDSKESDEPKEGGKPGETKEGEVGKKPGPAKE 566

Query: 462 PVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPS--PSSP 519
                 P  S  P  P        P    P+    P S   P R   P  P     P SP
Sbjct: 567 HKPSKIPTLSKKPEFPKDPKHPKDP--EEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSP 624

Query: 520 PPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV---LYPPPVRSPP 576
               SP  P  PP    P     P     +  P P +SP PP  P      Y   + +  
Sbjct: 625 KRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAA 684

Query: 577 PSSPTPSP-----SPSPPPPIQSPPPTSPPPPVGSPPPPI-----QSPPPPVQSPPPPSP 626
            S  T +      S         P     P     P PP      + P  P+  P    P
Sbjct: 685 KSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQP 744

Query: 627 PP 628
             
Sbjct: 745 DD 746

Length = 943

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 553 PPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPI---QSPPPTSPPPPVGSPPP 609
           P   +   P+ PP      VR+   ++P+  P+   PP       P P  PP P     P
Sbjct: 57  PAA-TQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKP 115

Query: 610 PIQSPPPPVQSPPPPSPPPP 629
             +  P      PP   P P
Sbjct: 116 KPKPKPQQKVEAPPAPKPEP 135

Length = 226

>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 49/204 (24%), Positives = 55/204 (26%), Gaps = 20/204 (9%)

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPP 503
           P  E  P + S    SP P         A P +     SS P         P        
Sbjct: 72  PSPERSPALSSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSKRPRSDS 131

Query: 504 VRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPP---------- 553
           + S   P+  P    P P  S         + P P  S  PP       P          
Sbjct: 132 ISSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSD 191

Query: 554 PVQSPPPPSPPPVLYPPPVRSPPPSSPTP----------SPSPSPPPPIQSPPPTSPPPP 603
             Q P P  P     P  V  P P   T           S SPS       PPP S   P
Sbjct: 192 GFQLPAPKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAP 251

Query: 604 VGSPPPPIQSPPPPVQSPPPPSPP 627
             S P  I     P+    PP   
Sbjct: 252 DDSTPLDISLFNFPLIPLLPPEAL 275

Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 567 LYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP---PPPIQSPPPPVQSPPP 623
           + P P  SP       +P P  P P + P P  P  P   P   P P  +P P  Q P  
Sbjct: 380 VAPSPAGSPD--VKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVA 437

Query: 624 PSPPPP 629
            S P P
Sbjct: 438 RSAPLP 443

Length = 620

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 551 PPPPVQSPPPPSPPPVL-YPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP 607
           PP PV    PP P  +    PP   P PS+P  SP P+P  P  +  P S  PP+ SP
Sbjct: 146 PPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSP 203

Length = 274

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 24/140 (17%), Positives = 35/140 (25%), Gaps = 10/140 (7%)

Query: 382 TSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTT 441
           +S           A            +P        R+    V P     P  SSP   +
Sbjct: 146 SSLGPPLQHRKRDAVTASPSSMIARNTPISD-----RLRPRSVTPTRGRRP-SSSPRSLS 199

Query: 442 MPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYP 501
            P   E P  +Q      PP  +      S        +  S   + +TP+      S P
Sbjct: 200 NPTTLESPSNLQVTTDVPPPYSN----GTSRSSTMSSSANLSIISSLATPRSGESFRSTP 255

Query: 502 PPVRSPPPPSPMPSPSSPPP 521
               S   P      +    
Sbjct: 256 TSGSSSINPVSGLDEAEEDR 275

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 15/72 (20%), Positives = 22/72 (30%)

Query: 474 PPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPV 533
             +P     S   + S+      P S   P      PS      +P  +  P   SP P 
Sbjct: 3   SSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPP 62

Query: 534 SYPPPVRSSPPP 545
           S   P  ++   
Sbjct: 63  SVTLPPAATTQT 74

Length = 590

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 503 PVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPS 562
           P+  P PP P+  P++  P  + P P P      PP  ++  P P+ +PPP     PP +
Sbjct: 81  PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRA 140

Query: 563 P 563
           P
Sbjct: 141 P 141

Length = 141

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 575 PPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPP--PPIQSPPPPVQSPPPPSPPPP 629
           PP ++PT +P+P+P PP       S  P        P  +S        P  S P  
Sbjct: 86  PPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSS 142

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 54/234 (23%), Positives = 69/234 (29%), Gaps = 67/234 (28%)

Query: 458 SSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPS 517
           S  PP +  P   + PPP P   P S P      +      + P  V        +P+ +
Sbjct: 427 SRQPPGAPAPRRDNDPPPPPRARPGSTPACARRARAQRARDAGPEYVDPLGALRRLPAGA 486

Query: 518 SPPPVYSPPPPSPPPVSY------PPPVRSSPPPTPSLSPP--PPVQSPPPPSPPPVLYP 569
           +PPP   P     P   Y      PP +      T +L P   PP  +PP     P L P
Sbjct: 487 APPP--EPAAAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDPYLEP 544

Query: 570 PPVRSPP--------PSSPTPSPSPSPPPPIQS--------------------------- 594
              R            S P  +P+P   P  +                            
Sbjct: 545 DDDRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEIPTPRVYQNPLPRPME 604

Query: 595 --------PPPTSPPPPVGSP-----------PPPIQSPPPPVQSPPPPSPPPP 629
                     PTSP     +P           PPP    PPP    P  SP PP
Sbjct: 605 GAGEPPDLDAPTSPWVEEENPIYGWGDSPLFSPPPAARFPPP---DPALSPEPP 655

Length = 694

>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein (LMP2) protein

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 21/87 (24%), Positives = 23/87 (26%), Gaps = 15/87 (17%)

Query: 558 PPPPSPP--PVLYPPPVRSPPPSSPTPSP-SPSPPPPIQSPPPTSPPPPVGSPPPPIQSP 614
              P     P           PSS   S   P PP P     P+  PPP G         
Sbjct: 11  AGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGSNGDRHGG 70

Query: 615 PPPVQSPPPP------------SPPPP 629
             P+    P              PPPP
Sbjct: 71  YQPLGQQDPSLYAGLGQNGGGGLPPPP 97

This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus is a human Gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear. Length = 489

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 39/160 (24%), Positives = 56/160 (35%), Gaps = 33/160 (20%)

Query: 132 HRLEEFDVSNNRLVGP--FPTV-ALTWKRNLY-LDLRFNNFEGELPPELFQ-----TGLD 182
             LE+  +  NRL G        AL   R+L  L+L  N         L +       L+
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 183 IIFLNHNWFR--GSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQ--- 237
           ++ LN+N     G+    + E+LA    L   N         G    L   +L  N    
Sbjct: 197 VLDLNNNGLTDEGAS--ALAETLASLKSLEVLNLGDNNLTDAG-AAALASALLSPNISLL 253

Query: 238 ---LSGCLPSEIG-SG---------EYKNLTVFDIRSNKF 264
              LS     +I   G         E ++L   D+R NKF
Sbjct: 254 TLSLSCN---DITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 5/120 (4%)

Query: 386 AQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPK 445
                  AP       P PP   P PPT      P     P   +P +   P      PK
Sbjct: 44  LAAKVLEAPTEEPQPEPEPPEEQPKPPT-----EPETPPEPTPPKPKEKPKPEKKPKKPK 98

Query: 446 QEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVR 505
            +P P  +  P   P P    PP ++A      P+  + PP+ ++   +    S      
Sbjct: 99  PKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSG 158

Length = 244

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 30/117 (25%), Positives = 35/117 (29%), Gaps = 5/117 (4%)

Query: 506 SPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPP 565
               P+  P P   PP   P PP+ P     PP  + P P     P    +  P P P P
Sbjct: 48  VLEAPTEEPQPEPEPPEEQPKPPTEPET---PPEPTPPKPKEKPKPEKKPK-KPKPKPKP 103

Query: 566 VLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPP 622
              P P   P P    P    +   P     P  PP    S       P     S  
Sbjct: 104 KPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAA-SASGAATGPSASYLSGL 159

Length = 244

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 14/65 (21%), Positives = 25/65 (38%)

Query: 475 PSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
           P+      +P P+++  +P+P P +  P     PP        +  P  + P  S     
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGP 266

Query: 535 YPPPV 539
           Y  P+
Sbjct: 267 YVTPL 271

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 28/160 (17%), Positives = 33/160 (20%), Gaps = 20/160 (12%)

Query: 415 EWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPP--PLVQSPPPSSPPPVSYPPPVRSA 472
            W+  P     P  V       P P      Q  P     Q   P+  P     PP   A
Sbjct: 48  PWDPSP---QAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPA--ANPPATFA 102

Query: 473 PPPSPMPSPSSPPPAQSTPQPSP-------PPVSYPPPVRSPPP-----PSPMP-SPSSP 519
            P  P        P Q  P   P              P +             P S   P
Sbjct: 103 LPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLP 162

Query: 520 PPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPP 559
               S        +   P   + P  T             
Sbjct: 163 SQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVR 202

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.0 bits (102), Expect = 6e-04
 Identities = 10/73 (13%), Positives = 20/73 (27%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
                ++             P   +P P +    + PP   +A   +  P+      A +
Sbjct: 47  AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106

Query: 490 TPQPSPPPVSYPP 502
            P  +       P
Sbjct: 107 APAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 13/63 (20%), Positives = 20/63 (31%)

Query: 567 LYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
           L PP   +P  + P P+ +P+      +P     P  V             V     P+ 
Sbjct: 51  LAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAA 110

Query: 627 PPP 629
           P  
Sbjct: 111 PEA 113

Length = 484

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 517 SSPPPVYSPPPPSPP-------PVSYPPPVRSSPPPTPSLSPPP-PVQSPPPPSPPPVLY 568
           +S   V   P P+ P       P    PP    PPP P + P P P   P PP   PV+ 
Sbjct: 33  TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 92

Query: 569 PPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPP--PVQSPPPPSP 626
           P P   P    P P P P P   ++  P     P    P  P ++  P  P  S    + 
Sbjct: 93  PKPEPKP---KPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAA 149

Query: 627 PPP 629
             P
Sbjct: 150 SKP 152

Length = 246

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.6 bits (101), Expect = 6e-04
 Identities = 12/74 (16%), Positives = 23/74 (31%)

Query: 445 KQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPV 504
           ++ PP              +   P  +A P +   +P++  PA +         +   P 
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447

Query: 505 RSPPPPSPMPSPSS 518
                P P    +S
Sbjct: 448 APAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.6 bits (101), Expect = 6e-04
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 475 PSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
           P         PP       +P   + P    +  P +  P+ +      +  P +    +
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGA-AAAAPAAGGPAAAL-----AAVPDAAAAAA 444

Query: 535 YPPPVRSSPPPTPSLS 550
            PP   ++P P   L+
Sbjct: 445 APPAPAAAPQPAVRLN 460

Length = 598

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 21/92 (22%), Positives = 25/92 (27%), Gaps = 9/92 (9%)

Query: 522 VYSPP-PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSP 580
            Y PP PP   P    P   +S         P P Q P   +P           P   +P
Sbjct: 170 TYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQ--------QPTVQNP 221

Query: 581 TPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQ 612
              P   P      P     P      PP  +
Sbjct: 222 AQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTE 253

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 25/99 (25%), Positives = 28/99 (28%), Gaps = 7/99 (7%)

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
           P         P     P P P       V  P  P PP   Y   ++  P     P  S 
Sbjct: 115 PAPQEETVADPIQALQPRPRP---DVEEVLVPAAPEPPS--YEETIKPGPAPVEEPVDSM 169

Query: 587 SPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPS 625
           +   P    P T   PP   PPPP    P P        
Sbjct: 170 AIAVPAIDTPVTLELPPAPQPPPP--VVPQPSTMVVHRR 206

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 15/78 (19%), Positives = 24/78 (30%)

Query: 481 PSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
           PS    A + P P+P  ++           S   +P++       P P   P    PP  
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAP 405

Query: 541 SSPPPTPSLSPPPPVQSP 558
                  +     P  +P
Sbjct: 406 EPARSAEAPPLVAPAAAP 423

Length = 504

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 17/68 (25%), Positives = 22/68 (32%)

Query: 436 SPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSP 495
           S   T       P     S P  +P P + P    SA P S +   S    + +   P  
Sbjct: 75  SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPES 134

Query: 496 PPVSYPPP 503
           P  S P  
Sbjct: 135 PSTSVPSS 142

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 10/95 (10%)

Query: 432 PKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSP--MPSPSSPPPAQS 489
             P + T   +P     PP  +  P     PVS+PP    A PP     P     PP Q 
Sbjct: 125 ANPVTATGEPVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPPQV 184

Query: 490 TPQPSPPP-------VSYPPPVRSPPPPSPMPSPS 517
           T Q  P P        +Y    + P  P  +PS S
Sbjct: 185 TYQSVPVPNRIQRKTFTYNEGKKGPSLPY-IPSGS 218

Length = 475

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 40/151 (26%), Positives = 47/151 (31%), Gaps = 17/151 (11%)

Query: 434 PSSP--TPTTMP---PKQEPPPLVQSPPPSSP--PPVSYPPPVRSAPPPSPMPSPSSPPP 486
           P  P  TP   P   P+Q   P  Q   P  P  P   Y  P +   P      P  P  
Sbjct: 740 PHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA 799

Query: 487 AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
            Q   Q    PV+  P  + P        P +P P Y  P     P    P      P  
Sbjct: 800 PQPQYQQPQQPVAPQPQYQQPQ------QPVAPQPQYQQPQQPVAP---QPQDTLLHPLL 850

Query: 547 PSLSPPPPVQSPPPPSPP-PVLYPPPVRSPP 576
                  P+  P  P P   +L PPP    P
Sbjct: 851 MRNGDSRPLHKPTTPLPSLDLLTPPPSEVEP 881

Length = 1355

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 16/93 (17%)

Query: 370 PSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIV 429
                AP+P     +P  + K P P  P P     P A P  P       P         
Sbjct: 376 NDGGVAPSP---AGSPDVKKKAPEPDLPQPDRHPGP-AKPEAPG----ARP-------AE 420

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPP 462
            P   S+PTP   PP     PL    P +S P 
Sbjct: 421 LPSPASAPTPEQQPPVARSAPL-PPSPQASAPR 452

Length = 620

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 24/73 (32%), Positives = 30/73 (41%)

Query: 531 PPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPP 590
           P  +   P    PPP+ + + P P   PPPP P     P P        P P+   +PPP
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP 93

Query: 591 PIQSPPPTSPPPP 603
           P   P    PP P
Sbjct: 94  PPVDPNAPPPPAP 106

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 538 PVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPP 597
             ++   P     P     +P   S P V         P  S +PS   SP   IQ  P 
Sbjct: 113 VSQAKKSP-----PASKTSTPMNTSEPLVPGHSSFSDSPSRSASPSRKFSPSSTIQQSPQ 167

Query: 598 TSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
            +P     SP    QSP       P  S  
Sbjct: 168 LTPSNKPASPSSSYQSPSYSSSLGPVNSSG 197

Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins. Length = 559

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 25/107 (23%), Positives = 29/107 (27%), Gaps = 7/107 (6%)

Query: 437 PTPTTMPPKQEPPPLVQ-SPPPSSPPPVSYPPPVRSAPPPSP---MPSPSSPPPAQSTPQ 492
           P P   P   +P  L    P   S  P+S          P P    PS S    A  +  
Sbjct: 138 PEPRLPPGLTDPLQLADPVPNGFSADPLSALQSESLIAQPDPAGGAPSISRNSEAPLSDP 197

Query: 493 PSPPPVSYP---PPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYP 536
            S   +  P        P   SP      P    S P      V  P
Sbjct: 198 ASAGGIDTPFPDDLDVPPIAASPPGPQEGPTISASQPAQRDHAVLAP 244

Length = 430

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 42.5 bits (100), Expect = 7e-04
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 575 PPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPP 622
            P ++  P P P PPPP   PPP  PP P   P  P Q+ P   +   
Sbjct: 260 LPRATRLPEPEPQPPPP---PPPPEPPEPEEEPDEPDQTDPDDGEETD 304

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 35/223 (15%), Positives = 48/223 (21%), Gaps = 34/223 (15%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
            P +         + S   +E +              P   P             K    
Sbjct: 87  GPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEP----------KDRKPKEE 136

Query: 428 IVEPPKPS-----------SPTPTTMPPKQE---PPPLVQSPPPSSPPPVSYPPPVRSAP 473
             E   P             P       K+E        + PP   PP     PP     
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQ 196

Query: 474 PPSPMPSPSSPPPAQSTPQ----------PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVY 523
             +   +    P      +                S      S          SS     
Sbjct: 197 RQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKP 256

Query: 524 SPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV 566
            P P    P +     R+   P  SL PP    +   P+PP V
Sbjct: 257 DPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPAPPRV 299

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.4 bits (99), Expect = 8e-04
 Identities = 40/152 (26%), Positives = 51/152 (33%), Gaps = 13/152 (8%)

Query: 476 SPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPS-PSSPPPVYSPP-PPSPPPV 533
           SPM +     P +    P   PV  P    +P      P  P +P P Y  P  P  P  
Sbjct: 730 SPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQP 789

Query: 534 SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP--PVLYPPPVRSP-PPSSPTPSPSPSPP- 589
            Y  P +   P      P  PV   P    P  PV   P  + P  P +P P  +   P 
Sbjct: 790 QYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPL 849

Query: 590 -------PPIQSPPPTSPPPPVGSPPPPIQSP 614
                   P+  P    P   + +PPP    P
Sbjct: 850 LMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEP 881

Length = 1355

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 42.2 bits (99), Expect = 8e-04
 Identities = 43/243 (17%), Positives = 62/243 (25%), Gaps = 21/243 (8%)

Query: 364 SWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRV---P 420
           S  GS   TPS+        TP      P     +  + +P   S         R+   P
Sbjct: 388 SNPGSSIDTPSSSPSSSVIMTPPDSG--PGSNVSSRRVGTPGSKSDRVGAVLLRRMNIKP 445

Query: 421 RHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSS---PPPVSYPPPVRSAPPPSP 477
                P              T P       L++ PPP             P  +    + 
Sbjct: 446 TLASIPDEKPSNISVFEDSETSP---NSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTL 502

Query: 478 MPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPP 537
              P   P            ++ P P R     S +          S   P P P     
Sbjct: 503 SSIPPLSP--------RQSIITLPTPSRPASRISSLSLRL-GSYSGSIVSPPPYPTLVSR 553

Query: 538 PVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPS-PSPPPPIQSPP 596
              +      S+S     +       P  +   P ++   +S   S S PSP   I  P 
Sbjct: 554 KGAAGLSFNRSVSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLPSPTGVIGFPG 613

Query: 597 PTS 599
              
Sbjct: 614 SVP 616

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 32/113 (28%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 450 PLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPS-PPPVSYPPPVRSPP 508
           PLV  P P         P    A P  P    +    A     PS  P    PP     P
Sbjct: 42  PLV--PKPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEP 99

Query: 509 PPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPP 561
            P+P+  P  P PV  P P   P            PP P   P P V+    P
Sbjct: 100 EPAPVEPPK-PKPVEKPKPKPKPQQKVE------APPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 5/82 (6%)

Query: 526 PPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPS-SPTPSP 584
           P      V+ P P  +      +            P+           +P P   P P  
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAA----TAAGAPLPDFDPRPRG 401

Query: 585 SPSPPPPIQSPPPTSPPPPVGS 606
            P+P P   +  P    P    
Sbjct: 402 PPAPEPARSAEAPPLVAPAAAP 423

Length = 504

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 506 SPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPP 565
           S   P+      +     S    SPP  + P P R  P  +  L  P  +  P   SP P
Sbjct: 2   SSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSP 61

Query: 566 VLYPPPVRSPPPSSPTP 582
              P     P  ++ TP
Sbjct: 62  ---PSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
            S+  P+    S+     S    S  PS +SP P      PS   + + P +   P  + 
Sbjct: 1   SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPR--RRKPSASSLLHTPSILPLPKLSS 58

Query: 548 SLSPPPPVQSPPPPSPPPVLYP 569
             SPP     P   +  P L P
Sbjct: 59  P-SPPSVTLPPAATTQTPQLNP 79

Length = 590

>gnl|CDD|218883 pfam06075, DUF936, Plant protein of unknown function (DUF936)

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 46/244 (18%), Positives = 63/244 (25%), Gaps = 29/244 (11%)

Query: 388 EPKTPAP----APPTPSL------PSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSP 437
           EP +P P      P P        P   VA+ +   +         V  +I      S+P
Sbjct: 88  EPGSPVPVLRGIRPVPGRHPCVGNPEDLVAADSLAFF------SDAVIQVIKRKKASSAP 141

Query: 438 TPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSS----PPPAQSTPQP 493
              +     +   +  SP    P P S+     +   P+ + S  S    P P+  T  P
Sbjct: 142 RRGSWDSSSKSASIDSSPTVIGPRPRSFSELNLTDRTPAKVRSSRSELGAPSPSGGTSCP 201

Query: 494 SPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPP-----PVSYPPPVRSSPPPTPS 548
           S           S        S S    V     P  P          P  RSS   +P 
Sbjct: 202 SSSGGRRS----SIGSRRLRGSASLRKKVAVLSAPRKPGSRSSDCKSSPRARSSSAKSPF 257

Query: 549 LSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPP 608
            S      +           P        S   P        P  S   T       S P
Sbjct: 258 KSSIQRKATKALSKLSLRASPKDTSKSSKSEVAPPKKSEAKVPSSSKKWTDGNVSWDSLP 317

Query: 609 PPIQ 612
             + 
Sbjct: 318 SSLS 321

This family consists of several hypothetical proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown. Length = 564

>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional

 Score = 42.2 bits (99), Expect = 8e-04
 Identities = 25/137 (18%), Positives = 39/137 (28%), Gaps = 16/137 (11%)

Query: 456 PPSSPPP---VSYPPP--------VRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPV 504
           P S+ PP   V + P         +      +        P     P+ S  PV    PV
Sbjct: 303 PQSTIPPRIVVPWLPDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSDPV---VPV 359

Query: 505 RSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
            +  P              +P   +    + P   + +   T + + P            
Sbjct: 360 AAATPVDASLPDVRTGT--APTSLANVSHADPAVAQPTQAATLAGAAPKGATHLMLEETL 417

Query: 565 PVLYPPPVRSPPPSSPT 581
             L   PVR  PP +P 
Sbjct: 418 ADLRGGPVRIVPPRNPA 434

Length = 694

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 42.0 bits (98), Expect = 8e-04
 Identities = 26/132 (19%), Positives = 39/132 (29%), Gaps = 3/132 (2%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
                  P   T    Q+P P       +S  P    P V      S  P  +  P   +
Sbjct: 22  LNTNIPIPELHTSAATQKPDPAPAPHQAASRAP---DPAVAPTSAASRKPDLAQAPTPAA 78

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
           + +  P P  +    R+P P       ++P P  +    S       P    +   +   
Sbjct: 79  SEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKP 138

Query: 550 SPPPPVQSPPPP 561
            P    Q  PPP
Sbjct: 139 DPAAHTQHSPPP 150

Length = 566

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 4/120 (3%)

Query: 438 TPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPP 497
           +P +   ++     + +   S P  ++ P    S+ P     S SS   ++  P  S   
Sbjct: 16  SPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSFGLSKQRPS-SLSR 74

Query: 498 VSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQS 557
                   SP   SP  + S    + +    S    S P   R +     S    P V S
Sbjct: 75  GRLSSRFVSPSRGSPSAAASLNGSLAT---ASTSGSSSPSRSRRTTSSDLSSGNGPSVLS 131

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 25/127 (19%), Positives = 33/127 (25%), Gaps = 16/127 (12%)

Query: 471 SAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSS---PPPVYSPPP 527
            +     + S      A S P+    P S      S  P     S SS        S   
Sbjct: 18  RSSSRRRLSSSFLSTSASSRPRRLNAPAS----PPSSSPARNTSSSSSFGLSKQRPSSLS 73

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPS 587
                  +  P R SP    SL+      S    S P         S    + +   S  
Sbjct: 74  RGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSP---------SRSRRTTSSDLSSG 124

Query: 588 PPPPIQS 594
             P + S
Sbjct: 125 NGPSVLS 131

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA

 Score = 42.3 bits (99), Expect = 8e-04
 Identities = 25/98 (25%), Positives = 29/98 (29%), Gaps = 10/98 (10%)

Query: 370  PSTPSAPTPK-PSTSTPAQEPKTPAPAPPTPSLP---SPPVASPTPPTWEWNRVPRHKVP 425
            P    AP  K   T  P  +      AP  P LP   SPPV S  P       V    V 
Sbjct: 1121 PLATQAPVIKSVVTQAPVVQVTIS-VAPAAPVLPAVVSPPVVSAAPAQSVATAVAMAPVA 1179

Query: 426  PIIVEPPKPSSPTPTTMPPKQE---PPPLVQSPPPSSP 460
             + +  P   S     MP   +   P   V        
Sbjct: 1180 EVPIAVPVQQSVDY--MPSVAQAAAPQASVNDSAIQQV 1215

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.4 bits (99), Expect = 9e-04
 Identities = 35/133 (26%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 430 EPPKPSSPTPTTMPPKQ--EPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
           +P +P +P      P+Q   P P  Q P     P   Y  P +   P      P  P   
Sbjct: 754 QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP 813

Query: 488 QSTPQPSPPPVSYPPPVRSP-PPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
           Q   Q    PV+  P  + P  P +P P  +   P+      S  P+  P    ++P P+
Sbjct: 814 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDS-RPLHKP----TTPLPS 868

Query: 547 PSLSPPPPVQSPP 559
             L  PPP +  P
Sbjct: 869 LDLLTPPPSEVEP 881

Length = 1355

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 9e-04
 Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 34/154 (22%)

Query: 62  WVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLC 121
           W G D CQ++      FID        + L+   +   +P ++  L  L   + + N + 
Sbjct: 404 WSGAD-CQFDSTKGKWFIDG-------LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR 455

Query: 122 GIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGL 181
           G IP +  ++  LE  D+S N   G  P                    G+L      T L
Sbjct: 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESL-----------------GQL------TSL 492

Query: 182 DIIFLNHNWFRGSIPETIGESLARYIVLSSNNFT 215
            I+ LN N   G +P  +G    R +  +S NFT
Sbjct: 493 RILNLNGNSLSGRVPAALG---GRLLHRASFNFT 523

Length = 623

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 42.1 bits (99), Expect = 9e-04
 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 17/90 (18%)

Query: 434 PSSPTPTTM--PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTP 491
           P +     M  P   E  PL         P  +        PPP   P+P+    A +  
Sbjct: 46  PVAKAAEQMAAPEAAEAAPL---------PAAAESIASPEVPPP-VPPAPAQEGEAPAAE 95

Query: 492 QPSPPPVSYPPPVRSPPPPSPM-PSPSSPP 520
           QPS      P P  +P P  P+ PS ++ P
Sbjct: 96  QPSAV----PAPSAAPAPAEPVEPSLAANP 121

Length = 931

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQS 620
           P+PPPV+     R+P  +     P P P     + P  +  PP G     +   P  + +
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEA---AAPNGAAAPPDGVWGAALAGAPLALPA 311

Query: 621 PPPPSPPPP 629
           PP P PP P
Sbjct: 312 PPDPPPPAP 320

Length = 3151

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 51/189 (26%), Positives = 66/189 (34%), Gaps = 18/189 (9%)

Query: 369 PPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPII 428
           P + P  P  KP +S P   P + A  PP   +P        P             PP++
Sbjct: 378 PSNLPPPPALKPLSSLPTHHPPS-AHPPPLQLMPQSQPLQSVPAQ-----------PPVL 425

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
            +    S P   +  P           P +  P  S   P    PP  P  +P++PP A 
Sbjct: 426 TQ--SQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRAS 483

Query: 489 STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPS 548
           S  QP    +        P PP P       P   +  P SPP    PPP   SP PT  
Sbjct: 484 SGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPP----PPPRSPSPEPTVV 539

Query: 549 LSPPPPVQS 557
            +P    QS
Sbjct: 540 NTPSHASQS 548

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 24/105 (22%), Positives = 27/105 (25%), Gaps = 11/105 (10%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
                P A  P      PAQ    P   P     P  P+  P  P            P  
Sbjct: 104 PVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSP---------QVAPAP 154

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSA 472
                 P        P   EP    Q  P + P PV   P  + A
Sbjct: 155 QPVHSAPQPAQQAFQP--AEPVAAPQPEPVAEPAPVMDKPKRKEA 197

Length = 333

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 25/160 (15%), Positives = 36/160 (22%), Gaps = 13/160 (8%)

Query: 369 PPSTPSAPTPKPSTSTPAQEPKTPAPAP--PTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
               P A  P+P    P  +     PA      + P+   A+  P T     +P     P
Sbjct: 54  QAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPAT---FALPAGPAGP 110

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPP 486
            I    +P    P  +P                  P       +         S   P  
Sbjct: 111 TIQ--TEPGQLYPVQVPVMVT----QNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQ 164

Query: 487 AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPP 526
            QS  +     +   P      PP                
Sbjct: 165 QQSAQKNDESQLQQQP--NGETPPQQTDGAGDDESEALVR 202

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 16/78 (20%), Positives = 22/78 (28%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
           P    S    +  P+  +P P  S P     P +      +  P  P    S P PV + 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 526 PPPSPPPVSYPPPVRSSP 543
           P    P            
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 16/78 (20%), Positives = 25/78 (32%)

Query: 443 PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPP 502
           P          S P +  P  +  PP     P +P    ++  P+    + SPP      
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 503 PVRSPPPPSPMPSPSSPP 520
           P    P P    + + P 
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 23/124 (18%)

Query: 398 TPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPP 457
            P   + P A+  PP                     P++ +    P  +  P LV+    
Sbjct: 52  APPAAAAPAAAQPPPA------------------AAPAAVSRPAAPAAEPAPWLVEHAKR 93

Query: 458 SSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPS 517
            +          R+A P +P     + P  ++  + +   ++         P   +P+ +
Sbjct: 94  LTAQ--REQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARAAA---AAPRPRVPADA 148

Query: 518 SPPP 521
           +   
Sbjct: 149 AAAV 152

Length = 484

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 37/258 (14%), Positives = 57/258 (22%), Gaps = 16/258 (6%)

Query: 351 VVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPT 410
           VVS      +        PP +P         +     P T     P PSL    + +  
Sbjct: 520 VVSIKELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDP 579

Query: 411 PPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVR 470
                        V             +           PL        P  ++   P  
Sbjct: 580 F-----AFAN--TVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTPSS 632

Query: 471 SAPPPSPMPSPSSPP--PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP 528
           S    +     SS    P+      SP  +            +  P   + P ++     
Sbjct: 633 SLVGAARNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKNDPYLWDTNGE 692

Query: 529 SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP 588
                +              L+   PV  P  P        PP+     S+ +P  S   
Sbjct: 693 KAGGGTESASTTDVFQNFAGLNKKTPVGGPFQPK-------PPLSRALDSASSPGGSGGK 745

Query: 589 PPPIQSPPPTSPPPPVGS 606
           P              V  
Sbjct: 746 PGLDGVEGAKGKDDDVVG 763

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 41.1 bits (95), Expect = 0.001
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 529 SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPP--PPSPPPVLYPPPVRS---PPPSSPTPS 583
           + P  +   P +++ PP  + + P    + P    +PP     PP ++   P  ++  P+
Sbjct: 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA 279

Query: 584 PSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPS 625
            + +PP    +PP  +   P  +   P ++   P ++  PP+
Sbjct: 280 KAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPA 321

Length = 357

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 48/285 (16%), Positives = 60/285 (21%), Gaps = 63/285 (22%)

Query: 321 SGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKD-ECSWGGSPPSTPSAPTPK 379
                D   E       E    +      P+ S     S+D +  +   P  T S     
Sbjct: 10  GRWNYDSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLY--PPRETGSGGGVA 67

Query: 380 PSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTP 439
            ST         P P       P  P  +   P                     P+S   
Sbjct: 68  TSTI-----YTVPRP-------PRGPEQTLDKPD------------------SLPASR-- 95

Query: 440 TTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVS 499
             +PP   P P       SSP          S      +  P    P   +   S     
Sbjct: 96  -ELPPGPTPVPPGGFRGASSPRL---GADSTSPRFLYQVNFPVILAPIGESNSSSEELSE 151

Query: 500 YPPPVRSPPPPSPMPSPS---SPPPVYSPPPPSPPPVS---------YPPPVRSSPPPTP 547
                R PP  S          P              S                 P    
Sbjct: 152 EEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFSGLTKKAARKRKGSFVFKPSQLK 211

Query: 548 SLS-----------PPPPVQSPPP-PSPPPVLYPPPVRSPPPSSP 580
            LS                 +    P P  VLYPP +    P  P
Sbjct: 212 ELSGSLKNLLHLDDSAETDPATRQVPVPVHVLYPPLLTEYVPYKP 256

Length = 580

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 9/71 (12%), Positives = 17/71 (23%)

Query: 471 SAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSP 530
              P      P     A   P  +  P +      +  P + + +        + PP   
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 531 PPVSYPPPVRS 541
                   + S
Sbjct: 451 AAPQPAVRLNS 461

Length = 598

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 14/71 (19%), Positives = 24/71 (33%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
            P      P         P    +P  ++  P +  P    A  P    + ++PP   + 
Sbjct: 393 SPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAA 452

Query: 491 PQPSPPPVSYP 501
           PQP+    S+ 
Sbjct: 453 PQPAVRLNSFE 463

Length = 598

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
           P  PS+      P     PP   +PP     P     P  + P P+P P  ++ PPA+S 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAP---ARPAAARPAPAPAPPAAAAPPARSA 438

Query: 491 PQPSPP 496
              +  
Sbjct: 439 DPAAAA 444

Length = 576

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 24/86 (27%), Positives = 30/86 (34%)

Query: 437 PTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPP 496
             P  + P          P  SS  P +   P    P  S  P    P PAQ +  P+  
Sbjct: 181 NIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASI 240

Query: 497 PVSYPPPVRSPPPPSPMPSPSSPPPV 522
           P    PPV     P P+P P    P+
Sbjct: 241 PAPPIPPVIQYVAPPPVPPPQPIIPI 266

Length = 582

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 25/91 (27%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 394 PAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQ 453
              P    P PP + P  P    +  P     P    P    +P      P Q   P   
Sbjct: 180 GNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPAS 239

Query: 454 SPPPSSPPPVSYPPPVRSAPPPSPMPSPSSP 484
            P P  PP + Y       PPP P P P  P
Sbjct: 240 IPAPPIPPVIQYVA-----PPPVPPPQPIIP 265

Length = 582

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 29/73 (39%), Positives = 35/73 (47%)

Query: 481 PSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
           P  PPPA       PPP + PP       P+P    SSPPP  + PPP+  P S  PP++
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLK 201

Query: 541 SSPPPTPSLSPPP 553
           S    T   SP P
Sbjct: 202 SPMAGTFYRSPAP 214

Length = 274

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 23/77 (29%), Positives = 31/77 (40%)

Query: 475 PSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
             P  + + P P    P  +    +   P   PPP +P       P    PPPP+ P   
Sbjct: 32  ALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAP 91

Query: 535 YPPPVRSSPPPTPSLSP 551
            PPPV  + PP P+  P
Sbjct: 92  PPPPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 32/82 (39%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 484 PPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSP 543
           P  A + P P PPP S      +P  P P P P++PP     P P  P  + PP     P
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPA----PQPDDPNAAPPP-----P 84

Query: 544 PPTPSLSPPPPVQSPPPPSPPP 565
           P  P+  PPPPV    PP P P
Sbjct: 85  PADPNAPPPPPVDPNAPPPPAP 106

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 541 SSPPPTPSLSPPPPVQSPPPP-SPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTS 599
           S P  T + + P    +P  P    P     P  +  P+        +   P Q+   T+
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTA 220

Query: 600 PPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
             P   +P  P  + P P       +P 
Sbjct: 221 ATPAPAAPATPDGAAPLPTDQAGVSTPA 248

Length = 331

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 2/81 (2%)

Query: 510 PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP 569
             P  +P+   PV + P  S  P     P  +        +   P Q+    +  P    
Sbjct: 170 TDPATTPAPAAPVDTTPTNSQTPAVATAP--APAVDPQQNAVVAPSQANVDTAATPAPAA 227

Query: 570 PPVRSPPPSSPTPSPSPSPPP 590
           P         PT     S P 
Sbjct: 228 PATPDGAAPLPTDQAGVSTPA 248

Length = 331

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 20/105 (19%), Positives = 27/105 (25%), Gaps = 1/105 (0%)

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
                 ++       P+    P  +  P          P         P+P     P   
Sbjct: 357 SRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLV 416

Query: 489 STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPV 533
           S   P  P  SY P    P PP P  +P   P   +       P 
Sbjct: 417 SPYNPQSPGTSYGPEPVGPVPPQP-TNPYVMPISMANMVYPGHPQ 460

Length = 663

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 25/109 (22%), Positives = 31/109 (28%), Gaps = 14/109 (12%)

Query: 478 MPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPP 537
           + +PS    A +       P ++  P     P  P   P S P         P P     
Sbjct: 353 LTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGD 412

Query: 538 PVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
           P   SP      +P  P  S           P PV   PP    P   P
Sbjct: 413 PGLVSPY-----NPQSPGTSYG---------PEPVGPVPPQPTNPYVMP 447

Length = 663

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 469 VRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPS-SPPPVYSPPP 527
           V  A   S  P   +  PA+ T   + PP+       S  P  P+ +P   P  V+ P  
Sbjct: 150 VEGATNASLFPLGLAAFPAEGTL--AAPPLGEGSADGSCDPALPLSAPRLGPADVFVPAT 207

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPS 587
           P P P +   P  +  P T +  P   + +P      P     P     P+ PTP    +
Sbjct: 208 PRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEA 267

Query: 588 PPPPIQSPPPTS 599
           PP      P  S
Sbjct: 268 PPANATPAPEAS 279

Length = 401

>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 44/207 (21%), Positives = 55/207 (26%), Gaps = 6/207 (2%)

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVR-SAPPPSPMPSPSSPPPA 487
               KP S       P   P P   S   SS    S       S    S   S  + PP 
Sbjct: 372 QATEKPPSRNTPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPR 431

Query: 488 QSTPQPSPPPVSYPPPVR-----SPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSS 542
            ++P+P PP  +           +P   SP  S SS PP+  P        S        
Sbjct: 432 TASPEPEPPSTNKWQLDNWLNKVNPHKVSPAESVSSNPPIKQPMEKEGKVKSSGSQYHPE 491

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
               P  S     + P      P       +SP  S   P          + P   S   
Sbjct: 492 SKEPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQRRTVGKKQPKKPEKASAGD 551

Query: 603 PVGSPPPPIQSPPPPVQSPPPPSPPPP 629
                 P  +    P  S     P  P
Sbjct: 552 ERTGLRPESEPGTLPYGSSVQTPPDRP 578

This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
           P  TP+ +P P     PP SP   +   P  +    SP+   + +  P   S    S   
Sbjct: 87  PAATPTSAPTP--TPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGS 144

Query: 603 PVGS 606
              S
Sbjct: 145 DAAS 148

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 458 SSPPPVSYPPPVRSA-PPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSP 516
           SS  P   P P R   PPP P   P S P      +      + P  V        +P+ 
Sbjct: 426 SSRQPPGAPAPRRDNDPPPPPRARPGSTPACARRARAQRARDAGPEYVDPLGALRRLPAG 485

Query: 517 SSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSP---PPPSPPP 565
           ++PPP    P  +P P +Y   +   PP  P  +       P   PP + PP
Sbjct: 486 AAPPPE---PAAAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPP 534

Length = 694

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 14/56 (25%), Positives = 17/56 (30%)

Query: 536 PPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPP 591
           P P   SP   P+  PP    +P   +  P    P    P    P     P P   
Sbjct: 17  PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 37/90 (41%), Positives = 41/90 (45%), Gaps = 11/90 (12%)

Query: 493 PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSP- 551
            SP P   P P R  PP SP  SP   PP  SPP P     + PPP R++ P  P   P 
Sbjct: 7   RSPSPPRRPSPPRPTPPRSPDASPEETPP--SPPGPG----AEPPPGRAAGPAAPRRRPR 60

Query: 552 --PPPV--QSPPPPSPPPVLYPPPVRSPPP 577
             P  V   S  PP PP  L   P  +PPP
Sbjct: 61  GCPAGVTFSSSAPPRPPLGLDDAPAATPPP 90

Length = 318

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 28/119 (23%), Positives = 38/119 (31%), Gaps = 6/119 (5%)

Query: 424 VPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSS 483
               +   P+     P  +P   +   L   PP      +        A   S  P P +
Sbjct: 39  AAIPLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQ---DAGDAAAASVDPQPVA 95

Query: 484 PPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSS 542
            PP +STP   P     P PV+ P  P     P+ P P    P P P       P   +
Sbjct: 96  QPPVESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPK---PEPKPVAEPAAAPTGQA 151

Length = 226

>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 15/65 (23%)

Query: 471 SAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPP--------SPM-------PS 515
           +A P +P+   ++  P  + P  +    + P    +            SPM       PS
Sbjct: 36  AAAPVAPVAQQAAAAPVAAAPAAAAAAAAAPAAAPAAAAAEAEGHVVTSPMVGTFYRAPS 95

Query: 516 PSSPP 520
           P +PP
Sbjct: 96  PDAPP 100

Length = 155

>gnl|CDD|184285 PRK13733, PRK13733, conjugal transfer protein TraV; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
            +P   S P       +  P   V +  PS   P     P +    P P    ++     
Sbjct: 55  AKPAAASLPRLAEGNFRTMPVQTVTATTPSGSRPAVTATPEQKLLAPRP-LFTAAREVKT 113

Query: 489 STPQPSPPPVSYPPPVRSP 507
             P  S  PV+ P P+R+ 
Sbjct: 114 VVPVSSVTPVTPPRPLRTG 132

Length = 171

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 40.6 bits (94), Expect = 0.001
 Identities = 39/124 (31%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPS----PPPVSYPPPVR 540
           P  QS   PSP   +  P   +  P +P P+ + P P  + PP +    PPP   P P R
Sbjct: 76  PSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPAR 135

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYP-------PPVRSPPPSSPTPSPSPSPPPPIQ 593
            +P   PS    PP    P P P P   P       PP   P  S PT   +P+  P ++
Sbjct: 136 PAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLE 195

Query: 594 SPPP 597
              P
Sbjct: 196 PRIP 199

Length = 280

>gnl|CDD|218994 pfam06333, Med13_C, Mediator complex subunit 13 C-terminal

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 20/70 (28%), Positives = 28/70 (40%)

Query: 467 PPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPP 526
           P +   PP  P+P         STPQ +P  +S+P P +    P+P    +         
Sbjct: 229 PKLVPDPPTQPIPFSRFNTSNSSTPQSTPCTLSFPSPDQFGNAPTPPLGENGNDNAPPVT 288

Query: 527 PPSPPPVSYP 536
           PP  P  S P
Sbjct: 289 PPGSPSESDP 298

Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med13 is part of the ancillary kinase module, together with Med12, CDK8 and CycC, which in yeast is implicated in transcriptional repression, though most of this activity is likely attributable to the CDK8 kinase. The large Med12 and Med13 proteins are required for specific developmental processes in Drosophila, zebrafish, and Caenorhabditis elegans but their biochemical functions are not understood. Length = 406

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 38/180 (21%), Positives = 50/180 (27%), Gaps = 11/180 (6%)

Query: 452 VQSPPPSSPPPVSYPP-PVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPP 510
             +PPP         P   R A  P P P  ++P  A      +PP   +   +   P  
Sbjct: 254 APAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGA-----AAPPDGVWGAALAGAPLA 308

Query: 511 SPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPP 570
            P P    PP                  V   P P        P +  P  +PP  L   
Sbjct: 309 LPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDL 368

Query: 571 PV-RSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
              R  P  +  P+          +P    P    G       + P P   P P   P P
Sbjct: 369 SAGRHHPKRASLPTRKRRSARHAATPFARGP----GGDDQTRPAAPVPASVPTPAPTPVP 424

Length = 3151

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 521 PVYSPP-PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSS 579
           P+++P   P   P     P +    P   ++P P  Q P  P  P   Y  P        
Sbjct: 743 PLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQP-------- 794

Query: 580 PTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
               P    P   Q   P +P P    P  P+   P   Q   P +P P
Sbjct: 795 --QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQP 841

Length = 1355

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 25/136 (18%), Positives = 37/136 (27%), Gaps = 3/136 (2%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
           + P P +  P  +P       L   P        +      + PP +         P   
Sbjct: 54  QAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQ 113

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
           T      PV  P  V   P  SP+  P+    +         P S       S   +   
Sbjct: 114 TEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPAS---GQLPSQQQSAQK 170

Query: 550 SPPPPVQSPPPPSPPP 565
           +    +Q  P    PP
Sbjct: 171 NDESQLQQQPNGETPP 186

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 1/77 (1%)

Query: 424 VPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSS 483
               I     P++PTP   P     P    +P          PPP   A PP P+P+  +
Sbjct: 364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPA-KASPPIPVPAEPT 422

Query: 484 PPPAQSTPQPSPPPVSY 500
            P        +  P S 
Sbjct: 423 EPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 424 VPPIIVEPPKPSSPTP----TTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP 479
           +P  I  PP  S P      +++ P     P  + P  S  P +  P P + + PP+ +P
Sbjct: 182 IPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIP 241

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPV 504
           +P  PP  Q    P  PP     P+
Sbjct: 242 APPIPPVIQYVAPPPVPPPQPIIPI 266

Length = 582

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 46/271 (16%), Positives = 63/271 (23%), Gaps = 62/271 (22%)

Query: 419  VPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPP-----PVRSAP 473
            V       +  EP     P P T   K   P + Q+ P       +        P RS  
Sbjct: 740  VAPVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQDEENNAENRDNNGMPRRSRR 799

Query: 474  PP---------------------SPMP------SP-------------SSPPPAQSTPQP 493
             P                     SPMP      SP               P   Q   Q 
Sbjct: 800  SPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRYPVVRPQDVQVEEQR 859

Query: 494  SPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPP 553
                V   P V   P  + +    S P V +       PV    P         +  P  
Sbjct: 860  EAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEV 919

Query: 554  ---PVQSPPPPSPP--------------PVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPP 596
               PV   P                   PV+ P    +    +   +      P + + P
Sbjct: 920  IAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQP 979

Query: 597  PTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
                   V +    + +  P V     P   
Sbjct: 980  AAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010

Length = 1068

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 75/314 (23%), Positives = 92/314 (29%), Gaps = 54/314 (17%)

Query: 368 SPPSTPSAPTPKPSTST----PAQEPKTPA--PAPPTPSLPSPPVASPTPPTWEWNRVPR 421
           S P  P+  TP   T+     P Q P T A  PAPP                 E   V  
Sbjct: 460 SVPVEPAHLTPVEHTTVILHQPPQSPPTVAIKPAPPPSRRRRGACVVYDDDIIEVIDVET 519

Query: 422 HKVPPIIVEPPKP---------------SSPTPTTMPPKQEPPPLVQSP---PPSSPPPV 463
            +    + +P KP                  TP  + P    PP    P   PPS+ P V
Sbjct: 520 TEEEESVTQPAKPHRKVQDGFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRV 579

Query: 464 SYPPPV--RSAPPPSPMP--------SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPM 513
              P    R   PPS  P         P +  P +  P  S P    P  VR       +
Sbjct: 580 MATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLL 639

Query: 514 PSPSSPPPV--------YSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPP 565
              + P P                  P S   P   S PP PS  P   V          
Sbjct: 640 EQSTGPKPKSFWEMRAGRDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAGRAQ 699

Query: 566 VLYPPPVRSPPPSSPTPSPS------PSPPPPIQSPPPTSPPPPVGSP------PPPIQS 613
                 + S  P+ P           P  P  +   P  +PPP   +P      P   Q+
Sbjct: 700 PSEESHLSSMSPTQPISHEEQPRYEDPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQA 759

Query: 614 PPPPVQSPPPPSPP 627
           P P    P PP  P
Sbjct: 760 PYPGYWEPRPPQAP 773

Length = 1000

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 421 RHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAP-PPSPMP 479
           + K P    + P+P        P      P     P S+P P   PP  RSAP PPSP  
Sbjct: 391 KKKAPE--PDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQ- 447

Query: 480 SPSSPPPAQSTPQPS 494
             +S P   ++ +P 
Sbjct: 448 --ASAPRNVASGKPG 460

Length = 620

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 552 PPPVQSPPPPSPPPVLYPPPVRSP-PPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPP 610
           PPP       + P    PPP   P  P +P P    + PPP  + P   PPPPV    PP
Sbjct: 43  PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102

Query: 611 IQSPPP 616
             +P P
Sbjct: 103 PPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 16/69 (23%), Positives = 28/69 (40%)

Query: 472 APPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPP 531
           APP +   + ++    ++TP+        P P  +  P  P  +    P   + PPP+P 
Sbjct: 123 APPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPV 182

Query: 532 PVSYPPPVR 540
             + P   R
Sbjct: 183 ARADPRETR 191

Length = 418

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 19/73 (26%), Positives = 27/73 (36%)

Query: 507 PPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV 566
           PP  +P  + ++     +P  P     +  PP  S P P  +  PP P  +  PP  P  
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVA 183

Query: 567 LYPPPVRSPPPSS 579
              P     P S 
Sbjct: 184 RADPRETRVPMSR 196

Length = 418

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 478 MPSPSSPPPAQSTPQPSPPPVSY---PPPVRSPPPP-SPMPSPSSPPPVYSPPPPSPPPV 533
           M   SS   +Q++ Q  P   S    P    +P  P    P+ S  P V + P P+  P 
Sbjct: 146 MADQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQ 205

Query: 534 SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
                  +   P+ +        +P  P+ P    P P      S+P   P+ 
Sbjct: 206 Q-----NAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 19/93 (20%), Positives = 24/93 (25%)

Query: 454 SPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPM 513
           +       P ++  P     P  P   P S P         P P     P    P     
Sbjct: 364 AKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQS 423

Query: 514 PSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
           P  S  P    P PP P      P   ++    
Sbjct: 424 PGTSYGPEPVGPVPPQPTNPYVMPISMANMVYP 456

Length = 663

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 33/118 (27%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 506 SPPPPSPMPSPSS------PPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQ-SP 558
           S P  S    P+S      P P    P  + P     P   +   P PS +P P V    
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 559 PPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPP 616
            PP+PP    PP    P P  P  SP P  P  + S     P     S         P
Sbjct: 439 APPAPPRSGIPP---RPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGP 493

Length = 624

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 20/80 (25%), Positives = 28/80 (35%)

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
           SS P + S S      S    S PP    P  R   PS+ +   +PS  P  +   P+ P
Sbjct: 3   SSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPP 62

Query: 601 PPPVGSPPPPIQSPPPPVQS 620
              +            P+Q 
Sbjct: 63  SVTLPPAATTQTPQLNPLQR 82

Length = 590

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 18/62 (29%), Positives = 19/62 (30%)

Query: 568 YPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
            P        SS + S S S PP   SP P    P   S        P P  S P P   
Sbjct: 5   NPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSV 64

Query: 628 PP 629
             
Sbjct: 65  TL 66

Length = 590

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP 607
           S +P    QS    S        P  S  P      PS S        P   P P + SP
Sbjct: 3   SSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLL---HTPSILPLPKLSSP 59

Query: 608 PPPIQSPPPPVQSPPP 623
            PP  + PP   +  P
Sbjct: 60  SPPSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 554 PVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQS 613
           P+  P PP P     PP  +SP P+ PTP P+ +P  P   P P +  P   + PPP   
Sbjct: 81  PLTPPAPPEPVT---PPTAQSPAPAVPTPPPTSTPAVP---PAPAAAVPAPAAAPPPSDP 134

Query: 614 PPPP 617
           P PP
Sbjct: 135 PQPP 138

Length = 141

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 577 PSSPTPSPSPSPPPPIQSPPPT--SPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           P +P   P P  PP  QSP P   +PPP      PP  +   P  +  PP   PP
Sbjct: 81  PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPP 135

Length = 141

>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 33/118 (27%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 515 SPSSPPPVYSPPPPSPPPVSYPP-PVRSSP--PPTPSLSPPPPVQSPPPPSPPPVLYPPP 571
           S SS  P  SP    PP +S P     S        S  P               L+ P 
Sbjct: 277 SRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSGTKDSLWSPS 336

Query: 572 VR---SPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
                + PPSS   SP      P  S      P   GS      S   P  SPPPP  
Sbjct: 337 SLCGMATPPSSIGMSPLILSLSP--SHLSGRAPGTTGSGKGEPASESTPSTSPPPPGL 392

This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667

>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 32/145 (22%), Positives = 44/145 (30%), Gaps = 9/145 (6%)

Query: 454 SPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPM 513
           S   SS  P S P    + PP   +P  +S   +  + Q S  P +      S      +
Sbjct: 275 SFSRSSAYPNSSPRQ--ALPPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSGTKDSL 332

Query: 514 PSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVR 573
            SPSS     + PP S      P  +  SP      +P         P+        P  
Sbjct: 333 WSPSSLCG-MATPPSSIG--MSPLILSLSPSHLSGRAPGTTGSGKGEPASEST----PST 385

Query: 574 SPPPSSPTPSPSPSPPPPIQSPPPT 598
           SPPP         +         P 
Sbjct: 386 SPPPPGLADDIVRAIFATSSRSAPR 410

This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 13/57 (22%), Positives = 18/57 (31%)

Query: 472 APPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP 528
           A  P+  P+P+  PPA      S  P S           +   +P SP         
Sbjct: 88  AATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGS 144

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 27/112 (24%), Positives = 35/112 (31%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
           E P          P +Q  PP     PP   PP     P     P  P P P   P  + 
Sbjct: 50  EAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRS 541
             +P P P   P    +  P +P      P    +    + P  SY   +R 
Sbjct: 110 KVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRR 161

Length = 244

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 27/122 (22%), Positives = 36/122 (29%), Gaps = 2/122 (1%)

Query: 503 PVRSPPPP--SPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
           P    P    S             P P  PP ++ P  +    P   S  P   +QS   
Sbjct: 114 PDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSALQSESL 173

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQS 620
            + P      P  S    +P   P+ +       P     PP   SPP P + P      
Sbjct: 174 IAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASPPGPQEGPTISASQ 233

Query: 621 PP 622
           P 
Sbjct: 234 PA 235

Length = 430

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 5/103 (4%)

Query: 513 MPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSP-PPPVQSPPPPSPPPVLYPPP 571
           + S        S P     P S      SS P   + S     +    P S         
Sbjct: 25  LSSSFLSTSASSRPRRLNAPAS----PPSSSPARNTSSSSSFGLSKQRPSSLSRGRLSSR 80

Query: 572 VRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSP 614
             SP   SP+ + S +      S   +S P           S 
Sbjct: 81  FVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDLSS 123

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 547 PSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
           P+ +PP P  +P PP P     P    + P ++   +  P    P +   P     
Sbjct: 17  PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 446 QEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVR 505
            E P      P ++P P   PPP ++A P +   +P++  P    P+   P        R
Sbjct: 14  AEQPAPAPPSPAAAPAP---PPPAKTAAPATKAAAPAAAAPRAEKPKKDKP--------R 62

Query: 506 SPPPPSPMP 514
               P P  
Sbjct: 63  RERKPKPAS 71

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 15/56 (26%), Positives = 20/56 (35%)

Query: 525 PPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSP 580
           P P  P P + P P   +    P+     P  + P    P    P   R P P+S 
Sbjct: 17  PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 22/80 (27%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 484 PPPAQSTPQPSPPPVSYPPPVR---SPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
           P   Q    P+ PP      ++        S  P P + PPV S P   P     P PV+
Sbjct: 58  PAVVQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPAGVPVAAQTPKPVK 117

Query: 541 SSPPPTPSLSPPPPVQSPPP 560
               P     P  P   P P
Sbjct: 118 PPKQPPAGAVPAKPTPKPEP 137

Length = 226

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 577 PSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
            +  T  P P+       PPP  P     + PPP ++P  P   P P +P   
Sbjct: 53  VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAEN 105

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 24/90 (26%), Positives = 33/90 (36%)

Query: 516 PSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP 575
           PS      SP   + P        +S+PP   S S      + PP +      P P  + 
Sbjct: 87  PSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTA 146

Query: 576 PPSSPTPSPSPSPPPPIQSPPPTSPPPPVG 605
            P++P    SP   PP+   PPT   P   
Sbjct: 147 QPATPDERRSPRQRPPVSGEPPTPSTPDAH 176

Length = 226

>gnl|CDD|148777 pfam07358, DUF1482, Protein of unknown function (DUF1482)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 326 DVYFEEKGNCLAEMEYQKLPTECYPV 351
            VY  E+  CLA    QK+   CYPV
Sbjct: 21  GVYNTEQ-QCLAAAAEQKIRGGCYPV 45

This family consists of several Enterobacterial proteins of around 60 residues in length. The function of this family is unknown. Length = 57

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 28/173 (16%), Positives = 38/173 (21%), Gaps = 17/173 (9%)

Query: 378 PKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSP 437
            K S     ++PKTP    P  SL  P  +     T     +              P + 
Sbjct: 637 KKSS---ADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFEL--ATHQSVPEAA 691

Query: 438 TPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPP 497
             +   P   P P     PP    P                 S S    + S  Q     
Sbjct: 692 LASGSAPAPPPVPDPYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQ 751

Query: 498 VSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLS 550
            +          P       SP    +    S            +     S S
Sbjct: 752 AT--------HQPQVQAEAQSPASTTALTQTSSEVQ----DTELNLVLLSSGS 792

Length = 944

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
           P    S       P    P    SPPP+   P        SAP      +  SPPPA+++
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQP--------SAPKTKQAATTPSPPPAKAS 412

Query: 491 PQPSPPPVSYPPPVRSPPPPSPMPSPS 517
           P    P     P    P   +  P   
Sbjct: 413 PPIPVPAEPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 12/88 (13%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
             +  +  +A       + PA +    APAP  P+  + P A P P              
Sbjct: 43  APTAAAAAAAAAASAPAAAPAAKAP-AAPAPAPPA-AAAPAAPPKPA----------AAA 90

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQ 453
                P  P +      P        V 
Sbjct: 91  AAAAAPAAPPAAAAAAAPAAAAVEDEVT 118

Length = 1228

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 39.9 bits (92), Expect = 0.003
 Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPS-LPSPPVASPTPPTWEWNRVPRHKVPP 426
           S   +  A  P  + + PA+    PA A   P+   + P  +  PP        +   PP
Sbjct: 212 SGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPA-------KAAAPP 264

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPP---SSPPPVSYPPPVRSAPPPSPMPSPSS 483
                P   +  P   P K   PP   + PP   ++ P  +   P ++A  P+   +P +
Sbjct: 265 AKAAAPPAKAAAP---PAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPA 321

Query: 484 PPPAQSTPQPSPPPVSYPPPVRSPPPP 510
              A      +PP  +  PP ++   P
Sbjct: 322 KAAAPPAKAATPPAKAAAPPAKAAAAP 348

Length = 357

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 28/141 (19%), Positives = 36/141 (25%), Gaps = 5/141 (3%)

Query: 461 PPVSYPPPVRSAPPPSPMPSPSSPP-PAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSP 519
           P        +       M +              + P     P + S    SP P P   
Sbjct: 366 PAAHQQQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMS----SPSPVPQVQ 421

Query: 520 PPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSS 579
                P PP P   S   P    P        P P    P PSP     P   R+     
Sbjct: 422 TNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPSPPALMPSPSPQMSQSPASQRTIQQDM 481

Query: 580 PTPSPSPSPPPPIQSPPPTSP 600
            +P    + P       P +P
Sbjct: 482 VSPGGPLNTPGQSSVNSPANP 502

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP-PAQS 489
              P +  P         PP   S  PS+        P  S  P  P PSP+ P  P  S
Sbjct: 180 GNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPAS 239

Query: 490 TPQPS-PPPVSYPPPVRSPPPPSPMP 514
            P P  PP + Y  P   PPP   +P
Sbjct: 240 IPAPPIPPVIQYVAPPPVPPPQPIIP 265

Length = 582

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 5/85 (5%)

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS 574
             +  PP  +P   +         VRS      + +        P P   P    PP  +
Sbjct: 350 VAAVAPPAPAPADLTQRLNRLEKEVRSLRS---APTAAATAAGAPLPDFDPRPRGPP--A 404

Query: 575 PPPSSPTPSPSPSPPPPIQSPPPTS 599
           P P+    +P    P    +     
Sbjct: 405 PEPARSAEAPPLVAPAAAPAGLALR 429

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 516 PSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP 575
           PS      +PP P+P  ++           +   +P          +  P+    P    
Sbjct: 346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAA----ATAAGAPLPDFDPRPRG 401

Query: 576 PPSSPTPSPSPSPPPPIQSPPPTSPP 601
           PP+      + +PP    +  P    
Sbjct: 402 PPAPEPARSAEAPPLVAPAAAPAGLA 427

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 1/89 (1%)

Query: 395 APPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQS 454
               PS     VA P P   +  +        +      P++       P  +  P    
Sbjct: 342 LGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDP-RPR 400

Query: 455 PPPSSPPPVSYPPPVRSAPPPSPMPSPSS 483
            PP+  P  S   P   AP  +P      
Sbjct: 401 GPPAPEPARSAEAPPLVAPAAAPAGLALR 429

Length = 504

>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPP-PVRSPPPSSP----TPSPSPSPPPPIQSPPP 597
           PP    L    P  + P P P PV+ P  PV+   P +P     P+  P P P     P 
Sbjct: 9   PPGLAGLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPH 68

Query: 598 TSP-----PPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
                   P P  +PP    + P  ++ PPPP+  P 
Sbjct: 69  VVQQAPAQPAPA-APPAAGAALPEALEVPPPPAFTPN 104

Length = 306

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 556 QSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPP 615
            + P  +P P     PV + P +S TP+ + +P P +         P   +        P
Sbjct: 169 TTDPATTPAP---AAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAP 225

Query: 616 PPVQSPPPPSPPPP 629
               +P   +P P 
Sbjct: 226 AAPATPDGAAPLPT 239

Length = 331

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 18/77 (23%), Positives = 22/77 (28%), Gaps = 5/77 (6%)

Query: 556 QSPPPPSPPPVLYPPPVRSPPPSSPTPS---PSPSPPPPIQSPPPTSPPPPVGSPPPPIQ 612
            S   P+     +     S    S  PS   P P    P  S    +P       P    
Sbjct: 1   SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL--PLPKLSS 58

Query: 613 SPPPPVQSPPPPSPPPP 629
             PP V  PP  +   P
Sbjct: 59  PSPPSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 534 SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQ 593
           S P     S   + S S      SPP  + P      P  S    +P+  P P    P  
Sbjct: 4   SNPTSRSQSHASSSSSSSSQS--SPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSP-- 59

Query: 594 SPPPTSPPPPVGSPPP 609
           SPP  + PP   +  P
Sbjct: 60  SPPSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 23/75 (30%), Positives = 29/75 (38%)

Query: 435 SSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPS 494
           SS +  T   +        S   SSPP  + P P R  P  S +    S  P      PS
Sbjct: 1   SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60

Query: 495 PPPVSYPPPVRSPPP 509
           PP V+ PP   +  P
Sbjct: 61  PPSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 18/61 (29%), Positives = 26/61 (42%)

Query: 468 PVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPP 527
           P+    PP P+  P++  PA + P P P      PP  +   P+P  +P    P   P  
Sbjct: 81  PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAPPPSDPPQPPRA 140

Query: 528 P 528
           P
Sbjct: 141 P 141

Length = 141

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 26/157 (16%), Positives = 38/157 (24%), Gaps = 17/157 (10%)

Query: 479 PSPSSPPPAQSTPQPSPP-------PVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPP 531
            S  +  P + + +                        P P+P+   PPPV  P    P 
Sbjct: 266 SSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPE 325

Query: 532 PVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPP 591
                P    +        P     S    S          +    + P  S + +    
Sbjct: 326 AGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQN-------KDSGSTGPGSSLAAASSFL 378

Query: 592 IQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
                     PP+         P P V S P P   P
Sbjct: 379 ED---DDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIP 412

Length = 418

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 9/55 (16%), Positives = 12/55 (21%)

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTS 599
           P        P  S     P P        + P              P  + P +S
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSS 261

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 14/58 (24%), Positives = 21/58 (36%)

Query: 552 PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPP 609
            P  +  P PS       P   +  P +    P+P+P P   + P  + P   G   P
Sbjct: 209 EPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGP 266

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 29/140 (20%), Positives = 42/140 (30%), Gaps = 3/140 (2%)

Query: 469 VRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP 528
           +  A P    P   SP  A S+       ++   P    PP    P   + P    P   
Sbjct: 104 LSRAEPDESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADP---VPNGF 160

Query: 529 SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP 588
           S  P+S          P P+   P   ++   P   P          P     P  + SP
Sbjct: 161 SADPLSALQSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAASP 220

Query: 589 PPPIQSPPPTSPPPPVGSPP 608
           P P + P  ++  P      
Sbjct: 221 PGPQEGPTISASQPAQRDHA 240

Length = 430

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 23/124 (18%), Positives = 31/124 (25%), Gaps = 6/124 (4%)

Query: 470 RSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSP-PPPSPMPSPSSPPP--VYSPP 526
           R+A   S   S  +  P  S+ +              P    +P   PSS P     S  
Sbjct: 1   RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSS 60

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSPPP--PVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP 584
                        R     +  +SP    P  +                SP  S  T S 
Sbjct: 61  SFGLSKQRPSSLSRGRLS-SRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSS 119

Query: 585 SPSP 588
             S 
Sbjct: 120 DLSS 123

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 11/54 (20%), Positives = 17/54 (31%)

Query: 576 PPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
            P+   PSP+ +P PP  +                 ++  P    P     P P
Sbjct: 16  QPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKP 69

Length = 475

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 39.8 bits (92), Expect = 0.003
 Identities = 37/122 (30%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 367 GSPPSTPSAPTPKPSTSTPAQEPKTPAPAP--PTPSLPSPPVASPTPPTWEWNRVPRHKV 424
           G  P  PS     P+ + PA  P  PAPA   P P+   PP  +PT P       P    
Sbjct: 78  GQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPA 137

Query: 425 P--PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPS 482
           P  P       P+ P PT  P     P  + +  P    P +  P + +AP  SP+  P 
Sbjct: 138 PACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEPR 197

Query: 483 SP 484
            P
Sbjct: 198 IP 199

Length = 280

>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 21/86 (24%), Positives = 26/86 (30%), Gaps = 2/86 (2%)

Query: 457 PSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPP--PVRSPPPPSPMP 514
           PS     + P         +     S+PP A ST          P     R  P P P  
Sbjct: 87  PSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTA 146

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVR 540
            P++P    SP    P     P P  
Sbjct: 147 QPATPDERRSPRQRPPVSGEPPTPST 172

Length = 226

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 7/37 (18%)

Query: 592 IQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
           + S PP +PPPP   PPPP   PP    S PPP PPP
Sbjct: 1   MASLPPGNPPPP---PPPPGFEPP----SQPPPPPPP 30

Length = 2365

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 40.8 bits (95), Expect = 0.003
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 570 PPVRSPPPSSPTPSPSPSP-PPPIQSPPPTSPPPPV 604
           PP  SPP   PTP P P+P P P   P PT    PV
Sbjct: 920 PP--SPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPV 953

Length = 1250

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 576 PPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPP 609
           PPS P P P+P  P P   P PT  P P  +  P
Sbjct: 920 PPSPPDPDPTPD-PDPTPDPDPTPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 42/169 (24%), Positives = 57/169 (33%), Gaps = 9/169 (5%)

Query: 432 PKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS-- 489
           PK +  T  T      P  +     PS   P S P         +     S+ P      
Sbjct: 168 PKTAVTTSKTTS---WPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGT 224

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
           T   +P P + PPP +  P  SP   PS+     S               R +PP T + 
Sbjct: 225 TTSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDG----QEHTQRRKTPPATSNR 280

Query: 550 SPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPT 598
             P    +PPP +       P  R    +    SP  S PP +Q+ P T
Sbjct: 281 RSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTT 329

Length = 408

>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 22/115 (19%), Positives = 28/115 (24%), Gaps = 7/115 (6%)

Query: 520 PPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVL-------YPPPV 572
           P V     P  P  ++PPP+  +     +L      Q                       
Sbjct: 127 PAVRLLLGPDTPTSAFPPPLGRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLD 186

Query: 573 RSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
            S  P     SP+  PPPP                P     PP          PP
Sbjct: 187 GSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAAGRPP 241

Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. Length = 401

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 44 LQAFKKAIYSDPYNHTENWVGTDV--CQYNGVLCD 76
          L AFK ++  DP     +W  +    C + GV CD
Sbjct: 8  LLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32

 Score = 39.7 bits (92), Expect = 0.003
 Identities = 35/150 (23%), Positives = 47/150 (31%), Gaps = 5/150 (3%)

Query: 481 PSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
           P+     Q   QP+   V+  P  +  P   P P     P  +  P    P +   P   
Sbjct: 132 PTEEVNTQEPTQPAGVNVANNPQPQVQPQFGPNPQQRINPQRFGFPMQ--PNMGMRPGFN 189

Query: 541 SSPPPTPSLSPP---PPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPP 597
             PP  P + P    P     P   P P     P   P  + P   P P       +P  
Sbjct: 190 QMPPHMPGMPPNQMRPGFNPMPGMPPRPGFNQNPNMMPNMNRPGFRPQPGGFNHPGTPMG 249

Query: 598 TSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
            +     G  P    +PPP +  P    PP
Sbjct: 250 PNMQQRPGFNPNQGMNPPPHMAGPRAGFPP 279

This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 28/78 (35%), Positives = 32/78 (41%)

Query: 551 PPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPP 610
             PP  + P   PP     PPV   PP        P P  P   PP   PP P  + PP 
Sbjct: 29  FSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPS 88

Query: 611 IQSPPPPVQSPPPPSPPP 628
             +PP P + PP P P P
Sbjct: 89  PLAPPAPARKPPLPPPRP 106

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 13/114 (11%), Positives = 24/114 (21%), Gaps = 22/114 (19%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
             +  +   A  P+P+ +                     P  +  P              
Sbjct: 417 PAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP-------------- 462

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP 479
                    + P P      +       +PP +  P  +   P   A P     
Sbjct: 463 --------SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 24/110 (21%), Positives = 30/110 (27%), Gaps = 17/110 (15%)

Query: 537 PPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS---------------PPPSSPT 581
            P+R +    PS   P P       +  P L  P  R                 P     
Sbjct: 80  RPIRIAITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQL 139

Query: 582 PSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQS--PPPPVQSPPPPSPPPP 629
           P+  P+ P   Q P P + P          Q    PP      P S  P 
Sbjct: 140 PTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPE 189

Length = 617

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 36/211 (17%), Positives = 55/211 (26%), Gaps = 16/211 (7%)

Query: 434 PSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYP-PPVRSAPPPSPMPSPSSPPPAQSTPQ 492
            S      +   +   P  Q+    +      P P   +A  P    S ++ P    T  
Sbjct: 364 ASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAG 423

Query: 493 PS--------PPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP 544
           P         PP    P   ++    +   +  S         P    VS      +   
Sbjct: 424 PVSNQENNDVPPWEDAPDEAQTAAGTAQTSA-KSIQTASEAETPPENQVSKNKAADNETD 482

Query: 545 PTPSLSPPP-PVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPP--IQSPPP---T 598
              S  P   P+Q+ P                 P      P    PP    + PPP    
Sbjct: 483 APLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEH 542

Query: 599 SPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           + P          ++    +     PS PPP
Sbjct: 543 AAPADTAGGGADEEAEAGGIGGNNTPSAPPP 573

Length = 709

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 556 QSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPP 615
             PPPP+P  ++ PPP  + PP+SP  +  P+P  P  SPPPT   PP   P    +S  
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAA-QPAPSAPASSPPPTPASPP---PAKAPKSSH 197

Query: 616 PPVQSP 621
           PP++SP
Sbjct: 198 PPLKSP 203

Length = 274

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 12/83 (14%), Positives = 18/83 (21%)

Query: 469 VRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP 528
             S    +  P   +P             V       +    +         P    PP 
Sbjct: 345 APSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPA 404

Query: 529 SPPPVSYPPPVRSSPPPTPSLSP 551
             P  S   P   +P   P+   
Sbjct: 405 PEPARSAEAPPLVAPAAAPAGLA 427

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 16/77 (20%), Positives = 26/77 (33%)

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
           V PP P+    T    + E         P++    +  P     P P   P+P     A+
Sbjct: 353 VAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAE 412

Query: 489 STPQPSPPPVSYPPPVR 505
           + P  +P        +R
Sbjct: 413 APPLVAPAAAPAGLALR 429

Length = 504

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 5/84 (5%)

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRS-PPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPP 538
             +  PPA +    +         VRS    P+   + +  P     P   P P   P P
Sbjct: 350 VAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAP----LPDFDPRPRGPPAP 405

Query: 539 VRSSPPPTPSLSPPPPVQSPPPPS 562
             +     P L  P    +     
Sbjct: 406 EPARSAEAPPLVAPAAAPAGLALR 429

Length = 504

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 455 PPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSP 512
           PP ++P   +     ++ P      +P+  PPA S P P        P   + PPP+P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTP 181

Length = 418

>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 2/108 (1%)

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
           P   R     +  PS              P  V+ P   R       SLS P  ++SP  
Sbjct: 151 PLQHRKRDAVTASPSSMIARNTPISDRLRPRSVT-PTRGRRPSSSPRSLSNPTTLESPSN 209

Query: 561 P-SPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP 607
                 V  P    +   S+ + S + S    + +P          + 
Sbjct: 210 LQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTS 257

SOG2 proteins in Saccharomyces cerevisiae are involved in cell separation and cytokinesis. Length = 419

>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function unknown]

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 1/90 (1%)

Query: 500 YPPPVR-SPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSP 558
             P  + + P      +  +P P          P     PV  +       +        
Sbjct: 424 KAPTGQLAHPIEDRDEAIMAPLPEAPAKSAIEEPADELEPVAEAAETEGKGTDRSARAVK 483

Query: 559 PPPSPPPVLYPPPVRSPPPSSPTPSPSPSP 588
           P P   P  YP   ++  P+     P   P
Sbjct: 484 PIPVIAPAAYPASAKTAEPAGFFGRPPDDP 513

Length = 531

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 6/57 (10%)

Query: 472 APPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP 528
           A P +  P+PS       +   +  P        +P PP   P+P + PP       
Sbjct: 270 AQPATAAPAPSRMTDTNDSKSVTSQP---AAAAAAPAPP---PNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPS 482
            P  ++P P+ M           +  P++      PPP   A PP P     
Sbjct: 271 QPATAAPAPSRMT--DTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRG 320

Length = 656

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 3/53 (5%)

Query: 496 PPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPS 548
            P +  P        +   S +S P   +  P  PP     PP    PP    
Sbjct: 271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPE---PPARRG 320

Length = 656

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP 544
            PA + P PS          +S    +  P+ ++  P   P PP+ PP       R S  
Sbjct: 271 QPATAAPAPSRMTD--TNDSKSV---TSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325

Length = 656

>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 27/150 (18%), Positives = 36/150 (24%), Gaps = 11/150 (7%)

Query: 461 PPVSYPPPVRSAPPPSPMPSPSSPPPA------QSTPQPSPPPVSYPPPVRSPPPPSPMP 514
             +    P R +     M + +                P P P S PPP    P      
Sbjct: 266 SSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVKHPE 325

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPP--PV 572
           +    P          P     P   +S   + S        + P  S            
Sbjct: 326 AGKEEPDGARNAEAKEPA---QPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDD 382

Query: 573 RSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
              PP   T S    P P + S P     P
Sbjct: 383 FGSPPLDLTTSLRHMPSPSVTSAPEPPSIP 412

Length = 418

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 546 TPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVG 605
                P     S P P+P P   P    S  P+S     SPS      +  P SP   V 
Sbjct: 82  GKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESA-TATAPESPSTSVP 140

Query: 606 SPPPPIQS 613
           S      S
Sbjct: 141 SSGSDAAS 148

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 29/142 (20%), Positives = 40/142 (28%), Gaps = 5/142 (3%)

Query: 419 VPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPM 478
           V    VP  +          PT  P  +  PP  Q  PP    P + P P    P   P 
Sbjct: 32  VGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPP--TEPETPPEPTPPKPKEKPK 89

Query: 479 PSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPP 538
           P      P         P     P  +   PPS   + +   P     P  PP  +    
Sbjct: 90  PEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAP---NQPARPPSAASASG 146

Query: 539 VRSSPPPTPSLSPPPPVQSPPP 560
             + P  +        ++  P 
Sbjct: 147 AATGPSASYLSGLRRAIRRAPR 168

Length = 244

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 17/111 (15%), Positives = 20/111 (18%)

Query: 514 PSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVR 573
            S SS         P             S   +          SPP  SP          
Sbjct: 3   ASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSF 62

Query: 574 SPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPP 624
                 P+            SP   SP            +      SP   
Sbjct: 63  GLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRS 113

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 575 PPPSSPTPSPSPSPPPPIQSP-PPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           P P+ P+P+ +P+PPPP ++  P T    P  + P   +      +    P P   
Sbjct: 17  PAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Length = 475

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 25/111 (22%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 502 PPVRSPPPPSPMPSPSS-PPPVYSPPPPSPPPVSYPPPVR-----SSPPPTPSLSPPPPV 555
                P P      P   P  V     P+ PP      ++     ++    P     PPV
Sbjct: 40  AIPLPPKPQGDRDEPRVLPAVVQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPV 99

Query: 556 QSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
           +S P   P     P PV+ P        P+   P P   P       P G 
Sbjct: 100 ESTPAGVPVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAAPTGQ 150

Length = 226

>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 565 PVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPP 616
           P  Y  P  S    + T  PS     P  S PPT   P    P  P ++P  
Sbjct: 138 PAEYYSPKHSSSQGTSTTRPSDGSATPNTSAPPTPGNPA-AQPEKPAETPKG 188

This family of proteins is found in eukaryotes. Proteins in this family are typically between 263 and 318 amino acids in length. There is a conserved SFT sequence motif. MSA-2 is a plasma membrane glycoprotein which can be found in Babesia bovis species. Length = 201

>gnl|CDD|223064 PHA03375, PHA03375, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 23/117 (19%), Positives = 25/117 (21%), Gaps = 22/117 (18%)

Query: 534 SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP----- 588
           S    V   P      +PPP    P P S           S  P   T  PS  P     
Sbjct: 368 SLDDNVGGRPRTARLSAPPPSAAPPVPRSGSSPSSLSSSSSSAPPPAT-DPSSDPTRRYV 426

Query: 589 ---------------PPPIQSPPPTSPPP-PVGSPPPPIQSPPPPVQSPPPPSPPPP 629
                                P     P  P   P    +     V  P P     P
Sbjct: 427 RIISRLSFVRYRERLRRRAADPAFDFTPQRPRRRPLAHRREESLAVDGPAPDRRKVP 483

Length = 844

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 37/125 (29%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 353 SKPVDCSKDECSWG-GSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTP 411
           S P +      +W   +P S  SAP  + +++T     K P+ AP TP+ P    A  T 
Sbjct: 333 SSPAETKASTAAWKIRNPLSRTSAPAVRIASATFRGLEKNPSTAPSTPATPRVR-AVLTT 391

Query: 412 PTWEWNRVPRH--KVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSP---PPVSYP 466
                     H   V P    P  P SP+ TT    + P P   + PP  P   P   YP
Sbjct: 392 QV-------HHCVVVKPAPAVPTTP-SPSLTTALFPEAPSPSPSALPPGQPDLHPKAEYP 443

Query: 467 PPVRS 471
           P + S
Sbjct: 444 PDLFS 448

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 18/52 (34%), Positives = 22/52 (42%)

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPP 596
           P+ S +P  P   P PP P       P  SP P +  PS  PS    I + P
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASP 253

Length = 539

>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 15/60 (25%), Positives = 24/60 (40%)

Query: 471 SAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSP 530
           + P  + + +P S PP+     P   P +  PP      P   P+ ++P       P SP
Sbjct: 31  TTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQSP 90

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	629
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.8
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.56
PLN03150	623	hypothetical protein; Provisional	99.54
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.45
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.38
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.37
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.36
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	99.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
PLN03150	623	hypothetical protein; Provisional	99.07
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.75
KOG4341	483	consensus F-box protein containing LRR [General fu	98.74
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.52
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.36
PHA03247	3151	large tegument protein UL36; Provisional	98.19
KOG4341	483	consensus F-box protein containing LRR [General fu	98.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.14
PRK15386	426	type III secretion protein GogB; Provisional	98.08
PHA03247	3151	large tegument protein UL36; Provisional	98.06
PRK15386	426	type III secretion protein GogB; Provisional	98.04
KOG4308	478	consensus LRR-containing protein [Function unknown	97.93
KOG4308	478	consensus LRR-containing protein [Function unknown	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.86
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.76
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.45
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.34
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.32
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.12
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	97.08
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	96.74
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	96.62
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.29
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.04
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.6
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	95.48
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	95.28
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.81
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.58
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.05
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.91
smart00370	26	LRR Leucine-rich repeats, outliers.	90.91
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.72
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.28
smart00370	26	LRR Leucine-rich repeats, outliers.	87.7
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.7
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	87.38
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	87.3
PRK09718	512	hypothetical protein; Validated	87.13
PRK09718	512	hypothetical protein; Validated	83.85
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	80.54

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-32  Score=326.41  Aligned_cols=288  Identities=29%  Similarity=0.466  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCC-CCCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCC
Q 043930           39 MAYVGLQAFKKAIYSDPYNHTENWV-GTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANT  117 (629)
Q Consensus        39 ~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  117 (629)
                      .+..+|++|+..+ .+....+.+|. ..++|.|.|+.|+.     ..+++.|||++|++.+.+...|..+++|++|+|++
T Consensus        29 ~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~c~w~gv~c~~-----~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~  102 (968)
T PLN00113         29 EELELLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNN-----SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN  102 (968)
T ss_pred             HHHHHHHHHHHhC-CCCcccCCCCCCCCCCCcCcceecCC-----CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence            5667899999887 35566778896 46899999999973     34688888888888888888888888888888888


Q ss_pred             CCCCccChhhhc-CCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccccC
Q 043930          118 NRLCGIIPETFA-NMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSI  195 (629)
Q Consensus       118 n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~  195 (629)
                      |++.+.++..+. ++.+|++|+|++|++++.++.  ..+.+|++|+|++|.+++.++..+.. .+|++|+|++|.+.+.+
T Consensus       103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~  180 (968)
T PLN00113        103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI  180 (968)
T ss_pred             CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence            888766665543 777777777777776654442  33555555555555555555544443 55555555555555555


Q ss_pred             chhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhc
Q 043930          196 PETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN  274 (629)
Q Consensus       196 ~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  274 (629)
                      +..++. .+|++|+|++|.+.+.++..|+++.+|++|+|++|++.+.++..++  ++.+|++|+|++|++++.++..|.+
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~  258 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNNLTGPIPSSLGN  258 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcCceeccccChhHhC
Confidence            554443 3455555555555555555555555555555555555555554444  4555555555555555444445555


Q ss_pred             ccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          275 LNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       275 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      +.+|++|+|++|.+.+.++..+.++.+|++|+|++|.+.+..+..+.++.+|++|++++|.+
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence            55555555555555444444444444444444444444444444444444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=2e-31  Score=316.23  Aligned_cols=255  Identities=25%  Similarity=0.414  Sum_probs=155.9

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      +.+|+.|+|++|.+.+.++..|+++++|++|+|++|++.+.++..|+++.+|++|+|++|.+.+.++..+.++.+|++|+
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555556666


Q ss_pred             ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930          163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG  240 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  240 (629)
                      |++|++++.++..+.. .+|++|+|++|.+.+.++..++. .+|++|+|++|.+.+.++..|.++.+|++|+|++|.+.+
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG  322 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence            6555555555554444 55666666666655555555443 356666666666665666666666666666666666665


Q ss_pred             cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhh
Q 043930          241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECI  320 (629)
Q Consensus       241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l  320 (629)
                      .++..+.  .+.+|++|+|++|.+++.++..+..+.+|+.|+|++|++.+.++..++.+.+|+.|+|++|.+.+..+..+
T Consensus       323 ~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~  400 (968)
T PLN00113        323 KIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL  400 (968)
T ss_pred             cCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence            5555555  56666666666666666666666666666666666666666666666666666667777776666666667


Q ss_pred             cCCCCCceecccCCccccc
Q 043930          321 SGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       321 ~~l~~L~~L~l~~N~l~~~  339 (629)
                      ..+.+|+.|++++|.+++.
T Consensus       401 ~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        401 GACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             hCCCCCCEEECcCCEeeeE
Confidence            7777777777777776643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=9.7e-32  Score=274.89  Aligned_cols=333  Identities=16%  Similarity=0.177  Sum_probs=259.8

Q ss_pred             CCCCCCcchhhhcCCCcccccchhhhHHH-HHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEc
Q 043930           13 KDGKLPNDFEDQYDLKDKTFESHRMKMAY-VGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDL   91 (629)
Q Consensus        13 ~~~~i~~~l~~l~~L~~L~ls~~~l~~~~-~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L   91 (629)
                      +...||.+.+...+|+.|+|.+|.+.... ..|..+......|...++.......        |  +.  ...+|++|+|
T Consensus       113 ~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~--------s--fp--~~~ni~~L~L  180 (873)
T KOG4194|consen  113 ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP--------S--FP--AKVNIKKLNL  180 (873)
T ss_pred             hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC--------C--CC--CCCCceEEee
Confidence            34566766666666777788777775442 2233333222222221111111000        1  00  2346999999


Q ss_pred             CCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccC
Q 043930           92 NKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGE  171 (629)
Q Consensus        92 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  171 (629)
                      ++|+|+.+-...|..|.+|..|.|++|+|+..-...|.+|.+|+.|+|..|+|.-.---.|.++.+|+.|.|..|+|. .
T Consensus       181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-k  259 (873)
T KOG4194|consen  181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-K  259 (873)
T ss_pred             ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-c
Confidence            999999988899999999999999999999888889999999999999999998644567889999999999999998 7


Q ss_pred             CCchhcc--CCCCEEEecCccccccCchhh-hhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCccccc
Q 043930          172 LPPELFQ--TGLDIIFLNHNWFRGSIPETI-GESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGS  248 (629)
Q Consensus       172 ip~~~~~--~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  248 (629)
                      +.+..|-  .++++|+|..|++...-..++ +...|+.|+|++|.|...-.+.|..+.+|++|+|++|+|+..-...|. 
T Consensus       260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~-  338 (873)
T KOG4194|consen  260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR-  338 (873)
T ss_pred             ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH-
Confidence            7777766  899999999999985544444 457899999999999988888999999999999999999955555666 


Q ss_pred             CCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccc---ccccCCCCCcEEEecCCccCCcchhhhcCCCC
Q 043930          249 GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVS---ADICKLPHLLNFTFSNNFFQGMAMECISGSRD  325 (629)
Q Consensus       249 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~  325 (629)
                       .|..|++|+|++|.|+..-...|..+.+|++|||++|.|...+.   ..|.+|.+|+.|+|.||+|..+....|.++..
T Consensus       339 -~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~  417 (873)
T KOG4194|consen  339 -VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA  417 (873)
T ss_pred             -HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcc
Confidence             78999999999999997777889999999999999999886544   35778999999999999999999999999999


Q ss_pred             CceecccCCccccccccCC---CCCCCCCCCCCCCCCC
Q 043930          326 DVYFEEKGNCLAEMEYQKL---PTECYPVVSKPVDCSK  360 (629)
Q Consensus       326 L~~L~l~~N~l~~~~~~~~---~~~c~~~~~~p~~Cs~  360 (629)
                      |+.|||.+|-|..+....+   ...-..+.+..+-|+|
T Consensus       418 LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  418 LEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC  455 (873)
T ss_pred             cceecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence            9999999998876544333   2233344445556665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=3.8e-30  Score=263.30  Aligned_cols=256  Identities=18%  Similarity=0.182  Sum_probs=164.5

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      ...+|+.|+|.+|.|..+--+++..+..|+.|||+.|.|..+--..|..-.+|++|+|++|+|+......|..+.+|..|
T Consensus       123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl  202 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL  202 (873)
T ss_pred             cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence            34567777777777776666667777777777777777765544556555667777777777766666666666677777


Q ss_pred             EccCCcCccCCCchhcc--CCCCEEEecCcccccc------------------------Cchhh-hhhhhHHHHhcCCcc
Q 043930          162 DLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGS------------------------IPETI-GESLARYIVLSSNNF  214 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~------------------------~~~~~-~~~~L~~L~l~~n~l  214 (629)
                      .|++|+|+ .++...|.  .+|+.|+|..|+|.-.                        -...| +..++++|+|..|++
T Consensus       203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             ecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            77777776 66666665  6677777777766522                        11111 112355555555555


Q ss_pred             cccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccc
Q 043930          215 TGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSA  294 (629)
Q Consensus       215 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  294 (629)
                      ...--.++.+|+.|+.|+|++|.|.....+.|.  .+.+|++|+|++|+|+......|..|..|++|+|++|.|+.+-..
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~  359 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS--FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG  359 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhheeecchhh--hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence            544445555566666666666666655455554  456677777777777666666666777777777777777665555


Q ss_pred             cccCCCCCcEEEecCCccCCcch---hhhcCCCCCceecccCCcccccc
Q 043930          295 DICKLPHLLNFTFSNNFFQGMAM---ECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       295 ~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      .|..+.+|++|||++|.|...+.   ..|.++.+|++|+|.||+|..+.
T Consensus       360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~  408 (873)
T KOG4194|consen  360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP  408 (873)
T ss_pred             HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence            66677777777777777665543   34666777777777777776443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=2.2e-28  Score=251.66  Aligned_cols=305  Identities=21%  Similarity=0.302  Sum_probs=216.5

Q ss_pred             CCCCCcchhhhcCCCcccccchhhhHHHHHHH---HHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEE
Q 043930           14 DGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQ---AFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMID   90 (629)
Q Consensus        14 ~~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~---~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~   90 (629)
                      ...|++.++.|.+|+.|.+++|++......|.   .++..+..+           +.....|+--+.+   .+..|+.||
T Consensus        44 L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~-----------N~LKnsGiP~diF---~l~dLt~lD  109 (1255)
T KOG0444|consen   44 LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD-----------NNLKNSGIPTDIF---RLKDLTILD  109 (1255)
T ss_pred             hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc-----------cccccCCCCchhc---ccccceeee
Confidence            35677777777777777777777655443332   233222221           1112233333332   456678888


Q ss_pred             cCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCcc
Q 043930           91 LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEG  170 (629)
Q Consensus        91 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  170 (629)
                      |++|++. +.+..+.+.+++-.|+|++|+|..+-...|.+|+.|-+|||++|++.. ++..+..+..|+.|+|++|.+..
T Consensus       110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhH
Confidence            8888874 467777778888888888888876555667788888888888888876 66667788888888888887641


Q ss_pred             CCCchh-ccCCCCEEEecCcccc-ccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccc
Q 043930          171 ELPPEL-FQTGLDIIFLNHNWFR-GSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIG  247 (629)
Q Consensus       171 ~ip~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  247 (629)
                      ---..+ ..++|++|.+++.+-+ ..++..+.. .+|..+||+.|++. .+++.+.++.+|+.|+|++|.|+ .+-..++
T Consensus       188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~  265 (1255)
T KOG0444|consen  188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG  265 (1255)
T ss_pred             HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH
Confidence            100111 1166777777776543 235555544 57888999999888 77888888999999999999998 4444444


Q ss_pred             cCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccc-cccccccCCCCCcEEEecCCccCCcchhhhcCCCCC
Q 043930          248 SGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG-FVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDD  326 (629)
Q Consensus       248 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L  326 (629)
                        ...+|++|+|++|+|+ .++..++.|++|+.|.+.+|+++- -++..+++|.+|+.+...+|+|. ++++.++.|.+|
T Consensus       266 --~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL  341 (1255)
T KOG0444|consen  266 --EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL  341 (1255)
T ss_pred             --HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence              5678999999999998 788899999999999999998752 25677888888888888888775 567888888999


Q ss_pred             ceecccCCcccccc
Q 043930          327 VYFEEKGNCLAEME  340 (629)
Q Consensus       327 ~~L~l~~N~l~~~~  340 (629)
                      +.|.|++|++....
T Consensus       342 ~kL~L~~NrLiTLP  355 (1255)
T KOG0444|consen  342 QKLKLDHNRLITLP  355 (1255)
T ss_pred             HHhcccccceeech
Confidence            99999999876543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=3.6e-27  Score=242.73  Aligned_cols=304  Identities=19%  Similarity=0.245  Sum_probs=245.3

Q ss_pred             CCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCC
Q 043930           15 GKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKA   94 (629)
Q Consensus        15 ~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n   94 (629)
                      +.++.++..+++++.|.|...++......|..+.++......       ........|...      .+.+|+.+++.+|
T Consensus        22 ~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~-------HN~L~~vhGELs------~Lp~LRsv~~R~N   88 (1255)
T KOG0444|consen   22 DRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMA-------HNQLISVHGELS------DLPRLRSVIVRDN   88 (1255)
T ss_pred             CcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhh-------hhhhHhhhhhhc------cchhhHHHhhhcc
Confidence            457889999999999999988776665555555544321111       111112223222      4677999999999


Q ss_pred             Ccccc-CchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCC
Q 043930           95 EIAAH-LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELP  173 (629)
Q Consensus        95 ~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip  173 (629)
                      ++... |+.+|.+|+.|+.|||++|++. ..+..+..-+++-.|+|++|+|..+-...+.+++.|-+|||++|++. .++
T Consensus        89 ~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LP  166 (1255)
T KOG0444|consen   89 NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLP  166 (1255)
T ss_pred             ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcC
Confidence            98653 7889999999999999999998 57788999999999999999999866677889999999999999998 788


Q ss_pred             chhcc-CCCCEEEecCccccccCchhh-hhhhhHHHHhcCCcc-cccCCccccCCCCCcEEEccCCcccccCCcccccCC
Q 043930          174 PELFQ-TGLDIIFLNHNWFRGSIPETI-GESLARYIVLSSNNF-TGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE  250 (629)
Q Consensus       174 ~~~~~-~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~  250 (629)
                      ..+.. .+|+.|+|++|.+...--..+ ...+|+.|.+++.+- ...++..+..|.||..+||+.|++. .+++.+.  +
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly--~  243 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY--K  243 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh--h
Confidence            77766 899999999998764322222 225789999988654 3568889999999999999999998 8888888  8


Q ss_pred             CCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCc-chhhhcCCCCCcee
Q 043930          251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM-AMECISGSRDDVYF  329 (629)
Q Consensus       251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L  329 (629)
                      +.+|+.|+|++|+|+ .+-.....+.+|++|+|+.|+++ .++..+++|++|+.|.+.+|+|+-. ++..|.++..|+.+
T Consensus       244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf  321 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF  321 (1255)
T ss_pred             hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence            999999999999998 55556778889999999999999 4789999999999999999998643 57789999999999


Q ss_pred             cccCCcccc
Q 043930          330 EEKGNCLAE  338 (629)
Q Consensus       330 ~l~~N~l~~  338 (629)
                      ...+|.+.-
T Consensus       322 ~aanN~LEl  330 (1255)
T KOG0444|consen  322 HAANNKLEL  330 (1255)
T ss_pred             Hhhcccccc
Confidence            999998763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=3.2e-26  Score=225.37  Aligned_cols=244  Identities=20%  Similarity=0.296  Sum_probs=174.6

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCC---------------
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP---------------  147 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------  147 (629)
                      +.+|..|||.+|+++. .+++++.+++|.+||+++|.|++ ++.++++| +|++|-|.+|-+..+               
T Consensus       251 L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy  327 (565)
T KOG0472|consen  251 LNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKY  327 (565)
T ss_pred             cccceeeecccccccc-CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence            3445555555555532 45555555555555555555552 44455555 555555555533200               


Q ss_pred             --------------------------chhhhhCCCCCcEEEccCCcCccCCCchhcc----CCCCEEEecCccccccCch
Q 043930          148 --------------------------FPTVALTWKRNLYLDLRFNNFEGELPPELFQ----TGLDIIFLNHNWFRGSIPE  197 (629)
Q Consensus       148 --------------------------~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~----~~L~~L~L~~n~l~~~~~~  197 (629)
                                                .......+.+.++|++++-+++ .+++++|.    .-+..++++.|++. +++.
T Consensus       328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk  405 (565)
T KOG0472|consen  328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPK  405 (565)
T ss_pred             HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhh
Confidence                                      0001122345556666666665 67777766    23667777888777 5666


Q ss_pred             hhhhh-h-hHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcc
Q 043930          198 TIGES-L-ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL  275 (629)
Q Consensus       198 ~~~~~-~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  275 (629)
                      .+... . ++.+++++|.+. .++..++.+.+|..|+|++|-+. .+|..++  .+..|+.|||++|+|. .+++.+..+
T Consensus       406 ~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~--~lv~Lq~LnlS~NrFr-~lP~~~y~l  480 (565)
T KOG0472|consen  406 RLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMG--SLVRLQTLNLSFNRFR-MLPECLYEL  480 (565)
T ss_pred             hhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhh--hhhhhheecccccccc-cchHHHhhH
Confidence            65542 3 445556655555 78888999999999999999888 8898888  7888999999999998 889988889


Q ss_pred             cCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930          276 NNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       276 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      ..|+.+-.++|+|..+.+..+.++.+|.+|||.+|.|..+ +..+++|.+|++|++.||.|.
T Consensus       481 q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  481 QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence            9999999999999987777799999999999999999875 557999999999999999987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.89  E-value=9.5e-25  Score=235.21  Aligned_cols=246  Identities=22%  Similarity=0.310  Sum_probs=206.6

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      ...+|+++|+++|++.+ ++++++.+.+|+.|++.+|+|+ .++..+..+.+|++|++.+|+++. ++..+..++.|++|
T Consensus       239 ~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTL  315 (1081)
T ss_pred             ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeee
Confidence            56778999999999876 5688999999999999999996 577788888999999999999886 66667789999999


Q ss_pred             EccCCcCccCCCchhcc---CCCCEEEecCccccccCc-hhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCc
Q 043930          162 DLRFNNFEGELPPELFQ---TGLDIIFLNHNWFRGSIP-ETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQ  237 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~---~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  237 (629)
                      ||..|+|. .+++.++.   ..|+.|+.+.|++...-. +......|+.|++.+|.+++.....|.++.+|++|+|++|+
T Consensus       316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             eehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            99999997 88887666   457788888887763321 11122579999999999998888889999999999999999


Q ss_pred             ccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcch
Q 043930          238 LSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM  317 (629)
Q Consensus       238 l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  317 (629)
                      |. .+++.... ++..|++|+|++|+|+ .+++.+.++..|++|...+|.|.. .+ .+..+..|+.|||+.|+|+....
T Consensus       395 L~-~fpas~~~-kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l  469 (1081)
T KOG0618|consen  395 LN-SFPASKLR-KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTL  469 (1081)
T ss_pred             cc-cCCHHHHh-chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhh
Confidence            98 67766553 7899999999999999 788999999999999999999985 45 78899999999999999988766


Q ss_pred             hhhcCCCCCceecccCCcc
Q 043930          318 ECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       318 ~~l~~l~~L~~L~l~~N~l  336 (629)
                      ......++|++|||+||..
T Consensus       470 ~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  470 PEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhCCCcccceeeccCCcc
Confidence            5555558999999999974

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=3.7e-25  Score=217.88  Aligned_cols=245  Identities=23%  Similarity=0.349  Sum_probs=204.2

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      .+..++.|++.+|++.. ++.+++++..++.|++++|++. +++..++.+.+|..|++++|++.. ++..++.+..|+.|
T Consensus        66 nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl  142 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDL  142 (565)
T ss_pred             cccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhh
Confidence            45668888899988854 6778888889999999999888 677888888899999999998876 66778888889999


Q ss_pred             EccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930          162 DLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG  240 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  240 (629)
                      +..+|++. .++..++. .+|..|++.+|.+....+..+....|++||+..|.++ .++..++.|.+|+.|||..|+|. 
T Consensus       143 ~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-  219 (565)
T KOG0472|consen  143 DATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-  219 (565)
T ss_pred             hccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-
Confidence            99999988 67766665 7888889999998876677777778999999888777 78888999999999999999998 


Q ss_pred             cCCcccccCCCCCCcEEEecCCcccccchHHhh-cccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhh
Q 043930          241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA-NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMEC  319 (629)
Q Consensus       241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  319 (629)
                      .+| +|.  .|..|++|+++.|.|. .++.+++ ++.+|.+|||.+|+++. .++.++.+.+|++|||++|.|++. +..
T Consensus       220 ~lP-ef~--gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~L-p~s  293 (565)
T KOG0472|consen  220 FLP-EFP--GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSL-PYS  293 (565)
T ss_pred             cCC-CCC--ccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccccC-Ccc
Confidence            677 555  6888999999999998 5555554 88999999999999985 688899999999999999999875 445


Q ss_pred             hcCCCCCceecccCCccccc
Q 043930          320 ISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       320 l~~l~~L~~L~l~~N~l~~~  339 (629)
                      ++++ +|++|.+.||.+..+
T Consensus       294 Lgnl-hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGNPLRTI  312 (565)
T ss_pred             cccc-eeeehhhcCCchHHH
Confidence            7777 899999999988654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.86  E-value=2.5e-23  Score=224.39  Aligned_cols=224  Identities=22%  Similarity=0.312  Sum_probs=161.8

Q ss_pred             cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEe
Q 043930          108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFL  186 (629)
Q Consensus       108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L  186 (629)
                      .+|+++++++|++.+ +++.++.+.+|+.|++.+|+|+. ++..+..+.+|+.|++.+|++. .++..... +.|++|+|
T Consensus       241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhhc-chHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            355555555555553 33555556666666666665533 4444555556666666666665 45555443 77888888


Q ss_pred             cCccccccCchhhhh---hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc
Q 043930          187 NHNWFRGSIPETIGE---SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK  263 (629)
Q Consensus       187 ~~n~l~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~  263 (629)
                      ..|.|. .++..+..   ..|+.|+.+.|.+.......=..+..|+.|++.+|.+++..-..+.  +.++|++|+|++|+
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~--~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV--NFKHLKVLHLSYNR  394 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc--cccceeeeeecccc
Confidence            888877 44444433   3467777777777643322222356899999999999977655565  68999999999999


Q ss_pred             ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930          264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      |...-...+.+|..|++|+||||+++. ++..+.++..|++|...+|+|..+.  .+..+..|+.||+++|.|+...
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhh
Confidence            996666778899999999999999996 6788999999999999999998765  6888999999999999998543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=1.6e-22  Score=199.25  Aligned_cols=277  Identities=15%  Similarity=0.147  Sum_probs=162.3

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccC-CcCCCCchhhhhCCCCCcE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSN-NRLVGPFPTVALTWKRNLY  160 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~  160 (629)
                      .....+.|+|..|.|+.+-+.+|+.+++|+.|||++|+|+.+-+++|.++.+|..|.+.+ |+|+..-...|.++..|+.
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            344578899999999888888999999999999999999999999999999988887766 8998877778888999999


Q ss_pred             EEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhh-hhhhHHHHhcCCccc-c-----------cCCccccCC
Q 043930          161 LDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG-ESLARYIVLSSNNFT-G-----------CLPRSIGYM  225 (629)
Q Consensus       161 L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~-~-----------~~~~~l~~l  225 (629)
                      |.+.-|++. .+....|.  .+|..|.|.+|.+...--..+. ...++.+.+..|.+- +           ..+..+++.
T Consensus       145 LllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  145 LLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            999999887 66666665  7888888888887732221232 246677777666521 1           111222222


Q ss_pred             CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccch-HHhhcccCccceecccccccccccccccCCCCCcE
Q 043930          226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP-QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLN  304 (629)
Q Consensus       226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  304 (629)
                      ..+.-..|.++++..+-...+.. .++.+..--.+.+...++.+ ..|..|.+|++|+|++|+|+++...+|.++.+|++
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c-~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLC-SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhh-hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence            22333333333333111111110 11111111111222222222 33455555555555555555555555555555555


Q ss_pred             EEecCCccCCcchhhhcCCCCCceecccCCccccccccCCCC----CCCCCCCCCCCCCC
Q 043930          305 FTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPT----ECYPVVSKPVDCSK  360 (629)
Q Consensus       305 L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~----~c~~~~~~p~~Cs~  360 (629)
                      |.|.+|+|..+...+|.++..|+.|+|.+|+|+...+..+..    ....+..+++.|+|
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            555555555555555555555555555555555443322222    22344455555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.81  E-value=5.9e-22  Score=195.31  Aligned_cols=254  Identities=15%  Similarity=0.116  Sum_probs=166.6

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCC-CCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANT-NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLY  160 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  160 (629)
                      .+++|+.|||++|+|+.+-+++|..|..|..|.+.+ |+|+..--+.|++|..|+.|.+.-|++.-+..+.|..+.+|..
T Consensus        89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l  168 (498)
T KOG4237|consen   89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL  168 (498)
T ss_pred             chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence            457799999999999999999999999998887776 8999877889999999999999999999888899999999999


Q ss_pred             EEccCCcCccCCCchhcc--CCCCEEEecCcccccc------------Cchhhhh-hhhHHHHhcCCcccccCCccccC-
Q 043930          161 LDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGS------------IPETIGE-SLARYIVLSSNNFTGCLPRSIGY-  224 (629)
Q Consensus       161 L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~------------~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~-  224 (629)
                      |.|.+|.+. .+....|.  ..++.+.+..|.+...            .+..++. ....-..+.+.++...-...|.. 
T Consensus       169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~  247 (498)
T KOG4237|consen  169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS  247 (498)
T ss_pred             hcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence            999999998 77776665  7888888888873311            1111110 11112222222222221111111 


Q ss_pred             CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcE
Q 043930          225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLN  304 (629)
Q Consensus       225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  304 (629)
                      ++.+..-..+.+...+..+..-+ ..|.+|++|+|++|+|+++-..+|.++..|++|.|..|+|..+....|.++..|++
T Consensus       248 ~esl~s~~~~~d~~d~~cP~~cf-~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t  326 (498)
T KOG4237|consen  248 LESLPSRLSSEDFPDSICPAKCF-KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT  326 (498)
T ss_pred             HHhHHHhhccccCcCCcChHHHH-hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence            11111111222222222222221 25666666666666666655666666666666666666666555556666666666


Q ss_pred             EEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930          305 FTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       305 L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      |+|.+|+|+.+....|..+..|..|+|-+|.+.
T Consensus       327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             eeecCCeeEEEecccccccceeeeeehccCccc
Confidence            666666666666666666666666666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=2.2e-19  Score=201.14  Aligned_cols=232  Identities=24%  Similarity=0.339  Sum_probs=179.8

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      ...|+.|+|++|+|.. ++..+.  .+|++|+|++|+|++ ++..+.  .+|+.|+|++|+|.. ++..+.  .+|++|+
T Consensus       198 p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~  268 (754)
T PRK15370        198 PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRITE-LPERLP--SALQSLD  268 (754)
T ss_pred             ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEE
Confidence            3568999999999975 555443  589999999999984 555443  479999999999985 565553  5899999


Q ss_pred             ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930          163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL  242 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  242 (629)
                      |++|+|+ .++..+. .+|++|+|++|.|++ ++..+. ..|++|++++|++.+ ++..+.  .+|++|++++|.|+ .+
T Consensus       269 Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt-~L  340 (754)
T PRK15370        269 LFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALT-SL  340 (754)
T ss_pred             CcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCcccc-CCcccc--ccceeccccCCccc-cC
Confidence            9999998 6777654 589999999999984 454443 479999999999984 444332  68999999999998 46


Q ss_pred             CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcc---hhh
Q 043930          243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA---MEC  319 (629)
Q Consensus       243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~---~~~  319 (629)
                      +..+.    .+|+.|+|++|+|+ .++..+.  .+|++|+|++|.|++ ++..+.  ..|+.|++++|+|.++.   ...
T Consensus       341 P~~l~----~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~  410 (754)
T PRK15370        341 PASLP----PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPHF  410 (754)
T ss_pred             Chhhc----CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcccCchhHHHH
Confidence            65543    68999999999998 5665553  689999999999986 454443  36999999999998652   334


Q ss_pred             hcCCCCCceecccCCccccccc
Q 043930          320 ISGSRDDVYFEEKGNCLAEMEY  341 (629)
Q Consensus       320 l~~l~~L~~L~l~~N~l~~~~~  341 (629)
                      +..+..+..|+|.+|.|.....
T Consensus       411 ~~~~~~l~~L~L~~Npls~~tl  432 (754)
T PRK15370        411 RGEGPQPTRIIVEYNPFSERTI  432 (754)
T ss_pred             hhcCCCccEEEeeCCCccHHHH
Confidence            4556888999999999875433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.80  E-value=2.2e-20  Score=193.44  Aligned_cols=248  Identities=17%  Similarity=0.162  Sum_probs=129.1

Q ss_pred             EEEEEcCCCCcccc----CchhhhCCcCCCEEECCCCCCCc------cChhhhcCCCCCcEEEccCCcCCCCchhhhhCC
Q 043930           86 VAMIDLNKAEIAAH----LPPEMGWLLDLIYFHANTNRLCG------IIPETFANMHRLEEFDVSNNRLVGPFPTVALTW  155 (629)
Q Consensus        86 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l  155 (629)
                      |+.|+|.++.+...    +...+..+.+|++|+++++.+.+      .+...|..+.+|++|+|++|.+.+.....+..+
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  104 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL  104 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence            66666666665332    33344455566667666665541      123445556677777777766665444444444


Q ss_pred             CC---CcEEEccCCcCccCCCch----hcc--CCCCEEEecCccccccCchhhhh-----hhhHHHHhcCCccccc----
Q 043930          156 KR---NLYLDLRFNNFEGELPPE----LFQ--TGLDIIFLNHNWFRGSIPETIGE-----SLARYIVLSSNNFTGC----  217 (629)
Q Consensus       156 ~~---L~~L~Ls~n~l~~~ip~~----~~~--~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~L~l~~n~l~~~----  217 (629)
                      .+   |++|+|++|++.+.....    +..  .+|++|+|++|.+++.....+..     .+|++|++++|.+.+.    
T Consensus       105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  184 (319)
T cd00116         105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA  184 (319)
T ss_pred             hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence            44   777777776665211111    111  45666677666666432211111     1345555555554421    


Q ss_pred             CCccccCCCCCcEEEccCCcccccC----CcccccCCCCCCcEEEecCCcccccchHHhhc-----ccCccceecccccc
Q 043930          218 LPRSIGYMKELQEIILMENQLSGCL----PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN-----LNNIMRLDISDNML  288 (629)
Q Consensus       218 ~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l  288 (629)
                      +...+..+.+|++|+|++|.|++..    ...+.  .+.+|++|+|++|.+++.....+..     ...|++|+|++|.|
T Consensus       185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~--~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLA--SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc--ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence            1122334456777777776665322    12222  4566777777777666432222222     25667777777766


Q ss_pred             ccc----ccccccCCCCCcEEEecCCccCCc----chhhhcCC-CCCceecccCCc
Q 043930          289 TGF----VSADICKLPHLLNFTFSNNFFQGM----AMECISGS-RDDVYFEEKGNC  335 (629)
Q Consensus       289 ~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l-~~L~~L~l~~N~  335 (629)
                      ++.    +...+..+.+|++|++++|.+++.    ....+... ..|+.|++.+|.
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            521    122344456677777777776654    23333333 566666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.80  E-value=1.2e-20  Score=195.38  Aligned_cols=251  Identities=20%  Similarity=0.182  Sum_probs=187.4

Q ss_pred             EEEcCCCCccc-cCchhhhCCcCCCEEECCCCCCCcc----ChhhhcCCCCCcEEEccCCcCCC------CchhhhhCCC
Q 043930           88 MIDLNKAEIAA-HLPPEMGWLLDLIYFHANTNRLCGI----IPETFANMHRLEEFDVSNNRLVG------PFPTVALTWK  156 (629)
Q Consensus        88 ~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~l~~l~  156 (629)
                      .|+|..+.+.+ .....+..+.+|++|+|++|.+++.    +...+..+++|++|+++++.+.+      .+...+..+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            46777777763 3445667788899999999998543    45566778889999999998872      2334567788


Q ss_pred             CCcEEEccCCcCccCCCchhcc-C---CCCEEEecCccccccCchh----hhh--hhhHHHHhcCCccccc----CCccc
Q 043930          157 RNLYLDLRFNNFEGELPPELFQ-T---GLDIIFLNHNWFRGSIPET----IGE--SLARYIVLSSNNFTGC----LPRSI  222 (629)
Q Consensus       157 ~L~~L~Ls~n~l~~~ip~~~~~-~---~L~~L~L~~n~l~~~~~~~----~~~--~~L~~L~l~~n~l~~~----~~~~l  222 (629)
                      +|++|+|++|.+.+.....+.. .   +|++|+|++|.+++.....    +..  .+|++|++++|.+++.    +...|
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            9999999999997544444433 3   3999999999988533222    222  3689999999998843    34556


Q ss_pred             cCCCCCcEEEccCCcccccCC----cccccCCCCCCcEEEecCCccccc----chHHhhcccCccceecccccccccccc
Q 043930          223 GYMKELQEIILMENQLSGCLP----SEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNMLTGFVSA  294 (629)
Q Consensus       223 ~~l~~L~~L~Ls~n~l~~~~p----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~  294 (629)
                      ..+.+|++|+|++|.+++...    ..+.  .+.+|++|+|++|.|++.    +...+..+.+|++|+|++|.+++....
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLK--ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHH--hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            777899999999999985322    2233  457999999999999754    334556788999999999999864333


Q ss_pred             cccC-----CCCCcEEEecCCccCCc----chhhhcCCCCCceecccCCcccccc
Q 043930          295 DICK-----LPHLLNFTFSNNFFQGM----AMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       295 ~l~~-----l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      .+..     ..+|++|+|++|.+++.    ....+..+.+|++|++++|.+.+..
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG  294 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence            3322     47999999999999743    2345667789999999999999764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.78  E-value=6.5e-19  Score=210.36  Aligned_cols=238  Identities=19%  Similarity=0.185  Sum_probs=138.1

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL  163 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  163 (629)
                      .+|+.|+|++|.....++..|+++.+|++|+|++|...+.++..+ ++++|++|+|++|.....++.   ...+|++|+|
T Consensus       657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L  732 (1153)
T PLN03210        657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDL  732 (1153)
T ss_pred             CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeec
Confidence            344444444444334444444444445555554443222233222 344444555544433222221   1234445555


Q ss_pred             cCCcCccCCCchhccCCCCEEEecCcccccc---C---chh-h-hhhhhHHHHhcCCcccccCCccccCCCCCcEEEccC
Q 043930          164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGS---I---PET-I-GESLARYIVLSSNNFTGCLPRSIGYMKELQEIILME  235 (629)
Q Consensus       164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~---~---~~~-~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  235 (629)
                      ++|.+. .++..+...+|++|++.++.....   +   ... + ...+|+.|+|++|...+.++..|++|.+|++|+|++
T Consensus       733 ~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~  811 (1153)
T PLN03210        733 DETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN  811 (1153)
T ss_pred             CCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence            555544 444433334455555444221100   0   000 0 113678888888877777888888889999999988


Q ss_pred             CcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCc-cCC
Q 043930          236 NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF-FQG  314 (629)
Q Consensus       236 n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~  314 (629)
                      |...+.++..+   .+.+|++|+|++|.....++.   ...+|++|+|++|.|.. ++..+..+.+|++|+|++|. |.+
T Consensus       812 C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        812 CINLETLPTGI---NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             CCCcCeeCCCC---CccccCEEECCCCCccccccc---cccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCc
Confidence            76555676655   478889999988754434433   23578889999998875 57778888999999998854 444


Q ss_pred             cchhhhcCCCCCceecccCC
Q 043930          315 MAMECISGSRDDVYFEEKGN  334 (629)
Q Consensus       315 ~~~~~l~~l~~L~~L~l~~N  334 (629)
                       +...+..+.+|+.++++++
T Consensus       885 -l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        885 -VSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             -cCcccccccCCCeeecCCC
Confidence             4445667788888887765

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.78  E-value=3.6e-19  Score=198.29  Aligned_cols=220  Identities=20%  Similarity=0.240  Sum_probs=128.5

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL  163 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  163 (629)
                      .+|+.|+|++|+|+. ++.   ...+|++|+|++|.|.. ++.   .+.+|+.|+|++|+|+. ++.   ...+|++|+|
T Consensus       242 ~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdL  309 (788)
T PRK15387        242 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSV  309 (788)
T ss_pred             CCCcEEEecCCccCc-ccC---cccccceeeccCCchhh-hhh---chhhcCEEECcCCcccc-ccc---cccccceeEC
Confidence            457777777777764 332   23566777777776663 332   22456677777777664 332   2356777777


Q ss_pred             cCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      ++|+|+ .++..  ..+|+.|++++|.|++ ++...  .+|++|+|++|+|.+ ++..   ..+|+.|++++|+|. .++
T Consensus       310 S~N~L~-~Lp~l--p~~L~~L~Ls~N~L~~-LP~lp--~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP  378 (788)
T PRK15387        310 SDNQLA-SLPAL--PSELCKLWAYNNQLTS-LPTLP--SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLP  378 (788)
T ss_pred             CCCccc-cCCCC--cccccccccccCcccc-ccccc--cccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCc
Confidence            777776 44431  2456667777776663 33211  356677777777663 3322   245666677777666 344


Q ss_pred             cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS  323 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  323 (629)
                      ..     ..+|+.|+|++|+|++ ++..   ..+|+.|+|++|.|++ ++..   ..+|+.|+|++|+|+. +++.|.++
T Consensus       379 ~l-----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L  444 (788)
T PRK15387        379 AL-----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHL  444 (788)
T ss_pred             cc-----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhc
Confidence            32     2456777777777663 3322   2456777777777764 3332   2356667777777764 34556667


Q ss_pred             CCCceecccCCcccccc
Q 043930          324 RDDVYFEEKGNCLAEME  340 (629)
Q Consensus       324 ~~L~~L~l~~N~l~~~~  340 (629)
                      .+|+.|+|++|.|++..
T Consensus       445 ~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        445 SSETTVNLEGNPLSERT  461 (788)
T ss_pred             cCCCeEECCCCCCCchH
Confidence            77777777777776543

>PLN03210 Resistant to P

Probab=99.77  E-value=2.1e-18  Score=206.01  Aligned_cols=245  Identities=16%  Similarity=0.151  Sum_probs=162.5

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      ..+|+.|+|.+|++.. +...+..+.+|++|+|++|...+.++ .+..+.+|++|+|++|.....++..+.++.+|++|+
T Consensus       610 ~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            4567888888887754 45566778888888888765444454 367778888888888776666777788888888888


Q ss_pred             ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccc--------------------
Q 043930          163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSI--------------------  222 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l--------------------  222 (629)
                      |++|.....++..+...+|++|+|++|...+.++...  .+|++|+|++|.+. .++..+                    
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccc-cccccccccccccccccccchhhccc
Confidence            8876554567666655777777777775544443321  34566666666654 222211                    


Q ss_pred             ----------cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc
Q 043930          223 ----------GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV  292 (629)
Q Consensus       223 ----------~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  292 (629)
                                ....+|++|+|++|...+.++..++  ++.+|++|+|++|...+.++..+ ++.+|+.|+|++|.....+
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~--~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ--NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccccChhhh--CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence                      1124677777777766666777666  67777777777764333455444 5677777777777543333


Q ss_pred             cccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccC-Cccccc
Q 043930          293 SADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKG-NCLAEM  339 (629)
Q Consensus       293 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~-N~l~~~  339 (629)
                      +.   ...+|++|+|++|.|..+ +..+..+.+|++|+|++ |.+...
T Consensus       842 p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        842 PD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             cc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCcc
Confidence            32   235788888888888754 55678888999999887 455543

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=1.4e-18  Score=194.85  Aligned_cols=227  Identities=19%  Similarity=0.338  Sum_probs=178.2

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL  163 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  163 (629)
                      .+...|+|++++++. ++..+.  .+|++|+|++|+|+. ++..+.  .+|++|+|++|+|+. ++..+.  .+|++|+|
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence            457889999998875 555443  589999999999995 555443  589999999999986 555443  47999999


Q ss_pred             cCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      ++|+|. .++..+. .+|++|+|++|.|+ .++..+. .+|+.|+|++|+|++ ++..+.  .+|++|+|++|.++ .++
T Consensus       249 s~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP  320 (754)
T PRK15370        249 SINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALP  320 (754)
T ss_pred             cCCccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCC
Confidence            999998 7877654 68999999999998 4665554 479999999999984 444443  57999999999998 455


Q ss_pred             cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS  323 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  323 (629)
                      ..+    ..+|++|++++|.|++ ++..+.  .+|+.|+|++|+|+. ++..+  ..+|++|+|++|.|..+... +.  
T Consensus       321 ~~l----~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~~-l~--  387 (754)
T PRK15370        321 ETL----PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLPEN-LP--  387 (754)
T ss_pred             ccc----cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCHh-HH--
Confidence            544    3689999999999984 665553  689999999999985 45544  36899999999999976443 33  


Q ss_pred             CCCceecccCCcccccc
Q 043930          324 RDDVYFEEKGNCLAEME  340 (629)
Q Consensus       324 ~~L~~L~l~~N~l~~~~  340 (629)
                      ..|+.|++++|.|....
T Consensus       388 ~sL~~LdLs~N~L~~LP  404 (754)
T PRK15370        388 AALQIMQASRNNLVRLP  404 (754)
T ss_pred             HHHHHHhhccCCcccCc
Confidence            36999999999998653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.74  E-value=3.9e-18  Score=190.02  Aligned_cols=254  Identities=18%  Similarity=0.213  Sum_probs=183.4

Q ss_pred             CCCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCC
Q 043930           14 DGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNK   93 (629)
Q Consensus        14 ~~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~   93 (629)
                      ..+||+.+.  .+|+.|++.+|++......+            ..+...+ ...+.+..+.      ....+|+.|+|++
T Consensus       213 LtsLP~~l~--~~L~~L~L~~N~Lt~LP~lp------------~~Lk~Ld-Ls~N~LtsLP------~lp~sL~~L~Ls~  271 (788)
T PRK15387        213 LTTLPDCLP--AHITTLVIPDNNLTSLPALP------------PELRTLE-VSGNQLTSLP------VLPPGLLELSIFS  271 (788)
T ss_pred             CCcCCcchh--cCCCEEEccCCcCCCCCCCC------------CCCcEEE-ecCCccCccc------CcccccceeeccC
Confidence            446777664  47899999998876422100            0111100 1111222111      1245789999999


Q ss_pred             CCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCC
Q 043930           94 AEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELP  173 (629)
Q Consensus        94 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip  173 (629)
                      |.|.. ++.   .+.+|+.|+|++|+|+. ++.   .+.+|++|+|++|+|++ ++..   ..+|+.|++++|+|+ .++
T Consensus       272 N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP  338 (788)
T PRK15387        272 NPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLP  338 (788)
T ss_pred             Cchhh-hhh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccc
Confidence            99865 333   23678899999999984 343   35789999999999987 3332   346889999999998 666


Q ss_pred             chhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCC
Q 043930          174 PELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN  253 (629)
Q Consensus       174 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~  253 (629)
                      .  +..+|++|+|++|+|++ ++...  .+|+.|++++|.|.+ ++..   ..+|+.|+|++|.|+ .++..     ..+
T Consensus       339 ~--lp~~Lq~LdLS~N~Ls~-LP~lp--~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l-----~s~  403 (788)
T PRK15387        339 T--LPSGLQELSVSDNQLAS-LPTLP--SELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL-----PSE  403 (788)
T ss_pred             c--cccccceEecCCCccCC-CCCCC--cccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc-----ccC
Confidence            4  22689999999999994 44432  468889999999984 5543   357999999999998 45543     357


Q ss_pred             CcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhc
Q 043930          254 LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECIS  321 (629)
Q Consensus       254 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~  321 (629)
                      |+.|+|++|+|++ ++..   ..+|+.|+|++|+|+. ++..|+++.+|+.|+|++|.|++.....+.
T Consensus       404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             CCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence            9999999999984 5543   3468899999999985 688899999999999999999988666553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=2.3e-19  Score=157.86  Aligned_cols=150  Identities=27%  Similarity=0.468  Sum_probs=65.5

Q ss_pred             CCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEec
Q 043930          109 DLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLN  187 (629)
Q Consensus       109 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~  187 (629)
                      +++.|.|++|+++ .++..+..|.+|+.|++++|+|+. ++..+..+.+|++|+++-|++. .++..++. ..|++|||.
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            3444444444444 222334444444444444444443 3444444444444444444443 33333322 233333333


Q ss_pred             Cccccc-cCchh-hhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccc
Q 043930          188 HNWFRG-SIPET-IGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH  265 (629)
Q Consensus       188 ~n~l~~-~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~  265 (629)
                      +|.+.. .++.. |+...|+.|+|++|.+. .++..++++++|+.|.+.+|.+. .++..++  .+..|++|++.+|+++
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig--~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG--DLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH--HHHHHHHHhcccceee
Confidence            332221 12222 22334555555555554 44445555555555555555554 4444444  4455555555555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=5.3e-18  Score=149.34  Aligned_cols=160  Identities=26%  Similarity=0.481  Sum_probs=141.8

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      ...+++.|.|++|+++. ++..|..|++|+.|++.+|+|. .++..++.|.+|+.|+++-|++.. ++..|+.+..|++|
T Consensus        31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-CccccCCCchhhhh
Confidence            35678999999999965 6678999999999999999998 688899999999999999999875 88999999999999


Q ss_pred             EccCCcCcc-CCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930          162 DLRFNNFEG-ELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL  238 (629)
Q Consensus       162 ~Ls~n~l~~-~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  238 (629)
                      ||.+|++.. .++..+|. ..|+.|+|++|.|+ .++..++. .+|+.|.+.+|.+. .++..++.+..|++|++.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            999999874 46666666 88999999999998 77888887 58999999999988 6889999999999999999999


Q ss_pred             cccCCcccc
Q 043930          239 SGCLPSEIG  247 (629)
Q Consensus       239 ~~~~p~~~~  247 (629)
                      + .++..++
T Consensus       186 ~-vlppel~  193 (264)
T KOG0617|consen  186 T-VLPPELA  193 (264)
T ss_pred             e-ecChhhh
Confidence            8 7776665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.56  E-value=2.2e-16  Score=154.36  Aligned_cols=233  Identities=16%  Similarity=0.195  Sum_probs=126.8

Q ss_pred             CcccEEEEEcCCCCcccc----CchhhhCCcCCCEEECCCC---CCCccChh-------hhcCCCCCcEEEccCCcCCCC
Q 043930           82 QERFVAMIDLNKAEIAAH----LPPEMGWLLDLIYFHANTN---RLCGIIPE-------TFANMHRLEEFDVSNNRLVGP  147 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n---~l~~~~~~-------~~~~l~~L~~L~Ls~n~l~~~  147 (629)
                      ....++.|+|++|.|...    +...+.+.++|+..++++-   ++...++.       ++.++.+|++||||+|.|.-.
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            456689999999998654    3344566788888888763   23223333       345566899999999988643


Q ss_pred             ch----hhhhCCCCCcEEEccCCcCccCCCchh--------------c-cCCCCEEEecCccccccCchhhhhhhhHHHH
Q 043930          148 FP----TVALTWKRNLYLDLRFNNFEGELPPEL--------------F-QTGLDIIFLNHNWFRGSIPETIGESLARYIV  208 (629)
Q Consensus       148 ~~----~~l~~l~~L~~L~Ls~n~l~~~ip~~~--------------~-~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~  208 (629)
                      ..    ..+..+..|++|.|.+|.+. ......              . ..+|+++++.+|++.......+.        
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A--------  178 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA--------  178 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH--------
Confidence            33    34567888999999999875 222111              0 15677777777777644332222        


Q ss_pred             hcCCcccccCCccccCCCCCcEEEccCCccccc----CCcccccCCCCCCcEEEecCCccccc----chHHhhcccCccc
Q 043930          209 LSSNNFTGCLPRSIGYMKELQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMR  280 (629)
Q Consensus       209 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~  280 (629)
                                 ..|.....|+++.+..|.|...    +...+.  .+++|++|||.+|-|+..    +...+..|++|++
T Consensus       179 -----------~~~~~~~~leevr~~qN~I~~eG~~al~eal~--~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  179 -----------EAFQSHPTLEEVRLSQNGIRPEGVTALAEALE--HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             -----------HHHHhccccceEEEecccccCchhHHHHHHHH--hCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence                       2233334455555555544311    111122  445555555555544421    2233444555555


Q ss_pred             eeccccccccccccccc-----CCCCCcEEEecCCccCCc----chhhhcCCCCCceecccCCcc
Q 043930          281 LDISDNMLTGFVSADIC-----KLPHLLNFTFSNNFFQGM----AMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       281 L~Ls~N~l~~~~~~~l~-----~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      |++++|.+.......|.     ...+|++|+|.+|.|+..    +..++.....|+.|+|++|.+
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            55555555443332221     234555555555555432    122333345555555555555

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=6e-14  Score=156.95  Aligned_cols=152  Identities=20%  Similarity=0.280  Sum_probs=125.3

Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC----CcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCE
Q 043930           37 MKMAYVGLQAFKKAIYSDPYNHTENWVGTDVC----QYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIY  112 (629)
Q Consensus        37 l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c----~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  112 (629)
                      ...+..+|+.+|..+...   ...+|.+..|+    .|.|+.|..........++.|+|++|++.+.++..|++|.+|++
T Consensus       370 ~~~~~~aL~~~k~~~~~~---~~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~  446 (623)
T PLN03150        370 LLEEVSALQTLKSSLGLP---LRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS  446 (623)
T ss_pred             CchHHHHHHHHHHhcCCc---ccCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence            345677888888876321   12478775442    69999996432222346999999999999999999999999999


Q ss_pred             EECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCcc
Q 043930          113 FHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNW  190 (629)
Q Consensus       113 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~  190 (629)
                      |+|++|+|.|.++..|+.+.+|+.|+|++|+|.+.++..++++.+|++|+|++|+|+|.++..+..  .++..+++.+|.
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            999999999999999999999999999999999999999999999999999999999999988765  456677777665


Q ss_pred             c
Q 043930          191 F  191 (629)
Q Consensus       191 l  191 (629)
                      .
T Consensus       527 ~  527 (623)
T PLN03150        527 G  527 (623)
T ss_pred             c
Confidence            3

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.51  E-value=5.2e-15  Score=141.48  Aligned_cols=203  Identities=19%  Similarity=0.181  Sum_probs=135.8

Q ss_pred             hhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecC-ccccccCchhhhh-hhh
Q 043930          127 TFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNH-NWFRGSIPETIGE-SLA  204 (629)
Q Consensus       127 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~-n~l~~~~~~~~~~-~~L  204 (629)
                      .+..+++|+.+.++.+.-..+ -.....-..|+.|.+.+..+. ..+..+-...+..+.... ...+|..-..+.. ..|
T Consensus       209 ~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L  286 (490)
T KOG1259|consen  209 NLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTWQEL  286 (490)
T ss_pred             chHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence            344455566666665543321 111222345666666555443 222221112222222111 1122222222211 468


Q ss_pred             HHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930          205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS  284 (629)
Q Consensus       205 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  284 (629)
                      ++|||++|.|+ ++.++..-+.+++.|++++|.|. .+-. +.  .|.+|+.|||++|.++ .+..|-..|.|++.|.|+
T Consensus       287 telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La--~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  287 TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LA--ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hh--hcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            99999999998 67777888899999999999998 3332 54  6899999999999998 555677788999999999


Q ss_pred             cccccccccccccCCCCCcEEEecCCccCCcch-hhhcCCCCCceecccCCccccc
Q 043930          285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM-ECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      +|.|.+.  ..+.++-+|..||+++|+|..+.. ..|.++++|+.|.|.+|.|...
T Consensus       361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            9999753  457888999999999999987653 5788999999999999998754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.49  E-value=2.2e-15  Score=155.57  Aligned_cols=195  Identities=25%  Similarity=0.403  Sum_probs=155.6

Q ss_pred             CCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEE
Q 043930          106 WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIF  185 (629)
Q Consensus       106 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~  185 (629)
                      .+..-..+||+.|++. .++..+..+..|+.|.|..|.|.. ++..++++..|.+|||+.|++. .++..++.--|+.|.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli  149 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLI  149 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEE
Confidence            3555667888888888 577788888888999999988876 7788889999999999999998 888888888899999


Q ss_pred             ecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcc
Q 043930          186 LNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF  264 (629)
Q Consensus       186 L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l  264 (629)
                      +++|+++ .++..++. .+|..||++.|++. .++..++++.+|+.|++..|++. .++.++.   .-.|..||+++|+|
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~---~LpLi~lDfScNki  223 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC---SLPLIRLDFSCNKI  223 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh---CCceeeeecccCce
Confidence            9999988 67777764 47888999999887 56777888899999999999888 6777765   34688899999999


Q ss_pred             cccchHHhhcccCccceecccccccccccccccCCCC---CcEEEecCCc
Q 043930          265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH---LLNFTFSNNF  311 (629)
Q Consensus       265 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~---L~~L~L~~N~  311 (629)
                      . .++-.|.+|..|++|-|.+|-++. -+..+|...+   .++|+..-++
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence            8 788889999999999999998885 3444443322   4566666553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.48  E-value=6.1e-15  Score=144.39  Aligned_cols=209  Identities=16%  Similarity=0.178  Sum_probs=135.9

Q ss_pred             cccEEEEEcCCC---CccccCchhh-------hCCcCCCEEECCCCCCCcc----ChhhhcCCCCCcEEEccCCcCCCCc
Q 043930           83 ERFVAMIDLNKA---EIAAHLPPEM-------GWLLDLIYFHANTNRLCGI----IPETFANMHRLEEFDVSNNRLVGPF  148 (629)
Q Consensus        83 ~~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~  148 (629)
                      .+.|+..++++-   ++...++..+       ....+|++|||++|.|.-.    +.+.+..+..|++|+|.||.+.-..
T Consensus        57 ~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a  136 (382)
T KOG1909|consen   57 KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA  136 (382)
T ss_pred             cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH
Confidence            457888888764   2233344333       3445899999999988633    3345677899999999999886322


Q ss_pred             hh-------------hhhCCCCCcEEEccCCcCccCCCchh---cc--CCCCEEEecCccccccCchhhhhhhhHHHHhc
Q 043930          149 PT-------------VALTWKRNLYLDLRFNNFEGELPPEL---FQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLS  210 (629)
Q Consensus       149 ~~-------------~l~~l~~L~~L~Ls~n~l~~~ip~~~---~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~  210 (629)
                      -.             .+..-.+|++++..+|++.......+   ++  ..|+.+.+..|.|......             
T Consensus       137 g~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~-------------  203 (382)
T KOG1909|consen  137 GGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT-------------  203 (382)
T ss_pred             HHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhH-------------
Confidence            22             22345689999999999974333322   22  6899999999888743321             


Q ss_pred             CCcccccCCccccCCCCCcEEEccCCccccc----CCcccccCCCCCCcEEEecCCcccccchHHhh-----cccCccce
Q 043930          211 SNNFTGCLPRSIGYMKELQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA-----NLNNIMRL  281 (629)
Q Consensus       211 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L  281 (629)
                            .+...|.++++|++|||.+|.|+..    +...+.  .+++|++|++++|.+.......|.     ...+|++|
T Consensus       204 ------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~--s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl  275 (382)
T KOG1909|consen  204 ------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS--SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVL  275 (382)
T ss_pred             ------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc--ccchheeecccccccccccHHHHHHHHhccCCCCcee
Confidence                  1223566677888888888877632    222333  456778888888877654433332     24678888


Q ss_pred             eccccccccc----ccccccCCCCCcEEEecCCcc
Q 043930          282 DISDNMLTGF----VSADICKLPHLLNFTFSNNFF  312 (629)
Q Consensus       282 ~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l  312 (629)
                      .|.+|.|+..    +...+.....|+.|+|++|.+
T Consensus       276 ~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  276 ELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            8888877643    222334567788888888888

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.4e-14  Score=145.57  Aligned_cols=209  Identities=17%  Similarity=0.137  Sum_probs=114.2

Q ss_pred             hCCcCCCEEECCCCCCCccCh-hhhcCCCCCcEEEccCCcCCCC--chhhhhCCCCCcEEEccCCcCccCCCchhcc--C
Q 043930          105 GWLLDLIYFHANTNRLCGIIP-ETFANMHRLEEFDVSNNRLVGP--FPTVALTWKRNLYLDLRFNNFEGELPPELFQ--T  179 (629)
Q Consensus       105 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~  179 (629)
                      .++++|+++.|.++.+....- .....|.+++.|||+.|-|...  +...+..+++|+.|+|+.|++..-+....-.  .
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            456666776776665542211 3455666777777777765432  2334455677777777777765222222211  6


Q ss_pred             CCCEEEecCccccccCchhhhh--hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEE
Q 043930          180 GLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVF  257 (629)
Q Consensus       180 ~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L  257 (629)
                      .|+.|.|+.|.|+......+..  .+|+.|+|..|............+..|++|||++|++. ........+.+++|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence            6777777777766322222211  35677777777433233334445566777777777765 33322222356777777


Q ss_pred             EecCCcccccc-h-----HHhhcccCccceeccccccccc-ccccccCCCCCcEEEecCCccCC
Q 043930          258 DIRSNKFHGSV-P-----QSFANLNNIMRLDISDNMLTGF-VSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       258 ~Ls~n~l~~~~-~-----~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      +++.|.+.+.- +     +....+.+|+.|++..|.|.+. ....+..+.+|+.|.+..|.|+.
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            77777665321 1     1123456677777777776431 11233445566666666666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.45  E-value=1.5e-15  Score=156.71  Aligned_cols=178  Identities=25%  Similarity=0.419  Sum_probs=156.5

Q ss_pred             cCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHH
Q 043930          129 ANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYI  207 (629)
Q Consensus       129 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L  207 (629)
                      ..+..-...||+.|++.. ++..++.+..|+.|.|+.|.|. .|+..+.. ..|.+|||+.|++. .++..++..-|+.|
T Consensus        72 ~~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvl  148 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVL  148 (722)
T ss_pred             ccccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeE
Confidence            456667789999999986 8888999999999999999998 88888877 88999999999998 77888888899999


Q ss_pred             HhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccc
Q 043930          208 VLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNM  287 (629)
Q Consensus       208 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  287 (629)
                      .+++|+++ .++..++.+.+|..||.+.|.|. .++..++  ++.+|+.|++..|++. .++..++.| .|..||+++|+
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~--~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk  222 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG--YLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK  222 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh--hHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence            99999998 78888998899999999999998 7888887  7999999999999998 677777755 48999999999


Q ss_pred             ccccccccccCCCCCcEEEecCCccCCcc
Q 043930          288 LTGFVSADICKLPHLLNFTFSNNFFQGMA  316 (629)
Q Consensus       288 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  316 (629)
                      |.. ++..|++|.+|++|-|.+|-|..-.
T Consensus       223 is~-iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  223 ISY-LPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             eee-cchhhhhhhhheeeeeccCCCCCCh
Confidence            985 7888999999999999999887643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.41  E-value=2.8e-13  Score=144.62  Aligned_cols=194  Identities=27%  Similarity=0.413  Sum_probs=148.7

Q ss_pred             EEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCC-CCcEEEccCCcCCCCchhhhhCCCCCcEEEccCC
Q 043930           88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMH-RLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN  166 (629)
Q Consensus        88 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  166 (629)
                      .|++..+.+...+ ..+..++.++.|++.+|.++. +......+. +|++|++++|.+.. ++..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence            5777777764332 345566889999999999884 555566664 89999999999886 4456888999999999999


Q ss_pred             cCccCCCchh-ccCCCCEEEecCccccccCchhhhhh-hhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCc
Q 043930          167 NFEGELPPEL-FQTGLDIIFLNHNWFRGSIPETIGES-LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPS  244 (629)
Q Consensus       167 ~l~~~ip~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  244 (629)
                      ++. .++... ...+|+.|++++|++. .++..++.. .|++|++++|.+. .+...+.++.++..|.+.+|++. .+..
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            998 777776 4488999999999998 666666444 5999999999644 34456777888888888888887 4345


Q ss_pred             ccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc
Q 043930          245 EIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV  292 (629)
Q Consensus       245 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  292 (629)
                      .+.  .+.+|++|++++|.++....  +..+.+|+.|++++|.+....
T Consensus       250 ~~~--~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         250 SIG--NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             hhc--cccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence            555  67889999999999884433  788889999999998887543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.38  E-value=4.5e-13  Score=143.04  Aligned_cols=196  Identities=28%  Similarity=0.388  Sum_probs=143.9

Q ss_pred             EEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCC-CCcEEEccCCcCccCCCchhcc-CCCCEEEecCc
Q 043930          112 YFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWK-RNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHN  189 (629)
Q Consensus       112 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n  189 (629)
                      .|++..|.+...+ ..+..++.++.|++.+|.++. +......+. +|++|++++|++. .++..+.. .+|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            6788888774322 345666889999999998886 555566664 8999999999987 66545544 88999999999


Q ss_pred             cccccCchhh-hhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc
Q 043930          190 WFRGSIPETI-GESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV  268 (629)
Q Consensus       190 ~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~  268 (629)
                      .+. .++... ....|+.|++++|++. .++..+..+.+|++|++++|.+. .+...+.  .+.+|..|.+.+|++.. +
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~--~~~~l~~l~l~~n~~~~-~  247 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS--NLKNLSGLELSNNKLED-L  247 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh--hcccccccccCCceeee-c
Confidence            888 445444 5567888888888888 45555556667888888888544 3444444  67888888888888773 3


Q ss_pred             hHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchh
Q 043930          269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAME  318 (629)
Q Consensus       269 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  318 (629)
                      ...+..+.+|+.|++++|.+..+..  +..+.+|+.|++++|.+......
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            5667788888888888888886433  77888888888888887765443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.37  E-value=1.4e-13  Score=131.83  Aligned_cols=202  Identities=17%  Similarity=0.182  Sum_probs=141.0

Q ss_pred             CCCCCcEEEccCC--------cCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhh
Q 043930          130 NMHRLEEFDVSNN--------RLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE  201 (629)
Q Consensus       130 ~l~~L~~L~Ls~n--------~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~  201 (629)
                      -+.+|++|.++..        -+...++..+..+++|+.+.++.+.-.....-.+....|+.|...+..+. ..+..+-.
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe  258 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ-DVPSLLPE  258 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccc-ccccccch
Confidence            3455666665542        22233344455677888888888876522222333478888888777655 22222222


Q ss_pred             hhhHHHHhcC-CcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccc
Q 043930          202 SLARYIVLSS-NNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMR  280 (629)
Q Consensus       202 ~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  280 (629)
                      ..+..+.... ....|.....+..+..|++|||++|.|+ ++.+++.  -+..++.|++++|.|+ .+ +.+..|.+|+.
T Consensus       259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvK--L~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~  333 (490)
T KOG1259|consen  259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVK--LAPKLRRLILSQNRIR-TV-QNLAELPQLQL  333 (490)
T ss_pred             hhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhh--hccceeEEecccccee-ee-hhhhhcccceE
Confidence            2332222222 2234444455666789999999999998 7777776  6799999999999998 33 34889999999


Q ss_pred             eecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930          281 LDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       281 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      |||++|.++.+ ..+-.++.++++|.|++|.|.+.  ..+.++-+|.+||+++|+|..++
T Consensus       334 LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ld  390 (490)
T KOG1259|consen  334 LDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELD  390 (490)
T ss_pred             eecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHH
Confidence            99999999864 44556789999999999998754  46777888999999999998765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=6.6e-14  Score=140.73  Aligned_cols=208  Identities=17%  Similarity=0.173  Sum_probs=153.3

Q ss_pred             cCCCCCcEEEccCCcCCCCch-hhhhCCCCCcEEEccCCcCccCCCchh--cc--CCCCEEEecCccccccCchhhhh--
Q 043930          129 ANMHRLEEFDVSNNRLVGPFP-TVALTWKRNLYLDLRFNNFEGELPPEL--FQ--TGLDIIFLNHNWFRGSIPETIGE--  201 (629)
Q Consensus       129 ~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~ip~~~--~~--~~L~~L~L~~n~l~~~~~~~~~~--  201 (629)
                      .++++|++..|+++.+..... .....|.+++.|||++|-|. .+-..+  ..  .+|+.|+|+.|++..........  
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            568899999999998875332 45778999999999999887 332222  11  89999999999987444333322  


Q ss_pred             hhhHHHHhcCCccccc-CCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc-hHHhhcccCcc
Q 043930          202 SLARYIVLSSNNFTGC-LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV-PQSFANLNNIM  279 (629)
Q Consensus       202 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~  279 (629)
                      ..|+.|.|+.|+|+.. +...+..+++|++|+|.+|...+.  .......+..|++|||++|++.+.. ...++.|+.|+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            5789999999999732 344456679999999999963222  2222225788999999999887432 23467889999


Q ss_pred             ceeccccccccccccc------ccCCCCCcEEEecCCccCCcc-hhhhcCCCCCceecccCCccccc
Q 043930          280 RLDISDNMLTGFVSAD------ICKLPHLLNFTFSNNFFQGMA-MECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       280 ~L~Ls~N~l~~~~~~~------l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      .|+++.|.|..+-...      ...+.+|++|++..|++.++. .+.+..+.+|+.|.+.+|.|...
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            9999999987642222      245689999999999997653 35667788899999999988744

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.32  E-value=2.5e-13  Score=145.51  Aligned_cols=241  Identities=19%  Similarity=0.190  Sum_probs=139.2

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL  163 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  163 (629)
                      ..+..+++..|.|.. +-..+..+++|++|++.+|+|..+ ...+..+.+|++|+|++|.|+..  ..+..+..|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence            344555566665543 223456667777777777777643 22256677777777777777653  33555566777777


Q ss_pred             cCCcCccCCCchhccCCCCEEEecCccccccCch-hhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930          164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPE-TIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL  242 (629)
Q Consensus       164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  242 (629)
                      ++|.|. .+...-...+|+.|++++|++...-.. .-....++.+++.+|.+...  ..+..+..+..+++.+|.+.. +
T Consensus       148 ~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~-~  223 (414)
T KOG0531|consen  148 SGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK-L  223 (414)
T ss_pred             ccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee-c
Confidence            777776 444333346677777777776633221 12335677777777776532  233444555555777777662 1


Q ss_pred             CcccccCCCCC--CcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCc---ch
Q 043930          243 PSEIGSGEYKN--LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM---AM  317 (629)
Q Consensus       243 p~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~---~~  317 (629)
                      -.. .  .+..  |+.|++++|.+.. +...+..+.++..|++.+|++...  ..+.....+..+.+.+|.+...   ..
T Consensus       224 ~~l-~--~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (414)
T KOG0531|consen  224 EGL-N--ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ  297 (414)
T ss_pred             cCc-c--cchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence            111 1  1222  6777777777762 224556667777777777777653  3344555666666666665532   11


Q ss_pred             h-hhcCCCCCceecccCCcccc
Q 043930          318 E-CISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       318 ~-~l~~l~~L~~L~l~~N~l~~  338 (629)
                      . .......++.+.+.+|.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  298 EYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             cccccccccccccccccCcccc
Confidence            1 14445666777777776654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=6e-12  Score=116.21  Aligned_cols=129  Identities=18%  Similarity=0.253  Sum_probs=53.1

Q ss_pred             chhhhhhhhHHHHhcCCcccccCCcccc-CCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHh-h
Q 043930          196 PETIGESLARYIVLSSNNFTGCLPRSIG-YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSF-A  273 (629)
Q Consensus       196 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~  273 (629)
                      ........+++|+|.+|.|...  +.++ .+.+|++|||++|.|+ .+. .+.  .+.+|++|+|++|+|+.. ...+ .
T Consensus        13 ~~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~--~L~~L~~L~L~~N~I~~i-~~~l~~   85 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLP--GLPRLKTLDLSNNRISSI-SEGLDK   85 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS--S---T-T------TT--EEE--SS---S--CHHHHH
T ss_pred             cccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-Ccc--ChhhhhhcccCCCCCCcc-ccchHH
Confidence            3333445677788888877743  3455 5789999999999998 443 344  689999999999999954 3344 4


Q ss_pred             cccCccceeccccccccccc-ccccCCCCCcEEEecCCccCCcc---hhhhcCCCCCceecc
Q 043930          274 NLNNIMRLDISDNMLTGFVS-ADICKLPHLLNFTFSNNFFQGMA---MECISGSRDDVYFEE  331 (629)
Q Consensus       274 ~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~---~~~l~~l~~L~~L~l  331 (629)
                      .+++|++|+|++|+|.+... ..+..+++|+.|+|.+|.++...   ...+..+++|+.||-
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            68999999999999976422 45678999999999999887542   345677899999984

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.25  E-value=4.7e-13  Score=143.38  Aligned_cols=238  Identities=19%  Similarity=0.149  Sum_probs=149.8

Q ss_pred             cEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEcc
Q 043930           85 FVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLR  164 (629)
Q Consensus        85 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  164 (629)
                      .++.++...+.+...--. ...+..++.|++..|.|.. +...+..+.+|++|++.+|.|... ...+..+.+|++|+|+
T Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLS  126 (414)
T ss_pred             hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecc
Confidence            345555555544332111 2456777778888888874 345578889999999999999873 2226778999999999


Q ss_pred             CCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCC-ccccCCCCCcEEEccCCcccccCC
Q 043930          165 FNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLP-RSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       165 ~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      +|+|+ .+...-....|+.|++.+|.|.. +...-....|+.+++++|++...-. . +..+.+|+.+++++|.+. .+.
T Consensus       127 ~N~I~-~i~~l~~l~~L~~L~l~~N~i~~-~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~  202 (414)
T KOG0531|consen  127 FNKIT-KLEGLSTLTLLKELNLSGNLISD-ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIE  202 (414)
T ss_pred             ccccc-cccchhhccchhhheeccCcchh-ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-ccc
Confidence            99997 44444344668888888888773 2222224567777777777764422 1 456677777777777776 221


Q ss_pred             cccccCCCCCCcEEEecCCcccccchHHhhcccC--ccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhc
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN--IMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECIS  321 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~  321 (629)
                       .+.  .+..+..+++..|.++...  .+..+..  |+.|++++|.+... ...+..+..++.|++.+|++...  ..+.
T Consensus       203 -~~~--~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~  274 (414)
T KOG0531|consen  203 -GLD--LLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLE  274 (414)
T ss_pred             -chH--HHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--cccc
Confidence             122  3455556677777776221  1222232  77788888877743 24566677777788877777654  2344


Q ss_pred             CCCCCceecccCCccc
Q 043930          322 GSRDDVYFEEKGNCLA  337 (629)
Q Consensus       322 ~l~~L~~L~l~~N~l~  337 (629)
                      ....+..+.+..|.+.
T Consensus       275 ~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  275 RLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccchHHHhccCcchhc
Confidence            4555666666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.23  E-value=1.2e-12  Score=123.96  Aligned_cols=238  Identities=17%  Similarity=0.201  Sum_probs=133.3

Q ss_pred             cccEEEEEcCCCCccccCch----hhhCCcCCCEEECCCCCC---Ccc-------ChhhhcCCCCCcEEEccCCcCCCCc
Q 043930           83 ERFVAMIDLNKAEIAAHLPP----EMGWLLDLIYFHANTNRL---CGI-------IPETFANMHRLEEFDVSNNRLVGPF  148 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l---~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~  148 (629)
                      ...++.+||++|.|...-..    .|.+-++|+..++++-..   .+.       +-.++.+|.+|+..+|++|.|....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            34577777777777554333    334456666666665321   111       1223455666777777777665443


Q ss_pred             hh----hhhCCCCCcEEEccCCcCcc----CCCchhcc----------CCCCEEEecCccccccCchhhhhhhhHHHHhc
Q 043930          149 PT----VALTWKRNLYLDLRFNNFEG----ELPPELFQ----------TGLDIIFLNHNWFRGSIPETIGESLARYIVLS  210 (629)
Q Consensus       149 ~~----~l~~l~~L~~L~Ls~n~l~~----~ip~~~~~----------~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~  210 (629)
                      +.    .+.+.+.|++|.|++|.+.-    .|...+|.          ..|+++++..|++... +...           
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng-s~~~-----------  176 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG-SKEL-----------  176 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-cHHH-----------
Confidence            33    33445666666666666531    11111111          3455555555554411 1000           


Q ss_pred             CCcccccCCccccCCCCCcEEEccCCcccccCCc---ccccCCCCCCcEEEecCCccccc----chHHhhcccCccceec
Q 043930          211 SNNFTGCLPRSIGYMKELQEIILMENQLSGCLPS---EIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDI  283 (629)
Q Consensus       211 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L  283 (629)
                             ....|..-.+|+++.|..|.|.-..-.   ..+...+.+|++|||.+|-|+..    +...++.+..|+.|.|
T Consensus       177 -------~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         177 -------SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             -------HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence                   001122225788888888887632111   11112567888888888887632    3455667788889999


Q ss_pred             cccccccccccccc------CCCCCcEEEecCCccCCcchhh------h-cCCCCCceecccCCccccc
Q 043930          284 SDNMLTGFVSADIC------KLPHLLNFTFSNNFFQGMAMEC------I-SGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       284 s~N~l~~~~~~~l~------~l~~L~~L~L~~N~l~~~~~~~------l-~~l~~L~~L~l~~N~l~~~  339 (629)
                      .+|.++......+.      ...+|..|.+.+|.+.+.....      . ..+.-|..|.+.||+|...
T Consensus       250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            88888765444331      2577888888888765432211      1 1456778888888988753

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=99.21  E-value=2.4e-13  Score=143.99  Aligned_cols=179  Identities=18%  Similarity=0.227  Sum_probs=97.9

Q ss_pred             hhhhcCCCCCcEEEccCCcCCCCchhhhhCC-CCCcEEEccCCcCc----------cCCCchhccCCCCEEEecCccccc
Q 043930          125 PETFANMHRLEEFDVSNNRLVGPFPTVALTW-KRNLYLDLRFNNFE----------GELPPELFQTGLDIIFLNHNWFRG  193 (629)
Q Consensus       125 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~----------~~ip~~~~~~~L~~L~L~~n~l~~  193 (629)
                      +-.+..+..|+.|.|+++.|..  ...+..+ ..|++|-. .|.+.          |.+....-=..|...++++|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence            4456677888888888887753  1112111 22333322 12111          11111111145666777777766 


Q ss_pred             cCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHh
Q 043930          194 SIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSF  272 (629)
Q Consensus       194 ~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  272 (629)
                      .+...+.. ..|+.|+|++|++..+  +.+..|.+|++|||++|.+. .++.. +...++ |+.|+|++|.++..  ..+
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l-~~~gc~-L~~L~lrnN~l~tL--~gi  250 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQL-SMVGCK-LQLLNLRNNALTTL--RGI  250 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-ccccc-chhhhh-heeeeecccHHHhh--hhH
Confidence            33333333 3577777777777654  26666777777777777776 33322 111233 77777777777632  346


Q ss_pred             hcccCccceeccccccccccc-ccccCCCCCcEEEecCCccCC
Q 043930          273 ANLNNIMRLDISDNMLTGFVS-ADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       273 ~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      .+|.+|+.|||++|-|.+.-. .-+..|..|+.|+|.||-|..
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            677777777777776664311 123345566777777776543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=2e-12  Score=123.93  Aligned_cols=227  Identities=16%  Similarity=0.158  Sum_probs=145.3

Q ss_pred             cccEEEEEcCCCCccccCchhhhCC--cCCCEEECCCCCCCcc-ChhhhcCC-CCCcEEEccCCcCCCC-chhhhhCCCC
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWL--LDLIYFHANTNRLCGI-IPETFANM-HRLEEFDVSNNRLVGP-FPTVALTWKR  157 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~-~~~~~~~l-~~L~~L~Ls~n~l~~~-~~~~l~~l~~  157 (629)
                      ....+.||+.+-.|.-   ..++.+  +.+..+.+....+... +.+.+.-+ .+|++|||++..|+.. +-..+..|.+
T Consensus       135 e~lW~~lDl~~r~i~p---~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~k  211 (419)
T KOG2120|consen  135 ESLWQTLDLTGRNIHP---DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSK  211 (419)
T ss_pred             ccceeeeccCCCccCh---hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHh
Confidence            4567889998877743   334433  3445555554433322 22333333 3699999999888742 3344677899


Q ss_pred             CcEEEccCCcCccCCCchhcc-CCCCEEEecCcc-ccccCchhhhh--hhhHHHHhcCCcccccCC-ccccCC-CCCcEE
Q 043930          158 NLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNW-FRGSIPETIGE--SLARYIVLSSNNFTGCLP-RSIGYM-KELQEI  231 (629)
Q Consensus       158 L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~-l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~-~~l~~l-~~L~~L  231 (629)
                      |+.|.|.++++.+.|...+.. .+|+.|+|+.+. |+......+..  ..|++|+|++|.+....- ..+.+. .+|+.|
T Consensus       212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL  291 (419)
T ss_pred             hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence            999999999998877777776 889999998763 44222222222  468888888887764422 112222 578888


Q ss_pred             EccCCccc--ccCCcccccCCCCCCcEEEecCC-cccccchHHhhcccCccceecccccccccccc---cccCCCCCcEE
Q 043930          232 ILMENQLS--GCLPSEIGSGEYKNLTVFDIRSN-KFHGSVPQSFANLNNIMRLDISDNMLTGFVSA---DICKLPHLLNF  305 (629)
Q Consensus       232 ~Ls~n~l~--~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~L  305 (629)
                      +|+|++-.  ...-..+. ..+.+|.+|||++| .|+......|.++..|++|.|+.|...  +++   .|...+.|.+|
T Consensus       292 NlsG~rrnl~~sh~~tL~-~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yL  368 (419)
T KOG2120|consen  292 NLSGYRRNLQKSHLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYL  368 (419)
T ss_pred             hhhhhHhhhhhhHHHHHH-HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEE
Confidence            88876421  11111222 26788999999887 456556667788888999999888643  333   34566888999


Q ss_pred             EecCCccCCc
Q 043930          306 TFSNNFFQGM  315 (629)
Q Consensus       306 ~L~~N~l~~~  315 (629)
                      |+.++.-++.
T Consensus       369 dv~g~vsdt~  378 (419)
T KOG2120|consen  369 DVFGCVSDTT  378 (419)
T ss_pred             EeccccCchH
Confidence            9888755543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=2.5e-11  Score=112.09  Aligned_cols=113  Identities=24%  Similarity=0.360  Sum_probs=45.9

Q ss_pred             ccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccc-cCCC
Q 043930          222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADI-CKLP  300 (629)
Q Consensus       222 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~  300 (629)
                      +.+..++++|+|.+|.|. .+. .++. .+.+|+.|||++|.|+..  +.|..+.+|++|+|++|+|+++. +.+ ..++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~-~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp   88 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGA-TLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLP   88 (175)
T ss_dssp             -----------------------S--T-T-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-T
T ss_pred             cccccccccccccccccc-ccc-chhh-hhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCC
Confidence            345567899999999998 443 4431 478999999999999843  36888999999999999999753 334 4689


Q ss_pred             CCcEEEecCCccCCcch-hhhcCCCCCceecccCCcccccc
Q 043930          301 HLLNFTFSNNFFQGMAM-ECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       301 ~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      +|++|+|++|+|.++.. ..+..+++|++|+|.+|.+++..
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence            99999999999987643 67888999999999999998543

>PLN03150 hypothetical protein; Provisional

Probab=99.07  E-value=1.6e-10  Score=129.42  Aligned_cols=108  Identities=20%  Similarity=0.392  Sum_probs=93.5

Q ss_pred             CcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEe
Q 043930          228 LQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTF  307 (629)
Q Consensus       228 L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  307 (629)
                      ++.|+|++|.+.|.++..+.  .+.+|++|+|++|+|++.++..+..+.+|+.|+|++|.|.+.+++.++++.+|+.|+|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            77899999999988988887  7899999999999999889988999999999999999999888988999999999999


Q ss_pred             cCCccCCcchhhhcCC-CCCceecccCCccc
Q 043930          308 SNNFFQGMAMECISGS-RDDVYFEEKGNCLA  337 (629)
Q Consensus       308 ~~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~  337 (629)
                      ++|.|.+.++..+..+ .++..+++.+|...
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccc
Confidence            9999998888777653 45667788877643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=5.1e-12  Score=121.22  Aligned_cols=183  Identities=15%  Similarity=0.087  Sum_probs=120.9

Q ss_pred             cccEEEEEcCCCCcccc-CchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCc-CCCC-chhhhhCCCCCc
Q 043930           83 ERFVAMIDLNKAEIAAH-LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNR-LVGP-FPTVALTWKRNL  159 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~  159 (629)
                      ..+|++|||++..|+.. +-..+..+.+|+.|.|.++++.+.+...+++..+|+.|+|+.+. |+.. +.-.+.+|+.|.
T Consensus       184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            35689999999888643 33446778899999999999998888999999999999999864 4321 233467899999


Q ss_pred             EEEccCCcCccCCCchhcc---CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCC
Q 043930          160 YLDLRFNNFEGELPPELFQ---TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMEN  236 (629)
Q Consensus       160 ~L~Ls~n~l~~~ip~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  236 (629)
                      +|+|++|.+.......+..   .+|+.|+|+++.-.      ++...+..              ....+.+|.+|||++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------l~~sh~~t--------------L~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------LQKSHLST--------------LVRRCPNLVHLDLSDS  323 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------hhhhHHHH--------------HHHhCCceeeeccccc
Confidence            9999999876544222222   66777777765422      11111111              1245677888888776


Q ss_pred             c-ccccCCcccccCCCCCCcEEEecCCcccccchHH---hhcccCccceeccccccc
Q 043930          237 Q-LSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS---FANLNNIMRLDISDNMLT  289 (629)
Q Consensus       237 ~-l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~N~l~  289 (629)
                      . ++......|.  ++..|++|.|+.|..  ++++.   |...+.|.+||+-++-=.
T Consensus       324 v~l~~~~~~~~~--kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  324 VMLKNDCFQEFF--KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             cccCchHHHHHH--hcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence            5 3333333444  577788888888754  33433   344567788887766443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.05  E-value=3e-10  Score=130.14  Aligned_cols=254  Identities=15%  Similarity=0.182  Sum_probs=158.1

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      .+..|+.|||++|.-.+.+|..|+.|-+|++|+|++..+. .++..|.+|+.|.+|++.++.....++..+..+.+|++|
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            4677999999998777889999999999999999999998 688899999999999999887766666777779999999


Q ss_pred             EccCCcCc--cCCCchhcc-CCCCEEEecCccccccCchhhhhhh----hHHHHhcCCcccccCCccccCCCCCcEEEcc
Q 043930          162 DLRFNNFE--GELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESL----ARYIVLSSNNFTGCLPRSIGYMKELQEIILM  234 (629)
Q Consensus       162 ~Ls~n~l~--~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  234 (629)
                      .|......  ...-.++.. .+|+.|.+..... ..+-...+...    .+.+.+.++... .....+..+.+|+.|.+.
T Consensus       648 ~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~  725 (889)
T KOG4658|consen  648 RLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSIL  725 (889)
T ss_pred             EeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEE
Confidence            98776522  111111211 4555555543332 01111122222    334444333332 344567788999999999


Q ss_pred             CCcccccCCcccccC---C-CCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCC
Q 043930          235 ENQLSGCLPSEIGSG---E-YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN  310 (629)
Q Consensus       235 ~n~l~~~~p~~~~~~---~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  310 (629)
                      ++.+...........   . +.+|..+.+.++..- ....+..-..+|+.|+|.++.....+......+..++.+.+..+
T Consensus       726 ~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~  804 (889)
T KOG4658|consen  726 DCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN  804 (889)
T ss_pred             cCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence            988863322221100   0 112222222222211 12233345578888888888766555555666677777777777


Q ss_pred             ccCCc-chhhhcCCCCCceecccCCccccc
Q 043930          311 FFQGM-AMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       311 ~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      .+.+. ......+++++..+.+.+=++.+.
T Consensus       805 ~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~  834 (889)
T KOG4658|consen  805 KLEGLRMLCSLGGLPQLYWLPLSFLKLEEL  834 (889)
T ss_pred             ccccceeeecCCCCceeEecccCccchhhe
Confidence            77766 345556666666666665554433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.02  E-value=5e-10  Score=106.41  Aligned_cols=244  Identities=15%  Similarity=0.126  Sum_probs=146.3

Q ss_pred             chhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCC---c
Q 043930           20 DFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAE---I   96 (629)
Q Consensus        20 ~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~---l   96 (629)
                      .+..+..+++++|++|.+....  ...+.+.+..                             .++|+..++++.-   .
T Consensus        25 el~~~d~~~evdLSGNtigtEA--~e~l~~~ia~-----------------------------~~~L~vvnfsd~ftgr~   73 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEA--MEELCNVIAN-----------------------------VRNLRVVNFSDAFTGRD   73 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHH--HHHHHHHHhh-----------------------------hcceeEeehhhhhhccc
Confidence            4556788899999999987653  3333333321                             1234444444321   1


Q ss_pred             ccc-------CchhhhCCcCCCEEECCCCCCCccC----hhhhcCCCCCcEEEccCCcCCCC----chhh---------h
Q 043930           97 AAH-------LPPEMGWLLDLIYFHANTNRLCGII----PETFANMHRLEEFDVSNNRLVGP----FPTV---------A  152 (629)
Q Consensus        97 ~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~---------l  152 (629)
                      .+.       +-.++.++.+|+.++|++|.|....    -+.++.-+.|++|.|+||.+.-+    +..+         .
T Consensus        74 kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKa  153 (388)
T COG5238          74 KDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKA  153 (388)
T ss_pred             HHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhh
Confidence            111       2234556778888888888876443    34456677888888888877532    1111         1


Q ss_pred             hCCCCCcEEEccCCcCccCCCchhc----c--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCC
Q 043930          153 LTWKRNLYLDLRFNNFEGELPPELF----Q--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMK  226 (629)
Q Consensus       153 ~~l~~L~~L~Ls~n~l~~~ip~~~~----~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  226 (629)
                      .+-+.|+.+++..|++. .......    .  .+|+++.+..|.|.-.....+     -.             ..+..+.
T Consensus       154 a~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L-----~~-------------~gl~y~~  214 (388)
T COG5238         154 ADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTML-----AF-------------LGLFYSH  214 (388)
T ss_pred             ccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHH-----HH-------------HHHHHhC
Confidence            23467899999999987 4433322    1  578888898888874322111     11             1234457


Q ss_pred             CCcEEEccCCccccc----CCcccccCCCCCCcEEEecCCcccccchHHh----h--cccCccceeccccccccccccc-
Q 043930          227 ELQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSF----A--NLNNIMRLDISDNMLTGFVSAD-  295 (629)
Q Consensus       227 ~L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~--~l~~L~~L~Ls~N~l~~~~~~~-  295 (629)
                      +|++|||.+|.|+..    +...+.  ....|++|.+.+|-+.......+    .  ...+|..|.+.+|.+.+.+-.. 
T Consensus       215 ~LevLDlqDNtft~~gS~~La~al~--~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~  292 (388)
T COG5238         215 SLEVLDLQDNTFTLEGSRYLADALC--EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI  292 (388)
T ss_pred             cceeeeccccchhhhhHHHHHHHhc--ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee
Confidence            888888888887622    112222  33458888888887765433322    2  2467888888888766532222 


Q ss_pred             ----c--cCCCCCcEEEecCCccCCc
Q 043930          296 ----I--CKLPHLLNFTFSNNFFQGM  315 (629)
Q Consensus       296 ----l--~~l~~L~~L~L~~N~l~~~  315 (629)
                          +  .+++-|..|.+.+|+|...
T Consensus       293 ~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         293 SLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             chhhhhhcccHHHHHHHHccCcchhH
Confidence                1  2356677778888887643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.97  E-value=2.6e-11  Score=128.86  Aligned_cols=181  Identities=18%  Similarity=0.194  Sum_probs=95.2

Q ss_pred             hhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCcc---------ccccCchhhhhhhhHHHHhcCCcccccCC
Q 043930          150 TVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNW---------FRGSIPETIGESLARYIVLSSNNFTGCLP  219 (629)
Q Consensus       150 ~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~---------l~~~~~~~~~~~~L~~L~l~~n~l~~~~~  219 (629)
                      ..|..+.+|++|.|.++.|. .+-..... ..|++|...+.-         -.|.+...+....|...++++|.+. .+.
T Consensus       103 i~ifpF~sLr~LElrg~~L~-~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD  180 (1096)
T KOG1859|consen  103 ISIFPFRSLRVLELRGCDLS-TAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD  180 (1096)
T ss_pred             ceeccccceeeEEecCcchh-hhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence            34555666666666666664 21111111 445554433221         1123333333345666666666665 344


Q ss_pred             ccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchH-HhhcccCccceecccccccccccccccC
Q 043930          220 RSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ-SFANLNNIMRLDISDNMLTGFVSADICK  298 (629)
Q Consensus       220 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  298 (629)
                      .++.-+..|+.|||++|+++..-  .+.  .|..|++|||++|.|+ .++. ...++. |..|.|+||.++..  ..+.+
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~--~Lr--~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD--NLR--RLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH--HHH--hcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence            55555666666666666666322  333  5666666666666665 2221 222232 66666666666542  34556


Q ss_pred             CCCCcEEEecCCccCCcch-hhhcCCCCCceecccCCcccccc
Q 043930          299 LPHLLNFTFSNNFFQGMAM-ECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       299 l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      |.+|+.|||++|.|.+... ..+..+..|+.|+|.||.+.+..
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            6666666666666655432 33444556666666666665544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=9.8e-10  Score=125.92  Aligned_cols=248  Identities=15%  Similarity=0.098  Sum_probs=136.0

Q ss_pred             ccEEEEEcCCCC--ccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           84 RFVAMIDLNKAE--IAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        84 ~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      ..|+.|-+.+|.  +..+....|..++.|++|||++|.-.+.++..+++|-+|++|+|++..+.. ++..+.+++.|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhhee
Confidence            346666666665  444344456677788888888776666777778888888888888877774 77777888888888


Q ss_pred             EccCCcCccCCCchhc-cCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCccccc-CCccccCCCCCc----EEEcc
Q 043930          162 DLRFNNFEGELPPELF-QTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGC-LPRSIGYMKELQ----EIILM  234 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~-~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~-~~~~l~~l~~L~----~L~Ls  234 (629)
                      |+..+.....++..+. ..+|++|.|......... ..++. ..|+.|..-.+.+... +-..+..+..|.    .+.+.
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~-~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~  702 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK-LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE  702 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccch-hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence            8877765544433333 277777777655422111 11111 1222222222211111 111122222222    33332


Q ss_pred             CCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhc------ccCccceecccccccccccccccCCCCCcEEEec
Q 043930          235 ENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN------LNNIMRLDISDNMLTGFVSADICKLPHLLNFTFS  308 (629)
Q Consensus       235 ~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  308 (629)
                      ++... .....+.  .+.+|+.|.+.++.+......++..      +.+|..+.+.++..... ..+..-..+|+.|++.
T Consensus       703 ~~~~~-~~~~~~~--~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~-l~~~~f~~~L~~l~l~  778 (889)
T KOG4658|consen  703 GCSKR-TLISSLG--SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD-LTWLLFAPHLTSLSLV  778 (889)
T ss_pred             ccccc-eeecccc--cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-cchhhccCcccEEEEe
Confidence            33322 2333444  6888999999998886433333222      22334444444432221 2223346899999999


Q ss_pred             CCccCCcchhhhcCCCCCceecccCCccc
Q 043930          309 NNFFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       309 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      ++............+..++.+-+..+.+.
T Consensus       779 ~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  779 SCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             cccccccCCCHHHHhhhcccEEecccccc
Confidence            98876666555555555555444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.81  E-value=3.1e-09  Score=80.71  Aligned_cols=60  Identities=38%  Similarity=0.570  Sum_probs=32.0

Q ss_pred             CCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCcc
Q 043930          253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFF  312 (629)
Q Consensus       253 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l  312 (629)
                      +|++|+|++|+|+......|.++.+|++|+|++|.|+.+....|.++.+|++|+|++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            355555555555544344555555555555555555554444555555555555555543

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=2.8e-09  Score=102.69  Aligned_cols=216  Identities=16%  Similarity=0.200  Sum_probs=132.3

Q ss_pred             ccEEEEEcCCCCccccCc-hhh-hCCcCCCEEECCCCCCCcc--ChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCc
Q 043930           84 RFVAMIDLNKAEIAAHLP-PEM-GWLLDLIYFHANTNRLCGI--IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL  159 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p-~~~-~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  159 (629)
                      +.++.|.+.++.|..+.- ..| ...+++++|||.+|.|++.  +...+.+|..|+.|+|+.|.+...|-..-..+.+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            446667777777654322 122 3467888889999888753  445567888899999998888765443324667888


Q ss_pred             EEEccCCcCccCCCchhcc--CCCCEEEecCccccccC--chhhhh--hh---------hHHHHhcCCcccccCCccccC
Q 043930          160 YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSI--PETIGE--SL---------ARYIVLSSNNFTGCLPRSIGY  224 (629)
Q Consensus       160 ~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~--~~~~~~--~~---------L~~L~l~~n~l~~~~~~~l~~  224 (629)
                      .|-|.+..+.-.--..+..  ..+++|.++.|.+....  ...+..  ..         +..++++-|++.       ..
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~-------r~  197 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS-------RI  197 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH-------hh
Confidence            8888887764211111111  45566666666332110  011111  12         333444444444       23


Q ss_pred             CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc-chHHhhcccCccceecccccccccccc------ccc
Q 043930          225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS-VPQSFANLNNIMRLDISDNMLTGFVSA------DIC  297 (629)
Q Consensus       225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~l~  297 (629)
                      +.++..+.+.+|-|... -..-++..+..+..|+|+.|+|.+. -.+.+.+++.|+.|.+++|-|.+.+..      .++
T Consensus       198 Fpnv~sv~v~e~PlK~~-s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTE-SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             cccchheeeecCcccch-hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            46888888888877632 2222223567788999999999753 235677889999999999988653221      246


Q ss_pred             CCCCCcEEEe
Q 043930          298 KLPHLLNFTF  307 (629)
Q Consensus       298 ~l~~L~~L~L  307 (629)
                      ++.+++.|+=
T Consensus       277 RL~~v~vLNG  286 (418)
T KOG2982|consen  277 RLTKVQVLNG  286 (418)
T ss_pred             eccceEEecC
Confidence            6788887763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=4.6e-09  Score=79.75  Aligned_cols=61  Identities=28%  Similarity=0.402  Sum_probs=57.4

Q ss_pred             cCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          276 NNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       276 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      ++|++|+|++|+|+.+....|.++.+|++|+|++|.|..+..+.|.++.+|++|++++|.|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4799999999999988778899999999999999999999999999999999999999976

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=2.7e-09  Score=102.77  Aligned_cols=231  Identities=12%  Similarity=0.111  Sum_probs=136.5

Q ss_pred             hCCcCCCEEECCCCCCCccCh-hhh-cCCCCCcEEEccCCcCCC--CchhhhhCCCCCcEEEccCCcCccCCCchh-ccC
Q 043930          105 GWLLDLIYFHANTNRLCGIIP-ETF-ANMHRLEEFDVSNNRLVG--PFPTVALTWKRNLYLDLRFNNFEGELPPEL-FQT  179 (629)
Q Consensus       105 ~~l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~-~~~  179 (629)
                      ..++.|+.|.+.++.|..+-. ..| ...+.+++|||.+|.|.+  .+...+.++..|++|+|+.|.+...|...- -..
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~  121 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK  121 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence            334456677788887764311 223 346789999999999974  344556789999999999999986665553 338


Q ss_pred             CCCEEEecCccccccCchhhhh--hhhHHHHhcCCccccc--CCccccCC-CCCcEEEccCCcccccCC-cccccCCCCC
Q 043930          180 GLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGC--LPRSIGYM-KELQEIILMENQLSGCLP-SEIGSGEYKN  253 (629)
Q Consensus       180 ~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~--~~~~l~~l-~~L~~L~Ls~n~l~~~~p-~~~~~~~l~~  253 (629)
                      +|+.|.|++..+.......+..  ..+++|.++.|++...  ..+..... +.++.|++..|.+..-.- ..++ ....+
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~-r~Fpn  200 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS-RIFPN  200 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH-hhccc
Confidence            9999999998876433222222  3566777777743211  01111111 245555555554320000 0000 02456


Q ss_pred             CcEEEecCCcccccc-hHHhhcccCccceecccccccccc-cccccCCCCCcEEEecCCccCCcch------hhhcCCCC
Q 043930          254 LTVFDIRSNKFHGSV-PQSFANLNNIMRLDISDNMLTGFV-SADICKLPHLLNFTFSNNFFQGMAM------ECISGSRD  325 (629)
Q Consensus       254 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~------~~l~~l~~  325 (629)
                      +..+-+..|-|.... ...+..++.+-.|+|+.|+|..-. .+.+.+++.|..|.+.+|-|.+...      -.|..+.+
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~  280 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK  280 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence            777777777665321 233455666777888888876421 2346677788888888887655432      23445566


Q ss_pred             CceecccCCcccc
Q 043930          326 DVYFEEKGNCLAE  338 (629)
Q Consensus       326 L~~L~l~~N~l~~  338 (629)
                      ++.|+  |..|..
T Consensus       281 v~vLN--GskIss  291 (418)
T KOG2982|consen  281 VQVLN--GSKISS  291 (418)
T ss_pred             eEEec--Ccccch
Confidence            66665  335553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.74  E-value=1.9e-09  Score=108.44  Aligned_cols=251  Identities=16%  Similarity=0.084  Sum_probs=130.4

Q ss_pred             ccEEEEEcCCCCcccc--CchhhhCCcCCCEEECCCCC-CCccChhhh-cCCCCCcEEEccCC-cCCCCchh-hhhCCCC
Q 043930           84 RFVAMIDLNKAEIAAH--LPPEMGWLLDLIYFHANTNR-LCGIIPETF-ANMHRLEEFDVSNN-RLVGPFPT-VALTWKR  157 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~-~l~~l~~  157 (629)
                      .+|+.|.|.++.-.+.  +-....++.++++|+|.++. |++..-..+ ..+.+|++|+|..| .|+...-. ....+.+
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            5677777777654433  11223456677777777663 333222222 24566777777763 33332222 3345667


Q ss_pred             CcEEEccCCc-CccCCCchhcc--CC--------------------------CCEEEecCcc-ccccCchhh--hhhhhH
Q 043930          158 NLYLDLRFNN-FEGELPPELFQ--TG--------------------------LDIIFLNHNW-FRGSIPETI--GESLAR  205 (629)
Q Consensus       158 L~~L~Ls~n~-l~~~ip~~~~~--~~--------------------------L~~L~L~~n~-l~~~~~~~~--~~~~L~  205 (629)
                      |++|+|+++. |++..-..++.  ++                          +..|++.+|. +++..-..+  +...|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            7777777653 22211111111  22                          3333333332 221110011  113466


Q ss_pred             HHHhcCCccc-cc-CCccccCCCCCcEEEccCCc-ccccCCcccccCCCCCCcEEEecCCccc--ccchHHhhcccCccc
Q 043930          206 YIVLSSNNFT-GC-LPRSIGYMKELQEIILMENQ-LSGCLPSEIGSGEYKNLTVFDIRSNKFH--GSVPQSFANLNNIMR  280 (629)
Q Consensus       206 ~L~l~~n~l~-~~-~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~  280 (629)
                      +|+.+++... +. +.....+..+|++|-|.+++ |++.....++. ++..|+.|++..+.+.  +.+...-.++..|++
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-NCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-CChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            6666654432 22 11222345677777777765 33333334443 5667788887777543  112222235677888


Q ss_pred             eecccccccccc-----cccccCCCCCcEEEecCCcc-CCcchhhhcCCCCCceecccCCc
Q 043930          281 LDISDNMLTGFV-----SADICKLPHLLNFTFSNNFF-QGMAMECISGSRDDVYFEEKGNC  335 (629)
Q Consensus       281 L~Ls~N~l~~~~-----~~~l~~l~~L~~L~L~~N~l-~~~~~~~l~~l~~L~~L~l~~N~  335 (629)
                      |.|++|.+....     ...-+.+..|+.|.|+++.+ ++...+.+..+..|+.+++.+..
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            888888643221     22234567888888888864 44556777788888888876643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.52  E-value=7.8e-09  Score=88.63  Aligned_cols=107  Identities=20%  Similarity=0.199  Sum_probs=59.8

Q ss_pred             CCCCEEEecCccccccCchhhhh--hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcE
Q 043930          179 TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV  256 (629)
Q Consensus       179 ~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~  256 (629)
                      ..|+.++|++|.|. .++..|..  ..++.|+|++|.|. .++..|..|+.|+.|++++|.|. ..+..+.  .|.+|..
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~--~L~~l~~  127 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIA--PLIKLDM  127 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHH--HHHhHHH
Confidence            34444555555554 33333322  24566666666666 45666777777777777777776 5555555  5677777


Q ss_pred             EEecCCcccccchHHhhcccCccceeccccccccc
Q 043930          257 FDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGF  291 (629)
Q Consensus       257 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  291 (629)
                      ||..+|.+..+..+ +..-.++-.+++.++.+.+.
T Consensus       128 Lds~~na~~eid~d-l~~s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  128 LDSPENARAEIDVD-LFYSSLPALIKLGNEPLGDE  161 (177)
T ss_pred             hcCCCCccccCcHH-HhccccHHHHHhcCCccccc
Confidence            77777766633222 22223333444455555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.47  E-value=3.6e-08  Score=84.60  Aligned_cols=128  Identities=16%  Similarity=0.171  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCccccCchh---hhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           86 VAMIDLNKAEIAAHLPPE---MGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        86 L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      +..+||++|.|.. +.+.   +.+..+|+..+|++|.|...-...-..+..++.|+|++|.|.. ++..+..|..|+.|+
T Consensus        29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcc
Confidence            4456666665532 2332   3344556666777777664332322344467777777777765 556677777777777


Q ss_pred             ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCccccc
Q 043930          163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGC  217 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~  217 (629)
                      +++|.|. ..+..++. .+|..|+..+|.+. .++..+.. ...-.++++++.+.+.
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDE  161 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCccccc
Confidence            7777776 55555554 56666666666655 33333322 3334445555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.40  E-value=1.4e-07  Score=105.78  Aligned_cols=87  Identities=17%  Similarity=0.239  Sum_probs=38.1

Q ss_pred             CCCCCcEEEecCCcccccchHHhhcccCccceecccccccc-cccccccCCCCCcEEEecCCccCCcc------hhhhcC
Q 043930          250 EYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG-FVSADICKLPHLLNFTFSNNFFQGMA------MECISG  322 (629)
Q Consensus       250 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~------~~~l~~  322 (629)
                      ++.+|..||+++.+++..  ..+++|++|++|.+.+=.+.. .....+.+|++|+.||++........      .++-..
T Consensus       171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            344555555555555422  344455555555554443332 12223444555555555544322211      122223


Q ss_pred             CCCCceecccCCcccc
Q 043930          323 SRDDVYFEEKGNCLAE  338 (629)
Q Consensus       323 l~~L~~L~l~~N~l~~  338 (629)
                      +++|+.||.+|+.+.+
T Consensus       249 LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINE  264 (699)
T ss_pred             CccccEEecCCcchhH
Confidence            4555555555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.36  E-value=1.5e-07  Score=105.48  Aligned_cols=137  Identities=20%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             CCCcEEEccCCcCc-cCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEE
Q 043930          156 KRNLYLDLRFNNFE-GELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEII  232 (629)
Q Consensus       156 ~~L~~L~Ls~n~l~-~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  232 (629)
                      .+|++|||++...- ..+...++.  .+|+.|.+++-.+...-                      +-..+.++.+|..||
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d----------------------F~~lc~sFpNL~sLD  179 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD----------------------FSQLCASFPNLRSLD  179 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh----------------------HHHHhhccCccceee
Confidence            56777777665432 122223333  66666666665544221                      112234455666666


Q ss_pred             ccCCcccccCCcccccCCCCCCcEEEecCCcccc-cchHHhhcccCccceecccccccccc------cccccCCCCCcEE
Q 043930          233 LMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG-SVPQSFANLNNIMRLDISDNMLTGFV------SADICKLPHLLNF  305 (629)
Q Consensus       233 Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~l~~l~~L~~L  305 (629)
                      +++.+++ .+ ..+.  +|++|++|.|.+=.|.. ..-..+.+|++|++||+|..+.....      .+....|++|+.|
T Consensus       180 IS~TnI~-nl-~GIS--~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL  255 (699)
T KOG3665|consen  180 ISGTNIS-NL-SGIS--RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL  255 (699)
T ss_pred             cCCCCcc-Cc-HHHh--ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEE
Confidence            6666665 22 2233  56666666666555542 22334556666666666655433211      1112235667777


Q ss_pred             EecCCccCCcchh
Q 043930          306 TFSNNFFQGMAME  318 (629)
Q Consensus       306 ~L~~N~l~~~~~~  318 (629)
                      |.+++.+++...+
T Consensus       256 DcSgTdi~~~~le  268 (699)
T KOG3665|consen  256 DCSGTDINEEILE  268 (699)
T ss_pred             ecCCcchhHHHHH
Confidence            7776666554433

>PHA03247 large tegument protein UL36; Provisional

Probab=98.19  E-value=0.0022  Score=78.12  Aligned_cols=11  Identities=9%  Similarity=0.172  Sum_probs=5.1

Q ss_pred             cEEEecCCccc
Q 043930          255 TVFDIRSNKFH  265 (629)
Q Consensus       255 ~~L~Ls~n~l~  265 (629)
                      +.|.+..|-|.
T Consensus      2361 ~LL~~D~NpIE 2371 (3151)
T PHA03247       2361 DLLHADLNPIE 2371 (3151)
T ss_pred             HHhccCCchHH
Confidence            33444555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.16  E-value=1.1e-07  Score=96.10  Aligned_cols=228  Identities=13%  Similarity=0.056  Sum_probs=122.3

Q ss_pred             cccEEEEEcCCC-CccccCchh-hhCCcCCCEEECCCCC-CCcc-ChhhhcCCCCCcEEEccCCcCCCC--chhhhhCCC
Q 043930           83 ERFVAMIDLNKA-EIAAHLPPE-MGWLLDLIYFHANTNR-LCGI-IPETFANMHRLEEFDVSNNRLVGP--FPTVALTWK  156 (629)
Q Consensus        83 ~~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~  156 (629)
                      .+.|++|+|..| .|++...+. ...+.+|++|+++++. |.+. +-..+.++++|+.+.+++|.=.+.  +...-..+.
T Consensus       189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~  268 (483)
T KOG4341|consen  189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL  268 (483)
T ss_pred             cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence            455777777773 444443332 2346778888887763 3321 223455666677776665432210  111122344


Q ss_pred             CCcEEEccCCc-CccCCCchhc--cCCCCEEEecCcccc-ccCchhhhh--hhhHHHHhcCCcc-cccCCccc-cCCCCC
Q 043930          157 RNLYLDLRFNN-FEGELPPELF--QTGLDIIFLNHNWFR-GSIPETIGE--SLARYIVLSSNNF-TGCLPRSI-GYMKEL  228 (629)
Q Consensus       157 ~L~~L~Ls~n~-l~~~ip~~~~--~~~L~~L~L~~n~l~-~~~~~~~~~--~~L~~L~l~~n~l-~~~~~~~l-~~l~~L  228 (629)
                      .+..||+..|. ++++--..+.  ...|++|+.+++... +..-..++.  .+|+.|.+..++. ++.--..+ .++..|
T Consensus       269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L  348 (483)
T KOG4341|consen  269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL  348 (483)
T ss_pred             HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence            45566655543 2211111111  156777777766432 222222332  3566666666542 22111112 345788


Q ss_pred             cEEEccCCcccccC-CcccccCCCCCCcEEEecCCcc-cccc----hHHhhcccCccceecccccc-cccccccccCCCC
Q 043930          229 QEIILMENQLSGCL-PSEIGSGEYKNLTVFDIRSNKF-HGSV----PQSFANLNNIMRLDISDNML-TGFVSADICKLPH  301 (629)
Q Consensus       229 ~~L~Ls~n~l~~~~-p~~~~~~~l~~L~~L~Ls~n~l-~~~~----~~~~~~l~~L~~L~Ls~N~l-~~~~~~~l~~l~~  301 (629)
                      +.|++.++...... -..+. .++..|++|.|++|.+ ++..    ...-..+..|+.|.|+++.+ ++...+.+..+.+
T Consensus       349 e~l~~e~~~~~~d~tL~sls-~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~  427 (483)
T KOG4341|consen  349 ERLDLEECGLITDGTLASLS-RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN  427 (483)
T ss_pred             hhhcccccceehhhhHhhhc-cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence            88888877654221 11222 2678889998888854 3221    12224567788888988854 4445566777888


Q ss_pred             CcEEEecCCc
Q 043930          302 LLNFTFSNNF  311 (629)
Q Consensus       302 L~~L~L~~N~  311 (629)
                      |+.++|-++.
T Consensus       428 Leri~l~~~q  437 (483)
T KOG4341|consen  428 LERIELIDCQ  437 (483)
T ss_pred             cceeeeechh
Confidence            9998888875

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.15  E-value=2.3e-06  Score=78.65  Aligned_cols=108  Identities=15%  Similarity=0.141  Sum_probs=72.1

Q ss_pred             CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccc-ccccCCCCCcE
Q 043930          226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVS-ADICKLPHLLN  304 (629)
Q Consensus       226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~  304 (629)
                      .+...+||++|.+. .+. .|.  .+.+|.+|.|++|+|+.+.+..-.-+.+|..|.|.+|.|..... .-+..|++|++
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp--~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLP--HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccceecccccchh-hcc-cCC--CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            46677788888776 222 233  56778888888888885554444445678888888887764321 23566788888


Q ss_pred             EEecCCccCCc---chhhhcCCCCCceecccCCccc
Q 043930          305 FTFSNNFFQGM---AMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       305 L~L~~N~l~~~---~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      |.+-+|.++..   -...+..+++|+.||+.+-...
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            88888876653   2345667888888887765443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.14  E-value=1.8e-06  Score=79.33  Aligned_cols=105  Identities=16%  Similarity=0.200  Sum_probs=76.7

Q ss_pred             hHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc-hHHhhcccCcccee
Q 043930          204 ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV-PQSFANLNNIMRLD  282 (629)
Q Consensus       204 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~  282 (629)
                      ...+||++|.+...  ..|.++..|.+|.|++|+|+ .|...+.. .+.+|+.|.|.+|.|.... .+-+..+++|++|.
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhh-hccccceEEecCcchhhhhhcchhccCCccceee
Confidence            34455555555422  45778899999999999999 55545542 5788999999999887321 24467889999999


Q ss_pred             ccccccccc---ccccccCCCCCcEEEecCCcc
Q 043930          283 ISDNMLTGF---VSADICKLPHLLNFTFSNNFF  312 (629)
Q Consensus       283 Ls~N~l~~~---~~~~l~~l~~L~~L~L~~N~l  312 (629)
                      +-+|.+...   ....++++++|+.||+.+=..
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            999988643   234568899999999876443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.08  E-value=9e-06  Score=84.44  Aligned_cols=139  Identities=11%  Similarity=0.137  Sum_probs=74.2

Q ss_pred             hcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHH
Q 043930          128 FANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYI  207 (629)
Q Consensus       128 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L  207 (629)
                      +..+.+|++|+|++|.|+. ++.   --.+|++|+|++|.-...++..+ ..+|++|+|++|.....++.     .|+.|
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~-----sLe~L  117 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE-----SVRSL  117 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc-----ccceE
Confidence            4556888899999887775 341   23468888888754333555433 36788888887732223333     34555


Q ss_pred             HhcCCcccccCCccccCC-CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccc
Q 043930          208 VLSSNNFTGCLPRSIGYM-KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDN  286 (629)
Q Consensus       208 ~l~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  286 (629)
                      ++.++.+..     |..+ .+|+.|.+.+++....  ..+...--.+|++|++++|... .++..+.  .+|+.|+++.|
T Consensus       118 ~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        118 EIKGSATDS-----IKNVPNGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EeCCCCCcc-----cccCcchHhheeccccccccc--cccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            555444321     2222 3566666644331100  0111001146777777777654 2232222  36777777665

>PHA03247 large tegument protein UL36; Provisional

Probab=98.06  E-value=0.0061  Score=74.50  Aligned_cols=12  Identities=8%  Similarity=0.097  Sum_probs=4.9

Q ss_pred             hcCCCcccccch
Q 043930           24 QYDLKDKTFESH   35 (629)
Q Consensus        24 l~~L~~L~ls~~   35 (629)
                      +.+.-.|||-..
T Consensus      2104 l~nF~RLDLv~Q 2115 (3151)
T PHA03247       2104 IYNFWRLDLVLQ 2115 (3151)
T ss_pred             HHhhhhhhHHHH
Confidence            334444444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=2e-05  Score=81.83  Aligned_cols=133  Identities=13%  Similarity=0.108  Sum_probs=60.3

Q ss_pred             CCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCC-cCccCCCchhccCCCCEE
Q 043930          106 WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN-NFEGELPPELFQTGLDII  184 (629)
Q Consensus       106 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~ip~~~~~~~L~~L  184 (629)
                      .+.+|++|+|++|.|.. ++   .--.+|++|+|++|.-...++..+  ..+|++|+|++| .+. .++     .+|+.|
T Consensus        50 ~~~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-----~sLe~L  117 (426)
T PRK15386         50 EARASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-----ESVRSL  117 (426)
T ss_pred             HhcCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-----cccceE
Confidence            34556666666665542 22   111246666665543322233322  235666666665 332 232     345556


Q ss_pred             EecCcccc--ccCchhhhhhhhHHHHhcCCcccccCCcccc-CC-CCCcEEEccCCcccccCCcccccCCCCCCcEEEec
Q 043930          185 FLNHNWFR--GSIPETIGESLARYIVLSSNNFTGCLPRSIG-YM-KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR  260 (629)
Q Consensus       185 ~L~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l-~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls  260 (629)
                      +|.++.+.  +.++     ..|+.|.+.+++....  ..+. .+ .+|++|++++|... .++..+.    .+|+.|+++
T Consensus       118 ~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP----~SLk~L~ls  185 (426)
T PRK15386        118 EIKGSATDSIKNVP-----NGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNI-ILPEKLP----ESLQSITLH  185 (426)
T ss_pred             EeCCCCCcccccCc-----chHhheeccccccccc--cccccccCCcccEEEecCCCcc-cCccccc----ccCcEEEec
Confidence            65544432  1222     2345555533221100  0011 11 46777777776654 3333332    466777766


Q ss_pred             CC
Q 043930          261 SN  262 (629)
Q Consensus       261 ~n  262 (629)
                      .|
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            55

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.93  E-value=3.5e-07  Score=98.33  Aligned_cols=38  Identities=29%  Similarity=0.168  Sum_probs=26.6

Q ss_pred             CCcEEEccCCcCCCCchh----hhhCCCCCcEEEccCCcCcc
Q 043930          133 RLEEFDVSNNRLVGPFPT----VALTWKRNLYLDLRFNNFEG  170 (629)
Q Consensus       133 ~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~  170 (629)
                      .|..|.|.+|.+......    .+..+.+|..|++++|.+.+
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~  129 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD  129 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc
Confidence            377888888888754333    34456778888888888763

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.88  E-value=1.1e-07  Score=102.20  Aligned_cols=62  Identities=15%  Similarity=0.188  Sum_probs=36.1

Q ss_pred             ccceecccccccccc----cccccCCCCCcEEEecCCccCCcchh----hh-cCCCCCceecccCCcccccc
Q 043930          278 IMRLDISDNMLTGFV----SADICKLPHLLNFTFSNNFFQGMAME----CI-SGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       278 L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~~----~l-~~l~~L~~L~l~~N~l~~~~  340 (629)
                      +..|++..+.+.+..    ...+.....++.++++.|...+....    .. .+. .++.++++.|+++...
T Consensus       378 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~  448 (478)
T KOG4308|consen  378 LLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALG  448 (478)
T ss_pred             cchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcc
Confidence            556666666555432    22334556777888887766544321    11 233 7777788888777544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.86  E-value=1.2e-05  Score=56.01  Aligned_cols=18  Identities=33%  Similarity=0.554  Sum_probs=7.0

Q ss_pred             ccCCCCCcEEEecCCccC
Q 043930          296 ICKLPHLLNFTFSNNFFQ  313 (629)
Q Consensus       296 l~~l~~L~~L~L~~N~l~  313 (629)
                      |.+|.+|++|+|++|.|+
T Consensus        20 l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             GTTCTTSSEEEETSSCCS
T ss_pred             HhCCCCCCEEEecCCCCC
Confidence            333333333333333333

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.81  E-value=9.5e-06  Score=77.83  Aligned_cols=15  Identities=33%  Similarity=0.541  Sum_probs=7.3

Q ss_pred             CCCCcEEEecCCccc
Q 043930          251 YKNLTVFDIRSNKFH  265 (629)
Q Consensus       251 l~~L~~L~Ls~n~l~  265 (629)
                      +.+|++|+|++|+|.
T Consensus        90 ~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIK  104 (260)
T ss_pred             CCceeEEeecCCccc
Confidence            344555555555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=3.3e-05  Score=53.87  Aligned_cols=36  Identities=25%  Similarity=0.501  Sum_probs=15.3

Q ss_pred             CCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCC
Q 043930          109 DLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLV  145 (629)
Q Consensus       109 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  145 (629)
                      +|++|+|++|+|+. ++..|++|++|++|+|++|.|+
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34444444444442 2333444444444444444444

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=2.9e-06  Score=81.48  Aligned_cols=100  Identities=14%  Similarity=0.159  Sum_probs=69.5

Q ss_pred             CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc-cccccCCCCCc
Q 043930          225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV-SADICKLPHLL  303 (629)
Q Consensus       225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~  303 (629)
                      +.+.+.|+++|++|+++   .+.. ++..|++|.|+-|+|+..  ..|..+++|++|+|..|.|.++. .+.+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~-kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICE-KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHH-hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            45677788888887743   3332 677888888888888743  34777888888888888887642 23467788888


Q ss_pred             EEEecCCccCCcc-----hhhhcCCCCCceec
Q 043930          304 NFTFSNNFFQGMA-----MECISGSRDDVYFE  330 (629)
Q Consensus       304 ~L~L~~N~l~~~~-----~~~l~~l~~L~~L~  330 (629)
                      .|.|..|--.+..     ...|.-+++|++||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888887654432     24556677777776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.67  E-value=2.3e-05  Score=85.89  Aligned_cols=34  Identities=12%  Similarity=0.187  Sum_probs=18.0

Q ss_pred             CcEEEecCCccCC-cchhhhcC-CCCCceecccCCc
Q 043930          302 LLNFTFSNNFFQG-MAMECISG-SRDDVYFEEKGNC  335 (629)
Q Consensus       302 L~~L~L~~N~l~~-~~~~~l~~-l~~L~~L~l~~N~  335 (629)
                      |+.|+++.+.... .....+.. +..++.+++.+..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence            6777777765432 22223222 5556666666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.56  E-value=2.7e-05  Score=74.76  Aligned_cols=103  Identities=15%  Similarity=0.207  Sum_probs=56.8

Q ss_pred             CCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCC--cccccchHHhhcccCccceeccccccccc-ccccccCCC
Q 043930          224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSN--KFHGSVPQSFANLNNIMRLDISDNMLTGF-VSADICKLP  300 (629)
Q Consensus       224 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~  300 (629)
                      .+.+|+.|.+.+..++ .+. .+-  .|.+|+.|+++.|  ++.+.+.-....+++|++|+|++|+|..+ -...+..+.
T Consensus        41 ~~~~le~ls~~n~glt-t~~-~~P--~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLT-TLT-NFP--KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhcccee-ecc-cCC--CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            3445555555555554 221 222  4667777777777  44443433344557777777777777631 112244566


Q ss_pred             CCcEEEecCCccCCc---chhhhcCCCCCceec
Q 043930          301 HLLNFTFSNNFFQGM---AMECISGSRDDVYFE  330 (629)
Q Consensus       301 ~L~~L~L~~N~l~~~---~~~~l~~l~~L~~L~  330 (629)
                      +|..||+.+|..+..   -...|.-+.+|++||
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            677777777755443   234455556666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.45  E-value=0.00014  Score=64.03  Aligned_cols=77  Identities=12%  Similarity=0.184  Sum_probs=24.9

Q ss_pred             CCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceec
Q 043930          251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFE  330 (629)
Q Consensus       251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~  330 (629)
                      +.+|+.|++.++ +.......|.++.+|+.|++.+ .+..+....|..+.+|+.+++..+ +..+....|.++ .|+.+.
T Consensus        34 ~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~  109 (129)
T PF13306_consen   34 CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEIN  109 (129)
T ss_dssp             -TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE
T ss_pred             cccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEE
Confidence            334444444432 3322223344443444444433 222222233344444444444333 333333334443 444444


Q ss_pred             c
Q 043930          331 E  331 (629)
Q Consensus       331 l  331 (629)
                      +
T Consensus       110 ~  110 (129)
T PF13306_consen  110 I  110 (129)
T ss_dssp             -
T ss_pred             E
Confidence            3

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.34  E-value=2.4e-05  Score=85.68  Aligned_cols=109  Identities=17%  Similarity=0.022  Sum_probs=55.6

Q ss_pred             CCCCCcEEEccCCcCCCC--chhhhhCCCCCcEEEccCC-cCccCCC---chhc--cCCCCEEEecCcc-ccccCchhhh
Q 043930          130 NMHRLEEFDVSNNRLVGP--FPTVALTWKRNLYLDLRFN-NFEGELP---PELF--QTGLDIIFLNHNW-FRGSIPETIG  200 (629)
Q Consensus       130 ~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n-~l~~~ip---~~~~--~~~L~~L~L~~n~-l~~~~~~~~~  200 (629)
                      .+..|+.|.+.++.-...  +......+.+|+.|+++++ .......   ..+.  ..+|+.|+|+++. +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356666666666533222  2344555666777776652 1111111   0111  1566677776666 4444333333


Q ss_pred             h--hhhHHHHhcCCc-cccc-CCccccCCCCCcEEEccCCcc
Q 043930          201 E--SLARYIVLSSNN-FTGC-LPRSIGYMKELQEIILMENQL  238 (629)
Q Consensus       201 ~--~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l  238 (629)
                      .  ..|++|.+.+|. +++. +......+.+|++|+|+++..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            3  256666665555 4433 222334456788888877654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.32  E-value=0.0005  Score=60.54  Aligned_cols=117  Identities=14%  Similarity=0.176  Sum_probs=63.4

Q ss_pred             hhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCcccee
Q 043930          203 LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD  282 (629)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  282 (629)
                      +|+.+.+.. .+.......|.++.+|+.|++.++ +.......+.  ++.+|+.+++.+ .+.......|..+.+|+.++
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~--~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFS--NCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTT--T-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeee--cccccccccccc-cccccccccccccccccccc
Confidence            677777764 455555677888889999999875 5523333333  677899999976 44434455777899999999


Q ss_pred             cccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCc
Q 043930          283 ISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDV  327 (629)
Q Consensus       283 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~  327 (629)
                      +..+ +..+....|.++ +|+.+.+.+ .+..+...+|.++.+|+
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            9776 555555667777 999999876 66666677888877764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=4.6e-05  Score=73.44  Aligned_cols=84  Identities=13%  Similarity=0.001  Sum_probs=44.2

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCc-hhhhhCCCCCcEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF-PTVALTWKRNLYL  161 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L  161 (629)
                      +.+++.|++=+|+|.++  ..+.+|..|++|.|+-|+|+..  ..|..+++|++|+|+.|.|.+.- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34455566666665543  2334556666666666666543  34556666666666666665421 1123445555555


Q ss_pred             EccCCcCcc
Q 043930          162 DLRFNNFEG  170 (629)
Q Consensus       162 ~Ls~n~l~~  170 (629)
                      .|..|...|
T Consensus        94 WL~ENPCc~  102 (388)
T KOG2123|consen   94 WLDENPCCG  102 (388)
T ss_pred             hhccCCccc
Confidence            555554443

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=97.08  E-value=0.002  Score=66.78  Aligned_cols=108  Identities=18%  Similarity=0.047  Sum_probs=52.9

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhh---cCCCCCcEEEccCCcCCCCchhhhhC---C
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETF---ANMHRLEEFDVSNNRLVGPFPTVALT---W  155 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~l~~---l  155 (629)
                      ...+++++|++.|.+....+..|..  -.--|.++.|.++..+-..+   .+-..|.+|+|+.|...+.++..+..   -
T Consensus       163 pnpr~r~~dls~npi~dkvpihl~~--p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~  240 (553)
T KOG4242|consen  163 PNPRARQHDLSPNPIGDKVPIHLPQ--PGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT  240 (553)
T ss_pred             CcchhhhhccCCCcccccCCccccC--CCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence            4556788888888876654433321  11124555555543211111   11124677777777666555544322   2


Q ss_pred             CCCcEEEccCCcCcc-CCCchhcc---CCCCEEEecCccc
Q 043930          156 KRNLYLDLRFNNFEG-ELPPELFQ---TGLDIIFLNHNWF  191 (629)
Q Consensus       156 ~~L~~L~Ls~n~l~~-~ip~~~~~---~~L~~L~L~~n~l  191 (629)
                      ..|++||.+...+.- .+...++.   ++|...+++.|..
T Consensus       241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~  280 (553)
T KOG4242|consen  241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT  280 (553)
T ss_pred             hhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence            345566665554431 11111221   4566666665544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.74  E-value=0.0018  Score=44.94  Aligned_cols=38  Identities=37%  Similarity=0.724  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCC---CCCCCcCceecC
Q 043930           39 MAYVGLQAFKKAIYSDPYNHTENWVG---TDVCQYNGVLCD   76 (629)
Q Consensus        39 ~~~~~l~~~~~~~~~~~~~~l~~~~~---~~~c~~~g~~~~   76 (629)
                      .+..+|++||+.+..+....+.+|..   .++|.|.||.|+
T Consensus         3 ~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    3 QDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             HHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            46789999999998777788999986   599999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=96.62  E-value=0.0023  Score=66.35  Aligned_cols=251  Identities=13%  Similarity=0.030  Sum_probs=139.2

Q ss_pred             EEcCCCCccccCchhhh---CCcCCCEEECCCCCCCccChhhhcC---CCCCcEEEccCCcCCCC---chhhhhCCCCCc
Q 043930           89 IDLNKAEIAAHLPPEMG---WLLDLIYFHANTNRLCGIIPETFAN---MHRLEEFDVSNNRLVGP---FPTVALTWKRNL  159 (629)
Q Consensus        89 L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~  159 (629)
                      |.|+.|.++......+.   .-..|++|+|+.|...+.++..+..   -.-|+.|+++...+.-.   -.-.....++|.
T Consensus       192 l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~  271 (553)
T KOG4242|consen  192 LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLT  271 (553)
T ss_pred             cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccc
Confidence            55666665443222111   1245788888888877666654433   23566676666554311   112233456788


Q ss_pred             EEEccCCcCcc----CCCchh---cc--CCCCEEEecCccccccCchhhhh-------hhhHHHHhcCCccccc-CCccc
Q 043930          160 YLDLRFNNFEG----ELPPEL---FQ--TGLDIIFLNHNWFRGSIPETIGE-------SLARYIVLSSNNFTGC-LPRSI  222 (629)
Q Consensus       160 ~L~Ls~n~l~~----~ip~~~---~~--~~L~~L~L~~n~l~~~~~~~~~~-------~~L~~L~l~~n~l~~~-~~~~l  222 (629)
                      +.+++.|....    ++....   |.  .++ +|++.++....+-...+..       ..--++++..|...+. ..+.-
T Consensus       272 ~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleac  350 (553)
T KOG4242|consen  272 FGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEAC  350 (553)
T ss_pred             hhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcc
Confidence            88888776542    222221   11  456 7777776655433222211       1123455555554432 11111


Q ss_pred             cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccc-----ccchHHh----hcccCccceeccccccccccc
Q 043930          223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH-----GSVPQSF----ANLNNIMRLDISDNMLTGFVS  293 (629)
Q Consensus       223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~  293 (629)
                      .+-..+++|++.+|++.|.+-........+.++.|++.+..-.     +.+...+    ...--|+.+.++.|.+.....
T Consensus       351 i~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~  430 (553)
T KOG4242|consen  351 IFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLE  430 (553)
T ss_pred             ccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHH
Confidence            1224599999999999877655444335567888887654321     1111111    112347889999998875433


Q ss_pred             cc---ccCCCCCcEEEecCCccCCcc----hhhhcCCCCCceecccCCcccccc
Q 043930          294 AD---ICKLPHLLNFTFSNNFFQGMA----MECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       294 ~~---l~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      ..   +..-..|..|++++|...+..    ...+....+++.+..+.|....-.
T Consensus       431 s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~g  484 (553)
T KOG4242|consen  431 SAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPG  484 (553)
T ss_pred             HHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccc
Confidence            22   334577999999999887653    445555667777777777665433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.0011  Score=61.50  Aligned_cols=81  Identities=12%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             CCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc-ccccchHHhhc-ccCccceecccc-cccccccccccCCCCCc
Q 043930          227 ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK-FHGSVPQSFAN-LNNIMRLDISDN-MLTGFVSADICKLPHLL  303 (629)
Q Consensus       227 ~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~  303 (629)
                      .++.+|-++..|..+.-+.+.  ++..|+.|.+.+|. +.+...+.+++ ..+|+.|+|++| +|++.....+.++++|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~--~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLR--DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHh--ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            345555555555544434443  44455555555442 22211122222 244555555544 34444444444455555


Q ss_pred             EEEecC
Q 043930          304 NFTFSN  309 (629)
Q Consensus       304 ~L~L~~  309 (629)
                      .|+|.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            554443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.04  E-value=0.00075  Score=62.48  Aligned_cols=81  Identities=10%  Similarity=0.164  Sum_probs=38.6

Q ss_pred             CCcEEEecCCcccccchHHhhcccCccceeccccc-ccccccccccC-CCCCcEEEecCC-ccCCcchhhhcCCCCCcee
Q 043930          253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNM-LTGFVSADICK-LPHLLNFTFSNN-FFQGMAMECISGSRDDVYF  329 (629)
Q Consensus       253 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~-l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L  329 (629)
                      .++.+|.+++.|..+.-+.+.++..|+.|.+.+|. +.+...+.+.+ ..+|+.|+|++| +|++....++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            34555555555554444445555555555555553 22221122222 245555555554 3555555555555555555


Q ss_pred             cccC
Q 043930          330 EEKG  333 (629)
Q Consensus       330 ~l~~  333 (629)
                      .|.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.60  E-value=0.00048  Score=64.91  Aligned_cols=90  Identities=17%  Similarity=0.151  Sum_probs=68.5

Q ss_pred             cccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCC
Q 043930          221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLP  300 (629)
Q Consensus       221 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  300 (629)
                      .+......+.||++.|++. .+-..+.  .+..|..||++.|.+. .++..+.++..++.+++.+|.+.. .+..+.++.
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s--~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~  111 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFS--ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEP  111 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchH--HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccC
Confidence            3455577888888888876 4444444  5677888888888887 778888888888888888888774 677788888


Q ss_pred             CCcEEEecCCccCCc
Q 043930          301 HLLNFTFSNNFFQGM  315 (629)
Q Consensus       301 ~L~~L~L~~N~l~~~  315 (629)
                      +++++++.+|.|.-.
T Consensus       112 ~~k~~e~k~~~~~~~  126 (326)
T KOG0473|consen  112 HPKKNEQKKTEFFRK  126 (326)
T ss_pred             CcchhhhccCcchHH
Confidence            888888888876543

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=95.48  E-value=0.77  Score=48.23  Aligned_cols=34  Identities=24%  Similarity=0.581  Sum_probs=16.4

Q ss_pred             CCCCCCCCCCcCceecCCCC-CCCcccEEEEEcCCCCc
Q 043930           60 ENWVGTDVCQYNGVLCDVFI-DNQERFVAMIDLNKAEI   96 (629)
Q Consensus        60 ~~~~~~~~c~~~g~~~~~~~-~~~~~~L~~L~L~~n~l   96 (629)
                      ..|.....|.   +.|.... ..+...|+.+||.+++|
T Consensus        55 ~~W~~~~~~G---al~lVkD~~~rsyFlrl~di~~~rl   89 (569)
T KOG3671|consen   55 NHWNKTGLCG---ALCLVKDNAQRSYFLRLVDIVNNRL   89 (569)
T ss_pred             hhhccccCce---eEEEeeccccceeeeEEeeecCcee
Confidence            4676655543   4443111 11344466666666654

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=95.28  E-value=0.78  Score=48.16  Aligned_cols=13  Identities=31%  Similarity=0.197  Sum_probs=7.6

Q ss_pred             cCCCEEECCCCCC
Q 043930          108 LDLIYFHANTNRL  120 (629)
Q Consensus       108 ~~L~~L~L~~n~l  120 (629)
                      -.|+.+||.+|+|
T Consensus        77 yFlrl~di~~~rl   89 (569)
T KOG3671|consen   77 YFLRLVDIVNNRL   89 (569)
T ss_pred             eeeEEeeecCcee
Confidence            3456666666664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.81  E-value=0.00059  Score=64.32  Aligned_cols=85  Identities=12%  Similarity=0.115  Sum_probs=56.0

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      ...+++.||++.|++... -..|..++.|..|+++.|.+. .++..+..+..+..+++.+|+++. .+..+....+++++
T Consensus        40 ~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchh
Confidence            345677777777766542 344566667777777777666 456666666677777777776665 56666677777777


Q ss_pred             EccCCcCc
Q 043930          162 DLRFNNFE  169 (629)
Q Consensus       162 ~Ls~n~l~  169 (629)
                      ++.+|.|.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            77776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.58  E-value=0.015  Score=33.69  Aligned_cols=12  Identities=25%  Similarity=0.523  Sum_probs=4.9

Q ss_pred             CcEEEecCCccc
Q 043930          254 LTVFDIRSNKFH  265 (629)
Q Consensus       254 L~~L~Ls~n~l~  265 (629)
                      |++|||++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.05  E-value=0.023  Score=32.94  Aligned_cols=12  Identities=50%  Similarity=0.581  Sum_probs=6.5

Q ss_pred             ccceeccccccc
Q 043930          278 IMRLDISDNMLT  289 (629)
Q Consensus       278 L~~L~Ls~N~l~  289 (629)
                      |++|||++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            455555555555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.04  E-value=0.13  Score=27.64  Aligned_cols=11  Identities=36%  Similarity=0.256  Sum_probs=3.5

Q ss_pred             CcEEEccCCcC
Q 043930          158 NLYLDLRFNNF  168 (629)
Q Consensus       158 L~~L~Ls~n~l  168 (629)
                      |++|+|++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.91  E-value=0.2  Score=30.19  Aligned_cols=21  Identities=38%  Similarity=0.513  Sum_probs=11.6

Q ss_pred             CCCcEEEccCCcCccCCCchhc
Q 043930          156 KRNLYLDLRFNNFEGELPPELF  177 (629)
Q Consensus       156 ~~L~~L~Ls~n~l~~~ip~~~~  177 (629)
                      .+|++|+|++|+|+ .++..+|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45566666666665 4554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.91  E-value=0.2  Score=30.19  Aligned_cols=21  Identities=38%  Similarity=0.513  Sum_probs=11.6

Q ss_pred             CCCcEEEccCCcCccCCCchhc
Q 043930          156 KRNLYLDLRFNNFEGELPPELF  177 (629)
Q Consensus       156 ~~L~~L~Ls~n~l~~~ip~~~~  177 (629)
                      .+|++|+|++|+|+ .++..+|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45566666666665 4554443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.72  E-value=0.11  Score=30.72  Aligned_cols=16  Identities=25%  Similarity=0.493  Sum_probs=6.9

Q ss_pred             CCCcEEEecCCccccc
Q 043930          252 KNLTVFDIRSNKFHGS  267 (629)
Q Consensus       252 ~~L~~L~Ls~n~l~~~  267 (629)
                      ++|++|+|++|+|++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            3455555555555443

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.28  E-value=0.17  Score=29.80  Aligned_cols=17  Identities=29%  Similarity=0.419  Sum_probs=7.5

Q ss_pred             CCCcEEEecCCccCCcc
Q 043930          300 PHLLNFTFSNNFFQGMA  316 (629)
Q Consensus       300 ~~L~~L~L~~N~l~~~~  316 (629)
                      .+|++|+|++|.|++..
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            34555555555554443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.70  E-value=0.46  Score=28.56  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=12.2

Q ss_pred             CCCcEEEecCCccCCcchhhh
Q 043930          300 PHLLNFTFSNNFFQGMAMECI  320 (629)
Q Consensus       300 ~~L~~L~L~~N~l~~~~~~~l  320 (629)
                      .+|++|+|++|+|..+..+.|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666665544433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.70  E-value=0.46  Score=28.56  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=12.2

Q ss_pred             CCCcEEEecCCccCCcchhhh
Q 043930          300 PHLLNFTFSNNFFQGMAMECI  320 (629)
Q Consensus       300 ~~L~~L~L~~N~l~~~~~~~l  320 (629)
                      .+|++|+|++|+|..+..+.|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666665544433

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=87.38  E-value=0.22  Score=53.33  Aligned_cols=63  Identities=13%  Similarity=0.189  Sum_probs=35.4

Q ss_pred             CCCCCcEEEecCCccccc--chHHhhcccCccceecccc--cccccccccccC--CCCCcEEEecCCccCC
Q 043930          250 EYKNLTVFDIRSNKFHGS--VPQSFANLNNIMRLDISDN--MLTGFVSADICK--LPHLLNFTFSNNFFQG  314 (629)
Q Consensus       250 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~--l~~L~~L~L~~N~l~~  314 (629)
                      +...+..|+|++|+|...  +-..-...++|+.|+|++|  .+..  ..++.+  ...|++|.|.||.|..
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence            445666777777776532  1112223467777777777  4432  222333  2456777777777654

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=87.30  E-value=0.18  Score=53.88  Aligned_cols=64  Identities=20%  Similarity=0.162  Sum_probs=30.7

Q ss_pred             CCCcEEEccCCcccccC-CcccccCCCCCCcEEEecCCcccccchHHhhcc--cCccceecccccccc
Q 043930          226 KELQEIILMENQLSGCL-PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL--NNIMRLDISDNMLTG  290 (629)
Q Consensus       226 ~~L~~L~Ls~n~l~~~~-p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~  290 (629)
                      ..+..|+|++|++...- ...+. ...++|+.|+|++|...-....++.++  ..|++|-|.||.|..
T Consensus       218 p~i~sl~lsnNrL~~Ld~~ssls-q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  218 PEILSLSLSNNRLYHLDALSSLS-QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             cceeeeecccchhhchhhhhHHH-HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence            45556666666654210 01111 134567777777772211122233332  235667777776653

>PRK09718 hypothetical protein; Validated

Probab=87.13  E-value=0.39  Score=50.77  Aligned_cols=15  Identities=0%  Similarity=-0.055  Sum_probs=9.5

Q ss_pred             CCCcEEEecCCcccc
Q 043930          252 KNLTVFDIRSNKFHG  266 (629)
Q Consensus       252 ~~L~~L~Ls~n~l~~  266 (629)
                      ..|+.+|++.|.+.+
T Consensus       228 T~LkgVDFSdC~Le~  242 (512)
T PRK09718        228 VRISTGNFKDCITEQ  242 (512)
T ss_pred             CcCCCcccccccccc
Confidence            556666777666653

>PRK09718 hypothetical protein; Validated

Probab=83.85  E-value=0.91  Score=48.11  Aligned_cols=54  Identities=7%  Similarity=0.011  Sum_probs=26.1

Q ss_pred             CCCCEEEecCccccccCchhhhhhhh---HHHHhcCCcccccCCccccCCCCCcEEEccCCccc
Q 043930          179 TGLDIIFLNHNWFRGSIPETIGESLA---RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS  239 (629)
Q Consensus       179 ~~L~~L~L~~n~l~~~~~~~~~~~~L---~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  239 (629)
                      .+|+..++.+|.+.+..   |....|   +...+.++.+.+.   .|.+ ..|+.+|++.|.+.
T Consensus       185 AnLskA~F~gCDLseAd---FSEcdLS~aKka~F~~cDLt~A---dF~q-T~LkgVDFSdC~Le  241 (512)
T PRK09718        185 CQIRNSNFDNCYLYASH---FTRAEFLSAKEISFIKSNLTAV---MFDH-VRISTGNFKDCITE  241 (512)
T ss_pred             CcCCCCEEeCccCCcCC---ccCCccCCCCCCEEeCCCCCCC---CcCC-CcCCCccccccccc
Confidence            44555555555554332   111222   3344444444432   2222 57777777777766

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=80.54  E-value=1.5  Score=41.36  Aligned_cols=13  Identities=8%  Similarity=0.026  Sum_probs=6.1

Q ss_pred             CCcEEEccCCccc
Q 043930          227 ELQEIILMENQLS  239 (629)
Q Consensus       227 ~L~~L~Ls~n~l~  239 (629)
                      +++--.|.+++|.
T Consensus       197 N~eGA~L~gcNfe  209 (302)
T KOG1665|consen  197 NAEGASLKGCNFE  209 (302)
T ss_pred             ccccccccCcCCC
Confidence            4444444555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	629
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-17
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-17
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-13
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		3e-04
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		3e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 156/375 (41%), Gaps = 59/375 (15%)
Query: 19  NDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQ--YNGVLCD 76
           N+F  +  + D   +   +K+  +    F   +     N + + +  D+    ++G +  
Sbjct: 325 NNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 77  VFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEE 136
               N +  +  + L        +PP +    +L+  H + N L G IP +  ++ +L +
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 137 FDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSI 195
             +  N L G  P   +  K    L L FN+  GE+P  L   T L+ I L++N   G I
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 196 PETIG--ESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEI--GSGEY 251
           P+ IG  E+LA  + LS+N+F+G +P  +G  + L  + L  N  +G +P+ +   SG+ 
Sbjct: 504 PKWIGRLENLA-ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
Query: 252 K-------------------------NLTVF-----------------DIRSNKFHGSVP 269
                                     NL  F                 +I S  + G   
Sbjct: 563 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622
Query: 270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF 329
            +F N  ++M LD+S NML+G++  +I  +P+L        F   +    ISGS  D   
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--------FILNLGHNDISGSIPDEVG 674
Query: 330 EEKGNCLAEMEYQKL 344
           + +G  + ++   KL
Sbjct: 675 DLRGLNILDLSSNKL 689

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 9/192 (4%)
Query: 133 RLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWF 191
            L+   +S N++ G    V ++   NL +LD+  NNF   +P     + L  + ++ N  
Sbjct: 176 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 232
Query: 192 RGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE 250
            G     I   +  + + +SSN F G +P     +K LQ + L EN+ +G +P  + SG 
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL-SGA 289
Query: 251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSAD-ICKLPHLLNFTFSN 309
              LT  D+  N F+G+VP  F + + +  L +S N  +G +  D + K+  L     S 
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 310 NFFQGMAMECIS 321
           N F G   E ++
Sbjct: 350 NEFSGELPESLT 361

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 156/375 (41%), Gaps = 59/375 (15%)
Query: 19  NDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQ--YNGVLCD 76
           N+F  +  + D   +   +K+  +    F   +     N + + +  D+    ++G +  
Sbjct: 328 NNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 77  VFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEE 136
               N +  +  + L        +PP +    +L+  H + N L G IP +  ++ +L +
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 137 FDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSI 195
             +  N L G  P   +  K    L L FN+  GE+P  L   T L+ I L++N   G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 196 PETIG--ESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEI--GSGEY 251
           P+ IG  E+LA  + LS+N+F+G +P  +G  + L  + L  N  +G +P+ +   SG+ 
Sbjct: 507 PKWIGRLENLA-ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Query: 252 K-------------------------NLTVF-----------------DIRSNKFHGSVP 269
                                     NL  F                 +I S  + G   
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF 329
            +F N  ++M LD+S NML+G++  +I  +P+L        F   +    ISGS  D   
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--------FILNLGHNDISGSIPDEVG 677
Query: 330 EEKGNCLAEMEYQKL 344
           + +G  + ++   KL
Sbjct: 678 DLRGLNILDLSSNKL 692

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 9/192 (4%)
Query: 133 RLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWF 191
            L+   +S N++ G    V ++   NL +LD+  NNF   +P     + L  + ++ N  
Sbjct: 179 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235
Query: 192 RGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE 250
            G     I   +  + + +SSN F G +P     +K LQ + L EN+ +G +P  + SG 
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL-SGA 292
Query: 251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSAD-ICKLPHLLNFTFSN 309
              LT  D+  N F+G+VP  F + + +  L +S N  +G +  D + K+  L     S 
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 310 NFFQGMAMECIS 321
           N F G   E ++
Sbjct: 353 NEFSGELPESLT 364

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 109/259 (42%), Gaps = 40/259 (15%)
Query: 65  TDVCQYN--GVLCDVFIDNQERFVAMIDLNKAEIAAH--LPPEMGWL--LDLIYFHANTN 118
           TD C     GVLCD   D Q   V  +DL+   +     +P  +  L  L+ +Y     N
Sbjct: 31  TDCCNRTWLGVLCDT--DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-GGIN 87
Query: 119 RLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ 178
            L G IP   A + +L    +++  + G  P      K  + LD  +N   G LPP +  
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 179 -TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSI------------- 222
              L  I  + N   G+IP++ G    L   + +S N  TG +P +              
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 223 ----------GYMKELQEIILMENQLSGCLPSEIGS-GEYKNLTVFDIRSNKFHGSVPQS 271
                     G  K  Q+I L +N L+     ++G  G  KNL   D+R+N+ +G++PQ 
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 272 FANLNNIMRLDISDNMLTG 290
              L  +  L++S N L G
Sbjct: 264 LTQLKFLHSLNVSFNNLCG 282

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 22/245 (8%)
Query: 72  GVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANM 131
           G +C        R V   DL   ++   LPP+   LLDL       N++  I    F N+
Sbjct: 22  GPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTA-LLDL-----QNNKITEIKDGDFKNL 75
Query: 132 HRLEEFDVSNNRL--VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHN 189
             L    + NN++  + P     L     LYL     N   ELP ++ +T L  + ++ N
Sbjct: 76  KNLHTLILINNKISKISPGAFAPLVKLERLYLS---KNQLKELPEKMPKT-LQELRVHEN 131
Query: 190 WFRGSIPETIGESLARYIV--LSSNNF--TGCLPRSIGYMKELQEIILMENQLSGCLPSE 245
                + +++   L + IV  L +N    +G    +   MK+L  I + +  ++      
Sbjct: 132 EIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-----T 185
Query: 246 IGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF 305
           I  G   +LT   +  NK       S   LNN+ +L +S N ++   +  +   PHL   
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 306 TFSNN 310
             +NN
Sbjct: 246 HLNNN 250

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 22/245 (8%)
Query: 72  GVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANM 131
           G +C        R V   DL   ++   LPP+   LLDL       N++  I    F N+
Sbjct: 22  GPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTA-LLDL-----QNNKITEIKDGDFKNL 75
Query: 132 HRLEEFDVSNNRL--VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHN 189
             L    + NN++  + P     L     LYL     N   ELP ++ +T L  + ++ N
Sbjct: 76  KNLHTLILINNKISKISPGAFAPLVKLERLYLS---KNQLKELPEKMPKT-LQELRVHEN 131
Query: 190 WFRGSIPETIGESLARYIV--LSSNNF--TGCLPRSIGYMKELQEIILMENQLSGCLPSE 245
                + +++   L + IV  L +N    +G    +   MK+L  I + +  ++      
Sbjct: 132 EIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-----T 185
Query: 246 IGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF 305
           I  G   +LT   +  NK       S   LNN+ +L +S N ++   +  +   PHL   
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 306 TFSNN 310
             +NN
Sbjct: 246 HLNNN 250

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	629
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-28
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-21
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-20
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-19
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-16
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-28
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-26
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-24
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	7e-16
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-19
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-19
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-18
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-18
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-18
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-17
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-16
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-15
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-15
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-14
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	7e-14
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-13
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-12
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-12
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-11
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-10
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-09
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-13
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-12
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-12
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	9e-10
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-06
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-13
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-13
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-12
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-11
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-10
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-13
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-13
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-12
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	5e-12
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-11
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-10
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	9e-10
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-08
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-10
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-07
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-07
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	3e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	5e-10
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-09
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	6e-09
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-08
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	1e-07
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	2e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	9e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	7e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	9e-08
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-07
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	4e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	9e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	6e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	3e-07
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	3e-07
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	4e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	5e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	8e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	3e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	5e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	8e-05
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	3e-07
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	1e-06
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	1e-05
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	1e-05
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	9e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	5e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	9e-07
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	1e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	2e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	3e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	8e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-07
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	8e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	8e-07
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	3e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	5e-06
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
1rh1_A	511	Colicin B; FEPA, cytotoxic bacterial protein, TONB	1e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	8e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	3e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	6e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	9e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	2e-05
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	1e-04
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	2e-04
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	2e-05
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	1e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	1e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	3e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	4e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	4e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	6e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	7e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	4e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	8e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	1e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	3e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	4e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	5e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	5e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	7e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	7e-05
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	8e-05
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	1e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	6e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	9e-05
3a58_A	320	Exocyst complex component SEC3; protein complex, P	2e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	2e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	4e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	6e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	8e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	8e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	8e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-04
2iya_A	424	OLEI, oleandomycin glycosyltransferase; carbohydra	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2vg3_A	284	Undecaprenyl pyrophosphate synthetase; transferase	2e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	2e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	2e-04
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	3e-04
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	6e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	4e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	4e-04
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	5e-04
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	4e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	4e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	8e-04
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	5e-04
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	5e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	6e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  191 bits (487), Expect = 6e-56
 Identities = 71/281 (25%), Positives = 112/281 (39%), Gaps = 19/281 (6%)

Query: 44  LQAFKKAIYSDPYNHTENWV-GTDVCQYN--GVLCDVFIDNQERFVAMIDLNKAEIA--A 98
           L   KK +  +P     +W+  TD C     GVLCD     Q   V  +DL+   +    
Sbjct: 11  LLQIKKDL-GNPT-TLSSWLPTTDCCNRTWLGVLCDTD--TQTYRVNNLDLSGLNLPKPY 66

Query: 99  HLPPEMGWLLDLIYFH-ANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            +P  +  L  L + +    N L G IP   A + +L    +++  + G  P   L+  +
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIK 125

Query: 158 NL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNN 213
            L  LD  +N   G LPP +     L  I  + N   G+IP++ G    L   + +S N 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 214 FTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA 273
            TG +P +   +  L  + L  N L G      GS   KN     +  N     +     
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD--KNTQKIHLAKNSLAFDLG-KVG 241

Query: 274 NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
              N+  LD+ +N + G +   + +L  L +   S N   G
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRN 158
                 G   +    H   N L   + +       L   D+ NNR+ G  P   LT  + 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKF 269

Query: 159 L-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIP 196
           L  L++ FNN  GE+P        D+    +N      P
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  195 bits (497), Expect = 1e-53
 Identities = 69/223 (30%), Positives = 103/223 (46%), Gaps = 10/223 (4%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIP-ETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            +PP  G    L     ++N   G +P +T   M  L+  D+S N   G  P        
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368

Query: 158 NL-YLDLRFNNFEGELPPELFQ---TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSS 211
           +L  LDL  NNF G + P L Q     L  ++L +N F G IP T+     L   + LS 
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-VSLHLSF 427

Query: 212 NNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS 271
           N  +G +P S+G + +L+++ L  N L G +P E+     K L    +  N   G +P  
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV--KTLETLILDFNDLTGEIPSG 485

Query: 272 FANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
            +N  N+  + +S+N LTG +   I +L +L     SNN F G
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  177 bits (452), Expect = 1e-47
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 7/220 (3%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL 159
               +    +L   + ++N+  G IP     +  L+   ++ N+  G  P         L
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 160 -YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFT 215
             LDL  N+F G +PP     + L+ + L+ N F G +P      +   + + LS N F+
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 216 GCLPRSIGYMK-ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN 274
           G LP S+  +   L  + L  N  SG +   +       L    +++N F G +P + +N
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 275 LNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
            + ++ L +S N L+G + + +  L  L +     N  +G
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  177 bits (450), Expect = 2e-47
 Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 15/244 (6%)

Query: 100 LPPEMGWLL-DLIYFHANTNRLCGIIPETFANMHR--LEEFDVSNNRLVGPFPTVALTWK 156
           LP  +  L   L+    ++N   G I        +  L+E  + NN   G  P   L+  
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNC 417

Query: 157 RNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSN 212
             L  L L FN   G +P  L   + L  + L  N   G IP+ +    +L   ++L  N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL-ETLILDFN 476

Query: 213 NFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSF 272
           + TG +P  +     L  I L  N+L+G +P  IG    +NL +  + +N F G++P   
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR--LENLAILKLSNNSFSGNIPAEL 534

Query: 273 ANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEK 332
            +  +++ LD++ N+  G + A + K    +    + NF  G     I            
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI----AANFIAGKRYVYIKNDGMKKECHGA 590

Query: 333 GNCL 336
           GN L
Sbjct: 591 GNLL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  175 bits (445), Expect = 1e-46
 Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 10/223 (4%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMH-RLEEFDVSNNRLVGPFP-TVALTW 155
            LP +    +  L     + N   G +PE+  N+   L   D+S+N   GP    +    
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 156 KRNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSS 211
           K  L  L L+ N F G++PP L   + L  + L+ N+  G+IP ++G    L R + L  
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL-RDLKLWL 451

Query: 212 NNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS 271
           N   G +P+ + Y+K L+ +IL  N L+G +PS + +    NL    + +N+  G +P+ 
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN--CTNLNWISLSNNRLTGEIPKW 509

Query: 272 FANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
              L N+  L +S+N  +G + A++     L+    + N F G
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  160 bits (406), Expect = 1e-41
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 14/229 (6%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRN 158
            +PP +    +L+  H + N L G IP +  ++ +L +  +  N L G  P   L + + 
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKT 467

Query: 159 L-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNF 214
           L  L L FN+  GE+P  L   T L+ I L++N   G IP+ IG   +L   + LS+N+F
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL-AILKLSNNSF 526

Query: 215 TGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN 274
           +G +P  +G  + L  + L  N  +G +P+ +        +   I +N   G       N
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-----KQS-GKIAANFIAGKRYVYIKN 580

Query: 275 LNNIMRLDISDNM--LTGFVSADICKLPHLLNFTFSNNFFQGMAMECIS 321
                    + N+    G  S  + +L        ++  + G       
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  159 bits (404), Expect = 3e-41
 Identities = 58/285 (20%), Positives = 104/285 (36%), Gaps = 32/285 (11%)

Query: 44  LQAFKKAIYSDPYNHTENW-VGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAA---H 99
           L +FK  +  D  N   +W    + C ++GV C       +  V  IDL+   +      
Sbjct: 17  LISFKDVL-PDK-NLLPDWSSNKNPCTFDGVTCR------DDKVTSIDLSSKPLNVGFSA 68

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL 159
           +   +  L  L     + + + G +   F     L   D+S N L GP     LT   + 
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVT--TLTSLGSC 125

Query: 160 ----YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA----RYIVL 209
               +L++  N  +             L+++ L+ N   G+       S      +++ +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 210 SSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP 269
           S N  +G +   +     L+ + +  N  S  +P  +G      L   DI  NK  G   
Sbjct: 186 SGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGD--CSALQHLDISGNKLSGDFS 240

Query: 270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
           ++ +    +  L+IS N   G +      L  L   + + N F G
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTG 283

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (385), Expect = 7e-39
 Identities = 49/219 (22%), Positives = 78/219 (35%), Gaps = 10/219 (4%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL 159
           +P  +G L +L     + N   G IP    +   L   D++ N   G  P          
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA----AMFKQ 561

Query: 160 YLDLRFNNFEGELPPELFQ-TGLDIIFL--NHNWFRGSIPETIGE-SLARYIVLSSNNFT 215
              +  N   G+    +             N   F+G   E +   S      ++S  + 
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 216 GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL 275
           G    +      +  + +  N LSG +P EIGS     L + ++  N   GS+P    +L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS--MPYLFILNLGHNDISGSIPDEVGDL 679

Query: 276 NNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
             +  LD+S N L G +   +  L  L     SNN   G
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (384), Expect = 1e-38
 Identities = 51/223 (22%), Positives = 85/223 (38%), Gaps = 18/223 (8%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPT-----VALT 154
           +P  +G L  L       N L G IP+    +  LE   +  N L G  P+       L 
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493

Query: 155 WKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSS 211
           W     + L  N   GE+P  + +   L I+ L++N F G+IP  +G   SL  ++ L++
Sbjct: 494 W-----ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNT 547

Query: 212 NNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS 271
           N F G +P ++          +  N ++G     I +   K          +F G   + 
Sbjct: 548 NLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 272 FANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
              L+     +I+  +  G  S        ++    S N   G
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  138 bits (351), Expect = 2e-34
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 18/221 (8%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTV--ALTWK 156
           ++P E+G    LI+   NTN   G IP             ++ N + G           K
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMK 584

Query: 157 RNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNF 214
           +  +       F+G    +L + +  +   +    + G    T        ++ +S N  
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 215 TGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN 274
           +G +P+ IG M  L  + L  N +SG +P E+G    + L + D+ SNK  G +PQ+ + 
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD--LRGLNILDLSSNKLDGRIPQAMSA 702

Query: 275 LNNIMRLDISDNMLTGFVSADICKLPHLLNF-TFSNNFFQG 314
           L  +  +D+S+N L+G        +P +  F TF    F  
Sbjct: 703 LTMLTEIDLSNNNLSG-------PIPEMGQFETFPPAKFLN 736

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.5 bits (202), Expect = 3e-16
 Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 52/192 (27%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF 148
              N  E       ++  L      +  +    G    TF N   +   D+S N L    
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML---- 644

Query: 149 PTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYI 207
                                G +P E+     L    LN                    
Sbjct: 645 --------------------SGYIPKEIGSMPYL--FILN-------------------- 662

Query: 208 VLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS 267
            L  N+ +G +P  +G ++ L  + L  N+L G +P  + +     LT  D+ +N   G 
Sbjct: 663 -LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA--LTMLTEIDLSNNNLSGP 719

Query: 268 VPQS--FANLNN 277
           +P+   F     
Sbjct: 720 IPEMGQFETFPP 731

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  137 bits (346), Expect = 3e-34
 Identities = 41/240 (17%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWK-RN 158
             P  G  + L   +   N++  I         ++E    ++N+L    P +        
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSV 403

Query: 159 L-YLDLRFNNFEG-------ELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLARYI 207
           +  +D  +N            L P  F+   +  I L++N       E       L   I
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL-SSI 462

Query: 208 VLSSNNFTG-------CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR 260
            L  N  T            +      L  I L  N+L+  L  +  +     L   D+ 
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLS 521

Query: 261 SNKFHGSVPQSFANLNNIMRLDI------SDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
            N F    P    N + +    I        N         I   P L      +N  + 
Sbjct: 522 YNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (339), Expect = 3e-33
 Identities = 32/243 (13%), Positives = 79/243 (32%), Gaps = 24/243 (9%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG-PFPTVALTWKRN 158
              +   L DL             +P     +  ++  +V+ NR +             +
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 159 L-------YLDLRFNNF-EGELPPELFQ-TGLDIIFLNHNWFRGSIPETIG--ESLARYI 207
                    + + +NN     +   L +   L ++   +N   G +P   G    L   +
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKL-ASL 358

Query: 208 VLSSNNFTGCLPRSI-GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
            L+ N  T  +P +  G+ ++++ +    N+L   +P+   +     ++  D   N+   
Sbjct: 359 NLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 267 -------SVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMEC 319
                   +  +     N+  +++S+N ++ F          L +     N    +    
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 320 ISG 322
           +  
Sbjct: 477 LKD 479

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  129 bits (325), Expect = 2e-31
 Identities = 35/246 (14%), Positives = 71/246 (28%), Gaps = 39/246 (15%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGI--------IPETFANMHRLEEFDVSNNRL-VGPFPT 150
           LP  +  L ++   +   NR                     +++   +  N L   P  T
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 151 V--ALTWKRNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLA-- 204
               +     L  L+  +N  EG   P       L  + L +N     IP          
Sbjct: 325 SLQKMK---KLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQV 379

Query: 205 RYIVLSSNNFTGCLPR--SIGYMKELQEIILMENQLSGC-------LPSEIGSGEYKNLT 255
             +  + N     +P       +  +  I    N++          L      G   N++
Sbjct: 380 ENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG--INVS 436

Query: 256 VFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGF-------VSADICKLPHLLNFTFS 308
             ++ +N+      + F+  + +  +++  NMLT          + +      L +    
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 309 NNFFQG 314
            N    
Sbjct: 497 FNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  121 bits (305), Expect = 5e-29
 Identities = 35/219 (15%), Positives = 64/219 (29%), Gaps = 26/219 (11%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWK--- 156
           L P     +++   + + N++     E F+    L   ++  N L    P  +L  +   
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENEN 483

Query: 157 ----RNL-YLDLRFNNFEGELPPELFQ---TGLDIIFLNHNWFRGSIPETIGE------- 201
                 L  +DLRFN     L  +        L  I L++N F    P            
Sbjct: 484 FKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541

Query: 202 SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRS 261
            +        N      P  I     L ++ +  N +   +  +I      N++V DI+ 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP----NISVLDIKD 596

Query: 262 NKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLP 300
           N                    +  +        D   + 
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  120 bits (303), Expect = 1e-28
 Identities = 38/321 (11%), Positives = 83/321 (25%), Gaps = 55/321 (17%)

Query: 41  YVGLQAFKKAI-------YSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNK 93
           Y+ L+    A+                NW         G    V +++  R V  + L  
Sbjct: 32  YLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGR-VTGLSLEG 90

Query: 94  AEIAAHLPPEMGWLLDLIYFHANTNRLCG----IIPETFANMHRLEEFDVSNNRLVGPF- 148
              +  +P  +G L +L      ++          P+  +     E+           F 
Sbjct: 91  FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFV 150

Query: 149 -------------------------PTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLD 182
                                       +    ++  +    NN    +   + + T L 
Sbjct: 151 DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR 209

Query: 183 IIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL 242
             ++ ++ F         E+                      +K+L ++ +        L
Sbjct: 210 QFYMGNSPFVAENICEAWENEN----SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 243 PSEIGSGEYKNLTVFDIRSNKFH--------GSVPQSFANLNNIMRLDISDNML-TGFVS 293
           P+ + +     + + ++  N+                      I  + I  N L T  V 
Sbjct: 266 PTFLKA--LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 294 ADICKLPHLLNFTFSNNFFQG 314
             + K+  L       N  +G
Sbjct: 324 TSLQKMKKLGMLECLYNQLEG 344

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 7/69 (10%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRN 158
             P  +     L      +N +  +  +   N   +   D+ +N  +    +    +   
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 159 LYLDLRFNN 167
               L ++ 
Sbjct: 614 GMYMLFYDK 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (347), Expect = 3e-34
 Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 14/227 (6%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            L  +   +  +L   H  +N +  I    F     L   D+S+N L             
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLE 145

Query: 158 NL-YLDLRFNNFEGELPPELFQ----TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLS 210
           NL  L L  N  +  L  E       + L  + L+ N  +   P        L   + L+
Sbjct: 146 NLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL-FGLFLN 203

Query: 211 SNNFTGCLPRSIGY---MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS 267
           +      L   +        ++ + L  +QLS    +     ++ NLT+ D+  N  +  
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 268 VPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
              SFA L  +    +  N +    S  +  L ++       +F + 
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  133 bits (336), Expect = 7e-33
 Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 16/223 (7%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           L+L       N+L  +    F    +L   DV  N +    P         L  L+L+ N
Sbjct: 30  LNL-----THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHN 83

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSI 222
                L  + F   T L  + L  N  +        +  +L   + LS N  +     + 
Sbjct: 84  ELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL-ITLDLSHNGLSSTKLGTQ 141

Query: 223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD 282
             ++ LQE++L  N++      E+      +L   ++ SN+     P  F  +  +  L 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

Query: 283 ISDNMLTGFVSADIC---KLPHLLNFTFSNNFFQGMAMECISG 322
           +++  L   ++  +C       + N + SN+     +     G
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (333), Expect = 2e-32
 Identities = 49/245 (20%), Positives = 79/245 (32%), Gaps = 21/245 (8%)

Query: 88  MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP 147
              ++ A +         WL  L + +   N + GI    F  +  L+   +SN+     
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 148 FPT----VALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE 201
             T    V+L       L+L  N     +  + F     L+++ L  N     +      
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 202 SLA--RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC--LPSEIGSGEYKNLTVF 257
            L     I LS N +      S   +  LQ ++L    L      PS       +NLT+ 
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP--LRNLTIL 485

Query: 258 DIRSNKFHGSVPQSFANLNNIMRLDISDNMLT--------GFVSADICKLPHLLNFTFSN 309
           D+ +N            L  +  LD+  N L         G     +  L HL      +
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 310 NFFQG 314
           N F  
Sbjct: 546 NGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  131 bits (331), Expect = 3e-32
 Identities = 49/236 (20%), Positives = 82/236 (34%), Gaps = 13/236 (5%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF 148
           +D+    I+   P     L  L   +   N L  +  +TFA    L E  + +N +    
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 149 PTVALTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE---- 201
                  ++NL  LDL  N                L  + L++N  +    E +      
Sbjct: 114 NN-PFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

Query: 202 SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEY-KNLTVFDIR 260
           SL + + LSSN      P     +  L  + L   QL   L  ++       ++    + 
Sbjct: 172 SL-KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 261 SNKFHGSVPQSFANLN--NIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
           +++   +   +F  L   N+  LD+S N L    +     LP L  F    N  Q 
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (322), Expect = 4e-31
 Identities = 43/225 (19%), Positives = 70/225 (31%), Gaps = 15/225 (6%)

Query: 110 LIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNF 168
                 +   L  I   +F  +  LE  ++ +N + G   +   T   NL YL L  +  
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFT 365

Query: 169 E-GELPPELF----QTGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRS 221
               L  E F     + L I+ L  N       +       L   + L  N     L   
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL-EVLDLGLNEIGQELTGQ 424

Query: 222 -IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG--SVPQSFANLNNI 278
               ++ + EI L  N+      +        +L    +R        S P  F  L N+
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFA--LVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 279 MRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323
             LD+S+N +       +  L  L      +N    +      G 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (320), Expect = 1e-30
 Identities = 46/245 (18%), Positives = 76/245 (31%), Gaps = 25/245 (10%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            +         +LI    + N L      T   +  L+E  +SNN++     +  L    
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFA 169

Query: 158 N---LYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA----RYIV 208
           N     L+L  N  +    P  F     L  +FLN+     S+ E +   LA    R + 
Sbjct: 170 NSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 209 LSSNNFTGCLPRSIGYMK--ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
           LS++  +     +   +K   L  + L  N L+              L  F +  N    
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW--LPQLEYFFLEYNNIQH 286

Query: 267 SVPQSFANL---------NNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM 317
               S   L          +  +  IS   L          L  L +    +N   G+  
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 318 ECISG 322
              +G
Sbjct: 347 NMFTG 351

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  124 bits (313), Expect = 7e-30
 Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 22/222 (9%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           L+L       N++  I  + F+ +  LE  D+  N +             N+  + L +N
Sbjct: 386 LNLTK-----NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRG--SIPETIG--ESLARYIVLSSNNFTGCLPR 220
            +   L    F     L  + L     +   S P       +L   + LS+NN       
Sbjct: 441 KYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDD 498

Query: 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEY-------KNLTVFDIRSNKFHGSVPQSFA 273
            +  +++L+ + L  N L+  L      G          +L + ++ SN F     + F 
Sbjct: 499 MLEGLEKLEILDLQHNNLA-RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 274 NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315
           +L  +  +D+  N L    ++       L +     N    +
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (312), Expect = 9e-30
 Identities = 43/245 (17%), Positives = 90/245 (36%), Gaps = 20/245 (8%)

Query: 88  MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP 147
           M+DL+   +         WL  L YF    N +  +   +   +  +   ++  +     
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 148 FPTVALT--------WKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFR-GSI 195
               +L         W + L +L++  N+  G +   +F     L  + L++++    ++
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 196 PETIGESLA----RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEY 251
                 SLA      + L+ N  +     +  ++  L+ + L  N++   L  +   G  
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG-L 429

Query: 252 KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSAD--ICKLPHLLNFTFSN 309
           +N+    +  NK+      SFA + ++ RL +    L    S+      L +L     SN
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 310 NFFQG 314
           N    
Sbjct: 490 NNIAN 494

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (308), Expect = 2e-29
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 29/227 (12%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMH--RLEEFDVSNNRLVGPFPTV--ALTWKRNL-YLD 162
           L L       N++  +  E         L++ ++S+N++    P    A+     L  L 
Sbjct: 150 LLLSN-----NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG---RLFGLF 201

Query: 163 LRFNNFEGELPPELFQ----TGLDIIFLNHNWFRGSIPETIGE----SLARYIVLSSNNF 214
           L        L  +L      T +  + L+++    +   T       +L   + LS NN 
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL-TMLDLSYNNL 260

Query: 215 TGCLPRSIGYMKELQEIILMENQLSGCLPSEIGS-------GEYKNLTVFDIRSNKFHGS 267
                 S  ++ +L+   L  N +       +            ++ T   I        
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 268 VPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
              SF  L  +  L++ DN + G  S     L +L   + SN+F   
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (264), Expect = 8e-24
 Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 15/197 (7%)

Query: 133 RLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHN 189
             E  D S+ +L    P    T   N+  L+L  N     LP   F   + L  + +  N
Sbjct: 5   SHEVADCSHLKLTQ-VPDDLPT---NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59

Query: 190 WFRGSIPETIG--ESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIG 247
                 PE       L + + L  N  +    ++  +   L E+ LM N +     +   
Sbjct: 60  TISKLEPELCQKLPML-KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 248 SGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADI--CKLPHLLNF 305
               KNL   D+  N    +   +   L N+  L +S+N +    S ++       L   
Sbjct: 119 KQ--KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 306 TFSNNFFQGMAMECISG 322
             S+N  +  +  C   
Sbjct: 177 ELSSNQIKEFSPGCFHA 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.8 bits (239), Expect = 8e-21
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 22/193 (11%)

Query: 118 NRLCGI--IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFE----- 169
             L  +   P  F  +  L   D+SNN +        L     L  LDL+ NN       
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 170 --GELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIG 223
                P    +  + L I+ L  N F     E   +   L + I L  NN          
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL-KIIDLGLNNLNTLPASVFN 581

Query: 224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP-----QSFANLNNI 278
               L+ + L +N ++  +  ++    ++NLT  D+R N F  +        ++ N  + 
Sbjct: 582 NQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHT 640

Query: 279 MRLDISDNMLTGF 291
              ++S + L   
Sbjct: 641 NIPELSSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 11/158 (6%)

Query: 90  DLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFP 149
            L K          +  L  L   +  +N    I  E F ++  L+  D+  N L     
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 150 TVALTWKRNL-YLDLRFNNFEGELPPELFQTG---LDIIFLNHNWFRGSIPETIGESLAR 205
           +     + +L  L+L+ N     +  ++F      L  + +  N F  +           
Sbjct: 578 S-VFNNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNPFDCTCES--IAWFVN 633

Query: 206 YIVLSSNNFTGCLPRSI--GYMKELQEIILMENQLSGC 241
           +I  +  N    L                +     S C
Sbjct: 634 WINETHTNIPE-LSSHYLCNTPPHYHGFPVRLFDTSSC 670

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  130 bits (328), Expect = 5e-32
 Identities = 42/214 (19%), Positives = 79/214 (36%), Gaps = 13/214 (6%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN 166
            LDL     N     G   ++      L+  D+S N ++    +  L  ++  +LD + +
Sbjct: 351 FLDLSR---NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 406

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSSNNFTGCL-PRS 221
           N +      +F     L  + ++H   R +         SL   + ++ N+F     P  
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDI 465

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281
              ++ L  + L + QL    P+   S    +L V ++  N F       +  LN++  L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSL--SSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 282 DISDNMLTGFVSADICKLP-HLLNFTFSNNFFQG 314
           D S N +      ++   P  L     + N F  
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  124 bits (314), Expect = 4e-30
 Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 7/204 (3%)

Query: 116 NTNRLCGIIPETFANMHRLEEFDVSNNRL--VGPFPTVALTWKRNLYLDLRFNNFEGELP 173
                 G    +  ++  LE  D+S N L   G             YLDL FN     + 
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS 389

Query: 174 PELFQ-TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRSIGYMKELQE 230
                   L+ +   H+  +     ++  SL    Y+ +S  +           +  L+ 
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 231 IILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG 290
           + +  N        +I +   +NLT  D+   +     P +F +L+++  L++S N    
Sbjct: 450 LKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 291 FVSADICKLPHLLNFTFSNNFFQG 314
             +     L  L    +S N    
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMT 532

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (293), Expect = 2e-27
 Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 24/224 (10%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIP-ETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            +      L  L +     + L  +     F ++  L   D+S+      F         
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLS 445

Query: 158 NL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSSN 212
           +L  L +  N+F+    P++F     L  + L+        P       SL + + +S N
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-QVLNMSHN 504

Query: 213 NFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP-QS 271
           NF          +  LQ +    N +      E+      +L   ++  N F  +   QS
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFACTCEHQS 563

Query: 272 FAN-LNNIMRLDISDNMLTGFVSADICKLPH------LLNFTFS 308
           F   + +  +L +    +        C  P       +L+   +
Sbjct: 564 FLQWIKDQRQLLVEVERME-------CATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (289), Expect = 5e-27
 Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 22/218 (10%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           LDL +     N L  +   +F +   L+  D+S   +       A     +L  L L  N
Sbjct: 33  LDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGN 86

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGC-LPRS 221
             +  L    F   + L  +              IG   +L + + ++ N      LP  
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEY 144

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVF----DIRSNKFHGSVPQSFANLNN 277
              +  L+ + L  N++     +++       + +     D+  N  +   P +F  +  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVL--HQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 278 IMRLDISDNMLTGFVSADICK-LPHLLNFTFSNNFFQG 314
           + +L + +N  +  V     + L  L         F+ 
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (269), Expect = 1e-24
 Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 11/173 (6%)

Query: 160 YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTG 216
            LDL FN          F    L ++ L+    +            L   ++L+ N    
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL-STLILTGNPIQS 90

Query: 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG-SVPQSFANL 275
               +   +  LQ+++ +E  L+      IG    K L   ++  N      +P+ F+NL
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGH--LKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 276 NNIMRLDISDNMLTGFVSADICKLPHLLNFTF----SNNFFQGMAMECISGSR 324
            N+  LD+S N +      D+  L  +         S N    +        R
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  106 bits (266), Expect = 3e-24
 Identities = 32/224 (14%), Positives = 63/224 (28%), Gaps = 20/224 (8%)

Query: 101 PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL- 159
                   +L     +   +  I    + ++  L    ++ N +       A +   +L 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQ 103

Query: 160 YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRG-SIPETIG--ESLARYIVLSSNNF 214
            L     N    L          L  + + HN  +   +PE      +L  ++ LSSN  
Sbjct: 104 KLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKI 161

Query: 215 TGCLPRSIGYMKELQ----EIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ 270
                  +  + ++      + L  N ++   P          L    +R+N    +V +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE---IRLHKLTLRNNFDSLNVMK 218

Query: 271 -SFANLNNIMRLDISDNMLTGF---VSADICKLPHLLNFTFSNN 310
                L  +    +              D   L  L N T    
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  102 bits (256), Expect = 6e-23
 Identities = 32/232 (13%), Positives = 67/232 (28%), Gaps = 19/232 (8%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            L       L  L    A    L  +      ++  L+E +V++N +         +   
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 158 NL-YLDLRFNNFEGELPPELFQ--TGLDIIF----LNHNWFRGSIPETIGESLARYIVLS 210
           NL +LDL  N  +  +     +    + ++     L+ N      P    E     + L 
Sbjct: 150 NLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 211 SNNFTGCLPR-SIGYMKELQEIILMENQLSGCLP-SEIGSGEYKNLTVFDIRSNK----- 263
           +N  +  + +  I  +  L+   L+  +        +      + L    I   +     
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 264 -FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
            +   +   F  L N+    +    +      D        +    N  F  
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQ 318

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.6 bits (246), Expect = 1e-21
 Identities = 39/248 (15%), Positives = 70/248 (28%), Gaps = 21/248 (8%)

Query: 88  MIDLNKAEIAAHLPPEMGW------LLDLIYFH-ANTNRLCGIIPETFANMHRL--EEFD 138
            + L     + ++            +  L+     N   L          +  L  EEF 
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 139 VSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPE 197
           ++                 N+    L     E  +    +  G   + L +  F G  P 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKF-GQFP- 320

Query: 198 TIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS--GCLPSEIGSGEYKNLT 255
                L     L+  +  G    S   +  L+ + L  N LS  GC           +L 
Sbjct: 321 --TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG--TTSLK 376

Query: 256 VFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADI-CKLPHLLNFTFSNNFFQG 314
             D+  N     +  +F  L  +  LD   + L       +   L +L+    S+   + 
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 315 MAMECISG 322
                 +G
Sbjct: 436 AFNGIFNG 443

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 2e-17
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN 253
            IP+ +  S  + + LS N        S     ELQ + L   ++         S    +
Sbjct: 21  KIPDNLPFST-KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS--LSH 77

Query: 254 LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
           L+   +  N        +F+ L+++ +L   +  L    +  I  L  L     ++N  Q
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 314 GM 315
             
Sbjct: 138 SF 139

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 8e-14
 Identities = 21/147 (14%), Positives = 45/147 (30%), Gaps = 22/147 (14%)

Query: 89  IDLNKAEIAAHLPPE-MGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP 147
           + +       +  P+    L +L +   +  +L  + P  F ++  L+  ++S+N     
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 148 FPTVALTWKRNL-YLDLRFNNFEGELPPELFQ---TGLDIIFLNHN---------WFRGS 194
                     +L  LD   N+       +  Q   + L  + L  N          F   
Sbjct: 510 DTF-PYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

Query: 195 IPETIGESLARYIVLSSNNFTGCLPRS 221
           I +       R +++         P  
Sbjct: 568 IKDQ------RQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 5/114 (4%)

Query: 209 LSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268
               NF   +P ++      + + L  N L         S  +  L V D+   +     
Sbjct: 14  CMELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIE 68

Query: 269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG 322
             ++ +L+++  L ++ N +          L  L            +    I  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 88  MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP 147
            +DL++ ++    P     L  L   + + N    +    +  ++ L+  D S N ++  
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 148 FPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLD---IIFLNHNWFRGSIPE 197
                  +  +L +L+L  N+F      + F   +     + +       + P 
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (307), Expect = 5e-29
 Identities = 35/241 (14%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGI---------IPETFANMHRLEEFDVSNNRLVGPFPT 150
           LP  +  L +L   +   NR             + +      +++ F +  N L     +
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 151 VALTWKRNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLA--RY 206
            +L     L  LD   N               L  + L++N     IPE           
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEG 623

Query: 207 IVLSSNNFTGCLPR--SIGYMKELQEIILMENQLSGCLPSEIGSG----EYKNLTVFDIR 260
           +  S N     +P   +   +  +  +    N++       I       +  N +   + 
Sbjct: 624 LGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLS 681

Query: 261 SNKFHGSVPQSFANLNNIMRLDISDNMLT-------GFVSADICKLPHLLNFTFSNNFFQ 313
            N+      + FA  + I  + +S+N++T            +      L       N   
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 314 G 314
            
Sbjct: 742 S 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (289), Expect = 8e-27
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 33/239 (13%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPE-TFANMHRLEEFDVSNNRLVGPFPTVA-LTWK 156
            L  +      +  F+   N L       +   M +L   D  +N++             
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-EAFGTNV-- 595

Query: 157 RNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG----ESLARYIVL 209
             L  L L +N  E E+P +       ++ +  +HN  +  IP          +   +  
Sbjct: 596 -KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM-GSVDF 651

Query: 210 SSNNFTGCLPRSIG------YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK 263
           S N       R+I              + L  N++         +G    ++   + +N 
Sbjct: 652 SYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG--SPISTIILSNNL 708

Query: 264 F-------HGSVPQSFANLNNIMRLDISDNMLTGF-VSADICKLPHLLNFTFSNNFFQG 314
                         ++ N   +  +D+  N LT          LP+L N   S N F  
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  114 bits (288), Expect = 9e-27
 Identities = 37/302 (12%), Positives = 84/302 (27%), Gaps = 51/302 (16%)

Query: 41  YVGLQAFKKAI----------YSDPYNHTENW-VGTDVCQYNGVLCDVFIDNQERFVAMI 89
           Y  L+A  +A+            +   H+ NW    ++  +      V +DN  R     
Sbjct: 271 YKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPG-VDLDNNGRVTG-- 327

Query: 90  DLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFP 149
                             L L           G +P+    +  L+      +       
Sbjct: 328 ------------------LSL-----AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 150 TVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFR-----GSIPETIGES 202
                       + R +                L++  L  +          I +    S
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS 424

Query: 203 LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSN 262
           L    + +  N    + ++I  + +LQ I    +  +      +      +    +    
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-DNIAV------DWEDANSDYA 477

Query: 263 KFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG 322
           K + +   S++NL ++  +++ +      +   +  LP L +   + N     A      
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 323 SR 324
           +R
Sbjct: 538 TR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  114 bits (288), Expect = 1e-26
 Identities = 44/239 (18%), Positives = 78/239 (32%), Gaps = 37/239 (15%)

Query: 99  HLPPEMGWLL-DLIYFHANTNRLCGIIPETFA--NMHRLEEFDVSNNRLVG-----PFPT 150
            +P +       +     + N+L   IP  F   +++ +   D S N++           
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 151 VALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA---- 204
                     + L +N  +   P ELF   + +  I L++N    SIPE   +       
Sbjct: 668 DDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYK 725

Query: 205 -----RYIVLSSNNFTGCLPRSI--GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVF 257
                  I L  N  T  L        +  L  + +  N  S   P++  +     L  F
Sbjct: 726 NTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN--SSQLKAF 781

Query: 258 DIR------SNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
            IR       N+     P       ++++L I  N +   V   +   P L     ++N
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  106 bits (267), Expect = 3e-24
 Identities = 32/213 (15%), Positives = 57/213 (26%), Gaps = 32/213 (15%)

Query: 99  HLPPEMGW------LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL-------V 145
                +         ++      + N +     E FA    +    +SNN +       +
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 146 GPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTG---LDIIFLNHNWFRGSIPETIGE- 201
            P             +DLRFN     L  +   T    L  + +++N F  S P      
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNS 775

Query: 202 ------SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLT 255
                  +        N      P  I     L ++ +  N +   +  ++       L 
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLTP----QLY 830

Query: 256 VFDIRSNKF-HGSVPQSFANLNNIMR-LDISDN 286
           + DI  N      V      +   M  L     
Sbjct: 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 12/158 (7%)

Query: 94  AEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPE-TFANMHRLEEFDVSNNRLVG-PFPTV 151
                           L       N+L  +  +     +  L   DVS N     P   +
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773

Query: 152 ALTWKRNLYL----DLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARY 206
             +  +   +    D   N    + P  +     L  + +  N  R  + E +   L   
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQL-YI 831

Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQ---LSGC 241
           + ++ N        S+    E    +L+ ++   + GC
Sbjct: 832 LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGC 869

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score =  120 bits (302), Expect = 3e-28
 Identities = 89/276 (32%), Positives = 102/276 (36%), Gaps = 25/276 (9%)

Query: 365  WGGSPPSTPS-APTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHK 423
            +  SP        +P  +  +P  +  +               ASP              
Sbjct: 1486 YERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGA-ASPYKGVQS-------- 1536

Query: 424  VPPIIVEPPKPSSPTPTTMPPKQEP-PPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPS 482
             P          SP      P   P  P   + P   P   SY P   S  P SP  SP+
Sbjct: 1537 -PGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT 1595

Query: 483  SPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPP-----PVYSPPPPSPPPVS--Y 535
            SP  + ++P  S    SY P   S  P SP  SP+SP      P YSP  PS  P S  Y
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1655

Query: 536  PPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP-PPSSPTPSPSPSPPPPIQS 594
             P   S  P +PS SP  P  SP  PS  P     P  SP  PS    SPS SP  P  S
Sbjct: 1656 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPTSPSYS 1712

Query: 595  P--PPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
            P  P  SP  P  SP  P  SP  P  SP  PS  P
Sbjct: 1713 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 98.6 bits (245), Expect = 2e-21
 Identities = 72/232 (31%), Positives = 96/232 (41%), Gaps = 18/232 (7%)

Query: 366  GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
                  +P   +P  S  +P     +P+ +P +P   + P   P+ P++     P +   
Sbjct: 1530 PYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYS-PTSPSYSPT 1588

Query: 426  PIIVEP----PKPSSPTPTTMPPKQEP--PPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP 479
                 P      P+SP+ +   P   P  P    + P  SP   SY P   S  P SP  
Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1648

Query: 480  SPSSP--PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPP 537
            SP+SP   P   +  P+ P  SY P   S  P SP  SP+SP    + P  SP   SY P
Sbjct: 1649 SPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706

Query: 538  PVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPP 589
               S  P +PS SP  P  SP  PS  P        SP  S  +PS SP+ P
Sbjct: 1707 TSPSYSPTSPSYSPTSPSYSPTSPSYSP-------TSPSYSPTSPSYSPTSP 1751

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 95.5 bits (237), Expect = 2e-20
 Identities = 62/211 (29%), Positives = 70/211 (33%), Gaps = 14/211 (6%)

Query: 429  VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
                        +     + P    +P   SP   S       A   SP+    S     
Sbjct: 1459 YSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREG 1518

Query: 489  STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSP----- 543
                      S    V+SP   SP  S  SP    + P  SP    Y       P     
Sbjct: 1519 FGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSY 1578

Query: 544  -PPTPSLSPPPPVQSP--PPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP--PPT 598
             P +PS SP  P  SP  P  SP    Y     + P  SPT SPS SP  P  SP  P  
Sbjct: 1579 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSA---TSPSYSPT-SPSYSPTSPSYSPTSPSY 1634

Query: 599  SPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
            SP  P  SP  P  SP  P  SP  PS  P 
Sbjct: 1635 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1665

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 90.9 bits (225), Expect = 5e-19
 Identities = 65/212 (30%), Positives = 73/212 (34%), Gaps = 23/212 (10%)

Query: 434  PSSPTPTTMPPKQEPP-----------PLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPS 482
              + TP    P  +             PLVQ           Y          SP     
Sbjct: 1480 EGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGL----LGAASPYKGVQ 1535

Query: 483  SPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPP--PVYSP--PPPSPPPVSYPPP 538
            SP           P      P  SP  P    SP+  P  P YSP  P  SP   SY P 
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT 1595

Query: 539  VRSSPPPTPSLSPPPPVQSP--PPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPP 596
              S  P +PS S   P  SP  P  SP    Y P   S  P+SP+ SP+     P  + P
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSP 1653

Query: 597  PTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
              SP  P  SP  P  SP  P  SP  PS  P
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 82.0 bits (202), Expect = 3e-16
 Identities = 71/208 (34%), Positives = 93/208 (44%), Gaps = 26/208 (12%)

Query: 363  CSWGGSPPSTPSAPT-----PKPSTSTPAQEPKTPAPAPPTPSL-PSPPVASPTPPTWEW 416
              +  SP   PS+P+     P  S ++P+  P +P+ +P +PS   + P  SPT P++  
Sbjct: 1563 PGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYS- 1621

Query: 417  NRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPS 476
                           P   S +PT+       P    + P  SP   SY P   S  P S
Sbjct: 1622 ---------------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1666

Query: 477  PMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP--SPPPVS 534
            P  SP+SP  + ++P  SP   SY P   S  P SP  SP+S  P YSP  P  SP   S
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPS 1724

Query: 535  YPPPVRSSPPPTPSLSPPPPVQSPPPPS 562
            Y P   S  P +PS SP  P  SP  PS
Sbjct: 1725 YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 79.7 bits (196), Expect = 1e-15
 Identities = 52/193 (26%), Positives = 62/193 (32%), Gaps = 13/193 (6%)

Query: 446  QEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVR 505
             +   L+     ++ P ++      S  P          P   S    SP   ++ P V+
Sbjct: 1451 LDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQ 1510

Query: 506  SPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPP 565
                              SP      P    P    S   +P      P  SP  P    
Sbjct: 1511 GGSEGREGFGDYGLLGAASPYKGVQSPGYTSPF---SSAMSPGYGLTSPSYSPSSPGYST 1567

Query: 566  -VLYPP--PVRSP--PPSSPTPSPSPSPPPPIQSP--PPTSPPPPVGSPPPPIQSPPPPV 618
               Y P  P  SP  P  SPT SPS SP  P  SP  P  S   P  SP  P  SP  P 
Sbjct: 1568 SPAYMPSSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPS 1626

Query: 619  QSP--PPPSPPPP 629
             SP  P  SP  P
Sbjct: 1627 YSPTSPSYSPTSP 1639

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (299), Expect = 3e-28
 Identities = 48/240 (20%), Positives = 87/240 (36%), Gaps = 14/240 (5%)

Query: 90  DLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFP 149
           D++  +I+  +   +   + +   +   +    I   TF     L+E D++   L    P
Sbjct: 237 DMDDEDISPAVFEGLC-EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LP 294

Query: 150 TVALTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA-- 204
           +  L     L  L L  N FE  L          L  + +  N  R  +     E+L   
Sbjct: 295 S-GLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 205 RYIVLSSNNFT--GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSN 262
           R + LS ++     C    +  +  LQ + L  N+    L +E        L + D+   
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKE-CPQLELLDLAFT 410

Query: 263 KFHGSVPQS-FANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECIS 321
           +      QS F NL+ +  L++S ++L          LP L +     N F    ++  +
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (283), Expect = 3e-26
 Identities = 39/235 (16%), Positives = 81/235 (34%), Gaps = 14/235 (5%)

Query: 90  DLNKAEIAAHLPPEM-GWLLDLIYFHANTNRLCG-IIPETFANMHRLEEFDVSNNRLVG- 146
            L+  +   +L          L +     N     +      N+  L E D+S++ +   
Sbjct: 307 VLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 147 PFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESL 203
               + L    +L  L+L +N     L  E F+    L+++ L     +    ++  ++L
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 204 A--RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEY-KNLTVFDIR 260
              + + LS +       +    +  LQ + L  N        +  S +    L +  + 
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 261 SNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL-LNFTFSNNFFQG 314
                     +F +L  +  +D+S N LT      +  L  + LN   ++N    
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLN--LASNHISI 537

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (283), Expect = 3e-26
 Identities = 40/236 (16%), Positives = 74/236 (31%), Gaps = 14/236 (5%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF 148
           +DL    ++  LP  +  L  L     + N+   +   + +N   L    +  N      
Sbjct: 283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

Query: 149 PTVALTWKRNL-YLDLRFNNFEG-ELPPELFQ--TGLDIIFLNHNWFRGSIPETIG--ES 202
            T  L    NL  LDL  ++ E  +      +  + L  + L++N       E       
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 203 LARYIVLSSNNFTGCLPRSI-GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRS 261
           L   + L+         +S    +  L+ + L  + L               L   +++ 
Sbjct: 402 L-ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL--PALQHLNLQG 458

Query: 262 NKFHGSVPQ---SFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
           N F     Q   S   L  +  L +S   L+         L  + +   S+N    
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (273), Expect = 5e-25
 Identities = 29/224 (12%), Positives = 63/224 (28%), Gaps = 11/224 (4%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            +          L +       +  I      N   LE   + +N +             
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTE 153

Query: 158 NL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNW-FRGSIPETIGESLA-RYIVLSSN 212
            L  LD + N     L  E          + LN N      I     +S   + +     
Sbjct: 154 KLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 213 NFTGCLPRSIGY--MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ 270
                + + +    ++ L      +       P+        ++   +++ + F      
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 271 SFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
           +F   + +  LD++   L+  + + +  L  L     S N F+ 
Sbjct: 273 TFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  101 bits (253), Expect = 1e-22
 Identities = 40/237 (16%), Positives = 76/237 (32%), Gaps = 15/237 (6%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDL--IYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG 146
           ++LN  +IA  + P          + F    N L        + +  L      +     
Sbjct: 184 LNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 147 PFPTV--ALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG-- 200
             P V   L       ++L+ + F   +    F   +GL  + L        +P  +   
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 201 ESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR 260
            +L + +VLS+N F      S      L  + +  N     L +       +NL   D+ 
Sbjct: 301 STL-KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN-LENLRELDLS 358

Query: 261 SNKFHGS--VPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315
            +    S        NL+++  L++S N      +    + P L     +    +  
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  101 bits (253), Expect = 2e-22
 Identities = 28/236 (11%), Positives = 64/236 (27%), Gaps = 35/236 (14%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L++L +      ++  I  +TF + HRL+   ++ N L+      AL+  + L +L    
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQ 114

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSSNNFTG----- 216
                 +          L+ ++L  N             E L + +   +N         
Sbjct: 115 TGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL-KVLDFQNNAIHYLSKED 172

Query: 217 --------------------CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV 256
                                +          Q +     Q    +   + +   ++L +
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 257 FDIRSNKFHGSVPQSFANL--NNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
                       P  F  L   ++  +++  +      S        L     +  
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.4 bits (230), Expect = 9e-20
 Identities = 31/222 (13%), Positives = 70/222 (31%), Gaps = 40/222 (18%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNN 167
           L+  +     N L  I   TF+ +  L   D++  ++                       
Sbjct: 38  LEFSF-----NVLPTIQNTTFSRLINLTFLDLTRCQIYW--------------------- 71

Query: 168 FEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSSNNFTGCLPRSIG 223
               +  + FQ    LD + L  N         +   ++L +++       +      + 
Sbjct: 72  ----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL-KHLFFIQTGISSIDFIPLH 126

Query: 224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN--IMRL 281
             K L+ + L  N +S     +      + L V D ++N  H    +  ++L     + L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPT--EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 282 DISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323
           +++ N + G +           +  F       +  + +  S
Sbjct: 185 NLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 12/185 (6%)

Query: 110 LIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG--PFPTVALTWKRNL-YLDLRFN 166
           L   + + + L     + F  +  L+  ++  N         T +L     L  L L F 
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGY 224
           +    +    F     ++ + L+HN    S  E +      Y+ L+SN+ +  LP  +  
Sbjct: 487 DLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPI 545

Query: 225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS 284
           + + + I L +N L  C  S I   E+           K   +      N   +  + +S
Sbjct: 546 LSQQRTINLRQNPLD-CTCSNIYFLEWYKEN-----MQKLEDTEDTLCENPPLLRGVRLS 599

Query: 285 DNMLT 289
           D  L+
Sbjct: 600 DVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 1e-15
 Identities = 23/159 (14%), Positives = 41/159 (25%), Gaps = 7/159 (4%)

Query: 158 NLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSSNNFT 215
           N   +        E+P  L  +  + +  + N        T     +L  ++ L+     
Sbjct: 14  NKTYNCENLGLN-EIPGTLPNS-TECLEFSFNVLPTIQNTTFSRLINL-TFLDLTRCQIY 70

Query: 216 GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL 275
                +      L  ++L  N L   +     SG  K L                   N 
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIF-MAETALSG-PKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 276 NNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
             +  L +  N ++            L    F NN    
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 9/134 (6%)

Query: 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEY-- 251
            IP T+  S    +  S N        +   +  L  + L   Q+       I    +  
Sbjct: 26  EIPGTLPNST-ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-----IHEDTFQS 79

Query: 252 -KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
              L    + +N        + +    +  L      ++      +     L +    +N
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 311 FFQGMAMECISGSR 324
               + +     + 
Sbjct: 140 HISSIKLPKGFPTE 153

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 6e-10
 Identities = 13/114 (11%), Positives = 33/114 (28%), Gaps = 5/114 (4%)

Query: 209 LSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268
             +      +P ++      + +    N L     +        NLT  D+   + +   
Sbjct: 19  CENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSR--LINLTFLDLTRCQIYWIH 73

Query: 269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG 322
             +F + + +  L ++ N L       +     L +  F       +    +  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score =  119 bits (299), Expect = 6e-28
 Identities = 84/294 (28%), Positives = 106/294 (36%), Gaps = 25/294 (8%)

Query: 348  CYPVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVA 407
                + +      ++   GG  P +  +           +   +P     +    +    
Sbjct: 1450 LVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFT 1509

Query: 408  SPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEP--PPLVQSPPPSSPPPVSY 465
            +     +           P       P+SP      P   P  P    + P  SP   SY
Sbjct: 1510 AYGGADY------GEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSY 1563

Query: 466  PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPP----- 520
             P   S  P SP  SP+SP  + ++P  SP   SY P   S  P SP  SP+SP      
Sbjct: 1564 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1623

Query: 521  PVYSPPPPSPPPVS--YPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPS 578
            P YSP  PS  P S  Y P   S  P +PS SP  P  SP  PS     Y P   S  P+
Sbjct: 1624 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS-----YSPTSPSYSPT 1678

Query: 579  SPTPSP---SPSPPPPIQSP--PPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
            SP+ SP   S SP  P  SP  P  SP  P  SP  P  SP    Q        
Sbjct: 1679 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score =  114 bits (285), Expect = 3e-26
 Identities = 74/255 (29%), Positives = 86/255 (33%), Gaps = 17/255 (6%)

Query: 386  AQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPK 445
                +              P ++ +        V       ++  P   S          
Sbjct: 1453 YMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVK----DELMFSPLVDSGSNDAMAGGF 1508

Query: 446  QEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVR 505
                        S        P        SP  SP+SP  + ++P  SP   SY P   
Sbjct: 1509 TAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSP 1568

Query: 506  SPPPPSPMPSPSSPPPVYSP--PPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSP----- 558
            S  P SP  SP+SP   YSP  P  SP   SY P   S  P +PS SP  P  SP     
Sbjct: 1569 SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1626

Query: 559  PPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP--PPTSPPPPVGSPPPPIQSPPP 616
             P SP      P      PS    SPS SP  P  SP  P  SP  P  SP  P  SP  
Sbjct: 1627 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1686

Query: 617  PVQSPPPP--SPPPP 629
            P  SP  P  SP  P
Sbjct: 1687 PSYSPTSPNYSPTSP 1701

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score =  109 bits (272), Expect = 1e-24
 Identities = 76/270 (28%), Positives = 98/270 (36%), Gaps = 7/270 (2%)

Query: 361  DECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVP 420
            +                 +    TP               +    + SP   +   + + 
Sbjct: 1448 ESLVKYMPEQKITEIEDGQDGGVTPYSNE--SGLVNADLDVKDELMFSPLVDSGSNDAMA 1505

Query: 421  RHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPP--PSSPPPVSYPPPVRSAPPPSPM 478
                     +  + +SP          P   V SP   P+SP    Y P   +  P SP 
Sbjct: 1506 GGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPT---YSPTSPAYSPTSPS 1562

Query: 479  PSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPP 538
             SP+SP  + ++P  SP   SY P   S  P SP  SP+SP    + P  SP   SY P 
Sbjct: 1563 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1622

Query: 539  VRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPT 598
              S  P +PS SP  P  SP  PS  P        SP  S  +PS SP+ P    + P  
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1682

Query: 599  SPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
            SP  P  SP  P  SP  P  SP  P   P
Sbjct: 1683 SPTSPSYSPTSPNYSPTSPSYSPTSPGYSP 1712

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 80.9 bits (199), Expect = 7e-16
 Identities = 40/186 (21%), Positives = 52/186 (27%), Gaps = 7/186 (3%)

Query: 451  LVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPP 510
            ++         P      +         P  +      +        +  P         
Sbjct: 1444 MIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDA 1503

Query: 511  SPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSP--PPPSPPPVLY 568
                  +     Y             P        +P  SP  P  SP  P  SP    Y
Sbjct: 1504 MAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSY 1563

Query: 569  PPPVRSPPPSSPTPSP-----SPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPP 623
             P   S  P+SP+ SP     SP+ P    + P  SP  P  SP  P  SP  P  SP  
Sbjct: 1564 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1623

Query: 624  PSPPPP 629
            PS  P 
Sbjct: 1624 PSYSPT 1629

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.5 bits (107), Expect = 6e-05
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 367  GSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSL-PSPPVASPTPPTWEWNRVPRHKVP 425
             SP  +P++P+  P++  P+  P +P+ +P +PS  P+ P  SPT P +           
Sbjct: 1615 TSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTS 1672

Query: 426  PIIVEPPKPSSPTPTTMPPKQEPPPLVQSP--PPSSPPPVSYPPPVRSAPPPSPMPSPSS 483
            P       P+SP+ +   P   P     SP  P  SP    Y P   +  P       + 
Sbjct: 1673 P----SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNE 1728

Query: 484  PPPAQ 488
               ++
Sbjct: 1729 NENSR 1733

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (285), Expect = 6e-27
 Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 36/236 (15%)

Query: 99  HLPPEMG-WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
                +     ++     + N L  I     A   +LE  ++S+N L       +L+   
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLS--- 80

Query: 158 NL--------------------YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPE 197
            L                     L    NN    +     Q G   I+L +N        
Sbjct: 81  TLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRGQ-GKKNIYLANNKITMLRDL 138

Query: 198 TIG--ESLARYIVLSSNNFTG-CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNL 254
             G    + +Y+ L  N                L+ + L  N +   +  ++    +  L
Sbjct: 139 DEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV---FAKL 193

Query: 255 TVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
              D+ SNK    +   F +   +  + + +N L   +   +    +L +F    N
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.7 bits (238), Expect = 5e-21
 Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 31/223 (13%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           +  +       + L   +     +   ++E D+S N L        L     L  L+L  
Sbjct: 14  IEKVTD-----SSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSS 67

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFR------------------GSIPETIGESLARYI 207
           N    E       + L  + LN+N+ +                    +  + G+   + I
Sbjct: 68  NVLY-ETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGK-KNI 125

Query: 208 VLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS 267
            L++N  T       G    +Q + L  N++   +     +     L   +++ N  +  
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 268 VPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           V         +  LD+S N L  F+  +      +   +  NN
Sbjct: 184 VKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.8 bits (220), Expect = 9e-19
 Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 19/192 (9%)

Query: 124 IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ--TG 180
           I E   N +R +   V+++ L             N+  LDL  N    ++        T 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 181 LDIIFLNHNWFRGSIPETIG-ESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
           L+++ L+ N       +     +L R + L++N         +     ++ +    N +S
Sbjct: 60  LELLNLSSNVLY-ETLDLESLSTL-RTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGF-VSADICK 298
             +    G           + +NK            + +  LD+  N +     +     
Sbjct: 113 R-VSCSRGQ----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 299 LPHLLNFTFSNN 310
              L +     N
Sbjct: 168 SDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 21/223 (9%)

Query: 90  DLNKAEIAAHLPPEMGW----LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLV 145
           +L    I   +  ++ +     LDL       N+L  +    F +   +    + NN+LV
Sbjct: 175 NLQYNFIY-DVKGQVVFAKLKTLDLSS-----NKLAFM-GPEFQSAAGVTWISLRNNKLV 227

Query: 146 GPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLA 204
                 AL + +NL + DLR N F      + F     +  +     +  +     E   
Sbjct: 228 L-IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECT 284

Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQ---LSGCLPSEIGSGEYK--NLTVFDI 259
              +     +  C      +   L  +   E+      G     +             D 
Sbjct: 285 VPTLGHYGAYC-CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 260 RSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302
              ++   + Q        + L+     L   VS        L
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 18/118 (15%), Positives = 47/118 (39%), Gaps = 10/118 (8%)

Query: 194 SIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYK 252
           +I E     +  +   ++ ++    L         ++E+ L  N LS    +++    + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP--FT 58

Query: 253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
            L + ++ SN  +        +L+ +  LD+++N +      ++   P +     +NN
Sbjct: 59  KLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN 109

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (275), Expect = 2e-26
 Identities = 38/242 (15%), Positives = 74/242 (30%), Gaps = 31/242 (12%)

Query: 90  DLNKAEIAAHLPPEMGWLL-DLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF 148
            +  + +       +     ++     + N L  I     A   +LE  ++S+N L    
Sbjct: 16  KVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74

Query: 149 PTVALTWKRNLY-----------------LDLRFNNFEGELPPELFQTGLDIIFLNHNWF 191
              +L+  R L                  L    NN    +     Q G   I+L +N  
Sbjct: 75  DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRGQ-GKKNIYLANNKI 132

Query: 192 RGSIPETIGE--SLARYIVLSSNNFTG-CLPRSIGYMKELQEIILMENQLSGCLPSEIGS 248
                   G    + +Y+ L  N                L+ + L  N +   +  ++  
Sbjct: 133 TMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVVF 190

Query: 249 GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFS 308
                L   D+ SNK    +   F +   +  + + +N L   +   +    +L +F   
Sbjct: 191 ---AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 309 NN 310
            N
Sbjct: 246 GN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 19/192 (9%)

Query: 124 IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ--TG 180
           I E   N +R +   V+++ L             N+  LDL  N    ++        T 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 181 LDIIFLNHNWFRGSIPETIG-ESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
           L+++ L+ N       +     +L R + L++N         +     ++ +    N +S
Sbjct: 60  LELLNLSSNVLY-ETLDLESLSTL-RTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGF-VSADICK 298
             +    G    +      + +NK            + +  LD+  N +     +     
Sbjct: 113 R-VSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 299 LPHLLNFTFSNN 310
              L +     N
Sbjct: 168 SDTLEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 12/119 (10%)

Query: 194 SIPETIG--ESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEY 251
           +I E         +   ++ ++    L         ++E+ L  N LS    +++    +
Sbjct: 1   AIHEIKQNGNRY-KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP--F 57

Query: 252 KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
             L + ++ SN  +        +L+ +  LD+++N +      ++   P +     +NN
Sbjct: 58  TKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN 109

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 90  DLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFP 149
           +L    I   +  ++     L     ++N+L   +   F +   +    + NN+LV    
Sbjct: 175 NLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IE 230

Query: 150 TVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIV 208
             AL + +NL + DLR N F      + F     +  +     +  +     E      +
Sbjct: 231 K-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTL 288

Query: 209 LSSNNFTGCLPRSIGYMKELQEIILMENQLS 239
                +  C      +   L  I L  +   
Sbjct: 289 GHYGAYC-CEDLPAPFADRL--IALGHHHHH 316

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (278), Expect = 1e-25
 Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 14/209 (6%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
              L +   + N    I+   F  +  L+  D  ++ L       A      L YLD+ +
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRS 221
            N +      +F   T L+ + +  N F+ +    +  +     ++ LS           
Sbjct: 434 TNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281
              +  LQ + +  N L   L S   +    +L+  D   N+   S         ++   
Sbjct: 493 FDTLHRLQLLNMSHNNLLF-LDSSHYNQL-YSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 282 DISDNMLTGFVSADICKLPHLLNFTFSNN 310
           ++++N +       IC+    L +     
Sbjct: 551 NLTNNSVAC-----ICEHQKFLQWVKEQK 574

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (263), Expect = 8e-24
 Identities = 42/213 (19%), Positives = 67/213 (31%), Gaps = 16/213 (7%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL--VGPFPTVALTWKRNLYLDLRF 165
           L L       N+    I      +  L   D+S N L   G      L      +LDL F
Sbjct: 333 LTLTM-----NKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRS 221
           N     +    F     L  +   H+  +     +   SL    Y+ +S  N        
Sbjct: 386 NGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281
              +  L  + +  N       S + +    NLT  D+   +        F  L+ +  L
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 282 DISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
           ++S N L    S+   +L  L     S N  + 
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.0 bits (242), Expect = 3e-21
 Identities = 28/232 (12%), Positives = 70/232 (30%), Gaps = 20/232 (8%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
              P     L  L    A   +L  +       +  L++ +V++N +         +   
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 158 NL-YLDLRFNNFEGELPPELFQ------TGLDIIFLNHNWFRGSIPETIGESLA-RYIVL 209
           NL ++DL +N  +  +     Q           + ++ N     I +   + +    + L
Sbjct: 154 NLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTL 211

Query: 210 SSNNFTGCLPRSIGY-MKELQEIILMENQLSGCLPSEIGS----GEYKNLTV--FDIRSN 262
             N  +  + ++    +  L    L+  +       EI          ++T+  F +   
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 263 KFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
                    F  L N+  + ++   +       + K     + +      + 
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 33/211 (15%), Positives = 60/211 (28%), Gaps = 11/211 (5%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNN 167
           + +  F              F  +  +    ++   +            +   L +    
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ--SLSIIRCQ 318

Query: 168 FEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFT--GCLPRSIGYM 225
            + + P       L  + L  N    S  +    SL  Y+ LS N  +  GC   S    
Sbjct: 319 LK-QFPTLDL-PFLKSLTLTMNKGSISFKKVALPSL-SYLDLSRNALSFSGCCSYSDLGT 375

Query: 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS-FANLNNIMRLDIS 284
             L+ + L  N     + +       + L   D + +        S F +L  ++ LDIS
Sbjct: 376 NSLRHLDLSFNGAII-MSANFMG--LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315
                         L  L     + N F+  
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 18/217 (8%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           +DL +     N L  +   +F+N   L+  D+S   +       A     +L  L L  N
Sbjct: 37  IDLSF-----NPLKILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGN 90

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGC-LPRS 221
             +    P  F   T L+ +              IG+  +L + + ++ N    C LP  
Sbjct: 91  PIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL-KKLNVAHNFIHSCKLPAY 148

Query: 222 IGYMKELQEIILMENQLSGCLPSEIG--SGEYKNLTVFDIRSNKFHGSVPQSFANLNNIM 279
              +  L  + L  N +     +++       +     D+  N       Q+F  +  + 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLH 207

Query: 280 RLDISDNMLTGFVSADICK-LPHLLNFTFSNNFFQGM 315
            L +  N  +  +     + L  L         F+  
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 28/213 (13%), Positives = 61/213 (28%), Gaps = 27/213 (12%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           LDL     +   +  I  + +  +H L    ++ N +   F   + +   +L  L     
Sbjct: 61  LDL-----SRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVET 114

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRG-SIPETIG--ESLARYIVLSSNNFTGCLPRS 221
                L          L  + + HN+     +P       +L  ++ LS N         
Sbjct: 115 KLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL-VHVDLSYNYIQTITVND 172

Query: 222 IGYMKEL----QEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ-SFANLN 276
           + +++E       + +  N +   +  +   G    L    +R N    ++ +    NL 
Sbjct: 173 LQFLRENPQVNLSLDMSLNPID-FIQDQAFQG--IKLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 277 NIMRLDISDNMLTGFVSADICKLPHLLNFTFSN 309
            +    +               L          
Sbjct: 230 GLHVHRLILGEFKDER-----NLEIFEPSIMEG 257

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 160 YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSSNNFT 215
            +DL FN  +  L    F   + L  + L+         +       L   ++L+ N   
Sbjct: 36  NIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL-SNLILTGNPIQ 93

Query: 216 GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG-SVPQSFAN 274
              P S   +  L+ ++ +E +L+      IG      L   ++  N  H   +P  F+N
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQL--ITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 275 LNNIMRLDISDNMLTGFVSADICKLPHLLNFTF----SNNFFQGMAMECISG 322
           L N++ +D+S N +      D+  L            S N    +  +   G
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.1 bits (211), Expect = 2e-17
 Identities = 27/217 (12%), Positives = 59/217 (27%), Gaps = 35/217 (16%)

Query: 118 NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPEL 176
           N +    P +F+ +  LE       +L     +  +     L  L++  N       P  
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 177 FQ--TGLDIIFLNHNWFRGSIPETIG-----ESLARYIVLSSNNFTGCLPRSIGYMKELQ 229
           F   T L  + L++N+ +      +        +   + +S N     +        +L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLH 207

Query: 230 EIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNI----------- 278
           E+ L  N  S  +           L V  +   +F         +  N+           
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNL-AGLHVHRLILGEFK--------DERNLEIFEPSIMEGL 258

Query: 279 -----MRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
                    ++              L ++   + +  
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.0 bits (190), Expect = 6e-15
 Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 4/146 (2%)

Query: 170 GELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQ 229
           G L P +                  +P+ I  S  + I LS N        S     ELQ
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS-KVPDDIPSST-KNIDLSFNPLKILKSYSFSNFSELQ 59

Query: 230 EIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLT 289
            + L   ++              +L+   +  N      P SF+ L ++  L   +  L 
Sbjct: 60  WLDLSRCEIETIEDKAWHG--LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 290 GFVSADICKLPHLLNFTFSNNFFQGM 315
              S  I +L  L     ++NF    
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSC 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 193 GSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYK 252
           GS+   I               +  +P  I      + I L  N L   L S   S  + 
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKI-LKSYSFSN-FS 56

Query: 253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFF 312
            L   D+   +      +++  L+++  L ++ N +  F       L  L N        
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 313 QGMAMECISG 322
             +    I  
Sbjct: 117 ASLESFPIGQ 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (262), Expect = 1e-24
 Identities = 36/216 (16%), Positives = 82/216 (37%), Gaps = 24/216 (11%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL 159
               +  +  L Y     +++  + P   AN+  L    ++ N++    P  +LT   +L
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLT---SL 201

Query: 160 -YLDLRFNNFEGELPP--ELFQTGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNF 214
            Y     N     + P   +  T L+ + + +N      P  +     L  ++ + +N  
Sbjct: 202 HYFTAYVNQITD-ITPVANM--TRLNSLKIGNNKITDLSP--LANLSQL-TWLEIGTNQI 255

Query: 215 TGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN 274
           +     ++  + +L+ + +  NQ+S    S + +     L    + +N+      +    
Sbjct: 256 SD--INAVKDLTKLKMLNVGSNQISD--ISVLNN--LSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 275 LNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           L N+  L +S N +T      +  L  + +  F+N 
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 92.6 bits (231), Expect = 1e-20
 Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 25/226 (11%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF 148
           ++LN  +I   + P +  L+ L   +  TN++  I      N+  L E  ++ + +    
Sbjct: 71  LNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDIS 126

Query: 149 PTVALTWKRNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLA 204
           P   LT    +  L+L  N+        L   TGL+ + +  +  +   P  I     L 
Sbjct: 127 PLANLT---KMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDL- 179

Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264
             + L+ N     +   +  +  L       NQ++    + + +     L    I +NK 
Sbjct: 180 YSLSLNYNQIED-IS-PLASLTSLHYFTAYVNQITD--ITPVAN--MTRLNSLKIGNNKI 233

Query: 265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
             +     ANL+ +  L+I  N ++   +  +  L  L      +N
Sbjct: 234 --TDLSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.1 bits (214), Expect = 2e-18
 Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 22/193 (11%)

Query: 102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-Y 160
             +  L DL     N N++  I P   A++  L  F    N++    P   +T    L  
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMT---RLNS 225

Query: 161 LDLRFNNFEGELPP--ELFQTGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTG 216
           L +  N     L P   L  + L  + +  N    S    + +   L + + + SN  + 
Sbjct: 226 LKIGNNKITD-LSPLANL--SQLTWLEIGTNQI--SDINAVKDLTKL-KMLNVGSNQISD 279

Query: 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLN 276
                +  + +L  + L  NQL       IG     NLT   +  N      P   A+L+
Sbjct: 280 --ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG--LTNLTTLFLSQNHITDIRP--LASLS 333

Query: 277 NIMRLDISDNMLT 289
            +   D ++ ++ 
Sbjct: 334 KMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.6 bits (205), Expect = 3e-17
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 21/207 (10%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L + I        +  ++      +  + +  V+  ++        LT   NL YL+L  
Sbjct: 21  LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQGIEYLT---NLEYLNLNG 75

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIG 223
           N     + P      L  +++  N    +    +    +L R + L+ +N +   P  + 
Sbjct: 76  NQITD-ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNL-RELYLNEDNISDISP--LA 129

Query: 224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDI 283
            + ++  + L  N       S + +     L    +  +K     P   ANL ++  L +
Sbjct: 130 NLTKMYSLNLGANHNLS-DLSPLSN--MTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184

Query: 284 SDNMLTGFVSADICKLPHLLNFTFSNN 310
           + N +   +S  +  L  L  FT   N
Sbjct: 185 NYNQIED-ISP-LASLTSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.6 bits (205), Expect = 3e-17
 Identities = 26/188 (13%), Positives = 64/188 (34%), Gaps = 19/188 (10%)

Query: 126 ETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDII 184
              A++       +    +        L    ++  L +        +    + T L+ +
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEELE---SITKLVVAGEKVA-SIQGIEYLTNLEYL 71

Query: 185 FLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL 242
            LN N      P  +     L   + + +N  T     ++  +  L+E+ L E+ +S   
Sbjct: 72  NLNGNQITDISP--LSNLVKL-TNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD-- 124

Query: 243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302
            S +       +   ++ +N    S     +N+  +  L ++++ +       I  L  L
Sbjct: 125 ISPLA--NLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDL 179

Query: 303 LNFTFSNN 310
            + + + N
Sbjct: 180 YSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.6 bits (174), Expect = 2e-13
 Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 12/150 (8%)

Query: 161 LDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPR 220
           L         ++ P+          L        + +   ES+   +V++       +  
Sbjct: 5   LATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVVTQEELESI-TKLVVAGEKVAS-IQ- 60

Query: 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMR 280
            I Y+  L+ + L  NQ++    S + +     LT   I +NK   +   +  NL N+  
Sbjct: 61  GIEYLTNLEYLNLNGNQITD--ISPLSN--LVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 281 LDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           L ++++ ++    + +  L  + +     N
Sbjct: 115 LYLNEDNISDI--SPLANLTKMYSLNLGAN 142

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (250), Expect = 4e-23
 Identities = 37/206 (17%), Positives = 63/206 (30%), Gaps = 26/206 (12%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN-----------RLVGPF 148
           LP  M     L       N L   +P + A+++RL E  +                    
Sbjct: 119 LPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 149 PTVALTWKRNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLA 204
               L    NL  L L +      LP  +     L  + + ++    ++   I     L 
Sbjct: 178 EHQGLV---NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL- 231

Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILME-NQLSGCLPSEIGSGEYKNLTVFDIRSNK 263
             + L         P   G    L+ +IL + + L   LP +I       L   D+R   
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHR--LTQLEKLDLRGCV 288

Query: 264 FHGSVPQSFANLNNIMRLDISDNMLT 289
               +P   A L     + +  ++  
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.7 bits (218), Expect = 5e-19
 Identities = 35/196 (17%), Positives = 67/196 (34%), Gaps = 24/196 (12%)

Query: 129 ANMHRLEEFDVSNNRLVG-PFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ-TGLDIIF 185
           A        ++ +  L   P     L+   +L ++ +       ELP  + Q  GL+ + 
Sbjct: 78  ATQPGRVALELRSVPLPQFPDQAFRLS---HLQHMTIDAAGLM-ELPDTMQQFAGLETLT 133

Query: 186 LNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMEN----QLS 239
           L  N  R ++P +I     L R + + +      LP  +       E   + N    +L 
Sbjct: 134 LARNPLR-ALPASIASLNRL-RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 240 GC----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD-NMLTGFVSA 294
                 LP+ I     +NL    IR++    ++  +  +L  +  LD+     L  +   
Sbjct: 192 WTGIRSLPASIA--NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNY-PP 247

Query: 295 DICKLPHLLNFTFSNN 310
                  L      + 
Sbjct: 248 IFGGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 40/210 (19%)

Query: 134 LEEFDVSNNRLVGPFPTVALTWKR-------------------NLYLDLRFNNFEGELPP 174
            E      +  + P+  V   W+R                   N  ++ R          
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD 73

Query: 175 ELFQ---TGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSSNNFTGCLPRSIGYMKELQ 229
            L      G   + L         P+       L +++ + +      LP ++     L+
Sbjct: 74  LLEDATQPGRVALELRSVPLP-QFPDQAFRLSHL-QHMTIDAAGLM-ELPDTMQQFAGLE 130

Query: 230 EIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN---------LNNIMR 280
            + L  N L   LP+ I S     L    IR+      +P+  A+         L N+  
Sbjct: 131 TLTLARNPLR-ALPASIAS--LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 281 LDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           L +    +   + A I  L +L +    N+
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 8e-14
 Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 23/179 (12%)

Query: 99  HLPPEMGWLLDLIYFH-ANTNRLCGIIPETFAN---------MHRLEEFDVSNNRLVG-P 147
            LP  +  L  L          L   +PE  A+         +  L+   +    +   P
Sbjct: 141 ALPASIASLNRLRELSIRACPEL-TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199

Query: 148 FPTVALTWKRNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SL 203
                L    NL  L +R +     L P +     L+ + L       + P   G    L
Sbjct: 200 ASIANLQ---NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 204 ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSN 262
            + ++L   +    LP  I  + +L+++ L        LPS I         +  +  +
Sbjct: 256 -KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ--LPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 15/158 (9%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTV--ALTWKR 157
              E   L++L         +  + P + AN+  L+   + N+ L          L    
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSA-LGPAIHHLP--- 229

Query: 158 NL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSSNN 213
            L  LDLR        PP       L  + L       ++P  I     L   + L    
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL-EKLDLRGCV 288

Query: 214 FTGCLPRSIGYMKELQEIILMEN---QLSGCLPSEIGS 248
               LP  I  +     I++  +   QL    P    +
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPA 326

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.3 bits (240), Expect = 1e-21
 Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 19/228 (8%)

Query: 88  MIDLNKAEIAAHLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG 146
           ++ L + +++  LP  +      L     + N L  I  +TF     L+   +S+NRL  
Sbjct: 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT- 178

Query: 147 PFPTVALTWKRNLY-LDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLAR 205
               V L+   +L+  ++ +N     L   +    ++ +  +HN     +   +   L  
Sbjct: 179 ---HVDLSLIPSLFHANVSYNLLS-TLAIPIA---VEELDASHNSIN-VVRGPVNVEL-T 229

Query: 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
            + L  NN T      +     L E+ L  N+L   +         + L    I +N+  
Sbjct: 230 ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVK-MQRLERLYISNNRLV 285

Query: 266 GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
            ++      +  +  LD+S N L   V  +  +   L N    +N   
Sbjct: 286 -ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.9 bits (226), Expect = 7e-20
 Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 32/234 (13%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            LP  +      +   + N  ++  I    FA  H +++  +  N +    P        
Sbjct: 59  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVP 117

Query: 158 NL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSN 212
            L  L L  N+    LP  +F     L  + +++N     I +   ++    + + LSSN
Sbjct: 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 175

Query: 213 NFT----GCLPR------------SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV 256
             T      +P             ++     ++E+    N +     + +       LT+
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI-----NVVRGPVNVELTI 230

Query: 257 FDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
             ++ N           N   ++ +D+S N L   +     K+  L     SNN
Sbjct: 231 LKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 23/228 (10%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF 148
           + ++      +   E   L +        + +  +      +  ++E  ++++ ++    
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-I 84

Query: 149 PTVALTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA- 204
            T A  +   +  L + FN     LPP +FQ    L ++ L  N    S+P  I  +   
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 142

Query: 205 -RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK 263
              + +S+NN       +      LQ + L  N+L     + +      +L   ++  N 
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-----THVDLSLIPSLFHANVSYNL 197

Query: 264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADIC-KLPHLLNFTFSNN 310
                  + A    +  LD S N +   V   +  +L  L      +N
Sbjct: 198 L-----STLAIPIAVEELDASHNSIN-VVRGPVNVELTIL---KLQHN 236

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.4 bits (178), Expect = 9e-14
 Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 23/194 (11%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRN 158
           H+      +  L + + + N L      T A    +EE D S+N +              
Sbjct: 179 HVDL--SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV-VRGPVNV---E 227

Query: 159 L-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFT 215
           L  L L+ NN   +    L   GL  + L++N     I       +     + +S+N   
Sbjct: 228 LTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV 285

Query: 216 GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL 275
             L      +  L+ + L  N L   +           L    +  N    ++    +  
Sbjct: 286 A-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQF--DRLENLYLDHNSIV-TLK--LSTH 338

Query: 276 NNIMRLDISDNMLT 289
           + +  L +S N   
Sbjct: 339 HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 19/149 (12%), Positives = 48/149 (32%), Gaps = 4/149 (2%)

Query: 162 DLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRS 221
              +   +  L  +     + I     + + G   E I  +  + +   ++         
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFG--FEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281
           +   ++++ + L + Q+   + +   +     +    +  N      P  F N+  +  L
Sbjct: 65  LDSFRQVELLNLNDLQIEE-IDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 282 DISDNMLTGFVSADICKLPHLLNFTFSNN 310
            +  N L+          P L   + SNN
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNN 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 8/105 (7%), Positives = 29/105 (27%), Gaps = 2/105 (1%)

Query: 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
           Y V        C+  ++ Y     ++ +  +  +  +          N  +   +++   
Sbjct: 1   YNVKPRQPEYKCIDSNLQYDCVFYDVHI--DMQTQDVYFGFEDITLNNQKIVTFKNSTMR 58

Query: 266 GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
                   +   +  L+++D  +    +        +       N
Sbjct: 59  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.1 bits (239), Expect = 5e-21
 Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 19/228 (8%)

Query: 88  MIDLNKAEIAAHLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG 146
           ++ L + +++  LP  +      L     + N L  I  +TF     L+   +S+NRL  
Sbjct: 127 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT- 184

Query: 147 PFPTVALTWKRNLY-LDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLAR 205
               V L+   +L+  ++ +N     L   +    ++ +  +HN     +   +   L  
Sbjct: 185 ---HVDLSLIPSLFHANVSYNLLS-TLAIPIA---VEELDASHNSIN-VVRGPVNVEL-T 235

Query: 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
            + L  NN T      +     L E+ L  N+L   +         + L    I +N+  
Sbjct: 236 ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVK-MQRLERLYISNNRLV 291

Query: 266 GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
            ++      +  +  LD+S N L   V  +  +   L N    +N   
Sbjct: 292 -ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.0 bits (223), Expect = 5e-19
 Identities = 40/232 (17%), Positives = 76/232 (32%), Gaps = 28/232 (12%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            LP  +      +   + N  ++  I    FA  H +++  +  N +    P        
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVP 123

Query: 158 NL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSN 212
            L  L L  N+    LP  +F     L  + +++N     I +   ++    + + LSSN
Sbjct: 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 181

Query: 213 NFTGCLPRSIGYMKELQEIILMENQ--------------LSGCLPSEIGSGEYKNLTVFD 258
             T  +   +  +  L    +  N                S    + +       LT+  
Sbjct: 182 RLT-HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 238

Query: 259 IRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           ++ N           N   ++ +D+S N L   +     K+  L     SNN
Sbjct: 239 LQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.7 bits (217), Expect = 2e-18
 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 21/198 (10%)

Query: 118 NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPEL 176
           + +  +      +  ++E  ++++ ++     T A  +   +  L + FN     LPP +
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 118

Query: 177 FQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRSIGYMKELQEII 232
           FQ    L ++ L  N    S+P  I  +      + +S+NN       +      LQ + 
Sbjct: 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 233 LMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV 292
           L  N+L     + +      +L   ++  N        + A    +  LD S N +    
Sbjct: 178 LSSNRL-----THVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVR 227

Query: 293 SADICKLPHLLNFTFSNN 310
                +L  L      +N
Sbjct: 228 GPVNVELTIL---KLQHN 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 3e-13
 Identities = 31/212 (14%), Positives = 61/212 (28%), Gaps = 41/212 (19%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            +  +       L     ++NRL  +      ++      +VS N L      +A+    
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA---NVSYNLLSTLAIPIAVEE-- 215

Query: 158 NLYLDLRFNNFEGELPPELFQTGLDIIFLNHN------WFRG---------------SIP 196
              LD   N+    +   +    L I+ L HN      W                   I 
Sbjct: 216 ---LDASHNSIN-VVRGPVNV-ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM 270

Query: 197 ETIGESLA--RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNL 254
                 +     + +S+N     L      +  L+ + L  N L   +        +  L
Sbjct: 271 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ--FDRL 326

Query: 255 TVFDIRSNKFHGSVPQSFANLNNIMRLDISDN 286
               +  N    ++    +  + +  L +S N
Sbjct: 327 ENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 11/104 (10%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
           I + + +           +   + +    + +   LP+ +    ++ + + ++   +   
Sbjct: 34  IDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRK-LPAALLDS-FRQVELLNLNDLQIEE 89

Query: 267 SVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
               +FA  + I +L +  N +          +P L       N
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 23/190 (12%), Positives = 59/190 (31%), Gaps = 44/190 (23%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNN 167
           L +       NRL   +      +  L+  D+S+N L+                      
Sbjct: 283 LYISN-----NRL-VALNLYGQPIPTLKVLDLSHNHLL---------------------- 314

Query: 168 FEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMK 226
               +     Q   L+ ++L+HN    ++  +   +L + + LS N++  C        +
Sbjct: 315 ---HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTL-KNLTLSHNDWD-CNSLR-ALFR 367

Query: 227 ELQEIILMENQLSGCLPSEIGSG--------EYKNLTVFDIRSNKFHGSVPQSFANLNNI 278
            +    + +      +  ++  G         Y +  +  I        V ++    +  
Sbjct: 368 NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSAT 427

Query: 279 MRLDISDNML 288
             ++   ++ 
Sbjct: 428 DTINSVQSLS 437

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 10/107 (9%), Positives = 33/107 (30%), Gaps = 4/107 (3%)

Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264
           RY V        C+  ++ Y     ++ +  +  +  +          N  +   +++  
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHI--DMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 265 HGSVPQS-FANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
              +P +   +   +  L+++D  +    +        +       N
Sbjct: 64  R-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.5 bits (235), Expect = 3e-20
 Identities = 45/243 (18%), Positives = 85/243 (34%), Gaps = 18/243 (7%)

Query: 89  IDLNKAEIAAHLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP 147
           ++L   +I   +  E    L +L   + + N L  +    F  + ++   D+  N +   
Sbjct: 295 LNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI- 352

Query: 148 FPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARY 206
                  +   L  LDLR N     +    F   +  IFL+ N    ++P+      A  
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALT-TIH---FIPSIPDIFLSGNKLV-TLPK--INLTANL 405

Query: 207 IVLSSNNFTGCLPRSI-GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
           I LS N             +  LQ +IL +N+ S C   +  S    +L    +  N   
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN-PSLEQLFLGENMLQ 464

Query: 266 GSVPQS-----FANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECI 320
            +         F  L+++  L ++ N L          L  L   + ++N    ++   +
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524

Query: 321 SGS 323
             +
Sbjct: 525 PAN 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.7 bits (233), Expect = 4e-20
 Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 28/242 (11%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRL--CGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTW 155
            L P+    L  L         L    +    F N+  L   D+S N++   +   +   
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146

Query: 156 KRNL-YLDLRFNNFEGELPPELFQ----TGLDIIFLNHNWFRGSIPETIGESLA------ 204
             +L  +D   N     +     +      L    L  N     +    G+ +       
Sbjct: 147 LNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 205 -RYIVLSSNNFT------------GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEY 251
              + +S N +T                 S+     +       + +     +       
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 252 KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF 311
            ++   D+          + F  L ++  L+++ N +          L +L     S N 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 312 FQ 313
             
Sbjct: 326 LG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.0 bits (226), Expect = 4e-19
 Identities = 44/244 (18%), Positives = 81/244 (33%), Gaps = 33/244 (13%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMH------RLEEFDVSNNRL-----------VGPFP 149
              L +F    N L   +   +           LE  DVS N             +    
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 150 TVALTWKRNL-YLDLRFNNFEGELPPELFQ----TGLDIIFLNHNWFRGSIPETIGESLA 204
             +L    ++      F+N + +     F     + +  + L+H +   S+   + E+L 
Sbjct: 233 AFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLK 290

Query: 205 --RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSN 262
             + + L+ N        +   +  LQ + L  N L   L S    G    +   D++ N
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYG-LPKVAYIDLQKN 348

Query: 263 KFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG 322
                  Q+F  L  +  LD+ DN LT      I  +P + +   S N    +    ++ 
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTA 403

Query: 323 SRDD 326
           +   
Sbjct: 404 NLIH 407

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 89.1 bits (221), Expect = 1e-18
 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 25/227 (11%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNN 167
           +DL       N +  I  +TF  + +L+  D+ +N L       ++       + L  N 
Sbjct: 343 IDLQK-----NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP-----DIFLSGNK 392

Query: 168 FEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRSI-GY 224
               LP        ++I L+ N             +   + ++L+ N F+ C        
Sbjct: 393 LV-TLPKINLT--ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 225 MKELQEIILMENQLSGCLPSEIGSGEYK---NLTVFDIRSNKFHGSVPQSFANLNNIMRL 281
              L+++ L EN L     +E+    ++   +L V  +  N  +   P  F++L  +  L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 282 DISDNMLTGFVSADICKLPHLLN------FTFSNNFFQGMAMECISG 322
            ++ N LT     D+     +L+         + + F  +++  I+ 
Sbjct: 510 SLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 31/231 (13%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           L L +     N +  +   +F  + +L+  ++ +          A     NL  LDL  +
Sbjct: 29  LLLSF-----NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFR-GSIPETIGESLA--RYIVLSSNNFTG-CLPR 220
                L P+ FQ    L  + L         + +    +L     + LS N      L  
Sbjct: 84  KIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMR 280
           S G +  L+ I    NQ+      E+   + K L+ F + +N  +  V   +    N  R
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 281 ------LDISDNMLTGFVSADICK------------LPHLLNFTFSNNFFQ 313
                 LD+S N  T  ++ +                 H++   F  +  +
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.8 bits (215), Expect = 8e-18
 Identities = 37/241 (15%), Positives = 70/241 (29%), Gaps = 30/241 (12%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMH--RLEEFDVSNNRLVGPFPTVALTWK 156
           +L P  G L  L     ++N++  +       +    L  F ++ N L            
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 157 RNL------YLDLRFNNFEGELPPELFQTGLDII--------------FLNHNWFRGSIP 196
                     LD+  N +        F   +                     +  +    
Sbjct: 199 NPFRNMVLEILDVSGNGWT-VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPD 256

Query: 197 ETIGESLA----RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYK 252
           +     LA    R++ LS         R    +K+L+ + L  N+++  +  E   G   
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGL-D 314

Query: 253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFF 312
           NL V ++  N        +F  L  +  +D+  N +          L  L      +N  
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 313 Q 313
            
Sbjct: 375 T 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 37/237 (15%), Positives = 70/237 (29%), Gaps = 22/237 (9%)

Query: 89  IDLNKAEIAAHLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL-VG 146
           ++L        +  E    L +L      ++++  + P+ F  +  L E  +    L   
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 147 PFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESL 203
                     + L  LDL  N          F     L  I  + N     + E   E L
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPL 171

Query: 204 A----RYIVLSSNNFTGCLPRSIGY-MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFD 258
                 +  L++N+    +    G  M   + ++L    +SG   +           +  
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD---------ITG 222

Query: 259 IRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH--LLNFTFSNNFFQ 313
             SN    S   S    ++IM      + +          L    + +   S+ F  
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 83.7 bits (207), Expect = 6e-17
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 18/200 (9%)

Query: 128 FANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDII 184
              ++  E   +S N +       +  +   L  L+L        +  E F+    L I+
Sbjct: 20  PQVLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 185 FLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCL--PRSIGYMKELQEIILMENQLSG 240
            L  +     +     + L     + L     +  +        +K L  + L +NQ+  
Sbjct: 79  DLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR- 136

Query: 241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL--NNIMRLDISDNMLTGFVSADICK 298
            L      G+  +L   D  SN+           L    +    ++ N L   VS D  K
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 299 LPHLLNFT------FSNNFF 312
             +            S N +
Sbjct: 197 CMNPFRNMVLEILDVSGNGW 216

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 6e-15
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 8/161 (4%)

Query: 160 YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFT 215
            L L FN     +    F     L ++ L   +   +I +    +L   R + L S+   
Sbjct: 28  RLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86

Query: 216 GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG-SVPQSFAN 274
              P +   +  L E+ L    LS  +  +      K LT  D+  N+     +  SF  
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146

Query: 275 LNNIMRLDISDNMLTGFVSADICKL--PHLLNFTFSNNFFQ 313
           LN++  +D S N +      ++  L    L  F+ + N   
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 5/124 (4%)

Query: 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN 253
            +P+ +  +    ++LS N        S  ++++LQ + L        +  E       N
Sbjct: 18  QVPQVL--NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-LPN 74

Query: 254 LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSAD--ICKLPHLLNFTFSNNF 311
           L + D+ S+K +   P +F  L ++  L +    L+  V  D     L  L     S N 
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 312 FQGM 315
            + +
Sbjct: 135 IRSL 138

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 16/111 (14%), Positives = 39/111 (35%), Gaps = 7/111 (6%)

Query: 209 LSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268
               N T  +P+ +      + ++L  N +   + +       + L + ++ S     ++
Sbjct: 11  YRFCNLTQ-VPQVL---NTTERLLLSFNYIRT-VTASSFPF-LEQLQLLELGSQYTPLTI 64

Query: 269 -PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAME 318
             ++F NL N+  LD+  + +          L HL              ++
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.6 bits (228), Expect = 9e-20
 Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 17/210 (8%)

Query: 102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-Y 160
             +G L +L     N N+L  I   T A++  L + D++NN++    P   LT    L  
Sbjct: 215 TPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLT---KLTE 269

Query: 161 LDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPR 220
           L L  N     + P    T L  + LN N      P +  ++L  Y+ L  NN +   P 
Sbjct: 270 LKLGANQISN-ISPLAGLTALTNLELNENQLEDISPISNLKNL-TYLTLYFNNISDISP- 326

Query: 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMR 280
            +  + +LQ +    N++S    S + +    N+       N+     P   ANL  I +
Sbjct: 327 -VSSLTKLQRLFFYNNKVSD--VSSLAN--LTNINWLSAGHNQISDLTP--LANLTRITQ 379

Query: 281 LDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           L ++D   T     +      + N   +  
Sbjct: 380 LGLNDQAWTNA-PVNYKANVSIPNTVKNVT 408

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.6 bits (228), Expect = 1e-19
 Identities = 47/214 (21%), Positives = 80/214 (37%), Gaps = 24/214 (11%)

Query: 101 PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL- 159
              +  L  L     ++N++  I     A +  LE    +NN++    P   LT   NL 
Sbjct: 170 LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILT---NLD 224

Query: 160 YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTG 216
            L L  N  +      L   T L  + L +N      P  +     L   + L +N  + 
Sbjct: 225 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL-TELKLGANQISN 279

Query: 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLN 276
            +   +  +  L  + L ENQL     S I +   KNLT   +  N      P   ++L 
Sbjct: 280 -IS-PLAGLTALTNLELNENQLED--ISPISN--LKNLTYLTLYFNNISDISP--VSSLT 331

Query: 277 NIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
            + RL   +N ++   S  +  L ++   +  +N
Sbjct: 332 KLQRLFFYNNKVSDVSS--LANLTNINWLSAGHN 363

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 91.2 bits (227), Expect = 1e-19
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 25/225 (11%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF 148
           +  ++  I +     + +L +L   + + N+L  I P    N+ +L +  ++NN++    
Sbjct: 51  LQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106

Query: 149 PTVALTWKRNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARY 206
           P   LT   NL  L L  N         L   T L+ + L+ N         +   L   
Sbjct: 107 PLANLT---NLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALS-GLTSL 158

Query: 207 IVLS-SNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
             LS  N  T   P  +  +  L+ + +  N++S    S +      NL      +N+  
Sbjct: 159 QQLSFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAK--LTNLESLIATNNQIS 212

Query: 266 GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
              P     L N+  L ++ N L    +  +  L +L +   +NN
Sbjct: 213 DITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.6 bits (197), Expect = 7e-16
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 17/215 (7%)

Query: 102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-Y 160
             +  L  L       N++  I P   A +  L   +++ N+L    P   L    NL Y
Sbjct: 259 APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLK---NLTY 313

Query: 161 LDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPR 220
           L L FNN    + P    T L  +F  +N            ++  ++    N  +   P 
Sbjct: 314 LTLYFNNISD-ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI-NWLSAGHNQISDLTP- 370

Query: 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV-PQSFANLNNIM 279
            +  +  + ++ L +   +   P         N+++ +   N     + P + ++  +  
Sbjct: 371 -LANLTRITQLGLNDQAWTN-APVNYK----ANVSIPNTVKNVTGALIAPATISDGGSYT 424

Query: 280 RLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
             DI+ N+ + + +         +        F G
Sbjct: 425 EPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSG 458

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 37/227 (16%), Positives = 70/227 (30%), Gaps = 41/227 (18%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L + +        +   +     ++ ++         +        L    NL  ++   
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLN---NLTQINFSN 77

Query: 166 NNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSI 222
           N     + P L   T L  I +N+N      P  +    +L   + L +N  T  +   +
Sbjct: 78  NQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNL-TGLTLFNNQITD-ID-PL 130

Query: 223 GYMKELQEIILMENQLSGCLPSEIGS-------------------GEYKNLTVFDIRSNK 263
             +  L  + L  N +S    S +                          L   DI SNK
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188

Query: 264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
              S     A L N+  L  ++N ++      +  L +L   + + N
Sbjct: 189 V--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 23/189 (12%)

Query: 126 ETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ-TGLDI 183
            T   +    +  +    +        L     +  L       +      +     L  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADRLGIKS--IDGVEYLNNLTQ 72

Query: 184 IFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC 241
           I  ++N      P  +     L   I++++N         +  +  L  + L  NQ++  
Sbjct: 73  INFSNNQLTDITP--LKNLTKL-VDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD- 126

Query: 242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH 301
               + +    NL   ++ SN    S   + + L ++ +L   + +        +  L  
Sbjct: 127 -IDPLKN--LTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTD---LKPLANLTT 178

Query: 302 LLNFTFSNN 310
           L     S+N
Sbjct: 179 LERLDISSN 187

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 33/167 (19%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L  L       N++  +     AN+  +      +N++    P   LT    +  L L  
Sbjct: 330 LTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLANLT---RITQLGLND 384

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYM 225
             +                         + P     +++    + +       P +I   
Sbjct: 385 QAWT------------------------NAPVNYKANVSIPNTVKNVTGALIAPATISDG 420

Query: 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSF 272
               E  +  N  S    +E+ S  +         +  F G+V Q  
Sbjct: 421 GSYTEPDITWNLPSY--TNEV-SYTFSQPVTIGKGTTTFSGTVTQPL 464

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 91.4 bits (226), Expect = 3e-19
 Identities = 26/173 (15%), Positives = 43/173 (24%), Gaps = 2/173 (1%)

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPP 503
            K+   P  Q     +  P+  P      PP  P  +  S       PQ + P +     
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQ--FMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 504 VRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP 563
           +             +   +      + P V     ++   P           Q    P+ 
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 564 PPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPP 616
                       P +   P    +  PP  +     PPP V  P   +     
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSEL 174

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 90.7 bits (224), Expect = 5e-19
 Identities = 28/170 (16%), Positives = 41/170 (24%), Gaps = 11/170 (6%)

Query: 458 SSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPS 517
           S      YP             +     PAQ  P   P            PP   +PS  
Sbjct: 2   SHHKKRVYPQA----QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMG 57

Query: 518 SPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPP 577
               +          +       +            P+  P     P    P  + +P  
Sbjct: 58  QQQFLTPAQEQLHQQIDQATTSMNDMHL-----HNVPLVDPNAYMQPQ--VPVQMGTPLQ 110

Query: 578 SSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
               P  +P+   P  +      P     P   +   PPP+     P PP
Sbjct: 111 QQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPP 160

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 89.1 bits (220), Expect = 2e-18
 Identities = 31/187 (16%), Positives = 44/187 (23%), Gaps = 4/187 (2%)

Query: 435 SSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPS 494
           S       P  Q      Q+  P   P    PP   +A   S        PP  + P   
Sbjct: 2   SHHKKRVYPQAQLQYG--QNATPLQQPAQFMPPQDPAAAGMSY--GQMGMPPQGAVPSMG 57

Query: 495 PPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPP 554
                 P   +         +  +   +++ P   P     P        P      P  
Sbjct: 58  QQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117

Query: 555 VQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSP 614
             +   PS        P+    P        P        PPP   PP     P  + + 
Sbjct: 118 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNA 177

Query: 615 PPPVQSP 621
            P     
Sbjct: 178 SPDYIRS 184

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 88.3 bits (218), Expect = 3e-18
 Identities = 23/151 (15%), Positives = 34/151 (22%), Gaps = 6/151 (3%)

Query: 478 MPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPP 537
           M         Q+  Q          P +  PP  P  +  S   +  PP  + P +    
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 538 PVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPP 597
                 P    L       +           P      P +   P        P+Q    
Sbjct: 61  F---LTPAQEQLHQQIDQATTSMNDMHLHNVPLV---DPNAYMQPQVPVQMGTPLQQQQQ 114

Query: 598 TSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
               P  G P   +     P+    P     
Sbjct: 115 PMAAPAYGQPSAAMGQNMRPMNQLYPIDLLT 145

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 86.8 bits (214), Expect = 8e-18
 Identities = 33/183 (18%), Positives = 43/183 (23%), Gaps = 2/183 (1%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
             K   P       +   P    +       P +          P     PS       T
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 491 PQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLS 550
           P              S         P   P  Y   P  P  +  P   +  P   P+  
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAY-MQPQVPVQMGTPLQQQQQPMAAPAYG 122

Query: 551 PPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPP 610
            P          P   LYP  + +  P   T    P PP  I       P     + P  
Sbjct: 123 QPSAAM-GQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDY 181

Query: 611 IQS 613
           I+S
Sbjct: 182 IRS 184

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 85.3 bits (210), Expect = 2e-17
 Identities = 24/177 (13%), Positives = 40/177 (22%), Gaps = 3/177 (1%)

Query: 453 QSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST-PQPSPPPVSYPPPVRSPPPPS 511
           +   P +               P+    P  P  A  +  Q   PP    P +      +
Sbjct: 6   KRVYPQAQLQYGQNAT--PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 512 PMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPP 571
           P           +    +   +   P V  +    P +             P        
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123

Query: 572 VRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
             +    +  P     P   +   PP      +  PP  I      V S    + P 
Sbjct: 124 PSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPD 180

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 80.3 bits (197), Expect = 8e-16
 Identities = 24/147 (16%), Positives = 35/147 (23%), Gaps = 8/147 (5%)

Query: 483 SPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSS 542
           S    +  PQ          P+    P   MP         S      PP    P +   
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPL--QQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQ 59

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
              TP+       Q     +         +         P+    P  P+Q   P     
Sbjct: 60  QFLTPA--QEQLHQQIDQATTS----MNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113

Query: 603 PVGSPPPPIQSPPPPVQSPPPPSPPPP 629
              + P   Q      Q+  P +   P
Sbjct: 114 QPMAAPAYGQPSAAMGQNMRPMNQLYP 140

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 79.1 bits (194), Expect = 2e-15
 Identities = 14/132 (10%), Positives = 24/132 (18%)

Query: 498 VSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQS 557
           +S+      P         ++P    +   P   P +          P     P    Q 
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 558 PPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPP 617
              P+   +       +   +       P   P     P                   P 
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120

Query: 618 VQSPPPPSPPPP 629
              P        
Sbjct: 121 YGQPSAAMGQNM 132

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 78.7 bits (193), Expect = 2e-15
 Identities = 33/175 (18%), Positives = 47/175 (26%), Gaps = 6/175 (3%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
                   P    P Q+P     S      PP    P +      +P          Q+T
Sbjct: 18  QNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQAT 77

Query: 491 PQPSPPPVSYPPPVRSPPPPSPMPSPS----SPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
              +   +   P     P     P       +P      P  +P        +  +  P 
Sbjct: 78  TSMNDMHLHNVPL--VDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPM 135

Query: 547 PSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
             L P   +   PPP     L PPP+  PP     PS   +  P        + P
Sbjct: 136 NQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVP 190

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 76.4 bits (187), Expect = 2e-14
 Identities = 42/238 (17%), Positives = 58/238 (24%), Gaps = 19/238 (7%)

Query: 373 PSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPP 432
           P A       +TP Q+P    P     +          PP                   P
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQ---------------GAVP 54

Query: 433 KPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQ 492
                   T   +Q    + Q+    +   +   P V       P        P Q   Q
Sbjct: 55  SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQ 114

Query: 493 PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPP 552
           P   P    P         PM        +   PPP       PPP+    PP   L P 
Sbjct: 115 PMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPL--VIPPERMLVPS 172

Query: 553 PPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPP 610
               + P      +   P  ++      +  P      P Q       PPP+      
Sbjct: 173 ELSNASPDYIRSTLNAVP--KNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI 228

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 69.5 bits (169), Expect = 2e-12
 Identities = 31/223 (13%), Positives = 46/223 (20%), Gaps = 7/223 (3%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
                 + P  +P+   P Q+P     +     +P                  +   P  
Sbjct: 14  LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ-------QQFLTPAQ 66

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
                +    T +         PLV       P                        P A
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
                  P    YP  + +  PP        PPP+  PP     P             T 
Sbjct: 127 AMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTL 186

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPP 590
           +  P           P  ++  P         P P        
Sbjct: 187 NAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIV 229

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 9/209 (4%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL-VGPFPTVALTWKRNL-YLDLR 164
           L  L      +N+       +  ++  LE  D+S N L      + +     +L YLDL 
Sbjct: 324 LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 165 FNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRS 221
           FN     +         L+ +   H+  +     ++  SL    Y+ +S  +        
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281
              +  L+ + +  N        +I   E +NLT  D+   +     P +F +L+++  L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 282 DISDNMLTGFVSADICKLPHLLNFTFSNN 310
           +++ N L         +L  L       N
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 33/212 (15%), Positives = 72/212 (33%), Gaps = 12/212 (5%)

Query: 106 WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRF 165
            L ++  F   +  +  +   ++      +  ++ N +    FPT+ L   + L      
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFT--- 333

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRG-SIPETIGESLA--RYIVLSSNNFTGCLPRSI 222
           +N  G    E+    L+ + L+ N                  +Y+ LS N     +  + 
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392

Query: 223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD 282
             +++L+ +    + L   +         +NL   DI       +    F  L+++  L 
Sbjct: 393 LGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 283 ISDNMLTGFVSADI-CKLPHLLNFTFSNNFFQ 313
           ++ N        DI  +L +L     S    +
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 14/213 (6%)

Query: 108 LDLIYFHANTNRL-CGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL-DLRF 165
           L +  F           I + F  +  +  F + +  +            ++L L + +F
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFT--GCLPRSIG 223
             F     P L    L  +    N    +  E    SL  ++ LS N  +  GC  +S  
Sbjct: 317 GQF-----PTLKLKSLKRLTFTSNKGGNAFSEVDLPSL-EFLDLSRNGLSFKGCCSQSDF 370

Query: 224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS-FANLNNIMRLD 282
               L+ + L  N +   + S       + L   D + +        S F +L N++ LD
Sbjct: 371 GTTSLKYLDLSFNGVIT-MSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 283 ISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315
           IS        +     L  L     + N FQ  
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 29/213 (13%), Positives = 66/213 (30%), Gaps = 20/213 (9%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
             +L     +   +  I    + ++  L    ++ N +       A +   +L  L    
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVE 109

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFR-GSIPETIG--ESLARYIVLSSNNFTGCLPR 220
            N    L          L  + + HN  +   +PE      +L  ++ LSSN        
Sbjct: 110 TNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCT 167

Query: 221 SIGYMKELQ----EIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLN 276
            +  + ++      + L  N ++  +           L    +R+N    +V ++   + 
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE--IRLHKLTLRNNFDSLNVMKTC--IQ 222

Query: 277 NIMRLDISDNMLTGFVSADICKLPHLLNFTFSN 309
            +  L++   +L  F   +   L          
Sbjct: 223 GLAGLEVHRLVLGEF--RNEGNLEKFDKSALEG 253

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 13/187 (6%)

Query: 89  IDL--NKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG 146
           +DL  N                 L Y   + N +   +   F  + +LE  D  ++ L  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 147 PFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESL 203
                     RNL YLD+   +        +F   + L+++ +  N F+ +    I   L
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 204 A--RYIVLSSNNFTGCLPRSI-GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR 260
               ++ LS       L  +    +  LQ + +  NQL   +P  I      +L    + 
Sbjct: 470 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRL-TSLQKIWLH 526

Query: 261 SNKFHGS 267
           +N +  S
Sbjct: 527 TNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 22/218 (10%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           LDL +     N L  +   +F +   L+  D+S   +       A     +L  L L  N
Sbjct: 33  LDLSF-----NPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGC-LPRS 221
             +  L    F   + L  +              IG   +L + + ++ N      LP  
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEY 144

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVF----DIRSNKFHGSVPQSFANLNN 277
              +  L+ + L  N++   +           + +     D+  N  +   P +F  +  
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 278 IMRLDISDNMLTGFVSADIC-KLPHLLNFTFSNNFFQG 314
           + +L + +N  +  V       L  L         F+ 
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 21/231 (9%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
            L       L  L    A    L  +      ++  L+E +V++N +         +   
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 158 NL-YLDLRFNNFEGELPPELFQ--TGLDIIF----LNHNWFRGSIPETIGESLA-RYIVL 209
           NL +LDL  N  +  +     +    + ++     L+ N     I     + +    + L
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 210 SSNNFTGCLPR-SIGYMKELQEIILMENQLSGC-----LPSEIGSG-EYKNLTVFDIRSN 262
            +N  +  + +  I  +  L+   L+  +                G     +  F +   
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 263 K-FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFF 312
             +   +   F  L N+    +    +      D        +    N  F
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKF 316

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN 253
            IP+ +  S  + + LS N        S     ELQ + L   ++   +          +
Sbjct: 21  KIPDNLPFST-KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQS-LSH 77

Query: 254 LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
           L+   +  N        +F+ L+++ +L   +  L    +  I  L  L     ++N  Q
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 5/114 (4%)

Query: 209 LSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268
               NF   +P ++      + + L  N L   L S      +  L V D+   +     
Sbjct: 14  CMELNFYK-IPDNL--PFSTKNLDLSFNPLRH-LGSYSFFS-FPELQVLDLSRCEIQTIE 68

Query: 269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG 322
             ++ +L+++  L ++ N +          L  L            +    I  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.9 bits (215), Expect = 6e-18
 Identities = 41/208 (19%), Positives = 81/208 (38%), Gaps = 32/208 (15%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL--VGPFPTVALTWKR 157
           LP     L +L       N+L   +P   + + +L      NN+L  +   P+  L    
Sbjct: 136 LPVLPPGLQELSVSD---NQL-ASLPALPSELCKL---WAYNNQLTSLPMLPS-GLQE-- 185

Query: 158 NLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGC 217
              L +  N     LP    +  L  ++  +N    S+P      L + +++S N  T  
Sbjct: 186 ---LSVSDNQLA-SLPTLPSE--LYKLWAYNNRLT-SLPALPS-GL-KELIVSGNRLT-S 235

Query: 218 LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN 277
           LP       EL+E+++  N+L+  LP          L    +  N+    +P+S  +L++
Sbjct: 236 LPVLPS---ELKELMVSGNRLT-SLPMLPS-----GLLSLSVYRNQLT-RLPESLIHLSS 285

Query: 278 IMRLDISDNMLTGFVSADICKLPHLLNF 305
              +++  N L+      + ++     +
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGY 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 47/215 (21%), Positives = 71/215 (33%), Gaps = 35/215 (16%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRN 158
            LP       +L     + N+L   +P     +  L  F      L    P+  L     
Sbjct: 75  SLPALPP---ELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLP-ALPS-GLC---- 124

Query: 159 LYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCL 218
             L +  N     LP      GL  + ++ N    S+P      L   +   +N  T  L
Sbjct: 125 -KLWIFGNQLT-SLPVLP--PGLQELSVSDNQLA-SLPALPS-EL-CKLWAYNNQLT-SL 176

Query: 219 PRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNI 278
           P        LQE+ + +NQL+  LP+         L      +N+   S+P   + L   
Sbjct: 177 PMLPS---GLQELSVSDNQLA-SLPTLPS-----ELYKLWAYNNRLT-SLPALPSGLK-- 224

Query: 279 MRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
             L +S N LT        +L  L     S N   
Sbjct: 225 -ELIVSGNRLTSL-PVLPSELKEL---MVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 36/157 (22%), Positives = 50/157 (31%), Gaps = 24/157 (15%)

Query: 155 WKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNN 213
                  L++  +     LP  L    +  + +  N    S+P      L R + +S N 
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPAH-ITTLVIPDNNLT-SLPALPP-EL-RTLEVSGNQ 92

Query: 214 FTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA 273
            T  LP     + EL         L   LPS         L    I  N+   S+P    
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPA-LPS--------GLCKLWIFGNQLT-SLPVLPP 141

Query: 274 NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
            L     L +SDN L     A   +L  L      NN
Sbjct: 142 GLQE---LSVSDNQLASL-PALPSELCKL---WAYNN 171

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.0 bits (210), Expect = 2e-17
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 24/216 (11%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRN 158
            LP  +     +       N L   +PE  A+   LE  D  +NRL    P +  + K  
Sbjct: 73  SLPDNLP--PQITVLEITQNAL-ISLPELPAS---LEYLDACDNRLST-LPELPASLKH- 124

Query: 159 LYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCL 218
             LD+  N     LP       L+ I  ++N     +PE    SL   + + +N  T  L
Sbjct: 125 --LDVDNNQLT-MLPELP--ALLEYINADNNQLT-MLPELPT-SL-EVLSVRNNQLT-FL 175

Query: 219 PRSIGYMKELQEIILMENQLSGCLPSEIGSGEY--KNLTVFDIRSNKFHGSVPQSFANLN 276
           P        L+ + +  N L   LP+      +  +    F  R N+    +P++  +L+
Sbjct: 176 PELPE---SLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLD 230

Query: 277 NIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFF 312
               + + DN L+  +   + +     ++     +F
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.8 bits (199), Expect = 4e-16
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 32/221 (14%)

Query: 95  EIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALT 154
              A                 N N    ++ E    +++  E  ++   L    P     
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLSS-LPDNLPP 80

Query: 155 WKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNN 213
               +  L++  N     LP       L+ +    N    ++PE    SL +++ + +N 
Sbjct: 81  ---QITVLEITQNALI-SLPELP--ASLEYLDACDNRLS-TLPELPA-SL-KHLDVDNNQ 131

Query: 214 FTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA 273
            T  LP        L+ I    NQL+  LP         +L V  +R+N+    +P+   
Sbjct: 132 LT-MLPELPA---LLEYINADNNQLT-MLPELPT-----SLEVLSVRNNQL-TFLPELPE 180

Query: 274 NLNNIMRLDISDNMLTGFVSADICKLPHLLN----FTFSNN 310
           +L     LD+S N+L   + A   +  H       F    N
Sbjct: 181 SLE---ALDVSTNLLES-LPAVPVRNHHSEETEIFFRCREN 217

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 28/221 (12%), Positives = 71/221 (32%), Gaps = 9/221 (4%)

Query: 99  HLPPEM-GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157
           ++         +L      ++R+  I  + F ++  LE  D+S+N L     +       
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLS 98

Query: 158 NL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSN 212
           +L YL+L  N ++      LF   T L  + + +      I       L     + + + 
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 213 NFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSF 272
           +      +S+  ++++  + L  ++ +  L          ++   ++R            
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADI-LSSVRYLELRDTNLARFQFSPL 216

Query: 273 ANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
                   +       +        +L  LL +    +  +
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 18/223 (8%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           LDL +     N++  I          L+   + ++R+       A     +L +LDL  N
Sbjct: 31  LDLSF-----NKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDN 84

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPR-S 221
           +    L    F   + L  + L  N ++     ++  +L   + + + +      + R  
Sbjct: 85  HLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281
              +  L E+ +    L       + S   +++    +  ++    +      L+++  L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKS--IRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 282 DISDNMLTGFVSADICKLP---HLLNFTFSNNFFQGMAMECIS 321
           ++ D  L  F  + +        +    F  +     +   + 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 7e-16
 Identities = 38/236 (16%), Positives = 80/236 (33%), Gaps = 27/236 (11%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL--VG 146
           + + +  +   L      L  +       +++  +      ++  LE  D+S N +    
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 147 PFPTVALTWKRNL-YLDLRFNNFEG-ELPPELFQ--TGLDIIFLNHNWFRGSIPETIG-- 200
              +       +L  L L  N+    +   E+      L  + ++ N F   +P++    
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409

Query: 201 ESLARYIVLSSNNFT---GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVF 257
           E + R++ LSS        C+P++      L+ + +  N L       +       L   
Sbjct: 410 EKM-RFLNLSSTGIRVVKTCIPQT------LEVLDVSNNNLDS-FSLFL-----PRLQEL 456

Query: 258 DIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
            I  NK   ++P   +    ++ + IS N L         +L  L       N + 
Sbjct: 457 YISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 30/228 (13%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           L +     N      I    FA +  L E ++    L   + + +L   R++ +L L  +
Sbjct: 128 LRI----GNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLS 182

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTG-------- 216
                L        + +  + L           +          +    F G        
Sbjct: 183 ESA-FLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 217 -CLPRSIGYMKELQEIILMENQLSG---------CLPSEIGSGEYKNLTVFDIRSNKFHG 266
             L + + Y+ EL E+   +  L+G          + SE+G  E   +    I       
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 267 SVPQSFANLNNIMRLDISDNMLTGFVSADICK-LPHLLNFTFSNNFFQ 313
            +   ++ L  + R+ + ++ +   V     + L  L     S N   
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 209 LSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268
             S +FT  +P  +     ++ + L  N+++     ++ +    NL V  ++S++ +   
Sbjct: 12  GRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRA--CANLQVLILKSSRINTIE 66

Query: 269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315
             +F +L ++  LD+SDN L+   S+    L  L       N +Q +
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 16/221 (7%)

Query: 95  EIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALT 154
            +   +P E   LLDL       NR+  +  + FA+   LEE +++ N +       A  
Sbjct: 25  AVPEGIPTETR-LLDL-----GKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFN 77

Query: 155 WKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVL 209
              NL  L LR N  +  +P  +F   + L  + ++ N     + + + + L   + + +
Sbjct: 78  NLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEV 135

Query: 210 SSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP 269
             N+      R+   +  L+++ L +  L+  +P+E  S     L V  +R    +    
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSH-LHGLIVLRLRHLNINAIRD 193

Query: 270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
            SF  L  +  L+IS       ++ +     +L + + ++ 
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 46/296 (15%), Positives = 87/296 (29%), Gaps = 46/296 (15%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN 166
           L  LI        +  I   +F  ++RL+  ++S+   +       L       L +   
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGY 224
           N    +P    +    L  + L++N                   +  +            
Sbjct: 235 NLT-AVPYLAVRHLVYLRFLNLSYNPIS---------------TIEGSMLHE-------- 270

Query: 225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS 284
           +  LQEI L+  QL+  +      G    L V ++  N+        F ++ N+  L + 
Sbjct: 271 LLRLQEIQLVGGQLA-VVEPYAFRG-LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSR---------DDVYFEEKGNC 335
            N L    + D C+L  +    +  NF +     C +             DV       C
Sbjct: 329 SNPL----ACD-CRLLWVFRRRWRLNFNRQQPT-CATPEFVQGKEFKDFPDVLLPNYFTC 382

Query: 336 LAEMEYQKLPTECYPVVSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKT 391
                  +   + +      V      C   G PP      +P+    +     + 
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQF---VCRADGDPPPAILWLSPRKHLVSAKSNGRL 435

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 8/130 (6%)

Query: 90  DLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFP 149
           +++       + P   + L+L         L  +      ++  L   ++S N +     
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IE 264

Query: 150 TVALTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA-- 204
              L     L  + L        + P  F+    L ++ ++ N    ++ E++  S+   
Sbjct: 265 GSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNL 322

Query: 205 RYIVLSSNNF 214
             ++L SN  
Sbjct: 323 ETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 10/140 (7%)

Query: 106 WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLR 164
            L  L     +       +         L    +++  L    P +A+     L +L+L 
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLS 256

Query: 165 FNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPR 220
           +N     +   +      L  I L        +       L   R + +S N  T  L  
Sbjct: 257 YNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEE 313

Query: 221 SI-GYMKELQEIILMENQLS 239
           S+   +  L+ +IL  N L+
Sbjct: 314 SVFHSVGNLETLILDSNPLA 333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.0 bits (198), Expect = 4e-16
 Identities = 40/244 (16%), Positives = 71/244 (29%), Gaps = 53/244 (21%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFAN-------------MHRLEEFDVSNNRLV 145
            +P E   +     ++   +      P                    +  E +++N  L 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 146 GPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESL 203
              P +      +L  L    N+   ELP        L +   N      ++ + +   L
Sbjct: 85  -SLPELP----PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK----ALSD-LPPLL 133

Query: 204 ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGS--------------- 248
             Y+ +S+N     LP  +     L+ I +  N L   LP    S               
Sbjct: 134 -EYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELP 189

Query: 249 --GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFT 306
                  LT     +N     +P    +L     +   +N+L      ++  LP L    
Sbjct: 190 ELQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNILEEL--PELQNLPFLTTIY 243

Query: 307 FSNN 310
             NN
Sbjct: 244 ADNN 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 7e-14
 Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 51/241 (21%)

Query: 101 PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKR--- 157
            PE+  L  L   +A+ N L   +P+   +   LE  +V +N L    P +  +      
Sbjct: 230 LPELQNLPFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLTD-LPELPQSLTFLDV 284

Query: 158 -------------NL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESL 203
                        NL YL+   N     L        L+ + +++N     +P      L
Sbjct: 285 SENIFSGLSELPPNLYYLNASSNEIR-SLCDLP--PSLEELNVSNNKLI-ELPALPP-RL 339

Query: 204 ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGS--------------G 249
              ++ S N+    +P        L+++ +  N L    P    S               
Sbjct: 340 -ERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPE 393

Query: 250 EYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSN 309
             +NL    + +N      P    ++ +   L ++   +             L +  F +
Sbjct: 394 LPQNLKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEH 449

Query: 310 N 310
           +
Sbjct: 450 H 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 46/215 (21%), Positives = 70/215 (32%), Gaps = 37/215 (17%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRN 158
            LP     L  +    A  N L   +PE   N+  L      NN L             +
Sbjct: 209 KLPDLPLSLESI---VAGNNIL-EELPE-LQNLPFLTTIYADNNLL-----KTLPDLPPS 258

Query: 159 L-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTG 216
           L  L++R N    +LP      T LD+     +     + E    +L  Y+  SSN    
Sbjct: 259 LEALNVRDNYLT-DLPELPQSLTFLDVSENIFS----GLSELPP-NL-YYLNASSNEIRS 311

Query: 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLN 276
            L         L+E+ +  N+L   LP+         L       N     VP+   NL 
Sbjct: 312 -LCDL---PPSLEELNVSNNKLI-ELPALPP-----RLERLIASFNHLA-EVPELPQNLK 360

Query: 277 NIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF 311
              +L +  N L  F       +  L     +++ 
Sbjct: 361 ---QLHVEYNPLREF-PDIPESVEDL---RMNSHL 388

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 50/213 (23%), Positives = 75/213 (35%), Gaps = 35/213 (16%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL 159
           LP        L +  A  N+L   +PE   N+  L      NN L             +L
Sbjct: 168 LPDLPP---SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPDLPL-----SL 217

Query: 160 -YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGC 217
             +    N    E  PEL     L  I+ ++N  + ++P+    SL   + +  N  T  
Sbjct: 218 ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP-SL-EALNVRDNYLTD- 271

Query: 218 LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN 277
           LP        L  + + EN  SG L          NL   +  SN+   S+     +L  
Sbjct: 272 LPELPQ---SLTFLDVSENIFSG-LSELPP-----NLYYLNASSNEIR-SLCDLPPSLE- 320

Query: 278 IMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
              L++S+N L     A   +L  L     S N
Sbjct: 321 --ELNVSNNKLIEL-PALPPRLERL---IASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 42/208 (20%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG-PFPTVALTWKR 157
            LP     L  L       + L  + P        L   + S+N +        +L    
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIRSLCDLPPSLE--- 320

Query: 158 NLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGC 217
              L++  N    ELP       L+ +  + N     +PE    +L + + +  N     
Sbjct: 321 --ELNVSNNKLI-ELPALP--PRLERLIASFNHLA-EVPELPQ-NL-KQLHVEYNPLR-E 371

Query: 218 LPRSIGYMKE----------------LQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRS 261
            P     +++                L+++ +  N L    P         ++    + S
Sbjct: 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE-----SVEDLRMNS 425

Query: 262 NKFHGSVPQSFANLNNIMRLDISDNMLT 289
            +       +    + +       +   
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 17/126 (13%)

Query: 196 PETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEY---- 251
           P  +  +  +  +  S+N T  +P     +K   E     ++     P   G        
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 252 -------KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLN 304
                  +     ++ +     S+P+   +L +   L  S N LT  +      L  LL 
Sbjct: 64  RLRDCLDRQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLV 118

Query: 305 FTFSNN 310
              +  
Sbjct: 119 DNNNLK 124

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 30/202 (14%), Positives = 62/202 (30%), Gaps = 24/202 (11%)

Query: 110 LIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNF 168
           L   + +TN +  +         +L   D S+N+L      + +T    L Y D   N  
Sbjct: 193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT----EIDVTPLTQLTYFDCSVNPL 245

Query: 169 EGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKEL 228
             EL      + L  +          I  T    L  Y           L   + +  +L
Sbjct: 246 T-ELDVSTL-SKLTTLHCIQTDLL-EIDLTHNTQL-IYFQAEGCRKIKELD--VTHNTQL 299

Query: 229 QEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNML 288
             +      ++     E+   +   L    + + +    +    ++   +  L   +  +
Sbjct: 300 YLLDCQAAGIT-----ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

Query: 289 TGFVSADICKLPHLLNFTFSNN 310
             F  + + K+P L N   +  
Sbjct: 352 QDF--SSVGKIPALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.7 bits (189), Expect = 6e-15
 Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 25/205 (12%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
             +L Y   ++N+L  +       + +L   +   N+L              L YL+   
Sbjct: 84  NTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKL-TKLDVSQNP---LLTYLNCAR 136

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYM 225
           N    E+      T L  +  + N     +  T    L   +  S N  T      +   
Sbjct: 137 NTLT-EIDVSHN-TQLTELDCHLNKKITKLDVTPQTQL-TTLDCSFNKITEL---DVSQN 190

Query: 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD 285
           K L  +    N ++     ++   +   LT  D  SNK    +      L  +   D S 
Sbjct: 191 KLLNRLNCDTNNIT-----KLDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSV 242

Query: 286 NMLTGFVSADICKLPHLLNFTFSNN 310
           N LT     D+  L  L        
Sbjct: 243 NPLT---ELDVSTLSKLTTLHCIQT 264

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.3 bits (188), Expect = 8e-15
 Identities = 37/210 (17%), Positives = 62/210 (29%), Gaps = 25/210 (11%)

Query: 102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-Y 160
             +  L  L      +N +  +     +    L      +N+L        LT    L Y
Sbjct: 58  TGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LDVTPLT---KLTY 110

Query: 161 LDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPR 220
           L+   N    +L        L  +    N     I  +    L   +    N     L  
Sbjct: 111 LNCDTNKLT-KLDVSQN-PLLTYLNCARNTLT-EIDVSHNTQL-TELDCHLNKKITKLD- 165

Query: 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMR 280
            +    +L  +    N+++     E+   + K L   +  +N     +         +  
Sbjct: 166 -VTPQTQLTTLDCSFNKIT-----ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF 216

Query: 281 LDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           LD S N LT     D+  L  L  F  S N
Sbjct: 217 LDCSSNKLT---EIDVTPLTQLTYFDCSVN 243

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 37/205 (18%), Positives = 56/205 (27%), Gaps = 24/205 (11%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
               +               +   +  L   D  N+ +        LT    L  L    
Sbjct: 20  FASEVAAAFEMQ---ATDTISEEQLATLTSLDCHNSSITDMTGIEKLT---GLTKLICTS 73

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYM 225
           NN    L      T L  +  + N    ++  T    L  Y+   +N  T  L   +   
Sbjct: 74  NNIT-TLDLSQN-TNLTYLACDSNKLT-NLDVTPLTKL-TYLNCDTNKLTK-LD--VSQN 126

Query: 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD 285
             L  +    N L     +EI       LT  D   NK    +         +  LD S 
Sbjct: 127 PLLTYLNCARNTL-----TEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSF 179

Query: 286 NMLTGFVSADICKLPHLLNFTFSNN 310
           N +T     D+ +   L       N
Sbjct: 180 NKITEL---DVSQNKLLNRLNCDTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 10/117 (8%)

Query: 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN 253
           S  +   +      V ++         S   +  L  +    + ++  +    G  +   
Sbjct: 10  SFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT---GIEKLTG 65

Query: 254 LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           LT     SN    ++    +   N+  L    N LT     D+  L  L       N
Sbjct: 66  LTKLICTSNNI-TTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTN 116

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 56/263 (21%), Positives = 98/263 (37%), Gaps = 20/263 (7%)

Query: 53  SDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIY 112
           +      E++      +  G +C        R V   DL   ++   LPP+   LLDL  
Sbjct: 3   ASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDT-ALLDL-- 59

Query: 113 FHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGE 171
                N++  I    F N+  L    + NN++       A      L  L L  N  + E
Sbjct: 60  ---QNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLK-E 114

Query: 172 LPPELFQTGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCL--PRSIGYMKE 227
           LP ++    L  + ++ N     + +++   L     + L +N          +   MK+
Sbjct: 115 LPEKMP-KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 228 LQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNM 287
           L  I + +  +     + I  G   +LT   +  NK       S   LNN+ +L +S N 
Sbjct: 173 LSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 288 LTGFVSADICKLPHLLNFTFSNN 310
           ++   +  +   PHL     +NN
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNN 250

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 17/210 (8%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L +L       N++  I P  FA + +LE   +S N+L    P       + L  L +  
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP---KTLQELRVHE 130

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFR-GSIPETIGESLA--RYIVLSSNNFTGCLPR 220
           N    ++   +F     + ++ L  N  +   I     + +    YI ++  N T  +P+
Sbjct: 131 NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ 188

Query: 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMR 280
             G    L E+ L  N+++  + +    G   NL    +  N        S AN  ++  
Sbjct: 189 --GLPPSLTELHLDGNKIT-KVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 281 LDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           L +++N L   V   +    ++      NN
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 20/193 (10%)

Query: 107 LLDLIYFHANTNRL--CGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDL 163
           L  +I     TN L   GI    F  M +L    +++  +    P        +L  L L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPP---SLTELHL 199

Query: 164 RFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLP 219
             N    ++     +    L  + L+ N    ++      +    R + L++N     +P
Sbjct: 200 DGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 220 RSIGYMKELQEIILMENQLS----GCLPSEIGSGEYKNLTVFDIRSNKFHGSV--PQSFA 273
             +   K +Q + L  N +S            + +  + +   + SN        P +F 
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 274 NLNNIMRLDISDN 286
            +     + + + 
Sbjct: 317 CVYVRAAVQLGNY 329

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 34/210 (16%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
              L Y   + N +   +   F  + +LE  D  ++ L            RNL YLD+  
Sbjct: 77  TTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRS 221
            +        +F   + L+++ +  N F+ +    I   L    ++ LS        P +
Sbjct: 136 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281
              +  LQ + +  N     L                             +  LN++  L
Sbjct: 195 FNSLSSLQVLNMSHNNFFS-LD-------------------------TFPYKCLNSLQVL 228

Query: 282 DISDNMLTGFVSADICKLPHLL-NFTFSNN 310
           D S N +      ++   P  L     + N
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 15/222 (6%)

Query: 95  EIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL-VGPFPTVAL 153
            +   +P      L+L      +N+L  +    F  + +L +  +S+N L      + + 
Sbjct: 21  SVPTGIPSSA-TRLEL-----ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74

Query: 154 TWKRNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLA--RYIVL 209
               +L YLDL FN     +         L+ +   H+  +     ++  SL    Y+ +
Sbjct: 75  FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 133

Query: 210 SSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP 269
           S  +           +  L+ + +  N        +I +   +NLT  D+   +    + 
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLE-QLS 191

Query: 270 Q-SFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
             +F +L+++  L++S N      +     L  L    +S N
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 51/259 (19%), Positives = 87/259 (33%), Gaps = 42/259 (16%)

Query: 82  QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSN 141
             R V   DL    +   + P+   LLDL       N +  +  + F  +  L    + N
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDT-TLLDL-----QNNDISELRKDDFKGLQHLYALVLVN 87

Query: 142 NRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHN--------WFR 192
           N++       A +  R L  L +  N+   E+PP L    L  + ++ N         F 
Sbjct: 88  NKISK-IHEKAFSPLRKLQKLYISKNHLV-EIPPNLPS-SLVELRIHDNRIRKVPKGVFS 144

Query: 193 G-----------------SIPETIGESLA-RYIVLSSNNFTGCLPRSIGYMKELQEIILM 234
           G                        + L   Y+ +S    TG +P+ +   + L E+ L 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLD 201

Query: 235 ENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSA 294
            N++   +  E     Y  L    +  N+       S + L  +  L + +N L+  V A
Sbjct: 202 HNKIQA-IELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258

Query: 295 DICKLPHLLNFTFSNNFFQ 313
            +  L  L       N   
Sbjct: 259 GLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 34/209 (16%), Positives = 69/209 (33%), Gaps = 31/209 (14%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL-VGPFPTVALTWKR 157
            +PP +     L+    + NR+  +    F+ +  +   ++  N L    F   A    +
Sbjct: 116 EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 158 NLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGC 217
             YL +        +P +L    L+ + L+HN  + +I                 +    
Sbjct: 174 LNYLRISEAKLT-GIPKDLP-ETLNELHLDHNKIQ-AIEL--------------EDLLR- 215

Query: 218 LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN 277
                    +L  + L  NQ+   + +   S     L    + +NK    VP    +L  
Sbjct: 216 -------YSKLYRLGLGHNQIR-MIENGSLSF-LPTLRELHLDNNKLS-RVPAGLPDLKL 265

Query: 278 IMRLDISDNMLTGFVSADICKLPHLLNFT 306
           +  + +  N +T     D C +   +   
Sbjct: 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 21/123 (17%)

Query: 118 NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPEL 176
           N++  I   + + +  L E  + NN+L    P   L   + L  + L  NN   ++    
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSR-VPA-GLPDLKLLQVVYLHTNNIT-KVGVND 283

Query: 177 FQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNN--FTGCLPRSIGYMKELQEIILM 234
           F      +   +                  I L +N   +    P +   + +   I   
Sbjct: 284 FCPVGFGVKRAYY---------------NGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

Query: 235 ENQ 237
             +
Sbjct: 329 NYK 331

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 73.2 bits (179), Expect = 7e-14
 Identities = 24/139 (17%), Positives = 33/139 (23%), Gaps = 1/139 (0%)

Query: 478 MPSPSSPPPAQSTPQPSPPPVS-YPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYP 536
           M               S    S    P       +P   PS  P + SP     P  +  
Sbjct: 1   MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS 60

Query: 537 PPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPP 596
            P+    PP   +S P    S   P+ P + +              S S    PP+    
Sbjct: 61  SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120

Query: 597 PTSPPPPVGSPPPPIQSPP 615
               P              
Sbjct: 121 VLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 71.7 bits (175), Expect = 2e-13
 Identities = 22/135 (16%), Positives = 32/135 (23%)

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
                     +       S   P+   S ++P    S  P    P     P+ +   P  
Sbjct: 5   HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPIN 64

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP 607
            + PP  V S P       +   P       SP  S   +P    +   P      V   
Sbjct: 65  GMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKV 124

Query: 608 PPPIQSPPPPVQSPP 622
           P              
Sbjct: 125 PAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 69.4 bits (169), Expect = 1e-12
 Identities = 21/137 (15%), Positives = 33/137 (24%), Gaps = 2/137 (1%)

Query: 453 QSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSP 512
                     +       S   P+   S ++P    S       P     P+ +   P  
Sbjct: 5   HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPIN 64

Query: 513 MPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPV 572
              P          P S    + P         +P LS P    S      PP+     +
Sbjct: 65  GMGPPFSVISSPMGPHSMSVPTTPTL--GFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122

Query: 573 RSPPPSSPTPSPSPSPP 589
           + P   S   +      
Sbjct: 123 KVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 68.6 bits (167), Expect = 2e-12
 Identities = 24/141 (17%), Positives = 36/141 (25%), Gaps = 5/141 (3%)

Query: 474 PPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPV 533
                        +         P            PS  P   SP  ++SP      P+
Sbjct: 4   HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPI 63

Query: 534 SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQ 593
           +        PP +   SP  P     P +P         +   P +P  S     PP   
Sbjct: 64  NG-----MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 594 SPPPTSPPPPVGSPPPPIQSP 614
           +     P  P G+     +  
Sbjct: 119 NGVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 65.9 bits (160), Expect = 2e-11
 Identities = 21/129 (16%), Positives = 29/129 (22%)

Query: 500 YPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPP 559
           +          S   + S   P       +P       P   SP    S           
Sbjct: 6   HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65

Query: 560 PPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQ 619
              P  V+  P          TP+   S   P  S P           PP   +    V 
Sbjct: 66  MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 125

Query: 620 SPPPPSPPP 628
           + P  +   
Sbjct: 126 AHPSGNMAS 134

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 62.8 bits (152), Expect = 1e-10
 Identities = 20/132 (15%), Positives = 29/132 (21%), Gaps = 1/132 (0%)

Query: 499 SYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSP 558
            +                +S     +       P  +P        P    SP   + SP
Sbjct: 3   HHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSP 62

Query: 559 -PPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPP 617
                PP  +   P+     S PT           Q   P +P        PP+      
Sbjct: 63  INGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122

Query: 618 VQSPPPPSPPPP 629
                P      
Sbjct: 123 KVPAHPSGNMAS 134

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 23/137 (16%), Positives = 32/137 (23%), Gaps = 5/137 (3%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
                    +T        P   +   S   P  +P        P  + SP S   +   
Sbjct: 8   HVDDDDKMFSTQVNSSLTSP---TGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPIN 64

Query: 491 PQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLS 550
               P  V   P    P   S   +P+      SP   SP            P     + 
Sbjct: 65  GMGPPFSVISSPM--GPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122

Query: 551 PPPPVQSPPPPSPPPVL 567
             P   S    S    +
Sbjct: 123 KVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 21/140 (15%), Positives = 37/140 (26%), Gaps = 4/140 (2%)

Query: 422 HKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSP 481
           H    +  +    S+   +++        +  +P            P +   P S + SP
Sbjct: 4   HHHHHVDDDDKMFSTQVNSSLTSPTGRGSM-AAPSLHPSLGPGIGSPGQLHSPISTLSSP 62

Query: 482 SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRS 541
            +      +   SP     P  +  P  P+   S  SP       P S      PP   +
Sbjct: 63  INGMGPPFSVISSPMG---PHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119

Query: 542 SPPPTPSLSPPPPVQSPPPP 561
                P+             
Sbjct: 120 GVLKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 14/135 (10%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
              S+ ++PT + S + P+  P +  P   +P     P+++ + P               
Sbjct: 19  QVNSSLTSPTGRGSMAAPSLHP-SLGPGIGSPGQLHSPISTLSSPING------------ 65

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
            + PP     +P        P          SP   S   PV S+    P    +     
Sbjct: 66  -MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKV 124

Query: 488 QSTPQPSPPPVSYPP 502
            + P  +    +   
Sbjct: 125 PAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 14/83 (16%), Positives = 18/83 (21%), Gaps = 3/83 (3%)

Query: 547 PSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
                          S         + SP       +PS  P        P     P+ +
Sbjct: 2   AHHHHHHVDDDDKMFSTQ---VNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPIST 58

Query: 607 PPPPIQSPPPPVQSPPPPSPPPP 629
              PI    PP      P  P  
Sbjct: 59  LSSPINGMGPPFSVISSPMGPHS 81

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.1 bits (177), Expect = 9e-14
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 15/216 (6%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L  L +   + N L  +    F  +  L   ++  N       T   +    L  L +  
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRS 221
            +   ++  + F   T L+ + ++ +  + S      +S+    +++L        L   
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGE------YKNLTVFDIRSNKFHGSVPQSFANL 275
           +     ++ + L +  L     SE+ +GE              I        V +    +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 276 NNIMRLDISDNMLTGFVSADICK-LPHLLNFTFSNN 310
           + ++ L+ S N L   V   I   L  L       N
Sbjct: 277 SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 25/221 (11%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL----VGPF-PTVALTWKRNLYL 161
            ++L      +N +  I  ++F+++  LE  D+S N L       F P  +LT     +L
Sbjct: 75  CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT-----FL 129

Query: 162 DLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGC 217
           +L  N ++      LF   T L I+ + +      I       L     + + +++    
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189

Query: 218 LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS--------VP 269
            P+S+  ++ +  +IL   Q    L          ++   ++R                 
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS-SVECLELRDTDLDTFHFSELSTGET 247

Query: 270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
            S         + I+D  L   +   + ++  LL   FS N
Sbjct: 248 NSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 26/219 (11%), Positives = 70/219 (31%), Gaps = 37/219 (16%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNN 167
           LDL     + NR+  I          L+   +++N +                       
Sbjct: 57  LDL-----SNNRITYISNSDLQRCVNLQALVLTSNGIN---------------------- 89

Query: 168 FEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRSI- 222
               +  + F     L+ + L++N+   ++  +  + L+   ++ L  N +      S+ 
Sbjct: 90  ---TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD 282
            ++ +LQ + +        +  +  +G    L   +I ++      P+S  ++ N+  L 
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 283 ISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECIS 321
           +        +   +     +      +          +S
Sbjct: 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 4/119 (3%)

Query: 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN 253
           SIP  + E++ + + LS+N  T      +     LQ ++L  N ++  +  +  S    +
Sbjct: 45  SIPSGLTEAV-KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSS-LGS 101

Query: 254 LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADI-CKLPHLLNFTFSNNF 311
           L   D+  N         F  L+++  L++  N         +   L  L      N  
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 18/193 (9%)

Query: 128 FANMHRLEEFDVSNNRLVGPFPT---VALTWKRNLYLDLRFNNFEGELPPELFQ---TGL 181
                 L+   V   R+           L       L L      G  PP L +     L
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 182 DIIFLNHN------WFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILME 235
           +I+ L +        +   + + +   L + + ++  +        +     L  + L +
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGL-KVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 236 NQLSG--CLPSEIGSGEYKNLTVFDIRSNKFH---GSVPQSFANLNNIMRLDISDNMLTG 290
           N   G   L S +   ++  L V  +R+       G      A    +  LD+S N L  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 291 FVSADICKLPHLL 303
              A  C  P  L
Sbjct: 243 AAGAPSCDWPSQL 255

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 3e-12
 Identities = 36/245 (14%), Positives = 63/245 (25%), Gaps = 26/245 (10%)

Query: 89  IDLNKAEIAAHLPPEMGWLLD---LIYFHANTNRLCGIIPETFANMH--RLEEFDVSNNR 143
           + +  A I + +      +L    L         + G  P          L   ++ N  
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 144 LVGPFPTVA----LTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPE 197
                  +A            L +   +       E  +    L  + L+ N   G    
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 198 TIGESLA-----RYIVLSSNNFT---GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSG 249
                       + + L +       G          +LQ + L  N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPSCD 250

Query: 250 EYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSN 309
               L   ++        VP+       +  LD+S N L    S    +LP + N +   
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKG 305

Query: 310 NFFQG 314
           N F  
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 22/157 (14%), Positives = 49/157 (31%), Gaps = 9/157 (5%)

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRS---I 222
              + EL          +  ++     G   + I     + + + +      +      +
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIM--- 279
             +  LQE+ L   +++G  P  +      +L + ++R+  +        A L   +   
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPG 150

Query: 280 --RLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314
              L I+      F    +   P L     S+N   G
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 72.1 bits (176), Expect = 2e-13
 Identities = 28/125 (22%), Positives = 34/125 (27%), Gaps = 2/125 (1%)

Query: 506 SPPPPSPMPSPSSPP-PVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPP 564
           S        S   P       P  S    +        PP T     PPP  +P   +PP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 565 PVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPP 624
             +    V       PT  P  +   P         P    S PP      P +   P P
Sbjct: 63  DTVTGDSVLQRILRGPT-GPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121

Query: 625 SPPPP 629
            P P 
Sbjct: 122 EPDPV 126

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 70.9 bits (173), Expect = 4e-13
 Identities = 29/137 (21%), Positives = 39/137 (28%), Gaps = 10/137 (7%)

Query: 489 STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPS 548
           S+           P       PS   + ++            PPV+ P P    PPP   
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAAS----DFLAALHPPVTVPDPAP--PPPPAP 56

Query: 549 LSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPP 608
            +  PP           +L  P    P  +S  P+      P      P S PP  G   
Sbjct: 57  AAGNPPDTVTGDSVLQRILRGPT--GPGTTSLAPAVRYGRQPG--PEAPASAPPAAGRAV 112

Query: 609 PPIQSPPPPVQSPPPPS 625
           P +   P P   P    
Sbjct: 113 PGLYHHPVPEPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 67.5 bits (164), Expect = 4e-12
 Identities = 27/131 (20%), Positives = 34/131 (25%), Gaps = 5/131 (3%)

Query: 457 PSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSP 516
                  S   P  S       PS S    A        PPV+ P P   PPP     +P
Sbjct: 5   HHHHHHSSGLVPRGSHMVI---PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 517 SSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPP 576
                  S         + P    +S  P       P  ++P    P      P +   P
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGT--TSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

Query: 577 PSSPTPSPSPS 587
              P P     
Sbjct: 120 VPEPDPVRVEE 130

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 65.2 bits (158), Expect = 3e-11
 Identities = 22/142 (15%), Positives = 30/142 (21%), Gaps = 11/142 (7%)

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPP 503
                        P     V   P        S   +   PP     P P+PPP   P  
Sbjct: 5   HHHHHHS--SGLVPRGSHMV--IPSASVTSAASDFLAALHPPVTV--PDPAPPPPPAPAA 58

Query: 504 VRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP 563
              P         S    +     P+ P  +   P           +P     +     P
Sbjct: 59  GNPPDTV---TGDSVLQRI--LRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVP 113

Query: 564 PPVLYPPPVRSPPPSSPTPSPS 585
               +P P   P          
Sbjct: 114 GLYHHPVPEPDPVRVEEVSRRI 135

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 64.4 bits (156), Expect = 4e-11
 Identities = 22/129 (17%), Positives = 33/129 (25%), Gaps = 2/129 (1%)

Query: 435 SSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPS 494
           SS           P       P +S    +        PP   +P P+ PPP       +
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPV-TVPDPAPPPPPAPAA-GN 60

Query: 495 PPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPP 554
           PP       V       P    ++           P P +      ++    P L   P 
Sbjct: 61  PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 555 VQSPPPPSP 563
            +  P    
Sbjct: 121 PEPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 63.6 bits (154), Expect = 7e-11
 Identities = 23/130 (17%), Positives = 32/130 (24%), Gaps = 3/130 (2%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
                S   P         P    +   S      +PP     P P P P+P++  P  +
Sbjct: 7   HHHHSSGLVPR--GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 490 TPQPSPPPVSYPPPVRSPPP-PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPS 548
               S        P        +P       P   +P    P      P +   P P P 
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPD 124

Query: 549 LSPPPPVQSP 558
                 V   
Sbjct: 125 PVRVEEVSRR 134

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 60.2 bits (145), Expect = 8e-10
 Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 30/155 (19%)

Query: 383 STPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTM 442
           S+      +    P    +  P  +                           S       
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVT----------------------SAASDFLAALH 40

Query: 443 PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAP--PPSPMPSPSSPPPAQSTPQPSPPPVSY 500
           PP   P P   +PPP   P    PP   +        +  P+ P      P         
Sbjct: 41  PPVTVPDP---APPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGR--- 94

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSY 535
            P   +P    P    + P   + P P   P    
Sbjct: 95  QPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 22/125 (17%), Positives = 31/125 (24%)

Query: 420 PRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP 479
             H      + P       P+          L    PP + P  + PPP   A    P  
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV 539
                   +    P+ P  +   P           +P+S PP      P       P P 
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPD 124

Query: 540 RSSPP 544
                
Sbjct: 125 PVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 23/146 (15%), Positives = 35/146 (23%), Gaps = 29/146 (19%)

Query: 367 GSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPP 426
           G  P       P  S ++ A +       P T   P+PP                     
Sbjct: 13  GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG------------- 59

Query: 427 IIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPP 486
                P  +    + +      P     P  +S  P         A      P P +P  
Sbjct: 60  ----NPPDTVTGDSVLQRILRGPT---GPGTTSLAP---------AVRYGRQPGPEAPAS 103

Query: 487 AQSTPQPSPPPVSYPPPVRSPPPPSP 512
           A      + P + + P     P    
Sbjct: 104 APPAAGRAVPGLYHHPVPEPDPVRVE 129

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 71.9 bits (175), Expect = 4e-13
 Identities = 15/199 (7%), Positives = 34/199 (17%), Gaps = 5/199 (2%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
           E   P +    T     E          +     +     R           ++   A  
Sbjct: 23  ETAVPENSGANTELVSGESEH-----STNEADKQNEGEHARENKLEKAEGVATASETASP 77

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
               +    +      + P        +  P   + P       + P          P+ 
Sbjct: 78  ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137

Query: 550 SPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPP 609
                 +   P  P         +    +S        P                     
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTG 197

Query: 610 PIQSPPPPVQSPPPPSPPP 628
            + +     ++        
Sbjct: 198 HLVNEKASKEAKVQALSNT 216

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 71.5 bits (174), Expect = 4e-13
 Identities = 18/217 (8%), Positives = 39/217 (17%), Gaps = 18/217 (8%)

Query: 374 SAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPK 433
              T  P  S    E  +      T                               E  +
Sbjct: 21  GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKL--------------EKAE 66

Query: 434 PSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQP 493
             +    T  P        ++   +S       P  +++   +  PS  + P +    + 
Sbjct: 67  GVATASETASPASNEAATTETAEAASAA----KPEEKASEVVAETPSAEAKPKSDKETEA 122

Query: 494 SPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPP 553
            P   +     +     +       P    +      P               P      
Sbjct: 123 KPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDD 182

Query: 554 PVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPP 590
            +                       +   + S +   
Sbjct: 183 AINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSK 219

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 68.5 bits (166), Expect = 4e-12
 Identities = 18/199 (9%), Positives = 31/199 (15%), Gaps = 5/199 (2%)

Query: 370 PSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIV 429
            S  +       +     E                        +   +            
Sbjct: 29  NSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETA 88

Query: 430 EPPKPSSPT-----PTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSP 484
           E    + P           P  E  P       + P   +     + A   +       P
Sbjct: 89  EAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQP 148

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP 544
              ++T +   P               P           S    S           S   
Sbjct: 149 DVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEA 208

Query: 545 PTPSLSPPPPVQSPPPPSP 563
              +LS             
Sbjct: 209 KVQALSNTNSKAKDHASVG 227

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 68.1 bits (165), Expect = 5e-12
 Identities = 13/197 (6%), Positives = 41/197 (20%), Gaps = 5/197 (2%)

Query: 438 TPTTMPPKQEPPPLVQSPPPSSPPPV-SYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPP 496
               +  + E   + ++   ++             A   +           ++    +  
Sbjct: 13  QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATAS 72

Query: 497 PVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPP----TPSLSPP 552
             + P    +    +   + ++ P   +    +  P +   P             +    
Sbjct: 73  ETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDE 132

Query: 553 PPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQ 612
               +    +   V    P  +     P      S    ++  P       +      + 
Sbjct: 133 SKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLA 192

Query: 613 SPPPPVQSPPPPSPPPP 629
           S           S    
Sbjct: 193 SRRTGHLVNEKASKEAK 209

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 66.9 bits (162), Expect = 1e-11
 Identities = 19/229 (8%), Positives = 37/229 (16%), Gaps = 19/229 (8%)

Query: 381 STSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPT 440
           +     +E   P  +     L S      T                   +          
Sbjct: 16  NLYFQGEETAVPENSGANTELVSGESEHSTNEA----------------DKQNEGEHARE 59

Query: 441 TMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSY 500
               K E           +    +      +A    P    S       + +  P     
Sbjct: 60  NKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKE 119

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPP---PVQS 557
                          P++             P +    ++       S        P   
Sbjct: 120 TEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAR 179

Query: 558 PPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
                    +     R+    +   S          +         VG 
Sbjct: 180 EDDAINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSKAKDHASVGG 228

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 63.8 bits (154), Expect = 1e-10
 Identities = 20/198 (10%), Positives = 36/198 (18%), Gaps = 6/198 (3%)

Query: 420 PRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP 479
              +      E     S   T    KQ      +         V+          P+   
Sbjct: 25  AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASE---TASPASNE 81

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV 539
           + ++          + P       V   P     P          P   +    S P   
Sbjct: 82  AATTETA--EAASAAKPEEKASEVVAETPSAEAKPKSDKETEA-KPEATNQGDESKPAAE 138

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTS 599
            +          P   +    P          +    P +            + S     
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGH 198

Query: 600 PPPPVGSPPPPIQSPPPP 617
                 S    +Q+    
Sbjct: 199 LVNEKASKEAKVQALSNT 216

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 63.1 bits (152), Expect = 2e-10
 Identities = 10/182 (5%), Positives = 30/182 (16%)

Query: 446 QEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVR 505
            +   L      ++ P  S       +       + +         + +    +      
Sbjct: 12  HQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATA 71

Query: 506 SPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPP 565
           S          ++     +     P   +      +        S       P   +   
Sbjct: 72  SETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGD 131

Query: 566 VLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPS 625
              P    +       P    +    ++                P       +       
Sbjct: 132 ESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVL 191

Query: 626 PP 627
             
Sbjct: 192 AS 193

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 40/199 (20%), Positives = 71/199 (35%), Gaps = 11/199 (5%)

Query: 118 NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPEL 176
           NR+  +   +F     L    + +N L       A T    L  LDL  N     + P  
Sbjct: 42  NRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100

Query: 177 FQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRSIGYMKELQEII 232
           F     L  + L+    +  +   +   LA  +Y+ L  N        +   +  L  + 
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159

Query: 233 LMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV 292
           L  N++S  +P     G   +L    +  N+     P +F +L  +M L +  N L+  +
Sbjct: 160 LHGNRISS-VPERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-AL 216

Query: 293 SADI-CKLPHLLNFTFSNN 310
             +    L  L     ++N
Sbjct: 217 PTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 37/186 (19%), Positives = 72/186 (38%), Gaps = 11/186 (5%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
             +L     ++N L  I    F  +  LE+ D+S+N  +             L  L L  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRS 221
              + EL P LF+    L  ++L  N  + ++P+     L    ++ L  N  +    R+
Sbjct: 115 CGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS-FANLNNIMR 280
              +  L  ++L +N+++  +           L    + +N    ++P    A L  +  
Sbjct: 173 FRGLHSLDRLLLHQNRVA-HVHPHAFRD-LGRLMTLYLFANNLS-ALPTEALAPLRALQY 229

Query: 281 LDISDN 286
           L ++DN
Sbjct: 230 LRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 110 LIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNF 168
           L   H +   L  + P  F  +  L+   + +N L    P        NL +L L  N  
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRI 165

Query: 169 EGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLAR--YIVLSSNNFTGCLPRSIGY 224
              +P   F+    LD + L+ N     +       L R   + L +NN +     ++  
Sbjct: 166 S-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 225 MKELQEIILMENQL 238
           ++ LQ + L +N  
Sbjct: 224 LRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 18/168 (10%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L  L Y +   N L  +  +TF ++  L    +  NR+    P  A     +L  L L  
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQ 186

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFT-GCLPR 220
           N     + P  F+    L  ++L  N    ++P      L   +Y+ L+ N +   C   
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDC--- 241

Query: 221 SIGYMKE-LQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS 267
               +   LQ+     +++  C              +  + +N   G 
Sbjct: 242 RARPLWAWLQKFRGSSSEVP-C----SLPQRLAGRDLKRLAANDLQGC 284

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 34/212 (16%), Positives = 66/212 (31%), Gaps = 23/212 (10%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           +DL     + N +  +   +F+ +  L+   V                  +L  L L +N
Sbjct: 35  VDL-----SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGS-IPETIGESLA--RYIVLSSNNFTGCLPRS 221
            F  +L    F     L+++ L      G+ +     + L     +VL  NN     P S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 222 I-GYMKELQEIILMENQLSGCLPSEIGSG---------EYKNLTVFDIRSNKFHGSVPQS 271
               M+    + L  N++   +  E                ++T+ D+           +
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 272 FANLNNIMRLDISDNMLTGFVSADICKLPHLL 303
                +I  LD+S N     ++          
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 25/225 (11%)

Query: 106 WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLV-----GPFPTVALTWKRNLY 160
            L  +     N   L             +   D+S N          F  +A T  ++L 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 161 L--------DLRFNNFEGELPPELFQ----TGLDIIFLNHNWFRGSIPETIGESLA--RY 206
           L             NF+ +     F+    +G+    L+ +    ++ +++         
Sbjct: 246 LSNSYNMGSSFGHTNFK-DPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQ 303

Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
           + L+ N        +   +  L ++ L +N L   + S +       L V D+  N    
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFEN-LDKLEVLDLSYNHIR- 360

Query: 267 SVP-QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           ++  QSF  L N+  L +  N L         +L  L       N
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN 253
            +P  +      Y+ LS N+       S   +++LQ + + +      + +    G   +
Sbjct: 27  ELPAHV-----NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG-LSS 80

Query: 254 LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG-FVSADI-CKLPHLLNFTFSNN 310
           L +  +  N+F      +F  L N+  L ++   L G  +S +    L  L      +N
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 41/217 (18%), Positives = 75/217 (34%), Gaps = 19/217 (8%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL 159
           +      LL+L     + N++  I   +F ++  LE   +S N +       A     NL
Sbjct: 62  ISTNT-RLLNL-----HENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANL 114

Query: 160 -YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNF 214
             L+L  N     +P   F   + L  ++L +N    SIP      +   R + L     
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172

Query: 215 TGCLPRSI-GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA 273
              +       +  L+ + L    L   +P+         L   D+  N      P SF 
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTP---LIKLDELDLSGNHLSAIRPGSFQ 228

Query: 274 NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
            L ++ +L +  + +          L  L+    ++N
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 37/185 (20%), Positives = 70/185 (37%), Gaps = 7/185 (3%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L +L       NRL  I    F  + +L+E  + NN +    P+ A     +L  LDL  
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGE 169

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIG 223
                 +    F+  + L  + L     R  IP          + LS N+ +   P S  
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDI 283
            +  LQ++ ++++Q+   +         ++L   ++  N         F  L+++ R+ +
Sbjct: 229 GLMHLQKLWMIQSQIQ-VIERNAFDN-LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 284 SDNML 288
             N  
Sbjct: 287 HHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-Y 160
           P +  L+ L     + N L  I P +F  +  L++  +  +++       A    ++L  
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVE 259

Query: 161 LDLRFNNFEGELPPELFQ--TGLDIIFLNHN 189
           ++L  NN    LP +LF     L+ I L+HN
Sbjct: 260 INLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 19/189 (10%), Positives = 51/189 (26%), Gaps = 33/189 (17%)

Query: 123 IIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGL 181
               T A M+ L    ++N  +             N+  L +   +              
Sbjct: 35  TANITEAQMNSLTYITLANINVTDLTGIEYAH---NIKDLTINNIHAT------------ 79

Query: 182 DIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC 241
           +   ++              +L   + +   + T     ++  +  L  + +  +     
Sbjct: 80  NYNPISGL-----------SNL-ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH 301
           + ++I       +   D+  N     +      L  +  L+I  + +  +    I   P 
Sbjct: 128 ILTKIN--TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY--RGIEDFPK 182

Query: 302 LLNFTFSNN 310
           L      + 
Sbjct: 183 LNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 14/131 (10%)

Query: 194 SIPETIGESLARYIVLS-SNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEY- 251
           +IP++   +   Y+      + T  +  +   M  L  I L    ++     ++   EY 
Sbjct: 16  NIPDS---TFKAYLNGLLGQSSTANI--TEAQMNSLTYITLANINVT-----DLTGIEYA 65

Query: 252 KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF 311
            N+    I +       P   + L+N+ RL I    +T     ++  L  L     S++ 
Sbjct: 66  HNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 312 FQGMAMECISG 322
                +  I+ 
Sbjct: 124 HDDSILTKINT 134

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 43/237 (18%), Positives = 84/237 (35%), Gaps = 19/237 (8%)

Query: 80  DNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDV 139
            NQ   V       +E+   +P      L+L       N +  I  +TF ++H LE   +
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIPSNT-RYLNL-----MENNIQMIQADTFRHLHHLEVLQL 106

Query: 140 SNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIP 196
             N +       A     +L  L+L  N     +P   F+  + L  ++L +N    SIP
Sbjct: 107 GRNSIRQ-IEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIP 163

Query: 197 ETIGESLA--RYIVLSSNNFTGCLPRSI-GYMKELQEIILMENQLSGCLPSEIGSGEYKN 253
                 +     + L        +       +  L+ + L    +   +P+         
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTP---LVG 219

Query: 254 LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           L   ++  N F    P SF  L+++ +L + ++ ++         L  L+    ++N
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 36/185 (19%), Positives = 64/185 (34%), Gaps = 7/185 (3%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L  L       N L  I    F  + +L E  + NN +    P+ A     +L  LDL  
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGE 180

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIG 223
                 +    F+    L  + L     +  +P          + +S N+F    P S  
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDI 283
            +  L+++ +M +Q+S  +      G   +L   ++  N         F  L  ++ L +
Sbjct: 240 GLSSLKKLWVMNSQVSL-IERNAFDG-LASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

Query: 284 SDNML 288
             N  
Sbjct: 298 HHNPW 302

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 16/215 (7%)

Query: 95  EIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALT 154
           EI + LP      L  +       +L  I    F+    LE+ ++S N ++        +
Sbjct: 23  EIPSDLPRNA-IELRFVL-----TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 155 WKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLAR--YIVL 209
               L  + +   N    + PE FQ    L  + +++   +  +P+       +   + +
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDI 135

Query: 210 SSNNFTGCLPRSI--GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS 267
             N     + R+   G   E   + L +N +   + +   +G  +   +    +N     
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT-QLDELNLSDNNNLEEL 193

Query: 268 VPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302
               F   +  + LDIS   +    S  +  L  L
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 18/207 (8%)

Query: 89  IDLNKAEIAAHLPPE----MGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL 144
           I++++ ++   +  +    +  L ++       N L  I PE F N+  L+   +SN  +
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEI--RIEKANNLLYINPEAFQNLPNLQYLLISNTGI 116

Query: 145 VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ---TGLDIIFLNHNWFRGSIPETI-- 199
                   +   + + LD++ N     +    F        I++LN N  +  I  +   
Sbjct: 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN 175

Query: 200 GESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDI 259
           G  L    +  +NN                 + +   ++       + S   +NL     
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-----HSLPSYGLENLKKLRA 230

Query: 260 RSNKFHGSVPQSFANLNNIMRLDISDN 286
           RS      +P +   L  +M   ++  
Sbjct: 231 RSTYNLKKLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN 253
            IP  +  +    +             +     +L++I + +N +   + +++ S     
Sbjct: 23  EIPSDLPRNA-IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN-LPK 80

Query: 254 LTVFDI-RSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           L    I ++N      P++F NL N+  L IS+  +              +     +N
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 24/208 (11%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L + I   A  + +      T A++  +         +        L    NL  L+L+ 
Sbjct: 18  LANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEGVQYLN---NLIGLELKD 72

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIG 223
           N    +L P    T +  + L+ N         I    S+ + + L+S   T      + 
Sbjct: 73  NQIT-DLAPLKNLTKITELELSGN--PLKNVSAIAGLQSI-KTLDLTSTQITD--VTPLA 126

Query: 224 YMKELQEIILMENQLSGCLPSEIGS-GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD 282
            +  LQ + L  NQ++      I       NL    I + +   S     ANL+ +  L 
Sbjct: 127 GLSNLQVLYLDLNQIT-----NISPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLK 179

Query: 283 ISDNMLTGFVSADICKLPHLLNFTFSNN 310
             DN ++    + +  LP+L+     NN
Sbjct: 180 ADDNKISDI--SPLASLPNLIEVHLKNN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 35/186 (18%), Positives = 79/186 (42%), Gaps = 20/186 (10%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L +LI      N++  + P    N+ ++ E ++S N L        L    ++  LDL  
Sbjct: 62  LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQ---SIKTLDLTS 116

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIG-ESLARYIVLSSNNFTGCLPRSIGY 224
                ++ P    + L +++L+ N    +I    G  +L +Y+ + +   +   P  +  
Sbjct: 117 TQIT-DVTPLAGLSNLQVLYLDLNQIT-NISPLAGLTNL-QYLSIGNAQVSDLTP--LAN 171

Query: 225 MKELQEIILMENQLSGCLPSEIGS-GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDI 283
           + +L  +   +N++S     +I       NL    +++N+   S     AN +N+  + +
Sbjct: 172 LSKLTTLKADDNKIS-----DISPLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTL 224

Query: 284 SDNMLT 289
           ++  +T
Sbjct: 225 TNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 23/184 (12%), Positives = 53/184 (28%), Gaps = 18/184 (9%)

Query: 129 ANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLN 187
             +    +     + +        L     +  L          +    +   L  + L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLD---GITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 188 HNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIG 247
            N     +      +    + LS N        +I  ++ ++ + L   Q+     +++ 
Sbjct: 72  DNQIT-DLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQI-----TDVT 123

Query: 248 S-GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFT 306
                 NL V  +  N+   +     A L N+  L I +  ++      +  L  L    
Sbjct: 124 PLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLK 179

Query: 307 FSNN 310
             +N
Sbjct: 180 ADDN 183

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 26/220 (11%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L  L      ++         +     +   + + +        +  +      +LD   
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT-RMVHMLCPSKISPFLHLDFSN 333

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG-----ESLARYIVLSSNNFTGCL 218
           N    +   E     T L+ + L  N  +  + +        +SL + + +S N+ +   
Sbjct: 334 NLLT-DTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSL-QQLDISQNSVSYDE 390

Query: 219 PRSI-GYMKELQEIILMENQLS----GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA 273
            +    + K L  + +  N L+     CLP          + V D+ SNK   S+P+   
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--------RIKVLDLHSNKIK-SIPKQVV 441

Query: 274 NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
            L  +  L+++ N L         +L  L       N + 
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 10/181 (5%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL--VG 146
             ++   +   L P    +   ++   + N L   + E   ++  LE   +  N+L  + 
Sbjct: 307 FTVSGTRMVHMLCP--SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 147 PFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA 204
               +    K    LD+  N+   +           L  + ++ N    +I   +   + 
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI- 423

Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264
           + + L SN     +P+ +  ++ LQE+ +  NQL   +P  I      +L    + +N +
Sbjct: 424 KVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFDR-LTSLQKIWLHTNPW 480

Query: 265 H 265
            
Sbjct: 481 D 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 42/245 (17%), Positives = 78/245 (31%), Gaps = 28/245 (11%)

Query: 90  DLNKAEIAAHLPPE-MGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG-P 147
           ++++  I+  L    +  L  L     + NR+  +    F     LE  D+S+N+LV   
Sbjct: 27  NISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85

Query: 148 F-PTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA 204
             PTV L      +LDL FN F+     + F   + L  + L+      S    I     
Sbjct: 86  CHPTVNLK-----HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEI---GSGEYKNLTVFDIRS 261
             ++L               +++     L     +      I         NL + +I+ 
Sbjct: 141 SKVLLVLGETY-GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 262 NKFHGSVPQSFANLNNIM-----------RLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
                      + L  +             ++ + N     +   +     +  F+ SN 
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ--LVWHTTVWYFSISNV 257

Query: 311 FFQGM 315
             QG 
Sbjct: 258 KLQGQ 262

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 16/219 (7%)

Query: 103 EMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162
            +  +L+        + L  +      +   L   + + N  +     V  T     Y  
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT--TVWYFS 253

Query: 163 LRFNNFEGELPPELFQ---TGLDIIFLNHNWFR--GSIPETIGESLAR--YIVLSSNNFT 215
           +     +G+L    F    T L  + ++       G     I E  +       + +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 216 GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS---F 272
                    +     +    N L+     E   G    L    ++ N+    + +     
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTD-TVFEN-CGHLTELETLILQMNQLK-ELSKIAEMT 370

Query: 273 ANLNNIMRLDISDNMLTGFVSADIC-KLPHLLNFTFSNN 310
             + ++ +LDIS N ++       C     LL+   S+N
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN 253
            +P+ + +     + +S N  +      I  + +L+ +I+  N++   L   +     + 
Sbjct: 14  HVPKDLSQKT-TILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFN-QE 70

Query: 254 LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGF-VSADICKLPHLLNFTFSNNFF 312
           L   D+  NK    +        N+  LD+S N      +  +   +  L     S    
Sbjct: 71  LEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

Query: 313 QGMAMECISGSRDDVYFEEKGNCLAEME 340
           +  ++  I+           G    E E
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKE 155

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 37/249 (14%), Positives = 69/249 (27%), Gaps = 50/249 (20%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRF-- 165
           L L     +T  L        A+++  +   V             L       L + F  
Sbjct: 120 LGL-----STTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLA--------------RYIVLSS 211
           N     +     +T  ++   N          +   S+                 I  + 
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 212 NNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEY---KNLTVFDIRSNKFHGS- 267
           N+F   L   + +   +    +   +L G L            K L++  + S+ F    
Sbjct: 235 NSFIRIL--QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 268 --VPQSFANLN---------------------NIMRLDISDNMLTGFVSADICKLPHLLN 304
             + + F+N+N                       + LD S+N+LT  V  +   L  L  
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 305 FTFSNNFFQ 313
                N  +
Sbjct: 353 LILQMNQLK 361

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 63.6 bits (153), Expect = 1e-10
 Identities = 31/173 (17%), Positives = 49/173 (28%)

Query: 455 PPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMP 514
                 PP   PP +    P    P+  +P  A S  +    P + P   ++ PP     
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS 574
             S         P +P   + P P +     TP+   PP + S         L     R+
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 575 PPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
               +   +   S     +S  P +   P         +         P  P 
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 60.5 bits (145), Expect = 9e-10
 Identities = 30/191 (15%), Positives = 45/191 (23%), Gaps = 3/191 (1%)

Query: 435 SSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPS 494
                T    ++ P P   +PP  +    S   P   AP  +   S     P  +  +  
Sbjct: 2   EQRRVTDFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQ 61

Query: 495 PPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPP 554
             P   P   R       + SPS+P     P  PSP          +  PP  + +    
Sbjct: 62  ARP---PARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQD 118

Query: 555 VQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSP 614
             S                    +S   +     P     P                 + 
Sbjct: 119 TISELASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQ 178

Query: 615 PPPVQSPPPPS 625
           P       P  
Sbjct: 179 PGLPGLVLPYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 55.9 bits (133), Expect = 2e-08
 Identities = 27/174 (15%), Positives = 42/174 (24%), Gaps = 4/174 (2%)

Query: 431 PPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQST 490
           PP+ + P      P    P       P+S    S       A P      P +    + +
Sbjct: 17  PPRIAPPKLACRTPSPARPA---LRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLS 73

Query: 491 PQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLS 550
                 P + P     P  PSP        P    PP              +     +  
Sbjct: 74  VDEVSSPST-PEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 551 PPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV 604
               V++    +        P     P  P    +P+         P  P   +
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVL 186

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 53.6 bits (127), Expect = 1e-07
 Identities = 24/183 (13%), Positives = 40/183 (21%), Gaps = 4/183 (2%)

Query: 380 PSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTP 439
                       P  A  TPS   P + +P   T    +  R    P   +   P+    
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 440 TTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVS 499
                +   P   ++P   + P     P  +          P     AQ     S     
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACP----SPGQKIKKSTPAAGQPPHLTSAQDQDTISELASC 126

Query: 500 YPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPP 559
                        + + +        P     P         +     +L+ P       
Sbjct: 127 LQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVL 186

Query: 560 PPS 562
           P  
Sbjct: 187 PYK 189

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 53.2 bits (126), Expect = 2e-07
 Identities = 26/195 (13%), Positives = 42/195 (21%), Gaps = 22/195 (11%)

Query: 390 KTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPP 449
               P PP  + P     +P+P                    P   +P   T   ++   
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPAR------------------PALRAPASATSGSRKRAR 52

Query: 450 PLVQSPPPSSPPPVS----YPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVR 505
           P        + PP            S+P     P   + P      + S P    PP + 
Sbjct: 53  PPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLT 112

Query: 506 SPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPP 565
           S      +   +S              +              +   P        P+   
Sbjct: 113 SAQDQDTISELASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQR 172

Query: 566 VLYPPPVRSPPPSSP 580
                    P    P
Sbjct: 173 FHALAQPGLPGLVLP 187

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 28/180 (15%), Positives = 40/180 (22%), Gaps = 7/180 (3%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
             P  P    PK +  TP+  P  PA   P  +  S       PP        R      
Sbjct: 13  RRPGPPRIAPPKLACRTPS--PARPALRAPASA-TSGSRKRARPPAAPGRDQARPPARRR 69

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
           +       S   T   P     P        S P    PP + SA     +   +S    
Sbjct: 70  LRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
                     +                  +   P       +P    +    +   P   
Sbjct: 130 ARELGARVRALKASA----QDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLV 185

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 25/170 (14%), Positives = 42/170 (24%)

Query: 352 VSKPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTP 411
             +P              PS        P+++T     +   PA P      PP      
Sbjct: 12  RRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLR 71

Query: 412 PTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRS 471
            + +    P     P I   P P      + P   +PP L  +    +   ++       
Sbjct: 72  LSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRAR 131

Query: 472 APPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPP 521
                     +S   A  +  P        P     P      + + P  
Sbjct: 132 ELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGL 181

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 63.8 bits (154), Expect = 1e-10
 Identities = 30/182 (16%), Positives = 48/182 (26%), Gaps = 12/182 (6%)

Query: 451 LVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQP---SPPPVSYPPPVRSP 507
           ++     ++    +      +     P  +  S   ++   QP   S P    P  V   
Sbjct: 1   MLSGKKAAAAAAAAAAAATGT--EAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGER 58

Query: 508 PPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVL 567
            P    P  +SPP   + PP S  P + P  V  S  P  +     P             
Sbjct: 59  TPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRA-- 116

Query: 568 YPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
                +           + S           +        PPP    PP  ++   P  P
Sbjct: 117 -----KVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEP 171

Query: 628 PP 629
             
Sbjct: 172 SG 173

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 27/177 (15%), Positives = 41/177 (23%), Gaps = 9/177 (5%)

Query: 354 KPVDCSKDECSWGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPT 413
           K    +    +   +   T + P     +   ++    PA       +    V   TP  
Sbjct: 6   KAAAAAAAAAA---AATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRK 62

Query: 414 WEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAP 473
                 PR   P  + EPP  + P            P+       +  P       R   
Sbjct: 63  ---KEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPM---ETGIAETPEGRRTSRRKRA 116

Query: 474 PPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSP 530
                    S          S    +         PP P  +P        P  PS 
Sbjct: 117 KVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG 173

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 32/185 (17%), Positives = 45/185 (24%), Gaps = 14/185 (7%)

Query: 381 STSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPT 440
           + +  A    T A         +    +  P              P  V P      TP 
Sbjct: 11  AAAAAAAATGTEAGPGTAGGSENGSEVAAQPAGLSG---------PAEVGPGAVGERTPR 61

Query: 441 TMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSP---MPSPSSPPPAQSTPQPSPPP 497
              P +  PP   + PP S  P + P  V  +  P       +P     ++         
Sbjct: 62  KKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKR-AKVEY 120

Query: 498 VSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPP-PVRSSPPPTPSLSPPPPVQ 556
                 + +                       PPP   PP     S P  PS       Q
Sbjct: 121 REMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQ 180

Query: 557 SPPPP 561
           S  P 
Sbjct: 181 SRLPH 185

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 52.7 bits (125), Expect = 3e-07
 Identities = 29/162 (17%), Positives = 39/162 (24%), Gaps = 8/162 (4%)

Query: 432 PKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSY-PPPVRSAPPPSPMPSPSSPPPAQST 490
               +          E    V + P     P    P  V    P    P  +SPP   + 
Sbjct: 17  AATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLAE 76

Query: 491 PQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLS 550
           P  S  P + P     P   +PM +  +  P                  R       +LS
Sbjct: 77  PPGSAGPQAGPT--VVPGSATPMETGIAETPEGRRTSRRKRA---KVEYREMDESLANLS 131

Query: 551 PPPPVQSPPPPSP--PPVLYPPPVRSPPPSSPTPSPSPSPPP 590
                      +        PPP    PP     S    P  
Sbjct: 132 EDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSG 173

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 60.4 bits (146), Expect = 5e-10
 Identities = 18/145 (12%), Positives = 30/145 (20%)

Query: 483 SPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSS 542
           +               S    + S     P+   + PP  Y   P    P+S   P   S
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
                +    P          P    P  +          + SP+  P +        P 
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125

Query: 603 PVGSPPPPIQSPPPPVQSPPPPSPP 627
                   +        +       
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKL 150

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 24/158 (15%), Positives = 28/158 (17%), Gaps = 10/158 (6%)

Query: 472 APPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPP 531
           A        PS    + +           P    + PP     SP    P+    PP   
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 532 PVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPP 591
              Y       P        P P  S P                   S   S   S P  
Sbjct: 66  LQGYQTY-GHFPSRAIKSEYPDPYTSSPESIMGY---------SYMDSYQTSSPASIPHL 115

Query: 592 IQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           I       P  P                          
Sbjct: 116 ILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTF 153

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 57.3 bits (138), Expect = 6e-09
 Identities = 32/159 (20%), Positives = 42/159 (26%), Gaps = 12/159 (7%)

Query: 445 KQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPV 504
           K E    V    PS     S    + SA    P+   + PP                P V
Sbjct: 3   KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRS----------PFV 52

Query: 505 RSPPPPS-PMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP 563
            SP   + P          Y   P       YP P  SSP      S     Q+  P S 
Sbjct: 53  TSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASI 112

Query: 564 PPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
           P  L    ++  P      +   +     Q+        
Sbjct: 113 PH-LILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKL 150

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 19/146 (13%), Positives = 37/146 (25%), Gaps = 3/146 (2%)

Query: 421 RHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPS 480
           + +    +++         + +         +     + PP      P  ++P    MP 
Sbjct: 3   KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPP 62

Query: 481 PSSPPPAQSTPQ-PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV 539
             S    Q+    PS    S  P   +  P S M          S P   P  +     +
Sbjct: 63  HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLIL--ELL 120

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSPPP 565
           +  P      +           +   
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSK 146

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 20/148 (13%), Positives = 30/148 (20%), Gaps = 2/148 (1%)

Query: 404 PPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMP--PKQEPPPLVQSPPPSSPP 461
             V    P     +   ++        P   ++  PT     P    P  +  PP  S  
Sbjct: 8   SQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQ 67

Query: 462 PVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPP 521
                    S    S  P P +  P                P   P     +       P
Sbjct: 68  GYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEP 127

Query: 522 VYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
                  +          +     T  L
Sbjct: 128 QVQAKIMAYLQQEQANRSKHEKLSTFGL 155

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 22/150 (14%), Positives = 35/150 (23%), Gaps = 13/150 (8%)

Query: 388 EPKTPAPAPPTPSLPS-----PPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTM 442
             +     P   ++ S        +   P             P      P  +SP   TM
Sbjct: 7   MSQVIQAMPSDLTISSAIQNIHSASKGLPLN------HAALPPTDYDRSPFVTSPISMTM 60

Query: 443 PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPP 502
           PP              S    S  P   ++ P S M          S+P   P  +    
Sbjct: 61  PPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLIL--E 118

Query: 503 PVRSPPPPSPMPSPSSPPPVYSPPPPSPPP 532
            ++  P    + +             S   
Sbjct: 119 LLKCEPDEPQVQAKIMAYLQQEQANRSKHE 148

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 41.1 bits (96), Expect = 9e-04
 Identities = 17/157 (10%), Positives = 29/157 (18%), Gaps = 11/157 (7%)

Query: 369 PPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPII 428
                + P+    +S            P   +   PP      P           +   +
Sbjct: 8   SQVIQAMPSDLTISSAIQNIHSASKGLPLNHA-ALPPTDYDRSPFV------TSPISMTM 60

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
                          P +        P  SSP  +                SP+S P   
Sbjct: 61  PPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSY----MDSYQTSSPASIPHLI 116

Query: 489 STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
                  P                  + S    + + 
Sbjct: 117 LELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTF 153

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 27/214 (12%), Positives = 54/214 (25%), Gaps = 53/214 (24%)

Query: 134 LEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNF--EG--------ELPPELFQTGLD 182
           ++  D+    L        L   +    + L                  + P L    L+
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL--AELN 62

Query: 183 IIFLNHNWFRGSIPETIGESLARYI--VLSSNNFTGCLPRSIGYMKELQEIILMENQLS- 239
              L  N         +G+     +   L + +              +Q++ L    L+ 
Sbjct: 63  ---LRSNE--------LGDVGVHCVLQGLQTPSCK------------IQKLSLQNCCLTG 99

Query: 240 -GCLPSEIGSG--EYKNLTVFDIRSNKFHGSVPQSFA-----NLNNIMRLDISDNMLTGF 291
            GC    + S       L    +  N    +  Q            + +L +    L+  
Sbjct: 100 AGC--GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157

Query: 292 VSADICKL----PHLLNFTFSNNFFQGMAMECIS 321
               +  +    P     T SNN      +  + 
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 45/343 (13%), Positives = 90/343 (26%), Gaps = 93/343 (27%)

Query: 26  DLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERF 85
           D++ +     R       LQ  +           +  +    C+    +      N    
Sbjct: 9   DIQCEELSDARWAELLPLLQQCQVV------RLDDCGLTEARCKD---ISSALRVNPA-- 57

Query: 86  VAMIDL--NK------AEIAAHLPPEMGWL--LDLIYFHANTNRL----CGIIPETFANM 131
           +A ++L  N+        +   L      +  L L         L    CG++  T   +
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL-----QNCCLTGAGCGVLSSTLRTL 112

Query: 132 HRLEEFDVSNNRLVGP----------FPTVALTWKRNLYLDLRFNNFEGELPPELFQ--- 178
             L+E  +S+N L              P   L       L L + +        L     
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE-----KLQLEYCSLSAASCEPLASVLR 167

Query: 179 -----TGLDIIFLNHNWFRGSIPETIGESLARYI--VLSSNNFTGCLPRSIGYMKELQEI 231
                  L    +++N         I E+  R +   L  +               L+ +
Sbjct: 168 AKPDFKELT---VSNND--------INEAGVRVLCQGLKDSPCQ------------LEAL 204

Query: 232 ILMENQLS--GCLPSEIGSG--EYKNLTVFDIRSNKFHGSVPQSFAN-----LNNIMRLD 282
            L    ++   C   ++        +L    + SNK                 + +  L 
Sbjct: 205 KLESCGVTSDNC--RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 283 ISDNMLT----GFVSADICKLPHLLNFTFSNNFFQGMAMECIS 321
           I +  +T    G +   +     L   + + N         + 
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 8e-10
 Identities = 32/214 (14%), Positives = 75/214 (35%), Gaps = 22/214 (10%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFN 166
           L LI        L  I    F+N+  +    VS +  +    + +      + ++++R  
Sbjct: 36  LKLIE-----THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 167 NFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETI---GESLARYIVLSSNNFTGCLPRS 221
                + P+  +    L  + + +   +   P+        +   + ++ N +   +P +
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 222 I--GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ-SFANL-NN 277
              G   E   + L  N  +  +     +G    L    +  NK+   + + +F  + + 
Sbjct: 150 AFQGLCNETLTLKLYNNGFTS-VQGYAFNG--TKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 278 IMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF 311
              LD+S   +T  + +    L HL      N +
Sbjct: 207 PSLLDVSQTSVT-ALPSKG--LEHLKELIARNTW 237

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.5 bits (146), Expect = 9e-10
 Identities = 29/209 (13%), Positives = 72/209 (34%), Gaps = 26/209 (12%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
             + I  +     +   +      ++ +++   +N+ +        L    N+  L L  
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLP---NVTKLFLNG 74

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIG-ESLA--RYIVLSSNNFTGCLPRSI 222
           N    ++ P      L  +FL+ N     I +    + L   + + L  N  +  +   +
Sbjct: 75  NKLT-DIKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGIS-DIN-GL 127

Query: 223 GYMKELQEIILMENQLSGCLPSEIGS-GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281
            ++ +L+ + L  N++     ++I        L    +  N+    +    A L  +  L
Sbjct: 128 VHLPQLESLYLGNNKI-----TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 180

Query: 282 DISDNMLTGFVSADICKLPHLLNFTFSNN 310
            +S N ++      +  L +L      + 
Sbjct: 181 YLSKNHISDL--RALAGLKNLDVLELFSQ 207

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 6e-08
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 30/212 (14%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L  +    AN + +  +  +    +  + +  ++ N+L    P   L    NL +L L  
Sbjct: 42  LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKPLTNLK---NLGWLFLDE 96

Query: 166 NNFEGELPP--ELFQTGLDIIFLNHNWFRGSIPETIGESLA-----RYIVLSSNNFTGCL 218
           N  + +L    +L    L  + L HN     I   I   L        + L +N  T   
Sbjct: 97  NKIK-DLSSLKDL--KKLKSLSLEHN----GI-SDI-NGLVHLPQLESLYLGNNKITD-- 145

Query: 219 PRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNI 278
              +  + +L  + L +NQ+S      +       L    +  N    S  ++ A L N+
Sbjct: 146 ITVLSRLTKLDTLSLEDNQIS----DIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNL 199

Query: 279 MRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
             L++               L        ++ 
Sbjct: 200 DVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 32/146 (21%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 467 PPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPP 526
           PP +         + ++  P          P   P P        P+     P      P
Sbjct: 85  PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
                  +      +S    P+    PP +  PPP       PP +  PPP    P   P
Sbjct: 145 QGRGTVAAAAAAATASIAGAPT--QYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202

Query: 587 SPPPPIQSPPPTSPPPPVGSPPPPIQ 612
              PP +  P   PPP +  PPP ++
Sbjct: 203 MGIPPGRGTPMGMPPPGMRPPPPGMR 228

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 56.6 bits (136), Expect = 4e-09
 Identities = 29/147 (19%), Positives = 39/147 (26%)

Query: 434 PSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQP 493
              P P      + P       P          P     P      +         + Q 
Sbjct: 82  VEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQV 141

Query: 494 SPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPP 553
             P         +    + +    +  P     PP P     PPP    PPP       P
Sbjct: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGP 201

Query: 554 PVQSPPPPSPPPVLYPPPVRSPPPSSP 580
           P+  PP    P  + PP +R PPP   
Sbjct: 202 PMGIPPGRGTPMGMPPPGMRPPPPGMR 228

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 3/151 (1%)

Query: 479 PSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPP 538
            S +   P       +  P++           +    P+  P   +P   + P      P
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 539 VRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPT 598
            +    P    +      +            PP R  PP        P            
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 599 SPPPPVGSPPP---PIQSPPPPVQSPPPPSP 626
              PP+G PP    P+  PPP ++ PPP   
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGMRPPPPGMR 228

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 33/149 (22%), Positives = 44/149 (29%), Gaps = 1/149 (0%)

Query: 424 VPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSS 483
           +  + VE P P       +P                  P   P P   A    P+     
Sbjct: 77  LVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGG 136

Query: 484 PPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSS-PPPVYSPPPPSPPPVSYPPPVRSS 542
           P     TPQ      +      +    +P   P     P       +PPP    PP    
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPPP 571
           PP  P +  PP   +P    PP +  PPP
Sbjct: 197 PPMGPPMGIPPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 29/143 (20%), Positives = 38/143 (26%), Gaps = 6/143 (4%)

Query: 487 AQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
            +  P         P    +  P     +    P      P    P     PVR    P+
Sbjct: 82  VEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA---GVPMPQAPAGLAGPVRGVGGPS 138

Query: 547 PSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
             +  P    +    +         +   P   P     P PP    +PPP    PP G 
Sbjct: 139 QQVMTPQGRGTVAAAAAAA---TASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM 195

Query: 607 PPPPIQSPPPPVQSPPPPSPPPP 629
            PP       P     P   PPP
Sbjct: 196 RPPMGPPMGIPPGRGTPMGMPPP 218

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 27/144 (18%), Positives = 34/144 (23%), Gaps = 3/144 (2%)

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP 544
           PP + T     P                      P P        P      P  +   P
Sbjct: 85  PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV 604
                       +    +  P  YPP         P       PP  +  PP   PP   
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPG---RGGPPPPMGRGAPPPGMMGPPPGMRPPMGP 201

Query: 605 GSPPPPIQSPPPPVQSPPPPSPPP 628
               PP +  P  +  P    PPP
Sbjct: 202 PMGIPPGRGTPMGMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 29/144 (20%), Positives = 38/144 (26%)

Query: 420 PRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP 479
           P  K   I   P   ++  P          P     P +          V         P
Sbjct: 85  PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV 539
                  A +    +    +          P P     +PPP    PPP   P   PP  
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSP 563
                 TP   PPP ++ PPP   
Sbjct: 205 IPPGRGTPMGMPPPGMRPPPPGMR 228

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 37/154 (24%), Positives = 43/154 (27%), Gaps = 5/154 (3%)

Query: 401 LPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSP 460
           L S  V  P P      RVP                  P  +P  Q P  L         
Sbjct: 77  LVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGG 136

Query: 461 PPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPP 520
           P      P       +   + ++      T  P       PP  R  PPP  M  P    
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196

Query: 521 PVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPP 554
           P   PP   PP    P        P P + PPPP
Sbjct: 197 PPMGPPMGIPPGRGTPM-----GMPPPGMRPPPP 225

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 25/149 (16%), Positives = 37/149 (24%)

Query: 437 PTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPP 496
            + T   P  +   + + P   +              P       +    A        P
Sbjct: 78  VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP 137

Query: 497 PVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQ 556
                 P       +   + ++         P       PP  R +PPP     PP    
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 557 SPPPPSPPPVLYPPPVRSPPPSSPTPSPS 585
              PP   P     P+  PPP    P P 
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGMRPPPPG 226

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 2/117 (1%)

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPP--VLYPPPV 572
           +   PPP  +     P   +   P           +  P  Q+P   + P   V  P   
Sbjct: 81  TVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ 140

Query: 573 RSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
              P    T + + +      +  PT  PP  G PPPP+    PP     PP    P
Sbjct: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 25/116 (21%), Positives = 32/116 (27%)

Query: 434 PSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQP 493
           P+       P     P      P            V +A   +      +P         
Sbjct: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGG 174

Query: 494 SPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
            PPP+    P      P P   P   PP+  PP    P    PP +R  PP    L
Sbjct: 175 PPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGL 230

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 24/148 (16%), Positives = 34/148 (22%), Gaps = 2/148 (1%)

Query: 384 TPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMP 443
           +   E   P          +     P         +P     P                 
Sbjct: 79  SMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS 138

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPP 503
            +   P    +   ++    +      +  PP     P         P    PP    PP
Sbjct: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198

Query: 504 VRSPP--PPSPMPSPSSPPPVYSPPPPS 529
           +  P   PP        PPP   PPPP 
Sbjct: 199 MGPPMGIPPGRGTPMGMPPPGMRPPPPG 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 28/209 (13%), Positives = 72/209 (34%), Gaps = 26/209 (12%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
             + I  +     +   +      ++ +++   +N+ +        L    N+  L L  
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLP---NVTKLFLNG 77

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIG-ESLA--RYIVLSSNNFTGCLPRSI 222
           N    ++ P      L  +FL+ N     + +    + L   + + L  N  +  +   +
Sbjct: 78  NKLT-DIKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DIN-GL 130

Query: 223 GYMKELQEIILMENQLSGCLPSEIGS-GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281
            ++ +L+ + L  N++     ++I        L    +  N+    +    A L  +  L
Sbjct: 131 VHLPQLESLYLGNNKI-----TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 183

Query: 282 DISDNMLTGFVSADICKLPHLLNFTFSNN 310
            +S N ++      +  L +L      + 
Sbjct: 184 YLSKNHISDL--RALAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 32/213 (15%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L  +    AN + +  +  +    +  + +  ++ N+L    P   L    NL +L L  
Sbjct: 45  LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKPLANLK---NLGWLFLDE 99

Query: 166 NNFEGELPP--ELFQTGLDIIFLNHNWFRGSIPETIGESLA-----RYIVLSSNNFTGCL 218
           N  + +L    +L    L  + L HN     I   I   L        + L +N  T   
Sbjct: 100 NKVK-DLSSLKDL--KKLKSLSLEHN----GI-SDI-NGLVHLPQLESLYLGNNKITD-- 148

Query: 219 PRSIGYMKELQEIILMENQLSGCLPSEIGS-GEYKNLTVFDIRSNKFHGSVPQSFANLNN 277
              +  + +L  + L +NQ+S     +I        L    +  N    S  ++ A L N
Sbjct: 149 ITVLSRLTKLDTLSLEDNQIS-----DIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKN 201

Query: 278 IMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           +  L++               L        ++ 
Sbjct: 202 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 31/218 (14%), Positives = 65/218 (29%), Gaps = 22/218 (10%)

Query: 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL 159
              +      L     +  +   ++     +   L+E +  N   +     +       L
Sbjct: 341 WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 160 YLDLRFNNFEGELPPELFQTGLDII------FLNHNWFRGSIPETIGESLARYIVLSSNN 213
           Y       F            +D +       L   +   +    +  +  R + L+  +
Sbjct: 400 YEKETLQYFST-------LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 214 FTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA 273
            T  L   +  +  +  + L  N+L   LP  + +   + L V     N    +V    A
Sbjct: 453 LT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAA--LRCLEVLQASDNAL-ENVD-GVA 505

Query: 274 NLNNIMRLDISDNMLTGFVS-ADICKLPHLLNFTFSNN 310
           NL  +  L + +N L    +   +   P L+      N
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 8e-09
 Identities = 36/287 (12%), Positives = 79/287 (27%), Gaps = 21/287 (7%)

Query: 26  DLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERF 85
             ++        +   VG +     +  D    +  W   D       +    +      
Sbjct: 251 SREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAAS-- 308

Query: 86  VAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLV 145
             + D         +        + +         C       A   +L   ++S  +  
Sbjct: 309 --LNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWC----RDSATDEQLFRCELSVEKST 362

Query: 146 GPFPTVALTWK--RNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESL 203
               +   + K  + L  + ++      L          +++        S  + +    
Sbjct: 363 -VLQSELESCKELQELEPENKWCLLTIILLMRALDP---LLYEKETLQYFSTLKAVDPMR 418

Query: 204 ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK 263
           A Y+    + F            +++ + L    L+  L       +   +T  D+  N+
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC---HLEQLLLVTHLDLSHNR 474

Query: 264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
              ++P + A L  +  L  SDN L       +  LP L      NN
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN 518

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 43/237 (18%), Positives = 72/237 (30%), Gaps = 53/237 (22%)

Query: 108 LDLIYFHANTNRL----CGIIPETFANMHRLEEFDVSNN---RLVGPFPTV------ALT 154
           + L     + N +       + E  A+   LE  + S+    R+    P        AL 
Sbjct: 37  IVL-----SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91

Query: 155 WKRNL-YLDLRFNNFEGE----LPPEL-FQTGLDIIFLNHNWFRGSIPETIGESLARYI- 207
               L  + L  N F       L   L   T L+ ++L++N         +G      I 
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN--------GLGPQAGAKIA 143

Query: 208 -VLSSNNFTGCLPRSIGYMKELQEIILMENQLS--GCLPSEIGSG--EYKNLTVFDIRSN 262
             L           +      L+ II   N+L        E       ++ L    +  N
Sbjct: 144 RALQELAVNKKAKNA----PPLRSIICGRNRLENGSM--KEWAKTFQSHRLLHTVKMVQN 197

Query: 263 KFH--GSVP---QSFANLNNIMRLDISDNMLT--GFVS-AD-ICKLPHLLNFTFSNN 310
                G      +  A    +  LD+ DN  T  G  + A  +   P+L     ++ 
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 24/219 (10%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L  L+  H             ++    +    +S +        V      +  +L+   
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT-PFIHMVCPPSPSSFTFLNFTQ 362

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSI- 222
           N F  +   +       L  + L  N  + +  +    +     + + +     L     
Sbjct: 363 NVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 223 ----GYMKELQEIILMENQLSG----CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN 274
                + + +  + L  N L+G    CLP          + V D+ +N+   S+P+   +
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPP--------KVKVLDLHNNRIM-SIPKDVTH 471

Query: 275 LNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
           L  +  L+++ N L         +L  L      +N + 
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 44/207 (21%)

Query: 90  DLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL----V 145
            L+ ++                + +   N     + +  + + RL+   +  N L     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 146 GPFPTVALTWKRNLYL-DLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLA 204
               T  ++   +L   D+  N+               I+ LN                 
Sbjct: 395 VALMTKNMS---SLETLDVSLNSLNSHAYDRTCAWAESILVLN----------------- 434

Query: 205 RYIVLSSNNFTG----CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR 260
               LSSN  TG    CLP        ++ + L  N++   +P ++   +   L   ++ 
Sbjct: 435 ----LSSNMLTGSVFRCLPPK------VKVLDLHNNRIMS-IPKDVTHLQ--ALQELNVA 481

Query: 261 SNKFHGSVPQ-SFANLNNIMRLDISDN 286
           SN+   SVP   F  L ++  + + DN
Sbjct: 482 SNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 23/232 (9%)

Query: 99  HLPP-EMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG-PF-PTVALTW 155
            L   ++ +L +L     + NR+  +    F     LE  DVS+NRL      P  +L  
Sbjct: 66  ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLR- 124

Query: 156 KRNLYLDLRFNNFEGELPP-ELFQ--TGLDIIFLNHNWFRGSIPETIGESL---ARYIVL 209
               +LDL FN+F+  LP  + F   T L  + L+   FR  +       L      + L
Sbjct: 125 ----HLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDL 178

Query: 210 SSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP 269
            S +  G    S+         ++        +   +      +L + +I+ N  +    
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238

Query: 270 QSFAN----LNNIMRLDISDNMLTGFVSADICKL---PHLLNFTFSNNFFQG 314
            +F +       ++ + +     T   S  + +      +      N     
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 28/260 (10%), Positives = 69/260 (26%), Gaps = 18/260 (6%)

Query: 99  HLPPEMGWLLDLIYFHANTNRL-CGIIPETFANMHRLEEFDVSNNRL-VGPFPTVALTWK 156
           ++      +  L +   + N      + + F N+ +L    +S  +        VA    
Sbjct: 114 NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171

Query: 157 RNLYLDLRFNNFEGELPPELFQTGLDI--IFLNHNWFRGSIPETIGESLA----RYIVLS 210
             + LDL   + +G     L      +  +  + N            +L       I L+
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231

Query: 211 SNNFTGCLPRSIGYMKELQEIILMENQLSG---CLPSEIGSGEYKNLTVFDIRSNKFHGS 267
             N    +       +    + +    +     C          + +   +I +      
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291

Query: 268 VPQSFAN-----LNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG 322
           + +         L ++M   + + +      A       +     S +    + M C   
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351

Query: 323 SRDDVYFEEKGNCLAEMEYQ 342
                +     N   +  +Q
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQ 371

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 24/220 (10%), Positives = 60/220 (27%), Gaps = 14/220 (6%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLE-EFDVSNNRLVGPFPTVALTWKRNLYL-DLRF 165
           L  I     +  + G   E+    +          N L      +++    +L L +++ 
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 166 NNFEGELPPELF---QTGLDIIFLNHNWFRGS------IPETIGESLARYIVLSSNNFTG 216
           N+   +           G  ++ +       +      + +        Y+ + +   T 
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYK---NLTVFDIRSNKFHGSVPQSFA 273
            + R      E     LM   +   +        Y     + +  +  +           
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350

Query: 274 NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
           + ++   L+ + N+ T  V      L  L       N  +
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 34/206 (16%), Positives = 72/206 (34%), Gaps = 25/206 (12%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L + +  +     +  +   +   +  ++ F+  N+ +         T   NL  L L  
Sbjct: 18  LANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAGMQFFT---NLKELHLSH 72

Query: 166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYM 225
           N    +L P    T L+ + +N N  + ++       L   + L +N        S+ ++
Sbjct: 73  NQIS-DLSPLKDLTKLEELSVNRNRLK-NLNGIPSACL-SRLFLDNNELRD--TDSLIHL 127

Query: 226 KELQEIILMENQLSGCLPSEI-GSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS 284
           K L+ + +  N+L       I   G    L V D+  N+   +       L  +  +D++
Sbjct: 128 KNLEILSIRNNKLK-----SIVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLT 180

Query: 285 DNMLTGFVSADICKLPHLLNFTFSNN 310
                   +  +   P L     +N 
Sbjct: 181 GQKCV---NEPVKYQPEL---YITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 33/191 (17%)

Query: 129 ANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLN 187
             +    + ++    +        L+    +   +   +N +  L    F T L  + L+
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQKELS---GVQNFNGDNSNIQ-SLAGMQFFTNLKELHLS 71

Query: 188 HNWFRGSIPETIGESLA-----RYIVLSSNNFTGCLPRSI--GYMKELQEIILMENQLSG 240
           HN     I   +   L        + ++ N        ++       L  + L  N+L  
Sbjct: 72  HN----QI-SDL-SPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELR- 119

Query: 241 CLPSEIGS-GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299
               +  S    KNL +  IR+NK           L+ +  LD+  N +T      + +L
Sbjct: 120 ----DTDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNT--GGLTRL 171

Query: 300 PHLLNFTFSNN 310
             +     +  
Sbjct: 172 KKVNWIDLTGQ 182

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 14/92 (15%), Positives = 23/92 (25%)

Query: 525 PPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP 584
           P  P+ P          +    P+   PP + + P   P P     P    PP     + 
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 585 SPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPP 616
           + +                       +  PP 
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPT 93

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 54.2 bits (130), Expect = 9e-08
 Identities = 16/93 (17%), Positives = 23/93 (24%), Gaps = 1/93 (1%)

Query: 430 EPPKPSSP-TPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
           +P  P+SP TP      Q       +P P +        P          P+P  P    
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 489 STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPP 521
           +T       +                    PP 
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPT 93

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 1/90 (1%)

Query: 457 PSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSP 516
           P+SP         ++A      P+P +   A  T  P P     P     P P     + 
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAA-PTGDPKPKKNKKPKNPTPPRPAGDNATV 63

Query: 517 SSPPPVYSPPPPSPPPVSYPPPVRSSPPPT 546
           ++               +        PPPT
Sbjct: 64  AAGHATLREHLRDIKAENTDANFYVCPPPT 93

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 14/93 (15%), Positives = 23/93 (24%)

Query: 507 PPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPV 566
           P  P+   +P       +       P         +  P P  +  P   +PP P+    
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 567 LYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTS 599
                  +            +       PPPT 
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPS 587
           P+ P     P        T + +  P   +PP     P   P P ++  P +PTP P P+
Sbjct: 2   PAAPTSPGTP---GVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTP-PRPA 57

Query: 588 PPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPP 623
                 +    +    +             V  PP 
Sbjct: 58  GDNATVAAGHATLREHLRDIKAENTDANFYVCPPPT 93

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 18/109 (16%), Positives = 27/109 (24%), Gaps = 18/109 (16%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
           + P++P  P    +T      P TPAP P   + P+                        
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPATPAP-PALGAAPTGDPKPKKNKK-------------- 47

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPS 476
              P  P+ P P                        +        PPP+
Sbjct: 48  ---PKNPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPT 93

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 8/92 (8%)

Query: 538 PVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPP 597
           P   + P TP ++      +  P +P P            ++PT  P P      ++P P
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAP--------PALGAAPTGDPKPKKNKKPKNPTP 53

Query: 598 TSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
             P     +      +    ++     +    
Sbjct: 54  PRPAGDNATVAAGHATLREHLRDIKAENTDAN 85

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 2/115 (1%)

Query: 468 PVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPP 527
           P     P +P  + ++         P+PP +   P     P P     P +P P      
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPT--GDPKPKKNKKPKNPTPPRPAGD 59

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTP 582
            +     +              +       PPP     V +  P R P       
Sbjct: 60  NATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 10/87 (11%), Positives = 17/87 (19%), Gaps = 3/87 (3%)

Query: 542 SPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
           + P +P               P     P P       +  P P  +  P   +PP  +  
Sbjct: 3   AAPTSPGTPGVAAATQAANGGPAT---PAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGD 59

Query: 602 PPVGSPPPPIQSPPPPVQSPPPPSPPP 628
               +                      
Sbjct: 60  NATVAAGHATLREHLRDIKAENTDANF 86

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 20/112 (17%), Positives = 29/112 (25%), Gaps = 7/112 (6%)

Query: 510 PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP 569
           P+   SP +P    +    +  P + P P      PT    P    +   P  P P    
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPAT-PAPPALGAAPTGDPKPKKNKKPKNPTPPRPA--G 58

Query: 570 PPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSP----PPPIQSPPPP 617
                    +                     PPP G+       P + P  P
Sbjct: 59  DNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRP 110

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 4/109 (3%)

Query: 493 PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPP 552
           P+ P               P  +P+ P    + P   P P     P   +PP     +  
Sbjct: 5   PTSPGTPGVAAATQAANGGP-ATPAPPAL-GAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62

Query: 553 PPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP--PPPIQSPPPTS 599
                         +      +     P P+ +       P + P    
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPE 111

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 19/125 (15%), Positives = 32/125 (25%), Gaps = 18/125 (14%)

Query: 388 EPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQE 447
            P +P       +  +      TP                   P   ++PT    P K +
Sbjct: 4   APTSPGTPGVAAATQAANGGPATPAP-----------------PALGAAPTGDPKPKKNK 46

Query: 448 PPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPP-VSYPPPVRS 506
            P     P P+                   + + ++       P P+    V +  P R 
Sbjct: 47  KPKNPTPPRPAGDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRC 106

Query: 507 PPPPS 511
           P  P 
Sbjct: 107 PTRPE 111

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 17/112 (15%), Positives = 26/112 (23%), Gaps = 11/112 (9%)

Query: 367 GSPPSTPSAP--TPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKV 424
           G+P    +       P+T  P      P   P       P   +P  P            
Sbjct: 9   GTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPA---------GD 59

Query: 425 PPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPS 476
              +             +  +         PPP+    V +  P R    P 
Sbjct: 60  NATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPE 111

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.4 bits (125), Expect = 9e-08
 Identities = 30/132 (22%), Positives = 41/132 (31%)

Query: 449 PPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPP 508
             +++ P P+ P  V+   P    PP +  P P      +  P+P P P    P V   P
Sbjct: 23  HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 82

Query: 509 PPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLY 568
            P P P P     V   P     PV   P           L+      +   P       
Sbjct: 83  KPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASG 142

Query: 569 PPPVRSPPPSSP 580
           P  +    P  P
Sbjct: 143 PRALSRNQPQYP 154

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 28/142 (19%), Positives = 37/142 (26%)

Query: 469 VRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPP 528
           V      S       P PAQ        P    PP    PPP P+  P   P     PP 
Sbjct: 14  VPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPK 73

Query: 529 SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP 588
             P V   P  +  P P P        +    P       P    +P   + + + + + 
Sbjct: 74  EAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATS 133

Query: 589 PPPIQSPPPTSPPPPVGSPPPP 610
            P                  P 
Sbjct: 134 KPVTSVASGPRALSRNQPQYPA 155

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 49.7 bits (118), Expect = 7e-07
 Identities = 30/128 (23%), Positives = 40/128 (31%)

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
           ++E P P+ P   TM    +  P     PP  P     P P     PP   P     P  
Sbjct: 25  VIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKP 84

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
           +  P+P P       P R   P    P+        +    S    +   PV S      
Sbjct: 85  KPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPR 144

Query: 548 SLSPPPPV 555
           +LS   P 
Sbjct: 145 ALSRNQPQ 152

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 28/135 (20%), Positives = 36/135 (26%), Gaps = 2/135 (1%)

Query: 467 PPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPP 526
             V   P P+   S +   PA   P  +  P   P     P P      P   P V   P
Sbjct: 23  HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 82

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
            P P P   P       P            SP   + P         +   +S   +   
Sbjct: 83  KPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPAR--LTSSTATAATSKPVTSVA 140

Query: 587 SPPPPIQSPPPTSPP 601
           S P  +    P  P 
Sbjct: 141 SGPRALSRNQPQYPA 155

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 23/120 (19%), Positives = 30/120 (25%)

Query: 510 PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP 569
            S +    S   V+       P       + +     P  +  PP +    P P P   P
Sbjct: 10  SSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIP 69

Query: 570 PPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
            P +  P     P P P P P         P   V        SP          S    
Sbjct: 70  EPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTAT 129

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 17/116 (14%), Positives = 31/116 (26%)

Query: 424 VPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSS 483
           V  +     +P         P  EP P  +  P             +  P P P P    
Sbjct: 37  VTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 96

Query: 484 PPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV 539
               +   +P     + P    +P   +   + ++     +     P  +S   P 
Sbjct: 97  QEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 152

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 29/129 (22%), Positives = 39/129 (30%)

Query: 369 PPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPII 428
               P+ P      +    EP      PP P +   P   P P   +   V   K  P  
Sbjct: 27  ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQ 488
              PKP            +P     + P  +  P        +A    P+ S +S P A 
Sbjct: 87  KPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRAL 146

Query: 489 STPQPSPPP 497
           S  QP  P 
Sbjct: 147 SRNQPQYPA 155

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 22/139 (15%), Positives = 32/139 (23%)

Query: 368 SPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPI 427
           S       P P    S     P    P       P P V     P           V   
Sbjct: 21  SVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIE 80

Query: 428 IVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPA 487
             +P     P P     +Q    +       + P  +  P   ++   +   S      A
Sbjct: 81  KPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVA 140

Query: 488 QSTPQPSPPPVSYPPPVRS 506
                 S     YP   ++
Sbjct: 141 SGPRALSRNQPQYPARAQA 159

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 25/149 (16%), Positives = 36/149 (24%), Gaps = 4/149 (2%)

Query: 393 APAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLV 452
                        + +P  P       P    PP  V+PP      P   P     PP  
Sbjct: 15  PRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE 74

Query: 453 QSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSP 512
                  P P   P P     P   +             +P+ P  +  P   +    + 
Sbjct: 75  APVVIEKPKPKPKPKP----KPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATA 130

Query: 513 MPSPSSPPPVYSPPPPSPPPVSYPPPVRS 541
             S         P   S     YP   ++
Sbjct: 131 ATSKPVTSVASGPRALSRNQPQYPARAQA 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 61/423 (14%), Positives = 118/423 (27%), Gaps = 135/423 (31%)

Query: 24  QYDLKDKTFESHRMKMAYVGLQAFKKAIYS----DPYNHTENWV---------------G 64
           Q  +  + +   R ++ Y   Q F K  Y+     PY      +               G
Sbjct: 104 QPSMMTRMYIEQRDRL-YNDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 65  T-------DVCQYNGVLC----DVF-------------IDNQERFVAMIDLN---KAEIA 97
           +       DVC    V C     +F             ++  ++ +  ID N   +++ +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 98  AHLPPEMGW----LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF----P 149
           +++   +      L  L+      N L  ++         L   +V N +    F     
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL--LV---------LL--NVQNAKAWNAFNLSCK 267

Query: 150 TVALTWKRNLYL-DLRFNNFEGELPPELFQTGLDI-----IFLNHNWFR---GSIPE--- 197
            +  T  R   + D         +  +     L       + L   +       +P    
Sbjct: 268 ILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVL 323

Query: 198 --------TIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILME-NQLSGCLPSEIGS 248
                    I ES+   +    +N+     + +   K L  II    N L    P+E   
Sbjct: 324 TTNPRRLSIIAESIRDGLATW-DNW-----KHVNCDK-LTTIIESSLNVLE---PAEY-R 372

Query: 249 GEYKNLTVFDIRSNKFHGSVP-QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTF 307
             +  L+VF   ++     +P    + +   +       ++       + +       T 
Sbjct: 373 KMFDRLSVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTI 426

Query: 308 SNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDECSWGG 367
           S           I      +Y E K     E    +   + Y       +  K   S   
Sbjct: 427 S-----------I----PSIYLELKVKLENEYALHRSIVDHY-------NIPKTFDSDDL 464

Query: 368 SPP 370
            PP
Sbjct: 465 IPP 467

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 43/351 (12%), Positives = 96/351 (27%), Gaps = 90/351 (25%)

Query: 57  NHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHAN 116
           +H  + +  +  ++     D+    ++ FV   D         +      +L        
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCK------DVQDMPKSIL-------- 46

Query: 117 TNRLCGII---PETFANMHRLEEFDV---SNNRLVGPFPTVAL----TWKRNLYLDLRFN 166
           +      I    +  +   RL  F         +V  F    L     +   L   ++  
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIKTE 101

Query: 167 NFEGELPPELFQTGLDI------IFLNHNWFRGSIPETIGESL-----ARYI-------- 207
             +  +   ++    D       +F  +N  R      + ++L     A+ +        
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 208 --------VLSSNNFTGCLPR-----SIGYMKELQEIILMENQL------SGCLPSEIGS 248
                   V  S      +       ++      + ++ M  +L      +    S+  S
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 249 GEYKNLTVFDIRSNKFHGSVPQSFAN--LNNIMRLDISD-NMLTGFVSADI-CKLPHLLN 304
                +        +   S  + + N  L  ++  ++ +      F   ++ CK+  LL 
Sbjct: 222 NIKLRIHSIQAELRRLLKS--KPYENCLL--VLL-NVQNAKAWNAF---NLSCKI--LLT 271

Query: 305 FTFSN--NFFQGMAMECISGSRDDVYFEEK------GNCLAEMEYQKLPTE 347
             F    +F        IS     +              L +   Q LP E
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPRE 321

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 52.6 bits (124), Expect = 3e-07
 Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 1/90 (1%)

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPP-PPIQSPPPTS 599
           +S      +S  P V                +     +   P  +   P PP++   PT 
Sbjct: 403 TSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTK 462

Query: 600 PPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           P      P  P    P   + P PP+    
Sbjct: 463 PTYETEKPLKPAPVAPNYEKEPTPPTRLEH 492

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 52.2 bits (123), Expect = 3e-07
 Identities = 20/142 (14%), Positives = 37/142 (26%), Gaps = 1/142 (0%)

Query: 394 PAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQ 453
                 S  +    S     W+ +  P        ++   P++             P+  
Sbjct: 354 KQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSD 413

Query: 454 SPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPM 513
            P            P         + + + P   +  P P   P +   P      P   
Sbjct: 414 MPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLK- 472

Query: 514 PSPSSPPPVYSPPPPSPPPVSY 535
           P+P +P     P PP+     +
Sbjct: 473 PAPVAPNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 49.9 bits (117), Expect = 2e-06
 Identities = 14/91 (15%), Positives = 22/91 (24%)

Query: 514 PSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVR 573
            + +  P    P  P         P           +   P  +   P+PP     P   
Sbjct: 404 SATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKP 463

Query: 574 SPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV 604
           +     P      +P    +  PPT      
Sbjct: 464 TYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 48.7 bits (114), Expect = 4e-06
 Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 509 PPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLY 568
           P + +   ++      P    P              P    S    +++   P       
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNT--DGKKPNIWYSLNGKIRAVNVPKVTKEKP 451

Query: 569 PPPVRSPPPSSPT-PSPSPSPPPPIQSPPPTSPPPPV 604
            PPV+   P+ PT  +  P  P P+       P PP 
Sbjct: 452 TPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPT 488

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 48.4 bits (113), Expect = 5e-06
 Identities = 26/162 (16%), Positives = 36/162 (22%), Gaps = 5/162 (3%)

Query: 320 ISGSRDDVYFEEKGNCLAEMEYQKLPTECYPVVSKPVDCSKDECSWGGSPPSTPSAPTPK 379
           I      +Y  +  N        +             D S    SW G+     S P   
Sbjct: 338 IGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNY 397

Query: 380 PSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTP 439
            +    +     P    P                +  N   R    P          PTP
Sbjct: 398 VTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVP----KVTKEKPTP 453

Query: 440 TTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSP 481
              P     P   ++  P  P PV+        PP       
Sbjct: 454 PVKPTAPTKPT-YETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 48.0 bits (112), Expect = 8e-06
 Identities = 16/105 (15%), Positives = 24/105 (22%)

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV 539
             S P    +    S   V     +   P                        V      
Sbjct: 390 KMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKE 449

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP 584
           + +PP  P+    P  ++  P  P PV         PP+      
Sbjct: 450 KPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 47.2 bits (110), Expect = 1e-05
 Identities = 16/84 (19%), Positives = 22/84 (26%), Gaps = 1/84 (1%)

Query: 536 PPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
                S  P  P        +     S    +    V       PTP   P+ P    + 
Sbjct: 407 NVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKP-TY 465

Query: 596 PPTSPPPPVGSPPPPIQSPPPPVQ 619
               P  P    P   + P PP +
Sbjct: 466 ETEKPLKPAPVAPNYEKEPTPPTR 489

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.4 bits (108), Expect = 2e-05
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 3/114 (2%)

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV 539
           +P+S   A +     P          +         P  P    +         S    +
Sbjct: 379 APNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKI 438

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQ 593
           R+   P  +   P P   P  P+ P      P+    P+   P+    P PP +
Sbjct: 439 RAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPL---KPAPVAPNYEKEPTPPTR 489

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 45.7 bits (106), Expect = 3e-05
 Identities = 14/89 (15%), Positives = 19/89 (21%)

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
           S P    ++         P    P V          P+             +       P
Sbjct: 392 SGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKP 451

Query: 601 PPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
            PPV    P   +        P P  P  
Sbjct: 452 TPPVKPTAPTKPTYETEKPLKPAPVAPNY 480

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 45.3 bits (105), Expect = 5e-05
 Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 8/112 (7%)

Query: 457 PSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSP 516
            S P          +         P  P    +  +      S    +R+   P      
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEK 450

Query: 517 SSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLY 568
            +PP    P  P+ P      P+     P P    P   + P PP+     +
Sbjct: 451 PTPPVK--PTAPTKPTYETEKPL----KPAPV--APNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 44.5 bits (103), Expect = 8e-05
 Identities = 17/88 (19%), Positives = 22/88 (25%), Gaps = 2/88 (2%)

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
                S  P  P    +           +    +   P  +   PTP + P  P    P 
Sbjct: 407 NVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPT--KPT 464

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSP 588
                 L P PV       PTP      
Sbjct: 465 YETEKPLKPAPVAPNYEKEPTPPTRLEH 492

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 22/137 (16%), Positives = 37/137 (27%), Gaps = 3/137 (2%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
           EP K      + +   +      Q P               +      +  PS      +
Sbjct: 21  EPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGA 80

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSL 549
             Q +P    +P  + SP       +P          P  P  +    P  S+     + 
Sbjct: 81  PGQDTPGVSLHPLSLDSPDREPGADAPLELG---DSSPQGPMSLESLAPPESTDEGAETE 137

Query: 550 SPPPPVQSPPPPSPPPV 566
           SP P  +  P  S   +
Sbjct: 138 SPEPGDEGEPGRSGLEL 154

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 25/159 (15%), Positives = 34/159 (21%), Gaps = 11/159 (6%)

Query: 467 PPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPP 526
           P        S + +          P                        P +        
Sbjct: 22  PAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDA-----------EKPGATDRKGGVG 70

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
            PS       P   +       LS   P + P   +P  +    P       S  P  S 
Sbjct: 71  MPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPEST 130

Query: 587 SPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPS 625
                 +SP P     P  S        PP  +   PP 
Sbjct: 131 DEGAETESPEPGDEGEPGRSGLELEPEEPPGWRELVPPD 169

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 29/155 (18%), Positives = 34/155 (21%), Gaps = 15/155 (9%)

Query: 479 PSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPP 538
              S  P        S              P  P             P  +        P
Sbjct: 16  NRRSDEPAKTKKGLSSILD---AARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMP 72

Query: 539 VRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPP-----IQ 593
            R      P        Q  P  S  P+    P R P   +P      SP  P     + 
Sbjct: 73  SRDRNIGAPG-------QDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLA 125

Query: 594 SPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
            P  T       SP P  +  P        P  PP
Sbjct: 126 PPESTDEGAETESPEPGDEGEPGRSGLELEPEEPP 160

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 20/155 (12%), Positives = 29/155 (18%), Gaps = 12/155 (7%)

Query: 445 KQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPV 504
           + + P   +    S      +        P  P             P  +        P 
Sbjct: 18  RSDEPAKTKKGLSSILDAARWNRG----EPQVPDFRHLKAEVDAEKPGATDRKGGVGMPS 73

Query: 505 RSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPP-VQSPPPPSP 563
           R            +P          P  +  P     +  P       P    S    +P
Sbjct: 74  RDRN-------IGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAP 126

Query: 564 PPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPT 598
           P           P       P  S        PP 
Sbjct: 127 PESTDEGAETESPEPGDEGEPGRSGLELEPEEPPG 161

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 41.2 bits (96), Expect = 9e-04
 Identities = 28/165 (16%), Positives = 39/165 (23%), Gaps = 20/165 (12%)

Query: 366 GGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVP 425
           G      P+      S+   A       P  P        V +  P              
Sbjct: 15  GNRRSDEPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGA------------ 62

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
                  K     P+       P    Q  P  S  P+S   P R     +P+    S P
Sbjct: 63  ----TDRKGGVGMPSRDRNIGAPG---QDTPGVSLHPLSLDSPDREPGADAPLELGDSSP 115

Query: 486 PAQSTPQ-PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPS 529
               + +  +PP  +        P P     P        P  P 
Sbjct: 116 QGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEPP 160

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 14/98 (14%), Positives = 22/98 (22%), Gaps = 2/98 (2%)

Query: 532 PVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPP 591
           P  Y   ++   PP P  S   P  +P   +              P++P  SP  S    
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAP--SPGSSGGGG 76

Query: 592 IQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
             S    +      +                       
Sbjct: 77  FFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 51.4 bits (122), Expect = 5e-07
 Identities = 16/109 (14%), Positives = 26/109 (23%)

Query: 472 APPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPP 531
               + +  P  PPP  S   P   P S           +P+ SP++P P  S       
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79

Query: 532 PVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSP 580
            +S      ++                             +  P     
Sbjct: 80  SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 50.6 bits (120), Expect = 9e-07
 Identities = 12/102 (11%), Positives = 23/102 (22%), Gaps = 1/102 (0%)

Query: 510 PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP 569
            + +P+          PPP PP  + P     S   +   +      +  P +P P    
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVA-SPAAPSPGSSG 73

Query: 570 PPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPI 611
                   S+     + +                        
Sbjct: 74  GGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 13/94 (13%), Positives = 21/94 (22%)

Query: 508 PPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVL 567
              + +  P  PPP  S   P   P S       +    P  SP  P             
Sbjct: 21  GYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSS 80

Query: 568 YPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
               V+    ++              +    +  
Sbjct: 81  LSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 15/115 (13%), Positives = 29/115 (25%), Gaps = 2/115 (1%)

Query: 435 SSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPS 494
            S     +P           PPP  P   S      SA   +   S ++P  + + P P 
Sbjct: 11  DSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPG 70

Query: 495 PPPV--SYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
                  +     +    +   + +    V      +    +    +     P  
Sbjct: 71  SSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHT 125

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 15/99 (15%), Positives = 21/99 (21%), Gaps = 3/99 (3%)

Query: 497 PVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQ 556
           P  Y   ++ P PP P PS +SP      P  +               P           
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGA---TPGSAAASAERASTAAPVASPAAPSPGSSGGG 75

Query: 557 SPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
                    V       +   S      S        + 
Sbjct: 76  GFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 14/103 (13%), Positives = 23/103 (22%), Gaps = 3/103 (2%)

Query: 457 PSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSP 516
            ++ P        R  PPP P  + S      S    +              P +P P  
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERA---STAAPVASPAAPSPGS 71

Query: 517 SSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPP 559
           S     +S    +    +       S              +  
Sbjct: 72  SGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 15/121 (12%), Positives = 29/121 (23%), Gaps = 2/121 (1%)

Query: 482 SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRS 541
           S      + P      +  P P   PPPPS     ++P    +    +        P   
Sbjct: 10  SDSNFMANLPNGYMTDLQRPQP--PPPPPSAASPGATPGSAAASAERASTAAPVASPAAP 67

Query: 542 SPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
           SP  +        + +    +          +    S        +    +    P +  
Sbjct: 68  SPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDW 127

Query: 602 P 602
            
Sbjct: 128 A 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 18/118 (15%), Positives = 28/118 (23%), Gaps = 4/118 (3%)

Query: 458 SSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPS 517
            +  P  Y   ++   PP P PS +SP         S    +      +P      PSP 
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGA----TPGSAAASAERASTAAPVASPAAPSPG 70

Query: 518 SPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP 575
           S          S           ++             +         V+  P     
Sbjct: 71  SSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 13/95 (13%), Positives = 24/95 (25%)

Query: 509 PPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLY 568
           P   M     P P   PP  + P  +      S+   + +     P    P  S     +
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 569 PPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPP 603
                +   ++   + + S      S         
Sbjct: 79  SSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAA 113

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 11/105 (10%), Positives = 21/105 (20%), Gaps = 4/105 (3%)

Query: 475 PSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
            + +P+       +  P P PP            P S   S            P+ P   
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPS----AASPGATPGSAAASAERASTAAPVASPAAPSPG 70

Query: 535 YPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSS 579
                      + ++       +               R    + 
Sbjct: 71  SSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 17/113 (15%), Positives = 24/113 (21%), Gaps = 1/113 (0%)

Query: 456 PPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPS 515
           P      +  P P    PP +  P  +    A S  + S       P   SP        
Sbjct: 19  PNGYMTDLQRPQPP-PPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGF 77

Query: 516 PSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLY 568
            SS          +            S       +    +     P      Y
Sbjct: 78  FSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKY 130

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 13/109 (11%), Positives = 21/109 (19%), Gaps = 8/109 (7%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSP----- 484
                    P   PP         +P  ++            A P +P P  S       
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79

Query: 485 ---PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSP 530
                 + T   +    S      S        +      +  P     
Sbjct: 80  SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWA 128

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 18/105 (17%), Positives = 25/105 (23%), Gaps = 8/105 (7%)

Query: 481 PSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
           P+        PQP PPP    P   SP       + S+               + P P  
Sbjct: 19  PNGYMTDLQRPQPPPPP----PSAASPGATPGSAAASAERA---STAAPVASPAAPSPGS 71

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPS 585
           S      S S    V+     +           S        +  
Sbjct: 72  SGGGGFFS-SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 13/105 (12%), Positives = 20/105 (19%), Gaps = 6/105 (5%)

Query: 430 EPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQS 489
             P           P   PP                      A   +P+ SP++P P  S
Sbjct: 17  NLPNGYMTDLQRPQPPPPPPSAASPGATPGSA----AASAERASTAAPVASPAAPSPGSS 72

Query: 490 TPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
                   +S    V+     +                       
Sbjct: 73  GGGGFFSSLS--NAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 2/71 (2%)

Query: 556 QSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPP 615
            +  P      L  P    PPPS+ +P  +P           T+ P    SP  P     
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVA--SPAAPSPGSS 72

Query: 616 PPVQSPPPPSP 626
                    S 
Sbjct: 73  GGGGFFSSLSN 83

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.4 bits (96), Expect = 7e-04
 Identities = 9/51 (17%), Positives = 16/51 (31%)

Query: 578 SSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPP 628
            +  P+   +     Q PPP       G+ P    +      +  P + P 
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPA 65

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 11/145 (7%), Positives = 22/145 (15%), Gaps = 22/145 (15%)

Query: 507 PPPPSPMPSPSSPPPVYS---------PP--PPS-----------PPPVSYPPPVRSSPP 544
              P   P   +               P     +              V         P 
Sbjct: 282 DGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQDTGVPRPG 341

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV 604
            +   SP               +Y          +     +    P +      +     
Sbjct: 342 LSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDVAASVLQA 401

Query: 605 GSPPPPIQSPPPPVQSPPPPSPPPP 629
                P+Q+      +         
Sbjct: 402 TVLSQPVQTLDSLRAARHGALDADG 426

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 17/159 (10%), Positives = 28/159 (17%), Gaps = 15/159 (9%)

Query: 443 PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSS---------------PPPA 487
                    +    P      SY   +R A  P P    ++                   
Sbjct: 275 TRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQD 334

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
              P+P    +  P             +             +   +     V    P   
Sbjct: 335 TGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVPLVDPTDV 394

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSP 586
           + S         P      L      +        S S 
Sbjct: 395 AASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 16/166 (9%), Positives = 30/166 (18%), Gaps = 29/166 (17%)

Query: 484 PPPAQSTPQPSPPPVSYPPPVRSPPP----------PSPMPSPSS-----------PPPV 522
           P          P      P +++             P P    ++              V
Sbjct: 274 PTRNGRYVDGLPED---DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREV 330

Query: 523 YSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTP 582
            +     P P         SP  +          +                    +   P
Sbjct: 331 VAQDTGVPRP---GLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVP 387

Query: 583 SPSPSPP--PPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
              P+      +Q+   + P   + S                  S 
Sbjct: 388 LVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESV 433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 9/114 (7%), Positives = 14/114 (12%), Gaps = 27/114 (23%)

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPV---------------------------LYPPPVRSP 575
           P          P   P   +                                    V + 
Sbjct: 274 PTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREVVAQ 333

Query: 576 PPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
               P P  S    P   +                         +    +   P
Sbjct: 334 DTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVP 387

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 468 PVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPP 527
                       + +  P  +S+        +    + +          + PP  Y+PPP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPP---PPSPPP 565
              PP  YPP         P   PPPP  +PP   PP+ PP
Sbjct: 398 QGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 22/104 (21%), Positives = 28/104 (26%)

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
               +         +           P +                    + PP   +PPP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV 604
              PP  YPP    P    P   P P    P Q  PP +PP  V
Sbjct: 398 QGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGV 441

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 20/108 (18%), Positives = 27/108 (25%)

Query: 510 PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP 569
           P  +               +   +       ++P    +                    P
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP 390

Query: 570 PPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPP 617
                PP   P     P   PP   PP   PPPP G+PP       PP
Sbjct: 391 QGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 23/108 (21%), Positives = 29/108 (26%), Gaps = 1/108 (0%)

Query: 477 PMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYP 536
           P          + T          P    S   PS   +                    P
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY-P 389

Query: 537 PPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP 584
           P   + PP        PP   PP   PP    PPP  +PP  +P  +P
Sbjct: 390 PQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP 437

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 34/118 (28%), Gaps = 2/118 (1%)

Query: 440 TTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVS 499
            T P                    +  P   S+       +           +      +
Sbjct: 328 QTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAA 387

Query: 500 YPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQS 557
           YPP   +PPP      P   PP   PP   PP    PPP  + P   P  +PP  V +
Sbjct: 388 YPPQGYAPPPQGY--PPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDN 443

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 24/99 (24%), Positives = 30/99 (30%), Gaps = 7/99 (7%)

Query: 536 PPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSP 595
                        +       + P      +     +           P     PP Q  
Sbjct: 341 DKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGY 400

Query: 596 PPTSPPPPVGSPP---PPIQSPPPPVQSPP---PPSPPP 628
           PP   PP  G PP   PP   PPPP  +PP   PP+ PP
Sbjct: 401 PPQGYPPQ-GYPPQGYPPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 26/124 (20%), Positives = 35/124 (28%), Gaps = 12/124 (9%)

Query: 421 RHKVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPS 480
               P ++         T      + E P    S    S         + +         
Sbjct: 327 SQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMM-AMMQKMQQQQ 385

Query: 481 PSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
            + PP   + P    PP           PP   P    PP  Y PPP   PP   PP   
Sbjct: 386 AAYPPQGYAPPPQGYPPQG--------YPPQGYPPQGYPPQGYPPPPQGAPPQGAPP--- 434

Query: 541 SSPP 544
           ++PP
Sbjct: 435 AAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 21/103 (20%), Positives = 28/103 (27%), Gaps = 7/103 (6%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSP--PPVY 523
                +           +   + + P      +     +           P     PP  
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398

Query: 524 SPPPPSPPPVSYPPPVRSSPPPTPSLSPPP--PVQSPPPPSPP 564
             PP   PP  YPP      PP     PP   P Q  PP +PP
Sbjct: 399 GYPPQGYPPQGYPPQGY---PPQGYPPPPQGAPPQGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 387 QEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSPTPTTMPPKQ 446
            + K         +      +S   P+ +  ++         ++  + + P     PP Q
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQ 398

Query: 447 EPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMP---SPSSPPPA 487
             PP  Q  PP   PP  YPP     PP    P    P++PP  
Sbjct: 399 GYPP--QGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQG 440

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 26/119 (21%), Positives = 35/119 (29%), Gaps = 11/119 (9%)

Query: 378 PKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPPKPSSP 437
           P   T     + +T         +P+   +   P            +   + +      P
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP 390

Query: 438 TPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPP 496
                PP        Q  PP   PP  YPP     PP    P P   PP Q  P  +PP
Sbjct: 391 QGYAPPP--------QGYPPQGYPPQGYPPQGY--PPQGYPPPPQGAPP-QGAPPAAPP 438

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 23/103 (22%), Positives = 27/103 (26%), Gaps = 6/103 (5%)

Query: 528 PSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPS 587
           P            +          P    S   PS         ++             +
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAA----QMKEMMAMMQKMQQQQA 386

Query: 588 PPPPIQSPPPTSPPPPVGSPP--PPIQSPPPPVQSPPPPSPPP 628
             PP    PP    PP G PP   P Q  PP    PPP   PP
Sbjct: 387 AYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPP 429

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 37/234 (15%), Positives = 69/234 (29%), Gaps = 68/234 (29%)

Query: 108 LDLIYFHANTNRL----CGIIPETFANMHR-LEEFDVSNNRLVGPFPTVAL-----TWKR 157
           LDL +     N           + F+N+   +   ++  N L G   +  L         
Sbjct: 114 LDLGW-----NDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPA 167

Query: 158 NL-YLDLRFNNF--EG---------ELPPELFQTGLDIIFLNHNWFRGSIPETIGESLAR 205
           N+  L+LR NN   +           +P  +  T LD   L+ N         +G     
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASV--TSLD---LSAN--------LLGLKSYA 214

Query: 206 YI--VLSSNNFTGCLPRSIGYMKELQEIILMENQL--SGCLPSEIGSGEYKN--LTVFDI 259
            +  + SS                +  + L  N L         +   +     L    +
Sbjct: 215 ELAYIFSSIPNH------------VVSLNLCLNCLHGPSL--ENLKLLKDSLKHLQTVYL 260

Query: 260 RSNKFHG-------SVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFT 306
             +           ++  +F N+  I+ +D +   +    S  I  L   L+  
Sbjct: 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGK 314

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 5/152 (3%)

Query: 442 MPPKQEPPPLVQSPPPSSPP---PVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPV 498
              K +   +  +PP +      P    PP       S +    +   +    + +PPP+
Sbjct: 291 TILKYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPI 350

Query: 499 SYPPPVRSPPPPSPMPSPSSPPPVY--SPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQ 556
           +    +     P    +  S  PV   S         S  P V SS    P  +  P   
Sbjct: 351 ASVGTLAKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPSRT 410

Query: 557 SPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP 588
                SP         +   P +       S 
Sbjct: 411 RATDASPGAFRRTSGPQKSSPVNSAEPKHSSS 442

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 24/155 (15%), Positives = 32/155 (20%), Gaps = 6/155 (3%)

Query: 477 PMPSPSSPPPAQSTPQPSPPPVSYPPPV-----RSPPPPSPMPSPSSPPPVYSPPPPSPP 531
                               P    PP      +S          SS     +PPP +  
Sbjct: 294 KYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASV 353

Query: 532 PVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPP 591
                         + S  P     +    S       P V S     P  +  PS    
Sbjct: 354 GTLAKQKAPVGNDASFSKEPVISASNFLGRSSGSS-RRPAVSSSRDVMPIDTSEPSRTRA 412

Query: 592 IQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSP 626
             + P             P+ S  P   S    S 
Sbjct: 413 TDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSS 447

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 42/206 (20%), Positives = 71/206 (34%), Gaps = 46/206 (22%)

Query: 116 NTNRLCGIIPETFANMHRLEEFDVSNNRL----VGPF-PTVALTWKRNLYLDLRFNNFEG 170
            +N+L  +  + F  + +L    +++N+L     G F     L       L +  N  + 
Sbjct: 45  QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE-----TLWVTDNKLQ- 98

Query: 171 ELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRSI-GYM 225
            LP  +F     L  + L+ N  + S+P  + +SL    Y+ L  N     LP+ +   +
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL 156

Query: 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS-FANLNNIMRLDIS 284
             L+E+ L  NQL                             VP+  F  L  +  L + 
Sbjct: 157 TSLKELRLYNNQLK---------------------------RVPEGAFDKLTELKTLKLD 189

Query: 285 DNMLTGFVSADICKLPHLLNFTFSNN 310
           +N L          L  L       N
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 30/183 (16%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRF 165
           L  L   + N N+L  +    F  +  LE   V++N+L    P        NL  L L  
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDR 118

Query: 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIG 223
           N  +  LPP +F   T L  + L +N  + S+P+ +              F         
Sbjct: 119 NQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV--------------FDK------- 155

Query: 224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDI 283
            +  L+E+ L  NQL   +P          L    + +N+       +F +L  +  L +
Sbjct: 156 -LTSLKELRLYNNQLKR-VPEGAFDK-LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 284 SDN 286
            +N
Sbjct: 213 QEN 215

>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1 Length = 511

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 40/279 (14%), Positives = 61/279 (21%), Gaps = 20/279 (7%)

Query: 365 WGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSP----PVASPTPPTWEWNRVP 420
           +G +    PS          P          PP     SP     V S   P      + 
Sbjct: 15  YGDTMVVWPSTGRIPGGDVKPGGSSGLAPSMPPGWGDYSPQGIALVQSVLFPGIIRRIIL 74

Query: 421 RHKVPPIIVEPPKPSSPTPTTMPPKQ------EPPPLVQSPPPSSPPPVSYPPPVRSAPP 474
             ++          S  +P             E       P PS P  VS+     ++  
Sbjct: 75  DKELEEGDWSGWSVSVHSPWGNEKVSAARTVLENGLRGGLPEPSRPAAVSFARLEPASGN 134

Query: 475 PSPMPSPSSPPPAQ---STPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSP- 530
              +         +     P    P      PV+                +   P   P 
Sbjct: 135 EQKIIRLMVTQQLEQVTDIPASQLPAAGNNVPVKYRLTDLMQNGTQYMAIIGGIPMTVPV 194

Query: 531 ------PPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSP 584
                 P  S P          P     P +         PV   P ++     S T + 
Sbjct: 195 VDAVPVPDRSRPGTNIKDVYSAPVSPNLPDLVLSVGQMNTPVRSNPEIQEDGVISETGNY 254

Query: 585 SPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPP 623
             +      +        P GS   P+      +     
Sbjct: 255 VEAGYTMSSNNHDVIVRFPEGSGVSPLYISAVEILDSNS 293

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 14/86 (16%), Positives = 20/86 (23%), Gaps = 8/86 (9%)

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTS 599
           + +     SL P   V      + P         S  PS P  +     P    +P    
Sbjct: 8   KDASQRRRSLEPAENVHGAGGGAFPA--------SQTPSKPASADGHRGPSAAFAPAAAE 59

Query: 600 PPPPVGSPPPPIQSPPPPVQSPPPPS 625
           P    G       + P          
Sbjct: 60  PKLFGGFNSSDTVTSPQRAGPLAGGV 85

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 13/80 (16%), Positives = 18/80 (22%), Gaps = 2/80 (2%)

Query: 524 SPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPS 583
            P   S    S  P          +   P       P S      P    +P  + P   
Sbjct: 6   KPKDASQRRRSLEPAENVHGAGGGA--FPASQTPSKPASADGHRGPSAAFAPAAAEPKLF 63

Query: 584 PSPSPPPPIQSPPPTSPPPP 603
              +    + SP    P   
Sbjct: 64  GGFNSSDTVTSPQRAGPLAG 83

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 12/81 (14%), Positives = 23/81 (28%)

Query: 482 SSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRS 541
           S P  A    +   P  +         P S  PS  +    +  P  +  P +  P +  
Sbjct: 5   SKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFG 64

Query: 542 SPPPTPSLSPPPPVQSPPPPS 562
               + +++ P          
Sbjct: 65  GFNSSDTVTSPQRAGPLAGGV 85

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 12/80 (15%), Positives = 18/80 (22%), Gaps = 2/80 (2%)

Query: 550 SPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPP 609
            P    Q      P   ++     + P S     P+ +      S      P        
Sbjct: 6   KPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAF--APAAAEPKLF 63

Query: 610 PIQSPPPPVQSPPPPSPPPP 629
              +    V SP    P   
Sbjct: 64  GGFNSSDTVTSPQRAGPLAG 83

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 8/82 (9%), Positives = 16/82 (19%), Gaps = 1/82 (1%)

Query: 476 SPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSY 535
            P  +       +             P  ++P  P+       P   ++P    P     
Sbjct: 6   KPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGG 65

Query: 536 PPPVRSSPPPTP-SLSPPPPVQ 556
                +   P            
Sbjct: 66  FNSSDTVTSPQRAGPLAGGVTT 87

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 10/73 (13%), Positives = 18/73 (24%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
               R +  P+     +      ++  PS P  +      S         P       S 
Sbjct: 10  ASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFNSS 69

Query: 526 PPPSPPPVSYPPP 538
              + P  + P  
Sbjct: 70  DTVTSPQRAGPLA 82

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 9/82 (10%), Positives = 19/82 (23%)

Query: 517 SSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPP 576
           S P           P  +       + P + + S P        PS          +   
Sbjct: 5   SKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFG 64

Query: 577 PSSPTPSPSPSPPPPIQSPPPT 598
             + + + +        +   T
Sbjct: 65  GFNSSDTVTSPQRAGPLAGGVT 86

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 3/85 (3%)

Query: 445 KQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPV 504
           K +P    Q      P    +     + P      +PS P  A     PS          
Sbjct: 4   KSKPKDASQRRRSLEPAENVHGAGGGAFPA---SQTPSKPASADGHRGPSAAFAPAAAEP 60

Query: 505 RSPPPPSPMPSPSSPPPVYSPPPPS 529
           +     +   + +SP          
Sbjct: 61  KLFGGFNSSDTVTSPQRAGPLAGGV 85

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 37/162 (22%)

Query: 153 LTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSS 211
            T    + L       E ++   L        + L+ N    +I E I  SL+       
Sbjct: 22  ATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTN----NI-EKI-SSLSG------ 68

Query: 212 NNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE--YKNLTVFDIRSNKFHGSVP 269
                        M+ L+ + L  N +      +I + +     L    I  N+   +  
Sbjct: 69  -------------MENLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQI--ASL 108

Query: 270 QSFANLNNIMRLDISDNMLTGFVSADICK-LPHLLNFTFSNN 310
                L N+  L +S+N +T +   D    L  L +   + N
Sbjct: 109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 17/186 (9%), Positives = 35/186 (18%), Gaps = 9/186 (4%)

Query: 444 PKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPP 503
           P++           S+    S     +     +    P++  P  S  +       Y   
Sbjct: 5   PRKTKGKSSGKGNDSTER--SDDGSSQLRDKQNNKAGPATTEPGTSNRE------QYRAR 56

Query: 504 VRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSP 563
                      S   P        P     +    V                Q+      
Sbjct: 57  PGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKS 116

Query: 564 PPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPP 623
              +          +  + S +          P ++      +     + P      P  
Sbjct: 117 KAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEA-TSAIVSKHPARVGLPPTA 175

Query: 624 PSPPPP 629
            S    
Sbjct: 176 SSGHGY 181

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 13/151 (8%), Positives = 29/151 (19%), Gaps = 4/151 (2%)

Query: 429 VEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYP--PPVRSAPPPSPMPSPSSPPP 486
            +     +   TT P           P  +S    +     P+++    +P    ++   
Sbjct: 31  RDKQNNKAGPATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGD 90

Query: 487 AQSTPQPSPPPVSYPP--PVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP 544
             +    +            +         + S      +        V         P 
Sbjct: 91  LVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPM 150

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP 575
            T        + S  P               
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGY 181

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 19/187 (10%), Positives = 34/187 (18%), Gaps = 10/187 (5%)

Query: 373 PSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKVPPIIVEPP 432
              P      S+      T      +  L         P T E     R +         
Sbjct: 2   KRIPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIAS 61

Query: 433 KPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQ 492
              +     +P K            +    V+                  +    Q   +
Sbjct: 62  VQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEA----------KDEADEATQKQAK 111

Query: 493 PSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPP 552
            +    +      +    +   S S            P          +     P+    
Sbjct: 112 DTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGL 171

Query: 553 PPVQSPP 559
           PP  S  
Sbjct: 172 PPTASSG 178

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 17/179 (9%), Positives = 31/179 (17%), Gaps = 7/179 (3%)

Query: 423 KVPPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPS 482
           K  P   +         +T         L       + P  + P         +     S
Sbjct: 2   KRIPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIAS 61

Query: 483 SPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSS 542
                +S       P+            +      +                     +S 
Sbjct: 62  VQRATESAE----LPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSK 117

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
              T S +                       +  P S   + + S            PP
Sbjct: 118 AQVTYSDTGINNANELSRSGNVD---NEGGSNQKPMSTRIAEATSAIVSKHPARVGLPP 173

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 161 LDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTG 216
           + L  N  +  +PP  F     L  I L++N     +     + L     +VL  N  T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 217 CLPRSI-GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL 275
            LP+S+   +  LQ ++L  N+++ CL  +       NL +  +  NK       +F+ L
Sbjct: 95  -LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQD-LHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 276 NNIMRLDISDN 286
             I  + ++ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 16/130 (12%)

Query: 116 NTNRLCGIIPETFANMHRLEEFDVSNNRL----VGPF-PTVALTWKRNLYLDLRFNNFEG 170
             N +  I P  F+   +L   D+SNN++       F    +L       L L  N    
Sbjct: 40  EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN-----SLVLYGNKIT- 93

Query: 171 ELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRSIGYMK 226
           ELP  LF+    L ++ LN N     +     + L     + L  N        +   ++
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 227 ELQEIILMEN 236
            +Q + L +N
Sbjct: 153 AIQTMHLAQN 162

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 12/75 (16%), Positives = 15/75 (20%), Gaps = 3/75 (4%)

Query: 541 SSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
           SS       S   P  S  P       Y  P         + +P    P P         
Sbjct: 3   SSQHHHHHSSGLVPRGSHMPQGGG---YAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQG 59

Query: 601 PPPVGSPPPPIQSPP 615
                     +Q   
Sbjct: 60  GYGSAGTSVTLQLDD 74

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 10/75 (13%), Positives = 13/75 (17%), Gaps = 3/75 (4%)

Query: 534 SYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQ 593
           S       S    P  S  P       P+     Y        P    P+P         
Sbjct: 3   SSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQS---GAPDYGQPAPGGYSGYGQG 59

Query: 594 SPPPTSPPPPVGSPP 608
                     +    
Sbjct: 60  GYGSAGTSVTLQLDD 74

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 8/73 (10%), Positives = 9/73 (12%), Gaps = 1/73 (1%)

Query: 499 SYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSP 558
           S            P  S       Y+ P                  P P           
Sbjct: 3   SSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYG-QSGAPDYGQPAPGGYSGYGQGGY 61

Query: 559 PPPSPPPVLYPPP 571
                   L    
Sbjct: 62  GSAGTSVTLQLDD 74

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 10/57 (17%), Positives = 11/57 (19%)

Query: 573 RSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
                S   P  S  P     + P         S  P    P P   S         
Sbjct: 7   HHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGS 63

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 6/63 (9%), Positives = 7/63 (11%)

Query: 476 SPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSY 535
           S                  P    Y  P           +P    P              
Sbjct: 3   SSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYG 62

Query: 536 PPP 538
              
Sbjct: 63  SAG 65

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 10/70 (14%), Positives = 13/70 (18%)

Query: 476 SPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSY 535
                 SS    + +  P     + P         S  P    P P            S 
Sbjct: 5   QHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSA 64

Query: 536 PPPVRSSPPP 545
              V      
Sbjct: 65  GTSVTLQLDD 74

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 6/74 (8%), Positives = 10/74 (13%)

Query: 549 LSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPP 608
           +              P   + P        +           P    P        G   
Sbjct: 1   MGSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60

Query: 609 PPIQSPPPPVQSPP 622
                    +Q   
Sbjct: 61  YGSAGTSVTLQLDD 74

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 4/56 (7%), Positives = 5/56 (8%)

Query: 574 SPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPPPP 629
           S      +  P                         P              S    
Sbjct: 12  SGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTS 67

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 33/219 (15%)

Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL----VGPF-PTVALTWKRNLYLD 162
           LDL     + N L  +   +F +   L+  D+S   +     G +     L+      L 
Sbjct: 33  LDL-----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS-----TLI 82

Query: 163 LRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCL 218
           L  N  +  L    F   + L  +         S+       L   + + ++ N      
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SF 139

Query: 219 PRSIGY---MKELQEIILMENQLSGCLPSEIGSGEYKNLTVF----DIRSNKFHGSVPQS 271
                Y   +  L+ + L  N++   +           + +     D+  N  +   P +
Sbjct: 140 K-LPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 272 FANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310
           F  +  +  L +  N L         +L  L       N
Sbjct: 197 FKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL----VGPF-PTVALTWKRNLYL 161
             +L     +   +  I    + ++  L    ++ N +    +G F    +L       L
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ-----KL 105

Query: 162 DLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG--ESLA--RYIVLSSNNFT 215
                N    L          L  + + HN  + S         +L    ++ LSSN   
Sbjct: 106 VAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLP-EYFSNLTNLEHLDLSSNKIQ 162

Query: 216 GCLPRSIGYMKELQ----EIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS 271
                 +  + ++      + L  N ++  +    G+ +   L    + +N+        
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQP--GAFKEIRLKELALDTNQLKSVPDGI 219

Query: 272 FANLNNIMRLDISDN 286
           F  L ++ ++ +  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 14/91 (15%), Positives = 23/91 (25%)

Query: 503 PVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPS 562
           P ++       P+P         PP  P     P  ++       +L+  P  +      
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 563 PPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQ 593
            P    PP  +             S P    
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQKKKSKPGKRM 95

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 43.5 bits (102), Expect = 8e-05
 Identities = 17/85 (20%), Positives = 22/85 (25%)

Query: 519 PPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPS 578
           P   +      P PV    P    P P      P  +Q          L P   +     
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 579 SPTPSPSPSPPPPIQSPPPTSPPPP 603
            P  +P P P    +   PT     
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQKKKS 89

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 14/89 (15%), Positives = 22/89 (24%)

Query: 477 PMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYP 536
           P  +        +  Q   P    P P R    PS +    +     +  P      +  
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 537 PPVRSSPPPTPSLSPPPPVQSPPPPSPPP 565
            P ++ PP       P          P  
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQKKKSKPGK 93

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 14/102 (13%), Positives = 19/102 (18%), Gaps = 3/102 (2%)

Query: 501 PPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPP 560
           P          P P     P    P PP             +     +L P    +    
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
                   PPP          P+      P  +         
Sbjct: 65  KPKKT---PPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 14/88 (15%), Positives = 19/88 (21%)

Query: 535 YPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQS 594
                     P P     P  Q P PP                 +    P        + 
Sbjct: 6   TQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKK 65

Query: 595 PPPTSPPPPVGSPPPPIQSPPPPVQSPP 622
           P  T PP P  +  P   +     +   
Sbjct: 66  PKKTPPPKPKKTQKPKKPTQKKKSKPGK 93

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 13/87 (14%), Positives = 15/87 (17%)

Query: 543 PPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPP 602
           P  T       P         P    PP  R  P        +                 
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64

Query: 603 PVGSPPPPIQSPPPPVQSPPPPSPPPP 629
                PPP        + P       P
Sbjct: 65  KPKKTPPPKPKKTQKPKKPTQKKKSKP 91

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 1/91 (1%)

Query: 513 MPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPV 572
           +P+ +     + P P         PP        PS      V +    +  P       
Sbjct: 4   IPTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPS-QLQQLVAALGALALQPKQKQKRA 62

Query: 573 RSPPPSSPTPSPSPSPPPPIQSPPPTSPPPP 603
           +  P  +P P P  +  P   +    S P  
Sbjct: 63  QKKPKKTPPPKPKKTQKPKKPTQKKKSKPGK 93

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 16/78 (20%), Positives = 20/78 (25%)

Query: 552 PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPI 611
           P PVQ   P   PP                 +       P Q        P    PP P 
Sbjct: 16  PAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPK 75

Query: 612 QSPPPPVQSPPPPSPPPP 629
           ++  P   +    S P  
Sbjct: 76  KTQKPKKPTQKKKSKPGK 93

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 17/97 (17%), Positives = 23/97 (23%), Gaps = 4/97 (4%)

Query: 523 YSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTP 582
           + P          P PV+      P   PP P +    PS    L    + +        
Sbjct: 3   FIPTQTFYGRRWRPAPVQ---RYIPQPQPPAPPRRRRGPSQLQQLV-AALGALALQPKQK 58

Query: 583 SPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQ 619
                  P    PP          P    +S P    
Sbjct: 59  QKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRM 95

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 47/201 (23%), Positives = 74/201 (36%), Gaps = 40/201 (19%)

Query: 94  AEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPET-FANMHRLEEFDVSNNRLVGPFPTVA 152
             +   LP     LLDL     + N L  +  E     +  L    +S+N L     + A
Sbjct: 31  PNVPQSLPSYT-ALLDL-----SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEA 83

Query: 153 LTWKRNL-YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVL 209
                NL YLDL  N+    L   LF     L+++ L +N                 +V+
Sbjct: 84  FVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNN---------------HIVVV 127

Query: 210 SSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEI--GSGEYKNLTVFDIRSNKFHGS 267
             N F          M +LQ++ L +NQ+S   P E+     +   L + D+ SNK    
Sbjct: 128 DRNAFED--------MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 268 VPQSFANLNNIMR--LDISDN 286
                  L   ++  L + +N
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 22/138 (15%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLV----GPFP-TVALTWKRNLYL 161
           + +L Y   ++N L  +    F+++  LE   + NN +V      F     L       L
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ-----KL 141

Query: 162 DLRFNNFEGELPPELFQ-----TGLDIIFLNHNWFRGSIPETIGESL----ARYIVLSSN 212
            L  N      P EL +       L ++ L+ N  +  +P T  + L       + L +N
Sbjct: 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199

Query: 213 NFTGCLPRSIGYMKELQE 230
               C  +        Q 
Sbjct: 200 PLE-CDCKLYQLFSHWQY 216

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 32/169 (18%)

Query: 160 YLDLRFNNFEGELPPELFQTG---LDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTG 216
            LDL  NN    L  E   T    L  + L+HN         +         +SS  F  
Sbjct: 43  LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN--------HLNF-------ISSEAFVP 86

Query: 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLN 276
                   +  L+ + L  N L   L   + S   + L V  + +N        +F ++ 
Sbjct: 87  --------VPNLRYLDLSSNHLH-TLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFEDMA 136

Query: 277 NIMRLDISDNMLTGF---VSADICKLPHLLNFTFSNNFFQGMAMECISG 322
            + +L +S N ++ F   +  D  KLP L+    S+N  + + +  +  
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 18/95 (18%), Positives = 24/95 (25%)

Query: 480 SPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPV 539
           S +            PP V    P      P+     S+       PPP+ P  S     
Sbjct: 1   SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60

Query: 540 RSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS 574
            + P      SP   +Q   P     V        
Sbjct: 61  FAVPTIHFKESPFYKIQRLIPELVMNVEVTGGRGM 95

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 44.2 bits (103), Expect = 8e-05
 Identities = 21/95 (22%), Positives = 26/95 (27%), Gaps = 4/95 (4%)

Query: 514 PSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVR 573
            +P S   V S   P       P  +R SP      S        PPP+ P         
Sbjct: 2   LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSS--- 58

Query: 574 SPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPP 608
               + PT     SP   IQ   P        +  
Sbjct: 59  -SSFAVPTIHFKESPFYKIQRLIPELVMNVEVTGG 92

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 19/92 (20%), Positives = 27/92 (29%)

Query: 529 SPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSP 588
           S  P+S         PPT     P  ++  P             R+PPP++P  S S S 
Sbjct: 1   SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60

Query: 589 PPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQS 620
                     SP   +    P +         
Sbjct: 61  FAVPTIHFKESPFYKIQRLIPELVMNVEVTGG 92

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 11/71 (15%), Positives = 17/71 (23%)

Query: 475 PSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS 534
            +P+ + +              P             S   S S  PP  +P   S     
Sbjct: 2   LTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSF 61

Query: 535 YPPPVRSSPPP 545
             P +     P
Sbjct: 62  AVPTIHFKESP 72

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 44.2 bits (103), Expect = 9e-05
 Identities = 15/81 (18%), Positives = 21/81 (25%)

Query: 547 PSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
              S    V +  P S  P+  P    +   +    S   S P        T    PV +
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298

Query: 607 PPPPIQSPPPPVQSPPPPSPP 627
           P            +  P S  
Sbjct: 299 PASVEYHAGMKSLNKAPYSSN 319

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 13/96 (13%), Positives = 21/96 (21%)

Query: 499 SYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSP 558
             P  V        +   S    V +  P S  P+  P    ++       S P    + 
Sbjct: 224 HVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTE 283

Query: 559 PPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQS 594
                      P              S +  P   +
Sbjct: 284 RTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 10/82 (12%), Positives = 17/82 (20%)

Query: 460 PPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSP 519
                    + + P         +     +T Q         P  R+    +   +P S 
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298

Query: 520 PPVYSPPPPSPPPVSYPPPVRS 541
           P               P    S
Sbjct: 299 PASVEYHAGMKSLNKAPYSSNS 320

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 13/86 (15%), Positives = 20/86 (23%), Gaps = 1/86 (1%)

Query: 516 PSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSP 575
                   S                 SP    + +    V S P  +P          S 
Sbjct: 234 SLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESV 293

Query: 576 PP-SSPTPSPSPSPPPPIQSPPPTSP 600
            P S+P      +    +   P +S 
Sbjct: 294 NPVSTPASVEYHAGMKSLNKAPYSSN 319

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 11/78 (14%), Positives = 20/78 (25%)

Query: 552 PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPI 611
                         V+   P    P  SPT + + +    + S P ++P           
Sbjct: 233 LSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETES 292

Query: 612 QSPPPPVQSPPPPSPPPP 629
            +P     S    +    
Sbjct: 293 VNPVSTPASVEYHAGMKS 310

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.1 bits (95), Expect = 8e-04
 Identities = 12/80 (15%), Positives = 18/80 (22%)

Query: 542 SPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPP 601
                 ++    P    P  SP         +S      +     +     +S  P S P
Sbjct: 240 ERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTP 299

Query: 602 PPVGSPPPPIQSPPPPVQSP 621
             V            P  S 
Sbjct: 300 ASVEYHAGMKSLNKAPYSSN 319

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.1 bits (95), Expect = 8e-04
 Identities = 11/84 (13%), Positives = 18/84 (21%)

Query: 546 TPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVG 605
             SL                     P++SP  +  T +       P  +P   +      
Sbjct: 232 DLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETE 291

Query: 606 SPPPPIQSPPPPVQSPPPPSPPPP 629
           S  P          +        P
Sbjct: 292 SVNPVSTPASVEYHAGMKSLNKAP 315

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.1 bits (95), Expect = 8e-04
 Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 1/102 (0%)

Query: 488 QSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTP 547
           Q+     P  V++   +      S   +  +  P    P  SP         +S     P
Sbjct: 219 QTFEGHVPELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSV-P 277

Query: 548 SLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPP 589
             +P    +     S  PV  P  V              S  
Sbjct: 278 FSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 11/132 (8%)

Query: 161 LDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTG 216
           L L  N F       +F+    L  I  ++N     I E   E  +    I+L+SN    
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95

Query: 217 CLPRSI-GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ-SFAN 274
            +   +   ++ L+ ++L  N+++ C+ ++   G   ++ +  +  N+   +V   +F  
Sbjct: 96  -VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIG-LSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 275 LNNIMRLDISDN 286
           L+++  L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 12/133 (9%), Positives = 20/133 (15%)

Query: 455 PPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMP 514
                 P   +       P          PP                P       P    
Sbjct: 2   SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61

Query: 515 SPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRS 574
                   +  P             + + P  P  +      +    +    L    + S
Sbjct: 62  WGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGS 121

Query: 575 PPPSSPTPSPSPS 587
                     S  
Sbjct: 122 AMSRPLIHFGSDY 134

>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Length = 424

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 14/127 (11%), Positives = 20/127 (15%), Gaps = 1/127 (0%)

Query: 467 PPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPP 526
           P V+ +P            PA   P       +  P                        
Sbjct: 132 PFVQLSPTFVAYEGFEEDVPAVQDPTADRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLS 191

Query: 527 PPSPPPVSYPPPVRSSPPPTPSLSP-PPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPS 585
                     P       P   +   P   Q           +  P         T    
Sbjct: 192 AFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPTYGDRSHQGTWEGP 251

Query: 586 PSPPPPI 592
               P +
Sbjct: 252 GDGRPVL 258

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 2/95 (2%)

Query: 219 PRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNI 278
              +   + L E+ +   Q    L      G    L    I  +      P +F     +
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 279 MRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313
            RL++S N L   +S    +   L     S N   
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 369 PPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRH 422
           PP+    PT   +++ P   P+ PA     P  P    +    P    +R+P H
Sbjct: 5   PPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPNH 58

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 16/51 (31%)

Query: 577 PSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
           PS       P+        P  S P P  + P P+ +  P   +      P
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 11/55 (20%), Positives = 17/55 (30%)

Query: 571 PVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPS 625
           P        P    +P+P P   +P P +  P   +   P  +       P   S
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKAS 148

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 40/196 (20%), Positives = 67/196 (34%), Gaps = 13/196 (6%)

Query: 118 NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF 177
             L  + P+   +   L    +S N L        + + R   L+L       +L  +  
Sbjct: 20  RNLTALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT 75

Query: 178 QTGLDIIFLNHNWFRGSIPETI-GESLARYIVLSSNNFTGCLPRSI-GYMKELQEIILME 235
              L  + L+HN  + S+P           + +S N  T  LP      + ELQE+ L  
Sbjct: 76  LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKG 133

Query: 236 NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS-FANLNNIMRLDISDNMLTGFVSA 294
           N+L   LP  + +     L    + +N     +P      L N+  L + +N L   +  
Sbjct: 134 NELK-TLPPGLLTP-TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189

Query: 295 DICKLPHLLNFTFSNN 310
                  L       N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 20/80 (25%)

Query: 547 PSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
             + P     + P P P          S    +     SP P     +   TS       
Sbjct: 100 CRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVRSASSDTSEELNSQD 159

Query: 607 PPPPIQSPPPPVQSPPPPSP 626
            PP   S  P   S   P  
Sbjct: 160 SPPKQDSTAPSSTSSSDPIL 179

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 15/100 (15%), Positives = 20/100 (20%), Gaps = 3/100 (3%)

Query: 504 VRSPPPPSPMPSPSSPPPVYSPPPPSPPPVS---YPPPVRSSPPPTPSLSPPPPVQSPPP 560
           V               P       P P P +                +L  P P      
Sbjct: 88  VVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVRSA 147

Query: 561 PSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSP 600
            S            P   S  PS + S  P +      + 
Sbjct: 148 SSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAM 187

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 10/98 (10%), Positives = 20/98 (20%)

Query: 443 PPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPP 502
               E     +  P         P P  +          +    A  +P+P+    +   
Sbjct: 91  RETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVRSASSD 150

Query: 503 PVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVR 540
                      P   S  P  +         +    + 
Sbjct: 151 TSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAMA 188

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 13/77 (16%), Positives = 17/77 (22%)

Query: 466 PPPVRSAPPPSPMPSPSSPPPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSP 525
           PP            +     P    P+  P             P      PS    V + 
Sbjct: 11  PPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPTK 70

Query: 526 PPPSPPPVSYPPPVRSS 542
           PP  P      P   + 
Sbjct: 71  PPLPPARTQGTPVHLNY 87

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 12/79 (15%), Positives = 18/79 (22%)

Query: 547 PSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGS 606
            +    PP Q     +             P     P  +          P      P   
Sbjct: 5   LTCRLDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRR 64

Query: 607 PPPPIQSPPPPVQSPPPPS 625
              P + P PP ++   P 
Sbjct: 65  AEVPTKPPLPPARTQGTPV 83

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 14/75 (18%), Positives = 20/75 (26%)

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV 604
             PS       Q          + P P   P  +  +   +   P      P      P 
Sbjct: 10  DPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPT 69

Query: 605 GSPPPPIQSPPPPVQ 619
             P PP ++   PV 
Sbjct: 70  KPPLPPARTQGTPVH 84

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 18/109 (16%), Positives = 25/109 (22%), Gaps = 3/109 (2%)

Query: 510 PSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYP 569
           P P P+    P       P P        ++       +L      +   P   PP   P
Sbjct: 13  PFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPP---P 69

Query: 570 PPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPV 618
              +  P   P P          + P  T P                 V
Sbjct: 70  RQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDV 118

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 11/51 (21%), Positives = 17/51 (33%)

Query: 577 PSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPPPVQSPPPPSPP 627
           P    P P+P+      + P  +P  P      P  +P     + P    P
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 11/55 (20%), Positives = 18/55 (32%)

Query: 538 PVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPI 592
           P+   P PTP+ +          P+ P      P  +P  + P      +P    
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTAT 148

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 18/249 (7%), Positives = 39/249 (15%), Gaps = 9/249 (3%)

Query: 365 WGGSPPSTPSAPTPKPSTSTPAQEPKTPAPAPPTPSLPSPPVASPTPPTWEWNRVPRHKV 424
              SP        P              A    T   P   V+         N       
Sbjct: 84  LTRSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVS---------NETQGEFT 134

Query: 425 PPIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSP 484
              +  P   +   P      +       +  P++ P   +     +  P     +    
Sbjct: 135 KDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQI 194

Query: 485 PPAQSTPQPSPPPVSYPPPVRSPPPPSPMPSPSSPPPVYSPPPPSPPPVSYPPPVRSSPP 544
              +      P        +                   +    S   +S      SS  
Sbjct: 195 GNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTE 254

Query: 545 PTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPV 604
                            +   +      ++    +              +          
Sbjct: 255 FVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDMRKGASSHEYNNEVP 314

Query: 605 GSPPPPIQS 613
                  + 
Sbjct: 315 FIETKLSRI 323

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810

 Score = 42.3 bits (98), Expect = 5e-04
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 524 SPPPPSPPPVSYPPPVRSSPPPTPSLSPPPPVQSPPPPSPPPVLYPPPVRSPPPSSPTPS 583
           + P    P       +  +  P   L P   +   PPP     L PPP+  PP     PS
Sbjct: 1   AAPAYGQPS----AAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPS 56

Query: 584 PSPSPPPP 591
              +  P 
Sbjct: 57  ELSNASPD 64

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 3/87 (3%)

Query: 426 PIIVEPPKPSSPTPTTMPPKQEPPPLVQSPPPSSPPPVSYPPPVRSAPPPSPMPSPSSPP 485
             +V P      +   M  ++       S    + PP        +A P         P 
Sbjct: 141 NPVVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSR---AAFPQGGRGRGRFPG 197

Query: 486 PAQSTPQPSPPPVSYPPPVRSPPPPSP 512
                 +   P     PP   P   + 
Sbjct: 198 AVPGGDRFPGPAGPGGPPPPFPAGQTH 224

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 40.5 bits (94), Expect = 9e-04
 Identities = 12/73 (16%), Positives = 16/73 (21%)

Query: 557 SPPPPSPPPVLYPPPVRSPPPSSPTPSPSPSPPPPIQSPPPTSPPPPVGSPPPPIQSPPP 616
           +    S   +      +S   S    +  P        P             P     P 
Sbjct: 148 NKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG 207

Query: 617 PVQSPPPPSPPPP 629
           P     PP P P 
Sbjct: 208 PAGPGGPPPPFPA 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	629
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.98
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.5
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.17
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.9
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.72
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.38
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.51

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.7e-38  Score=321.84  Aligned_cols=290  Identities=24%  Similarity=0.351  Sum_probs=259.4

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCCCCC-CCCCCC--cCceecCCCCCCCcccEEEEEcCCCCccc--cCchhhhCCcCCCE
Q 043930           38 KMAYVGLQAFKKAIYSDPYNHTENWV-GTDVCQ--YNGVLCDVFIDNQERFVAMIDLNKAEIAA--HLPPEMGWLLDLIY  112 (629)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~c~--~~g~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~  112 (629)
                      ..+..+|++||+.+. +.. .+..|. +.++|.  |.||.|+...  ...+|+.|+|++|++.+  .++..|+++++|++
T Consensus         5 ~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            5 PQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             HHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             HHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCC--CCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            345678999999874 443 677896 457888  9999997421  12679999999999998  89999999999999


Q ss_pred             EECCC-CCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCcc
Q 043930          113 FHANT-NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNW  190 (629)
Q Consensus       113 L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~  190 (629)
                      |+|++ |++.+.++..|.++.+|++|+|++|+|++.++..|.++.+|++|+|++|+|++.++..+.. .+|++|+|++|.
T Consensus        81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence            99995 9999999999999999999999999999889999999999999999999999888888776 999999999999


Q ss_pred             ccccCchhhhhh--hhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc
Q 043930          191 FRGSIPETIGES--LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV  268 (629)
Q Consensus       191 l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~  268 (629)
                      |++.++..++..  .|++|++++|++.+.++..|..+. |++|+|++|.|++.++..+.  .+.+|++|+|++|+|++.+
T Consensus       161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~  237 (313)
T 1ogq_A          161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC--TTSCCSEEECCSSEECCBG
T ss_pred             ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh--cCCCCCEEECCCCceeeec
Confidence            999998888773  799999999999999999999987 99999999999988888887  8999999999999999766


Q ss_pred             hHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       269 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      +. +..+.+|++|+|++|+|++.++..|.++.+|++|+|++|+|++.++.. ..+.+|+.|++.+|..
T Consensus       238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence            54 788999999999999999889999999999999999999999887765 7889999999999973

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-35  Score=342.38  Aligned_cols=258  Identities=24%  Similarity=0.386  Sum_probs=240.1

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      ..+|+.|+|++|++.+.++..|+++++|++|+|++|++.+.++..|.++.+|++|+|++|.+.+.++..+..+.+|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930          163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG  240 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  240 (629)
                      |++|++++.++..+.. .+|++|+|++|++++.++..++. .+|++|+|++|++.+.++..|+++++|++|+|++|.+.|
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            9999999888888776 89999999999999999998877 589999999999999999999999999999999999988


Q ss_pred             cCCccccc--------------------------------------------------------------------CCCC
Q 043930          241 CLPSEIGS--------------------------------------------------------------------GEYK  252 (629)
Q Consensus       241 ~~p~~~~~--------------------------------------------------------------------~~l~  252 (629)
                      .++..++.                                                                    +.+.
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            77765431                                                                    1356


Q ss_pred             CCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceeccc
Q 043930          253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEK  332 (629)
Q Consensus       253 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~  332 (629)
                      +|++|||++|+|+|.++..|+++.+|++|+|++|.|+|.++..|.++.+|++|||++|++++.++..+.++..|++|+|+
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccc
Q 043930          333 GNCLAEME  340 (629)
Q Consensus       333 ~N~l~~~~  340 (629)
                      +|.+++..
T Consensus       713 ~N~l~g~i  720 (768)
T 3rgz_A          713 NNNLSGPI  720 (768)
T ss_dssp             SSEEEEEC
T ss_pred             CCcccccC
Confidence            99998653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-34  Score=325.56  Aligned_cols=290  Identities=17%  Similarity=0.251  Sum_probs=230.9

Q ss_pred             hhhHHHHHHHHHHHHhhcCCCCCCC-------CCC-CCCCCCc---CceecCCCCCCCcccEEEEEcCCCCccccCchhh
Q 043930           36 RMKMAYVGLQAFKKAIYSDPYNHTE-------NWV-GTDVCQY---NGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEM  104 (629)
Q Consensus        36 ~l~~~~~~l~~~~~~~~~~~~~~l~-------~~~-~~~~c~~---~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~  104 (629)
                      ....++.||.++++++....|....       +|. +.++|.|   .||.|+.     ..+|+.|+|+++++.|.++.+|
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-----~~~V~~L~L~~~~l~g~lp~~l  101 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-----NGRVTGLSLEGFGASGRVPDAI  101 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-----TCCEEEEECTTSCCEEEECGGG
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-----CCCEEEEEecCcccCCcCChHH
Confidence            3345788999999998776665444       796 5689999   9999973     2689999999999999999999


Q ss_pred             hCCcCCCEEECCCCCC----------------------------------------------------------------
Q 043930          105 GWLLDLIYFHANTNRL----------------------------------------------------------------  120 (629)
Q Consensus       105 ~~l~~L~~L~L~~n~l----------------------------------------------------------------  120 (629)
                      ++|++|++|+|++|.+                                                                
T Consensus       102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  181 (636)
T 4eco_A          102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI  181 (636)
T ss_dssp             GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred             hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence            9999999999998843                                                                


Q ss_pred             --------------CccChhhhcCCCCCcEEEccCCcCCCC-----------------chhhhh--CCCCCcEEEccCCc
Q 043930          121 --------------CGIIPETFANMHRLEEFDVSNNRLVGP-----------------FPTVAL--TWKRNLYLDLRFNN  167 (629)
Q Consensus       121 --------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~  167 (629)
                                    ++ ++..|+++++|++|+|++|.|++.                 ++..+.  ++.+|++|+|++|+
T Consensus       182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~  260 (636)
T 4eco_A          182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP  260 (636)
T ss_dssp             CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred             chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence                          34 677899999999999999999985                 888888  99999999999999


Q ss_pred             CccCCCchhcc-CCCCEEEecCcc-ccc-cCchhhhh-------hhhHHHHhcCCcccccCCc--cccCCCCCcEEEccC
Q 043930          168 FEGELPPELFQ-TGLDIIFLNHNW-FRG-SIPETIGE-------SLARYIVLSSNNFTGCLPR--SIGYMKELQEIILME  235 (629)
Q Consensus       168 l~~~ip~~~~~-~~L~~L~L~~n~-l~~-~~~~~~~~-------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~Ls~  235 (629)
                      +.+.++..+.. .+|++|+|++|. ++| .++..++.       .+|++|+|++|+++ .++.  .|+++.+|++|+|++
T Consensus       261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~  339 (636)
T 4eco_A          261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY  339 (636)
T ss_dssp             TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred             CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC
Confidence            99999988877 899999999998 998 78888876       58999999999999 7887  899999999999999


Q ss_pred             CcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccC-ccceecccccccccccccccCCC--CCcEEEecCCcc
Q 043930          236 NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN-IMRLDISDNMLTGFVSADICKLP--HLLNFTFSNNFF  312 (629)
Q Consensus       236 n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~L~~N~l  312 (629)
                      |+++|.++ .+.  .+.+|++|+|++|+|+ .++..|.++.+ |++|+|++|.|+ .++..+..+.  +|++|+|++|.|
T Consensus       340 N~l~g~ip-~~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          340 NQLEGKLP-AFG--SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             CCCEEECC-CCE--EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             CcCccchh-hhC--CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence            99998888 555  6777788888887777 66666777777 777777777776 3444444433  556666666655


Q ss_pred             CCcchhhhc-------CCCCCceecccCCccc
Q 043930          313 QGMAMECIS-------GSRDDVYFEEKGNCLA  337 (629)
Q Consensus       313 ~~~~~~~l~-------~l~~L~~L~l~~N~l~  337 (629)
                      .+..+..|.       .+.+|++|+|++|.|+
T Consensus       415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~  446 (636)
T 4eco_A          415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQIS  446 (636)
T ss_dssp             TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred             CCcchhhhcccccccccCCCCCEEECcCCccC
Confidence            554444444       4445555555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-33  Score=305.15  Aligned_cols=256  Identities=17%  Similarity=0.190  Sum_probs=200.1

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhh--hcCCCCCcEEEccCCcCCCCchhh-hhCCCCC
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPET--FANMHRLEEFDVSNNRLVGPFPTV-ALTWKRN  158 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L  158 (629)
                      .+.+|++|+|++|++.+..+..|+++.+|++|+|++|++.+.+...  |.++.+|++|+|++|.|.+..+.. +.++.+|
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF  156 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence            3567888888888887777777888888888888888877644443  777888888888888887765554 6777888


Q ss_pred             cEEEccCCcCccCCCchhcc-----------------------------------CCCCEEEecCccccccCchhhhh--
Q 043930          159 LYLDLRFNNFEGELPPELFQ-----------------------------------TGLDIIFLNHNWFRGSIPETIGE--  201 (629)
Q Consensus       159 ~~L~Ls~n~l~~~ip~~~~~-----------------------------------~~L~~L~L~~n~l~~~~~~~~~~--  201 (629)
                      ++|+|++|++++..+..+..                                   .+|++|+|++|.+++.++..+..  
T Consensus       157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  236 (455)
T 3v47_A          157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI  236 (455)
T ss_dssp             CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence            88888888777544433321                                   45788888888777655444322  


Q ss_pred             --------------------------------------hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          202 --------------------------------------SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       202 --------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                                                            .+|++|++++|++.+.++..|+++++|++|+|++|+|++..+
T Consensus       237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  316 (455)
T 3v47_A          237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD  316 (455)
T ss_dssp             TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence                                                  257778888888888788888888999999999999887777


Q ss_pred             cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS  323 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  323 (629)
                      ..+.  .+.+|++|+|++|+|++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++..+.+..+
T Consensus       317 ~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          317 NAFW--GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             TTTT--TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hHhc--CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence            7776  78889999999999887778888888999999999999988778888888999999999999988877778888


Q ss_pred             CCCceecccCCccccc
Q 043930          324 RDDVYFEEKGNCLAEM  339 (629)
Q Consensus       324 ~~L~~L~l~~N~l~~~  339 (629)
                      ++|++|+|++|.|.+.
T Consensus       395 ~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          395 TSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             TTCCEEECCSSCBCCC
T ss_pred             CcccEEEccCCCcccC
Confidence            8999999999988754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.4e-34  Score=329.24  Aligned_cols=254  Identities=28%  Similarity=0.456  Sum_probs=235.0

Q ss_pred             cEEEEEcCCCCccccCchhhhC--CcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           85 FVAMIDLNKAEIAAHLPPEMGW--LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        85 ~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      +|+.|+|++|++.+.++..+..  +.+|++|+|++|++.+.++..|.++.+|++|+|++|++++.++..+..+.+|++|+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            7899999999998888887777  88999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930          163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG  240 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  240 (629)
                      |++|++++.++..+.. .+|++|+|++|.+++.++..++. .+|++|+|++|++.+.++..|+++.+|++|+|++|++.|
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  528 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG  528 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence            9999999889888876 89999999999999999988876 589999999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCCcEEEecCCcccccchHHhh-----------------------------------------------
Q 043930          241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA-----------------------------------------------  273 (629)
Q Consensus       241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----------------------------------------------  273 (629)
                      .++..+.  .+.+|++|+|++|.+++.++..+.                                               
T Consensus       529 ~~p~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (768)
T 3rgz_A          529 NIPAELG--DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR  606 (768)
T ss_dssp             ECCGGGG--GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred             cCCHHHc--CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence            9999998  899999999999999877665443                                               


Q ss_pred             -----------------------cccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceec
Q 043930          274 -----------------------NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFE  330 (629)
Q Consensus       274 -----------------------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~  330 (629)
                                             ++.+|++|||++|++++.++..|.++.+|++|+|++|+|++.++..|.++++|++||
T Consensus       607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence                                   246788999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccc
Q 043930          331 EKGNCLAEME  340 (629)
Q Consensus       331 l~~N~l~~~~  340 (629)
                      |++|.+++..
T Consensus       687 Ls~N~l~g~i  696 (768)
T 3rgz_A          687 LSSNKLDGRI  696 (768)
T ss_dssp             CCSSCCEECC
T ss_pred             CCCCcccCcC
Confidence            9999998543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.98  E-value=6.3e-33  Score=300.40  Aligned_cols=278  Identities=17%  Similarity=0.194  Sum_probs=232.2

Q ss_pred             CcccEEEEEcCCCCccccC-chhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhh--hhCCCCC
Q 043930           82 QERFVAMIDLNKAEIAAHL-PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTV--ALTWKRN  158 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L  158 (629)
                      .+.+|++|+|++|.+.+.+ ...|.++++|++|+|++|++.+..+..|+++.+|++|+|++|++++.+...  +..+.+|
T Consensus        52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  131 (455)
T 3v47_A           52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL  131 (455)
T ss_dssp             SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred             cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence            3567999999999997555 567999999999999999999888899999999999999999998855554  8899999


Q ss_pred             cEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-----------------------------------
Q 043930          159 LYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-----------------------------------  201 (629)
Q Consensus       159 ~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-----------------------------------  201 (629)
                      ++|+|++|++++..+..++.  .+|++|+|++|.+++..+..+..                                   
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  211 (455)
T 3v47_A          132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN  211 (455)
T ss_dssp             CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred             CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence            99999999999666766443  89999999999999776655543                                   


Q ss_pred             hhhHHHHhcCCcccccCCcccc---------------------------------------CCCCCcEEEccCCcccccC
Q 043930          202 SLARYIVLSSNNFTGCLPRSIG---------------------------------------YMKELQEIILMENQLSGCL  242 (629)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~~~l~---------------------------------------~l~~L~~L~Ls~n~l~~~~  242 (629)
                      .+|++|++++|++.+.++..|.                                       .+.+|++|+|++|++.+.+
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence            2577788888877653332221                                       1257899999999998877


Q ss_pred             CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcC
Q 043930          243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG  322 (629)
Q Consensus       243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  322 (629)
                      +..+.  .+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|+++....|.++.+|++|+|++|+|+++....|.+
T Consensus       292 ~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  369 (455)
T 3v47_A          292 KSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG  369 (455)
T ss_dssp             TTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             hhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence            87777  8999999999999999888889999999999999999999888888999999999999999999998899999


Q ss_pred             CCCCceecccCCccccccccCCC----CCCCCCCCCCCCCCCC
Q 043930          323 SRDDVYFEEKGNCLAEMEYQKLP----TECYPVVSKPVDCSKD  361 (629)
Q Consensus       323 l~~L~~L~l~~N~l~~~~~~~~~----~~c~~~~~~p~~Cs~~  361 (629)
                      +.+|++|+|++|.|++.....+.    .....+..+.+.|++.
T Consensus       370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999999999999976643322    2334667777778764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.98  E-value=7.3e-33  Score=286.49  Aligned_cols=273  Identities=18%  Similarity=0.209  Sum_probs=203.1

Q ss_pred             hhhHHHHHHHHHHHHhhcCCCCCCCCCC-----CCCCCCcCceecCCCC----CCCcccEEEEEcCCCCccccCchhhhC
Q 043930           36 RMKMAYVGLQAFKKAIYSDPYNHTENWV-----GTDVCQYNGVLCDVFI----DNQERFVAMIDLNKAEIAAHLPPEMGW  106 (629)
Q Consensus        36 ~l~~~~~~l~~~~~~~~~~~~~~l~~~~-----~~~~c~~~g~~~~~~~----~~~~~~L~~L~L~~n~l~~~~p~~~~~  106 (629)
                      .+.++..+|.+|+..+..+....+..|.     ..++|.|.|+.|+...    .....+|+.|+|++|+|. .++..+++
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~  102 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR  102 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence            3455677899999988777766777783     5688999999986321    113467999999999997 57788889


Q ss_pred             CcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhc---------
Q 043930          107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF---------  177 (629)
Q Consensus       107 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~---------  177 (629)
                      +.+|++|+|++|+|. .++..|+++.+|++|+|++|.|+ .++..+..+.+|++|+|++|++.+.++..+.         
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            999999999999998 78888999999999999999998 5788899999999999999888888887664         


Q ss_pred             -cCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcE
Q 043930          178 -QTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV  256 (629)
Q Consensus       178 -~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~  256 (629)
                       ..+|++|+|++|.|+                        .++..|+++.+|++|+|++|.|+ .++..+.  .+.+|++
T Consensus       181 ~l~~L~~L~L~~n~l~------------------------~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~--~l~~L~~  233 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR------------------------SLPASIANLQNLKSLKIRNSPLS-ALGPAIH--HLPKLEE  233 (328)
T ss_dssp             ESTTCCEEEEEEECCC------------------------CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG--GCTTCCE
T ss_pred             cCCCCCEEECcCCCcC------------------------cchHhhcCCCCCCEEEccCCCCC-cCchhhc--cCCCCCE
Confidence             255666666666555                        34445666667777777777776 3444454  5667777


Q ss_pred             EEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          257 FDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       257 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      |+|++|++.+.++..|.++.+|++|+|++|.+.+.++..|.++.+|++|+|++|.+.+.++..|.++.+|+.+++..|.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            77777766666666667777777777777766666666666777777777777777666667777777777777666555


Q ss_pred             cc
Q 043930          337 AE  338 (629)
Q Consensus       337 ~~  338 (629)
                      ..
T Consensus       314 ~~  315 (328)
T 4fcg_A          314 AQ  315 (328)
T ss_dssp             CC
T ss_pred             HH
Confidence            43

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.98  E-value=5e-32  Score=311.29  Aligned_cols=266  Identities=17%  Similarity=0.195  Sum_probs=215.3

Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCC--CCc------------CceecCCCCCCCcccEEEEEcCCCCccccCch
Q 043930           37 MKMAYVGLQAFKKAIYSDPYNHTENWVGTDV--CQY------------NGVLCDVFIDNQERFVAMIDLNKAEIAAHLPP  102 (629)
Q Consensus        37 l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--c~~------------~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  102 (629)
                      ...+..+|++|++.+....|.....|...+.  |.|            .||.|+.     ..+|+.|+|++|++.|.++.
T Consensus       267 ~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-----~~~V~~L~Ls~~~L~G~ip~  341 (876)
T 4ecn_A          267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-----NGRVTGLSLAGFGAKGRVPD  341 (876)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-----TSCEEEEECTTTCCEEEECG
T ss_pred             chHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecC-----CCCEEEEECccCCCCCcCch
Confidence            3467889999999984332222222222344  999            9999974     36799999999999999999


Q ss_pred             hhhCCcCCCEEEC-CCCCCCcc----------------------------------------------------------
Q 043930          103 EMGWLLDLIYFHA-NTNRLCGI----------------------------------------------------------  123 (629)
Q Consensus       103 ~~~~l~~L~~L~L-~~n~l~~~----------------------------------------------------------  123 (629)
                      +|++|++|++|+| ++|.+.|.                                                          
T Consensus       342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~  421 (876)
T 4ecn_A          342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS  421 (876)
T ss_dssp             GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred             HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence            9999999999999 77654332                                                          


Q ss_pred             ------------------ChhhhcCCCCCcEEEccCCcCCC-----------------Cchhhhh--CCCCCcEEEccCC
Q 043930          124 ------------------IPETFANMHRLEEFDVSNNRLVG-----------------PFPTVAL--TWKRNLYLDLRFN  166 (629)
Q Consensus       124 ------------------~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~l~--~l~~L~~L~Ls~n  166 (629)
                                        ++..|++|.+|++|+|++|.|++                 .++..++  ++.+|++|+|++|
T Consensus       422 ~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N  501 (876)
T 4ecn_A          422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC  501 (876)
T ss_dssp             CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred             ccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence                              67789999999999999999998                 3788877  9999999999999


Q ss_pred             cCccCCCchhcc-CCCCEEEecCcc-ccc-cCchhhhhh--------hhHHHHhcCCcccccCCc--cccCCCCCcEEEc
Q 043930          167 NFEGELPPELFQ-TGLDIIFLNHNW-FRG-SIPETIGES--------LARYIVLSSNNFTGCLPR--SIGYMKELQEIIL  233 (629)
Q Consensus       167 ~l~~~ip~~~~~-~~L~~L~L~~n~-l~~-~~~~~~~~~--------~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L  233 (629)
                      ++.+.++..+.. .+|++|+|++|. |++ .++..++..        +|++|+|++|++. .++.  .|+++.+|++|+|
T Consensus       502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L  580 (876)
T 4ecn_A          502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC  580 (876)
T ss_dssp             TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred             CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence            999999988877 899999999998 888 788877764        6999999999999 7887  8999999999999


Q ss_pred             cCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccC-ccceecccccccccccccccCCC--CCcEEEecCC
Q 043930          234 MENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN-IMRLDISDNMLTGFVSADICKLP--HLLNFTFSNN  310 (629)
Q Consensus       234 s~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~L~~N  310 (629)
                      ++|+|+ .++ .+.  .+.+|++|+|++|+|+ .++..|.++.+ |++|+|++|.|+ .++..+..+.  +|+.|+|++|
T Consensus       581 s~N~l~-~lp-~~~--~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          581 VHNKVR-HLE-AFG--TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             TTSCCC-BCC-CCC--TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred             CCCCcc-cch-hhc--CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence            999998 777 565  7889999999999998 77778888888 888888888887 3455554443  2555555555


Q ss_pred             ccCC
Q 043930          311 FFQG  314 (629)
Q Consensus       311 ~l~~  314 (629)
                      .|.+
T Consensus       655 ~l~g  658 (876)
T 4ecn_A          655 KIGS  658 (876)
T ss_dssp             CTTT
T ss_pred             cCCC
Confidence            5544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=3.5e-32  Score=296.44  Aligned_cols=250  Identities=14%  Similarity=0.120  Sum_probs=125.0

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL  163 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  163 (629)
                      .+|+.|+|++|+|..+....|.++.+|++|+|++|++.+.....|.++.+|++|+|++|.+.+.....|..+.+|++|+|
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  159 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL  159 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence            44555555555554433334445555555555555555444444555555555555555554444444455555555555


Q ss_pred             cCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930          164 RFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG  240 (629)
Q Consensus       164 s~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  240 (629)
                      ++|+++ .++...+.  .+|++|+|++|.+.+.....+.. .+|++|++++|.+.+.+...+....+|++|+|++|+|+ 
T Consensus       160 ~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-  237 (477)
T 2id5_A          160 EKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-  237 (477)
T ss_dssp             ESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-
T ss_pred             CCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-
Confidence            555554 23322222  45555555555554433333322 24555555555444444433333345555555555554 


Q ss_pred             cCC-cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhh
Q 043930          241 CLP-SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMEC  319 (629)
Q Consensus       241 ~~p-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  319 (629)
                      .++ ..+.  .+.+|++|+|++|.|++.....|.++.+|++|+|++|+|.++....|.++.+|++|+|++|+|+++....
T Consensus       238 ~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          238 AVPYLAVR--HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             SCCHHHHT--TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             ccCHHHhc--CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence            222 2232  4555555555555555444444555555555555555555555555555555555555555555555555


Q ss_pred             hcCCCCCceecccCCccc
Q 043930          320 ISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       320 l~~l~~L~~L~l~~N~l~  337 (629)
                      |..+.+|++|+|++|.|.
T Consensus       316 ~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          316 FHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             BSCGGGCCEEECCSSCEE
T ss_pred             cCCCcccCEEEccCCCcc
Confidence            555555555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=8.9e-32  Score=293.28  Aligned_cols=310  Identities=15%  Similarity=0.126  Sum_probs=259.7

Q ss_pred             CCCCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcC
Q 043930           13 KDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLN   92 (629)
Q Consensus        13 ~~~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~   92 (629)
                      ...+|++.+  ..+++.|+|++|++.....           +      .        +          ..+.+|+.|+|+
T Consensus        22 ~l~~ip~~~--~~~l~~L~L~~n~l~~~~~-----------~------~--------~----------~~l~~L~~L~L~   64 (477)
T 2id5_A           22 RFVAVPEGI--PTETRLLDLGKNRIKTLNQ-----------D------E--------F----------ASFPHLEELELN   64 (477)
T ss_dssp             CCSSCCSCC--CTTCSEEECCSSCCCEECT-----------T------T--------T----------TTCTTCCEEECT
T ss_pred             CcCcCCCCC--CCCCcEEECCCCccceECH-----------h------H--------c----------cCCCCCCEEECC
Confidence            345677665  3588999999997644210           0      0        0          034679999999


Q ss_pred             CCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCC
Q 043930           93 KAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGEL  172 (629)
Q Consensus        93 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~i  172 (629)
                      +|.|.++.+..|+++.+|++|+|++|++.+.....|.++.+|++|+|++|++.+.....|..+.+|++|+|++|++++..
T Consensus        65 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  144 (477)
T 2id5_A           65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS  144 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred             CCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC
Confidence            99999988999999999999999999999777777899999999999999999888888999999999999999998555


Q ss_pred             Cchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCC
Q 043930          173 PPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE  250 (629)
Q Consensus       173 p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~  250 (629)
                      ...+.. .+|++|+|++|.+++.....+.. .+|++|+|++|.+.+.....|.++.+|++|+|++|.+.+.++..+.  .
T Consensus       145 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~  222 (477)
T 2id5_A          145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--Y  222 (477)
T ss_dssp             TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT--T
T ss_pred             hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc--c
Confidence            544444 89999999999999765555554 5899999999999988888899999999999999998878877776  5


Q ss_pred             CCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceec
Q 043930          251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFE  330 (629)
Q Consensus       251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~  330 (629)
                      ..+|++|+|++|+|++.....|.++.+|++|+|++|.|+++....|.++.+|++|+|++|+|.++....|.++.+|++|+
T Consensus       223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  302 (477)
T 2id5_A          223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN  302 (477)
T ss_dssp             TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred             CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence            66999999999999976667899999999999999999988888899999999999999999999899999999999999


Q ss_pred             ccCCccccccccCCC----CCCCCCCCCCCCCCCC
Q 043930          331 EKGNCLAEMEYQKLP----TECYPVVSKPVDCSKD  361 (629)
Q Consensus       331 l~~N~l~~~~~~~~~----~~c~~~~~~p~~Cs~~  361 (629)
                      |++|.|+......+.    .....+..+.+.|++.
T Consensus       303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             CCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            999999876543322    2334566777777753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1.7e-31  Score=300.89  Aligned_cols=228  Identities=15%  Similarity=0.235  Sum_probs=157.5

Q ss_pred             CcccEEEEEcCCCCcccc-----------------Cchhhh--CCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCC
Q 043930           82 QERFVAMIDLNKAEIAAH-----------------LPPEMG--WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN  142 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  142 (629)
                      .+.+|++|+|++|+|.+.                 ++..++  ++++|++|+|++|++.+.++..|+++++|++|+|++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            567789999999998885                 888888  8999999999999888888888899999999999999


Q ss_pred             c-CCC-CchhhhhCC------CCCcEEEccCCcCccCCCc--hhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhc
Q 043930          143 R-LVG-PFPTVALTW------KRNLYLDLRFNNFEGELPP--ELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLS  210 (629)
Q Consensus       143 ~-l~~-~~~~~l~~l------~~L~~L~Ls~n~l~~~ip~--~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~  210 (629)
                      + +++ .++..+..+      .+|++|+|++|+++ .++.  .+.. .+|++|+|++|.++|.++ .++. .+|++|+|+
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~  361 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA  361 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence            8 877 777777766      88888888888888 7877  5555 788888888888887777 4443 467777777


Q ss_pred             CCcccccCCccccCCCC-CcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhh-------cccCcccee
Q 043930          211 SNNFTGCLPRSIGYMKE-LQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA-------NLNNIMRLD  282 (629)
Q Consensus       211 ~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~  282 (629)
                      +|++. .++..|+++.+ |++|+|++|.|+ .++..+....+.+|++|+|++|+|++.++..|.       .+.+|++|+
T Consensus       362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~  439 (636)
T 4eco_A          362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN  439 (636)
T ss_dssp             SSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred             CCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence            77777 66666777776 777777777776 566555421223555555555555554444444       344444555


Q ss_pred             cccccccccccccccCCCCCcEEEecCCccC
Q 043930          283 ISDNMLTGFVSADICKLPHLLNFTFSNNFFQ  313 (629)
Q Consensus       283 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  313 (629)
                      |++|.|+++....+..+.+|++|+|++|+|+
T Consensus       440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          440 LSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             CcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            5554444322222333444444444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=6.6e-30  Score=286.95  Aligned_cols=273  Identities=16%  Similarity=0.147  Sum_probs=160.3

Q ss_pred             cEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEcc
Q 043930           85 FVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLR  164 (629)
Q Consensus        85 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  164 (629)
                      .|+.|+|++|++.+.....|+++++|++|+|++|+++ .++..|.++.+|++|+|++|.+.+..+..+..+.+|++|+|+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            5777777777777666666777777777777777776 455566777777777777777766555566666666666666


Q ss_pred             CCcCccCCCchhcc--CCCCEEEecCccccccC--chhhhh-hhhHHHHhcCCcccccCCccc-----------------
Q 043930          165 FNNFEGELPPELFQ--TGLDIIFLNHNWFRGSI--PETIGE-SLARYIVLSSNNFTGCLPRSI-----------------  222 (629)
Q Consensus       165 ~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~--~~~~~~-~~L~~L~l~~n~l~~~~~~~l-----------------  222 (629)
                      +|.+.+.++...+.  .+|++|+|++|.+++..  ...++. .+|++|++++|.+.+..+..|                 
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            66665555444332  55666666665555432  222222 344455555554444444444                 


Q ss_pred             --------cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc---chHHhhcccCccceeccccccccc
Q 043930          223 --------GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS---VPQSFANLNNIMRLDISDNMLTGF  291 (629)
Q Consensus       223 --------~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~  291 (629)
                              .++.+|++|+|++|.+.+..+..+.  .+.+|++|+|++|+|++.   ....|..+.+|++|+|++|.++++
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT--TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHHHHh--CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence                    4445555555555555444444444  455566666666655542   113455566666666666666655


Q ss_pred             ccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccccccC----CCCCCCCCCCCCCCCCCC
Q 043930          292 VSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQK----LPTECYPVVSKPVDCSKD  361 (629)
Q Consensus       292 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~----~~~~c~~~~~~p~~Cs~~  361 (629)
                      .+..|.++.+|++|+|++|++++...+.+.++..| +|++++|.|++.....    .......+..+++.|++.
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            55566666666666666666666666666666666 6666666666443221    112344566677777653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=3.2e-30  Score=289.48  Aligned_cols=158  Identities=13%  Similarity=0.106  Sum_probs=121.5

Q ss_pred             hhhHHHHhcCCcccccCC-ccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccc-cchHHhhcccCcc
Q 043930          202 SLARYIVLSSNNFTGCLP-RSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG-SVPQSFANLNNIM  279 (629)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~  279 (629)
                      .+|++|++++|.+.+... ..|.++.+|++|+|++|.+.+.++..+.  .+.+|++|+|++|++++ .++..|.++.+|+
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL--GLTSLNTLKMAGNSFKDNTLSNVFANTTNLT  476 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc--CCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence            346666666666665555 5667777778888888877766666666  67888888888888876 3677788888899


Q ss_pred             ceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccccc--CCC--CCCCCCCCCC
Q 043930          280 RLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQ--KLP--TECYPVVSKP  355 (629)
Q Consensus       280 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~--~~~--~~c~~~~~~p  355 (629)
                      +|+|++|.|++..+..|.++.+|++|+|++|++++..+..|.++.+|++|+|++|.|+.....  ...  .....+..++
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence            999999988888778888899999999999999988888899999999999999998865532  221  2344667788


Q ss_pred             CCCCCC
Q 043930          356 VDCSKD  361 (629)
Q Consensus       356 ~~Cs~~  361 (629)
                      +.|++.
T Consensus       557 ~~c~c~  562 (606)
T 3vq2_A          557 VACICE  562 (606)
T ss_dssp             CCCSST
T ss_pred             cccCCc
Confidence            888765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=2.6e-30  Score=265.60  Aligned_cols=229  Identities=21%  Similarity=0.291  Sum_probs=212.7

Q ss_pred             cCCCEEECCCCCCCc--cChhhhcCCCCCcEEEccC-CcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCE
Q 043930          108 LDLIYFHANTNRLCG--IIPETFANMHRLEEFDVSN-NRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDI  183 (629)
Q Consensus       108 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~  183 (629)
                      .+|++|+|++|++.+  .++..|.++.+|++|+|++ |.+.+.++..|.++.+|++|+|++|+|++.++..+.. .+|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999998  8899999999999999995 9999989999999999999999999999888888776 99999


Q ss_pred             EEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCC-CCcEEEccCCcccccCCcccccCCCCCCcEEEecC
Q 043930          184 IFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMK-ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRS  261 (629)
Q Consensus       184 L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~  261 (629)
                      |+|++|.|++.++..+.. .+|++|+|++|++++.++..|+++. +|++|+|++|++++.++..+.  .+. |++|+|++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~--~l~-L~~L~Ls~  206 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLN-LAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG--GCC-CSEEECCS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh--CCc-ccEEECcC
Confidence            999999999999888876 5899999999999999999999998 999999999999999998887  565 99999999


Q ss_pred             CcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930          262 NKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       262 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      |+|++.++..|.++.+|++|+|++|.|++.+.. +..+.+|++|+|++|+|++..+..|..+.+|++|+|++|.|++..
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            999999999999999999999999999976655 888999999999999999989999999999999999999998543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=4.4e-30  Score=272.40  Aligned_cols=294  Identities=16%  Similarity=0.090  Sum_probs=213.4

Q ss_pred             hhcCCCcccccchhhhHHHHHH-HHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCc
Q 043930           23 DQYDLKDKTFESHRMKMAYVGL-QAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLP  101 (629)
Q Consensus        23 ~l~~L~~L~ls~~~l~~~~~~l-~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  101 (629)
                      .+.+++.|+++++.+......+ ..++...         .. ....|.+.++....+  ..+.+|+.|+|++|++.+..+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~---------~L-~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~  110 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVE---------LL-NLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRYLPP  110 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCS---------EE-ECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCT
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCc---------EE-ECCCCcccccChhhc--cCCCCcCEEECCCCCCCcCCH
Confidence            5688899999988776543322 2222111         10 112233333322111  246789999999999999888


Q ss_pred             hhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCC
Q 043930          102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGL  181 (629)
Q Consensus       102 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L  181 (629)
                      ..|+++.+|++|+|++|++.+.....|.++.+|++|+|++|.|.+.....+..+.+|++|+|++|++++ +... ...+|
T Consensus       111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~-~l~~L  188 (390)
T 3o6n_A          111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLS-LIPSL  188 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGG-GCTTC
T ss_pred             HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cccc-ccccc
Confidence            889999999999999999997666667999999999999999998777889999999999999999984 3211 11455


Q ss_pred             CEEEecCcccccc------------------CchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          182 DIIFLNHNWFRGS------------------IPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       182 ~~L~L~~n~l~~~------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      ++|++++|.+++.                  ++.. ...+|++|++++|.+++.  ..|.++.+|++|+|++|.|++..+
T Consensus       189 ~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~  265 (390)
T 3o6n_A          189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY  265 (390)
T ss_dssp             SEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred             ceeecccccccccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence            5555555544421                  1111 113577788888887754  567888888888888888887767


Q ss_pred             cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS  323 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  323 (629)
                      ..+.  .+.+|++|+|++|+|++ +...+..+++|++|+|++|+|.+ ++..+..+.+|++|+|++|.|+++.   +..+
T Consensus       266 ~~~~--~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~  338 (390)
T 3o6n_A          266 HPFV--KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTH  338 (390)
T ss_dssp             GGGT--TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTT
T ss_pred             hHcc--ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhh
Confidence            7776  78888888888888874 44556678888888998888885 4556777888899999998888763   6677


Q ss_pred             CCCceecccCCcccccc
Q 043930          324 RDDVYFEEKGNCLAEME  340 (629)
Q Consensus       324 ~~L~~L~l~~N~l~~~~  340 (629)
                      .+|++|++++|.|.+..
T Consensus       339 ~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          339 HTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             CCCSEEECCSSCEEHHH
T ss_pred             ccCCEEEcCCCCccchh
Confidence            88899999999887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=4.5e-30  Score=288.33  Aligned_cols=255  Identities=16%  Similarity=0.096  Sum_probs=168.2

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      .+.+|++|+|++|++.+..+..|+++++|++|+|++|++.+.....|.++.+|++|+|++|++.+.....+..+.+|++|
T Consensus        79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  158 (606)
T 3t6q_A           79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL  158 (606)
T ss_dssp             TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred             CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence            34567777777777766666667777777777777777765545556667777777777777665332334446677777


Q ss_pred             EccCCcCccCCCchhcc-CCCC--EEEecCccccccCchhhhh-------------------------------------
Q 043930          162 DLRFNNFEGELPPELFQ-TGLD--IIFLNHNWFRGSIPETIGE-------------------------------------  201 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~-~~L~--~L~L~~n~l~~~~~~~~~~-------------------------------------  201 (629)
                      +|++|++++..+..+.. .+|+  +|++++|.+.+..+..+..                                     
T Consensus       159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~  238 (606)
T 3t6q_A          159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM  238 (606)
T ss_dssp             ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred             EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence            77777666333333333 5566  6666666665544333221                                     


Q ss_pred             ---------------hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccc
Q 043930          202 ---------------SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG  266 (629)
Q Consensus       202 ---------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~  266 (629)
                                     ..|++|++++|.+.+.....|+++++|++|+|++|+++ .++..+.  .+.+|++|+|++|++++
T Consensus       239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~--~l~~L~~L~l~~n~l~~  315 (606)
T 3t6q_A          239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV--GLSTLKKLVLSANKFEN  315 (606)
T ss_dssp             CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC--SCTTCCEEECTTCCCSB
T ss_pred             cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc--ccccCCEEECccCCcCc
Confidence                           14566677777777666666777888888888888877 6666665  67788888888888876


Q ss_pred             cchHHhhcccCccceecccccccccccc-cccCCCCCcEEEecCCccCCcc--hhhhcCCCCCceecccCCccccc
Q 043930          267 SVPQSFANLNNIMRLDISDNMLTGFVSA-DICKLPHLLNFTFSNNFFQGMA--MECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       267 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~--~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      ..+..+.++.+|++|+|++|.+.+.+.. .+.++.+|++|+|++|.+.+..  ...+.++.+|++|++++|.+.+.
T Consensus       316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  391 (606)
T 3t6q_A          316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL  391 (606)
T ss_dssp             GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred             CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence            6666777777777777777777644433 3666777777777777776654  45566677777777777766544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.3e-29  Score=291.27  Aligned_cols=312  Identities=17%  Similarity=0.179  Sum_probs=198.2

Q ss_pred             CCCCCcchhhhcCCCcccccchh-hhH--HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEE
Q 043930           14 DGKLPNDFEDQYDLKDKTFESHR-MKM--AYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMID   90 (629)
Q Consensus        14 ~~~i~~~l~~l~~L~~L~ls~~~-l~~--~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~   90 (629)
                      .+.++..|.++.+|++|++++|+ +..  ....+..+...+  .....+..+ ....|.+..+... .....+.+|+.|+
T Consensus       504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~--~~l~~L~~L-~Ls~N~L~~ip~~-~~l~~L~~L~~L~  579 (876)
T 4ecn_A          504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE--DTGPKIQIF-YMGYNNLEEFPAS-ASLQKMVKLGLLD  579 (876)
T ss_dssp             CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCT--TTTTTCCEE-ECCSSCCCBCCCH-HHHTTCTTCCEEE
T ss_pred             CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcc--cccCCccEE-EeeCCcCCccCCh-hhhhcCCCCCEEE
Confidence            57788889999999999999997 654  223333333110  000011110 1112222211100 0011355677777


Q ss_pred             cCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCC-CcEEEccCCcCCCCchhhhhCCCC--CcEEEccCCc
Q 043930           91 LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHR-LEEFDVSNNRLVGPFPTVALTWKR--NLYLDLRFNN  167 (629)
Q Consensus        91 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~Ls~n~  167 (629)
                      |++|+|. .++ .|+++.+|++|+|++|+|. .++..|.++.+ |++|+|++|.|+ .++..+..+..  |++|+|++|+
T Consensus       580 Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             CTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCc
Confidence            7777776 555 6777777777777777777 56666777777 777777777777 45655555543  7777777777


Q ss_pred             CccCCCchh---c--c-CCCCEEEecCccccccCchhhhh--hhhHHHHhcCCcccccCCccccC--------CCCCcEE
Q 043930          168 FEGELPPEL---F--Q-TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIGY--------MKELQEI  231 (629)
Q Consensus       168 l~~~ip~~~---~--~-~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L  231 (629)
                      |.+.++...   .  . .+|++|+|++|.|+ .++..+..  .+|++|+|++|+|. .++..+..        |++|++|
T Consensus       656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L  733 (876)
T 4ecn_A          656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTI  733 (876)
T ss_dssp             TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEE
T ss_pred             CCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEE
Confidence            775544222   1  1 46777777777777 55555442  46777888888777 44443332        2278888


Q ss_pred             EccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccc------ccccccccccccCCCCCcEE
Q 043930          232 ILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD------NMLTGFVSADICKLPHLLNF  305 (629)
Q Consensus       232 ~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~L~~L  305 (629)
                      +|++|+|+ .++..++...+.+|++|+|++|+|++ ++..+.++.+|++|+|++      |++.+.++..|.++.+|++|
T Consensus       734 ~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L  811 (876)
T 4ecn_A          734 DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL  811 (876)
T ss_dssp             ECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred             ECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence            88888777 66666542257778888888888875 666777788888887765      66677777777778888888


Q ss_pred             EecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930          306 TFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       306 ~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      +|++|.|. .++..+.  ++|+.|+|++|.|..+.
T Consensus       812 ~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          812 QIGSNDIR-KVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             ECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             ECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccC
Confidence            88888873 3444333  57888888888776554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=9.9e-29  Score=255.86  Aligned_cols=264  Identities=19%  Similarity=0.218  Sum_probs=176.7

Q ss_pred             CCCcCceecCCCCC-----CCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccC
Q 043930           67 VCQYNGVLCDVFID-----NQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSN  141 (629)
Q Consensus        67 ~c~~~g~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  141 (629)
                      .|.+..+.|.....     .....|+.|+|++|+|.+.....|+++.+|++|+|++|++.+..+..|.++.+|++|+|++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            34555555543211     1234677778888777776666777777888888888777776677777777888888887


Q ss_pred             CcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhc-c-CCCCEEEecCccccc--cCchhhhh-hhhHHHHhcCCcccc
Q 043930          142 NRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF-Q-TGLDIIFLNHNWFRG--SIPETIGE-SLARYIVLSSNNFTG  216 (629)
Q Consensus       142 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~-~-~~L~~L~L~~n~l~~--~~~~~~~~-~~L~~L~l~~n~l~~  216 (629)
                      |+|+. ++..+.  .+|++|+|++|+++ .+....+ . .+|++|+|++|.++.  .....+.. .+|++|++++|++.+
T Consensus       110 n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          110 NQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            77764 333332  67778888877777 3433333 2 777788887777753  33444443 467777777777764


Q ss_pred             cCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccc
Q 043930          217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADI  296 (629)
Q Consensus       217 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  296 (629)
                       ++..+.  .+|++|+|++|+|++..+..+.  .+.+|++|+|++|+|++.....|..+.+|++|+|++|.|+. ++..+
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l  259 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGL  259 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTT
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhh
Confidence             333332  6777777777777766566665  67777777777777776666667777777777777777773 55667


Q ss_pred             cCCCCCcEEEecCCccCCcchhhhcC------CCCCceecccCCcccccc
Q 043930          297 CKLPHLLNFTFSNNFFQGMAMECISG------SRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       297 ~~l~~L~~L~L~~N~l~~~~~~~l~~------l~~L~~L~l~~N~l~~~~  340 (629)
                      ..+.+|++|+|++|.|+++....|..      ...|+.|++.+|.+....
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence            77777777777777777766655543      256677777777766433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=7.1e-30  Score=281.33  Aligned_cols=152  Identities=19%  Similarity=0.207  Sum_probs=67.8

Q ss_pred             hHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc--cCCcccccCCCCCCcEEEecCCcccccchH-HhhcccCccc
Q 043930          204 ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG--CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ-SFANLNNIMR  280 (629)
Q Consensus       204 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~  280 (629)
                      |++|++++|++++.++..|+++.+|++|+|++|+|++  .++..+.  .+.+|++|+|++|++++.++. .|..+.+|++
T Consensus       326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT--QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT--TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh--hCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            3444444444444444444444444444444444442  2222232  344444444444444432222 1333344444


Q ss_pred             eecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccccccCCC----CCCCCCCCCCC
Q 043930          281 LDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLP----TECYPVVSKPV  356 (629)
Q Consensus       281 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~----~~c~~~~~~p~  356 (629)
                      |+|++|.|++.++..+.  .+|++|+|++|+|+.+ +..+..+.+|++|+|++|.|++.....+.    ........+.+
T Consensus       404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             EECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECcCCCCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence            44444444333222221  4555555555555533 33344666777777777766654432111    12234455556


Q ss_pred             CCCC
Q 043930          357 DCSK  360 (629)
Q Consensus       357 ~Cs~  360 (629)
                      .|++
T Consensus       481 ~c~c  484 (520)
T 2z7x_B          481 DCSC  484 (520)
T ss_dssp             CCCH
T ss_pred             cccC
Confidence            6654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=4.9e-29  Score=258.44  Aligned_cols=263  Identities=18%  Similarity=0.245  Sum_probs=212.2

Q ss_pred             CCcCceecCCCC-----CCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCC
Q 043930           68 CQYNGVLCDVFI-----DNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN  142 (629)
Q Consensus        68 c~~~g~~~~~~~-----~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  142 (629)
                      |.+..+.|....     .....+|+.|+|++|+|.+..+..|.++.+|++|+|++|++.+..+..|.++.+|++|+|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            556666665321     113457899999999998887888999999999999999999888889999999999999999


Q ss_pred             cCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCccccc--cCchhhhhhhhHHHHhcCCcccccC
Q 043930          143 RLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRG--SIPETIGESLARYIVLSSNNFTGCL  218 (629)
Q Consensus       143 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~  218 (629)
                      .++. ++..+.  .+|++|+|++|+++ .++...+.  .+|++|+|++|.++.  .....+...+|++|++++|++++ +
T Consensus       113 ~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l  187 (332)
T 2ft3_A          113 HLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-I  187 (332)
T ss_dssp             CCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-C
T ss_pred             cCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-c
Confidence            9885 444433  78999999999998 55555443  899999999999863  45555555589999999999885 4


Q ss_pred             CccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccC
Q 043930          219 PRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICK  298 (629)
Q Consensus       219 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  298 (629)
                      +..+.  .+|++|+|++|.+++.....+.  .+.+|++|+|++|+|++.....|..+.+|++|+|++|+|+ .++..+.+
T Consensus       188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          188 PKDLP--ETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             CSSSC--SSCSCCBCCSSCCCCCCTTSST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             Ccccc--CCCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence            44443  6899999999999866666776  7899999999999999877778899999999999999998 46777889


Q ss_pred             CCCCcEEEecCCccCCcchhhhcCC------CCCceecccCCcccccc
Q 043930          299 LPHLLNFTFSNNFFQGMAMECISGS------RDDVYFEEKGNCLAEME  340 (629)
Q Consensus       299 l~~L~~L~L~~N~l~~~~~~~l~~l------~~L~~L~l~~N~l~~~~  340 (629)
                      +.+|++|+|++|.|+++..+.|..+      ..|+.|++.+|.+....
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~  310 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE  310 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence            9999999999999998877766653      56889999999887443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=3.4e-30  Score=283.86  Aligned_cols=251  Identities=15%  Similarity=0.133  Sum_probs=194.0

Q ss_pred             CcccEEEEEcCCCCccc-cCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCC--cEEEccCCcC--CCCchhhhhCC-
Q 043930           82 QERFVAMIDLNKAEIAA-HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRL--EEFDVSNNRL--VGPFPTVALTW-  155 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~l~~l-  155 (629)
                      .+.+|++|+|++|.|.+ .++..|+++++|++|+|++|+|.+   ..|..+.+|  ++|+|++|.+  .+..+..+..+ 
T Consensus        88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccc
Confidence            45667888888888776 356777888888888888887765   345556666  7777777666  33333333321 


Q ss_pred             --------------------------------------------------------------------------------
Q 043930          156 --------------------------------------------------------------------------------  155 (629)
Q Consensus       156 --------------------------------------------------------------------------------  155 (629)
                                                                                                      
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~  244 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV  244 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence                                                                                            


Q ss_pred             --CCCcEEEccCCcCccCCCchh-----------------------------------------------------cc-C
Q 043930          156 --KRNLYLDLRFNNFEGELPPEL-----------------------------------------------------FQ-T  179 (629)
Q Consensus       156 --~~L~~L~Ls~n~l~~~ip~~~-----------------------------------------------------~~-~  179 (629)
                        .+|++|+|++|+++|.++..+                                                     .. .
T Consensus       245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~  324 (520)
T 2z7x_B          245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS  324 (520)
T ss_dssp             HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred             hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence              256777777777665555443                                                     12 6


Q ss_pred             CCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccc--cCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcE
Q 043930          180 GLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTG--CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV  256 (629)
Q Consensus       180 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~  256 (629)
                      +|++|+|++|.+++.++..++. .+|++|++++|++++  .++..|+++.+|++|+|++|.+.+.++.... ..+.+|++
T Consensus       325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~-~~l~~L~~  403 (520)
T 2z7x_B          325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC-SWTKSLLS  403 (520)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC-CCCTTCCE
T ss_pred             cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh-ccCccCCE
Confidence            7899999999999877777655 579999999999996  4567799999999999999999975766532 17899999


Q ss_pred             EEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          257 FDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       257 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      |+|++|+|++.++..+.  .+|++|+|++|+|+ .++..+.++.+|++|+|++|+|+++....|..+.+|++|++++|.|
T Consensus       404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence            99999999877665443  79999999999999 4677777999999999999999987666789999999999999999


Q ss_pred             ccc
Q 043930          337 AEM  339 (629)
Q Consensus       337 ~~~  339 (629)
                      .+.
T Consensus       481 ~c~  483 (520)
T 2z7x_B          481 DCS  483 (520)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=4.1e-29  Score=260.51  Aligned_cols=289  Identities=15%  Similarity=0.201  Sum_probs=192.9

Q ss_pred             chhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCCcccc
Q 043930           20 DFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAH   99 (629)
Q Consensus        20 ~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~   99 (629)
                      .+..+.+|++|+++++++.... ++..+.         .+... ....|.+.++..    ...+.+|+.|+|++|.+.+.
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~~-~~~~~~---------~L~~L-~l~~n~i~~~~~----~~~l~~L~~L~L~~n~i~~~  103 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASIQ-GIEYLT---------NLEYL-NLNGNQITDISP----LSNLVKLTNLYIGTNKITDI  103 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCCT-TGGGCT---------TCCEE-ECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC
T ss_pred             cchhcccccEEEEeCCccccch-hhhhcC---------CccEE-EccCCccccchh----hhcCCcCCEEEccCCcccCc
Confidence            4567788888888887765421 111111         11110 111222222221    12456788888888887663


Q ss_pred             CchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccC
Q 043930          100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT  179 (629)
Q Consensus       100 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~  179 (629)
                        ..+.++.+|++|+|++|++.+.. . +.++.+|++|+|++|.....+.. +..+.+|++|+|++|++. .+.......
T Consensus       104 --~~~~~l~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~~~~l~  177 (347)
T 4fmz_A          104 --SALQNLTNLRELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTPIANLT  177 (347)
T ss_dssp             --GGGTTCTTCSEEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGGGCT
T ss_pred             --hHHcCCCcCCEEECcCCcccCch-h-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-CchhhccCC
Confidence              46788888888888888887542 2 77888888888888865554433 777888888888888876 443322227


Q ss_pred             CCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEe
Q 043930          180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDI  259 (629)
Q Consensus       180 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L  259 (629)
                      +|++|+|++|.+.+.. ......+|++|++++|.+.+...  +..+.+|++|+|++|++++. .. +.  .+.+|++|+|
T Consensus       178 ~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~--~l~~L~~L~l  250 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LA--NLSQLTWLEI  250 (347)
T ss_dssp             TCSEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GT--TCTTCCEEEC
T ss_pred             CCCEEEccCCcccccc-cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hh--cCCCCCEEEC
Confidence            7888888888877432 22233567778888887775433  67777888888888887743 22 43  6778888888


Q ss_pred             cCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          260 RSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       260 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      ++|.+++.  ..+..+.+|++|+|++|.|++.  ..+..+.+|++|+|++|.+.+.....+.++.+|++|++++|.+++.
T Consensus       251 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          251 GTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            88877753  4577777888888888877764  4567777888888888888777777777788888888888877765


Q ss_pred             c
Q 043930          340 E  340 (629)
Q Consensus       340 ~  340 (629)
                      .
T Consensus       327 ~  327 (347)
T 4fmz_A          327 R  327 (347)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=5.1e-29  Score=283.61  Aligned_cols=279  Identities=13%  Similarity=0.162  Sum_probs=210.2

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCc--cChhhhcCC--CCCcEEEccCCcCCCCchhhhhCCCC
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCG--IIPETFANM--HRLEEFDVSNNRLVGPFPTVALTWKR  157 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~  157 (629)
                      .+.+|+.|+|++|.+.+.....|..+.+|++|+|++|.+..  .....|..+  .+|++|+|++|++.+..+..+..+.+
T Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            45678888888888888777788888888888888886542  122233332  57888888888888877778888889


Q ss_pred             CcEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCccc--ccCCccccCCCCCcEEE
Q 043930          158 NLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFT--GCLPRSIGYMKELQEII  232 (629)
Q Consensus       158 L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~  232 (629)
                      |++|+|++|++++.++...+.  .+|++|+|++|.+.+.....+.. ..|++|++++|.+.  +.++..|+++.+|++|+
T Consensus       407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~  486 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD  486 (680)
T ss_dssp             CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred             CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence            999999999888767654444  78899999998887666655554 47888888888876  45677788888888888


Q ss_pred             ccCCcccccCCcccccCCCCCCcEEEecCCcccccch--------HHhhcccCccceecccccccccccccccCCCCCcE
Q 043930          233 LMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP--------QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLN  304 (629)
Q Consensus       233 Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  304 (629)
                      |++|+|++.....+.  .+.+|++|+|++|+|++...        ..|.++.+|++|+|++|+|+.+....|.++.+|++
T Consensus       487 Ls~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          487 LSNNNIANINDDMLE--GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             CCSSCCCCCCTTTTT--TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCCcCChhhhc--cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            888888855555565  78888888888888875321        23677888888888888888655556888888888


Q ss_pred             EEecCCccCCcchhhhcCCCCCceecccCCccccccccC-----CCCCCCCCCCCCCCCCCCC
Q 043930          305 FTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQK-----LPTECYPVVSKPVDCSKDE  362 (629)
Q Consensus       305 L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-----~~~~c~~~~~~p~~Cs~~~  362 (629)
                      |+|++|+|+++....|.++.+|++|+|++|.|+......     .......+..+++.|+|..
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            888888888887777888888888888888887655321     2233446667788887653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.9e-29  Score=258.88  Aligned_cols=246  Identities=17%  Similarity=0.165  Sum_probs=209.4

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      .+.+|+.|+|++|+|.+..+..|+++.+|++|+|++|+++. ++..+.  .+|++|+|++|.+++.....+.++.+|++|
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  150 (330)
T 1xku_A           74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV  150 (330)
T ss_dssp             TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred             cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence            46789999999999999889999999999999999999984 444333  799999999999999888889999999999


Q ss_pred             EccCCcCcc--CCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930          162 DLRFNNFEG--ELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL  238 (629)
Q Consensus       162 ~Ls~n~l~~--~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  238 (629)
                      +|++|+++.  .....+.. .+|++|+|++|.+++ ++..+. .+|++|++++|++.+.....|.++.+|++|+|++|.|
T Consensus       151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            999999963  33444443 899999999999984 444443 6899999999999988888999999999999999999


Q ss_pred             cccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccC------CCCCcEEEecCCcc
Q 043930          239 SGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICK------LPHLLNFTFSNNFF  312 (629)
Q Consensus       239 ~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~------l~~L~~L~L~~N~l  312 (629)
                      ++.....+.  .+.+|++|+|++|+|+ .++.++..+.+|++|+|++|.|+++....|+.      ...|+.|+|++|.+
T Consensus       229 ~~~~~~~~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          229 SAVDNGSLA--NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CEECTTTGG--GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ceeChhhcc--CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            977666776  7899999999999999 77788999999999999999999877666754      37899999999998


Q ss_pred             CC--cchhhhcCCCCCceecccCCc
Q 043930          313 QG--MAMECISGSRDDVYFEEKGNC  335 (629)
Q Consensus       313 ~~--~~~~~l~~l~~L~~L~l~~N~  335 (629)
                      ..  +....|..+..|+.|+|++|+
T Consensus       306 ~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          306 QYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccCccccccccceeEEEecccC
Confidence            65  556788899999999999985

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=2.8e-29  Score=266.18  Aligned_cols=270  Identities=17%  Similarity=0.171  Sum_probs=172.5

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      +.+++.|++++|.+...-...|.++++|++|+|++|++.+.....|.++.+|++|+|++|.+.+..+..|.++.+|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45566666666666554444456666667777766666655555666666666777766666665555666666666666


Q ss_pred             ccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccC---------------
Q 043930          163 LRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGY---------------  224 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~---------------  224 (629)
                      |++|+|+ .++..++.  .+|++|+|++|.+++.....+.. .+|++|++++|.+++.....+.+               
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence            6666666 55555432  66666666666666554444443 45666666666655431111111               


Q ss_pred             ----------------------CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCcccee
Q 043930          225 ----------------------MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD  282 (629)
Q Consensus       225 ----------------------l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  282 (629)
                                            +.+|++|+|++|++++.  ..+.  .+.+|++|+|++|.|++..+..|.++.+|++|+
T Consensus       203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHc--CCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence                                  13455666666666532  2343  678888888888888877777888888888888


Q ss_pred             cccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccccccCCCC-CCCCCCCCCCCCC
Q 043930          283 ISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPT-ECYPVVSKPVDCS  359 (629)
Q Consensus       283 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-~c~~~~~~p~~Cs  359 (629)
                      |++|+|+++ ...+..+.+|++|+|++|++.++. ..+..+.+|++|+|++|.|+...+..... ....+..+.+.|+
T Consensus       279 L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          279 ISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCcCccc-CcccCCCCCCCEEECCCCcceecC-ccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence            888888763 455667888888888888887653 34667788888888888888765443322 1224444555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.5e-29  Score=260.62  Aligned_cols=246  Identities=16%  Similarity=0.146  Sum_probs=209.4

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      .+.+|+.|+|++|+|.+..+..|+++.+|++|+|++|++.. ++..+.  .+|++|+|++|+|++.....+.++.+|++|
T Consensus        76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  152 (332)
T 2ft3_A           76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI  152 (332)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred             CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence            56789999999999999889999999999999999999984 444433  799999999999998777779999999999


Q ss_pred             EccCCcCcc--CCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccc
Q 043930          162 DLRFNNFEG--ELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS  239 (629)
Q Consensus       162 ~Ls~n~l~~--~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  239 (629)
                      +|++|+++.  .....+...+|++|+|++|.+++ ++..+. .+|++|++++|.+.+.....|.++.+|++|+|++|+|+
T Consensus       153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~  230 (332)
T 2ft3_A          153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR  230 (332)
T ss_dssp             ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred             ECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            999999963  33333333599999999999985 454444 68999999999999888889999999999999999999


Q ss_pred             ccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccC------CCCCcEEEecCCccC
Q 043930          240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICK------LPHLLNFTFSNNFFQ  313 (629)
Q Consensus       240 ~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~------l~~L~~L~L~~N~l~  313 (629)
                      +.....+.  .+.+|++|+|++|+|+ .++..+..+.+|++|+|++|.|+++....|+.      ..+|+.|+|++|.+.
T Consensus       231 ~~~~~~~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          231 MIENGSLS--FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCCTTGGG--GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cCChhHhh--CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            76666676  7999999999999999 77888999999999999999999877666665      367999999999987


Q ss_pred             --CcchhhhcCCCCCceecccCCc
Q 043930          314 --GMAMECISGSRDDVYFEEKGNC  335 (629)
Q Consensus       314 --~~~~~~l~~l~~L~~L~l~~N~  335 (629)
                        ++....|..+.+|+.|++++|+
T Consensus       308 ~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          308 YWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccCcccccccchhhhhhccccc
Confidence              6677889999999999999885

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=3.6e-29  Score=280.18  Aligned_cols=251  Identities=18%  Similarity=0.168  Sum_probs=138.7

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      +.+++.|++++|.+..+....|.++.+|++|+|++|.|.+.....|.++.+|++|+|++|.|.+..+..|.++.+|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34456666666666554445556666666666666666655555666666666666666666665555556666666666


Q ss_pred             ccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCC--------------
Q 043930          163 LRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYM--------------  225 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l--------------  225 (629)
                      |++|.|+ .++..+|.  .+|++|+|++|.|++..+..++. .+|++|+|++|.+.+.....+.++              
T Consensus       130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            6666665 44444432  56666666666666555544443 355666666655553311111110              


Q ss_pred             -----------------------CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCcccee
Q 043930          226 -----------------------KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD  282 (629)
Q Consensus       226 -----------------------~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  282 (629)
                                             .+|++|+|++|.|++.  ..+.  .+.+|++|+|++|.|++.++..|.++.+|++|+
T Consensus       209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  284 (597)
T 3oja_B          209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  284 (597)
T ss_dssp             CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhc--cCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence                                   1244444444444321  2233  456666666666666655566666666666666


Q ss_pred             cccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930          283 ISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       283 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      |++|.|+++ +..+..+.+|++|+|++|.|.++ ...+..+.+|++|+|++|.|....
T Consensus       285 Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          285 ISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             CTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC
Confidence            666666652 34445566666666666666543 233445555566666665555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=263.61  Aligned_cols=272  Identities=16%  Similarity=0.188  Sum_probs=220.5

Q ss_pred             CCCCCCcCceecCCCC-------CCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcE
Q 043930           64 GTDVCQYNGVLCDVFI-------DNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEE  136 (629)
Q Consensus        64 ~~~~c~~~g~~~~~~~-------~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  136 (629)
                      ....|.|.++ |+...       .....+|+.|+|++|+|.+.....|.++.+|++|+|++|++.+..+..|.++.+|++
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3456777766 54321       113457999999999999877778999999999999999999888888999999999


Q ss_pred             EEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCc-hhcc--CCCCEEEecCcc-ccccCchhhhh-hhhHHHHhcC
Q 043930          137 FDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPP-ELFQ--TGLDIIFLNHNW-FRGSIPETIGE-SLARYIVLSS  211 (629)
Q Consensus       137 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~-~~~~--~~L~~L~L~~n~-l~~~~~~~~~~-~~L~~L~l~~  211 (629)
                      |+|++|+|++.....+.++.+|++|+|++|+++ .++. ..+.  .+|++|+|++|. +++.....+.. .+|++|++++
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            999999999866667899999999999999998 6665 3333  899999999994 66554555554 5899999999


Q ss_pred             CcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhh---cccCccceecccccc
Q 043930          212 NNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA---NLNNIMRLDISDNML  288 (629)
Q Consensus       212 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l  288 (629)
                      |++.+..+..|+++.+|++|+|++|.++ .++..+. ..+.+|++|+|++|++++.....+.   .+..|+.++|++|.+
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l  261 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV-DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI  261 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHH-HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccc-cchhhhh-hhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence            9999888899999999999999999987 4444433 1588999999999999875443332   356677888888877


Q ss_pred             ccc----ccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          289 TGF----VSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       289 ~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      .+.    ++..+.++.+|++|+|++|+|+++....|.++++|++|+|++|.+.+.
T Consensus       262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            653    556788999999999999999987777778999999999999998754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=9.2e-29  Score=287.76  Aligned_cols=256  Identities=17%  Similarity=0.188  Sum_probs=197.1

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhh--hcCCCCCcEEEccCCcCCCCch-hhhhCCCCC
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPET--FANMHRLEEFDVSNNRLVGPFP-TVALTWKRN  158 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L  158 (629)
                      .+.+|+.|+|++|+|.+..+..|+++.+|++|+|++|++.+.+...  |.++.+|++|+|++|.+.+... ..|.++.+|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            4677889999999988888888889999999999999888755444  8888899999999998877543 568888999


Q ss_pred             cEEEccCCcCccCCCchhcc---CCCCEEEecCccccccCchhhhh-------hhhHHHHhcCCcccccCCcccc-----
Q 043930          159 LYLDLRFNNFEGELPPELFQ---TGLDIIFLNHNWFRGSIPETIGE-------SLARYIVLSSNNFTGCLPRSIG-----  223 (629)
Q Consensus       159 ~~L~Ls~n~l~~~ip~~~~~---~~L~~L~L~~n~l~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~l~-----  223 (629)
                      ++|+|++|.|++.....+..   .+|++|+|++|.+.+.++..++.       ..|++|++++|.+.+.+...|.     
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            99999999888666655543   67888888888877665543322       2377777777766544332222     


Q ss_pred             -------------------------------C--CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchH
Q 043930          224 -------------------------------Y--MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ  270 (629)
Q Consensus       224 -------------------------------~--l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~  270 (629)
                                                     +  ..+|++|+|++|.+.+..+..+.  .+.+|++|+|++|+|++..+.
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~  308 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADE  308 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCCEECTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCCCCChH
Confidence                                           1  15788888888888866666666  788888888888888877777


Q ss_pred             HhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          271 SFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       271 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      .|.++.+|++|+|++|.|+++....|.++.+|++|+|++|.|.++....|.++.+|++|+|++|.|+.+
T Consensus       309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred             HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence            788888888888888888877777788888888888888888887777788888888888888887654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=1.2e-28  Score=276.68  Aligned_cols=135  Identities=16%  Similarity=0.122  Sum_probs=103.0

Q ss_pred             hhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC-cccccCCCCCCcEEEecCCcccccchHHhhcccCccce
Q 043930          203 LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP-SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL  281 (629)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  281 (629)
                      +|++|++++|.+.+ ++..|.++.+|++|+|++|++.+..+ ..+.  .+.+|++|+|++|++++..+..|.++.+|++|
T Consensus       377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh--ccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            34555555555443 33556667777777777777775555 3444  67888888888888887777788888888888


Q ss_pred             ecccccccc-cccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930          282 DISDNMLTG-FVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       282 ~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      +|++|.+.+ .++..|.++.+|++|+|++|++++.....|.++.+|++|+|++|.+++..
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  513 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD  513 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred             ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC
Confidence            888888887 36777888899999999999998888888888999999999999888764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.3e-29  Score=255.71  Aligned_cols=243  Identities=17%  Similarity=0.198  Sum_probs=122.4

Q ss_pred             CCcCceecCCCCC-----CCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCcc--ChhhhcCCCCCcEEEcc
Q 043930           68 CQYNGVLCDVFID-----NQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGI--IPETFANMHRLEEFDVS  140 (629)
Q Consensus        68 c~~~g~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls  140 (629)
                      |.|.++.|.....     ....+|+.|+|++|+|..+....|+++.+|++|+|++|++...  ....+.++.+|++|+|+
T Consensus         7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            5566666653211     1234566666666666544334456666666666666666522  23455566666666666


Q ss_pred             CCcCCCCchhhhhCCCCCcEEEccCCcCccCCC-chhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccc-
Q 043930          141 NNRLVGPFPTVALTWKRNLYLDLRFNNFEGELP-PELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTG-  216 (629)
Q Consensus       141 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip-~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~-  216 (629)
                      +|.+.+ ++..+..+.+|++|+|++|++++... ..+.. .+|++|+|++|.+.+.....+.. .+|++|++++|.+.+ 
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            666654 44445666666666666666653222 12222 56666666666655444433332 344444444444443 


Q ss_pred             cCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccc
Q 043930          217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADI  296 (629)
Q Consensus       217 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  296 (629)
                      .++..|.++.+|++|+|++|+|++..+..+.  .+.+|++|+|++|+|++.....|..+.+|++|+|++|.|.+.....+
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhc--CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            2344444444444444444444433333333  34444444444444444333344444444444444444444444444


Q ss_pred             cCC-CCCcEEEecCCccC
Q 043930          297 CKL-PHLLNFTFSNNFFQ  313 (629)
Q Consensus       297 ~~l-~~L~~L~L~~N~l~  313 (629)
                      ..+ .+|++|+|++|.|.
T Consensus       244 ~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCCTTCCEEECTTCCEE
T ss_pred             HhhhccCCEEEccCCCee
Confidence            444 24444444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.2e-29  Score=282.10  Aligned_cols=154  Identities=16%  Similarity=0.213  Sum_probs=70.2

Q ss_pred             CCCEEEecCccccccCchhhhh-hhhHHHHhcCCccccc--CCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcE
Q 043930          180 GLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGC--LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV  256 (629)
Q Consensus       180 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~  256 (629)
                      +|++|+|++|.+++.++..++. .+|++|++++|++++.  ++..|+++.+|++|+|++|++++.++..... .+.+|++
T Consensus       354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-~l~~L~~  432 (562)
T 3a79_B          354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA-WAESILV  432 (562)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC-CCTTCCE
T ss_pred             CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc-CcccCCE
Confidence            3444444444444333333322 2344444444444431  1233444444444444444444323332211 3444444


Q ss_pred             EEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          257 FDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       257 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      |+|++|+|++.++..+.  .+|++|+|++|+|+. ++..+.++.+|++|+|++|+|+++....+..+.+|++|++++|.+
T Consensus       433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             EECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence            44444444433222111  355555555555553 333344556666666666666654444455566666666666655


Q ss_pred             c
Q 043930          337 A  337 (629)
Q Consensus       337 ~  337 (629)
                      .
T Consensus       510 ~  510 (562)
T 3a79_B          510 D  510 (562)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=7.7e-29  Score=277.50  Aligned_cols=294  Identities=16%  Similarity=0.097  Sum_probs=223.8

Q ss_pred             hhcCCCcccccchhhhHHHHHH-HHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCc
Q 043930           23 DQYDLKDKTFESHRMKMAYVGL-QAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLP  101 (629)
Q Consensus        23 ~l~~L~~L~ls~~~l~~~~~~l-~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  101 (629)
                      .+.+++.|+++++.+......+ ..+..+.         .. ....|.+.++....+  ..+.+|+.|+|++|.|.+..+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~---------~L-~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~  116 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVE---------LL-NLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRYLPP  116 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCS---------EE-ECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCc---------EE-ECCCCCCCCCChHHh--cCCCCCCEEECCCCcCCCCCH
Confidence            4567788888888765543221 1111111         10 112233333322111  246789999999999999888


Q ss_pred             hhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCC
Q 043930          102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGL  181 (629)
Q Consensus       102 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L  181 (629)
                      ..|+++.+|++|+|++|.|.+.....|+++.+|++|+|++|.|.+..+..|..+.+|++|+|++|+|++ +... ...+|
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~l~~L  194 (597)
T 3oja_B          117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLS-LIPSL  194 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGG-GCTTC
T ss_pred             HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChh-hhhhh
Confidence            889999999999999999997766778999999999999999998888889999999999999999984 3211 11455


Q ss_pred             CEEEecCcccccc------------------CchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          182 DIIFLNHNWFRGS------------------IPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       182 ~~L~L~~n~l~~~------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      ++|++++|.+++.                  +...+ ..+|++|+|++|.+++.  ..|+++.+|++|+|++|.|.+.++
T Consensus       195 ~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~  271 (597)
T 3oja_B          195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY  271 (597)
T ss_dssp             SEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred             hhhhcccCccccccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH
Confidence            5555555544421                  11111 13588888999988864  678999999999999999998888


Q ss_pred             cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS  323 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  323 (629)
                      ..+.  .+.+|++|+|++|+|++ ++..+..+.+|++|+|++|.|.+ ++..+..+.+|++|+|++|.|.++.   +..+
T Consensus       272 ~~~~--~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~  344 (597)
T 3oja_B          272 HPFV--KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTH  344 (597)
T ss_dssp             GGGT--TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTT
T ss_pred             HHhc--CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhc
Confidence            8887  89999999999999995 55666789999999999999995 5667888999999999999998874   6778


Q ss_pred             CCCceecccCCcccccc
Q 043930          324 RDDVYFEEKGNCLAEME  340 (629)
Q Consensus       324 ~~L~~L~l~~N~l~~~~  340 (629)
                      .+|++|+|++|.|.+..
T Consensus       345 ~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          345 HTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCCSEEECCSSCEEHHH
T ss_pred             CCCCEEEeeCCCCCChh
Confidence            99999999999998654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.4e-28  Score=251.91  Aligned_cols=247  Identities=17%  Similarity=0.214  Sum_probs=213.7

Q ss_pred             EEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCC--chhhhhCCCCCcEEEcc
Q 043930           87 AMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP--FPTVALTWKRNLYLDLR  164 (629)
Q Consensus        87 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls  164 (629)
                      +.+++++++++. ++..+  ..+|++|+|++|++.+.....|.++.+|++|+|++|.|+..  +...+..+.+|++|+|+
T Consensus        10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            468999988865 44433  36899999999999976666789999999999999999843  35677889999999999


Q ss_pred             CCcCccCCCchhcc-CCCCEEEecCccccccCc-hhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc-
Q 043930          165 FNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIP-ETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG-  240 (629)
Q Consensus       165 ~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-  240 (629)
                      +|+++ .++..+.. .+|++|+|++|.+++... ..+.. .+|++|++++|.+.+.....|.++.+|++|+|++|.+.+ 
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            99998 56666555 899999999999986544 34433 689999999999998888889999999999999999986 


Q ss_pred             cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhh
Q 043930          241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECI  320 (629)
Q Consensus       241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l  320 (629)
                      .++..+.  .+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|++.....|.++.+|++|+|++|.|.+.....+
T Consensus       166 ~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          166 FLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             EECSCCT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cchhHHh--hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            4677776  79999999999999998878899999999999999999998877789999999999999999999988888


Q ss_pred             cCC-CCCceecccCCccccc
Q 043930          321 SGS-RDDVYFEEKGNCLAEM  339 (629)
Q Consensus       321 ~~l-~~L~~L~l~~N~l~~~  339 (629)
                      ..+ .+|++|+|++|.|++.
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECS
T ss_pred             HhhhccCCEEEccCCCeecc
Confidence            888 5999999999999753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=1.4e-28  Score=280.06  Aligned_cols=250  Identities=17%  Similarity=0.121  Sum_probs=109.2

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhh--CCCCCcEE
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVAL--TWKRNLYL  161 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L  161 (629)
                      .+|++|+|++|++.++.+..|+++++|++|+|++|++.+.....|.++.+|++|+|++|.+++.....+.  .+.+|++|
T Consensus        97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  176 (680)
T 1ziw_A           97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL  176 (680)
T ss_dssp             TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred             CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence            4455555555555444444455555555555555555444444444555555555555555444333332  23455555


Q ss_pred             EccCCcCccCCCchhcc-CCCCEEEecCccccccCchhh----hhhhhHHHHhcCCcccccCCccccCCCC--CcEEEcc
Q 043930          162 DLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETI----GESLARYIVLSSNNFTGCLPRSIGYMKE--LQEIILM  234 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~Ls  234 (629)
                      +|++|++++..+..+.. .+|+.|++.+|.+.+.....+    ...+|++|++++|.+.+..+..|.++..  |++|+|+
T Consensus       177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls  256 (680)
T 1ziw_A          177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS  256 (680)
T ss_dssp             ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred             ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence            55555554322222111 111111111111110000000    0022444445555555444444444432  5555555


Q ss_pred             CCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccc---------ccccccCCCCCcEE
Q 043930          235 ENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGF---------VSADICKLPHLLNF  305 (629)
Q Consensus       235 ~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~l~~l~~L~~L  305 (629)
                      +|++++..+..+.  .+.+|++|+|++|++++..+..|.++.+|++|+|++|.+.+.         ....|..+.+|++|
T Consensus       257 ~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L  334 (680)
T 1ziw_A          257 YNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL  334 (680)
T ss_dssp             TSCCCEECTTTTT--TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred             CCCcCccCccccc--CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence            5555544444443  455555555555555544444455555555555554433211         01133444555555


Q ss_pred             EecCCccCCcchhhhcCCCCCceecccCCc
Q 043930          306 TFSNNFFQGMAMECISGSRDDVYFEEKGNC  335 (629)
Q Consensus       306 ~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~  335 (629)
                      +|++|.+.++....|.++.+|++|++++|.
T Consensus       335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             ECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             ECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            555555555444444455555555554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.6e-28  Score=273.36  Aligned_cols=156  Identities=15%  Similarity=0.161  Sum_probs=110.6

Q ss_pred             hhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCc-ccccCCCCCCcEEEecCCcccccchHHhhcccCccce
Q 043930          203 LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPS-EIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL  281 (629)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  281 (629)
                      +|++|++++|.+.+.... |.++.+|++|+|++|.+.+..+. .+.  .+.+|++|+|++|.+++..+..|.++.+|++|
T Consensus       374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  450 (570)
T 2z63_A          374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  450 (570)
T ss_dssp             CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh--cCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence            455556666655543322 66677777777777777654442 333  67888888888888887777778888888888


Q ss_pred             eccccccc-ccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccccccCCC----CCCCCCCCCCC
Q 043930          282 DISDNMLT-GFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLP----TECYPVVSKPV  356 (629)
Q Consensus       282 ~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~----~~c~~~~~~p~  356 (629)
                      +|++|.+. +.++..|..+.+|++|+|++|+++++....|.++.+|++|+|++|.|++.....+.    .....+..+.+
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            88888887 45667788888888888888888888777888888888888888888776533221    13345666677


Q ss_pred             CCCCC
Q 043930          357 DCSKD  361 (629)
Q Consensus       357 ~Cs~~  361 (629)
                      .|++.
T Consensus       531 ~~~~~  535 (570)
T 2z63_A          531 DCSCP  535 (570)
T ss_dssp             CCCTT
T ss_pred             cCCCc
Confidence            77653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=2.4e-28  Score=284.22  Aligned_cols=303  Identities=15%  Similarity=0.140  Sum_probs=235.7

Q ss_pred             CcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCC--CCCCCCcCceecCCCCCCCcccEEEEEcCCCC
Q 043930           18 PNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWV--GTDVCQYNGVLCDVFIDNQERFVAMIDLNKAE   95 (629)
Q Consensus        18 ~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~   95 (629)
                      +++|.++.+|++|++++|.....          +..+.+..+....  ....|.+.++..+.+  ..+.+|+.|+|++|+
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~----------i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLT----------IDKEAFRNLPNLRILDLGSSKIYFLHPDAF--QGLFHLFELRLYFCG  108 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCE----------ECTTTTSSCTTCCEEECTTCCCCEECTTSS--CSCSSCCCEECTTCC
T ss_pred             hhHCcccccCeEEeCCCCCCccc----------cCHHHhcCCCCCCEEECCCCcCcccCHhHc--cCCcccCEeeCcCCC
Confidence            56788888888888888743211          0001111122221  122333443322222  256789999999999


Q ss_pred             ccccCchh--hhCCcCCCEEECCCCCCCccCh-hhhcCCCCCcEEEccCCcCCCCchhhhhCC--CCCcEEEccCCcCcc
Q 043930           96 IAAHLPPE--MGWLLDLIYFHANTNRLCGIIP-ETFANMHRLEEFDVSNNRLVGPFPTVALTW--KRNLYLDLRFNNFEG  170 (629)
Q Consensus        96 l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~  170 (629)
                      +.+.++..  |+++++|++|+|++|.+.+... ..|+++++|++|+|++|.|.+.....+..+  .+|++|+|++|.+.+
T Consensus       109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS  188 (844)
T ss_dssp             CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred             CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence            98866655  8999999999999999987644 679999999999999999998888888777  899999999999987


Q ss_pred             CCCchhcc-------CCCCEEEecCccccccCchhhhh---------------------------------------hhh
Q 043930          171 ELPPELFQ-------TGLDIIFLNHNWFRGSIPETIGE---------------------------------------SLA  204 (629)
Q Consensus       171 ~ip~~~~~-------~~L~~L~L~~n~l~~~~~~~~~~---------------------------------------~~L  204 (629)
                      .++..+..       ..|++|+|++|.+++.+...+..                                       .+|
T Consensus       189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L  268 (844)
T 3j0a_A          189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV  268 (844)
T ss_dssp             CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC
T ss_pred             ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCc
Confidence            66655433       34899999999776554433321                                       358


Q ss_pred             HHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930          205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS  284 (629)
Q Consensus       205 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  284 (629)
                      ++|+|++|.+.+.....|..+.+|++|+|++|+|.+..+..+.  .+.+|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus       269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            8899999999988889999999999999999999987777777  79999999999999998878899999999999999


Q ss_pred             cccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      +|.|.++....|.++.+|++|+|++|.|+++.     .+.+|+.|++++|.+..+
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l  396 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTL  396 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCC
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccc
Confidence            99999887778999999999999999998643     266777777777777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=274.63  Aligned_cols=159  Identities=14%  Similarity=0.129  Sum_probs=135.2

Q ss_pred             CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCC-ccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEE
Q 043930          179 TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLP-RSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVF  257 (629)
Q Consensus       179 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L  257 (629)
                      .+|++|+|++|.+.+.........+|++|++++|.+.+... ..|.++++|++|+|++|.+.+.++..+.  .+.+|++|
T Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L  450 (570)
T 2z63_A          373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVL  450 (570)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT--TCTTCCEE
T ss_pred             CccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh--cCCcCcEE
Confidence            45555555555555333331123579999999999987755 5789999999999999999988887777  79999999


Q ss_pred             EecCCccc-ccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          258 DIRSNKFH-GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       258 ~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      +|++|.++ +.++..|..+.+|++|+|++|++++..+..|.++.+|++|+|++|+|+++....|.++.+|++|++++|.+
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            99999997 56788899999999999999999998888999999999999999999999888899999999999999998


Q ss_pred             ccc
Q 043930          337 AEM  339 (629)
Q Consensus       337 ~~~  339 (629)
                      .+.
T Consensus       531 ~~~  533 (570)
T 2z63_A          531 DCS  533 (570)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=7.9e-28  Score=259.25  Aligned_cols=243  Identities=14%  Similarity=0.141  Sum_probs=166.8

Q ss_pred             EEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCc
Q 043930           88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNN  167 (629)
Q Consensus        88 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  167 (629)
                      .+++.++++.. ++..+.  .+|++|+|++|+|.+.....|.++.+|++|+|++|.|.+.....|.++.+|++|+|++|+
T Consensus        47 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           47 KVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             EEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             EEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            34444444432 333222  455566666666655555555566666666666666555444555556666666666666


Q ss_pred             CccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCc-ccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          168 FEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNN-FTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       168 l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      |+ .++...+.  .+|++|+|++|.|++.....+.. .+|++|+|++|+ +.......|.++.+|++|+|++|+|+ .++
T Consensus       124 l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~  201 (440)
T 3zyj_A          124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP  201 (440)
T ss_dssp             CS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred             CC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence            55 34333222  55666666666555433333333 356666666533 33333346888899999999999998 555


Q ss_pred             cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS  323 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  323 (629)
                      . +.  .+.+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++....|.++.+|++|+|++|+|+++..+.|..+
T Consensus       202 ~-~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          202 N-LT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             C-CT--TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             c-cC--CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            3 44  68899999999999998878889999999999999999998888888999999999999999999888888899


Q ss_pred             CCCceecccCCcccc
Q 043930          324 RDDVYFEEKGNCLAE  338 (629)
Q Consensus       324 ~~L~~L~l~~N~l~~  338 (629)
                      .+|++|+|++|.+.+
T Consensus       279 ~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          279 HHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEcCCCCccC
Confidence            999999999998864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=8.8e-28  Score=250.42  Aligned_cols=290  Identities=15%  Similarity=0.176  Sum_probs=223.7

Q ss_pred             CCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCC
Q 043930           15 GKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKA   94 (629)
Q Consensus        15 ~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n   94 (629)
                      ..++ .+.++.+|++|++++|++..... +..+.         .+... ....|.+.++..    ...+.+|++|+|++|
T Consensus        57 ~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~---------~L~~L-~L~~n~i~~~~~----~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           57 ASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLV---------KLTNL-YIGTNKITDISA----LQNLTNLRELYLNED  120 (347)
T ss_dssp             CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCT---------TCCEE-ECCSSCCCCCGG----GTTCTTCSEEECTTS
T ss_pred             ccch-hhhhcCCccEEEccCCccccchh-hhcCC---------cCCEE-EccCCcccCchH----HcCCCcCCEEECcCC
Confidence            3444 48889999999999998765322 11111         11111 112233333211    125678999999999


Q ss_pred             CccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCc
Q 043930           95 EIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPP  174 (629)
Q Consensus        95 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~  174 (629)
                      ++.+..  .+.++.+|++|+|++|.....+. .+.++.+|++|+|++|.+.+...  +..+.+|++|+|++|+++ .+..
T Consensus       121 ~i~~~~--~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~  194 (347)
T 4fmz_A          121 NISDIS--PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP  194 (347)
T ss_dssp             CCCCCG--GGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG
T ss_pred             cccCch--hhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc
Confidence            997753  28899999999999996654444 48999999999999999987533  889999999999999998 5555


Q ss_pred             hhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCC
Q 043930          175 ELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNL  254 (629)
Q Consensus       175 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L  254 (629)
                      .....+|++|++++|.+++... .....+|++|++++|++++...  +..+.+|++|+|++|.+++ + ..+.  .+.+|
T Consensus       195 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~--~l~~L  267 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVK--DLTKL  267 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGT--TCTTC
T ss_pred             ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHh--cCCCc
Confidence            3333899999999999986543 2233689999999999986543  8899999999999999984 3 3454  78999


Q ss_pred             cEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCC
Q 043930          255 TVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGN  334 (629)
Q Consensus       255 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N  334 (629)
                      ++|+|++|+|++.  ..+..+.+|++|+|++|.+++.....|.++.+|++|+|++|.+++...  +..+.+|++|++++|
T Consensus       268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ  343 (347)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred             CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhh
Confidence            9999999999864  468899999999999999998888889999999999999999998766  788999999999999


Q ss_pred             ccc
Q 043930          335 CLA  337 (629)
Q Consensus       335 ~l~  337 (629)
                      .|+
T Consensus       344 ~i~  346 (347)
T 4fmz_A          344 VIK  346 (347)
T ss_dssp             ---
T ss_pred             ccc
Confidence            886

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=7.9e-28  Score=260.16  Aligned_cols=226  Identities=15%  Similarity=0.151  Sum_probs=151.5

Q ss_pred             cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEE
Q 043930          108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIF  185 (629)
Q Consensus       108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~  185 (629)
                      .+|++|+|++|+|.+.....|.++.+|++|+|++|+|.+.....|.++.+|++|+|++|+|+ .++...+.  .+|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence            34555555555555444445555555555555555555444444555555555555555554 33333222  4555555


Q ss_pred             ecCccccccCchhhhh-hhhHHHHhcCCc-ccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc
Q 043930          186 LNHNWFRGSIPETIGE-SLARYIVLSSNN-FTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK  263 (629)
Q Consensus       186 L~~n~l~~~~~~~~~~-~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~  263 (629)
                      |++|.|++.....+.. .+|++|+|++|+ +.......|.++.+|++|+|++|+|+ .++ .+.  .+.+|++|+|++|+
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~--~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLT--PLVGLEELEMSGNH  229 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCT--TCTTCCEEECTTSC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-ccc--ccccccEEECcCCc
Confidence            5555554333323322 345555555532 33233346788889999999999988 444 344  68899999999999


Q ss_pred             ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930          264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      |++..+..|.++.+|++|+|++|+|.++....|.++.+|++|+|++|+|+++..+.|..+.+|++|+|++|.+.+
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            988888889999999999999999988878888889999999999999998888888889999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=2.6e-28  Score=270.62  Aligned_cols=256  Identities=17%  Similarity=0.192  Sum_probs=182.9

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      ..+|++|+|++|+|.+..+.+|+++++|++|+|++|++.+..+..|.++.+|++|+|++|+|++.....|.++.+|++|+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            45799999999999888888899999999999999999988888899999999999999999988777799999999999


Q ss_pred             ccCCcCcc-CCCchhcc-CCCCEEEecCccccccCc-hhhhh-hhhHHHHhcCCcccccCCccccC--------------
Q 043930          163 LRFNNFEG-ELPPELFQ-TGLDIIFLNHNWFRGSIP-ETIGE-SLARYIVLSSNNFTGCLPRSIGY--------------  224 (629)
Q Consensus       163 Ls~n~l~~-~ip~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~l~~~~~~~l~~--------------  224 (629)
                      |++|++++ .++..+.. .+|++|+|++|.+.+.++ ..+.. .+|++|++++|++.+.++..|++              
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            99999874 23344444 889999999998554554 34444 57888999998888777666654              


Q ss_pred             ----------CCCCcEEEccCCcccccC--Cccccc--------------------------------------------
Q 043930          225 ----------MKELQEIILMENQLSGCL--PSEIGS--------------------------------------------  248 (629)
Q Consensus       225 ----------l~~L~~L~Ls~n~l~~~~--p~~~~~--------------------------------------------  248 (629)
                                +.+|++|+|++|++++..  +..+..                                            
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~  264 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN  264 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred             cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence                      456666666666665421  000000                                            


Q ss_pred             ------------------------------------------CCCCCCcEEEecCCcccccchHHh-hcccCccceeccc
Q 043930          249 ------------------------------------------GEYKNLTVFDIRSNKFHGSVPQSF-ANLNNIMRLDISD  285 (629)
Q Consensus       249 ------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~  285 (629)
                                                                ..+.+|++|+|++|+++ .++..+ .++.+|++|+|++
T Consensus       265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~  343 (549)
T 2z81_A          265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE  343 (549)
T ss_dssp             CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred             ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence                                                      00123444444445444 333333 4677788888888


Q ss_pred             cccccccc---ccccCCCCCcEEEecCCccCCcch--hhhcCCCCCceecccCCccccc
Q 043930          286 NMLTGFVS---ADICKLPHLLNFTFSNNFFQGMAM--ECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       286 N~l~~~~~---~~l~~l~~L~~L~L~~N~l~~~~~--~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      |.+.+.++   ..+..+.+|++|+|++|+|+++..  ..+..+.+|++|++++|.|+.+
T Consensus       344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l  402 (549)
T 2z81_A          344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM  402 (549)
T ss_dssp             SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC
T ss_pred             CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC
Confidence            88776543   235667778888888887776643  4567777788888888877644

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=1e-27  Score=270.06  Aligned_cols=133  Identities=17%  Similarity=0.209  Sum_probs=95.4

Q ss_pred             CCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccc-ccchHHhhcccCccceecccccccccccccccCCCCCcEE
Q 043930          227 ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH-GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF  305 (629)
Q Consensus       227 ~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  305 (629)
                      +|+.+++++|.+.+.....+.  .+.+|++|+|++|++. +.++..|..+.+|++|+|++|+|+++.+..|.++.+|++|
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~--~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L  523 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  523 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccccccccccccccccccc--cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence            333334444444333333333  4567777777777643 3456677888889999999999988888888889999999


Q ss_pred             EecCCccCCcchhhhcCCCCCceecccCCccccccccCCCC-----CCCCCCCCCCCCCCC
Q 043930          306 TFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPT-----ECYPVVSKPVDCSKD  361 (629)
Q Consensus       306 ~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-----~c~~~~~~p~~Cs~~  361 (629)
                      +|++|+|+++....|.++++|++|+|++|.|+......+..     ....+..+++.|+|.
T Consensus       524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999998888888888999999999999988765543322     234677888888874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=7e-28  Score=267.94  Aligned_cols=113  Identities=15%  Similarity=0.213  Sum_probs=69.2

Q ss_pred             cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc--chHHhhcccCccceeccccccccccc-ccccCC
Q 043930          223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS--VPQSFANLNNIMRLDISDNMLTGFVS-ADICKL  299 (629)
Q Consensus       223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l  299 (629)
                      +.+.+|++|+|++|++++.++..+.  .+.+|++|+|++|+|++.  ++..|.++.+|++|+|++|.|.+.++ ..+..+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence            4556666666666666655555555  566677777777666642  23446666667777777776665233 335566


Q ss_pred             CCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       300 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      .+|++|+|++|.|++.....+.  .+|++|+|++|.|+.+
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i  465 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI  465 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC
T ss_pred             ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc
Confidence            6677777777766654433322  5677777777776644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1.1e-27  Score=260.21  Aligned_cols=237  Identities=20%  Similarity=0.247  Sum_probs=101.2

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccCh-------------------hhhcCCCCCcEEEccCCc
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIP-------------------ETFANMHRLEEFDVSNNR  143 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-------------------~~~~~l~~L~~L~Ls~n~  143 (629)
                      +.+|+.|+|++|++.+..  .+.++.+|++|+|++|++.+...                   ..|.++.+|++|+|++|.
T Consensus       111 l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          111 LTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK  188 (466)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence            445666666666554432  25555555555555555443210                   113344444555555554


Q ss_pred             CCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCcccc
Q 043930          144 LVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIG  223 (629)
Q Consensus       144 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  223 (629)
                      +.+.  ..+..+.+|++|+|++|++++. .......+|++|+|++|.+++. .......+|++|++++|.+.+...  +.
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccc-ccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hh
Confidence            4432  2244445555555555554422 1111114444455544444421 111111344445555554443322  44


Q ss_pred             CCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCc
Q 043930          224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLL  303 (629)
Q Consensus       224 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  303 (629)
                      ++.+|++|+|++|.+.+...  +.  .+.+|++|+|++|++++...  +..+.+|++|+|++|.+.+..+  +..+.+|+
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  334 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP--LA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ  334 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred             cCCCCCEEECCCCccCcccc--cc--CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence            44444445544444442211  22  34444444444444443221  3444444444444444443322  33444444


Q ss_pred             EEEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930          304 NFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       304 ~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      +|+|++|.++++  ..+.++.+|++|++++|.+.
T Consensus       335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             EeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence            444444444433  23344444444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=7.5e-28  Score=261.42  Aligned_cols=243  Identities=18%  Similarity=0.213  Sum_probs=201.6

Q ss_pred             CcccEEEEEcCCCCccccC-------------------chhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCC
Q 043930           82 QERFVAMIDLNKAEIAAHL-------------------PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN  142 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~-------------------p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  142 (629)
                      .+.+|+.|+|++|.+.+..                   ...++++++|++|+|++|++.+.  ..+.++.+|++|+|++|
T Consensus       132 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n  209 (466)
T 1o6v_A          132 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN  209 (466)
T ss_dssp             TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             CCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence            4566777777777665421                   12367788999999999999864  45899999999999999


Q ss_pred             cCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccc
Q 043930          143 RLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSI  222 (629)
Q Consensus       143 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  222 (629)
                      .+.+..+  +..+.+|++|+|++|+++ .+.......+|++|+|++|.+++... .....+|++|++++|.+.+...  +
T Consensus       210 ~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~  283 (466)
T 1o6v_A          210 QISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--L  283 (466)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--G
T ss_pred             ccccccc--ccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--c
Confidence            9998644  778999999999999998 45433333899999999999986544 3333689999999999986543  8


Q ss_pred             cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCC
Q 043930          223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL  302 (629)
Q Consensus       223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  302 (629)
                      ..+.+|++|+|++|++++...  +.  .+.+|++|+|++|++++..+  +..+.+|++|+|++|.+++.  ..+.++.+|
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L  355 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDISP--IS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI  355 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCCGG--GG--GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             cCCCccCeEEcCCCcccCchh--hc--CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence            899999999999999985433  44  78999999999999997655  78999999999999999985  578999999


Q ss_pred             cEEEecCCccCCcchhhhcCCCCCceecccCCcccccccc
Q 043930          303 LNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQ  342 (629)
Q Consensus       303 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  342 (629)
                      ++|+|++|++.+..+  +..+.+|++|++++|.+++....
T Consensus       356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~  393 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN  393 (466)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCBC
T ss_pred             CEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCchh
Confidence            999999999998876  88999999999999999875543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1.3e-28  Score=273.11  Aligned_cols=307  Identities=14%  Similarity=0.169  Sum_probs=188.4

Q ss_pred             CCCCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCC--CCCCCCcCceecCCCCCCCcccEEEEE
Q 043930           13 KDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWV--GTDVCQYNGVLCDVFIDNQERFVAMID   90 (629)
Q Consensus        13 ~~~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~c~~~g~~~~~~~~~~~~~L~~L~   90 (629)
                      ...+|++.+.  .+|++|++++|++.....           +.+..+....  ....|.+.++.-+.+  ..+.+|++||
T Consensus        16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~   80 (549)
T 2z81_A           16 SFTSIPSGLT--AAMKSLDLSFNKITYIGH-----------GDLRACANLQVLILKSSRINTIEGDAF--YSLGSLEHLD   80 (549)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCEECS-----------STTSSCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEE
T ss_pred             ccccccccCC--CCccEEECcCCccCccCh-----------hhhhcCCcccEEECCCCCcCccChhhc--cccccCCEEE
Confidence            4456776654  688999999988654310           0011111111  112233333321111  1456788888


Q ss_pred             cCCCCccccCchhhhCCcCCCEEECCCCCCCcc-ChhhhcCCCCCcEEEccCCcCCCCch-hhhhCCCCCcEEEccCCcC
Q 043930           91 LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGI-IPETFANMHRLEEFDVSNNRLVGPFP-TVALTWKRNLYLDLRFNNF  168 (629)
Q Consensus        91 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l  168 (629)
                      |++|++.+..+..|+++++|++|+|++|++.+. ++..|+++.+|++|+|++|.+.+.++ ..+.++.+|++|+|++|++
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            888888877777788888888888888888753 45567888888888888887444343 5677888888888888888


Q ss_pred             ccCCCchhcc-CCCCEEEecCccccccCchhhh--hhhhHHHHhcCCcccccC--C-ccc--------------------
Q 043930          169 EGELPPELFQ-TGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSSNNFTGCL--P-RSI--------------------  222 (629)
Q Consensus       169 ~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~l~~n~l~~~~--~-~~l--------------------  222 (629)
                      ++.++..+.. .+|++|++++|.+. .++..+.  ..+|++|++++|++.+..  . ...                    
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred             cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence            8666666665 77888888888775 3333332  257888899888877531  0 000                    


Q ss_pred             --------cC-----------------------------------------------------------CCCCcEEEccC
Q 043930          223 --------GY-----------------------------------------------------------MKELQEIILME  235 (629)
Q Consensus       223 --------~~-----------------------------------------------------------l~~L~~L~Ls~  235 (629)
                              ..                                                           +.+|++|+|++
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~  319 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN  319 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred             HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence                    00                                                           12344444444


Q ss_pred             CcccccCCcccccCCCCCCcEEEecCCcccccchH---HhhcccCccceeccccccccccc--ccccCCCCCcEEEecCC
Q 043930          236 NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ---SFANLNNIMRLDISDNMLTGFVS--ADICKLPHLLNFTFSNN  310 (629)
Q Consensus       236 n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~~L~L~~N  310 (629)
                      |++. .++..++. .+.+|++|+|++|++++.++.   .+..+.+|++|+|++|+|++...  ..+..+.+|++|+|++|
T Consensus       320 n~l~-~ip~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          320 SKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             SCCC-CCCHHHHH-HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred             Cccc-cCCHHHHh-cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence            4443 34443321 466777777777777654432   24566677777777777765421  34666677777777777


Q ss_pred             ccCCcchhhhcCCCCCceecccCCcccc
Q 043930          311 FFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       311 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      +|+++ +..+..+.+|++|++++|.|.+
T Consensus       398 ~l~~l-p~~~~~~~~L~~L~Ls~N~l~~  424 (549)
T 2z81_A          398 TFHPM-PDSCQWPEKMRFLNLSSTGIRV  424 (549)
T ss_dssp             CCCCC-CSCCCCCTTCCEEECTTSCCSC
T ss_pred             CCccC-ChhhcccccccEEECCCCCccc
Confidence            76643 3445566666666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.1e-27  Score=254.54  Aligned_cols=229  Identities=16%  Similarity=0.149  Sum_probs=202.3

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      ...+|+.|+|++|+|.++.+..|.++.+|++|+|++|+|.+.....|.++.+|++|+|++|+|++.....|..+.+|++|
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence            34679999999999999989999999999999999999998888999999999999999999998777778999999999


Q ss_pred             EccCCcCccCCCchhcc--CCCCEEEecCccccccCch-hhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCc
Q 043930          162 DLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPE-TIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQ  237 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~-~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  237 (629)
                      +|++|+|+ .++...+.  .+|++|+|++|...+.+.. .+.. .+|++|+|++|++.+.  ..+..+.+|++|+|++|+
T Consensus       153 ~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSC
T ss_pred             ECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCc
Confidence            99999998 56655544  8999999999654445543 3433 5899999999999864  358889999999999999


Q ss_pred             ccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCc
Q 043930          238 LSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM  315 (629)
Q Consensus       238 l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  315 (629)
                      |++..+..+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+++....|..+.+|++|+|++|.+...
T Consensus       230 l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          230 FPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             CSEECGGGGT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             CcccCccccc--CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            9987788887  899999999999999988888999999999999999999988778889999999999999987643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=4.2e-27  Score=254.21  Aligned_cols=282  Identities=15%  Similarity=0.136  Sum_probs=147.1

Q ss_pred             CcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCCcc
Q 043930           18 PNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIA   97 (629)
Q Consensus        18 ~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~   97 (629)
                      ...++++.+|++|+++++++.+.. ++..+...         .. .....|.+.++.     ...+.+|+.|+|++|+|.
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L---------~~-L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~l~   98 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGL---------TK-LICTSNNITTLD-----LSQNTNLTYLACDSNKLT   98 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTC---------SE-EECCSSCCSCCC-----CTTCTTCSEEECCSSCCS
T ss_pred             ccChhHcCCCCEEEccCCCcccCh-hhcccCCC---------CE-EEccCCcCCeEc-----cccCCCCCEEECcCCCCc
Confidence            345777788888888877765431 11111111         00 011122222221     113455666666666665


Q ss_pred             ccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhc
Q 043930           98 AHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF  177 (629)
Q Consensus        98 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~  177 (629)
                      +.   .++++.+|++|+|++|++++. +  |+++.+|++|+|++|+|++.   .+..+.+|++|+|++|++.+.+  .+.
T Consensus        99 ~~---~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~  167 (457)
T 3bz5_A           99 NL---DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVT  167 (457)
T ss_dssp             CC---CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCT
T ss_pred             ee---ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccc
Confidence            53   255566666666666666542 1  55566666666666666552   2445555555555555433333  111


Q ss_pred             c-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcE
Q 043930          178 Q-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV  256 (629)
Q Consensus       178 ~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~  256 (629)
                      . .+|++|+|++|.+++. + .....+|++|++++|++++.   .|+.+.+|++|+|++|+|++ ++  +.  .+.+|++
T Consensus       168 ~l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~--~l~~L~~  237 (457)
T 3bz5_A          168 PQTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT--PLTQLTY  237 (457)
T ss_dssp             TCTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT--TCTTCSE
T ss_pred             cCCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc--ccCCCCE
Confidence            1 4555555555555432 1 11113444445555544432   24444444455554444443 22  22  3444444


Q ss_pred             EEecCCcccccchHH-----------------------------hhcccCccceecccccccccccc--------cccCC
Q 043930          257 FDIRSNKFHGSVPQS-----------------------------FANLNNIMRLDISDNMLTGFVSA--------DICKL  299 (629)
Q Consensus       257 L~Ls~n~l~~~~~~~-----------------------------~~~l~~L~~L~Ls~N~l~~~~~~--------~l~~l  299 (629)
                      |+|++|+|++.....                             +..+.+|++|+|++|.+.+.++.        .+.++
T Consensus       238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~  317 (457)
T 3bz5_A          238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN  317 (457)
T ss_dssp             EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred             EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhc
Confidence            444444444322211                             23456677777777765443322        24556


Q ss_pred             CCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       300 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      .+|++|+|++|+|+++   .+.++++|++|++++|+|+++
T Consensus       318 ~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          318 PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF  354 (457)
T ss_dssp             TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC
T ss_pred             ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc
Confidence            7888899999988885   378888899999999988763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=4e-27  Score=265.24  Aligned_cols=132  Identities=17%  Similarity=0.220  Sum_probs=114.1

Q ss_pred             HHHhcCCcccccCCccccCCCCCcEEEccCCcccc-cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930          206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG-CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS  284 (629)
Q Consensus       206 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  284 (629)
                      .+++++|.+.+.....+..+.+|++|+|++|.+.+ .++..+.  .+.+|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus       449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~--~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls  526 (635)
T 4g8a_A          449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  526 (635)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCchhhh--hccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence            34445555555556667788999999999998653 4566666  79999999999999998889999999999999999


Q ss_pred             cccccccccccccCCCCCcEEEecCCccCCcchhhhcCC-CCCceecccCCccccc
Q 043930          285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS-RDDVYFEEKGNCLAEM  339 (629)
Q Consensus       285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~~~  339 (629)
                      +|+|+++....|.++.+|++|||++|+|+++..+.|..+ .+|++|+|++|.|.+.
T Consensus       527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            999999888889999999999999999999999999888 7899999999998753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.5e-27  Score=237.51  Aligned_cols=222  Identities=16%  Similarity=0.188  Sum_probs=132.3

Q ss_pred             EEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCC
Q 043930           87 AMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN  166 (629)
Q Consensus        87 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  166 (629)
                      +.++++++++.. ++..  ...+|++|+|++|+|.+.....|.++.+|++|+|++|.|++..+..|..+.+|++|+|++|
T Consensus        14 ~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            445566665543 2322  2456677777777766655556666777777777777666655566666677777777776


Q ss_pred             c-CccCC-Cchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930          167 N-FEGEL-PPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL  242 (629)
Q Consensus       167 ~-l~~~i-p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  242 (629)
                      + ++ .+ +..+.. .+|++|+|++|.+++..+..+.. .+|++|++++|++.+.....|+++.+|++|+|++|+|++..
T Consensus        91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            5 44 33 333322 56666666666666443333332 34444555555554444445666666666666666666433


Q ss_pred             CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930          243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      ...+.  .+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|+++....|.++.+|++|+|++|.+..
T Consensus       170 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          170 ERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             HHHhc--CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            33344  56666666666666666556666666666666666666666555556666666666666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4.2e-27  Score=238.38  Aligned_cols=238  Identities=18%  Similarity=0.175  Sum_probs=200.2

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCc-CCCCchhhhhCCCCCcE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNR-LVGPFPTVALTWKRNLY  160 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~  160 (629)
                      ...+|+.|+|++|+|.+.....|.++.+|++|+|++|++.+..+..|.++.+|++|+|++|. +.+..+..+..+.+|++
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            45679999999999999888889999999999999999998888899999999999999997 77766888999999999


Q ss_pred             EEccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930          161 LDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL  238 (629)
Q Consensus       161 L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  238 (629)
                      |+|++|++++..+..+.. .+|++|+|++|.+++.....+.. .+|++|+|++|++++.....|.++.+|++|+|++|.|
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            999999998544554444 89999999999999766665654 5899999999999977777899999999999999999


Q ss_pred             cccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchh
Q 043930          239 SGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAME  318 (629)
Q Consensus       239 ~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  318 (629)
                      ++..+..+.  .+.+|++|+|++|+|++.....|..+.+|++|+|++|.+....... .-+..|+.+++..+.+....+.
T Consensus       190 ~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          190 AHVHPHAFR--DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             CEECTTTTT--TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             cccCHhHcc--CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence            988788887  7999999999999999887788999999999999999987532211 1112345555666777666666


Q ss_pred             hhcC
Q 043930          319 CISG  322 (629)
Q Consensus       319 ~l~~  322 (629)
                      .+.+
T Consensus       267 ~l~g  270 (285)
T 1ozn_A          267 RLAG  270 (285)
T ss_dssp             GGTT
T ss_pred             HhCC
Confidence            5544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=6.8e-29  Score=254.99  Aligned_cols=246  Identities=16%  Similarity=0.088  Sum_probs=191.6

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCC-ccChhhhc-------CCCCCcEEEccCCcCCCCchhhh--
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLC-GIIPETFA-------NMHRLEEFDVSNNRLVGPFPTVA--  152 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~l--  152 (629)
                      ..+|+.|++++|.+  .++..+...  |++|+|++|++. +.++..+.       ++.+|++|+|++|+|++.++..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            45677888888988  667766654  888899999884 34555554       78999999999999988777765  


Q ss_pred             hCCCCCcEEEccCCcCccCCCchhcc------CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCccccc--CCcc--
Q 043930          153 LTWKRNLYLDLRFNNFEGELPPELFQ------TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGC--LPRS--  221 (629)
Q Consensus       153 ~~l~~L~~L~Ls~n~l~~~ip~~~~~------~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~--~~~~--  221 (629)
                      ..+.+|++|+|++|+|++. +..+..      .+|++|+|++|.|++..+..++. .+|++|+|++|++.+.  +...  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            8899999999999999854 544432      68999999999998777666655 5799999999987754  2223  


Q ss_pred             ccCCCCCcEEEccCCcccc--cCCcccccCCCCCCcEEEecCCcccccch-HHhhcccCccceecccccccccccccccC
Q 043930          222 IGYMKELQEIILMENQLSG--CLPSEIGSGEYKNLTVFDIRSNKFHGSVP-QSFANLNNIMRLDISDNMLTGFVSADICK  298 (629)
Q Consensus       222 l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  298 (629)
                      ++++.+|++|+|++|+|++  .+...+. ..+.+|++|+|++|+|++..+ ..+..+.+|++|+|++|+|+. ++..+. 
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~-  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALA-AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP-  273 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHH-HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSCC-
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHH-hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhcc-
Confidence            3788999999999999873  2222222 167899999999999987663 455668899999999999984 565555 


Q ss_pred             CCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          299 LPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       299 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                       .+|++|||++|+|+++ +. +..+.+|++|+|++|.|++.
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence             7899999999999987 33 88899999999999998754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.2e-27  Score=246.37  Aligned_cols=237  Identities=17%  Similarity=0.163  Sum_probs=170.3

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      ..+|+.|+|++|+|.+..+..|+++.+|++|+|++|++.+...  |..+.+|++|+|++|.|++     +..+.+|++|+
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLH  105 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEEE
Confidence            4467888888888877777778888888888888888776543  7778888888888887765     23447788888


Q ss_pred             ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccc-cCCCCCcEEEccCCcccc
Q 043930          163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSI-GYMKELQEIILMENQLSG  240 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~  240 (629)
                      |++|+|++. .... ..+|++|+|++|.+++.....++. .+|++|+|++|.+.+.....| ..+.+|++|+|++|.|++
T Consensus       106 l~~n~l~~~-~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          106 AANNNISRV-SCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CCSSCCSEE-EECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCCccCCc-Cccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            888887732 2222 256888888888887655545544 467888888888876655555 367788888888888874


Q ss_pred             cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccC-Ccchhh
Q 043930          241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ-GMAMEC  319 (629)
Q Consensus       241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~  319 (629)
                      . ... .  .+.+|++|+|++|+|++. +..|..+.+|++|+|++|.|++ ++..+..+.+|++|+|++|.+. +.....
T Consensus       184 ~-~~~-~--~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~  257 (317)
T 3o53_A          184 V-KGQ-V--VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (317)
T ss_dssp             E-ECC-C--CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred             c-ccc-c--ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence            3 222 2  467888888888888743 3447778888888888888875 4566777788888888888887 566677


Q ss_pred             hcCCCCCceecccCC
Q 043930          320 ISGSRDDVYFEEKGN  334 (629)
Q Consensus       320 l~~l~~L~~L~l~~N  334 (629)
                      +..+.+|+.|++.++
T Consensus       258 ~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          258 FSKNQRVQTVAKQTV  272 (317)
T ss_dssp             HHTCHHHHHHHHHHH
T ss_pred             HhccccceEEECCCc
Confidence            777788888877743

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=9.3e-27  Score=250.88  Aligned_cols=228  Identities=20%  Similarity=0.226  Sum_probs=201.4

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      ...+++.|+|++|+|.++....|.++++|++|+|++|+|.++....|.++.+|++|+|++|+|++.....|..+.+|++|
T Consensus        62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            44678999999999999888999999999999999999998888899999999999999999998777789999999999


Q ss_pred             EccCCcCccCCCchhcc--CCCCEEEecCccccccCch-hhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCc
Q 043930          162 DLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPE-TIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQ  237 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~-~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  237 (629)
                      +|++|+|+ .++...+.  .+|++|+|++|...+.+.. .+.. .+|++|+|++|++++ ++ .|..+.+|++|+|++|+
T Consensus       142 ~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          142 WLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNH  218 (440)
T ss_dssp             ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSC
T ss_pred             eCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCc
Confidence            99999998 55554444  8999999999655445443 3443 589999999999984 44 58889999999999999


Q ss_pred             ccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930          238 LSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       238 l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      |++..+..+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+++....|..+.+|++|+|++|.+..
T Consensus       219 l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          219 LSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             cCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            9977787877  89999999999999998888889999999999999999998887888999999999999998864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.9e-27  Score=244.85  Aligned_cols=241  Identities=16%  Similarity=0.127  Sum_probs=206.9

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL  163 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  163 (629)
                      .+++.++++.+++...+...+..+.+|++|+|++|+|.+..+..|.++.+|++|+|++|+|++...  +..+.+|++|+|
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            458888999999877766677788899999999999998888999999999999999999987544  889999999999


Q ss_pred             cCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      ++|+|+ .+.   ...+|++|+|++|.|++.....+  .+|++|++++|++++.....|+.+.+|++|+|++|.|++...
T Consensus        88 s~n~l~-~l~---~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           88 NNNYVQ-ELL---VGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             CSSEEE-EEE---ECTTCCEEECCSSCCSEEEECCC--SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             cCCccc-ccc---CCCCcCEEECCCCccCCcCcccc--CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            999998 333   22899999999999987654433  469999999999998878889999999999999999997666


Q ss_pred             cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS  323 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  323 (629)
                      ..+.. .+.+|++|+|++|+|++. . .+..+.+|++|+|++|+|+++. ..|..+.+|++|+|++|.|+++ ...+..+
T Consensus       162 ~~~~~-~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~l-~~~~~~l  236 (317)
T 3o53_A          162 AELAA-SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLI-EKALRFS  236 (317)
T ss_dssp             GGGGG-GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEE-CTTCCCC
T ss_pred             HHHhh-ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccch-hhHhhcC
Confidence            66542 689999999999999854 2 3345899999999999999754 4588999999999999999965 5568889


Q ss_pred             CCCceecccCCccc
Q 043930          324 RDDVYFEEKGNCLA  337 (629)
Q Consensus       324 ~~L~~L~l~~N~l~  337 (629)
                      .+|++|++++|.+.
T Consensus       237 ~~L~~L~l~~N~~~  250 (317)
T 3o53_A          237 QNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTCCEEECTTCCCB
T ss_pred             CCCCEEEccCCCcc
Confidence            99999999999998

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.9e-26  Score=239.63  Aligned_cols=266  Identities=14%  Similarity=0.157  Sum_probs=216.6

Q ss_pred             EEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcC
Q 043930           89 IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNF  168 (629)
Q Consensus        89 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  168 (629)
                      .++++++++. ++..+.  .+|++|+|++|+|.+.....|.++.+|++|+|++|+|++.....|.++.+|++|+|++|+|
T Consensus        36 c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           36 CKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             EECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence            7889998865 555444  5899999999999987777899999999999999999987778899999999999999999


Q ss_pred             ccCCCchhcc--CCCCEEEecCccccccCc-hhhhh-hhhHHHHhcCCc-ccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          169 EGELPPELFQ--TGLDIIFLNHNWFRGSIP-ETIGE-SLARYIVLSSNN-FTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       169 ~~~ip~~~~~--~~L~~L~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      + .++...+.  .+|++|+|++|.+++... ..+.. .+|++|++++|+ +.+.....|+++++|++|+|++|++++..+
T Consensus       113 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             S-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             C-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            8 67666443  899999999999985433 24443 689999999994 676667889999999999999999998878


Q ss_pred             cccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccccccc---CCCCCcEEEecCCccCCc----c
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADIC---KLPHLLNFTFSNNFFQGM----A  316 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~l~~L~~L~L~~N~l~~~----~  316 (629)
                      ..+.  .+.+|++|+|++|+++......+..+.+|++|+|++|.+++.....+.   .+..|+.++|++|.+.+.    +
T Consensus       192 ~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          192 KSLK--SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             TTTT--TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             HHHh--ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence            8887  799999999999999854444456789999999999999986544433   467899999999999874    4


Q ss_pred             hhhhcCCCCCceecccCCccccccccCC----CCCCCCCCCCCCCCCC
Q 043930          317 MECISGSRDDVYFEEKGNCLAEMEYQKL----PTECYPVVSKPVDCSK  360 (629)
Q Consensus       317 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~----~~~c~~~~~~p~~Cs~  360 (629)
                      .+.+.++.+|++|+|++|.|+......+    ......+..+.+.|++
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            5668899999999999999997654322    1233466677777765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.3e-25  Score=225.65  Aligned_cols=217  Identities=18%  Similarity=0.274  Sum_probs=173.1

Q ss_pred             CCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcC
Q 043930           65 TDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL  144 (629)
Q Consensus        65 ~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  144 (629)
                      .++|.|.|+.|...     ..++.+++++++++. ++..+.  .+|++|+|++|+|.+.....|.++.+|++|+|++|.|
T Consensus         2 ~~~C~~~~~~C~c~-----~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l   73 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-----NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL   73 (270)
T ss_dssp             CCCBGGGTCSBEEE-----TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC
T ss_pred             CccCCCCCCCCEeC-----CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc
Confidence            47899999999743     346789999999975 554443  6899999999999987777899999999999999999


Q ss_pred             CCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccc
Q 043930          145 VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSI  222 (629)
Q Consensus       145 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  222 (629)
                      ++.....|..+.+|++|+|++|+|+ .++...+.  .+|++|+|++|.+++                       .....|
T Consensus        74 ~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~  129 (270)
T 2o6q_A           74 QTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-----------------------LPPRVF  129 (270)
T ss_dssp             SCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCC-----------------------CCTTTT
T ss_pred             CeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCe-----------------------eCHHHh
Confidence            8866666788999999999999998 55554443  778888887777663                       223456


Q ss_pred             cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCC
Q 043930          223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL  302 (629)
Q Consensus       223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  302 (629)
                      .++.+|++|+|++|+|++.....+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++|.|+++....|..+.+|
T Consensus       130 ~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (270)
T 2o6q_A          130 DSLTKLTYLSLGYNELQSLPKGVFD--KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL  207 (270)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CcCcCCCEEECCCCcCCccCHhHcc--CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence            7788999999999998854444455  78899999999999887666678888899999999999887766678888899


Q ss_pred             cEEEecCCccCCc
Q 043930          303 LNFTFSNNFFQGM  315 (629)
Q Consensus       303 ~~L~L~~N~l~~~  315 (629)
                      ++|+|++|.+...
T Consensus       208 ~~L~l~~N~~~c~  220 (270)
T 2o6q_A          208 KMLQLQENPWDCT  220 (270)
T ss_dssp             CEEECCSSCBCCS
T ss_pred             CEEEecCCCeeCC
Confidence            9999999887643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=3e-28  Score=263.98  Aligned_cols=259  Identities=15%  Similarity=0.083  Sum_probs=160.0

Q ss_pred             cccEEEEEcCCCCccccCchhhhC-----CcCCCEEECCCCCCCcc----ChhhhcCCCCCcEEEccCCcCCCCchhhhh
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGW-----LLDLIYFHANTNRLCGI----IPETFANMHRLEEFDVSNNRLVGPFPTVAL  153 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~  153 (629)
                      +.+|+.|+|++|.+.+.....+..     +.+|++|+|++|++++.    +...|..+.+|++|+|++|.+.+.....+.
T Consensus       112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  191 (461)
T 1z7x_W          112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC  191 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence            345555666665554432222221     33466666666655542    234445556666666666665543222222


Q ss_pred             -----CCCCCcEEEccCCcCccC----CCchhcc-CCCCEEEecCccccccCchhhh------hhhhHHHHhcCCccccc
Q 043930          154 -----TWKRNLYLDLRFNNFEGE----LPPELFQ-TGLDIIFLNHNWFRGSIPETIG------ESLARYIVLSSNNFTGC  217 (629)
Q Consensus       154 -----~l~~L~~L~Ls~n~l~~~----ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~  217 (629)
                           .+.+|++|+|++|++++.    +...+.. .+|++|+|++|.+++.....+.      ..+|++|++++|.+++.
T Consensus       192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~  271 (461)
T 1z7x_W          192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK  271 (461)
T ss_dssp             HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH
Confidence                 244666666666666532    1222222 6677777777766643322221      23577777777777653


Q ss_pred             ----CCccccCCCCCcEEEccCCcccccCCccccc---CCCCCCcEEEecCCccccc----chHHhhcccCccceecccc
Q 043930          218 ----LPRSIGYMKELQEIILMENQLSGCLPSEIGS---GEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDN  286 (629)
Q Consensus       218 ----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~---~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N  286 (629)
                          +...|.++++|++|+|++|.|.+.....+..   ....+|++|+|++|.+++.    +...+..+.+|++|+|++|
T Consensus       272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence                4555666778888888888776443322221   1235888888888888765    4556667789999999999


Q ss_pred             cccccccccccC-----CCCCcEEEecCCccCC----cchhhhcCCCCCceecccCCccccccc
Q 043930          287 MLTGFVSADICK-----LPHLLNFTFSNNFFQG----MAMECISGSRDDVYFEEKGNCLAEMEY  341 (629)
Q Consensus       287 ~l~~~~~~~l~~-----l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~~~  341 (629)
                      .|++.....+..     +.+|++|+|++|.+++    .....+..+++|++|+|++|.|++...
T Consensus       352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~  415 (461)
T 1z7x_W          352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  415 (461)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence            888765444432     6789999999999986    556677788999999999999887643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=9.1e-26  Score=233.22  Aligned_cols=205  Identities=16%  Similarity=0.221  Sum_probs=175.3

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhC-------
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALT-------  154 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-------  154 (629)
                      .+.+|++|+|++|+|. .++..|+++.+|++|+|++|+|. .++..|.++.+|++|+|++|++.+.++..+..       
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            4678999999999998 78899999999999999999999 67889999999999999999888888877654       


Q ss_pred             --CCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEE
Q 043930          155 --WKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEI  231 (629)
Q Consensus       155 --l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  231 (629)
                        +.+|++|+|++|+|+ .++..+.. .+|++|+|++|.+++                        ++..|+++.+|++|
T Consensus       180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~------------------------l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA------------------------LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC------------------------CCGGGGGCTTCCEE
T ss_pred             ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc------------------------CchhhccCCCCCEE
Confidence              999999999999998 88887766 899999999998873                        22346677888888


Q ss_pred             EccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCc
Q 043930          232 ILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF  311 (629)
Q Consensus       232 ~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~  311 (629)
                      +|++|++.+.++..+.  .+.+|++|+|++|++.+.++..|.++.+|++|+|++|.+.+.++..|.++.+|+.+++..|.
T Consensus       235 ~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFG--GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             ECTTCTTCCBCCCCTT--CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             ECcCCcchhhhHHHhc--CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            8888888888887777  78888888888888888888888888888888888888888888888888888888888766


Q ss_pred             cCCc
Q 043930          312 FQGM  315 (629)
Q Consensus       312 l~~~  315 (629)
                      +...
T Consensus       313 ~~~l  316 (328)
T 4fcg_A          313 QAQL  316 (328)
T ss_dssp             SCC-
T ss_pred             HHHH
Confidence            5543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.7e-26  Score=251.53  Aligned_cols=235  Identities=17%  Similarity=0.169  Sum_probs=197.9

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      ..+|+.|+|++|.|.+..+..|+.+.+|++|+|++|.|.+..+  |..+.+|++|+|++|.|++     +....+|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCEEE
Confidence            4579999999999999888899999999999999999987654  8999999999999999886     33448999999


Q ss_pred             ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCcccc-CCCCCcEEEccCCcccc
Q 043930          163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIG-YMKELQEIILMENQLSG  240 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~  240 (629)
                      |++|+|++... .. ..+|++|+|++|.|++..+..++. .+|++|+|++|.+++.++..|. .+.+|++|+|++|.|++
T Consensus       106 L~~N~l~~~~~-~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          106 AANNNISRVSC-SR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CCSSCCCCEEE-CC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CcCCcCCCCCc-cc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            99999984333 22 278999999999999877766665 5799999999999988777776 78999999999999985


Q ss_pred             cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccC-Ccchhh
Q 043930          241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ-GMAMEC  319 (629)
Q Consensus       241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~  319 (629)
                      . .. +.  .+.+|++|+|++|+|++... .|..+.+|++|+|++|.|++ ++..+..+.+|+.|+|++|.+. +.....
T Consensus       184 ~-~~-~~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          184 V-KG-QV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             E-EC-CC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             c-cc-cc--cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            5 22 22  58899999999999996544 58899999999999999997 5667888999999999999998 556677


Q ss_pred             hcCCCCCceeccc
Q 043930          320 ISGSRDDVYFEEK  332 (629)
Q Consensus       320 l~~l~~L~~L~l~  332 (629)
                      +..+..|+.|++.
T Consensus       258 ~~~l~~L~~l~~~  270 (487)
T 3oja_A          258 FSKNQRVQTVAKQ  270 (487)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HHhCCCCcEEecc
Confidence            8888888888875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.93  E-value=2.1e-26  Score=241.60  Aligned_cols=252  Identities=15%  Similarity=0.136  Sum_probs=182.3

Q ss_pred             EEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccCh----hhhcCCC-CCcEEEccCCcCCCCchhhhhCC-----CC
Q 043930           88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIP----ETFANMH-RLEEFDVSNNRLVGPFPTVALTW-----KR  157 (629)
Q Consensus        88 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-----~~  157 (629)
                      .++|++|++.+.++..+...++|++|+|++|+|.+...    ..|.++. +|++|+|++|+|++.....+..+     .+
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35777888888777777777778888888888876655    6677777 78888888888877666666554     78


Q ss_pred             CcEEEccCCcCccCCCchhcc------CCCCEEEecCccccccCchhhhh------hhhHHHHhcCCcccccC----Ccc
Q 043930          158 NLYLDLRFNNFEGELPPELFQ------TGLDIIFLNHNWFRGSIPETIGE------SLARYIVLSSNNFTGCL----PRS  221 (629)
Q Consensus       158 L~~L~Ls~n~l~~~ip~~~~~------~~L~~L~L~~n~l~~~~~~~~~~------~~L~~L~l~~n~l~~~~----~~~  221 (629)
                      |++|+|++|+|++.....+..      .+|++|+|++|.|++.....+..      .+|++|+|++|.+++..    ...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            888888888887555443332      57888888888887666555543      37888888888887543    333


Q ss_pred             ccCCC-CCcEEEccCCcccccCCccccc--CCC-CCCcEEEecCCccccc----chHHhhc-ccCccceecccccccccc
Q 043930          222 IGYMK-ELQEIILMENQLSGCLPSEIGS--GEY-KNLTVFDIRSNKFHGS----VPQSFAN-LNNIMRLDISDNMLTGFV  292 (629)
Q Consensus       222 l~~l~-~L~~L~Ls~n~l~~~~p~~~~~--~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~  292 (629)
                      |..+. +|++|+|++|+|++.....+..  ..+ .+|++|||++|.|++.    +...+.. ..+|++|+|++|.|++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            44554 8999999999988655433321  134 5899999999998864    3445555 358999999999998754


Q ss_pred             c----ccccCCCCCcEEEecCCccCCcch-------hhhcCCCCCceecccCCccccc
Q 043930          293 S----ADICKLPHLLNFTFSNNFFQGMAM-------ECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       293 ~----~~l~~l~~L~~L~L~~N~l~~~~~-------~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      .    ..+..+.+|++|+|++|.+.++..       +.+..+.+|++||+++|.|.+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            4    334667889999999998655433       3556778899999999998765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=6.3e-27  Score=240.34  Aligned_cols=205  Identities=18%  Similarity=0.167  Sum_probs=129.5

Q ss_pred             ccEEEEEcCCCCccccCchhh--hCCcCCCEEECCCCCCCccChhhhcCC-----CCCcEEEccCCcCCCCchhhhhCCC
Q 043930           84 RFVAMIDLNKAEIAAHLPPEM--GWLLDLIYFHANTNRLCGIIPETFANM-----HRLEEFDVSNNRLVGPFPTVALTWK  156 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~  156 (629)
                      .+|++|+|++|+|.+.++..+  +.+++|++|+|++|++.+. +..|.++     .+|++|+|++|+|.+..+..|..+.
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            445555555555555555443  5555555555555555544 4444444     5555555555555554445555555


Q ss_pred             CCcEEEccCCcCccCC--Cchh--cc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEE
Q 043930          157 RNLYLDLRFNNFEGEL--PPEL--FQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEI  231 (629)
Q Consensus       157 ~L~~L~Ls~n~l~~~i--p~~~--~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  231 (629)
                      +|++|+|++|++.+.+  ...+  .. .+|++|+|++|.|++. .                   +.....+.++++|++|
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-------------------~~~~~~~~~l~~L~~L  233 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-S-------------------GVCSALAAARVQLQGL  233 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-H-------------------HHHHHHHHTTCCCSEE
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-H-------------------HHHHHHHhcCCCCCEE
Confidence            5555555555544321  1111  11 4555555555554411 0                   1111234567899999


Q ss_pred             EccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCc
Q 043930          232 ILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF  311 (629)
Q Consensus       232 ~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~  311 (629)
                      +|++|+|++.++.... ..+.+|++|+|++|+|+ .++..+.  .+|++|||++|+|++. +. +..+.+|++|+|++|.
T Consensus       234 ~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          234 DLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             ECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred             ECCCCcCCcccchhhh-hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence            9999999976643322 15789999999999998 6666655  7899999999999986 44 8899999999999999


Q ss_pred             cCCc
Q 043930          312 FQGM  315 (629)
Q Consensus       312 l~~~  315 (629)
                      |++.
T Consensus       308 l~~~  311 (312)
T 1wwl_A          308 FLDS  311 (312)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            9864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.1e-26  Score=250.81  Aligned_cols=236  Identities=17%  Similarity=0.128  Sum_probs=197.0

Q ss_pred             EcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCc
Q 043930           90 DLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFE  169 (629)
Q Consensus        90 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  169 (629)
                      ++...++...+......+.+|++|+|++|.|.+..+..|.++.+|++|+|++|.|++..+  +..+.+|++|+|++|.|+
T Consensus        16 ~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~   93 (487)
T 3oja_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ   93 (487)
T ss_dssp             SCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE
T ss_pred             cCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC
Confidence            444444433222223334589999999999999888899999999999999999987554  889999999999999998


Q ss_pred             cCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccC
Q 043930          170 GELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSG  249 (629)
Q Consensus       170 ~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~  249 (629)
                       .++.   ..+|++|+|++|.|++.....+  .+|++|+|++|.+++..+..|+++.+|++|+|++|.|++.++..+.. 
T Consensus        94 -~l~~---~~~L~~L~L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-  166 (487)
T 3oja_A           94 -ELLV---GPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-  166 (487)
T ss_dssp             -EEEE---CTTCCEEECCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-
T ss_pred             -CCCC---CCCcCEEECcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-
Confidence             3332   2899999999999997655433  57999999999999988889999999999999999999877777652 


Q ss_pred             CCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCcee
Q 043930          250 EYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF  329 (629)
Q Consensus       250 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L  329 (629)
                      .+.+|++|+|++|.|++..  .+..+.+|++|+|++|.|+++.. .|..+.+|+.|+|++|.|+++ +..+..+.+|+.|
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L  242 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHF  242 (487)
T ss_dssp             GTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEE
T ss_pred             hCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEE
Confidence            6899999999999998652  34468999999999999998544 488999999999999999974 5568889999999


Q ss_pred             cccCCcccc
Q 043930          330 EEKGNCLAE  338 (629)
Q Consensus       330 ~l~~N~l~~  338 (629)
                      ++++|.+.+
T Consensus       243 ~l~~N~l~c  251 (487)
T 3oja_A          243 DLRGNGFHC  251 (487)
T ss_dssp             ECTTCCBCH
T ss_pred             EcCCCCCcC
Confidence            999999983

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.92  E-value=7.7e-27  Score=252.90  Aligned_cols=310  Identities=13%  Similarity=0.070  Sum_probs=217.4

Q ss_pred             hhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCcee----cCCCCCCCcccEEEEEcCCCCc
Q 043930           21 FEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVL----CDVFIDNQERFVAMIDLNKAEI   96 (629)
Q Consensus        21 l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~----~~~~~~~~~~~L~~L~L~~n~l   96 (629)
                      +..+.+|++|++++|++....  +..+...+...  ..+..++ ...+.+....    +... .....+|++|+|++|+|
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~--~~~l~~~l~~~--~~L~~L~-Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~L~~n~i   97 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEAR--CKDISSALRVN--PALAELN-LRSNELGDVGVHCVLQGL-QTPSCKIQKLSLQNCCL   97 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHH--HHHHHHHHHTC--TTCCEEE-CTTCCCHHHHHHHHHHTT-CSTTCCCCEEECTTSCC
T ss_pred             HhhcCCccEEEccCCCCCHHH--HHHHHHHHHhC--CCcCEEe-CCCCcCChHHHHHHHHHH-hhCCCceeEEEccCCCC
Confidence            677889999999999886542  22333333211  1111111 1112222111    1100 00112699999999999


Q ss_pred             cc----cCchhhhCCcCCCEEECCCCCCCccChhhhc-----CCCCCcEEEccCCcCCCCc----hhhhhCCCCCcEEEc
Q 043930           97 AA----HLPPEMGWLLDLIYFHANTNRLCGIIPETFA-----NMHRLEEFDVSNNRLVGPF----PTVALTWKRNLYLDL  163 (629)
Q Consensus        97 ~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L  163 (629)
                      .+    .+...+.++++|++|+|++|.+.+.....+.     .+.+|++|+|++|++++..    ...+..+.+|++|+|
T Consensus        98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  177 (461)
T 1z7x_W           98 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV  177 (461)
T ss_dssp             BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred             CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence            85    4577888999999999999998754333332     3568999999999998643    555677899999999


Q ss_pred             cCCcCccCCCchhcc------CCCCEEEecCccccccC----chhhhh-hhhHHHHhcCCcccccC-----CccccCCCC
Q 043930          164 RFNNFEGELPPELFQ------TGLDIIFLNHNWFRGSI----PETIGE-SLARYIVLSSNNFTGCL-----PRSIGYMKE  227 (629)
Q Consensus       164 s~n~l~~~ip~~~~~------~~L~~L~L~~n~l~~~~----~~~~~~-~~L~~L~l~~n~l~~~~-----~~~l~~l~~  227 (629)
                      ++|.+++.....+..      .+|++|+|++|.+++..    ...+.. .+|++|++++|.+++..     ...+..+.+
T Consensus       178 ~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~  257 (461)
T 1z7x_W          178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR  257 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             cCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence            999987543333322      48999999999998643    333333 57899999999887542     222345789


Q ss_pred             CcEEEccCCccccc----CCcccccCCCCCCcEEEecCCcccccchHHhhcc-----cCccceeccccccccc----ccc
Q 043930          228 LQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL-----NNIMRLDISDNMLTGF----VSA  294 (629)
Q Consensus       228 L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~----~~~  294 (629)
                      |++|+|++|+|++.    +...+.  .+.+|++|+|++|.|++.....+...     .+|++|+|++|.|++.    +..
T Consensus       258 L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  335 (461)
T 1z7x_W          258 LRTLWIWECGITAKGCGDLCRVLR--AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  335 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHH--HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceEEECcCCCCCHHHHHHHHHHHh--hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence            99999999999854    455555  58899999999999986555555543     6899999999999875    345


Q ss_pred             cccCCCCCcEEEecCCccCCcchhhhcC-----CCCCceecccCCcccc
Q 043930          295 DICKLPHLLNFTFSNNFFQGMAMECISG-----SRDDVYFEEKGNCLAE  338 (629)
Q Consensus       295 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~-----l~~L~~L~l~~N~l~~  338 (629)
                      .+..+.+|++|+|++|.+++.....+..     +.+|++|+|++|.|++
T Consensus       336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            5667899999999999998765544442     6799999999999985

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.9e-24  Score=217.75  Aligned_cols=205  Identities=16%  Similarity=0.098  Sum_probs=134.1

Q ss_pred             cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEe
Q 043930          108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFL  186 (629)
Q Consensus       108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L  186 (629)
                      .+|++|+|++|++.+.....|.++.+|++|+|++|+|++.....|.++.+|++|+|++|++++.....+.. .+|++|+|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35666777777666555556666667777777777666555555666667777777777666333333332 56666666


Q ss_pred             cCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc-CCcccccCCCCCCcEEEecCCccc
Q 043930          187 NHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC-LPSEIGSGEYKNLTVFDIRSNKFH  265 (629)
Q Consensus       187 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~l~~L~~L~Ls~n~l~  265 (629)
                      ++|.+.+.                       ....|+++.+|++|+|++|.|++. ++..+.  .+.+|++|+|++|+|+
T Consensus       108 ~~n~l~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~--~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          108 VETNLASL-----------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TTSCCCCS-----------------------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCSSCCC
T ss_pred             CCCCcccc-----------------------CchhcccCCCCCEEECcCCccceecCchhhc--cCCCCCEEECCCCCCC
Confidence            66555421                       122356677777777777777642 456665  6777778888777777


Q ss_pred             ccchHHhhcccCcc----ceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930          266 GSVPQSFANLNNIM----RLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       266 ~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      +.....|..+.+|+    +|+|++|.|.++....+ ...+|++|+|++|+|+++....|.++.+|++|+|++|.|.+
T Consensus       163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            66566666666666    67777887776544433 33478888888888877776677777888888888877764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=1.8e-24  Score=233.52  Aligned_cols=208  Identities=16%  Similarity=0.149  Sum_probs=133.0

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      +.+|+.|+|++|+|.+. + .|+++++|++|+|++|+|++.   .|+++.+|++|+|++|+|++.   .+.++.+|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCcCCEEE
Confidence            45577777777777654 3 567777777777777777653   266777777777777777663   266677777777


Q ss_pred             ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc
Q 043930          163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC  241 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  241 (629)
                      |++|++++ ++  +.. .+|++|+|++|.+++. . .-...+|++|++++|...+.+  .++.+.+|++|+|++|+|++ 
T Consensus       113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-  184 (457)
T 3bz5_A          113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-  184 (457)
T ss_dssp             CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred             CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence            77777763 43  222 6677777777777653 1 112245667777777544444  36666777777777777764 


Q ss_pred             CCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcc
Q 043930          242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA  316 (629)
Q Consensus       242 ~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  316 (629)
                      ++  +.  .+.+|++|+|++|+|++.   .|..+.+|++|+|++|+|+++ +  +..+.+|++|+|++|+|+++.
T Consensus       185 l~--l~--~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          185 LD--VS--QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CC--CT--TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC
T ss_pred             ec--cc--cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC
Confidence            32  33  566677777777776643   356666777777777777663 2  566667777777777766654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=2.4e-25  Score=240.17  Aligned_cols=231  Identities=17%  Similarity=0.162  Sum_probs=104.4

Q ss_pred             hhhcCCCCCCCCcchhhhcCCCcccccchhhhHHHH-------H--HHHHHHHhhc-----CC-CCCCCCC-------C-
Q 043930            7 QALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYV-------G--LQAFKKAIYS-----DP-YNHTENW-------V-   63 (629)
Q Consensus         7 ~~l~~~~~~~i~~~l~~l~~L~~L~ls~~~l~~~~~-------~--l~~~~~~~~~-----~~-~~~l~~~-------~-   63 (629)
                      ..++.+..++|++.|+++++|++|++++|++.+...       .  ...+......     +. ...+..+       . 
T Consensus        16 L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~   95 (454)
T 1jl5_A           16 PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLES   95 (454)
T ss_dssp             ------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSE
T ss_pred             hhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCE
Confidence            344556668999999999999999999998753211       1  1111111100     00 0000000       0 


Q ss_pred             -CCCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCC
Q 043930           64 -GTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN  142 (629)
Q Consensus        64 -~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  142 (629)
                       ....+.+.++.      ....+|+.|+|++|++.+. +.   ...+|++|+|++|++.+ ++ .|+++.+|++|+|++|
T Consensus        96 L~l~~n~l~~lp------~~~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           96 LVASCNSLTELP------ELPQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             EECCSSCCSSCC------CCCTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred             EEccCCcCCccc------cccCCCcEEECCCCccCcc-cC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence             00111111110      1123455555555555431 11   11466666666666664 33 4666666666666666


Q ss_pred             cCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccc
Q 043930          143 RLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSI  222 (629)
Q Consensus       143 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  222 (629)
                      ++++ ++..   ..+|++|+|++|+++ .++......+|++|++++|.+++ ++...  .+|++|++++|.+. .++ .|
T Consensus       164 ~l~~-lp~~---~~~L~~L~L~~n~l~-~l~~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~  233 (454)
T 1jl5_A          164 SLKK-LPDL---PPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-EL  233 (454)
T ss_dssp             CCSC-CCCC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CC
T ss_pred             cCcc-cCCC---cccccEEECcCCcCC-cCccccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-cc
Confidence            6664 3322   236666666666665 34421112666666666666654 22221  25666666666666 344 36


Q ss_pred             cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccc
Q 043930          223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH  265 (629)
Q Consensus       223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~  265 (629)
                      +++.+|++|+|++|++++ ++.     .+.+|++|+|++|+++
T Consensus       234 ~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          234 QNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLT  270 (454)
T ss_dssp             TTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCS
T ss_pred             CCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCccc
Confidence            666666666666666652 222     1234555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.4e-24  Score=218.67  Aligned_cols=208  Identities=13%  Similarity=0.087  Sum_probs=171.8

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      ...|+.|+|++|+|.+.....|.++.+|++|+|++|++.+.....|.++.+|++|+|++|.|++.....|.++.+|++|+
T Consensus        27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            35699999999999988878899999999999999999988778899999999999999999987778899999999999


Q ss_pred             ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc
Q 043930          163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC  241 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  241 (629)
                      |++|++++.....+.. .+|++|+|++|.+++.                      .++..|+++.+|++|+|++|+|++.
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCCCEEECCCCCCCcC
Confidence            9999998433333433 7899999988887632                      2345677889999999999999866


Q ss_pred             CCcccccCCCCCCc----EEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCc
Q 043930          242 LPSEIGSGEYKNLT----VFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM  315 (629)
Q Consensus       242 ~p~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  315 (629)
                      ....+.  .+.+|+    +|+|++|.|++.....+ ...+|++|+|++|+|+++....|.++.+|++|+|++|.+.+.
T Consensus       165 ~~~~~~--~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          165 YCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CGGGGH--HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             CHHHhh--hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            555554  455555    89999999986544444 445899999999999987767788899999999999998753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=2.6e-25  Score=235.39  Aligned_cols=232  Identities=18%  Similarity=0.209  Sum_probs=148.6

Q ss_pred             cccEEEEEcCCCCccccCc----hhhhCCcCCCEEECCCCC---CCccChhhh-------cCCCCCcEEEccCCcCCC--
Q 043930           83 ERFVAMIDLNKAEIAAHLP----PEMGWLLDLIYFHANTNR---LCGIIPETF-------ANMHRLEEFDVSNNRLVG--  146 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~--  146 (629)
                      ..+|+.|+|++|+|.+...    ..|.++++|++|+|++|.   +.+.++..+       ..+.+|++|+|++|.|.+  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4567888888888776533    335577888888888753   333444433       677888888888888876  


Q ss_pred             --CchhhhhCCCCCcEEEccCCcCccCCCchhcc--------------CCCCEEEecCcccccc-Cc---hhhhh-hhhH
Q 043930          147 --PFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--------------TGLDIIFLNHNWFRGS-IP---ETIGE-SLAR  205 (629)
Q Consensus       147 --~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--------------~~L~~L~L~~n~l~~~-~~---~~~~~-~~L~  205 (629)
                        .+...+..+.+|++|+|++|.|++.....+..              .+|++|+|++|.|+.. +.   ..+.. .+|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              35556777888888888888876332222222              4788888888887632 22   12222 3577


Q ss_pred             HHHhcCCcccc-----cCCccccCCCCCcEEEccCCccc----ccCCcccccCCCCCCcEEEecCCccccc----chHHh
Q 043930          206 YIVLSSNNFTG-----CLPRSIGYMKELQEIILMENQLS----GCLPSEIGSGEYKNLTVFDIRSNKFHGS----VPQSF  272 (629)
Q Consensus       206 ~L~l~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~  272 (629)
                      +|+|++|+++.     .+...|.++.+|++|+|++|.|+    +.++..+.  .+.+|++|+|++|.|++.    +...+
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l  268 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNLRELGLNDCLLSARGAAAVVDAF  268 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--GCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc--cCCCcCEEECCCCCCchhhHHHHHHHH
Confidence            77777777662     12235666777777777777774    34555554  567777777777777654    33444


Q ss_pred             hc--ccCccceecccccccc----cccccc-cCCCCCcEEEecCCccCCcc
Q 043930          273 AN--LNNIMRLDISDNMLTG----FVSADI-CKLPHLLNFTFSNNFFQGMA  316 (629)
Q Consensus       273 ~~--l~~L~~L~Ls~N~l~~----~~~~~l-~~l~~L~~L~L~~N~l~~~~  316 (629)
                      ..  +.+|++|+|++|.|++    .+...+ .++.+|++|+|++|.|++..
T Consensus       269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            32  6777777777777776    244444 44677777777777776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.6e-23  Score=212.42  Aligned_cols=200  Identities=20%  Similarity=0.189  Sum_probs=139.2

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      +.+++.|+++++++.. ++..+  ..+|++|+|++|+|.+.....|.++.+|++|+|++|.|++.. . ...+.+|++|+
T Consensus         9 l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~   83 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-V-DGTLPVLGTLD   83 (290)
T ss_dssp             STTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-C-CSCCTTCCEEE
T ss_pred             cCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-C-CCCCCcCCEEE
Confidence            4557777777777754 34333  257777788877777766677777777777777777776532 2 25677777777


Q ss_pred             ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc
Q 043930          163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC  241 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  241 (629)
                      |++|+|+ .++..+.. .+|++|+|++|+|+                       +.....|.++.+|++|+|++|+|++.
T Consensus        84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-----------------------~l~~~~~~~l~~L~~L~L~~N~l~~~  139 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-----------------------SLPLGALRGLGELQELYLKGNELKTL  139 (290)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-----------------------CCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             CCCCcCC-cCchhhccCCCCCEEECCCCcCc-----------------------ccCHHHHcCCCCCCEEECCCCCCCcc
Confidence            7777776 55554433 56666666666554                       23335677788888888888888844


Q ss_pred             CCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930          242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       242 ~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      ....+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+. ++..+..+.+|+.|+|++|.+..
T Consensus       140 ~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          140 PPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTTTT--TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             Chhhcc--cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence            444444  67888888888888886555667778888888888888874 56666677788888888887764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=2.6e-25  Score=230.57  Aligned_cols=248  Identities=15%  Similarity=0.163  Sum_probs=179.9

Q ss_pred             cEEEEEcCCCCccccCchhhhCC--cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCC-chhhhhCCCCCcEE
Q 043930           85 FVAMIDLNKAEIAAHLPPEMGWL--LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP-FPTVALTWKRNLYL  161 (629)
Q Consensus        85 ~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L  161 (629)
                      .++.||++++++.   ...+..+  .+|++|++++|.+.+.... +.++.+|++|+|++|.+.+. +...+..+.+|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3667888887775   3455666  7788888888888765544 45678888888888887754 66667788888888


Q ss_pred             EccCCcCccCCCchhcc-CCCCEEEecCc-ccccc-Cchhhhh-hhhHHHHhcCC-ccccc-CCccccCCC-CCcEEEcc
Q 043930          162 DLRFNNFEGELPPELFQ-TGLDIIFLNHN-WFRGS-IPETIGE-SLARYIVLSSN-NFTGC-LPRSIGYMK-ELQEIILM  234 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n-~l~~~-~~~~~~~-~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~Ls  234 (629)
                      +|++|++++.+...+.. .+|++|+|++| .+++. +...+.. .+|++|++++| .+++. +...+..+. +|++|+|+
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            88888877655555554 78888888888 56643 3333333 46888888888 77754 456677888 99999999


Q ss_pred             CC--ccc-ccCCcccccCCCCCCcEEEecCCc-ccccchHHhhcccCccceecccc-cccccccccccCCCCCcEEEecC
Q 043930          235 EN--QLS-GCLPSEIGSGEYKNLTVFDIRSNK-FHGSVPQSFANLNNIMRLDISDN-MLTGFVSADICKLPHLLNFTFSN  309 (629)
Q Consensus       235 ~n--~l~-~~~p~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~L~~  309 (629)
                      +|  .++ +.++..+.  .+.+|++|+|++|. +++.....|.++.+|++|+|++| .+.......+.++.+|++|+|++
T Consensus       204 ~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             SCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             CCcccCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            99  454 34455555  68899999999998 77677778889999999999999 45444444678899999999999


Q ss_pred             CccCCcchhhhcCCCCCceecccCCccccccc
Q 043930          310 NFFQGMAMECISGSRDDVYFEEKGNCLAEMEY  341 (629)
Q Consensus       310 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  341 (629)
                      | +.+.....+.  ..|+.|++++|.+++...
T Consensus       282 ~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          282 I-VPDGTLQLLK--EALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             S-SCTTCHHHHH--HHSTTSEESCCCSCCTTC
T ss_pred             c-cCHHHHHHHH--hhCcceEEecccCccccC
Confidence            9 5554333332  346677788898886554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.7e-24  Score=214.39  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=56.0

Q ss_pred             ccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCC
Q 043930          222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH  301 (629)
Q Consensus       222 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  301 (629)
                      |+++.+|++|+|++|+|++.....+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++|.|++.....|.++.+
T Consensus       129 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQLQSLPKGVFD--KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  206 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             hccCCCCCEEECCCCccCccCHHHhc--cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence            44455555555555555533333333  4555555555555555444444555555555555555555544444555555


Q ss_pred             CcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930          302 LLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       302 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      |++|+|++|.+.+.       +..|++|++.+|.+.+
T Consensus       207 L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          207 LQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG  236 (272)
T ss_dssp             CCEEECCSSCBCCC-------TTTTHHHHHHHHHTGG
T ss_pred             CCEEEccCCCcccc-------CcHHHHHHHHHHhCCC
Confidence            55555555555432       3445555555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=5e-25  Score=233.17  Aligned_cols=239  Identities=18%  Similarity=0.185  Sum_probs=188.3

Q ss_pred             CchhhhCCcCCCEEECCCCCCCccC----hhhhcCCCCCcEEEccCCcC---CCCchhhh-------hCCCCCcEEEccC
Q 043930          100 LPPEMGWLLDLIYFHANTNRLCGII----PETFANMHRLEEFDVSNNRL---VGPFPTVA-------LTWKRNLYLDLRF  165 (629)
Q Consensus       100 ~p~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l---~~~~~~~l-------~~l~~L~~L~Ls~  165 (629)
                      +...+..+++|++|+|++|+|.+..    ...|..+++|++|+|++|.+   .+.++..+       ..+.+|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            5567888999999999999998653    34477899999999999744   44444444       6889999999999


Q ss_pred             CcCccC----CCchhcc-CCCCEEEecCccccccCchhhhh--------------hhhHHHHhcCCcccc-cCC---ccc
Q 043930          166 NNFEGE----LPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--------------SLARYIVLSSNNFTG-CLP---RSI  222 (629)
Q Consensus       166 n~l~~~----ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~--------------~~L~~L~l~~n~l~~-~~~---~~l  222 (629)
                      |+|++.    ++..+.. .+|++|+|++|.|++.....+..              .+|++|+|++|++++ .+.   ..|
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            999853    3434443 89999999999997554444433              378999999999973 333   467


Q ss_pred             cCCCCCcEEEccCCccccc-----CCcccccCCCCCCcEEEecCCccc----ccchHHhhcccCccceeccccccccc--
Q 043930          223 GYMKELQEIILMENQLSGC-----LPSEIGSGEYKNLTVFDIRSNKFH----GSVPQSFANLNNIMRLDISDNMLTGF--  291 (629)
Q Consensus       223 ~~l~~L~~L~Ls~n~l~~~-----~p~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~--  291 (629)
                      ..+.+|++|+|++|+|+..     +...+.  .+.+|++|+|++|.|+    ..++..|..+.+|++|+|++|.|++.  
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~--~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhh--cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            7889999999999999732     232555  7899999999999996    46777888999999999999999875  


Q ss_pred             --ccccc--cCCCCCcEEEecCCccCC----cchhhh-cCCCCCceecccCCcccccc
Q 043930          292 --VSADI--CKLPHLLNFTFSNNFFQG----MAMECI-SGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       292 --~~~~l--~~l~~L~~L~L~~N~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~  340 (629)
                        +...+  .++.+|++|+|++|.|++    .+...+ .++.+|++|+|++|.|++..
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              34555  338999999999999998    355555 56899999999999998655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=2.3e-24  Score=232.56  Aligned_cols=227  Identities=17%  Similarity=0.176  Sum_probs=108.1

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCC-------------CcEEEccCCcCCCCchh
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHR-------------LEEFDVSNNRLVGPFPT  150 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------------L~~L~Ls~n~l~~~~~~  150 (629)
                      .+|+.|++++|++ +.++.+|+++++|++|++++|++.|.++..++++.+             |++|+|++|.+++ ++.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence            4566777777777 566767777777777777777766666666666554             3666666666665 222


Q ss_pred             hhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcE
Q 043930          151 VALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQE  230 (629)
Q Consensus       151 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  230 (629)
                         ...+|++|+|++|++++ ++..+  .+|++|+|++|.+++. +...  .+|++|++++|++.+ ++ .|+++++|++
T Consensus        89 ---~~~~L~~L~l~~n~l~~-lp~~~--~~L~~L~l~~n~l~~l-~~~~--~~L~~L~L~~n~l~~-lp-~~~~l~~L~~  157 (454)
T 1jl5_A           89 ---LPPHLESLVASCNSLTE-LPELP--QSLKSLLVDNNNLKAL-SDLP--PLLEYLGVSNNQLEK-LP-ELQNSSFLKI  157 (454)
T ss_dssp             ---CCTTCSEEECCSSCCSS-CCCCC--TTCCEEECCSSCCSCC-CSCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred             ---CcCCCCEEEccCCcCCc-ccccc--CCCcEEECCCCccCcc-cCCC--CCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence               13566666666666663 44322  5566666666666531 1111  355666666666654 44 3666666666


Q ss_pred             EEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCC
Q 043930          231 IILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN  310 (629)
Q Consensus       231 L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  310 (629)
                      |++++|++++ ++..     ..+|++|+|++|++++ ++ .|.++.+|++|+|++|.++++ +..   ..+|++|+|++|
T Consensus       158 L~l~~N~l~~-lp~~-----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n  225 (454)
T 1jl5_A          158 IDVDNNSLKK-LPDL-----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNN  225 (454)
T ss_dssp             EECCSSCCSC-CCCC-----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSS
T ss_pred             EECCCCcCcc-cCCC-----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCC
Confidence            6666666652 3322     2355566666655553 33 355555555555555555541 111   124455555555


Q ss_pred             ccCCcchhhhcCCCCCceecccCCccc
Q 043930          311 FFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       311 ~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      .+..+.  .+.++.+|++|++++|.+.
T Consensus       226 ~l~~lp--~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          226 ILEELP--ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CCSSCC--CCTTCTTCCEEECCSSCCS
T ss_pred             cCCccc--ccCCCCCCCEEECCCCcCC
Confidence            444322  2444444445554444444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6.3e-24  Score=213.46  Aligned_cols=226  Identities=16%  Similarity=0.169  Sum_probs=184.9

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      +..+..+++.++.+.+.+  .+..+.+|++|++++|.+...  ..+..+++|++|+|++|.+++.  ..+..+.+|++|+
T Consensus        18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~   91 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred             HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence            344556677777776543  466789999999999998853  4588899999999999999873  4688999999999


Q ss_pred             ccCCcCccCCCchhc-c-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccc
Q 043930          163 LRFNNFEGELPPELF-Q-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS  239 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  239 (629)
                      |++|+|+ .+....+ . .+|++|+|++|.+++.....++. .+|++|++++|++++.....|+++.+|++|+|++|+|+
T Consensus        92 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A           92 LTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence            9999998 4544443 3 89999999999999766665654 58999999999999777777889999999999999998


Q ss_pred             ccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhh
Q 043930          240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMEC  319 (629)
Q Consensus       240 ~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  319 (629)
                      +.....+.  .+.+|++|+|++|+|++.....|..+.+|++|+|++|.+.+       .+.+|+.|++.+|.+.|.++..
T Consensus       171 ~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          171 SLPEGVFD--KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             ccCHHHhc--CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence            65555555  78999999999999998777778899999999999998764       4668899999999999888877


Q ss_pred             hcCCC
Q 043930          320 ISGSR  324 (629)
Q Consensus       320 l~~l~  324 (629)
                      +..+.
T Consensus       242 ~~~~~  246 (272)
T 3rfs_A          242 AGSVA  246 (272)
T ss_dssp             TSCBC
T ss_pred             ccccC
Confidence            66543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=7.3e-24  Score=217.24  Aligned_cols=227  Identities=13%  Similarity=0.036  Sum_probs=142.9

Q ss_pred             cEEEEEcCCCCccccCch---hhhCCcCCCEEECCCCCCCccChhhh--cCCCCCcEEEccCCcCCCCch----hhhhCC
Q 043930           85 FVAMIDLNKAEIAAHLPP---EMGWLLDLIYFHANTNRLCGIIPETF--ANMHRLEEFDVSNNRLVGPFP----TVALTW  155 (629)
Q Consensus        85 ~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~l  155 (629)
                      .++.|++.++.+......   .+..+.+|++|+|++|++.+..+..+  .++.+|++|+|++|.|.+...    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            355666666655432111   11223557777777777766666655  667777777777777765332    233456


Q ss_pred             CCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEcc
Q 043930          156 KRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILM  234 (629)
Q Consensus       156 ~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  234 (629)
                      .+|++|+|++|+|++.....+.. .+|++|+|++|.+.+...          +         .....++.+.+|++|+|+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~---------~~~~~~~~l~~L~~L~Ls  205 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG----------L---------MAALCPHKFPAIQNLALR  205 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH----------H---------HTTSCTTSSCCCCSCBCC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh----------h---------hHHHhhhcCCCCCEEECC
Confidence            67777777777776433333333 667777777766542100          0         011234567788888888


Q ss_pred             CCcccccCCc---c-cccCCCCCCcEEEecCCcccccchHHhhcc---cCccceecccccccccccccccCCCCCcEEEe
Q 043930          235 ENQLSGCLPS---E-IGSGEYKNLTVFDIRSNKFHGSVPQSFANL---NNIMRLDISDNMLTGFVSADICKLPHLLNFTF  307 (629)
Q Consensus       235 ~n~l~~~~p~---~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  307 (629)
                      +|+|+ .+..   . +.  .+.+|++|+|++|+|++.++..+..+   .+|++|+|++|+|+. ++..+.  .+|++|+|
T Consensus       206 ~N~l~-~l~~~~~~l~~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~L  279 (310)
T 4glp_A          206 NTGME-TPTGVCAALAA--AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDL  279 (310)
T ss_dssp             SSCCC-CHHHHHHHHHH--HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEEC
T ss_pred             CCCCC-chHHHHHHHHh--cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEEC
Confidence            88886 2222   1 22  56788888888888887666556655   588888888888884 455443  68888888


Q ss_pred             cCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930          308 SNNFFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       308 ~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      ++|+|+++.  .+..+.+|++|+|++|.|++
T Consensus       280 s~N~l~~~~--~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          280 SSNRLNRAP--QPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCCCCSCC--CTTSCCCCSCEECSSTTTSC
T ss_pred             CCCcCCCCc--hhhhCCCccEEECcCCCCCC
Confidence            888888752  25677888888888888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.1e-22  Score=204.16  Aligned_cols=204  Identities=16%  Similarity=0.142  Sum_probs=171.6

Q ss_pred             hhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCE
Q 043930          104 MGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDI  183 (629)
Q Consensus       104 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~  183 (629)
                      ++++.+|++|++++|+++. ++..+  ..+|++|+|++|.|++.....|..+.+|++|+|++|+|+ .+.......+|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCcCCE
Confidence            5678899999999999985 44433  368999999999999877888999999999999999998 4444333378888


Q ss_pred             EEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc
Q 043930          184 IFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK  263 (629)
Q Consensus       184 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~  263 (629)
                      |+|++|.|+                        .++..+.++.+|++|+|++|+|++..+..|.  .+.+|++|+|++|+
T Consensus        82 L~Ls~N~l~------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~--~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           82 LDLSHNQLQ------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALR--GLGELQELYLKGNE  135 (290)
T ss_dssp             EECCSSCCS------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTT--TCTTCCEEECTTSC
T ss_pred             EECCCCcCC------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHc--CCCCCCEEECCCCC
Confidence            888888776                        3345577889999999999999965556666  79999999999999


Q ss_pred             ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930          264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      |++.....|..+.+|++|+|++|+|+++....|.++.+|++|+|++|+|+.+ +..+..+..|++|+|.+|.+.+
T Consensus       136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence            9977777788999999999999999987767788899999999999999965 4456667899999999998875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=4.9e-24  Score=223.46  Aligned_cols=233  Identities=13%  Similarity=0.107  Sum_probs=183.1

Q ss_pred             cccEEEEEcCCCCccccCc----hhhhCCc-CCCEEECCCCCCCccChhhhcCC-----CCCcEEEccCCcCCCCchhhh
Q 043930           83 ERFVAMIDLNKAEIAAHLP----PEMGWLL-DLIYFHANTNRLCGIIPETFANM-----HRLEEFDVSNNRLVGPFPTVA  152 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l  152 (629)
                      ..+|+.|||++|+|.+...    ..|.++. +|++|+|++|+|.+.....|..+     .+|++|+|++|.|++.....+
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            3459999999999988776    7788888 89999999999998777777665     999999999999987666644


Q ss_pred             h----CC-CCCcEEEccCCcCccCCCchhcc------CCCCEEEecCccccccCchhhhh------hhhHHHHhcCCccc
Q 043930          153 L----TW-KRNLYLDLRFNNFEGELPPELFQ------TGLDIIFLNHNWFRGSIPETIGE------SLARYIVLSSNNFT  215 (629)
Q Consensus       153 ~----~l-~~L~~L~Ls~n~l~~~ip~~~~~------~~L~~L~L~~n~l~~~~~~~~~~------~~L~~L~l~~n~l~  215 (629)
                      .    .+ .+|++|+|++|+|++.....+..      .+|++|+|++|.|++.....+..      .+|++|+|++|+++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence            4    44 89999999999998555444322      58999999999999765554432      37999999999998


Q ss_pred             ccCCcc----ccCC-CCCcEEEccCCccccc----CCcccccCCCCCCcEEEecCCcccccchH----HhhcccCcccee
Q 043930          216 GCLPRS----IGYM-KELQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQ----SFANLNNIMRLD  282 (629)
Q Consensus       216 ~~~~~~----l~~l-~~L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~  282 (629)
                      +.....    +..+ .+|++|+|++|.|++.    +...+.. ...+|++|+|++|.|++....    .+..+.+|++|+
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~  259 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS-IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY  259 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence            765543    4445 6999999999999853    3334431 246999999999999876543    345678999999


Q ss_pred             cccccccccc-------cccccCCCCCcEEEecCCccCCcc
Q 043930          283 ISDNMLTGFV-------SADICKLPHLLNFTFSNNFFQGMA  316 (629)
Q Consensus       283 Ls~N~l~~~~-------~~~l~~l~~L~~L~L~~N~l~~~~  316 (629)
                      |++|.+.++.       ...+.++.+|++|||++|.|.+..
T Consensus       260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred             eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence            9999955432       335667889999999999998763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.1e-22  Score=201.90  Aligned_cols=192  Identities=19%  Similarity=0.241  Sum_probs=126.7

Q ss_pred             CCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCC
Q 043930           66 DVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLV  145 (629)
Q Consensus        66 ~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  145 (629)
                      .|+.|.|..|.       ...+.++++++++.. ++..+.  .+|++|+|++|+|.+.....|.++.+|++|+|++|.|+
T Consensus         3 ~Cp~~~gC~C~-------~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   72 (251)
T 3m19_A            3 TCETVTGCTCN-------EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ   72 (251)
T ss_dssp             -CHHHHSSEEE-------GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             cCCCCCceEcC-------CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC
Confidence            35567777774       235678899888865 444443  58889999999998887778888999999999999988


Q ss_pred             CCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCC
Q 043930          146 GPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYM  225 (629)
Q Consensus       146 ~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  225 (629)
                      +.....|..+.+|++|+|++|+|+ .++..                                             .|.++
T Consensus        73 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~---------------------------------------------~~~~l  106 (251)
T 3m19_A           73 TLSAGVFDDLTELGTLGLANNQLA-SLPLG---------------------------------------------VFDHL  106 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCC-CCCTT---------------------------------------------TTTTC
T ss_pred             ccCHhHhccCCcCCEEECCCCccc-ccChh---------------------------------------------Hhccc
Confidence            877777888888888888888876 33222                                             23444


Q ss_pred             CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEE
Q 043930          226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF  305 (629)
Q Consensus       226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  305 (629)
                      .+|++|+|++|+|++.....+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+++....|.++.+|++|
T Consensus       107 ~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          107 TQLDKLYLGGNQLKSLPSGVFD--RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCcCCCcChhHhc--cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            5555556655555533222233  45566666666666654444455566666666666666665555556666666666


Q ss_pred             EecCCccCCc
Q 043930          306 TFSNNFFQGM  315 (629)
Q Consensus       306 ~L~~N~l~~~  315 (629)
                      +|++|.|.+.
T Consensus       185 ~l~~N~~~c~  194 (251)
T 3m19_A          185 TLFGNQFDCS  194 (251)
T ss_dssp             ECCSCCBCTT
T ss_pred             EeeCCceeCC
Confidence            6666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=1.6e-23  Score=214.65  Aligned_cols=204  Identities=16%  Similarity=0.116  Sum_probs=158.3

Q ss_pred             ccEEEEEcCCCCccccCchhh--hCCcCCCEEECCCCCCCccCh----hhhcCCCCCcEEEccCCcCCCCchhhhhCCCC
Q 043930           84 RFVAMIDLNKAEIAAHLPPEM--GWLLDLIYFHANTNRLCGIIP----ETFANMHRLEEFDVSNNRLVGPFPTVALTWKR  157 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  157 (629)
                      .+|++|+|++|++.+.++..+  +.+.+|++|+|++|++.+...    ..+..+.+|++|+|++|+|.+.....+..+.+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            449999999999999988888  899999999999999987433    44568999999999999999888888999999


Q ss_pred             CcEEEccCCcCccC--CCchh--cc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEE
Q 043930          158 NLYLDLRFNNFEGE--LPPEL--FQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEII  232 (629)
Q Consensus       158 L~~L~Ls~n~l~~~--ip~~~--~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  232 (629)
                      |++|||++|++.+.  +....  .. .+|++|+|++|.++.. ...                   ....++++.+|++|+
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~-------------------~~~l~~~l~~L~~L~  230 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGV-------------------CAALAAAGVQPHSLD  230 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHH-------------------HHHHHHHTCCCSSEE
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHH-------------------HHHHHhcCCCCCEEE
Confidence            99999999998642  21112  12 6788888888887621 110                   001145667888889


Q ss_pred             ccCCcccccCCcccccCCC---CCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecC
Q 043930          233 LMENQLSGCLPSEIGSGEY---KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSN  309 (629)
Q Consensus       233 Ls~n~l~~~~p~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  309 (629)
                      |++|+|++.++..++  .+   .+|++|+|++|+|+ .++..+.  .+|++|+|++|+|+++ + .+..+.+|++|+|++
T Consensus       231 Ls~N~l~~~~p~~~~--~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~  303 (310)
T 4glp_A          231 LSHNSLRATVNPSAP--RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDG  303 (310)
T ss_dssp             CTTSCCCCCCCSCCS--SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSS
T ss_pred             CCCCCCCccchhhHH--hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCccEEECcC
Confidence            988888876666665  34   68999999999888 5555553  6899999999998874 2 267788999999999


Q ss_pred             CccCC
Q 043930          310 NFFQG  314 (629)
Q Consensus       310 N~l~~  314 (629)
                      |.|++
T Consensus       304 N~l~~  308 (310)
T 4glp_A          304 NPFLV  308 (310)
T ss_dssp             TTTSC
T ss_pred             CCCCC
Confidence            98875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=1.7e-22  Score=206.85  Aligned_cols=195  Identities=17%  Similarity=0.304  Sum_probs=148.8

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      .+.+|+.|++++|++... . .+..+.+|++|+|++|++.+...  |.++.+|++|+|++|+|++.  ..+..+.+|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            356688888888887653 2 57788888888888888876433  78888888888888888763  357788888888


Q ss_pred             EccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc
Q 043930          162 DLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC  241 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  241 (629)
                      +|++|+++ .+.......+|++|+|++|.+++.                        . .|+++.+|++|+|++|++++ 
T Consensus       113 ~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~------------------------~-~l~~l~~L~~L~l~~n~l~~-  165 (308)
T 1h6u_A          113 DLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNI------------------------S-PLAGLTNLQYLSIGNAQVSD-  165 (308)
T ss_dssp             ECTTSCCC-CCGGGTTCTTCCEEECCSSCCCCC------------------------G-GGGGCTTCCEEECCSSCCCC-
T ss_pred             ECCCCCCC-CchhhcCCCCCCEEECCCCccCcC------------------------c-cccCCCCccEEEccCCcCCC-
Confidence            88888887 444322227777777777766522                        1 16678899999999999984 


Q ss_pred             CCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcc
Q 043930          242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA  316 (629)
Q Consensus       242 ~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  316 (629)
                      +.. +.  .+.+|++|+|++|+|++...  +..+.+|++|+|++|.|.+..  .+.++.+|++|+|++|.|++..
T Consensus       166 ~~~-l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          166 LTP-LA--NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CGG-GT--TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred             Chh-hc--CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence            333 44  78999999999999985443  788999999999999998764  3888999999999999987743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=3.5e-23  Score=230.36  Aligned_cols=226  Identities=21%  Similarity=0.239  Sum_probs=158.5

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL  163 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  163 (629)
                      .+|+.|+|++|+|.. ++.   .+.+|++|+|++|+|++ ++.   .+.+|++|+|++|.|++. +.   .+.+|++|+|
T Consensus        61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence            578889999988875 443   57889999999998875 333   678899999999988873 33   5678888888


Q ss_pred             cCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      ++|+|+ .++..+  .+|++|+|++|.|++ ++..+  .+|+.|++++|.|++ ++   ..+.+|++|+|++|.|++ ++
T Consensus       129 ~~N~l~-~lp~~l--~~L~~L~Ls~N~l~~-l~~~~--~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~  197 (622)
T 3g06_A          129 FGNQLT-SLPVLP--PGLQELSVSDNQLAS-LPALP--SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LP  197 (622)
T ss_dssp             CSSCCS-CCCCCC--TTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC
T ss_pred             CCCCCC-cCCCCC--CCCCEEECcCCcCCC-cCCcc--CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CC
Confidence            888887 565533  788888888888874 22221  345555566665553 22   233555555555555552 22


Q ss_pred             ccccc---------------CCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEec
Q 043930          244 SEIGS---------------GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFS  308 (629)
Q Consensus       244 ~~~~~---------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  308 (629)
                      ..+..               ..+.+|++|+|++|+|++ ++   ..+.+|++|+|++|.|+++ +.   .+.+|++|+|+
T Consensus       198 ~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls  269 (622)
T 3g06_A          198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVY  269 (622)
T ss_dssp             CCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECC
T ss_pred             CccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCC
Confidence            11100               023678888888888875 33   4567889999999988853 33   56789999999


Q ss_pred             CCccCCcchhhhcCCCCCceecccCCccccccc
Q 043930          309 NNFFQGMAMECISGSRDDVYFEEKGNCLAEMEY  341 (629)
Q Consensus       309 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  341 (629)
                      +|+|+.+ +..|.++.+|++|+|++|.|.+...
T Consensus       270 ~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          270 RNQLTRL-PESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             SSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCCCCcC-CHHHhhccccCEEEecCCCCCCcCH
Confidence            9999955 5678899999999999999986543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=7.9e-22  Score=197.89  Aligned_cols=182  Identities=20%  Similarity=0.250  Sum_probs=155.8

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      ...|+.|+|++|+|.+.....|.++.+|++|+|++|+|.+.....|.++.+|++|+|++|+|++.....+..+.+|++|+
T Consensus        36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            45699999999999987777899999999999999999977777789999999999999999987777789999999999


Q ss_pred             ccCCcCccCCCchhc-c-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930          163 LRFNNFEGELPPELF-Q-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG  240 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  240 (629)
                      |++|+|+ .+....+ . .+|++|+|++|.|++.                       ....|.++.+|++|+|++|+|++
T Consensus       116 l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------------~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A          116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL-----------------------PKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCccC-eeCHHHhCcCcCCCEEECCCCcCCcc-----------------------CHhHccCCcccceeEecCCcCcE
Confidence            9999998 4544443 3 8899999988877622                       22347788999999999999996


Q ss_pred             cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccc
Q 043930          241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG  290 (629)
Q Consensus       241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  290 (629)
                      .....+.  .+.+|++|+|++|+|++.....|..+.+|++|+|++|.+..
T Consensus       172 ~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          172 VPEGAFD--KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             eChhHhc--cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            5555565  78999999999999997777778899999999999999864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=4.8e-22  Score=203.39  Aligned_cols=198  Identities=15%  Similarity=0.214  Sum_probs=157.6

Q ss_pred             hhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCE
Q 043930          104 MGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDI  183 (629)
Q Consensus       104 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~  183 (629)
                      +..+.+|++|++++|++... . .|..+.+|++|+|++|.|.+...  +..+.+|++|+|++|+++ .+.......+|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~  111 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKT  111 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCE
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-CchhhcCCCCCCE
Confidence            45678899999999988853 3 68889999999999999987443  888999999999999987 4543222278888


Q ss_pred             EEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc
Q 043930          184 IFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK  263 (629)
Q Consensus       184 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~  263 (629)
                      |+|++|.+++.                         ..|.++.+|++|+|++|++++.. . +.  .+.+|++|+|++|+
T Consensus       112 L~l~~n~l~~~-------------------------~~l~~l~~L~~L~l~~n~l~~~~-~-l~--~l~~L~~L~l~~n~  162 (308)
T 1h6u_A          112 LDLTSTQITDV-------------------------TPLAGLSNLQVLYLDLNQITNIS-P-LA--GLTNLQYLSIGNAQ  162 (308)
T ss_dssp             EECTTSCCCCC-------------------------GGGTTCTTCCEEECCSSCCCCCG-G-GG--GCTTCCEEECCSSC
T ss_pred             EECCCCCCCCc-------------------------hhhcCCCCCCEEECCCCccCcCc-c-cc--CCCCccEEEccCCc
Confidence            88888877621                         12677889999999999988443 2 44  78899999999999


Q ss_pred             ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccccc
Q 043930          264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEY  341 (629)
Q Consensus       264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  341 (629)
                      |++...  +..+.+|++|+|++|.|++...  +.++.+|++|+|++|.|.++.  .+..+.+|++|+|++|.|++...
T Consensus       163 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          163 VSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence            985433  8889999999999999987543  788899999999999998876  37888999999999999886543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=6e-22  Score=194.95  Aligned_cols=194  Identities=12%  Similarity=0.112  Sum_probs=118.8

Q ss_pred             CCCEEECCCCCCCccChhhhcCCCCCcEEEccCCc-CCCCchhhhhCCCCCcEEEccC-CcCccCCCchhcc--CCCCEE
Q 043930          109 DLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNR-LVGPFPTVALTWKRNLYLDLRF-NNFEGELPPELFQ--TGLDII  184 (629)
Q Consensus       109 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~ip~~~~~--~~L~~L  184 (629)
                      +|++|+|++|+|++.....|.++.+|++|+|++|+ +++.....|.++.+|++|+|++ |+|+ .++...|.  .+|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            67777777777776665667777777777777775 6654445667777777777776 7776 44433332  567777


Q ss_pred             EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCc---EEEccCC-cccccCCcccccCCCCCCc-EEEe
Q 043930          185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQ---EIILMEN-QLSGCLPSEIGSGEYKNLT-VFDI  259 (629)
Q Consensus       185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~p~~~~~~~l~~L~-~L~L  259 (629)
                      +|++|.+++ ++                       . |.++.+|+   +|+|++| ++++.....+.  .+.+|+ +|+|
T Consensus       111 ~l~~n~l~~-lp-----------------------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--~l~~L~~~L~l  163 (239)
T 2xwt_C          111 GIFNTGLKM-FP-----------------------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ--GLCNETLTLKL  163 (239)
T ss_dssp             EEEEECCCS-CC-----------------------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTT--TTBSSEEEEEC
T ss_pred             eCCCCCCcc-cc-----------------------c-cccccccccccEEECCCCcchhhcCccccc--chhcceeEEEc
Confidence            777766652 21                       1 33344444   6677666 66643333344  566666 7777


Q ss_pred             cCCcccccchHHhhcccCccceeccccc-ccccccccccCC-CCCcEEEecCCccCCcchhhhcCCCCCceecccCC
Q 043930          260 RSNKFHGSVPQSFANLNNIMRLDISDNM-LTGFVSADICKL-PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGN  334 (629)
Q Consensus       260 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N  334 (629)
                      ++|+|+..-...|.. .+|++|+|++|+ |+++....|.++ .+|++|+|++|.|+++...   .+.+|++|++.++
T Consensus       164 ~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          164 YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            777666322222333 567777777773 665555556666 6777777777777655433   4556666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=3.8e-23  Score=214.22  Aligned_cols=233  Identities=13%  Similarity=0.084  Sum_probs=184.7

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCcc-ChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGI-IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      .+++.|++++|.+.+.... +.++.+|++|+|++|.+.+. +...+.++.+|++|+|++|.+++.+...+..+.+|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            6789999999999887654 56789999999999998865 777889999999999999999887888899999999999


Q ss_pred             ccCC-cCccC-CCchhcc-CCCCEEEecCc-ccccc-Cchhhhh-h-hhHHHHhcCC--ccc-ccCCccccCCCCCcEEE
Q 043930          163 LRFN-NFEGE-LPPELFQ-TGLDIIFLNHN-WFRGS-IPETIGE-S-LARYIVLSSN--NFT-GCLPRSIGYMKELQEII  232 (629)
Q Consensus       163 Ls~n-~l~~~-ip~~~~~-~~L~~L~L~~n-~l~~~-~~~~~~~-~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~  232 (629)
                      |++| .+++. +...+.. .+|++|+|++| .+++. +...+.. . +|++|+|++|  .++ +.+...+.++++|++|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            9999 67642 3333333 89999999999 88864 3444444 4 7999999999  455 44566778899999999


Q ss_pred             ccCCc-ccccCCcccccCCCCCCcEEEecCC-cccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCC
Q 043930          233 LMENQ-LSGCLPSEIGSGEYKNLTVFDIRSN-KFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN  310 (629)
Q Consensus       233 Ls~n~-l~~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  310 (629)
                      |++|. +++.....+.  .+.+|++|+|++| .+.......|.++++|++|+|++| +.......+.  .+|+.|+|++|
T Consensus       229 l~~~~~l~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n  303 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFF--QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCS  303 (336)
T ss_dssp             CTTCTTCCGGGGGGGG--GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCC
T ss_pred             CCCCCcCCHHHHHHHh--CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecc
Confidence            99999 7766677776  7899999999999 455444456888999999999999 6543333332  34677779999


Q ss_pred             ccCCcchhhhcC
Q 043930          311 FFQGMAMECISG  322 (629)
Q Consensus       311 ~l~~~~~~~l~~  322 (629)
                      ++++.....+..
T Consensus       304 ~l~~~~~~~~~~  315 (336)
T 2ast_B          304 HFTTIARPTIGN  315 (336)
T ss_dssp             CSCCTTCSSCSS
T ss_pred             cCccccCCcccc
Confidence            999987765553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=7.8e-22  Score=194.13  Aligned_cols=198  Identities=15%  Similarity=0.171  Sum_probs=164.2

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCC-CCccChhhhcCCCCCcEEEccC-CcCCCCchhhhhCCCCCcE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR-LCGIIPETFANMHRLEEFDVSN-NRLVGPFPTVALTWKRNLY  160 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~  160 (629)
                      ...|+.|+|++|+|.++....|+++.+|++|+|++|+ ++++....|.++.+|++|+|++ |+|++.....|.++.+|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3479999999999998887889999999999999997 8877777899999999999998 9999866678899999999


Q ss_pred             EEccCCcCccCCCchhcc-CCCC---EEEecCc-cccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCc-EEEcc
Q 043930          161 LDLRFNNFEGELPPELFQ-TGLD---IIFLNHN-WFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQ-EIILM  234 (629)
Q Consensus       161 L~Ls~n~l~~~ip~~~~~-~~L~---~L~L~~n-~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~Ls  234 (629)
                      |+|++|+++ .++. +.. .+|+   +|+|++| .++                       +.....|.++.+|+ +|+|+
T Consensus       110 L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~-----------------------~i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          110 LGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMT-----------------------SIPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCC-----------------------EECTTTTTTTBSSEEEEECC
T ss_pred             EeCCCCCCc-cccc-cccccccccccEEECCCCcchh-----------------------hcCcccccchhcceeEEEcC
Confidence            999999998 5776 322 6666   7777777 655                       23334577889999 99999


Q ss_pred             CCcccccCCcccccCCCCCCcEEEecCCc-ccccchHHhhcc-cCccceecccccccccccccccCCCCCcEEEecCCc
Q 043930          235 ENQLSGCLPSEIGSGEYKNLTVFDIRSNK-FHGSVPQSFANL-NNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF  311 (629)
Q Consensus       235 ~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~  311 (629)
                      +|+|+ .++...+  ...+|++|+|++|+ |++.....|.++ .+|++|+|++|.|+++...   .+.+|+.|+++++.
T Consensus       165 ~n~l~-~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          165 NNGFT-SVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             SCCCC-EECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCc-ccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            99998 6666555  34789999999995 986667788899 9999999999999864333   67899999998764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=2.2e-21  Score=215.93  Aligned_cols=257  Identities=17%  Similarity=0.202  Sum_probs=181.9

Q ss_pred             CCCCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcC
Q 043930           13 KDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLN   92 (629)
Q Consensus        13 ~~~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~   92 (629)
                      ....|+..+.  .+|++|++++|++.....            ....+... ....|.+.++..      .+.+|+.|+|+
T Consensus        51 ~L~~lp~~l~--~~L~~L~L~~N~l~~lp~------------~l~~L~~L-~Ls~N~l~~lp~------~l~~L~~L~Ls  109 (622)
T 3g06_A           51 GLTTLPDCLP--AHITTLVIPDNNLTSLPA------------LPPELRTL-EVSGNQLTSLPV------LPPGLLELSIF  109 (622)
T ss_dssp             CCSCCCSCCC--TTCSEEEECSCCCSCCCC------------CCTTCCEE-EECSCCCSCCCC------CCTTCCEEEEC
T ss_pred             CcCccChhhC--CCCcEEEecCCCCCCCCC------------cCCCCCEE-EcCCCcCCcCCC------CCCCCCEEECc
Confidence            3456666654  678888888887653211            00011110 111222222111      45678888888


Q ss_pred             CCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCC
Q 043930           93 KAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGEL  172 (629)
Q Consensus        93 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~i  172 (629)
                      +|+|.+. +.   .+.+|++|+|++|+|++ ++.   .+.+|++|+|++|.|++ ++.   .+.+|+.|+|++|+|+ .+
T Consensus       110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l  176 (622)
T 3g06_A          110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SL  176 (622)
T ss_dssp             SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CC
T ss_pred             CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CC
Confidence            8888663 22   56778888888888875 332   35788888888888876 222   3567888888888887 56


Q ss_pred             CchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCC
Q 043930          173 PPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYK  252 (629)
Q Consensus       173 p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~  252 (629)
                      +  ....+|++|+|++|.|++ ++..+  .+|+.|++++|.++. ++.   .+.+|++|+|++|+|++ ++   .  .+.
T Consensus       177 ~--~~~~~L~~L~Ls~N~l~~-l~~~~--~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~--~l~  241 (622)
T 3g06_A          177 P--MLPSGLQELSVSDNQLAS-LPTLP--SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---V--LPS  241 (622)
T ss_dssp             C--CCCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---C--CCT
T ss_pred             c--ccCCCCcEEECCCCCCCC-CCCcc--chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---C--CCC
Confidence            5  223789999999999885 33322  578888999998884 333   34789999999999984 44   2  578


Q ss_pred             CCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930          253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS  323 (629)
Q Consensus       253 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  323 (629)
                      +|++|+|++|+|++ ++.   .+.+|++|+|++|.|+. ++..|.++.+|+.|+|++|.|.+.....+..+
T Consensus       242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            99999999999994 544   67899999999999994 67889999999999999999998877766644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.4e-21  Score=193.80  Aligned_cols=178  Identities=18%  Similarity=0.167  Sum_probs=135.5

Q ss_pred             CcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCC
Q 043930          134 LEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSN  212 (629)
Q Consensus       134 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n  212 (629)
                      +++++++++.++. ++..+.  .+|++|+|++|+|++.....+.. .+|++|+|++                       |
T Consensus        16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-----------------------n   69 (251)
T 3m19_A           16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-----------------------N   69 (251)
T ss_dssp             GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-----------------------S
T ss_pred             CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-----------------------C
Confidence            4555666555553 332222  35555555555555322222222 4455555554                       4


Q ss_pred             cccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc
Q 043930          213 NFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV  292 (629)
Q Consensus       213 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  292 (629)
                      .|.+.....|.++.+|++|+|++|+|++.....+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+++.
T Consensus        70 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A           70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD--HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cCCccCHhHhccCCcCCEEECCCCcccccChhHhc--ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence            45445556788899999999999999965555665  7999999999999999777777899999999999999999877


Q ss_pred             cccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          293 SADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       293 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      ...|.++.+|++|+|++|+|.++....|..+.+|++|+|++|.|.+.
T Consensus       148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            77899999999999999999999888999999999999999999764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=1.5e-22  Score=226.24  Aligned_cols=258  Identities=14%  Similarity=0.060  Sum_probs=168.2

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCC--------------------------CccChhhhcCCCCCcE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRL--------------------------CGIIPETFANMHRLEE  136 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l--------------------------~~~~~~~~~~l~~L~~  136 (629)
                      +.+|+.|+|++|.+.+ ++..+.++.+|++|+++++..                          .+.++..+..+.+|++
T Consensus       219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK  297 (592)
T ss_dssp             CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred             CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence            4567888888877765 445666666666666653211                          1234445566677777


Q ss_pred             EEccCCcCCCCch-hhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecC-----------ccccccCchhhh--
Q 043930          137 FDVSNNRLVGPFP-TVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNH-----------NWFRGSIPETIG--  200 (629)
Q Consensus       137 L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~-----------n~l~~~~~~~~~--  200 (629)
                      |+|++|.+++... ..+..+.+|++|+|+ +.+.+.....++.  .+|++|+|++           |.+++.....+.  
T Consensus       298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~  376 (592)
T 3ogk_B          298 LDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG  376 (592)
T ss_dssp             EEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred             EecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence            7777777654322 334667777777777 3333222222222  6788888883           455543222222  


Q ss_pred             hhhhHHHHhcCCcccccCCccccC-CCCCcEEEcc----CCccccc-----CCcccccCCCCCCcEEEecCCc--ccccc
Q 043930          201 ESLARYIVLSSNNFTGCLPRSIGY-MKELQEIILM----ENQLSGC-----LPSEIGSGEYKNLTVFDIRSNK--FHGSV  268 (629)
Q Consensus       201 ~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~l~~~-----~p~~~~~~~l~~L~~L~Ls~n~--l~~~~  268 (629)
                      ..+|++|+++.|++++.....+.. +++|++|+|+    .|++++.     +...+.  .+.+|++|+|++|.  +++..
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~--~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI--GCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH--HCTTCCEEEEECCGGGCCHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH--hCCCCCEEEEecCCCCccHHH
Confidence            246888888888887665555554 7888888886    5666642     222233  57889999998653  66555


Q ss_pred             hHHhhc-ccCccceecccccccccc-cccccCCCCCcEEEecCCccCCcc-hhhhcCCCCCceecccCCccccccccCC
Q 043930          269 PQSFAN-LNNIMRLDISDNMLTGFV-SADICKLPHLLNFTFSNNFFQGMA-MECISGSRDDVYFEEKGNCLAEMEYQKL  344 (629)
Q Consensus       269 ~~~~~~-l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~  344 (629)
                      ...+.. +++|++|+|++|.+++.. ...+.++.+|++|+|++|.|++.. ...+..+++|++|+|++|.+++..+...
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence            555554 788999999999988643 344577899999999999987653 3445678999999999999987655443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=4.1e-20  Score=177.70  Aligned_cols=162  Identities=20%  Similarity=0.238  Sum_probs=118.7

Q ss_pred             CcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEE
Q 043930          107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDII  184 (629)
Q Consensus       107 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L  184 (629)
                      ..+|++|+|++|++.+.....|.++.+|++|+|++|+|++.....|..+.+|++|+|++|+|+ .++...+.  .+|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence            457889999999888777677888899999999999888766666788889999999998887 44444332  677777


Q ss_pred             EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcc
Q 043930          185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF  264 (629)
Q Consensus       185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l  264 (629)
                      +|++|.|++.                       ....|.++.+|++|+|++|+|++.....+.  .+.+|++|+|++|.+
T Consensus       106 ~L~~N~l~~~-----------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          106 ALNTNQLQSL-----------------------PDGVFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNPW  160 (208)
T ss_dssp             ECCSSCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCCB
T ss_pred             EcCCCcCccc-----------------------CHhHhccCCcCCEEECCCCccceeCHHHhc--cCCCccEEEecCCCe
Confidence            7777666522                       223456777888888888888754444444  678888888888877


Q ss_pred             cccchHHhhcccCccceecccccccccccccccCCCC
Q 043930          265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH  301 (629)
Q Consensus       265 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  301 (629)
                      .+       .+.+|++|++++|+++|.++..++.+..
T Consensus       161 ~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          161 DC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            63       3457788888888888877776665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=8.9e-21  Score=210.72  Aligned_cols=173  Identities=18%  Similarity=0.204  Sum_probs=81.9

Q ss_pred             hCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEE
Q 043930          105 GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDII  184 (629)
Q Consensus       105 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L  184 (629)
                      ..|.+|++|+|++|.|...  ..|..|.+|++|+|++|+|.+...  +..+.+|++|+|++|+|+ .+.......+|++|
T Consensus        40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L  114 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSL  114 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCTTSTTCTTCCEE
T ss_pred             hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CChhhccCCCCCEE
Confidence            3444455555555554432  134445555555555555544222  444555555555555554 22211111445555


Q ss_pred             EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcc
Q 043930          185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF  264 (629)
Q Consensus       185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l  264 (629)
                      +|++|.|.+ +.......+|+.|+|++|.|.+.  ..|+.|.+|++|+|++|.|.+..+  +.  .+.+|++|+|++|+|
T Consensus       115 ~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          115 SLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA--GLTKLQNLYLSKNHI  187 (605)
T ss_dssp             ECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCC
T ss_pred             EecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc--cCCCCCEEECcCCCC
Confidence            555444442 11110111222222222222222  345556666666666666664433  33  566666666666666


Q ss_pred             cccchHHhhcccCccceeccccccccc
Q 043930          265 HGSVPQSFANLNNIMRLDISDNMLTGF  291 (629)
Q Consensus       265 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~  291 (629)
                      ++.  ..|..|.+|+.|+|++|.|.+.
T Consensus       188 ~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          188 SDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCC--hHHccCCCCCEEEccCCcCcCC
Confidence            643  3456666666666666666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=2.2e-20  Score=189.45  Aligned_cols=170  Identities=19%  Similarity=0.286  Sum_probs=101.8

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      +.+|+.|++++|++...  ..+..+.+|++|+|++|++.+...  |.++.+|++|+|++|+|++ + ..+..+.+|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence            45566777777766543  346666777777777777665432  6667777777777776665 2 2366666677777


Q ss_pred             ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930          163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL  242 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  242 (629)
                      |++|+|+ .+.......+|++|+|++|.+++                       .  ..|+++.+|++|+|++|+|++..
T Consensus       119 L~~n~i~-~~~~l~~l~~L~~L~l~~n~l~~-----------------------~--~~l~~l~~L~~L~L~~N~l~~~~  172 (291)
T 1h6t_A          119 LEHNGIS-DINGLVHLPQLESLYLGNNKITD-----------------------I--TVLSRLTKLDTLSLEDNQISDIV  172 (291)
T ss_dssp             CTTSCCC-CCGGGGGCTTCCEEECCSSCCCC-----------------------C--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             CCCCcCC-CChhhcCCCCCCEEEccCCcCCc-----------------------c--hhhccCCCCCEEEccCCccccch
Confidence            7666665 33221112555555555555441                       1  23555667777777777766433


Q ss_pred             CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccc
Q 043930          243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG  290 (629)
Q Consensus       243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  290 (629)
                      +  +.  .+.+|++|+|++|.|++. . .+..+.+|+.|+|++|.+.+
T Consensus       173 ~--l~--~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          173 P--LA--GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             G--GT--TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             h--hc--CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            2  33  566777777777776642 2 36666677777777776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=1.6e-20  Score=190.38  Aligned_cols=195  Identities=16%  Similarity=0.192  Sum_probs=150.8

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD  162 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  162 (629)
                      +..+..+++..+.+.+.+  .+..+.+|++|++++|.+.+.  ..+..+.+|++|+|++|+|++...  +..+.+|++|+
T Consensus        23 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~   96 (291)
T 1h6t_A           23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF   96 (291)
T ss_dssp             HHHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence            344555567777665543  346788899999999988854  358889999999999999987543  88899999999


Q ss_pred             ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930          163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL  242 (629)
Q Consensus       163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  242 (629)
                      |++|+++ .+.......+|++|+|++|.+++.                         ..+..+.+|++|+|++|+|++. 
T Consensus        97 l~~n~l~-~~~~l~~l~~L~~L~L~~n~i~~~-------------------------~~l~~l~~L~~L~l~~n~l~~~-  149 (291)
T 1h6t_A           97 LDENKVK-DLSSLKDLKKLKSLSLEHNGISDI-------------------------NGLVHLPQLESLYLGNNKITDI-  149 (291)
T ss_dssp             CCSSCCC-CGGGGTTCTTCCEEECTTSCCCCC-------------------------GGGGGCTTCCEEECCSSCCCCC-
T ss_pred             CCCCcCC-CChhhccCCCCCEEECCCCcCCCC-------------------------hhhcCCCCCCEEEccCCcCCcc-
Confidence            9999987 444322227788888888877621                         2356778999999999999853 


Q ss_pred             CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcch
Q 043930          243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM  317 (629)
Q Consensus       243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  317 (629)
                       ..+.  .+.+|++|+|++|+|++...  +..+.+|++|+|++|.|+++  ..+.++.+|+.|+|++|.+.+...
T Consensus       150 -~~l~--~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          150 -TVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             -GGGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             -hhhc--cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCCcc
Confidence             4555  78999999999999986544  88899999999999999874  348889999999999998876543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=7.1e-21  Score=198.41  Aligned_cols=220  Identities=14%  Similarity=0.069  Sum_probs=110.2

Q ss_pred             cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCch-hhhhCCCCCcE-EEccCCcCccCCCchhcc--CCCCE
Q 043930          108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFP-TVALTWKRNLY-LDLRFNNFEGELPPELFQ--TGLDI  183 (629)
Q Consensus       108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~-L~Ls~n~l~~~ip~~~~~--~~L~~  183 (629)
                      ++|++|+|++|+|+.+..++|.++.+|++|+|++|++.+.++ ..|.++.+|++ +++++|+|+ .+....|.  .+|++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccccc
Confidence            345555555555554433445555555555555555543332 23444444443 334445554 33322222  45555


Q ss_pred             EEecCccccccCchhhh-hhhhHHHHhcC-CcccccCCccccCC-CCCcEEEccCCcccccCCcccccCCCCCCcEEEec
Q 043930          184 IFLNHNWFRGSIPETIG-ESLARYIVLSS-NNFTGCLPRSIGYM-KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR  260 (629)
Q Consensus       184 L~L~~n~l~~~~~~~~~-~~~L~~L~l~~-n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls  260 (629)
                      |++++|.|++.....+. ...+..|++.+ +++.......|..+ ..|++|+|++|+|+ .++..++  ...+|++|+++
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f--~~~~L~~l~l~  185 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF--NGTQLDELNLS  185 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS--TTEEEEEEECT
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhc--cccchhHHhhc
Confidence            55555555433222221 12334444433 33443333344444 35667777777776 4444444  34567777776


Q ss_pred             C-CcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCc
Q 043930          261 S-NKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNC  335 (629)
Q Consensus       261 ~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~  335 (629)
                      + |.++..-.+.|.++.+|++|||++|+|+.+....   +.+|+.|.+.++.-....+ .+.++.+|+.+++.++.
T Consensus       186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             cCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            4 4555333345677777777777777777543333   3344445444432222222 35566777777766543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=7.5e-21  Score=209.11  Aligned_cols=196  Identities=21%  Similarity=0.331  Sum_probs=133.7

Q ss_pred             CcCce-ecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCC
Q 043930           69 QYNGV-LCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP  147 (629)
Q Consensus        69 ~~~g~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  147 (629)
                      .|.++ .|.      ..+|+.|+|++|+|.+ ++..+  +.+|++|+|++|+|+. ++   ..+.+|++|+|++|.|++ 
T Consensus        49 ~~~~l~~C~------~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-  114 (571)
T 3cvr_A           49 AVSLLKECL------INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-  114 (571)
T ss_dssp             HHHHHHHHH------HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred             hhhhccccc------cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-
Confidence            46666 564      2469999999999987 66555  3789999999999984 55   567899999999999988 


Q ss_pred             chhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCC
Q 043930          148 FPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKE  227 (629)
Q Consensus       148 ~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  227 (629)
                      ++. +..  +|++|+|++|+|++ ++.  ...+|++|+|++|.|++ ++.  ...+|++|+|++|.|++ ++. |.  .+
T Consensus       115 ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~  181 (571)
T 3cvr_A          115 LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--ES  181 (571)
T ss_dssp             CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--TT
T ss_pred             cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--CC
Confidence            555 544  89999999999984 776  45889999999998885 443  22456666666666664 444 43  56


Q ss_pred             CcEEEccCCcccccCCcccccCCCCCC-------cEEEecCCcccccchHHhhcccCccceecccccccccccccccC
Q 043930          228 LQEIILMENQLSGCLPSEIGSGEYKNL-------TVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICK  298 (629)
Q Consensus       228 L~~L~Ls~n~l~~~~p~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  298 (629)
                      |++|+|++|+|+ .++. +.  .  +|       ++|+|++|+|+ .++..+..+.+|++|+|++|.|++.++..|.+
T Consensus       182 L~~L~Ls~N~L~-~lp~-~~--~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          182 LEALDVSTNLLE-SLPA-VP--V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CCEEECCSSCCS-SCCC-CC------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             CCEEECcCCCCC-chhh-HH--H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            666666666666 4444 33  1  44       66666666665 35555555666666666666666555544443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=1.3e-20  Score=207.36  Aligned_cols=188  Identities=22%  Similarity=0.327  Sum_probs=155.4

Q ss_pred             cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEec
Q 043930          108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLN  187 (629)
Q Consensus       108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~  187 (629)
                      .+|++|+|++|+|++ ++..+  +.+|++|+|++|+|+. ++   ..+.+|++|+|++|+|++ ++. +. .+|++|+|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECC
Confidence            389999999999987 55544  4789999999999995 55   567999999999999994 877 43 499999999


Q ss_pred             CccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc
Q 043930          188 HNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS  267 (629)
Q Consensus       188 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~  267 (629)
                      +|.|++ ++.  ...+|++|+|++|.|++ ++.   .+.+|++|+|++|.|++ ++. +.    .+|++|+|++|+|+ .
T Consensus       129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~----~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP----ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC----TTCCEEECCSSCCS-S
T ss_pred             CCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh----CCCCEEECcCCCCC-c
Confidence            999996 555  45689999999999986 554   57899999999999985 666 43    78999999999998 5


Q ss_pred             chHHhhcccCc-------cceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930          268 VPQSFANLNNI-------MRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS  323 (629)
Q Consensus       268 ~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  323 (629)
                      ++. |..  +|       ++|+|++|.|+. ++..+.++.+|++|+|++|.|++..+..|..+
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            555 544  67       999999999996 67777789999999999999999887776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.81  E-value=2.2e-21  Score=216.84  Aligned_cols=255  Identities=16%  Similarity=0.125  Sum_probs=179.7

Q ss_pred             CcccEEEEEcCCCCccc----cCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcC-------------
Q 043930           82 QERFVAMIDLNKAEIAA----HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL-------------  144 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-------------  144 (629)
                      ...+|+.|+|++|++.+    .+...+.++.+|++|+|++|.+.+ +...+.++.+|++|+++++..             
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            35679999999999873    344556778999999999999886 567788888888888874321             


Q ss_pred             -------------CCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhh-hh-hhhHHH
Q 043930          145 -------------VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETI-GE-SLARYI  207 (629)
Q Consensus       145 -------------~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~-~~-~~L~~L  207 (629)
                                   .+.++..+..+.+|++|+|++|.+++.....++.  .+|++|+|+ +.+.+.....+ .. .+|++|
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence                         1224445566778888888888765433222222  778888887 44433222222 22 468888


Q ss_pred             HhcC-----------Cccccc-CCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEec----CCccccc----
Q 043930          208 VLSS-----------NNFTGC-LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR----SNKFHGS----  267 (629)
Q Consensus       208 ~l~~-----------n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls----~n~l~~~----  267 (629)
                      +|++           |.+++. +...+.++.+|++|+|+.|++++.....+.. .+.+|++|+|+    .|.+++.    
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchHHH
Confidence            8883           455543 2223455789999999888888766666652 48899999996    6778763    


Q ss_pred             -chHHhhcccCccceeccccc--cccccccccc-CCCCCcEEEecCCccCCcc-hhhhcCCCCCceecccCCccccc
Q 043930          268 -VPQSFANLNNIMRLDISDNM--LTGFVSADIC-KLPHLLNFTFSNNFFQGMA-MECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       268 -~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                       +...+.++.+|++|+|++|.  +++.....+. .+.+|++|+|++|.+++.. ...+.++++|++|+|++|.|++.
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence             44557789999999998643  6655444443 4889999999999998744 44567899999999999998754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.8e-19  Score=170.92  Aligned_cols=177  Identities=17%  Similarity=0.156  Sum_probs=124.0

Q ss_pred             CEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecC
Q 043930          111 IYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNH  188 (629)
Q Consensus       111 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~  188 (629)
                      +.++++++.+.. ++..  ...+|++|+|++|+|++.....+..+.+|++|+|++|+|+ .++...+.  .+|++|+|++
T Consensus        10 ~~v~c~~~~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSS-CCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccC-CCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence            345555555553 2222  2468999999999999877777889999999999999998 55554433  6777777777


Q ss_pred             ccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc
Q 043930          189 NWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV  268 (629)
Q Consensus       189 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~  268 (629)
                      |.|++.                       ....|.++.+|++|+|++|+|++.....+.  .+.+|++|+|++|+|++..
T Consensus        86 n~l~~~-----------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~  140 (208)
T 2o6s_A           86 NQLQSL-----------------------PNGVFDKLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQLKSVP  140 (208)
T ss_dssp             SCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCC
T ss_pred             CcCCcc-----------------------CHhHhcCccCCCEEEcCCCcCcccCHhHhc--cCCcCCEEECCCCccceeC
Confidence            766521                       223456677888888888888744444444  6777888888888877665


Q ss_pred             hHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930          269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS  323 (629)
Q Consensus       269 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  323 (629)
                      ...|.++.+|++|+|++|.+.+       .+.+|++|++++|++++.++..+..+
T Consensus       141 ~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          141 DGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             HHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            5567777778888888776653       35577777777777777766655543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=1.6e-19  Score=200.59  Aligned_cols=200  Identities=14%  Similarity=0.206  Sum_probs=142.9

Q ss_pred             CcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEe
Q 043930          107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFL  186 (629)
Q Consensus       107 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L  186 (629)
                      +..+..++|..+.+.+.+  .+..|.+|++|+|++|.|...  ..+..+.+|++|+|++|+|+ .+.......+|++|+|
T Consensus        20 l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~L   94 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCC-CCGGGGGCTTCCEEEC
T ss_pred             HHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCC-CChhhccCCCCCEEEC
Confidence            345666777777777543  357889999999999999874  35889999999999999998 4554223389999999


Q ss_pred             cCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccc
Q 043930          187 NHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG  266 (629)
Q Consensus       187 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~  266 (629)
                      ++|.|.+ +.......+|++|+|++|.|.+.  ..|..|.+|+.|+|++|.|.+.  ..+.  .+.+|++|+|++|.|++
T Consensus        95 s~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~--~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           95 DENKIKD-LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CSSCCCC-CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG--SCTTCSEEECCSSCCCC
T ss_pred             cCCCCCC-ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc--ccCCCCEEECcCCcCCC
Confidence            9999984 33222235677777777777753  4567777777777777777743  3444  67777777777777775


Q ss_pred             cchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcC
Q 043930          267 SVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG  322 (629)
Q Consensus       267 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  322 (629)
                      ..+  |..+.+|++|+|++|.|.++  ..|..|.+|+.|+|++|.|.+.....+..
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~  219 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSN  219 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred             chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccccc
Confidence            544  67777777777777777764  35777777777777777776654433333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.79  E-value=1.1e-19  Score=206.99  Aligned_cols=253  Identities=15%  Similarity=0.150  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCC--CCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCE-----EE
Q 043930           42 VGLQAFKKAIYSDPYNHTENWVGT--DVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIY-----FH  114 (629)
Q Consensus        42 ~~l~~~~~~~~~~~~~~l~~~~~~--~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~-----L~  114 (629)
                      .++.++...+....+.....|...  ..+.|.+..+.      ..+++.|+|.+|++... ...+....+|..     ++
T Consensus       135 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~  207 (727)
T 4b8c_D          135 QALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS------TPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDD  207 (727)
T ss_dssp             HHHHHHHHHHHHHHTTC---------------------------------------------------------------
T ss_pred             hhhhhhhhhcccccCcccCCCcCCCCccccCCCceec------CCccceEEeeCCCCCcc-hhhHhhcCccCcccccCcc
Confidence            445555555544444444555432  33455555443      35688899988888663 222222222222     22


Q ss_pred             CCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccc
Q 043930          115 ANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRG  193 (629)
Q Consensus       115 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~  193 (629)
                      +..|++. ...+.|..+.+|++|+|++|.|.. ++..+..+.+|++|+|++|+|+ .++..+.. .+|++|+|++|.|+ 
T Consensus       208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred             cccccee-cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence            3333333 345667778888888888888774 5556667788888888888887 77766655 67777777777666 


Q ss_pred             cCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhh
Q 043930          194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA  273 (629)
Q Consensus       194 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  273 (629)
                                             .++..|++|.+|++|+|++|.|+ .++..|+  .|.+|++|+|++|.|++.++..|.
T Consensus       284 -----------------------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~--~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          284 -----------------------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFG--NLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             -----------------------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTT--SCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             -----------------------ccChhhcCCCCCCEEECCCCCCC-ccChhhh--cCCCccEEeCCCCccCCCChHHHh
Confidence                                   34455666777777777777776 6666665  677777777777777776666665


Q ss_pred             cccC-ccceecccccccccccccccCCCCCcEEEecCC--------ccCCcchhhhcCCCCCceecccCCccc
Q 043930          274 NLNN-IMRLDISDNMLTGFVSADICKLPHLLNFTFSNN--------FFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       274 ~l~~-L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N--------~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      .+.. +..|+|++|.+++.++.      .|+.|+|++|        .|.+.....+..+..+....+++|.+.
T Consensus       338 ~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          338 EKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred             hcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            5422 23466777777665544      3344455544        222222333334444455555555553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=9.1e-20  Score=190.01  Aligned_cols=218  Identities=11%  Similarity=0.047  Sum_probs=166.7

Q ss_pred             CEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCC-EEEec
Q 043930          111 IYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLD-IIFLN  187 (629)
Q Consensus       111 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~-~L~L~  187 (629)
                      ++++.++++++ .++..+  ..+|++|+|++|+|+..-...|.++.+|++|+|++|++.+.++...|.  .+|+ .++++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666777777 345444  368999999999999755567899999999999999998678877765  5655 46777


Q ss_pred             CccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccC-CcccccCCcccccCCCCCCcEEEecCCccc
Q 043930          188 HNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILME-NQLSGCLPSEIGSGEYKNLTVFDIRSNKFH  265 (629)
Q Consensus       188 ~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~  265 (629)
                      +|++++..+..+.. .+|++|++++|++.+.....+..+.++..|++.+ +++. .++...+.+....|++|+|++|+|+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence            89998766666655 5899999999999977666677777889999976 5566 4444332223357999999999999


Q ss_pred             ccchHHhhcccCccceeccc-ccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccC
Q 043930          266 GSVPQSFANLNNIMRLDISD-NMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKG  333 (629)
Q Consensus       266 ~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~  333 (629)
                      . +...+....+|++|+|++ |.++.+..+.|.++.+|++|||++|+|+.+....+.++.+|+.+++..
T Consensus       168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~  235 (350)
T 4ay9_X          168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  235 (350)
T ss_dssp             E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTT
T ss_pred             C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCC
Confidence            4 444444567899999985 677765556789999999999999999998777777777777666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=7.1e-20  Score=182.75  Aligned_cols=171  Identities=17%  Similarity=0.237  Sum_probs=124.0

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      .+..++.++|+++.+.+..  .+..+.+|++|+|++|+|... . .|..+.+|++|+|++|+|++...  +..+.+|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3445666777788776643  577888899999999888753 3 68888899999999998887443  8888889999


Q ss_pred             EccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc
Q 043930          162 DLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC  241 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  241 (629)
                      +|++|+|+ .++...+ .+|++|+|++|.|++.                         ..|.++.+|++|+|++|+|++.
T Consensus        91 ~L~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~~-------------------------~~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           91 SVNRNRLK-NLNGIPS-ACLSRLFLDNNELRDT-------------------------DSLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             ECCSSCCS-CCTTCCC-SSCCEEECCSSCCSBS-------------------------GGGTTCTTCCEEECTTSCCCBC
T ss_pred             ECCCCccC-CcCcccc-CcccEEEccCCccCCC-------------------------hhhcCcccccEEECCCCcCCCC
Confidence            99999887 4554434 7777887777776631                         2356677777777777777743


Q ss_pred             CCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccc
Q 043930          242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGF  291 (629)
Q Consensus       242 ~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  291 (629)
                       . .+.  .+.+|++|+|++|+|++.  ..+..+.+|++|+|++|.+.+.
T Consensus       144 -~-~l~--~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          144 -V-MLG--FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -G-GGG--GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -h-HHc--cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             2 344  677777777777777754  5667777777777777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=4.4e-22  Score=219.93  Aligned_cols=187  Identities=19%  Similarity=0.188  Sum_probs=108.3

Q ss_pred             cCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCc-------------CccCCCchhcc-CCCCEEE-ecCccccc
Q 043930          129 ANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNN-------------FEGELPPELFQ-TGLDIIF-LNHNWFRG  193 (629)
Q Consensus       129 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~~ip~~~~~-~~L~~L~-L~~n~l~~  193 (629)
                      ..+.+|+.|+|++|+|+. ++..++++.+|++|++++|.             +.+.++..+.. .+|+.|+ ++.|.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            345566666666666653 56666666666666665443             12122222221 3344433 333222  


Q ss_pred             cCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhh
Q 043930          194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA  273 (629)
Q Consensus       194 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  273 (629)
                              ..|+.+++.+|.+.....      ..|++|+|++|+|++ ++. ++  .+.+|++|+|++|+|+ .++..|+
T Consensus       423 --------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~--~l~~L~~L~Ls~N~l~-~lp~~~~  483 (567)
T 1dce_A          423 --------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LE--QLLLVTHLDLSHNRLR-ALPPALA  483 (567)
T ss_dssp             --------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GG--GGTTCCEEECCSSCCC-CCCGGGG
T ss_pred             --------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-cc--ccccCcEeecCccccc-ccchhhh
Confidence                    134444444444442211      246677777777763 454 44  5677777777777776 5666677


Q ss_pred             cccCccceecccccccccccccccCCCCCcEEEecCCccCCcc-hhhhcCCCCCceecccCCccccc
Q 043930          274 NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA-MECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       274 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      ++.+|++|+|++|.|++ ++ .|.++.+|++|+|++|+|+++. +..|.++.+|+.|+|++|.|++.
T Consensus       484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            77777777777777776 34 5667777777777777777665 66677777777777777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=2.2e-19  Score=187.91  Aligned_cols=175  Identities=19%  Similarity=0.194  Sum_probs=106.6

Q ss_pred             cEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhc-c-CCCCEEEecCccccccCchhhhhhhhHHHHhcCC
Q 043930          135 EEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF-Q-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSN  212 (629)
Q Consensus       135 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n  212 (629)
                      +.+++++|+|+. ++..+  ...|++|+|++|+|++.....+. . .+|++|+|++|.|++                   
T Consensus        21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-------------------   78 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-------------------   78 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-------------------
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-------------------
Confidence            567777777765 44333  23467777777777632222222 2 666666666666653                   


Q ss_pred             cccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc
Q 043930          213 NFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV  292 (629)
Q Consensus       213 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  292 (629)
                          .....|.++.+|++|+|++|+|++.....|.  .+.+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++.
T Consensus        79 ----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           79 ----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS--DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             ----ECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             ----cChhhccCCCCCCEEECCCCcCCcCCHHHhC--CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence                3334566666777777777776644444444  5667777777777776555666666777777777777776544


Q ss_pred             cccc---cCCCCCcEEEecCCccCCcchhhhcCCCC--CceecccCCccc
Q 043930          293 SADI---CKLPHLLNFTFSNNFFQGMAMECISGSRD--DVYFEEKGNCLA  337 (629)
Q Consensus       293 ~~~l---~~l~~L~~L~L~~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~  337 (629)
                      ...|   ..+.+|+.|+|++|+|+++....+..+..  |+.|+|.+|.|.
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            4334   45667777777777777666666666655  366777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.7e-18  Score=167.94  Aligned_cols=93  Identities=22%  Similarity=0.267  Sum_probs=52.3

Q ss_pred             ccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCC
Q 043930          220 RSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL  299 (629)
Q Consensus       220 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  299 (629)
                      ..|.++.+|++|+|++|+|++.....+.  .+.+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++.+..|..+
T Consensus        75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  152 (220)
T 2v70_A           75 GAFEGASGVNEILLTSNRLENVQHKMFK--GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL  152 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCGGGGT--TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred             HHhCCCCCCCEEECCCCccCccCHhHhc--CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC
Confidence            3455555666666666665544333343  45556666666666655555555555566666666666655555555555


Q ss_pred             CCCcEEEecCCccCC
Q 043930          300 PHLLNFTFSNNFFQG  314 (629)
Q Consensus       300 ~~L~~L~L~~N~l~~  314 (629)
                      .+|++|+|++|.|..
T Consensus       153 ~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          153 HSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTCCEEECCSCCEEC
T ss_pred             CCCCEEEecCcCCcC
Confidence            566666666655543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=4.6e-19  Score=171.95  Aligned_cols=150  Identities=23%  Similarity=0.325  Sum_probs=79.2

Q ss_pred             CcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCC
Q 043930          158 NLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMEN  236 (629)
Q Consensus       158 L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  236 (629)
                      -+.+++++++++ .++..+. .+|++|+|++|.|++.....+.. .+|++|+|++|+|.+..+..|.++.+|++|+|++|
T Consensus        13 ~~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            367889999887 7776654 67888888888877443333322 24444455555444444444444445555555555


Q ss_pred             cccccCCcc-cccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCcc
Q 043930          237 QLSGCLPSE-IGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFF  312 (629)
Q Consensus       237 ~l~~~~p~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l  312 (629)
                      +|+ .++.. +.  .+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|+++....|..+.+|++|+|++|.+
T Consensus        91 ~l~-~l~~~~f~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           91 KIT-ELPKSLFE--GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCC-CCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCC-ccCHhHcc--CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            444 22222 22  344455555555544444444444444445555555544444433444444444444444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=4.8e-18  Score=165.84  Aligned_cols=162  Identities=22%  Similarity=0.276  Sum_probs=109.3

Q ss_pred             CCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEE
Q 043930           59 TENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFD  138 (629)
Q Consensus        59 l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  138 (629)
                      ...|.+...|.|.++.|.                ++++.. ++..+  ..+|++|+|++|+|.+..+..|.++.+|++|+
T Consensus        10 ~~~~~~~~~Cs~~~v~c~----------------~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   70 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCR----------------SKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELY   70 (229)
T ss_dssp             -CCCCTTCEEETTEEECT----------------TSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             hccCCCCCEEeCCEeEcc----------------CCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEE
Confidence            345567788888877775                333422 33322  37889999999999888788888999999999


Q ss_pred             ccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccc
Q 043930          139 VSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTG  216 (629)
Q Consensus       139 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  216 (629)
                      |++|+|.......|..+.+|++|+|++|+|+ .++..++.  .+|++|+|++|.|+                        
T Consensus        71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~------------------------  125 (229)
T 3e6j_A           71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT------------------------  125 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC------------------------
T ss_pred             CCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc------------------------
Confidence            9999998766666788899999999999887 44443332  56666666666554                        


Q ss_pred             cCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccc
Q 043930          217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG  266 (629)
Q Consensus       217 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~  266 (629)
                      .++..+.++.+|++|+|++|+|++.....+.  .+.+|++|+|++|.+..
T Consensus       126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFD--RLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCTTGGGCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECTTSCBCT
T ss_pred             ccCcccccCCCCCEEECCCCcCCccCHHHHh--CCCCCCEEEeeCCCccC
Confidence            2233445566667777777766633333343  56666677777666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.76  E-value=3.5e-20  Score=207.11  Aligned_cols=254  Identities=10%  Similarity=-0.000  Sum_probs=149.8

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCC--------------------------CC----ccChhhhcCCC
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR--------------------------LC----GIIPETFANMH  132 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--------------------------l~----~~~~~~~~~l~  132 (629)
                      ..+|+.|+|++|...+.+...+.++.+|++|+++++.                          +.    +.+...+..+.
T Consensus       210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~  289 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS  289 (594)
T ss_dssp             CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred             CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence            3567777777762222245555566666666654331                          11    11233334567


Q ss_pred             CCcEEEccCCcCCCCc-hhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecC---------ccccccCchhhh
Q 043930          133 RLEEFDVSNNRLVGPF-PTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNH---------NWFRGSIPETIG  200 (629)
Q Consensus       133 ~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~---------n~l~~~~~~~~~  200 (629)
                      +|++|+|++|.+.+.. ...+..+.+|++|+|++| +++.....+..  .+|++|+|.+         +.+++.....+.
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~  368 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS  368 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence            7888888887765432 223456778888888777 43222222222  6788887733         344433222222


Q ss_pred             --hhhhHHHHhcCCcccccCCcccc-CCCCCcEEEcc--C----Cccccc-----CCcccccCCCCCCcEEEecCCcccc
Q 043930          201 --ESLARYIVLSSNNFTGCLPRSIG-YMKELQEIILM--E----NQLSGC-----LPSEIGSGEYKNLTVFDIRSNKFHG  266 (629)
Q Consensus       201 --~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls--~----n~l~~~-----~p~~~~~~~l~~L~~L~Ls~n~l~~  266 (629)
                        ..+|++|++.+|++++.....+. .+++|++|+|+  +    |++++.     +...+.  .+.+|++|+|++ .+++
T Consensus       369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~--~~~~L~~L~L~~-~l~~  445 (594)
T 2p1m_B          369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE--HCKDLRRLSLSG-LLTD  445 (594)
T ss_dssp             HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH--HCTTCCEEECCS-SCCH
T ss_pred             HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHh--hCCCccEEeecC-cccH
Confidence              24577777777777655444443 46788888887  3    444411     111122  567888888866 6665


Q ss_pred             cchHHhhc-ccCccceecccccccccccccc-cCCCCCcEEEecCCccCCcchh-hhcCCCCCceecccCCcccccc
Q 043930          267 SVPQSFAN-LNNIMRLDISDNMLTGFVSADI-CKLPHLLNFTFSNNFFQGMAME-CISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       267 ~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      .....+.. +.+|++|+|++|.+++.....+ .++.+|++|+|++|.+++.... .+..+++|++|++++|.++...
T Consensus       446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  522 (594)
T 2p1m_B          446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA  522 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred             HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence            55555555 7788888888888876544444 5578888888888888654433 3445778888888888775443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=8e-19  Score=175.13  Aligned_cols=172  Identities=18%  Similarity=0.257  Sum_probs=140.6

Q ss_pred             CCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEE
Q 043930          106 WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDII  184 (629)
Q Consensus       106 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L  184 (629)
                      .+.+|..|++++|.+.+..  .+..+.+|++|+|++|+|+. +. .+..+.+|++|+|++|+|+ .+.. +.. .+|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEE
Confidence            4667888899999998653  57889999999999999986 33 6888999999999999998 4554 333 889999


Q ss_pred             EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcc
Q 043930          185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF  264 (629)
Q Consensus       185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l  264 (629)
                      +|++|.+++.                        .. +.. .+|++|+|++|+|++ +. .+.  .+.+|++|+|++|+|
T Consensus        91 ~L~~N~l~~l------------------------~~-~~~-~~L~~L~L~~N~l~~-~~-~l~--~l~~L~~L~Ls~N~i  140 (263)
T 1xeu_A           91 SVNRNRLKNL------------------------NG-IPS-ACLSRLFLDNNELRD-TD-SLI--HLKNLEILSIRNNKL  140 (263)
T ss_dssp             ECCSSCCSCC------------------------TT-CCC-SSCCEEECCSSCCSB-SG-GGT--TCTTCCEEECTTSCC
T ss_pred             ECCCCccCCc------------------------Cc-ccc-CcccEEEccCCccCC-Ch-hhc--CcccccEEECCCCcC
Confidence            9998887732                        11 122 789999999999985 33 455  799999999999999


Q ss_pred             cccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcch
Q 043930          265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM  317 (629)
Q Consensus       265 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  317 (629)
                      ++.  ..+..+.+|++|+|++|.|.+.  ..+.++.+|++|+|++|.+.+...
T Consensus       141 ~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          141 KSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             CBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             CCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            964  3688999999999999999986  678899999999999999887643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=2e-18  Score=180.64  Aligned_cols=175  Identities=22%  Similarity=0.271  Sum_probs=128.3

Q ss_pred             EEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhc-CCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccC
Q 043930           87 AMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFA-NMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRF  165 (629)
Q Consensus        87 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  165 (629)
                      +.+++++++|.. ++..+.  ..|++|+|++|+|++.....|. ++.+|++|+|++|+|++.....|..+.+|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            368888888865 555443  4689999999999987777787 899999999999999987777888999999999999


Q ss_pred             CcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       166 n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      |+|+ .+....|.  .+|++|+|++|.|++                       .....|.++.+|++|+|++|+|+ .++
T Consensus        98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~-~l~  152 (361)
T 2xot_A           98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVV-----------------------VDRNAFEDMAQLQKLYLSQNQIS-RFP  152 (361)
T ss_dssp             SCCC-EECTTTTTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             CcCC-cCCHHHhCCCcCCCEEECCCCcccE-----------------------ECHHHhCCcccCCEEECCCCcCC-eeC
Confidence            9987 44443332  667777776666552                       23455677788888888888887 344


Q ss_pred             ccccc--CCCCCCcEEEecCCcccccchHHhhcccC--ccceeccccccc
Q 043930          244 SEIGS--GEYKNLTVFDIRSNKFHGSVPQSFANLNN--IMRLDISDNMLT  289 (629)
Q Consensus       244 ~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~  289 (629)
                      ..+..  ..+.+|++|+|++|+|++.....|..+.+  |+.|+|++|.+.
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            43321  15778888888888888666666777766  377788777775

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=4.3e-18  Score=162.11  Aligned_cols=111  Identities=15%  Similarity=0.198  Sum_probs=71.9

Q ss_pred             ccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccc-ccccccccccCCC
Q 043930          222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNM-LTGFVSADICKLP  300 (629)
Q Consensus       222 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~  300 (629)
                      |.++++|++|+|++|++++.....+.  .+.+|++|+|++|+|++.....|..+.+|++|+|++|. ++++ . .+.++.
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~  159 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPNLS--GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLP  159 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCCCT--TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCS
T ss_pred             hhcCCCCCEEEeECCccCcccChhhc--CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCC
Confidence            44566677777777777655555555  56777777777777766566667777777777777776 5443 3 466677


Q ss_pred             CCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930          301 HLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       301 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      +|++|+|++|.|+++.  .+..+++|++|++++|.|.+
T Consensus       160 ~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          160 ELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            7777777777776643  56667777777777777653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.75  E-value=1.4e-20  Score=210.38  Aligned_cols=115  Identities=15%  Similarity=0.155  Sum_probs=80.5

Q ss_pred             CCCCcEEEccCCcccccCCcccccCCCCCCcEEEec--C----Ccccc-----cchHHhhcccCccceeccccccccccc
Q 043930          225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR--S----NKFHG-----SVPQSFANLNNIMRLDISDNMLTGFVS  293 (629)
Q Consensus       225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls--~----n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~  293 (629)
                      +.+|++|++..|++++.....+.. .+.+|++|+|+  +    |++++     .+...+.++.+|++|+|++ .+++...
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            567777777777776544434431 46788888888  3    45552     1223356778888888877 6665555


Q ss_pred             ccccC-CCCCcEEEecCCccCCcchhhh-cCCCCCceecccCCccccccc
Q 043930          294 ADICK-LPHLLNFTFSNNFFQGMAMECI-SGSRDDVYFEEKGNCLAEMEY  341 (629)
Q Consensus       294 ~~l~~-l~~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~  341 (629)
                      ..+.. +.+|++|+|++|.+++.....+ .++++|++|+|++|.+++...
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~  498 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL  498 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence            55554 8899999999999987666555 678999999999999975543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=3.3e-18  Score=167.00  Aligned_cols=153  Identities=18%  Similarity=0.219  Sum_probs=91.0

Q ss_pred             CCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccC
Q 043930          157 RNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILME  235 (629)
Q Consensus       157 ~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  235 (629)
                      ..+.+++++++++ .++..+. .+|++|+|++|.|++..+..+.. .+|++|+|++|+|.+.....|.++.+|++|+|++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcC-ccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            4667899998887 7776554 78888888888888655544433 3555556666655544444455555566666666


Q ss_pred             CcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930          236 NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       236 n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      |+|++.....+.  .+.+|++|+|++|+|+ .++..+.++.+|++|+|++|+|+++....|.++.+|++|+|++|.+..
T Consensus        98 N~l~~l~~~~~~--~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           98 NQLTVLPSAVFD--RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCCCCCTTTTT--TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCCccChhHhC--cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            655533333333  4555666666666555 444555555555666666655555444445555555556665555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=3.4e-18  Score=165.82  Aligned_cols=152  Identities=20%  Similarity=0.181  Sum_probs=87.1

Q ss_pred             CEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecC
Q 043930          182 DIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRS  261 (629)
Q Consensus       182 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~  261 (629)
                      +.++++++.++ .++..+. ..|++|+|++|+|.+.....|.++.+|++|+|++|+|++..+..|.  .+.+|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ--GLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT--TCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh--CCcCCCEEECCC
Confidence            34555555555 3333332 3455566666666555445556666666666666666544455554  556666666666


Q ss_pred             CcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930          262 NKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       262 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      |+|++.....|.++.+|++|+|++|+|+++....|.++.+|++|+|++|.|+++..+.|..+.+|++|+|++|.|.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            6665444444555666666666666666555555556666666666666666655555555666666666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=7.3e-18  Score=160.46  Aligned_cols=154  Identities=10%  Similarity=0.150  Sum_probs=96.9

Q ss_pred             hCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEE
Q 043930          105 GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDII  184 (629)
Q Consensus       105 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L  184 (629)
                      +.+.+|++|+|++|+|.. ++ .+..+.+|++|+|++|.++..  ..+..+.+|++|+|++|++++.             
T Consensus        41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~-------------  103 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSD-------------  103 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGG-------------
T ss_pred             hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcc-------------
Confidence            455667777777777763 33 466677777777777755532  3455666666666666655421             


Q ss_pred             EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc-
Q 043930          185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK-  263 (629)
Q Consensus       185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~-  263 (629)
                                                       ....|+++.+|++|+|++|+|++..+..+.  .+.+|++|+|++|. 
T Consensus       104 ---------------------------------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~~  148 (197)
T 4ezg_A          104 ---------------------------------KIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGA  148 (197)
T ss_dssp             ---------------------------------GSCCCTTCTTCCEEECCSSBCBGGGHHHHT--TCSSCCEEECCSCTB
T ss_pred             ---------------------------------cChhhcCCCCCCEEEecCCccCcHhHHHHh--hCCCCCEEEccCCCC
Confidence                                             223355666777777777777655555555  67777777777776 


Q ss_pred             ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930          264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      ++ .+. .+.++.+|++|+|++|.|++..  .+.++.+|++|+|++|+|.+
T Consensus       149 i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          149 IT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             cc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            54 333 5677777777777777777632  56677777788887777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1e-17  Score=162.43  Aligned_cols=152  Identities=14%  Similarity=0.205  Sum_probs=82.5

Q ss_pred             CEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCch-hhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecC
Q 043930          111 IYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFP-TVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNH  188 (629)
Q Consensus       111 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~  188 (629)
                      ++|++++|+++. ++..+  ...+++|+|++|+|++... ..|..+.+|++|+|++|+|++.....+.. .+|++|+|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            356666666653 33322  2244566666666655322 23455566666666666655222222222 4455555555


Q ss_pred             ccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc
Q 043930          189 NWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV  268 (629)
Q Consensus       189 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~  268 (629)
                      |.|++                       .....|.++.+|++|+|++|+|++..+..+.  .+.+|++|+|++|+|++..
T Consensus        91 N~l~~-----------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A           91 NRLEN-----------------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFI--GLSSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             SCCCC-----------------------CCGGGGTTCSSCCEEECTTSCCCCBCTTSST--TCTTCSEEECTTSCCCCBC
T ss_pred             CccCc-----------------------cCHhHhcCCcCCCEEECCCCcCCeECHhHcC--CCccCCEEECCCCcCCEEC
Confidence            44442                       2223455566666666666666655555555  5666666666666666555


Q ss_pred             hHHhhcccCccceecccccccc
Q 043930          269 PQSFANLNNIMRLDISDNMLTG  290 (629)
Q Consensus       269 ~~~~~~l~~L~~L~Ls~N~l~~  290 (629)
                      +..|..+.+|++|+|++|.+..
T Consensus       146 ~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          146 PGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTTTTTCTTCCEEECCSCCEEC
T ss_pred             HHHhcCCCCCCEEEecCcCCcC
Confidence            6666666666666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.3e-18  Score=179.75  Aligned_cols=103  Identities=12%  Similarity=0.121  Sum_probs=78.3

Q ss_pred             CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCcc-ceecccccccccccccccCCCCCc
Q 043930          225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIM-RLDISDNMLTGFVSADICKLPHLL  303 (629)
Q Consensus       225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~  303 (629)
                      +.+|++|+|.+|+++ .++...+. +|.+|++|+|.+| ++.+....|.++.+|+ .|+|.+ .++.+....|.+|.+|+
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~-~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFA-QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhh-CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            678888888888887 44443332 6788888888887 6656667788888888 888877 66666667788888888


Q ss_pred             EEEecCCccCCcchhhhcCCCCCceecc
Q 043930          304 NFTFSNNFFQGMAMECISGSRDDVYFEE  331 (629)
Q Consensus       304 ~L~L~~N~l~~~~~~~l~~l~~L~~L~l  331 (629)
                      +|+|.+|.+..+...+|.++.+|+.|+.
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEeCCCccCccchhhhcCCcchhhhcc
Confidence            8888888888888888888888887764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=9e-19  Score=199.36  Aligned_cols=112  Identities=21%  Similarity=0.215  Sum_probs=54.6

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL  163 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  163 (629)
                      ..|+.|+|++|.|. .++..+.++.+|++|+|++|+|+ .++..|++|.+|++|+|++|+|+ .++..|..+.+|++|+|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            34455555555544 23344444555555555555554 34444555555555555555554 24444555555555555


Q ss_pred             cCCcCccCCCchhcc-CCCCEEEecCccccccCchhh
Q 043930          164 RFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETI  199 (629)
Q Consensus       164 s~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~  199 (629)
                      ++|.|+ .++..+.. .+|++|+|++|.|++.++..+
T Consensus       301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            555554 44444333 445555555555554444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=1.6e-19  Score=199.52  Aligned_cols=204  Identities=16%  Similarity=0.148  Sum_probs=169.7

Q ss_pred             hCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCc-------------CCCCchhhhhCCCCCcEEE-ccCCcCcc
Q 043930          105 GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNR-------------LVGPFPTVALTWKRNLYLD-LRFNNFEG  170 (629)
Q Consensus       105 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~  170 (629)
                      ..+.+|+.|+|++|+|. .++..+++|.+|++|++++|.             +.+.++..+..+.+|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56789999999999997 689999999999999998775             5566777888999999999 7777664 


Q ss_pred             CCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCC
Q 043930          171 ELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE  250 (629)
Q Consensus       171 ~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~  250 (629)
                               +|+.+++.+|.|++     +....|++|+|++|+|++ ++. |+++.+|++|+|++|+|+ .++..++  .
T Consensus       424 ---------~L~~l~l~~n~i~~-----l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~--~  484 (567)
T 1dce_A          424 ---------DLRSKFLLENSVLK-----MEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA--A  484 (567)
T ss_dssp             ---------HHHHHHHHHHHHHH-----HHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG--G
T ss_pred             ---------hhhhhhhhcccccc-----cCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh--c
Confidence                     34555566666552     122347778888888885 555 899999999999999999 8888887  8


Q ss_pred             CCCCcEEEecCCcccccchHHhhcccCccceecccccccccc-cccccCCCCCcEEEecCCccCCcch---hhhcCCCCC
Q 043930          251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV-SADICKLPHLLNFTFSNNFFQGMAM---ECISGSRDD  326 (629)
Q Consensus       251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L  326 (629)
                      +.+|++|+|++|+|++ ++ .|.++.+|++|+|++|.|++.. +..|.++.+|++|+|++|.|++...   ..+..+++|
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L  562 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  562 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence            9999999999999996 66 8999999999999999999876 8899999999999999999988743   344557888


Q ss_pred             ceecc
Q 043930          327 VYFEE  331 (629)
Q Consensus       327 ~~L~l  331 (629)
                      +.|++
T Consensus       563 ~~L~l  567 (567)
T 1dce_A          563 SSILT  567 (567)
T ss_dssp             SEEEC
T ss_pred             CccCC
Confidence            88864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=1.9e-16  Score=149.93  Aligned_cols=131  Identities=19%  Similarity=0.287  Sum_probs=88.5

Q ss_pred             cEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930          159 LYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL  238 (629)
Q Consensus       159 ~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  238 (629)
                      ++|++++|+|+ .++..++. +|++|+|++|.|++....                      ..|+++.+|++|+|++|+|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~-~l~~L~l~~n~i~~~~~~----------------------~~~~~l~~L~~L~Ls~N~l   66 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL-HTTELLLNDNELGRISSD----------------------GLFGRLPHLVKLELKRNQL   66 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT-TCSEEECCSCCCCSBCCS----------------------CSGGGCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCcC-cCccCCCC-CCCEEECCCCcCCccCCc----------------------cccccCCCCCEEECCCCCC
Confidence            56667777665 56654443 666666666666532211                      1356667777777777777


Q ss_pred             cccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCc
Q 043930          239 SGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM  315 (629)
Q Consensus       239 ~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  315 (629)
                      ++..+..+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|++..+..|..+.+|++|+|++|.|.+.
T Consensus        67 ~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           67 TGIEPNAFE--GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCBCTTTTT--TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcCHhHcC--CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            766566665  677777777777777766666677777777777777777776677777777777777777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=8.4e-17  Score=148.86  Aligned_cols=132  Identities=17%  Similarity=0.202  Sum_probs=108.7

Q ss_pred             HHHHhcCCccc-ccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceec
Q 043930          205 RYIVLSSNNFT-GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDI  283 (629)
Q Consensus       205 ~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  283 (629)
                      ++|++++|++. +.++..|..+.+|++|+|++|.|++.  ..+.  .+.+|++|+|++|+|++.++..+.++.+|++|+|
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC--CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc--cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            33444444443 34556677889999999999999854  5565  7899999999999999878888888999999999


Q ss_pred             cccccccccc-ccccCCCCCcEEEecCCccCCcch---hhhcCCCCCceecccCCcccccc
Q 043930          284 SDNMLTGFVS-ADICKLPHLLNFTFSNNFFQGMAM---ECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       284 s~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      ++|.|+++.. ..+.++.+|++|+|++|.|++...   ..+..+++|++|++++|.+.++.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            9999987532 678899999999999999998766   68889999999999999987654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=2.4e-16  Score=142.68  Aligned_cols=127  Identities=15%  Similarity=0.206  Sum_probs=106.0

Q ss_pred             hhHHHHhcCCccc-ccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccce
Q 043930          203 LARYIVLSSNNFT-GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL  281 (629)
Q Consensus       203 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  281 (629)
                      +|++|++++|.+. +.++..|..+.+|++|+|++|.|++.  ..+.  .+.+|++|+|++|+|++.++..+.++.+|++|
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC--CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh--cCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3455555555555 45666778899999999999999854  5555  78999999999999998788888889999999


Q ss_pred             eccccccccc-ccccccCCCCCcEEEecCCccCCcch---hhhcCCCCCceecccC
Q 043930          282 DISDNMLTGF-VSADICKLPHLLNFTFSNNFFQGMAM---ECISGSRDDVYFEEKG  333 (629)
Q Consensus       282 ~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~l~~  333 (629)
                      +|++|.|++. ....+.++.+|++|+|++|.+++...   ..+..+.+|++|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999974 33678999999999999999998866   6788999999999863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=3.4e-16  Score=148.27  Aligned_cols=129  Identities=16%  Similarity=0.248  Sum_probs=110.5

Q ss_pred             HHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcc-cccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930          206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSE-IGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS  284 (629)
Q Consensus       206 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  284 (629)
                      +|++++|+++ .++..+.  .+|++|+|++|+|++..... +.  .+.+|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus        12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            4455555554 4555443  38999999999998555443 55  79999999999999998888999999999999999


Q ss_pred             cccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      +|+|+++....|.++.+|++|+|++|+|+++....|..+.+|++|+|++|.|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            9999998888899999999999999999999999999999999999999998743

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=6.4e-16  Score=142.89  Aligned_cols=64  Identities=17%  Similarity=0.140  Sum_probs=34.7

Q ss_pred             CCCCCcEEEccCCcccccC-CcccccCCCCCCcEEEecCCcccccch---HHhhcccCccceeccccccc
Q 043930          224 YMKELQEIILMENQLSGCL-PSEIGSGEYKNLTVFDIRSNKFHGSVP---QSFANLNNIMRLDISDNMLT  289 (629)
Q Consensus       224 ~l~~L~~L~Ls~n~l~~~~-p~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~  289 (629)
                      ++.+|++|+|++|.|++.. ...+.  .+.+|++|+|++|.|++...   ..|..+++|++|++++|.+.
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~--~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLK--KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGS--SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             hCCCCCEEeccCCccCcchhHHHHh--cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            4556666666666665321 13333  45666666666666654333   34555556666666655554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=9.6e-16  Score=145.18  Aligned_cols=109  Identities=23%  Similarity=0.298  Sum_probs=72.3

Q ss_pred             CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEE
Q 043930          226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF  305 (629)
Q Consensus       226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  305 (629)
                      .+|++|+|++|+|+ .++..+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++|.|+++....|.++.+|++|
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~--~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGG--GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCc-hhHHHhh--cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence            46666777776666 5555554  56667777777776665555566666677777777777666655566666677777


Q ss_pred             EecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930          306 TFSNNFFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       306 ~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      +|++|.|+++....|..+.+|++|+|++|.+.
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            77777766666666666667777777776664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3e-15  Score=141.73  Aligned_cols=128  Identities=17%  Similarity=0.257  Sum_probs=92.2

Q ss_pred             cEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930          159 LYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL  238 (629)
Q Consensus       159 ~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  238 (629)
                      +++++++|+++ .++..++ .+|++|+|++|.|+                        .++..|.++.+|++|+|++|+|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~------------------------~ip~~~~~l~~L~~L~Ls~N~i   66 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFT------------------------LVPKELSNYKHLTLIDLSNNRI   66 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC-TTCCEEECCSSCCC------------------------SCCGGGGGCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCc------------------------hhHHHhhcccCCCEEECCCCcC
Confidence            46677777666 5655433 46666666666655                        2334566777888888888888


Q ss_pred             cccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930          239 SGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       239 ~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      ++.....|.  .+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|+++....|..+.+|++|+|++|.+..
T Consensus        67 ~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           67 STLSNQSFS--NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCCTTTTT--TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEeCHhHcc--CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            755555565  67888888888888887767778888888888888888887666667788888888888887754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=3e-16  Score=161.86  Aligned_cols=208  Identities=11%  Similarity=0.082  Sum_probs=128.2

Q ss_pred             CCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccc-----cC-chhhh-hhh
Q 043930          131 MHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRG-----SI-PETIG-ESL  203 (629)
Q Consensus       131 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~-----~~-~~~~~-~~~  203 (629)
                      +.+|++|+|.+ .++.+...+|.+|.+|++|+|.+|.+. .+....|...++.+.+..+....     .+ ...+. ...
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            77777777776 666555566777777777777777766 55556555433333333222100     00 00000 000


Q ss_pred             hH-HHHhcCCc-ccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccce
Q 043930          204 AR-YIVLSSNN-FTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL  281 (629)
Q Consensus       204 L~-~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  281 (629)
                      |+ .+.+.... +...+........+++.+.+.++-.. .....+. ..+.+|++|+|++|+++.+....|.++.+|++|
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~-~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIR-DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHH-HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHH-HhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            00 00000000 00000000011244555555544222 1111121 137899999999999997777789999999999


Q ss_pred             ecccccccccccccccCCCCCc-EEEecCCccCCcchhhhcCCCCCceecccCCccccccccCC
Q 043930          282 DISDNMLTGFVSADICKLPHLL-NFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKL  344 (629)
Q Consensus       282 ~Ls~N~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  344 (629)
                      +|.+| +..+....|.+|.+|+ .|+|.+ .++.+...+|.+|.+|+.|++.+|.+..+....+
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF  317 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF  317 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence            99998 8777778899999999 999998 8888888999999999999999999987765444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=2.6e-15  Score=158.58  Aligned_cols=240  Identities=12%  Similarity=0.096  Sum_probs=152.7

Q ss_pred             EEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccC
Q 043930           86 VAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRF  165 (629)
Q Consensus        86 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  165 (629)
                      ++.+.|.+ +++.+-..+|.++ +|+.++|.++ +..+-..+|.++ +|+.|+|.+ .++.....+|.+|.+|+.|+|.+
T Consensus       115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~  189 (401)
T 4fdw_A          115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK  189 (401)
T ss_dssp             CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred             ccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence            44444433 3444444556664 6888887665 555555667664 688888775 55554456677788888888887


Q ss_pred             CcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          166 NNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       166 n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      |+++ .+....|. .+|+.|+|.++ ++......|.. .+|+.|+|.++ +...-..+|.+ .+|+.|+|. +.++..-.
T Consensus       190 n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~  264 (401)
T 4fdw_A          190 TKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS  264 (401)
T ss_dssp             SCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT
T ss_pred             Ccce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEECh
Confidence            7777 66666665 77888887744 44333344433 36777777654 44344455665 677777773 44542333


Q ss_pred             cccccCCCCCCcEEEecCCccc-----ccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchh
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFH-----GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAME  318 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  318 (629)
                      ..|.  +|.+|+.|+|.+|.+.     ......|.++.+|+.|+|.+ .+..+....|.+|.+|+.|+|.+| ++.+...
T Consensus       265 ~aF~--~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~  340 (401)
T 4fdw_A          265 RAFY--YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS  340 (401)
T ss_dssp             TTTT--TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred             hHhh--CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence            3444  6777888887777654     23445677777788888773 466666667777778888887443 6666667


Q ss_pred             hhcCCCCCceecccCCcccccc
Q 043930          319 CISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       319 ~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      +|.++ +|+.|++.+|.+....
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBCC
T ss_pred             hCCCC-CCCEEEEcCCCCcccc
Confidence            77777 7888887777665443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.57  E-value=1.5e-14  Score=152.76  Aligned_cols=241  Identities=15%  Similarity=0.100  Sum_probs=174.3

Q ss_pred             cEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEcc
Q 043930           85 FVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLR  164 (629)
Q Consensus        85 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  164 (629)
                      +|+.++|..+ +..+...+|.++ +|+.|+|.+ .+..+-..+|.++.+|+.|+|.+|.++......|. +.+|+.|+|.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            5777887665 656555667664 688888876 56655667888888999999988888765445555 6888888887


Q ss_pred             CCcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccc---
Q 043930          165 FNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS---  239 (629)
Q Consensus       165 ~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~---  239 (629)
                      ++ ++ .|....|.  .+|+.|+|.++ ++......|....|+.|+| .+++...-..+|.+|.+|+.|+|.+|.+.   
T Consensus       212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~  287 (401)
T 4fdw_A          212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP  287 (401)
T ss_dssp             TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred             Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence            54 55 66666665  68888888765 4434444555567777877 44555555678888889999988887664   


Q ss_pred             --ccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcch
Q 043930          240 --GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM  317 (629)
Q Consensus       240 --~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  317 (629)
                        ......|.  +|.+|+.|+|.+ .++......|.++.+|+.|+|.+| ++.+....|.++ +|+.|+|.+|.+..+..
T Consensus       288 ~~~I~~~aF~--~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~  362 (401)
T 4fdw_A          288 EAMIHPYCLE--GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE  362 (401)
T ss_dssp             TCEECTTTTT--TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred             ccEECHHHhh--CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence              12223333  788899999884 466566677888888999988655 666666778888 89999999888887777


Q ss_pred             hhhcCC-CCCceecccCCcccc
Q 043930          318 ECISGS-RDDVYFEEKGNCLAE  338 (629)
Q Consensus       318 ~~l~~l-~~L~~L~l~~N~l~~  338 (629)
                      ..|.++ ..++.|++..+.+..
T Consensus       363 ~~F~~~~~~l~~l~vp~~~~~~  384 (401)
T 4fdw_A          363 KVWYGFPDDITVIRVPAESVEK  384 (401)
T ss_dssp             SSCCCSCTTCCEEEECGGGHHH
T ss_pred             ccccCCCCCccEEEeCHHHHHH
Confidence            777777 477888888776653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=5e-15  Score=138.11  Aligned_cols=130  Identities=20%  Similarity=0.227  Sum_probs=65.4

Q ss_pred             CCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEec
Q 043930          181 LDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR  260 (629)
Q Consensus       181 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls  260 (629)
                      .+.|++++|.++ .++..+. .+|++|++++|++.+.....|.++.+|++|+|++|+|++.....+.  .+.+|++|+|+
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD--KLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc--CCCccCEEECC
Confidence            456666666665 2232221 3455555555555544444445555555555555555532222233  45555555555


Q ss_pred             CCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930          261 SNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       261 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      +|+|++.....|.++.+|++|+|++|.|+++....|.++.+|++|+|++|.+.+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            555554444444555555555555555554433334445555555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=2.9e-15  Score=135.49  Aligned_cols=127  Identities=19%  Similarity=0.262  Sum_probs=72.9

Q ss_pred             CCCcEEEccCCcCC-CCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhc
Q 043930          132 HRLEEFDVSNNRLV-GPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLS  210 (629)
Q Consensus       132 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~  210 (629)
                      .+|++|+|++|.+. +.++..+..+.+|++|+|++|++++ +                                      
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~--------------------------------------   57 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I--------------------------------------   57 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C--------------------------------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c--------------------------------------
Confidence            45666666666665 4455555556666666666665542 1                                      


Q ss_pred             CCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc-chHHhhcccCccceeccccccc
Q 043930          211 SNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS-VPQSFANLNNIMRLDISDNMLT  289 (629)
Q Consensus       211 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~  289 (629)
                               ..|+++.+|++|+|++|.|++.++..+.  .+.+|++|+|++|+|++. ....+.++++|++|+|++|.|+
T Consensus        58 ---------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           58 ---------ANLPKLNKLKKLELSDNRVSGGLEVLAE--KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             ---------TTCCCCTTCCEEECCSSCCCSCTHHHHH--HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             ---------hhhhcCCCCCEEECCCCcccchHHHHhh--hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence                     2344555666666666666644444443  456666666666666542 2245666666666666666666


Q ss_pred             cccc---ccccCCCCCcEEEec
Q 043930          290 GFVS---ADICKLPHLLNFTFS  308 (629)
Q Consensus       290 ~~~~---~~l~~l~~L~~L~L~  308 (629)
                      +...   ..+..+.+|++||++
T Consensus       127 ~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          127 NLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GSTTHHHHHHHHCTTCCEETTB
T ss_pred             chHHHHHHHHHHCCCcccccCC
Confidence            5433   345666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=5.9e-15  Score=137.61  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=86.0

Q ss_pred             HHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930          205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS  284 (629)
Q Consensus       205 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  284 (629)
                      +.+++++|++.. ++..+  ..+|++|+|++|+|++.....+.  .+.+|++|+|++|+|++.....|.++.+|++|+|+
T Consensus        10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            445666666653 33222  25777777777777744433444  56777777777777775555556777777777777


Q ss_pred             cccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930          285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      +|.|++.....|.++.+|++|+|++|.|+++....+..+.+|++|+|++|.|.+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            777776655556677777777777777777666666677777777777777654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=1.1e-16  Score=152.44  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=60.9

Q ss_pred             CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccc-ccccCCCCCc
Q 043930          225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVS-ADICKLPHLL  303 (629)
Q Consensus       225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~  303 (629)
                      +.+|++|+|++|.|+ .++..+.  .+.+|++|+|++|+|++ ++ .+..+.+|++|+|++|.|++... ..+.++.+|+
T Consensus        69 l~~L~~L~l~~n~l~-~l~~~~~--~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~  143 (198)
T 1ds9_A           69 MENLRILSLGRNLIK-KIENLDA--VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             HTTCCEEEEEEEEEC-SCSSHHH--HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred             CCCCCEEECCCCCcc-cccchhh--cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence            344555555555554 3333333  34556666666666653 22 46666666667776666665322 3466666777


Q ss_pred             EEEecCCccCCcch----------hhhcCCCCCceecccCCcccc
Q 043930          304 NFTFSNNFFQGMAM----------ECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       304 ~L~L~~N~l~~~~~----------~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      +|+|++|.+.+...          ..+..+.+|++||  +|.++.
T Consensus       144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            77777776654432          2366677777776  555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=7.4e-15  Score=136.87  Aligned_cols=87  Identities=13%  Similarity=0.065  Sum_probs=36.9

Q ss_pred             CCCCcEEEecCCcccccchHHhhcccCccceeccccccccccc-ccccCCCCCcEEEecCCccCCcchh---hhcCCCCC
Q 043930          251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVS-ADICKLPHLLNFTFSNNFFQGMAME---CISGSRDD  326 (629)
Q Consensus       251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~---~l~~l~~L  326 (629)
                      +.+|++|+|++|+|++.....|..+.+|++|+|++|.|++... ..+.++.+|++|+|++|.+..+...   .+..+.+|
T Consensus        63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcc
Confidence            4444444444444443222223444444444444444432111 1344444445555555444433221   24445555


Q ss_pred             ceecccCCccc
Q 043930          327 VYFEEKGNCLA  337 (629)
Q Consensus       327 ~~L~l~~N~l~  337 (629)
                      ++||+++|.+.
T Consensus       143 ~~Ld~~~n~~~  153 (176)
T 1a9n_A          143 RVLDFQKVKLK  153 (176)
T ss_dssp             SEETTEECCHH
T ss_pred             ceeCCCcCCHH
Confidence            55555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=2.2e-16  Score=150.34  Aligned_cols=86  Identities=15%  Similarity=0.155  Sum_probs=52.4

Q ss_pred             hhCCcCCCEEECCCCCCCccChh------hhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhc
Q 043930          104 MGWLLDLIYFHANTNRLCGIIPE------TFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF  177 (629)
Q Consensus       104 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~  177 (629)
                      +.....++.++++++++.+.++.      .|.++.+|++|+|++|.|++ ++ .+..+.+|++|+|++|+|+ .++..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34445555666666655554443      67777777777777777766 44 5666777777777777766 4554433


Q ss_pred             c-CCCCEEEecCcccc
Q 043930          178 Q-TGLDIIFLNHNWFR  192 (629)
Q Consensus       178 ~-~~L~~L~L~~n~l~  192 (629)
                      . .+|++|+|++|.|+
T Consensus        91 ~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           91 VADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHCSEEEEEEEECC
T ss_pred             cCCcCCEEECcCCcCC
Confidence            3 55556665555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=2.3e-14  Score=133.47  Aligned_cols=90  Identities=17%  Similarity=0.222  Sum_probs=58.7

Q ss_pred             cccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchH--HhhcccCccceecccccccccccc----
Q 043930          221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ--SFANLNNIMRLDISDNMLTGFVSA----  294 (629)
Q Consensus       221 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----  294 (629)
                      .|.++.+|++|+|++|+|++.....+.  .+.+|++|+|++|+|+ .++.  .+..+.+|++|+|++|.|... +.    
T Consensus        59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~  134 (176)
T 1a9n_A           59 GFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLY  134 (176)
T ss_dssp             CCCCCSSCCEEECCSSCCCEECSCHHH--HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHH
T ss_pred             ccccCCCCCEEECCCCcccccCcchhh--cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHH
Confidence            355667777777777777633222224  5677777777777775 3333  566777777777777777643 33    


Q ss_pred             cccCCCCCcEEEecCCccCC
Q 043930          295 DICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       295 ~l~~l~~L~~L~L~~N~l~~  314 (629)
                      .+..+.+|++||+++|.+..
T Consensus       135 ~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          135 VIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HHHHCTTCSEETTEECCHHH
T ss_pred             HHHHCCccceeCCCcCCHHH
Confidence            36677777777777776654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.50  E-value=1.6e-15  Score=158.58  Aligned_cols=168  Identities=14%  Similarity=0.117  Sum_probs=82.4

Q ss_pred             cCCCEEECCCCCCCccChhhhcC-----CCCCcEEEccCCcCCCCchhhh-hCCCCCcEEEccCCcCccCCCchhc----
Q 043930          108 LDLIYFHANTNRLCGIIPETFAN-----MHRLEEFDVSNNRLVGPFPTVA-LTWKRNLYLDLRFNNFEGELPPELF----  177 (629)
Q Consensus       108 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~ip~~~~----  177 (629)
                      .+|++|+|++|+|+......|..     ..+|++|+|++|.|.+.....+ ..+.+|++|+|++|+|++.....+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56777777777776433233222     2567777777776654322222 2345566666666666532222211    


Q ss_pred             --cCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC----CcccccCCC
Q 043930          178 --QTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL----PSEIGSGEY  251 (629)
Q Consensus       178 --~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~~~l  251 (629)
                        ..+|++|+|++|.|++.....                   +...+..+.+|++|+|++|.|++..    ...+.  .+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~-------------------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~--~~  210 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAV-------------------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD--RN  210 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHH-------------------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG--GC
T ss_pred             hcCCccceeeCCCCCCChHHHHH-------------------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh--cC
Confidence              144555555555554211110                   1122334455666666666665321    22222  34


Q ss_pred             CCCcEEEecCCccccc----chHHhhcccCccceecccccccccccccc
Q 043930          252 KNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNMLTGFVSADI  296 (629)
Q Consensus       252 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  296 (629)
                      .+|++|+|++|.|++.    +...+..+.+|++|||++|.|++.....|
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            5566666666666532    22233344556666666666554433333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.49  E-value=1.7e-15  Score=158.40  Aligned_cols=85  Identities=12%  Similarity=-0.048  Sum_probs=36.4

Q ss_pred             cEEEEEcCCCCccccCchhhhCC-----cCCCEEECCCCCCCccChhhh-cCCCCCcEEEccCCcCCCCchhhh-----h
Q 043930           85 FVAMIDLNKAEIAAHLPPEMGWL-----LDLIYFHANTNRLCGIIPETF-ANMHRLEEFDVSNNRLVGPFPTVA-----L  153 (629)
Q Consensus        85 ~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l-----~  153 (629)
                      .|+.|+|++|+|+......|..+     .+|++|+|++|.|++.....+ ..+.+|++|+|++|.|++.....+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            35555555555543322222221     455555555555543211111 123345555555555543222222     1


Q ss_pred             CCCCCcEEEccCCcCc
Q 043930          154 TWKRNLYLDLRFNNFE  169 (629)
Q Consensus       154 ~l~~L~~L~Ls~n~l~  169 (629)
                      ...+|++|+|++|.|+
T Consensus       153 ~~~~L~~L~Ls~n~l~  168 (372)
T 3un9_A          153 DQCQITTLRLSNNPLT  168 (372)
T ss_dssp             TTCCCCEEECCSSCCH
T ss_pred             cCCccceeeCCCCCCC
Confidence            2344555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=8.5e-14  Score=128.85  Aligned_cols=103  Identities=21%  Similarity=0.318  Sum_probs=49.8

Q ss_pred             HHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccc
Q 043930          206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD  285 (629)
Q Consensus       206 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  285 (629)
                      +|++++|+++. ++..+.  .+|++|+|++|+|++..+..+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++
T Consensus        13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            44455555442 333221  4455555555555543344443  455555555555555544444444555555555555


Q ss_pred             ccccccccccccCCCCCcEEEecCCccC
Q 043930          286 NMLTGFVSADICKLPHLLNFTFSNNFFQ  313 (629)
Q Consensus       286 N~l~~~~~~~l~~l~~L~~L~L~~N~l~  313 (629)
                      |+|+++....|.++.+|++|+|++|.|.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555444344455555555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=2.2e-13  Score=126.56  Aligned_cols=104  Identities=22%  Similarity=0.305  Sum_probs=57.2

Q ss_pred             HHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccc
Q 043930          206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD  285 (629)
Q Consensus       206 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  285 (629)
                      .+++++|+++ .++..+.  .+|++|+|++|+|++..+..+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4555555554 3343332  5566666666666544444444  556666666666666544444455566666666666


Q ss_pred             ccccccccccccCCCCCcEEEecCCccCC
Q 043930          286 NMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       286 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      |+|+++....|.++.+|++|+|++|.|..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            66655444445556666666666665553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=1.3e-13  Score=127.64  Aligned_cols=108  Identities=18%  Similarity=0.210  Sum_probs=89.4

Q ss_pred             CCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEE
Q 043930          227 ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFT  306 (629)
Q Consensus       227 ~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  306 (629)
                      ..++|++++|+|+ .++..+.    .+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++....|.++.+|++|+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEeCCCCcC-ccCccCC----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            3578889888888 5666543    6788999999999877788888888999999999998887767778888999999


Q ss_pred             ecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          307 FSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       307 L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      |++|+|+++..+.|.++.+|++|+|++|.|.+.
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            999999888877888888999999999887643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=1.4e-12  Score=121.12  Aligned_cols=105  Identities=16%  Similarity=0.186  Sum_probs=74.9

Q ss_pred             cEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEec
Q 043930          229 QEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFS  308 (629)
Q Consensus       229 ~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  308 (629)
                      +.|++++|+++ .++..+.    .+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++....|.++.+|++|+|+
T Consensus        15 ~~l~~~~n~l~-~iP~~~~----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCcC----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            56777777775 5665443    567777777777776666677777777777777777776555556677777777777


Q ss_pred             CCccCCcchhhhcCCCCCceecccCCcccc
Q 043930          309 NNFFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       309 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      +|+|.++....|.++.+|++|+|++|.|.+
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            777777666667777777777777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.26  E-value=1.9e-11  Score=126.71  Aligned_cols=163  Identities=14%  Similarity=0.118  Sum_probs=96.4

Q ss_pred             chhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCC
Q 043930          148 FPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKE  227 (629)
Q Consensus       148 ~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  227 (629)
                      +...+..+++|+.|+|++|.-. .+.. +...+|++|+|..|.+....        ++.|.             ...+++
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~--------l~~l~-------------~~~lp~  220 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSV--------VEDIL-------------GSDLPN  220 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHH--------HHHHH-------------HSBCTT
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHH--------HHHHH-------------HccCCC
Confidence            3445566677777777766311 2222 22367777777766655221        11111             124567


Q ss_pred             CcEEEccC--Cccccc-----CCcccccCCCCCCcEEEecCCcccccchHHhh---cccCccceecccccccccccc---
Q 043930          228 LQEIILME--NQLSGC-----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA---NLNNIMRLDISDNMLTGFVSA---  294 (629)
Q Consensus       228 L~~L~Ls~--n~l~~~-----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~---  294 (629)
                      |++|+|+.  |...+.     +...+..+.+.+|++|+|.+|.+.+.....+.   .+++|++|+|++|.|++....   
T Consensus       221 L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~  300 (362)
T 2ra8_A          221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL  300 (362)
T ss_dssp             CCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred             CcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence            77777653  221111     11122212467888888888888754444443   467889999988888764332   


Q ss_pred             -cccCCCCCcEEEecCCccCCcchhhhcC-CCCCceecccCCc
Q 043930          295 -DICKLPHLLNFTFSNNFFQGMAMECISG-SRDDVYFEEKGNC  335 (629)
Q Consensus       295 -~l~~l~~L~~L~L~~N~l~~~~~~~l~~-l~~L~~L~l~~N~  335 (629)
                       .+..+.+|+.|+|++|.|++.....|.. +  ...+++++|.
T Consensus       301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence             3345688999999999888766555553 3  4567777776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=9.7e-12  Score=128.88  Aligned_cols=104  Identities=16%  Similarity=0.205  Sum_probs=73.4

Q ss_pred             HHhcCC-cccccCCccccCCCCCcEEEccC-CcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930          207 IVLSSN-NFTGCLPRSIGYMKELQEIILME-NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS  284 (629)
Q Consensus       207 L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  284 (629)
                      ++++++ +|+ .++. |..+.+|++|+|++ |+|++.....|.  .|.+|++|+|++|+|++..+..|.+|.+|++|+|+
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            456665 666 3666 77777788888875 777755555565  67778888888888877777777777888888888


Q ss_pred             cccccccccccccCCCCCcEEEecCCccCCc
Q 043930          285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGM  315 (629)
Q Consensus       285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  315 (629)
                      +|+|+++....|..+. |++|+|.+|.|...
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            8887765555555454 77888887777643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.22  E-value=9.9e-12  Score=131.25  Aligned_cols=220  Identities=11%  Similarity=0.054  Sum_probs=154.2

Q ss_pred             chhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-C
Q 043930          101 PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-T  179 (629)
Q Consensus       101 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~  179 (629)
                      ..+|.++.+|+.+.|.++. ..+...+|.++.+|+.++|..+ ++......+.++..|+.+++.++...  +.+..+. .
T Consensus       155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~  230 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT  230 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred             hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence            4567888899999987653 3345567888889999988776 44444566788888888888766543  3333333 7


Q ss_pred             CCCEEEecCccccccCchhh-hhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEE
Q 043930          180 GLDIIFLNHNWFRGSIPETI-GESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFD  258 (629)
Q Consensus       180 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~  258 (629)
                      +|+.+.+..+... .....+ +...|+.+.+..+... .....|.++..|+.+.+..+.+.+   ..+.  .+.+|+.+.
T Consensus       231 ~l~~i~ip~~~~~-i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~---~~F~--~~~~L~~i~  303 (394)
T 4fs7_A          231 GVKNIIIPDSFTE-LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE---KTFY--GCSSLTEVK  303 (394)
T ss_dssp             CCCEEEECTTCCE-ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT---TTTT--TCTTCCEEE
T ss_pred             CCceEEECCCcee-cccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc---cccc--ccccccccc
Confidence            7888888654321 111222 2235566666554332 445667788888888887665431   2333  688999999


Q ss_pred             ecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCC
Q 043930          259 IRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGN  334 (629)
Q Consensus       259 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N  334 (629)
                      +.++ ++.+....|.++.+|+.|+|.++ ++.+....|.+|.+|+.++|..| +..+...+|.+|.+|+.+++..+
T Consensus       304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            9765 55455567889999999999755 66666778999999999999876 77788889999999999998754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=1e-11  Score=128.76  Aligned_cols=105  Identities=17%  Similarity=0.170  Sum_probs=84.5

Q ss_pred             cEEEccCC-cccccCCcccccCCCCCCcEEEecC-CcccccchHHhhcccCccceecccccccccccccccCCCCCcEEE
Q 043930          229 QEIILMEN-QLSGCLPSEIGSGEYKNLTVFDIRS-NKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFT  306 (629)
Q Consensus       229 ~~L~Ls~n-~l~~~~p~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  306 (629)
                      ..++++++ +|+ .++. +.  .+.+|++|+|++ |+|++.....|.+|.+|++|+|++|+|+++.+..|.+|.+|++|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCC-ccCC-CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            35678877 777 5777 66  778888888885 888877777888888888888888888887777888888888888


Q ss_pred             ecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930          307 FSNNFFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       307 L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      |++|+|+++....|..+. |++|+|.+|.|.+
T Consensus        87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            888888887776666665 8888888888774

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.21  E-value=8.3e-11  Score=124.11  Aligned_cols=113  Identities=11%  Similarity=0.123  Sum_probs=87.8

Q ss_pred             CccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccC
Q 043930          219 PRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICK  298 (629)
Q Consensus       219 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  298 (629)
                      ..+|.++.+|+.+.|.++... .....+.  ++.+|+.+++. +.++......|.++.+|+.++|.++ ++.+....|.+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~--~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFM--NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTT--TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cceeeecccccEEecccccce-ecCcccc--cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            356778888999988766543 3333444  78899999996 4455455677899999999999865 66666678999


Q ss_pred             CCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930          299 LPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       299 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      |.+|++|.|..+ ++.+...+|.+|.+|+.+++.+|...
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~  370 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ  370 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred             CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence            999999999654 77888889999999999999987654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.17  E-value=2.2e-11  Score=126.26  Aligned_cols=208  Identities=8%  Similarity=0.064  Sum_probs=136.0

Q ss_pred             CcccEEEEEcCCCCccc-c-------CchhhhCCcCCCEEECCCCCCC---------ccChhhhcCCCCCcEEEccCCcC
Q 043930           82 QERFVAMIDLNKAEIAA-H-------LPPEMGWLLDLIYFHANTNRLC---------GIIPETFANMHRLEEFDVSNNRL  144 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~-~-------~p~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l  144 (629)
                      ...+++.|.|..+.+.+ .       +..++.++.+|+.|.|.++.+.         +.+...+..+++|++|+|++|.-
T Consensus       105 ~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~  184 (362)
T 2ra8_A          105 KLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN  184 (362)
T ss_dssp             TGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred             CchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence            34457777777665542 1       2334566789999998765431         23556678889999999998831


Q ss_pred             CCCchhhhhCCCCCcEEEccCCcCccCCCchhc---cCCCCEEEecCc--cccccC-chhhhhhhhHHHHhcCCcccccC
Q 043930          145 VGPFPTVALTWKRNLYLDLRFNNFEGELPPELF---QTGLDIIFLNHN--WFRGSI-PETIGESLARYIVLSSNNFTGCL  218 (629)
Q Consensus       145 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~---~~~L~~L~L~~n--~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~  218 (629)
                      .. +.. + .+.+|++|+|..|.+.......+.   ..+|++|+|+.+  ...+.. ...+     .          ..+
T Consensus       185 l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l-----~----------~~l  246 (362)
T 2ra8_A          185 LS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF-----R----------PLF  246 (362)
T ss_dssp             CB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT-----G----------GGS
T ss_pred             ce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH-----H----------HHH
Confidence            11 222 3 378999999999988754433443   278999998642  222110 0000     0          000


Q ss_pred             CccccCCCCCcEEEccCCcccccCCccccc-CCCCCCcEEEecCCcccccc----hHHhhcccCccceeccccccccccc
Q 043930          219 PRSIGYMKELQEIILMENQLSGCLPSEIGS-GEYKNLTVFDIRSNKFHGSV----PQSFANLNNIMRLDISDNMLTGFVS  293 (629)
Q Consensus       219 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~  293 (629)
                        ....+++|++|+|.+|.+.+.....+.. ..+.+|++|+|+.|.|++..    ...+..+++|++|+|++|.|++...
T Consensus       247 --~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          247 --SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             --CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             --hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence              0134689999999999987544333321 24789999999999998643    3334567999999999999987655


Q ss_pred             ccccC-CCCCcEEEecCCc
Q 043930          294 ADICK-LPHLLNFTFSNNF  311 (629)
Q Consensus       294 ~~l~~-l~~L~~L~L~~N~  311 (629)
                      ..|.. +  ...+++++|.
T Consensus       325 ~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          325 KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHc--CCEEEecCCc
Confidence            55554 3  4678998887

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.11  E-value=5.4e-10  Score=117.84  Aligned_cols=245  Identities=13%  Similarity=0.022  Sum_probs=145.9

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCc------------------
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNR------------------  143 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~------------------  143 (629)
                      .+.+|+.++|.. .++.+...+|.++.+|+.++|.++ +..+-..+|.++.+|+.+.+..+-                  
T Consensus        69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~  146 (394)
T 4fs7_A           69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI  146 (394)
T ss_dssp             TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred             CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence            346789999864 466666678888999999999765 444445677777777776654331                  


Q ss_pred             ---CCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcc---
Q 043930          144 ---LVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNF---  214 (629)
Q Consensus       144 ---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l---  214 (629)
                         +......+|.++.+|+.++|.++..  .+....|.  .+|+.++|..+ ++......+.. ..|+.+.+..+..   
T Consensus       147 ~~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~  223 (394)
T 4fs7_A          147 PEGVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLG  223 (394)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEEC
T ss_pred             CccccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEee
Confidence               0111124566777788888765532  45555554  56777777554 22111112211 2233333322211   


Q ss_pred             ------------------cccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhccc
Q 043930          215 ------------------TGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLN  276 (629)
Q Consensus       215 ------------------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  276 (629)
                                        .......|.++.+|+.+.+..+... .....+.  .+..|+.+.+..+.+.   ...|.++.
T Consensus       224 ~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~--~~~~l~~~~~~~~~i~---~~~F~~~~  297 (394)
T 4fs7_A          224 DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFY--NCSGLKKVIYGSVIVP---EKTFYGCS  297 (394)
T ss_dssp             TTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTT--TCTTCCEEEECSSEEC---TTTTTTCT
T ss_pred             hhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccc--cccccceeccCceeec---cccccccc
Confidence                              1111233444555555555544332 2222222  4556666666555433   23567788


Q ss_pred             CccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930          277 NIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       277 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      +|+.+.+.++ +..+....|.++.+|+.++|.++ ++.+...+|.+|.+|+.+++..| +..+.
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence            8888888765 55555677888999999999654 77777888999999999998766 54443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.04  E-value=7e-10  Score=116.98  Aligned_cols=111  Identities=16%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             CCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccccccc
Q 043930          218 LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADIC  297 (629)
Q Consensus       218 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  297 (629)
                      ....|.++.+|+.+++. +.++......|.  ++.+|+.++|.++ ++.+....|.++.+|+.|.|..+ ++.+....|.
T Consensus       280 ~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~--~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~  354 (394)
T 4gt6_A          280 GTGAFMNCPALQDIEFS-SRITELPESVFA--GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS  354 (394)
T ss_dssp             CTTTTTTCTTCCEEECC-TTCCEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred             cCcccccccccccccCC-CcccccCceeec--CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence            34678889999999996 445523333444  7899999999865 55455678999999999999755 6667778899


Q ss_pred             CCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          298 KLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       298 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      +|.+|+.++|.+|...   .+.+..+..|+.|.+..|.+
T Consensus       355 ~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          355 NCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            9999999999988643   25677888999998877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.95  E-value=8.3e-09  Score=108.05  Aligned_cols=109  Identities=9%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             cccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCC
Q 043930          221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLP  300 (629)
Q Consensus       221 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  300 (629)
                      .|.++.+|+.+.+.++ ++......+.  ++.+|+.+++..+ ++......|.++.+|+.++|.++.++.+....|.+|.
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~--~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQ--NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTT--TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             cccCCccceEEEcCCC-ccEeCccccc--eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            3444555555555443 3312222222  5566666666543 3333345566777777777777776666566677777


Q ss_pred             CCcEEEecCCccCCcchhhhcCCCCCceecccCC
Q 043930          301 HLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGN  334 (629)
Q Consensus       301 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N  334 (629)
                      +|+.++|..+ ++.+...+|.+|.+|+.+.+..+
T Consensus       311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            7777777543 66666667777777777777543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.90  E-value=2.8e-10  Score=106.61  Aligned_cols=120  Identities=11%  Similarity=0.111  Sum_probs=91.0

Q ss_pred             CCccccCCCCCcEEEccCC-ccccc----CCcccccCCCCCCcEEEecCCccccc----chHHhhcccCccceecccccc
Q 043930          218 LPRSIGYMKELQEIILMEN-QLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNML  288 (629)
Q Consensus       218 ~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l  288 (629)
                      +...+....+|++|+|++| .|.+.    +...+.  ...+|++|+|++|.|.+.    +...+....+|++|+|++|.|
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH--hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            3345667789999999999 88643    223333  568899999999999754    344555668899999999999


Q ss_pred             cccc----cccccCCCCCcEEEe--cCCccCCcc----hhhhcCCCCCceecccCCccccc
Q 043930          289 TGFV----SADICKLPHLLNFTF--SNNFFQGMA----MECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       289 ~~~~----~~~l~~l~~L~~L~L--~~N~l~~~~----~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      ++..    ...+....+|++|+|  ++|.|++..    .+.+..+..|++|+|++|.|.+.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            8653    455667789999999  889998754    35566678999999999998754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.78  E-value=2.2e-09  Score=100.40  Aligned_cols=112  Identities=13%  Similarity=0.070  Sum_probs=84.0

Q ss_pred             cccEEEEEcCCC-Ccccc----CchhhhCCcCCCEEECCCCCCCcc----ChhhhcCCCCCcEEEccCCcCCCC----ch
Q 043930           83 ERFVAMIDLNKA-EIAAH----LPPEMGWLLDLIYFHANTNRLCGI----IPETFANMHRLEEFDVSNNRLVGP----FP  149 (629)
Q Consensus        83 ~~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~  149 (629)
                      ...|+.|+|++| .|...    +...+...++|++|+|++|.|.+.    +...+....+|++|+|++|.|.+.    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            456889999999 88654    344556678999999999998753    445566778999999999999754    34


Q ss_pred             hhhhCCCCCcEEEc--cCCcCccCCCchhcc-----CCCCEEEecCcccccc
Q 043930          150 TVALTWKRNLYLDL--RFNNFEGELPPELFQ-----TGLDIIFLNHNWFRGS  194 (629)
Q Consensus       150 ~~l~~l~~L~~L~L--s~n~l~~~ip~~~~~-----~~L~~L~L~~n~l~~~  194 (629)
                      ..+....+|++|+|  ++|.|.+.....+..     .+|++|+|++|.|...
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            55667788999999  889887543333322     7899999999988633

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.72  E-value=8.5e-08  Score=100.29  Aligned_cols=242  Identities=12%  Similarity=0.051  Sum_probs=153.1

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL  163 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  163 (629)
                      .+|+.+.|.. .++.+-..+|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ ++.....+|.. .+|+.++|
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l  120 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF  120 (379)
T ss_dssp             GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred             cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence            4577777754 466666678889999999999754 555556778776 6888877654 43333344544 47999998


Q ss_pred             cCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCc----------------------------
Q 043930          164 RFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNN----------------------------  213 (629)
Q Consensus       164 s~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~----------------------------  213 (629)
                      .++- + .+....|. .+|+.+.+-.+--. .....+.. ..++.+.+..+.                            
T Consensus       121 p~~~-~-~i~~~~F~~~~l~~~~~~~~v~~-i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
T 4h09_A          121 PGAT-T-EIGNYIFYNSSVKRIVIPKSVTT-IKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT  197 (379)
T ss_dssp             CTTC-C-EECTTTTTTCCCCEEEECTTCCE-ECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred             CCcc-c-cccccccccceeeeeeccceeec-cccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence            7653 3 44445544 66777766544211 11111111 122222111110                            


Q ss_pred             -------ccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccc
Q 043930          214 -------FTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDN  286 (629)
Q Consensus       214 -------l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  286 (629)
                             +.......+..+.+|+.+.+..+ +.......+.  .+.+|+.+.+..+ ++......|.++.+|+.+++..+
T Consensus       198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~  273 (379)
T 4h09_A          198 EFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK  273 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC
T ss_pred             ccccccceeEEeecccccccccceeeeccc-eeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhcccccccc
Confidence                   01111233445566777776554 2212223333  6788999999776 55455567888899999999654


Q ss_pred             cccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          287 MLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       287 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                       +..+....|.++.+|+.++|.++.++.+...+|.+|.+|+.++|..+ ++.+
T Consensus       274 -i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I  324 (379)
T 4h09_A          274 -VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI  324 (379)
T ss_dssp             -CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred             -ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE
Confidence             55555667899999999999999999888899999999999999754 4433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.55  E-value=1e-08  Score=100.84  Aligned_cols=122  Identities=13%  Similarity=0.153  Sum_probs=79.2

Q ss_pred             HHHhcCCcccccCC-ccccCCCCCcE--EEccCCcccccCCccc--ccCCCCCCcEEEecCCcccc--cchHHhhcccCc
Q 043930          206 YIVLSSNNFTGCLP-RSIGYMKELQE--IILMENQLSGCLPSEI--GSGEYKNLTVFDIRSNKFHG--SVPQSFANLNNI  278 (629)
Q Consensus       206 ~L~l~~n~l~~~~~-~~l~~l~~L~~--L~Ls~n~l~~~~p~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L  278 (629)
                      .|...+|...+.+. ..|.....|+.  ++++.|.+. .+...+  ...++.+|++|+|++|+|++  .++..+..+.+|
T Consensus       120 ~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L  198 (267)
T 3rw6_A          120 IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL  198 (267)
T ss_dssp             HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTC
T ss_pred             HHHhccchhccccCHHHcCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCC
Confidence            34444444443322 22444455555  667777543 222111  11257889999999999986  345677789999


Q ss_pred             cceecccccccccccccccCCC--CCcEEEecCCccCCcc-------hhhhcCCCCCceec
Q 043930          279 MRLDISDNMLTGFVSADICKLP--HLLNFTFSNNFFQGMA-------MECISGSRDDVYFE  330 (629)
Q Consensus       279 ~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~L~~N~l~~~~-------~~~l~~l~~L~~L~  330 (629)
                      ++|+|++|+|.+.  ..+..+.  +|++|+|++|.+.+..       ...+..+++|+.||
T Consensus       199 ~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          199 KILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            9999999999875  2333333  8999999999987632       24567788888887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.42  E-value=1.6e-07  Score=85.92  Aligned_cols=87  Identities=8%  Similarity=0.061  Sum_probs=61.0

Q ss_pred             CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCC-cccccchHHhhcc----cCccceeccccc-ccccccccccCC
Q 043930          226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSN-KFHGSVPQSFANL----NNIMRLDISDNM-LTGFVSADICKL  299 (629)
Q Consensus       226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l  299 (629)
                      -+|++|||++|.|++..-..+.  .+.+|++|+|++| +|++.....+..+    .+|++|+|++|. |++.....+.++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            4678888888877765555554  6778888888887 4776555556654    368888888874 776666667777


Q ss_pred             CCCcEEEecCCc-cCC
Q 043930          300 PHLLNFTFSNNF-FQG  314 (629)
Q Consensus       300 ~~L~~L~L~~N~-l~~  314 (629)
                      .+|++|+|++|. +++
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            888888888774 444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=1.9e-07  Score=91.76  Aligned_cols=60  Identities=15%  Similarity=0.204  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCCccc--cCchhhhCCcCCCEEECCCCCCCccChhhhcCCC--CCcEEEccCCcCCC
Q 043930           85 FVAMIDLNKAEIAA--HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMH--RLEEFDVSNNRLVG  146 (629)
Q Consensus        85 ~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~  146 (629)
                      +|+.|+|++|+|.+  .++..+..+.+|++|+|++|+|.+.  ..+..+.  +|++|+|++|.+.+
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            45556666666555  2234444555555555555555543  2222222  55555555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.38  E-value=1.6e-07  Score=85.92  Aligned_cols=89  Identities=8%  Similarity=0.046  Sum_probs=76.0

Q ss_pred             CCCCcEEEecCCcccccchHHhhcccCccceeccccc-ccccccccccCC----CCCcEEEecCCc-cCCcchhhhcCCC
Q 043930          251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNM-LTGFVSADICKL----PHLLNFTFSNNF-FQGMAMECISGSR  324 (629)
Q Consensus       251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~L~~N~-l~~~~~~~l~~l~  324 (629)
                      .-+|++|||++|.|++.....+.++.+|++|+|++|. |++.....+..+    .+|++|+|++|. |++.....+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3579999999999998777788899999999999995 887766777775    479999999985 9988888899999


Q ss_pred             CCceecccCCc-cccc
Q 043930          325 DDVYFEEKGNC-LAEM  339 (629)
Q Consensus       325 ~L~~L~l~~N~-l~~~  339 (629)
                      +|++|+|+++. |++.
T Consensus       140 ~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             TCCEEEEESCTTCCCH
T ss_pred             CCCEEECCCCCCCCch
Confidence            99999999874 6653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.31  E-value=3.4e-07  Score=85.31  Aligned_cols=116  Identities=13%  Similarity=0.117  Sum_probs=83.5

Q ss_pred             cccCCCCCcEEEccCC-ccccc----CCcccccCCCCCCcEEEecCCccccc----chHHhhcccCccceeccccccccc
Q 043930          221 SIGYMKELQEIILMEN-QLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNMLTGF  291 (629)
Q Consensus       221 ~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~  291 (629)
                      .+.+...|++|+|++| +|.+.    +.+.+.  ....|++|+|++|+|.+.    +.+.+.....|++|+|++|.|++.
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~--~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHh--hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            4455578999999885 77543    333444  567899999999999753    445556678899999999999865


Q ss_pred             cc----ccccCCCCCcEEEecCC---ccCCc----chhhhcCCCCCceecccCCcccc
Q 043930          292 VS----ADICKLPHLLNFTFSNN---FFQGM----AMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       292 ~~----~~l~~l~~L~~L~L~~N---~l~~~----~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      ..    +.+.....|++|+|++|   .|.+.    +.+.+.....|++|+++.|++..
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~  171 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA  171 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence            33    34556678999999865   44443    34566777899999998887653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.28  E-value=3.4e-07  Score=85.24  Aligned_cols=87  Identities=17%  Similarity=0.123  Sum_probs=50.1

Q ss_pred             hhhCCcCCCEEECCCC-CCCcc----ChhhhcCCCCCcEEEccCCcCCCC----chhhhhCCCCCcEEEccCCcCccCCC
Q 043930          103 EMGWLLDLIYFHANTN-RLCGI----IPETFANMHRLEEFDVSNNRLVGP----FPTVALTWKRNLYLDLRFNNFEGELP  173 (629)
Q Consensus       103 ~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~ip  173 (629)
                      .+.+-..|++|+|++| +|...    +.+.+...+.|++|+|++|.|.+.    +.+.+...+.|++|+|++|.|.+...
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3344566777777764 55432    445556666777777777776532    33444456667777777777664333


Q ss_pred             chhcc-----CCCCEEEecCc
Q 043930          174 PELFQ-----TGLDIIFLNHN  189 (629)
Q Consensus       174 ~~~~~-----~~L~~L~L~~n  189 (629)
                      ..+..     ..|++|+|++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence            32222     45666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.78  E-value=0.0015  Score=56.48  Aligned_cols=56  Identities=14%  Similarity=0.161  Sum_probs=31.4

Q ss_pred             EEEccCCccc-ccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccc
Q 043930          230 EIILMENQLS-GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLT  289 (629)
Q Consensus       230 ~L~Ls~n~l~-~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  289 (629)
                      +++.++++++ ..++..+.    .+|++|+|++|+|+..-...|..+.+|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666654 24444332    35666666666666444455556666666666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.51  E-value=0.0024  Score=55.19  Aligned_cols=57  Identities=23%  Similarity=0.326  Sum_probs=39.6

Q ss_pred             cEEEecCCccc-ccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccC
Q 043930          255 TVFDIRSNKFH-GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ  313 (629)
Q Consensus       255 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  313 (629)
                      .+++.++++|+ ..++..|.  .+|++|+|++|+|+.+....|..+.+|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777776 23443221  35788888888888766666777888888888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	629
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.5 bits (205), Expect = 8e-18
 Identities = 45/207 (21%), Positives = 67/207 (32%), Gaps = 16/207 (7%)

Query: 104 MGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL 163
           +  L +L    A  N++  I P     +  L+E  ++ N+L       +LT   +L L  
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLTDLDLA- 249

Query: 164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIG 223
             NN    L P    T L  + L  N      P      L     L  N         I 
Sbjct: 250 --NNQISNLAPLSGLTKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISPIS 304

Query: 224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDI 283
            +K L  + L  N +S   P          L      +NK       S ANL NI  L  
Sbjct: 305 NLKNLTYLTLYFNNISDISPV----SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 284 SDNMLTGFVSADICKLPHLLNFTFSNN 310
             N ++      +  L  +     ++ 
Sbjct: 359 GHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 4e-15
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 36/186 (19%)

Query: 101 PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLY 160
              +  L +L       N++  + P   + + +L E  +  N++    P   LT   NL 
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 161 LDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPR 220
                                    LN N      P +  ++L  Y+ L  NN +   P 
Sbjct: 292 -------------------------LNENQLEDISPISNLKNL-TYLTLYFNNISDISP- 324

Query: 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMR 280
            +  + +LQ +    N++S    S + +    N+       N+     P   ANL  I +
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLAN--LTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 281 LDISDN 286
           L ++D 
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 4e-12
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 14/187 (7%)

Query: 128 FANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLN 187
            A +  LE    +NN++    P           L L  N  +  +      T L  + L 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLA 249

Query: 188 HNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIG 247
           +N      P +    L   + L +N  +   P +        E+   + +    +     
Sbjct: 250 NNQISNLAPLSGLTKL-TELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---- 304

Query: 248 SGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTF 307
               KNLT   +  N      P   ++L  + RL  ++N ++   S  +  L ++   + 
Sbjct: 305 --NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSA 358

Query: 308 SNNFFQG 314
            +N    
Sbjct: 359 GHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 4e-05
 Identities = 37/277 (13%), Positives = 77/277 (27%), Gaps = 49/277 (17%)

Query: 76  DVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLE 135
            +F D          L K  +   +      L  +    A+   +  I  +    ++ L 
Sbjct: 14  QIFTDTALAEKMKTVLGKTNVTDTVSQTD--LDQVTTLQADRLGIKSI--DGVEYLNNLT 69

Query: 136 EFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELP---------------------- 173
           + + SNN+L    P   LT   ++ ++         L                       
Sbjct: 70  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 174 ---------------PELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCL 218
                           ++            ++           +L     L  ++     
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 219 PRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNI 278
              +  +  L+ +I   NQ+S   P  I      NL    +  N+       + A+L N+
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGI----LTNLDELSLNGNQLKD--IGTLASLTNL 243

Query: 279 MRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315
             LD+++N ++      +  L  L       N    +
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 278

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 69/297 (23%), Positives = 109/297 (36%), Gaps = 32/297 (10%)

Query: 44  LQAFKKAIYSDPYNHTENWVGTDVCQYN--GVLCDVFIDNQERFVAMIDL--NKAEIAAH 99
           L   KK +  +P   +     TD C     GVLCD   D Q   V  +DL          
Sbjct: 11  LLQIKKDL-GNPTTLSSWLPTTDCCNRTWLGVLCDT--DTQTYRVNNLDLSGLNLPKPYP 67

Query: 100 LPPEMGWLLDLIYFH-ANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRN 158
           +P  +  L  L + +    N L G IP   A + +L    +++  + G  P      K  
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 159 LYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFT 215
           + LD  +N   G LPP +     L  I  + N   G+IP++ G    L   + +S N  T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 216 GCLPRSIGYMKELQE--------------------IILMENQLSGCLPSEIGSGEYKNLT 255
           G +P +   +                            +    +         G  KNL 
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247

Query: 256 VFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFF 312
             D+R+N+ +G++PQ    L  +  L++S N L G +      L       ++NN  
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 4/172 (2%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEE-FDVSNNRLVGPFPTVALTWKR 157
            LPP +  L +L+    + NR+ G IP+++ +  +L     +S NRL G  P        
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

Query: 158 NLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGC 217
                 R                   I L  N     + +         + L +N   G 
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259

Query: 218 LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP 269
           LP+ +  +K L  + +  N L G +P     G  +   V    +NK     P
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 4e-14
 Identities = 47/257 (18%), Positives = 83/257 (32%), Gaps = 33/257 (12%)

Query: 68  CQYNGVLCD-----VFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCG 122
           C    V C          +     A++DL   +I      +   L +L       N++  
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 123 IIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLD 182
           I P  FA + +LE   +S N+L    P       + L       N   ++   +F     
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELR---VHENEITKVRKSVFNGLNQ 125

Query: 183 IIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL 242
           +I +                            +G    +   MK+L  I + +  +    
Sbjct: 126 MIVVELGTNP-------------------LKSSGIENGAFQGMKKLSYIRIADTNI---- 162

Query: 243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302
            + I  G   +LT   +  NK       S   LNN+ +L +S N ++   +  +   PHL
Sbjct: 163 -TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 221

Query: 303 LNFTFSNNFFQGMAMEC 319
                +NN    +    
Sbjct: 222 RELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 8/132 (6%)

Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264
           R +  S       +P+ +    +   + L  N+++     +  +   KNL    + +NK 
Sbjct: 13  RVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKI 67

Query: 265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSR 324
               P +FA L  + RL +S N L          L  L       N    +     +G  
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLN 124

Query: 325 DDVYFEEKGNCL 336
             +  E   N L
Sbjct: 125 QMIVVELGTNPL 136

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 5/209 (2%)

Query: 109 DLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNF 168
                  + NR+  +   +F     L    + +N L                LDL  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 169 EGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLA-RYIVLSSNNFTGCLPRSIGYM 225
              + P  F     L  + L+    +   P       A +Y+ L  N        +   +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD 285
             L  + L  N++S             +L    +  N+     P +F +L  +M L +  
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRG--LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 286 NMLTGFVSADICKLPHLLNFTFSNNFFQG 314
           N L+   +  +  L  L     ++N +  
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVC 239

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 7e-09
 Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 10/181 (5%)

Query: 89  IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF 148
           + L++  +    P     L  L Y +   N L  +  +TF ++  L    +  NR+    
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-V 168

Query: 149 PTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLA---R 205
           P  A     +L   L   N    + P  F+    ++ L       S   T   +     +
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
           Y+ L+ N +  C  R+      LQ+     +++   LP  +         +  + +N   
Sbjct: 229 YLRLNDNPWV-CDCRARPLWAWLQKFRGSSSEVPCSLPQRL-----AGRDLKRLAANDLQ 282

Query: 266 G 266
           G
Sbjct: 283 G 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 88  MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP 147
            + L+   I++        L  L     + NR+  + P  F ++ RL    +  N L   
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 148 FPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETI-GESLARY 206
                   +   YL L  N +  +         L     + +    S+P+ + G  L R 
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR- 275

Query: 207 IVLSSNNFTGC 217
             L++N+  GC
Sbjct: 276 --LAANDLQGC 284

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 21/136 (15%), Positives = 51/136 (37%), Gaps = 8/136 (5%)

Query: 155 WKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNF 214
           W+    LDL   N   ++   L   G+       ++    + E       +++ LS++  
Sbjct: 2   WQT---LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 215 TG-CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR--SNKFHGSVPQS 271
               L   +    +LQ + L   +LS  + + +   +  NL   ++   S     ++   
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 272 FANLNNIMRLDISDNM 287
            ++ + +  L++S   
Sbjct: 117 LSSCSRLDELNLSWCF 132

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 5e-05
 Identities = 41/274 (14%), Positives = 81/274 (29%), Gaps = 44/274 (16%)

Query: 89  IDLNKAEIAAHLPPEMGWLLD--LIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG 146
           +DL    +    P   G LL   +I F    + +   + E F+   R++  D+SN+ +  
Sbjct: 5   LDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60

Query: 147 PFPTVALTWKRNL-YLDLRFNNFEGELPPELFQ-TGLDIIFLNHNW-FRGSIPETIGESL 203
                 L+    L  L L        +   L + + L  + L+    F     +T+  S 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 204 ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGS--------------- 248
           +R   L+ +       + +          + +  LSG   +   S               
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 249 ----------------GEYKNLTVFDI-RSNKFHGSVPQSFANLNNIMRLDISDNMLTGF 291
                            +   L    + R              +  +  L +   +  G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 292 VSADICKLPHLLNFTFSNNFFQGMAMECISGSRD 325
           +      LPHL     + + F  +A   I   ++
Sbjct: 241 LQLLKEALPHL---QINCSHFTTIARPTIGNKKN 271

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 33/234 (14%), Positives = 68/234 (29%), Gaps = 18/234 (7%)

Query: 76  DVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLE 135
            +F D        I   K+ +   +      L  +    A    +  I  E    ++ L 
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVTQAD--LDGITTLSAFGTGVTTI--EGVQYLNNLI 66

Query: 136 EFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSI 195
             ++ +N++    P   LT    L L          +        LD+            
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 196 PETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLT 255
             +  + L   +   +N        ++ Y+      +     L+              LT
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL----------SKLT 176

Query: 256 VFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSN 309
                 NK     P   A+L N++ + + +N ++      +    +L   T +N
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 25/121 (20%)

Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPS-------------------E 245
           R + L+  + T      +  +  +  + L  N+L    P+                    
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 246 IGSGEYKNLTVFDIRSNKF-HGSVPQSFANLNNIMRLDISDNMLT---GFVSADICKLPH 301
            G      L    + +N+    +  Q   +   ++ L++  N L    G        LP 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 302 L 302
           +
Sbjct: 119 V 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 124 IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDI 183
           +      +  +   D+S+NRL    P  AL   R L +    +N    +        L  
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALENVDGVANLPRLQE 69

Query: 184 IFLNHNWFRGSIPETIGESLA--RYIVLSSNNFTGCLPRSIGYMKEL 228
           + L +N  + S       S      + L  N+           + E+
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 26/189 (13%), Positives = 55/189 (29%), Gaps = 8/189 (4%)

Query: 99  HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRN 158
            LPP++     +++   N   L      T     RL + ++    L        L     
Sbjct: 24  ALPPDLPKDTTILHLSEN--LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 159 LYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCL 218
           L L                   L ++ ++ N         +        +    N    L
Sbjct: 82  LDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 219 PRSIGYMKELQEIILME-NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN 277
           P  +       E + +  N L+      +     +NL    ++ N  + ++P+ F   + 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNG--LENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 278 IMRLDISDN 286
           +    +  N
Sbjct: 197 LPFAFLHGN 205

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 10/102 (9%), Positives = 28/102 (27%), Gaps = 10/102 (9%)

Query: 227 ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG----SVPQSFANLNNIMRLD 282
           ++Q + +   +LS    +E+     +   V  +            +  +      +  L+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPL-LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 283 ISDNMLTGFVSADICKL-----PHLLNFTFSNNFFQGMAMEC 319
           +  N L       + +        +   +  N    G     
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 14/175 (8%), Positives = 41/175 (23%), Gaps = 17/175 (9%)

Query: 52  YSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEM--GWLLD 109
                 +     G  +     +     +++                + +  +      L 
Sbjct: 287 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 346

Query: 110 LIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL----VGPFPTVALTWKRNL-YLDLR 164
           +         +  +          L    +++  +            L    +L  LDL 
Sbjct: 347 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLS 405

Query: 165 FNNFEGELPPELFQ------TGLDIIFLNHNWFRGSIPETIGESLARY---IVLS 210
            N        +L +        L+ + L   ++   + + +           V+S
Sbjct: 406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 205 RYIVLSSNNFTG----CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN---LTVF 257
           R + L+  + +      L  ++     L+E+ L  N L      ++     +    L   
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 258 DIRSNKFHGSVPQSFANL 275
            +    +   +      L
Sbjct: 432 VLYDIYWSEEMEDRLQAL 449

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 10/90 (11%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 224 YMKELQEIILMENQLSG----CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA-----N 274
               L+E+ L +  LS      +       E   L    ++ N+      ++        
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 275 LNNIMRLDISDNMLTGFVSADICKLPHLLN 304
           + +++ L+++ N  +      + ++  + +
Sbjct: 301 MPDLLFLELNGNRFSEE-DDVVDEIREVFS 329

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 11/97 (11%)

Query: 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
             +   N  +  +         L+E+ +  N+L   LP+         L       N   
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP-----RLERLIASFNHL- 316

Query: 266 GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302
             VP+   NL    +L +  N L  F       +  L
Sbjct: 317 AEVPELPQNLK---QLHVEYNPLREFPDI-PESVEDL 349

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 18/150 (12%), Positives = 48/150 (32%), Gaps = 3/150 (2%)

Query: 51  IYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDL 110
                +    + V  ++ +      +         +  + L + +I          L  L
Sbjct: 45  SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL 104

Query: 111 IYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEG 170
              +   N++  ++P +F +++ L   ++++N             +      L       
Sbjct: 105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARC 163

Query: 171 ELPPELFQTGLDIIFLNHNWFRGSIPETIG 200
             P ++    + I  L H+ F+ S   + G
Sbjct: 164 GAPSKV--RDVQIKDLPHSEFKCSSENSEG 191

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 25/203 (12%), Positives = 64/203 (31%), Gaps = 16/203 (7%)

Query: 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN 166
             + I  +     +   + +    ++ +++   +N+ +        L     L+L+   N
Sbjct: 23  FAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN--GN 78

Query: 167 NFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMK 226
                 P       L  +             +  + L +   LS  +        + ++ 
Sbjct: 79  KLTDIKPLA----NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 227 ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDN 286
           +L+ + L  N+++              L    +  N+    VP   A L  +  L +S N
Sbjct: 135 QLESLYLGNNKITDITVLSR----LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188

Query: 287 MLTGFVSADICKLPHLLNFTFSN 309
            ++   +  +  L +L      +
Sbjct: 189 HISDLRA--LAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	629
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.93

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.8e-35  Score=301.85  Aligned_cols=291  Identities=23%  Similarity=0.321  Sum_probs=255.8

Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCCCCC-CCCCCC--cCceecCCCCCCCcccEEEEEcCCCCccc--cCchhhhCCcCCC
Q 043930           37 MKMAYVGLQAFKKAIYSDPYNHTENWV-GTDVCQ--YNGVLCDVFIDNQERFVAMIDLNKAEIAA--HLPPEMGWLLDLI  111 (629)
Q Consensus        37 l~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~c~--~~g~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~l~~L~  111 (629)
                      ..++..||++||+.+..+  ..+.+|. +.|+|.  |.||.|+..  +...+|+.|||+++++.+  .++.+|++|++|+
T Consensus         4 ~~~e~~aLl~~k~~~~~~--~~l~sW~~~~d~C~~~w~gv~C~~~--~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~   79 (313)
T d1ogqa_           4 NPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTD--TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CHHHHHHHHHHHHHTTCC--GGGTTCCTTSCTTTTCSTTEEECCS--SSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CHHHHHHHHHHHHHCCCC--CcCCCCCCCCCCCCCcCCCeEEeCC--CCcEEEEEEECCCCCCCCCCCCChHHhcCcccc
Confidence            345678999999997543  3578885 678884  999999853  234579999999999987  4789999999999


Q ss_pred             EEECCC-CCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCc
Q 043930          112 YFHANT-NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHN  189 (629)
Q Consensus       112 ~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n  189 (629)
                      +|+|++ |++.|.++..|++|.+|++|+|++|+|.+.....+..+.+|++|++++|++.+.++..+.. .+|+++++++|
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccc
Confidence            999987 8999999999999999999999999999988888999999999999999999888888877 89999999999


Q ss_pred             cccccCchhhhhh-h-hHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc
Q 043930          190 WFRGSIPETIGES-L-ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS  267 (629)
Q Consensus       190 ~l~~~~~~~~~~~-~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~  267 (629)
                      .+.+.++..++.. . ++.+++++|++++..+..+.++.. .+++++++.+.+.++..+.  .+.+|++|++++|.+.+.
T Consensus       160 ~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~--~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCC--TTSCCSEEECCSSEECCB
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--cccccccccccccccccc
Confidence            9999998887663 3 578899999999998888888755 4799999999999888887  789999999999999876


Q ss_pred             chHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          268 VPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       268 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      ++ .+..+.+|++|+|++|+|++.++..|+++++|++|+|++|+|+|.+++ +.++.+|+.+++.+|.+
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            54 688899999999999999999999999999999999999999987774 57789999999999963

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=3.4e-28  Score=247.42  Aligned_cols=229  Identities=24%  Similarity=0.363  Sum_probs=209.9

Q ss_pred             CcccEEEEEcCC-CCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcE
Q 043930           82 QERFVAMIDLNK-AEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLY  160 (629)
Q Consensus        82 ~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  160 (629)
                      .+.+|++|||++ |++.|.++.+|++|++|++|+|++|+|.+.....+..+.+|++|++++|.+.+.++..+.++.+|++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            578899999987 8899999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             EEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930          161 LDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL  238 (629)
Q Consensus       161 L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  238 (629)
                      |++++|++.+.++..++.  ..++.+++++|++++..+..+....+.++++.++.+.+.++..+..+.+|++|++++|.+
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999988877  446999999999999998888887777899999999999999999999999999999999


Q ss_pred             cccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCc-cCC
Q 043930          239 SGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF-FQG  314 (629)
Q Consensus       239 ~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~  314 (629)
                      .+.++ .+.  .+.+|++|+|++|+|+|.++.+|+++++|++|+|++|+|+|.++. +.++.+|+.|+|++|+ +.|
T Consensus       234 ~~~~~-~~~--~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         234 AFDLG-KVG--LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCBGG-GCC--CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             ccccc-ccc--cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence            87665 454  689999999999999999999999999999999999999988874 6788999999999997 444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.2e-25  Score=224.39  Aligned_cols=271  Identities=19%  Similarity=0.226  Sum_probs=210.3

Q ss_pred             CCcCceecCCCCC-----CCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCC
Q 043930           68 CQYNGVLCDVFID-----NQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN  142 (629)
Q Consensus        68 c~~~g~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  142 (629)
                      |.+.++.|....-     +....|++|+|++|+|+.+...+|.++.+|++|++++|.+....+..|.++.+|++|+|++|
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            5667777764311     12467899999999998776678999999999999999999877888999999999999999


Q ss_pred             cCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCcccccc--Cchhhhh-hhhHHHHhcCCccccc
Q 043930          143 RLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGS--IPETIGE-SLARYIVLSSNNFTGC  217 (629)
Q Consensus       143 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~--~~~~~~~-~~L~~L~l~~n~l~~~  217 (629)
                      +|+. ++.  .....|+.|++.+|.+. .+....+.  ..++.+++..|.....  ....+.. .+|+++++++|++.. 
T Consensus        90 ~l~~-l~~--~~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-  164 (305)
T d1xkua_          90 QLKE-LPE--KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  164 (305)
T ss_dssp             CCSB-CCS--SCCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             ccCc-Ccc--chhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-
Confidence            9886 332  23467899999999988 55555554  6677888887754422  2223332 468888999998874 


Q ss_pred             CCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccccccc
Q 043930          218 LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADIC  297 (629)
Q Consensus       218 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  297 (629)
                      ++..  .+.+|++|++++|.+.+.....+.  .+..+++|++++|.+++....+|.++.+|++|+|++|+|+. ++..|.
T Consensus       165 l~~~--~~~~L~~L~l~~n~~~~~~~~~~~--~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~  239 (305)
T d1xkua_         165 IPQG--LPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLA  239 (305)
T ss_dssp             CCSS--CCTTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTT
T ss_pred             cCcc--cCCccCEEECCCCcCCCCChhHhh--ccccccccccccccccccccccccccccceeeecccccccc-cccccc
Confidence            3332  357899999999999877777776  78999999999999998778889999999999999999986 467888


Q ss_pred             CCCCCcEEEecCCccCCcchhhh------cCCCCCceecccCCccccccccCCCCCC
Q 043930          298 KLPHLLNFTFSNNFFQGMAMECI------SGSRDDVYFEEKGNCLAEMEYQKLPTEC  348 (629)
Q Consensus       298 ~l~~L~~L~L~~N~l~~~~~~~l------~~l~~L~~L~l~~N~l~~~~~~~~~~~c  348 (629)
                      ++.+|++|+|++|+|+.+..+.|      ..+..|+.|+|++|.+.....+.....|
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~  296 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  296 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcc
Confidence            99999999999999988755444      3567899999999998765554444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.9e-24  Score=213.59  Aligned_cols=246  Identities=17%  Similarity=0.236  Sum_probs=204.6

Q ss_pred             EEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccC
Q 043930           86 VAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRF  165 (629)
Q Consensus        86 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  165 (629)
                      ++.+|.++++++. +|..|.  ++|++|+|++|+|+.....+|.++.+|++|++++|.+....+..|.++.+|++|+|++
T Consensus        12 ~~~~~C~~~~L~~-lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCc-cCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            5668999988864 566553  6899999999999976667899999999999999999987788899999999999999


Q ss_pred             CcCccCCCchhccCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcc--cccCCccccCCCCCcEEEccCCcccccC
Q 043930          166 NNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNF--TGCLPRSIGYMKELQEIILMENQLSGCL  242 (629)
Q Consensus       166 n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  242 (629)
                      |+|+ .++..++ ..|+.|++.+|.+.+.....+.. ..+..+++..|..  .......|..+++|+++++++|.+. .+
T Consensus        89 n~l~-~l~~~~~-~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l  165 (305)
T d1xkua_          89 NQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI  165 (305)
T ss_dssp             SCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred             CccC-cCccchh-hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-cc
Confidence            9998 6765433 68999999999998654433332 3445566666543  3345567888999999999999987 44


Q ss_pred             CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcC
Q 043930          243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG  322 (629)
Q Consensus       243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  322 (629)
                      +..    .+.+|++|++++|.+++.....|.++..+++|++++|.|.++....|.++.+|++|+|++|+|+.+ +..|.+
T Consensus       166 ~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~  240 (305)
T d1xkua_         166 PQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLAD  240 (305)
T ss_dssp             CSS----CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTT
T ss_pred             Ccc----cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-cccccc
Confidence            443    357999999999999988888999999999999999999998888899999999999999999876 567899


Q ss_pred             CCCCceecccCCcccccccc
Q 043930          323 SRDDVYFEEKGNCLAEMEYQ  342 (629)
Q Consensus       323 l~~L~~L~l~~N~l~~~~~~  342 (629)
                      +++|++|+|++|.|+.+...
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~  260 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSN  260 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTT
T ss_pred             ccCCCEEECCCCccCccChh
Confidence            99999999999999977543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.9e-24  Score=212.68  Aligned_cols=204  Identities=16%  Similarity=0.199  Sum_probs=105.9

Q ss_pred             cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccC-CcCccCCCchhcc--CCCCEE
Q 043930          108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRF-NNFEGELPPELFQ--TGLDII  184 (629)
Q Consensus       108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~ip~~~~~--~~L~~L  184 (629)
                      ..+++|+|++|+|+++...+|.++.+|++|++++|.|.......+..+..+++|++.. |.++ .+....+.  .+|++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc-cccchhhcccccCCEE
Confidence            3455666666666544444555666666666666665554445555555555555443 2333 33333322  455555


Q ss_pred             EecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc
Q 043930          185 FLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK  263 (629)
Q Consensus       185 ~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~  263 (629)
                      +|++|.+.+.....+.. .+|+.+++++|+|++.....|..+.+|++|+|++|+|++.....+.  ++.+|++|+|++|+
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~--~l~~L~~l~l~~N~  188 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNR  188 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc--cccccchhhhhhcc
Confidence            55555554322222221 2334444444444433334455555566666666665543333443  45566666666666


Q ss_pred             ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930          264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      +++..+..|.++.+|++||+++|+|.++....|.++.+|++|+|++|.+..
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            655555555555666666666666655555555555666666666665543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=2.4e-23  Score=216.96  Aligned_cols=239  Identities=18%  Similarity=0.246  Sum_probs=150.7

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCC----------------
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP----------------  147 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------  147 (629)
                      .+|++|||++|+|++..  .|+++.+|++|+|++|+|.+.  ..++++.+|++|++++|.+++.                
T Consensus        66 ~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i--~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (384)
T d2omza2          66 NNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS  141 (384)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEE
T ss_pred             CCCCEEeCcCCcCCCCc--cccCCcccccccccccccccc--cccccccccccccccccccccccccccccccccccccc
Confidence            44666666666665532  356666666666666666543  2355666666666665544321                


Q ss_pred             -----------------------------------------------chhhhhCCCCCcEEEccCCcCccCCCchhccCC
Q 043930          148 -----------------------------------------------FPTVALTWKRNLYLDLRFNNFEGELPPELFQTG  180 (629)
Q Consensus       148 -----------------------------------------------~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~  180 (629)
                                                                     ....+..+.++++|++++|.++ .+.......+
T Consensus       142 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~-~~~~~~~~~~  220 (384)
T d2omza2         142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS-DITPLGILTN  220 (384)
T ss_dssp             EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CCGGGGGCTT
T ss_pred             ccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccC-CCCcccccCC
Confidence                                                           0123345567788888888877 3433333477


Q ss_pred             CCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEec
Q 043930          181 LDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR  260 (629)
Q Consensus       181 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls  260 (629)
                      |++|++++|.+++ +.......+|+.|++++|.+++..  .++.+.+|++|++++|++.+.. . +.  .+..++.++++
T Consensus       221 L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~-~-~~--~~~~l~~l~~~  293 (384)
T d2omza2         221 LDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS-P-LA--GLTALTNLELN  293 (384)
T ss_dssp             CCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG-G-GT--TCTTCSEEECC
T ss_pred             CCEEECCCCCCCC-cchhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC-c-cc--ccccccccccc
Confidence            8888888888774 332223356778888888877543  3677788888888888876332 1 22  46677777777


Q ss_pred             CCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930          261 SNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       261 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      +|.+++.  ..+..+.+|++|+|++|+|.++.  .+..+.+|++|+|++|+|+++.  .|.++++|++|++++|.|++..
T Consensus       294 ~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         294 ENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             SSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCG
T ss_pred             ccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCCh
Confidence            7777642  23666777777777777777642  3666777777777777776643  4666777777777777776543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.8e-24  Score=211.79  Aligned_cols=247  Identities=19%  Similarity=0.205  Sum_probs=199.0

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEcc-CCcCCCCchhhhhCCCCCcEE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVS-NNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      ...+++|+|++|+|+.+-..+|.++++|++|++++|++.++....+.++..+++|++. .|.+.......|.++++|++|
T Consensus        31 p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            3468999999999988777889999999999999999998888889999999999876 556777667789999999999


Q ss_pred             EccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930          162 DLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL  238 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  238 (629)
                      +|++|.+. .+....+.  .+|+.|++++|.|++.....+.. .+|++|++++|++.+.....|.++++|++|++++|++
T Consensus       111 ~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence            99999997 44444443  88999999999999766666654 5799999999999988888999999999999999999


Q ss_pred             cccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchh
Q 043930          239 SGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAME  318 (629)
Q Consensus       239 ~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  318 (629)
                      ++..+..|.  .+.+|++||+++|++.+.....|.++.+|++|+|++|.+...... ..-...|+++.+..+++....+.
T Consensus       190 ~~i~~~~f~--~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         190 AHVHPHAFR--DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             CEECTTTTT--TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESG
T ss_pred             cccChhHhh--hhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCch
Confidence            988888887  899999999999999988889999999999999999998753221 11112344555555666655555


Q ss_pred             hhcCCCCCceecccCCcc
Q 043930          319 CISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       319 ~l~~l~~L~~L~l~~N~l  336 (629)
                      .+.+   +..+++..+.|
T Consensus       267 ~l~g---~~l~~l~~~~l  281 (284)
T d1ozna_         267 RLAG---RDLKRLAANDL  281 (284)
T ss_dssp             GGTT---CBGGGSCGGGS
T ss_pred             HHcC---CccccCCHHHC
Confidence            4443   33344444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.7e-23  Score=204.67  Aligned_cols=199  Identities=20%  Similarity=0.209  Sum_probs=150.9

Q ss_pred             ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930           84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL  163 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  163 (629)
                      ..+.++|+++++|+. +|..|.  ++|++|+|++|+|++.....|.++.+|++|+|++|+|+. +. .+..+.+|++|+|
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            345556888888875 565553  578999999999987767788999999999999998875 32 3567888999999


Q ss_pred             cCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930          164 RFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL  242 (629)
Q Consensus       164 s~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  242 (629)
                      ++|+++ .+...+.. .+|++|++++|.+.+                       .....+..+.+|++|++++|.+++..
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~-----------------------~~~~~~~~l~~l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-----------------------LPLGALRGLGELQELYLKGNELKTLP  140 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCC-----------------------CCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             cccccc-ccccccccccccccccccccccce-----------------------eeccccccccccccccccccccceec
Confidence            998887 34443333 677777777766552                       23345667788899999999888443


Q ss_pred             CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930          243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      ...+.  .+.+|++|++++|+|++.....|..+.+|++|+|++|+|+ .+++.+..+.+|+.|+|++|.+..
T Consensus       141 ~~~~~--~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         141 PGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTT--TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccc--ccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            34444  6788999999999988777777888889999999999888 467777788889999999888753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=3.6e-22  Score=207.89  Aligned_cols=240  Identities=18%  Similarity=0.210  Sum_probs=196.2

Q ss_pred             CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      .+.+|+.|++++++|...  +.|.+|++|++|+|++|+|++..  .|+++.+|++|+|++|.|.+..  .+..+.+|++|
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccc
Confidence            346799999999999764  56889999999999999999653  4999999999999999998743  48899999999


Q ss_pred             EccCCcCccCCC---------------------------------------------------------------chhcc
Q 043930          162 DLRFNNFEGELP---------------------------------------------------------------PELFQ  178 (629)
Q Consensus       162 ~Ls~n~l~~~ip---------------------------------------------------------------~~~~~  178 (629)
                      ++++|.+++...                                                               .....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
T d2omza2         116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK  195 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            999887753100                                                               00111


Q ss_pred             -CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEE
Q 043930          179 -TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVF  257 (629)
Q Consensus       179 -~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L  257 (629)
                       .+++.|++++|.+++..+ .....+|++|++++|.+++.  ..+..+.+|++|++++|.+++..  .+.  .+.+|++|
T Consensus       196 l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~--~~~~L~~L  268 (384)
T d2omza2         196 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLS--GLTKLTEL  268 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGT--TCTTCSEE
T ss_pred             ccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--ccc--ccccCCEe
Confidence             678899999999886543 33346799999999999853  46788999999999999998543  244  68999999


Q ss_pred             EecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930          258 DIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       258 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      ++++|++++..  .+.++..++.+++++|.+.+.  ..+..+.+|+.|+|++|+|.++.  .+..+++|++|++++|.|+
T Consensus       269 ~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         269 KLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             eccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence            99999998543  477889999999999999874  45888999999999999999874  4888999999999999998


Q ss_pred             ccc
Q 043930          338 EME  340 (629)
Q Consensus       338 ~~~  340 (629)
                      +..
T Consensus       343 ~l~  345 (384)
T d2omza2         343 DVS  345 (384)
T ss_dssp             CCG
T ss_pred             CCh
Confidence            764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5e-22  Score=196.46  Aligned_cols=203  Identities=16%  Similarity=0.145  Sum_probs=160.8

Q ss_pred             hCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEE
Q 043930          105 GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDII  184 (629)
Q Consensus       105 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L  184 (629)
                      .+...+.+++.++++++. ++..|.  .+|++|+|++|+|++.....|.++.+|++|+|++|+|+ .++...+..+|++|
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~~~l~~L~~L   82 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTL   82 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEE
T ss_pred             cccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccccccccccccc
Confidence            455667778898888884 555443  57899999999998866677888999999999999987 55544444788888


Q ss_pred             EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcc
Q 043930          185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF  264 (629)
Q Consensus       185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l  264 (629)
                      +|++|++++                        +...+.++.+|++|++++|.+.+.....+.  .+.+|++|++++|.+
T Consensus        83 ~Ls~N~l~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~l~~L~l~~n~l  136 (266)
T d1p9ag_          83 DLSHNQLQS------------------------LPLLGQTLPALTVLDVSFNRLTSLPLGALR--GLGELQELYLKGNEL  136 (266)
T ss_dssp             ECCSSCCSS------------------------CCCCTTTCTTCCEEECCSSCCCCCCSSTTT--TCTTCCEEECTTSCC
T ss_pred             ccccccccc------------------------cccccccccccccccccccccceeeccccc--ccccccccccccccc
Confidence            888887762                        234567788999999999988855554554  788899999999999


Q ss_pred             cccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930          265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       265 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      ++.....+..+.+|++|++++|+|+++....|..+.+|++|+|++|+|+.+ ++.+..+.+|++|+|++|.+.+
T Consensus       137 ~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred             ceeccccccccccchhcccccccccccCccccccccccceeecccCCCccc-ChhHCCCCCCCEEEecCCCCCC
Confidence            877777788889999999999999987777788899999999999999854 5556678899999999998764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=5.3e-20  Score=177.18  Aligned_cols=201  Identities=15%  Similarity=0.201  Sum_probs=93.4

Q ss_pred             EcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCc
Q 043930           90 DLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFE  169 (629)
Q Consensus        90 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  169 (629)
                      +++.+++.+.+  .+..|.+|++|++.+|+|+..  ..|.+|++|++|+|++|.|.+..  .+..+.+|++|++++|.++
T Consensus        25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc
Confidence            34444444432  234445555555555555532  23555556666666665555422  2555555666666555554


Q ss_pred             cCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccC
Q 043930          170 GELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSG  249 (629)
Q Consensus       170 ~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~  249 (629)
                       .+.......+|++|+++++.+.+.                         ..+..+..++.++++++.+.+..  .+.  
T Consensus        99 -~i~~l~~l~~L~~l~l~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~~--~~~--  148 (227)
T d1h6ua2          99 -NVSAIAGLQSIKTLDLTSTQITDV-------------------------TPLAGLSNLQVLYLDLNQITNIS--PLA--  148 (227)
T ss_dssp             -CCGGGTTCTTCCEEECTTSCCCCC-------------------------GGGTTCTTCCEEECCSSCCCCCG--GGG--
T ss_pred             -cccccccccccccccccccccccc-------------------------chhccccchhhhhchhhhhchhh--hhc--
Confidence             333222225555555555544321                         01222344444444444443211  111  


Q ss_pred             CCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCcee
Q 043930          250 EYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF  329 (629)
Q Consensus       250 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L  329 (629)
                      .+.+|++|++++|.+++..  .|.++.+|++|+|++|+|+++  ..|.++.+|++|+|++|+|+++.  .+.++++|++|
T Consensus       149 ~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L  222 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIV  222 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEE
T ss_pred             cccccccccccccccccch--hhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEE
Confidence            3444555555555444221  244455555555555555442  12445555555555555555432  24455555555


Q ss_pred             ccc
Q 043930          330 EEK  332 (629)
Q Consensus       330 ~l~  332 (629)
                      +++
T Consensus       223 ~ls  225 (227)
T d1h6ua2         223 TLT  225 (227)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=7.9e-20  Score=175.96  Aligned_cols=194  Identities=15%  Similarity=0.236  Sum_probs=153.9

Q ss_pred             CcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEe
Q 043930          107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFL  186 (629)
Q Consensus       107 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L  186 (629)
                      +.++..++++.+++++..  .+..|.+|++|++++|+|+. + ..+.++++|++|+|++|+|+ .+.......+|++|++
T Consensus        18 l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~-~~~~l~~l~~l~~l~~   92 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELEL   92 (227)
T ss_dssp             HHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGGGTTCCSCCEEEC
T ss_pred             HHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceee-cccccccccccccccc
Confidence            344455677888887653  56778899999999999987 4 45889999999999999998 4433222378888888


Q ss_pred             cCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccc
Q 043930          187 NHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG  266 (629)
Q Consensus       187 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~  266 (629)
                      ++|.++. +                        ..|.++++|++|++++|.+.+..  .+.  ....++.|+++++.+..
T Consensus        93 ~~n~~~~-i------------------------~~l~~l~~L~~l~l~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~  143 (227)
T d1h6ua2          93 SGNPLKN-V------------------------SAIAGLQSIKTLDLTSTQITDVT--PLA--GLSNLQVLYLDLNQITN  143 (227)
T ss_dssp             CSCCCSC-C------------------------GGGTTCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECCSSCCCC
T ss_pred             ccccccc-c------------------------ccccccccccccccccccccccc--hhc--cccchhhhhchhhhhch
Confidence            8887651 1                        23667899999999999887432  233  57889999999999875


Q ss_pred             cchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930          267 SVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       267 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      ..  .+.++.+|++|++++|.+.+.  ..|.++.+|++|+|++|+++++.  .+.++++|++|+|++|+|+++.
T Consensus       144 ~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         144 IS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             CG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG
T ss_pred             hh--hhccccccccccccccccccc--hhhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCc
Confidence            43  477889999999999999864  34889999999999999998863  4888999999999999998765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=4.6e-18  Score=161.26  Aligned_cols=164  Identities=16%  Similarity=0.215  Sum_probs=77.6

Q ss_pred             CcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEe
Q 043930          107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFL  186 (629)
Q Consensus       107 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L  186 (629)
                      +..|++|++++|++.+.  ..+..+++|++|+|++|+|++. . .+..+.+|++|+|++|+|+ .++......+|++|++
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGGGGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-cccccccccccccccc
Confidence            44555666666655532  1245566666666666665542 1 2455556666666655554 2222111134444444


Q ss_pred             cCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccc
Q 043930          187 NHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG  266 (629)
Q Consensus       187 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~  266 (629)
                      ++|.+..                        + ..+.++.+|+++++++|.+++.  ..+.  .+.+|++|++++|++++
T Consensus       120 ~~~~~~~------------------------~-~~l~~l~~l~~l~~~~n~l~~~--~~~~--~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         120 EHNGISD------------------------I-NGLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             TTSCCCC------------------------C-GGGGGCTTCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCC
T ss_pred             ccccccc------------------------c-cccccccccccccccccccccc--cccc--ccccccccccccccccc
Confidence            4433320                        0 1233445555555555555421  1122  34555555555555543


Q ss_pred             cchHHhhcccCccceecccccccccccccccCCCCCcEEEec
Q 043930          267 SVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFS  308 (629)
Q Consensus       267 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  308 (629)
                      . . .|.++.+|++|+|++|+|+++  ..|.++.+|++|+|+
T Consensus       171 i-~-~l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         171 I-V-PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF  208 (210)
T ss_dssp             C-G-GGTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEE
T ss_pred             c-c-cccCCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEcc
Confidence            2 1 244555555555555555432  234555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.2e-18  Score=163.49  Aligned_cols=184  Identities=17%  Similarity=0.245  Sum_probs=144.5

Q ss_pred             CCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCc
Q 043930          110 LIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHN  189 (629)
Q Consensus       110 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n  189 (629)
                      +..+++..+.+.+.+..  ..+.+|++|++++|.+++.  ..+..+++|++|+|++|+|+ .+.......+|++|++++|
T Consensus        26 ~i~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~-~l~~~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          26 TIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDEN  100 (210)
T ss_dssp             HHHHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS
T ss_pred             HHHHHhCcCccCCccCH--HHhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcccc-CccccccCccccccccccc
Confidence            33446666766654332  3567899999999999874  24788999999999999998 4554333378888888888


Q ss_pred             cccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccch
Q 043930          190 WFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP  269 (629)
Q Consensus       190 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~  269 (629)
                      +|++                        + ..+.++.+|++|++++|.+. .+. .+.  .+.+|+++++++|.+++.  
T Consensus       101 ~i~~------------------------l-~~l~~l~~L~~L~l~~~~~~-~~~-~l~--~l~~l~~l~~~~n~l~~~--  149 (210)
T d1h6ta2         101 KVKD------------------------L-SSLKDLKKLKSLSLEHNGIS-DIN-GLV--HLPQLESLYLGNNKITDI--  149 (210)
T ss_dssp             CCCC------------------------G-GGGTTCTTCCEEECTTSCCC-CCG-GGG--GCTTCCEEECCSSCCCCC--
T ss_pred             cccc------------------------c-cccccccccccccccccccc-ccc-ccc--cccccccccccccccccc--
Confidence            7762                        1 13677899999999999987 333 344  689999999999999853  


Q ss_pred             HHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccC
Q 043930          270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKG  333 (629)
Q Consensus       270 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~  333 (629)
                      ..+..+.+|++|++++|++.++.  .|.++.+|++|+|++|+|+++  ..|.++++|++|+|++
T Consensus       150 ~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         150 TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCC--hhhcCCCCCCEEEccC
Confidence            35788999999999999998743  488999999999999999876  3689999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.5e-17  Score=156.37  Aligned_cols=60  Identities=15%  Similarity=0.140  Sum_probs=33.3

Q ss_pred             CCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCc
Q 043930          106 WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFE  169 (629)
Q Consensus       106 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  169 (629)
                      .+.+|++|++++|+|...  +.+..+++|++|+|++|+|++..  .+.++.+|++|++++|.+.
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc
Confidence            345556666666655532  23555666666666666665532  2555666666666655554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.3e-18  Score=164.54  Aligned_cols=218  Identities=12%  Similarity=0.095  Sum_probs=143.0

Q ss_pred             EEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCc-hhhhhCCCCCcEEEccC-
Q 043930           88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF-PTVALTWKRNLYLDLRF-  165 (629)
Q Consensus        88 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~-  165 (629)
                      .+++++.+++ .++..+  .+++++|+|++|+|+......|.++.+|++|+|++|.+...+ ...|.++..+++|++.+ 
T Consensus        12 ~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            4566666665 355444  257899999999998666667889999999999999887643 34577888888888764 


Q ss_pred             CcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930          166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP  243 (629)
Q Consensus       166 n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  243 (629)
                      |++. .+....+.  .+|++|++++|.+.....                      ...+..+..|+.+...++.+...-.
T Consensus        89 n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~----------------------~~~~~~l~~l~~~~~~n~~l~~i~~  145 (242)
T d1xwdc1          89 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPD----------------------VHKIHSLQKVLLDIQDNINIHTIER  145 (242)
T ss_dssp             TTCC-EECTTSEECCTTCCEEEEESCCCCSCCC----------------------CTTTCBSSCEEEEEESCTTCCEECT
T ss_pred             cccc-ccccccccccccccccccchhhhccccc----------------------ccccccccccccccccccccccccc
Confidence            5565 33333333  788888888887762211                      1123334555566666666653322


Q ss_pred             cccccCCCCCCcEEEecCCcccccchHHhhcccCcc-ceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcC
Q 043930          244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIM-RLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG  322 (629)
Q Consensus       244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  322 (629)
                      ..+. +....++.|++++|+++......| +..+++ .+++++|+|+.+....|.++.+|++|+|++|+|+.+....|.+
T Consensus       146 ~~~~-~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  223 (242)
T d1xwdc1         146 NSFV-GLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  223 (242)
T ss_dssp             TSST-TSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred             cccc-cccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence            3332 122467778888888874433333 334443 4456777787655556788888888888888888777777777


Q ss_pred             CCCCceecccC
Q 043930          323 SRDDVYFEEKG  333 (629)
Q Consensus       323 l~~L~~L~l~~  333 (629)
                      +.+|+++++.+
T Consensus       224 l~~L~~l~~~~  234 (242)
T d1xwdc1         224 LKKLRARSTYN  234 (242)
T ss_dssp             CCEEESSSEES
T ss_pred             CcccccCcCCC
Confidence            77777777644

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.73  E-value=8.4e-19  Score=179.75  Aligned_cols=117  Identities=20%  Similarity=0.269  Sum_probs=79.3

Q ss_pred             cccCCCCCcEEEccCCccccc-----CCcccccCCCCCCcEEEecCCccccc----chHHhhcccCccceeccccccccc
Q 043930          221 SIGYMKELQEIILMENQLSGC-----LPSEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNMLTGF  291 (629)
Q Consensus       221 ~l~~l~~L~~L~Ls~n~l~~~-----~p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~  291 (629)
                      .+..+.+|++|+|++|+|...     +...+.  .+.+|++|+|++|.|+..    +...+..+.+|++|+|++|.|++.
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~--~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             hhhhhhhhcccccccccccccccccchhhhhc--chhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            344567888888888887642     222333  567888888888887643    334556778888888888888765


Q ss_pred             ccccc----cC--CCCCcEEEecCCccCCcch----hhhc-CCCCCceecccCCccccc
Q 043930          292 VSADI----CK--LPHLLNFTFSNNFFQGMAM----ECIS-GSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       292 ~~~~l----~~--l~~L~~L~L~~N~l~~~~~----~~l~-~l~~L~~L~l~~N~l~~~  339 (629)
                      ....+    ..  ...|++|+|++|.|+....    ..+. ++..|++|+|++|+|.+.
T Consensus       259 g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            33333    22  3578888888888876432    3332 467888888888888643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.5e-17  Score=156.26  Aligned_cols=181  Identities=13%  Similarity=0.234  Sum_probs=133.0

Q ss_pred             CCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecC
Q 043930          109 DLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNH  188 (629)
Q Consensus       109 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~  188 (629)
                      ++..+.++.+.+++.+  ....+.+|++|++++|.|+..  ..+..+++|++|+|++|+|+ .+.......+|++|++++
T Consensus        19 ~~i~~~l~~~~~~~~~--~~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~l~~l~~L~~L~l~~   93 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITPLKNLTKLVDILMNN   93 (199)
T ss_dssp             HHHHHHTTCSSTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCS
T ss_pred             HHHHHHhCCCCCCCcc--CHHHhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-CcccccCCcccccccccc
Confidence            3344566777777543  235678999999999999863  45788999999999999998 444322227888888888


Q ss_pred             ccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc
Q 043930          189 NWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV  268 (629)
Q Consensus       189 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~  268 (629)
                      |.+..                        + ..|.++.+|++|++++|.+.+.  ..+.  .+.+|++|++++|++.. +
T Consensus        94 n~~~~------------------------~-~~l~~l~~L~~L~l~~~~~~~~--~~~~--~l~~L~~L~l~~n~l~~-~  143 (199)
T d2omxa2          94 NQIAD------------------------I-TPLANLTNLTGLTLFNNQITDI--DPLK--NLTNLNRLELSSNTISD-I  143 (199)
T ss_dssp             SCCCC------------------------C-GGGTTCTTCSEEECCSSCCCCC--GGGT--TCTTCSEEECCSSCCCC-C
T ss_pred             ccccc------------------------c-cccccccccccccccccccccc--cccc--hhhhhHHhhhhhhhhcc-c
Confidence            77652                        1 1356778888999988887632  2333  67889999999988873 3


Q ss_pred             hHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCcee
Q 043930          269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF  329 (629)
Q Consensus       269 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L  329 (629)
                       ..+..+.+|++|++++|++++.  ..|.++.+|++|+|++|+|+++  ..+.++++|++|
T Consensus       144 -~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         144 -SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             -GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             -ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence             3577888899999999988864  3478888999999999988875  346777777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.5e-19  Score=185.56  Aligned_cols=137  Identities=17%  Similarity=0.127  Sum_probs=85.8

Q ss_pred             hhHHHHhcCCccccc----CCccccCCCCCcEEEccCCcccccCCcc----cccCCCCCCcEEEecCCcccccchHHh--
Q 043930          203 LARYIVLSSNNFTGC----LPRSIGYMKELQEIILMENQLSGCLPSE----IGSGEYKNLTVFDIRSNKFHGSVPQSF--  272 (629)
Q Consensus       203 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~--  272 (629)
                      .++.|++++|.+...    +...+..+..++.+++++|.+.+.....    +. .....|+++++++|.++......+  
T Consensus       256 ~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~-~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         256 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL-EPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT-STTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhcccc-ccccccccccccccchhhhhhhhccc
Confidence            356666666665432    2223445677777788777775332211    11 134578888888888775543333  


Q ss_pred             --hcccCccceeccccccccccccc----cc-CCCCCcEEEecCCccCCcc----hhhhcCCCCCceecccCCcccccc
Q 043930          273 --ANLNNIMRLDISDNMLTGFVSAD----IC-KLPHLLNFTFSNNFFQGMA----MECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       273 --~~l~~L~~L~Ls~N~l~~~~~~~----l~-~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                        ..+.+|++|+|++|.|++.....    +. ....|++|+|++|.|++..    .+.+..+++|++|+|++|.|++..
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHH
Confidence              34457888888888886543222    22 3566888888888887643    344566788888888888887643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=4e-17  Score=152.36  Aligned_cols=131  Identities=19%  Similarity=0.280  Sum_probs=77.8

Q ss_pred             CcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCc
Q 043930          158 NLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQ  237 (629)
Q Consensus       158 L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  237 (629)
                      .++++.++++++ .||..+. .++++|+|++|.|++.+                      ....|.++.+|++|+|++|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp-~~l~~L~Ls~N~i~~~~----------------------~~~~f~~l~~L~~L~L~~N~   65 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP-LHTTELLLNDNELGRIS----------------------SDGLFGRLPHLVKLELKRNQ   65 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC-TTCSEEECCSCCCCSBC----------------------CSCSGGGCTTCCEEECCSSC
T ss_pred             CCEEEEeCCCcC-ccCCCCC-CCCCEEEeCCCCCcccc----------------------cccccCCCceEeeeeccccc
Confidence            345666666666 5665543 46666666666665322                      12334556666666666666


Q ss_pred             ccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930          238 LSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG  314 (629)
Q Consensus       238 l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  314 (629)
                      |.+.....+.  .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+++..+.|..+.+|++|+|++|.+..
T Consensus        66 i~~~~~~~~~--~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          66 LTGIEPNAFE--GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCBCTTTTT--TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccccc--cccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            6644444444  55666666666666665555556666666666666666666555556666666666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.69  E-value=4.8e-18  Score=174.03  Aligned_cols=230  Identities=16%  Similarity=0.138  Sum_probs=164.3

Q ss_pred             ccEEEEEcCCCCccccC----chhhhCCcCCCEEECCCCCCCcc----------ChhhhcCCCCCcEEEccCCcCCCCc-
Q 043930           84 RFVAMIDLNKAEIAAHL----PPEMGWLLDLIYFHANTNRLCGI----------IPETFANMHRLEEFDVSNNRLVGPF-  148 (629)
Q Consensus        84 ~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~Ls~n~l~~~~-  148 (629)
                      ..|+.|+|++|.|....    ...+..+++|+.|+|+++.+...          +...+..+.+|++|+|++|.+.... 
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            45788999999886543    33456678999999988754321          3344667889999999999887643 


Q ss_pred             ---hhhhhCCCCCcEEEccCCcCccCCCchh--------------ccCCCCEEEecCccccccCchhhhh-----hhhHH
Q 043930          149 ---PTVALTWKRNLYLDLRFNNFEGELPPEL--------------FQTGLDIIFLNHNWFRGSIPETIGE-----SLARY  206 (629)
Q Consensus       149 ---~~~l~~l~~L~~L~Ls~n~l~~~ip~~~--------------~~~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~  206 (629)
                         ...+..+++|++|+|++|.|.......+              ....|+.|++++|.++......+..     ..|++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence               3344567899999999998753211111              1157899999999887554444432     36888


Q ss_pred             HHhcCCccccc-----CCccccCCCCCcEEEccCCccccc----CCcccccCCCCCCcEEEecCCcccccchH----Hhh
Q 043930          207 IVLSSNNFTGC-----LPRSIGYMKELQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQ----SFA  273 (629)
Q Consensus       207 L~l~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~  273 (629)
                      |+|++|+|...     +...+..+.+|++|+|++|.|+..    +...+.  .+.+|++|+|++|.|++....    .+.
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~--~~~~L~~L~Ls~n~i~~~g~~~l~~~l~  268 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNLRELGLNDCLLSARGAAAVVDAFS  268 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--GCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             cccccccccccccccchhhhhcchhhhccccccccccccccccccccccc--ccccchhhhhhcCccCchhhHHHHHHhh
Confidence            99999988643     345577889999999999998643    333444  678999999999999865333    333


Q ss_pred             c--ccCccceeccccccccccccc----cc-CCCCCcEEEecCCccCCc
Q 043930          274 N--LNNIMRLDISDNMLTGFVSAD----IC-KLPHLLNFTFSNNFFQGM  315 (629)
Q Consensus       274 ~--l~~L~~L~Ls~N~l~~~~~~~----l~-~l~~L~~L~L~~N~l~~~  315 (629)
                      .  ...|++|+|++|.|+......    +. ++.+|++|+|++|++...
T Consensus       269 ~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            3  357999999999997643332    32 578999999999999764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.6e-17  Score=159.51  Aligned_cols=200  Identities=15%  Similarity=0.082  Sum_probs=144.1

Q ss_pred             cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCcc-ChhhhcCCCCCcEEEccC-CcCCCCchhhhhCCCCCcE
Q 043930           83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGI-IPETFANMHRLEEFDVSN-NRLVGPFPTVALTWKRNLY  160 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~  160 (629)
                      ..++++|||++|+|..+....|.++.+|++|+|++|.+.+. ....|.++.++++|++.+ |.+.......|.++.+|++
T Consensus        28 ~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            45799999999999877667899999999999999988754 345789999999999865 6777766677899999999


Q ss_pred             EEccCCcCccCCCchhcc---CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCC-CCCcEEEccCC
Q 043930          161 LDLRFNNFEGELPPELFQ---TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYM-KELQEIILMEN  236 (629)
Q Consensus       161 L~Ls~n~l~~~ip~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~Ls~n  236 (629)
                      |++++|+++ .+....+.   ..++.+...++.+..                       .....|.++ ..++.|++++|
T Consensus       108 l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~-----------------------i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1         108 LLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHT-----------------------IERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             EEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCE-----------------------ECTTSSTTSBSSCEEEECCSS
T ss_pred             cccchhhhc-cccccccccccccccccccccccccc-----------------------ccccccccccccceeeecccc
Confidence            999999997 44443333   344444445544441                       112233333 47888888888


Q ss_pred             cccccCCcccccCCCCCCcEE-EecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecC
Q 043930          237 QLSGCLPSEIGSGEYKNLTVF-DIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSN  309 (629)
Q Consensus       237 ~l~~~~p~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  309 (629)
                      +++ .+...++  ...+++++ ++++|+|+..-...|.++.+|++|+|++|+|+.+....|.++.+|++|++.+
T Consensus       164 ~l~-~i~~~~~--~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         164 GIQ-EIHNCAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCC-EECTTTT--TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccc-ccccccc--cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            888 4444443  45555555 5677788754455678889999999999998876556677777777766643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-17  Score=165.98  Aligned_cols=208  Identities=13%  Similarity=0.119  Sum_probs=117.4

Q ss_pred             CcCCCEEECCCCCCCcc-ChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCC-cCccCCCchhcc--CCCC
Q 043930          107 LLDLIYFHANTNRLCGI-IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN-NFEGELPPELFQ--TGLD  182 (629)
Q Consensus       107 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~ip~~~~~--~~L~  182 (629)
                      ..+|++|||++|.+.+. +...+.++.+|++|+|++|.+.+.....+..+.+|++|+|++| .+++..-..+..  .+|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34566666666655432 2334555666666666666665555555556666666666664 333211111111  5566


Q ss_pred             EEEecCcc-ccccCchhhhhhhhHHHHhcCCcccccCCccc-cCCCCCcEEEccCC--cccccCCcccccCCCCCCcEEE
Q 043930          183 IIFLNHNW-FRGSIPETIGESLARYIVLSSNNFTGCLPRSI-GYMKELQEIILMEN--QLSGCLPSEIGSGEYKNLTVFD  258 (629)
Q Consensus       183 ~L~L~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n--~l~~~~p~~~~~~~l~~L~~L~  258 (629)
                      +|+|++|. +++..                      +...+ ....+|+.|+|+++  .+++..-..+. .++++|++|+
T Consensus       125 ~L~ls~c~~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~-~~~~~L~~L~  181 (284)
T d2astb2         125 ELNLSWCFDFTEKH----------------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-RRCPNLVHLD  181 (284)
T ss_dssp             EEECCCCTTCCHHH----------------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-HHCTTCSEEE
T ss_pred             cccccccccccccc----------------------chhhhcccccccchhhhcccccccccccccccc-cccccccccc
Confidence            66665542 22100                      00111 12357888888865  34332222222 1578888888


Q ss_pred             ecCC-cccccchHHhhcccCccceecccc-cccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          259 IRSN-KFHGSVPQSFANLNNIMRLDISDN-MLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       259 Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                      |++| .+++.....+.++++|++|+|++| .|++.....+.++.+|++|+++++.-.+........+++|+   +.++.+
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~l  258 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHF  258 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCS
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccC
Confidence            8886 477666677888888888888885 57766666677888889998888732223333333455544   455566


Q ss_pred             cccc
Q 043930          337 AEME  340 (629)
Q Consensus       337 ~~~~  340 (629)
                      ++..
T Consensus       259 s~~~  262 (284)
T d2astb2         259 TTIA  262 (284)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            5443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=7e-17  Score=150.69  Aligned_cols=153  Identities=19%  Similarity=0.197  Sum_probs=120.1

Q ss_pred             cccEEEEEcCCCCccccC-chhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930           83 ERFVAMIDLNKAEIAAHL-PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL  161 (629)
Q Consensus        83 ~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  161 (629)
                      ...+++|+|++|+|+..+ ...|.++.+|++|+|++|++.+.....|..+.+|++|+|++|+|+...+..|.++.+|++|
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence            357899999999997644 5677899999999999999998888899999999999999999998777788999999999


Q ss_pred             EccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccc
Q 043930          162 DLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS  239 (629)
Q Consensus       162 ~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  239 (629)
                      +|++|+|+ .++...|.  .+|++|+|++|.+.......+....++.+.+..+.+....+   ..+.+++.++|+.|.|.
T Consensus       108 ~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p---~~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         108 NLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             ECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS---TTTTTSBGGGSCTTTCC
T ss_pred             ccCCcccc-ccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC---hhhcCCEeeecCHhhCc
Confidence            99999998 66666654  88999999999988554333333456677777666654433   33455666677777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.7e-18  Score=180.12  Aligned_cols=187  Identities=12%  Similarity=0.054  Sum_probs=124.4

Q ss_pred             hCCCCCcEEEccCCcCccCCC----chhcc--CCCCEEEecCccccccCchhhh-----hhhhHHHHhcCCcccccCCc-
Q 043930          153 LTWKRNLYLDLRFNNFEGELP----PELFQ--TGLDIIFLNHNWFRGSIPETIG-----ESLARYIVLSSNNFTGCLPR-  220 (629)
Q Consensus       153 ~~l~~L~~L~Ls~n~l~~~ip----~~~~~--~~L~~L~L~~n~l~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~-  220 (629)
                      .....++.|++++|++.....    .....  ..|+.|++++|.+.......+.     ...++.+++++|.+.+.... 
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            345667777777776642211    11111  5799999999987744322221     13467778888888643222 


Q ss_pred             ---cc-cCCCCCcEEEccCCcccccCCccccc--CCCCCCcEEEecCCcccccchH----Hhh-cccCccceeccccccc
Q 043930          221 ---SI-GYMKELQEIILMENQLSGCLPSEIGS--GEYKNLTVFDIRSNKFHGSVPQ----SFA-NLNNIMRLDISDNMLT  289 (629)
Q Consensus       221 ---~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~--~~l~~L~~L~Ls~n~l~~~~~~----~~~-~l~~L~~L~Ls~N~l~  289 (629)
                         .+ .....|+++++++|.+.+.....+..  ..+.+|++|+|++|+|++....    .+. ....|++|+|++|.|+
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence               12 23468999999999987553333220  1467899999999999754333    332 3567999999999998


Q ss_pred             cc----ccccccCCCCCcEEEecCCccCCcchhh----hc-CCCCCceecccCCccccc
Q 043930          290 GF----VSADICKLPHLLNFTFSNNFFQGMAMEC----IS-GSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       290 ~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~----l~-~l~~L~~L~l~~N~l~~~  339 (629)
                      +.    +.+.+..+.+|++|||++|.|++.....    +. ....|++|++.+|.+.+.
T Consensus       383 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             hHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            64    3344667899999999999998754433    33 335799999999998754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=1.1e-15  Score=155.94  Aligned_cols=234  Identities=23%  Similarity=0.201  Sum_probs=117.2

Q ss_pred             cEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEcc
Q 043930           85 FVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLR  164 (629)
Q Consensus        85 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  164 (629)
                      ++++|||++++++. +++.   +.+|++|+|++|+|+ .++..   +.+|++|++++|+++.. ..   -...|++|+|+
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~---lp~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS---CCTTCCEEECC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh---hcccccccccc
Confidence            35666777776653 4432   346667777777666 33432   34666667776666541 11   11346677777


Q ss_pred             CCcCccCCCchhccCCCCEEEecCccccccCch------------------hhhh-hhhHHHHhcCCccccc--------
Q 043930          165 FNNFEGELPPELFQTGLDIIFLNHNWFRGSIPE------------------TIGE-SLARYIVLSSNNFTGC--------  217 (629)
Q Consensus       165 ~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~------------------~~~~-~~L~~L~l~~n~l~~~--------  217 (629)
                      +|.|+ .++......+|++|++++|.+......                  .+.. ..++.|++.+|.+...        
T Consensus       107 ~n~l~-~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~  185 (353)
T d1jl5a_         107 NNQLE-KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE  185 (353)
T ss_dssp             SSCCS-SCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             ccccc-cccchhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccc
Confidence            77665 555433336667777666655422111                  0111 2234444444433211        


Q ss_pred             ----------CCccccCCCCCcEEEccCCcccccCCccccc---------------CCCCCCcEEEecCCccccc-----
Q 043930          218 ----------LPRSIGYMKELQEIILMENQLSGCLPSEIGS---------------GEYKNLTVFDIRSNKFHGS-----  267 (629)
Q Consensus       218 ----------~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~---------------~~l~~L~~L~Ls~n~l~~~-----  267 (629)
                                ....+..++.|+++++++|.+.. +......               ....++..+++..+.+.+.     
T Consensus       186 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~  264 (353)
T d1jl5a_         186 SIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP  264 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCT
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence                      11224456777888887776552 2211110               0112233333333222110     


Q ss_pred             -----------chHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930          268 -----------VPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL  336 (629)
Q Consensus       268 -----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l  336 (629)
                                 +......+.+|++|+|++|+|+. ++.   .+.+|++|+|++|+|+.+. +   .+.+|++|+|++|.|
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~~l~-~---~~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLAEVP-E---LPQNLKQLHVEYNPL  336 (353)
T ss_dssp             TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCC
T ss_pred             hhcccccccCccccccccCCCCCEEECCCCccCc-ccc---ccCCCCEEECCCCcCCccc-c---ccCCCCEEECcCCcC
Confidence                       00001123567777777777764 332   2456777777777776542 1   235677777777777


Q ss_pred             cccc
Q 043930          337 AEME  340 (629)
Q Consensus       337 ~~~~  340 (629)
                      +.+.
T Consensus       337 ~~lp  340 (353)
T d1jl5a_         337 REFP  340 (353)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            6543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.4e-17  Score=160.76  Aligned_cols=213  Identities=15%  Similarity=0.113  Sum_probs=146.6

Q ss_pred             CcccEEEEEcCCCCcccc-CchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCC-cCCCC-chhhhhCCCCC
Q 043930           82 QERFVAMIDLNKAEIAAH-LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN-RLVGP-FPTVALTWKRN  158 (629)
Q Consensus        82 ~~~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L  158 (629)
                      ...+|++|||+++.+... +...+.++.+|++|+|++|.+.+.....|.++++|++|+|++| .+++. +...+.++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            345799999999988754 3455788999999999999998877788999999999999996 55532 22334578999


Q ss_pred             cEEEccCCc-CccCCCc-hhcc--CCCCEEEecCcc--ccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEE
Q 043930          159 LYLDLRFNN-FEGELPP-ELFQ--TGLDIIFLNHNW--FRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEII  232 (629)
Q Consensus       159 ~~L~Ls~n~-l~~~ip~-~~~~--~~L~~L~L~~n~--l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  232 (629)
                      ++|+|++|. +++..-. .+..  .+|+.|+|+++.  +++.        .+.              ..+.++++|++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~--------~l~--------------~l~~~~~~L~~L~  181 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS--------DLS--------------TLVRRCPNLVHLD  181 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH--------HHH--------------HHHHHCTTCSEEE
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccc--------ccc--------------ccccccccccccc
Confidence            999999964 4422111 1221  689999998753  2211        111              1124467889999


Q ss_pred             ccCC-cccccCCcccccCCCCCCcEEEecCC-cccccchHHhhcccCccceecccccccccccccc-cCCCCCcEEEecC
Q 043930          233 LMEN-QLSGCLPSEIGSGEYKNLTVFDIRSN-KFHGSVPQSFANLNNIMRLDISDNMLTGFVSADI-CKLPHLLNFTFSN  309 (629)
Q Consensus       233 Ls~n-~l~~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L~~  309 (629)
                      |++| .+++.....+.  ++++|++|+|++| +|++.....++++++|++|++++| +.+.....+ ..+++|   ++..
T Consensus       182 L~~~~~itd~~~~~l~--~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~  255 (284)
T d2astb2         182 LSDSVMLKNDCFQEFF--QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINC  255 (284)
T ss_dssp             CTTCTTCCGGGGGGGG--GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESC
T ss_pred             cccccCCCchhhhhhc--ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccC
Confidence            9886 46666666666  6888999999985 677666667788889999999888 443322222 335554   4566


Q ss_pred             CccCCcchhhhcC
Q 043930          310 NFFQGMAMECISG  322 (629)
Q Consensus       310 N~l~~~~~~~l~~  322 (629)
                      ++++++....+..
T Consensus       256 ~~ls~~~~~~~~~  268 (284)
T d2astb2         256 SHFTTIARPTIGN  268 (284)
T ss_dssp             CCSCCTTCSSCSS
T ss_pred             ccCCCCCCCccCc
Confidence            6777655444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.51  E-value=1.7e-13  Score=139.35  Aligned_cols=216  Identities=20%  Similarity=0.166  Sum_probs=142.1

Q ss_pred             cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEec
Q 043930          108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLN  187 (629)
Q Consensus       108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~  187 (629)
                      .+|++|+|++|+++. +++   .+.+|++|+|++|+|+. ++..   +.+|++|++++|+++ .+...  ...|++|+|+
T Consensus        38 ~~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~l--p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL--PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC--CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCC-CCC---CCCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccc-hhhhh--cccccccccc
Confidence            479999999999984 564   35789999999999985 5543   468999999999998 55432  2679999999


Q ss_pred             CccccccCchhhhhhhhHHHHhcCCcccccC------------------CccccCCCCCcEEEccCCcccccCC------
Q 043930          188 HNWFRGSIPETIGESLARYIVLSSNNFTGCL------------------PRSIGYMKELQEIILMENQLSGCLP------  243 (629)
Q Consensus       188 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~------------------~~~l~~l~~L~~L~Ls~n~l~~~~p------  243 (629)
                      +|.|. .++.......|++|++++|.+....                  ...++.+..++.|++++|.+.....      
T Consensus       107 ~n~l~-~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~  185 (353)
T d1jl5a_         107 NNQLE-KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE  185 (353)
T ss_dssp             SSCCS-SCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             ccccc-cccchhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccc
Confidence            99998 4554433467888998888765321                  1234556778888888876652110      


Q ss_pred             ----------cccccCCCCCCcEEEecCCcccccchHHhhc-----------------ccCccceeccccccccc-----
Q 043930          244 ----------SEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN-----------------LNNIMRLDISDNMLTGF-----  291 (629)
Q Consensus       244 ----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----------------l~~L~~L~Ls~N~l~~~-----  291 (629)
                                .......+..|+.|++++|.+.. +...+..                 ..++..+++..+.+.+.     
T Consensus       186 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~  264 (353)
T d1jl5a_         186 SIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP  264 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCT
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence                      00011256788999998887653 2211111                 11222233333222211     


Q ss_pred             -----------ccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930          292 -----------VSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       292 -----------~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                                 +......+.+|++|+|++|+|..+.    ..+.+|++|+|++|+|++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp----~~~~~L~~L~L~~N~L~~l~  320 (353)
T d1jl5a_         265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVP  320 (353)
T ss_dssp             TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC
T ss_pred             hhcccccccCccccccccCCCCCEEECCCCccCccc----cccCCCCEEECCCCcCCccc
Confidence                       0111123468999999999998653    23678999999999998654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=130.95  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=61.0

Q ss_pred             cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccc-ccccCCCC
Q 043930          223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVS-ADICKLPH  301 (629)
Q Consensus       223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~  301 (629)
                      ..+.+|++|+|++|.|+ .+ ..+.  .+.+|++|+|++|+|++.....+..+.+|++|+|++|+|.+... ..+.++++
T Consensus        38 ~~l~~L~~L~Ls~N~i~-~l-~~~~--~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~  113 (162)
T d1a9na_          38 ATLDQFDAIDFSDNEIR-KL-DGFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS  113 (162)
T ss_dssp             GGTTCCSEEECCSSCCC-EE-CCCC--CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTT
T ss_pred             cccccCCEEECCCCCCC-cc-CCcc--cCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccc
Confidence            44556666666666665 33 2233  45666666666666664433445556666666666666654321 34566677


Q ss_pred             CcEEEecCCccCCcc---hhhhcCCCCCceec
Q 043930          302 LLNFTFSNNFFQGMA---MECISGSRDDVYFE  330 (629)
Q Consensus       302 L~~L~L~~N~l~~~~---~~~l~~l~~L~~L~  330 (629)
                      |++|+|++|.++...   ...+..+++|++||
T Consensus       114 L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         114 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777777777665442   23456667777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=3.6e-14  Score=121.71  Aligned_cols=102  Identities=25%  Similarity=0.383  Sum_probs=50.0

Q ss_pred             EEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecC
Q 043930          230 EIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSN  309 (629)
Q Consensus       230 ~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  309 (629)
                      +|+|++|+|+ .+. .+.  .+.+|++|+|++|+|+ .++..|..+.+|++|+|++|.|++.  ..+.++.+|++|++++
T Consensus         2 ~L~Ls~n~l~-~l~-~l~--~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLE--QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCS-SCC-CGG--GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCS
T ss_pred             EEEcCCCCCC-CCc-ccc--cCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCC
Confidence            4555555554 332 233  4455555555555554 3334455555555555555555542  2345555555555555


Q ss_pred             CccCCcc-hhhhcCCCCCceecccCCcccc
Q 043930          310 NFFQGMA-MECISGSRDDVYFEEKGNCLAE  338 (629)
Q Consensus       310 N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~  338 (629)
                      |+|.++. ...+..+.+|++|++++|.|++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            5555432 2344455555555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=2e-14  Score=123.29  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=89.4

Q ss_pred             HHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccc
Q 043930          207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDN  286 (629)
Q Consensus       207 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  286 (629)
                      |+|++|+++ .+. .++++.+|++|+|++|+|+ .++..+.  .+.+|++|+|++|+|++ ++ .|.++.+|++|+|++|
T Consensus         3 L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~--~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           3 LHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALA--ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGG--GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             EEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhh--hhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            455555555 332 4788899999999999998 6777776  79999999999999985 43 5889999999999999


Q ss_pred             ccccccc-ccccCCCCCcEEEecCCccCCc---chhhhcCCCCCcee
Q 043930          287 MLTGFVS-ADICKLPHLLNFTFSNNFFQGM---AMECISGSRDDVYF  329 (629)
Q Consensus       287 ~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~---~~~~l~~l~~L~~L  329 (629)
                      +|.+... ..+.++.+|++|+|++|.+.+.   ....+..+++|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9986532 5678899999999999998654   23344456666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.5e-14  Score=127.17  Aligned_cols=115  Identities=13%  Similarity=0.158  Sum_probs=97.9

Q ss_pred             cccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCC
Q 043930          221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLP  300 (629)
Q Consensus       221 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  300 (629)
                      .|.++.+|++|+|++|+|+ .+...+.  .+.+|++|||++|+|+. + ..|..+.+|++|+|++|+|.++....+..+.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~--~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGA--TLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGG--GTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCcccc--ccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccc
Confidence            3567789999999999998 5655444  68999999999999984 3 4588999999999999999986666677899


Q ss_pred             CCcEEEecCCccCCcch-hhhcCCCCCceecccCCcccccc
Q 043930          301 HLLNFTFSNNFFQGMAM-ECISGSRDDVYFEEKGNCLAEME  340 (629)
Q Consensus       301 ~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~  340 (629)
                      +|++|+|++|+|.++.. ..+..+++|++|++++|.+++..
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCcccccc
Confidence            99999999999988643 67889999999999999997654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.38  E-value=1.9e-14  Score=134.35  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             ccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccc-ccccCCC
Q 043930          222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVS-ADICKLP  300 (629)
Q Consensus       222 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~  300 (629)
                      |.+|++|++|+|++|.|+ .++..+.  .+.+|++|+|++|+|+. + ..+.++.+|++|+|++|+|++... ..|..+.
T Consensus        66 l~~l~~L~~L~Ls~N~i~-~i~~~~~--~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~  140 (198)
T d1m9la_          66 LSGMENLRILSLGRNLIK-KIENLDA--VADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALD  140 (198)
T ss_dssp             HHHHTTCCEEECCEEEEC-SCSSHHH--HHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTT
T ss_pred             ccCCccccChhhcccccc-ccccccc--ccccccccccccccccc-c-ccccccccccccccccchhccccccccccCCC
Confidence            444556666666666665 3333222  23457777777777763 2 346677777777777777765322 3466777


Q ss_pred             CCcEEEecCCccCCcch----------hhhcCCCCCceecccCCccc
Q 043930          301 HLLNFTFSNNFFQGMAM----------ECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       301 ~L~~L~L~~N~l~~~~~----------~~l~~l~~L~~L~l~~N~l~  337 (629)
                      +|++|+|++|.+.....          ..+..+++|++||  +..|+
T Consensus       141 ~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             TCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            77777777776644322          2256677888876  44444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=4.8e-14  Score=131.53  Aligned_cols=64  Identities=13%  Similarity=0.100  Sum_probs=28.2

Q ss_pred             hhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCcccc
Q 043930          126 ETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFR  192 (629)
Q Consensus       126 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~  192 (629)
                      ..|..|.+|++|+|++|+|+..  ..+..+++|++|+|++|+|+ .++..... .+|++|++++|.|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             hHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            3444444455555555444432  12444445555555555444 33322222 34444555444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.4e-12  Score=113.11  Aligned_cols=108  Identities=15%  Similarity=0.112  Sum_probs=70.8

Q ss_pred             CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCC-cccccchHHhhcccCccceecccccccccccccccCCCCCcE
Q 043930          226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSN-KFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLN  304 (629)
Q Consensus       226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  304 (629)
                      ...+.++++++++. .++..+.  .+++|++|+|++| .|+......|.++.+|++|+|++|+|+++....|..+.+|++
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~--~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CCCCeEEecCCCCc-cCccccc--CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            34455666666666 4455554  5667777777655 366555566777777777777777777666666777777777


Q ss_pred             EEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930          305 FTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       305 L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                      |+|++|+|+.+..+.|..+ .|++|+|++|.|.
T Consensus        85 L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            7777777776655555544 5777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-11  Score=109.10  Aligned_cols=103  Identities=16%  Similarity=0.091  Sum_probs=89.2

Q ss_pred             EEEcCCCCccccCchhhhCCcCCCEEECCCC-CCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCC
Q 043930           88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANTN-RLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN  166 (629)
Q Consensus        88 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  166 (629)
                      .+++.++++.. ++..+..+++|++|+|.+| .|+.+...+|.++.+|++|+|++|+|+.+...+|..+.+|++|+|++|
T Consensus        12 ~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            36667777754 4567888999999999876 588777788999999999999999999877888999999999999999


Q ss_pred             cCccCCCchhcc-CCCCEEEecCcccc
Q 043930          167 NFEGELPPELFQ-TGLDIIFLNHNWFR  192 (629)
Q Consensus       167 ~l~~~ip~~~~~-~~L~~L~L~~n~l~  192 (629)
                      +|+ .++..++. .+|++|+|++|.|.
T Consensus        91 ~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCc-ccChhhhccccccccccCCCccc
Confidence            998 88888776 78999999999986

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.2e-09  Score=97.72  Aligned_cols=81  Identities=14%  Similarity=0.083  Sum_probs=46.5

Q ss_pred             CCCCCcEEEecCCccccc--chHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcch-------hhh
Q 043930          250 EYKNLTVFDIRSNKFHGS--VPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM-------ECI  320 (629)
Q Consensus       250 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-------~~l  320 (629)
                      .+.+|++|+|++|+|++.  +...+..+.+|+.|+|++|.|.+.....+.+..+|++|+|++|.+.+...       ..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            355666666666666542  23445566667777777777665433233344456777777776654322       335


Q ss_pred             cCCCCCceec
Q 043930          321 SGSRDDVYFE  330 (629)
Q Consensus       321 ~~l~~L~~L~  330 (629)
                      ..+++|++||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5666777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.42  E-value=8.9e-08  Score=85.53  Aligned_cols=113  Identities=13%  Similarity=0.113  Sum_probs=81.2

Q ss_pred             cCCCCCcEEEccCC-ccccc----CCcccccCCCCCCcEEEecCCccccc----chHHhhcccCccceecccccccccc-
Q 043930          223 GYMKELQEIILMEN-QLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNMLTGFV-  292 (629)
Q Consensus       223 ~~l~~L~~L~Ls~n-~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~-  292 (629)
                      .+.++|++|+|+++ .|...    +...+.  ...+|++|+|++|.|+..    +.+.+.....|++|+|++|.|++.. 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~--~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHh--hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            44578999999874 46533    223333  567899999999988743    3345566788999999999988643 


Q ss_pred             ---cccccCCCCCcEEEecCCccCCc-------chhhhcCCCCCceecccCCccc
Q 043930          293 ---SADICKLPHLLNFTFSNNFFQGM-------AMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       293 ---~~~l~~l~~L~~L~L~~N~l~~~-------~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                         .+.+.....|++|+|++|.+..+       +.+.+.....|+.|+++.+...
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCch
Confidence               33456678899999998876543       3456667789999998776543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.9e-08  Score=89.50  Aligned_cols=106  Identities=18%  Similarity=0.101  Sum_probs=74.4

Q ss_pred             CCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc--cccccCCCCCcE
Q 043930          227 ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV--SADICKLPHLLN  304 (629)
Q Consensus       227 ~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~L~~  304 (629)
                      .++.|+++++....    .+.  .+..+..|++.++.+. .+...+.++.+|++|+|++|+|+++.  ...+.++.+|+.
T Consensus        23 ~~~~Ldls~l~~~~----~l~--~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~   95 (162)
T d1koha1          23 SQQALDLKGLRSDP----DLV--AQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI   95 (162)
T ss_dssp             SSCCBCCCCCSSCT----TTT--TTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCC
T ss_pred             hhCeeecccCCCCc----hhh--hccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccc
Confidence            44566666655331    122  2334444555554443 44455678999999999999998752  345677999999


Q ss_pred             EEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930          305 FTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM  339 (629)
Q Consensus       305 L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  339 (629)
                      |+|++|.|+++....+.+..+|+.|++.+|.+.+.
T Consensus        96 L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          96 LNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             cccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            99999999988665555666899999999998753

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.27  E-value=2.9e-07  Score=82.08  Aligned_cols=42  Identities=17%  Similarity=0.173  Sum_probs=17.7

Q ss_pred             hcCCCCCcEEEccCCcCCC----CchhhhhCCCCCcEEEccCCcCc
Q 043930          128 FANMHRLEEFDVSNNRLVG----PFPTVALTWKRNLYLDLRFNNFE  169 (629)
Q Consensus       128 ~~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~  169 (629)
                      +.....|++|+|++|.|..    .+...+.....|++|+|++|.|+
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3344444444444444431    12222333444445555544444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.96  E-value=1.2e-06  Score=77.93  Aligned_cols=114  Identities=10%  Similarity=0.106  Sum_probs=77.9

Q ss_pred             ccCCCCCcEEEccC-CcccccC----CcccccCCCCCCcEEEecCCccccc----chHHhhcccCccceecccccccccc
Q 043930          222 IGYMKELQEIILME-NQLSGCL----PSEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNMLTGFV  292 (629)
Q Consensus       222 l~~l~~L~~L~Ls~-n~l~~~~----p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~  292 (629)
                      ..+.++|++|+|++ +.|+...    ...+.  .+.+|++|+|++|.++..    +.+.+.....|+.|++++|.+++..
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~--~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHh--cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            34567899999987 4565332    22333  567899999999988754    3344556788999999999887543


Q ss_pred             ----cccccCCCCCcEEEec--CCccCCc----chhhhcCCCCCceecccCCccc
Q 043930          293 ----SADICKLPHLLNFTFS--NNFFQGM----AMECISGSRDDVYFEEKGNCLA  337 (629)
Q Consensus       293 ----~~~l~~l~~L~~L~L~--~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~  337 (629)
                          ...+....+|+.++|+  +|.+++.    +.+.+..++.|+.|++..+...
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence                3455667888876664  5667653    3345567889999998877554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.93  E-value=1.6e-06  Score=76.91  Aligned_cols=64  Identities=14%  Similarity=0.063  Sum_probs=29.8

Q ss_pred             CCcCCCEEECCC-CCCCcc----ChhhhcCCCCCcEEEccCCcCCCC----chhhhhCCCCCcEEEccCCcCc
Q 043930          106 WLLDLIYFHANT-NRLCGI----IPETFANMHRLEEFDVSNNRLVGP----FPTVALTWKRNLYLDLRFNNFE  169 (629)
Q Consensus       106 ~l~~L~~L~L~~-n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~  169 (629)
                      +...|++|+|++ +.|+..    +..++..+.+|++|+|++|.+...    +...+.....|++|++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            345555555554 234321    223334455555555555555432    1222334455555555555554