Citrus Sinensis ID: 043931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
DETPSRHLPVLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccEEEEEcccccEEEHHHcccccccHHHHHccccEEccccccEEEEEEEEcEEEEEccccEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHEHEEccccccEEEEEEEEccEEEEEccccEEEEcccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEcccEEEEc
Coil and Loop (DISEMBL)
detpsrhlpvlKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYlsttagpiagllFISTNKVAFCSERSLKFYSSSGELIRVHYKVLiplskikrvDQRVNMKKQSEKYIEVYTvdgfdfwfm
Flexible Loop (DISEMBL)
detpsrhlpvlkrmsklgkkannfatgvkehvrlapkitetvkgklslgakIIQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVliplskikrvdqrvnmkkqsekyievytvdgfDFWFM
Low Complexity Region (SEG)
DETPSRHLPVLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM
Disordered region (IsUnstruct)
***********************FATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWF*
Disordered Region (DISOPRED)
*******************KANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS*****************YIEVYTVDGFDFWFM
Disordered Region (DISEMBL)
DETPSRHLPVLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM
Disordered Region (DISPRO)
******HLPVLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DETPSRHLPVLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q9FTA0	222	GEM-like protein 4 OS=Ara	yes	no	0.913	0.662	0.657	1e-52
Q9FMW4	219	Putative GEM-like protein	no	no	0.888	0.652	0.657	5e-50
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.888	0.655	0.636	2e-48
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.962	0.738	0.589	1e-47
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.950	0.562	0.411	1e-32
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.931	0.643	0.384	1e-29
Q8S8F8	299	GLABRA2 expression modula	no	no	0.925	0.498	0.386	2e-29
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.925	0.575	0.36	6e-27
Q9M063	239	Putative GEM-like protein	no	no	0.801	0.539	0.346	3e-21

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  205 bits (521), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 120/152 (78%), Gaps = 5/152 (3%)

Query: 10  VLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVK 69
           +LKR     KK + F  GV++  ++ PK+TETVK KLSLGA+I+QVGG+E+IFK+LF V 
Sbjct: 50  ILKR-----KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVS 104

Query: 70  EGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS 129
           EGE L K  QCYLSTTAGPIAGLLFIS+ K+AFCSERS+K  S  G++IRVHYKV IPL 
Sbjct: 105 EGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLC 164

Query: 130 KIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           KI RV+Q  N KK S+KY+EV TVDGFDFWFM
Sbjct: 165 KIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFM 196

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  196 bits (498), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/143 (65%), Positives = 114/143 (79%)

Query: 19  KKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKAC 78
           KK ++F  GV++  +L PK+TETVK KLSLGA+I+Q+GG+E+I+K+LF V + E L KA 
Sbjct: 55  KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAY 114

Query: 79  QCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRV 138
           QCYLSTTAGPIAGLLFIS+ K+AFCSERS+K  S  GEL RVHYKV IPL KI  V+Q  
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQ 174

Query: 139 NMKKQSEKYIEVYTVDGFDFWFM 161
           N  K S+KY+EV TVDGFDFWFM
Sbjct: 175 NTTKPSQKYLEVVTVDGFDFWFM 197

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  191 bits (485), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/143 (63%), Positives = 112/143 (78%)

Query: 19  KKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKAC 78
           KK ++F  G ++  +L PK+TETVK KLSLGAKI+Q+GG+E+I+K+LF V + E L KA 
Sbjct: 55  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAY 114

Query: 79  QCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRV 138
           QCYLSTTAGPIAGLLFIS+ K+AFCSERS+K  S  G L RVHYKV IPL KI  V+Q  
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQ 174

Query: 139 NMKKQSEKYIEVYTVDGFDFWFM 161
           N KK S+KY+E+ T+D FDFWFM
Sbjct: 175 NTKKPSQKYLEIVTIDNFDFWFM 197

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  188 bits (478), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 117/156 (75%), Gaps = 1/156 (0%)

Query: 7   HLPVLKRMSKLGKK-ANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQL 65
            +P   ++S L KK  ++F  G ++  +L PK+TETVK KLSLGAKI+Q+GG+E+I+K+L
Sbjct: 34  QIPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRL 93

Query: 66  FSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVL 125
           F V + E L KA QCYLSTT G IAGLLFIS+ K+AFCSERS+K  S  G+L RVHYKV 
Sbjct: 94  FKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVS 153

Query: 126 IPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           IPL KI  V+Q  N KK S++Y+EV TVD +DFWFM
Sbjct: 154 IPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFM 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 95/153 (62%)

Query: 9   PVLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSV 68
           PV+       +KA   A  +  +++  P ++ET  GK++L AK I  GG E +F+Q+F  
Sbjct: 92  PVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGT 151

Query: 69  KEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPL 128
           +  E L K   CYLSTT GP+AG +++S  +VAFCS+R L F + SG+    +Y+V++PL
Sbjct: 152 EPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPL 211

Query: 129 SKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           + +  V+  V  +   EKYI++ TVDG DFWFM
Sbjct: 212 ANVATVNPVVVKETPPEKYIQLTTVDGHDFWFM 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 97/151 (64%), Gaps = 1/151 (0%)

Query: 12  KRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEG 71
           K++    +KA     G+K+H++ +P I++    +LS G K+I  GG ER+F++ F V   
Sbjct: 58  KKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAV 117

Query: 72  ENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSS-GELIRVHYKVLIPLSK 130
           E LL +  CY+STT+GP+ G+++IS  ++AFCS+ +++  SS+ G  +  +YKV++   K
Sbjct: 118 EKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEK 177

Query: 131 IKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           I  +    N+ K SE+Y+ + T DGF+FWFM
Sbjct: 178 ISSISSSTNVLKPSERYVHMVTRDGFEFWFM 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 93/150 (62%), Gaps = 1/150 (0%)

Query: 12  KRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEG 71
           KR+++  KK  + A    +H+R AP   +   G+++   K+   GG E+IF+Q F     
Sbjct: 127 KRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPE 186

Query: 72  ENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKI 131
           E LL +  CYLST+AGP+ G+L+IS+ K+A+CS+  L  Y +  +    +YKV+IPL ++
Sbjct: 187 EQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLS-YKNGDQTEWSYYKVVIPLHQL 245

Query: 132 KRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           K V+   ++   +EKYI+V +VD  +FWFM
Sbjct: 246 KAVNPSASIVNPAEKYIQVISVDNHEFWFM 275

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 91/150 (60%), Gaps = 1/150 (0%)

Query: 12  KRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEG 71
           K  +   KKA + A    +H++  P + +    +++ G KI+  GG E++FKQ F     
Sbjct: 90  KMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPD 149

Query: 72  ENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKI 131
           E LLK   CYLST+AGP+ G++++ST+K+AF S+  L  Y    + +  +YKV++P +++
Sbjct: 150 EKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLS-YKEGEQTLWSYYKVVLPANQL 208

Query: 132 KRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           K V+   +    S+KYI+V ++D  +FWFM
Sbjct: 209 KAVNPSTSRVNTSDKYIQVISIDNHEFWFM 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 21/150 (14%)

Query: 12  KRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEG 71
           +R+ +   KA + A    +H   A        G+++   K++  GG E+IF+Q F     
Sbjct: 86  RRVGEAAMKAESLAGNTWQHPLRA------AMGRIAQSTKVLAEGGYEKIFRQTFETVPE 139

Query: 72  ENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKI 131
           E L  +  CYLST+AGP+ G+L++ST K+A+CS+ SL               V+IPL ++
Sbjct: 140 EQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL---------------VVIPLHQL 184

Query: 132 KRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           K V+  ++    +EKYI+V +VD  +FWFM
Sbjct: 185 KSVNPSISTVNPAEKYIQVISVDDHEFWFM 214

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
225463675	218	PREDICTED: GEM-like protein 4 [Vitis vin	0.993	0.733	0.680	2e-61
224083864	221	predicted protein [Populus trichocarpa]	0.944	0.687	0.756	8e-61
356519417	224	PREDICTED: GEM-like protein 4-like [Glyc	0.944	0.678	0.712	3e-60
255544121	237	conserved hypothetical protein [Ricinus	0.944	0.641	0.710	6e-60
224106033	221	predicted protein [Populus trichocarpa]	0.944	0.687	0.743	6e-60
356575247	222	PREDICTED: GEM-like protein 4-like [Glyc	0.944	0.684	0.723	9e-60
224093965	234	predicted protein [Populus trichocarpa]	0.944	0.649	0.703	2e-59
224148499	224	predicted protein [Populus trichocarpa]	0.981	0.705	0.677	3e-59
224081322	234	predicted protein [Populus trichocarpa]	0.944	0.649	0.697	7e-59
449523782	221	PREDICTED: GEM-like protein 4-like [Cucu	0.944	0.687	0.703	2e-58

>gi|225463675|ref|XP_002275935.1| PREDICTED: GEM-like protein 4 [Vitis vinifera] gi|297742758|emb|CBI35392.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 138/169 (81%), Gaps = 9/169 (5%)

Query: 2   ETPSRHL---------PVLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKI 52
           E P+RH           V  RM+KLGKKA++F  GV+EHVRLAP I+ETVKGKLSLGA+I
Sbjct: 31  EPPTRHQTPSPPDQGDSVTDRMNKLGKKADSFVNGVREHVRLAPNISETVKGKLSLGARI 90

Query: 53  IQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYS 112
           +QVGGVE+IFK+LF V+EGE LLKA QCYLSTTAGPIAGLLFIST+K+AFCSER++KF S
Sbjct: 91  LQVGGVEKIFKRLFRVREGEKLLKASQCYLSTTAGPIAGLLFISTDKIAFCSERAIKFSS 150

Query: 113 SSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           ++GEL+R+HYKVLIPL KIK  +Q  N KK S+KYIE+ T D F+FWFM
Sbjct: 151 ANGELVRIHYKVLIPLRKIKIANQSENTKKPSQKYIEIVTTDNFEFWFM 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083864|ref|XP_002307149.1| predicted protein [Populus trichocarpa] gi|222856598|gb|EEE94145.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 133/152 (87%)

Query: 10  VLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVK 69
           +LK M+KLGKKA+NFA GV+EHVRL PKI+ETVKGKLSLGAKI+QVGGVE+IFKQLF V 
Sbjct: 49  MLKMMNKLGKKADNFANGVREHVRLGPKISETVKGKLSLGAKILQVGGVEKIFKQLFVVS 108

Query: 70  EGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS 129
           E E LLKA QCYLSTTAGPIAGLLFIST KVAFCSERS+KF S SG+ +RVHYKVL+PL 
Sbjct: 109 EDEKLLKASQCYLSTTAGPIAGLLFISTEKVAFCSERSIKFSSPSGKSVRVHYKVLVPLK 168

Query: 130 KIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           KIK ++Q  N+KK S+KY+E+ TVD F+FWFM
Sbjct: 169 KIKMLNQSENVKKPSQKYLELVTVDDFEFWFM 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519417|ref|XP_003528369.1| PREDICTED: GEM-like protein 4-like [Glycine max]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 135/153 (88%), Gaps = 1/153 (0%)

Query: 10  VLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVK 69
           VL  M++LG+K NN ATG+KEHV+L PKIT+TVKGKLSLGA+I+QVGGVE++F QLFSVK
Sbjct: 51  VLTGMNRLGRKTNNLATGLKEHVKLGPKITDTVKGKLSLGARILQVGGVEKVFMQLFSVK 110

Query: 70  EG-ENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPL 128
           +G E LLKACQCY+STT+GP+AGLLFIST+KVAFCS+RS+K YSS G LIR+HYKV+IPL
Sbjct: 111 DGGEKLLKACQCYISTTSGPLAGLLFISTDKVAFCSDRSIKAYSSKGHLIRIHYKVVIPL 170

Query: 129 SKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
            KI+ ++Q  ++KK S+KYIE+ TVD FDFWFM
Sbjct: 171 EKIRSINQSQHVKKPSQKYIEIVTVDNFDFWFM 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544121|ref|XP_002513123.1| conserved hypothetical protein [Ricinus communis] gi|223548134|gb|EEF49626.1| conserved hypothetical protein [Ricinus communis]

 Score =  235 bits (599), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 135/152 (88%)

Query: 10  VLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVK 69
           VLKRM+KLGKKA+ FA G++EHV+L  KITET+KGKLSLGA+I+QVGGV++I++QLF+VK
Sbjct: 55  VLKRMNKLGKKADKFAHGIREHVKLGTKITETLKGKLSLGARILQVGGVKKIYRQLFNVK 114

Query: 70  EGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS 129
           EGE LLKACQCYLSTTAGPIAGLLFIS++K+AFCSERS+K  S  G+++R+HYKV+IPL 
Sbjct: 115 EGERLLKACQCYLSTTAGPIAGLLFISSDKLAFCSERSIKLSSPEGKMVRIHYKVVIPLK 174

Query: 130 KIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           KIK  +Q  N+KK S+K+IE+ TVD FDFWFM
Sbjct: 175 KIKIANQSENVKKPSQKFIEIVTVDDFDFWFM 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106033|ref|XP_002333733.1| predicted protein [Populus trichocarpa] gi|222838390|gb|EEE76755.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 132/152 (86%)

Query: 10  VLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVK 69
           +LK M+KLGKKA+NFA GV+EHVRL PKI+ETVKGKLSLGAKI+QVGGVE+IFKQLF V 
Sbjct: 49  MLKMMNKLGKKADNFANGVREHVRLGPKISETVKGKLSLGAKILQVGGVEKIFKQLFVVS 108

Query: 70  EGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS 129
           E E LLKA QCYLSTTAGPIAGLLF+ST KVAFCSERS+K  S SG+ +RVHYKVL+PL 
Sbjct: 109 EDEKLLKASQCYLSTTAGPIAGLLFVSTEKVAFCSERSIKISSPSGKSVRVHYKVLVPLK 168

Query: 130 KIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           KIK ++Q  N+KK S+KY+E+ TVD F+FWFM
Sbjct: 169 KIKMLNQSENVKKPSQKYLELVTVDDFEFWFM 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575247|ref|XP_003555753.1| PREDICTED: GEM-like protein 4-like [Glycine max]

 Score =  234 bits (597), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 133/152 (87%)

Query: 10  VLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVK 69
           VL RM+KLG+K N FATG+KEHV+L  KIT+TVKGKLSLGA+I+QVGGV+++F QLFSVK
Sbjct: 52  VLTRMNKLGRKTNIFATGLKEHVKLGQKITDTVKGKLSLGARILQVGGVKKVFMQLFSVK 111

Query: 70  EGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS 129
           +GE LLKA QCYLSTT+GP+AGLLFIST+KVAFCSERS+K YSS G LIR+HYKV+IPL 
Sbjct: 112 DGEKLLKASQCYLSTTSGPLAGLLFISTDKVAFCSERSIKAYSSKGHLIRIHYKVVIPLE 171

Query: 130 KIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           KI+ ++Q  ++KK S KYIE+ TVD FDFWFM
Sbjct: 172 KIRSINQSQHVKKPSPKYIEIVTVDDFDFWFM 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093965|ref|XP_002310054.1| predicted protein [Populus trichocarpa] gi|118489337|gb|ABK96473.1| unknown [Populus trichocarpa x Populus deltoides] gi|222852957|gb|EEE90504.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 130/152 (85%)

Query: 10  VLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVK 69
           +LKRM+KLGKKA+ FA G++EH+RL  KITET+ GKLSLGA+I+QVGGV+++F+QLFSV 
Sbjct: 54  MLKRMNKLGKKADKFAHGIREHMRLGTKITETLVGKLSLGARILQVGGVKKVFRQLFSVS 113

Query: 70  EGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS 129
           EGE LL+ CQCYLSTTAGPIAGLLFIST K+AFCSERS+K  S  G+L+R+HYKV++PL 
Sbjct: 114 EGERLLRVCQCYLSTTAGPIAGLLFISTEKLAFCSERSIKLSSPEGKLVRIHYKVVVPLR 173

Query: 130 KIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           KIK  +Q  N KK SEKYIE+ TVD FDFWFM
Sbjct: 174 KIKTANQSENAKKPSEKYIEIVTVDDFDFWFM 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224148499|ref|XP_002336664.1| predicted protein [Populus trichocarpa] gi|222836479|gb|EEE74886.1| predicted protein [Populus trichocarpa]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 133/158 (84%)

Query: 4   PSRHLPVLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFK 63
           P++   +LKRM+KLGKKA+ FA G++EH+RL  KITET+ GKLSLGA+I+QVGGV+++F+
Sbjct: 37  PNKIDSMLKRMNKLGKKADKFAHGIREHMRLGTKITETLVGKLSLGARILQVGGVKKVFR 96

Query: 64  QLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYK 123
           QLFSV EGE LL+ CQCYLSTTAGPIAGLLFIST K+AFCSERS+K  S  G+L+R+HYK
Sbjct: 97  QLFSVSEGERLLRVCQCYLSTTAGPIAGLLFISTEKLAFCSERSIKLSSPEGKLVRIHYK 156

Query: 124 VLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           V++PL KI+  +Q  N KK SEKYIE+ TVD FDFWFM
Sbjct: 157 VVVPLRKIRTANQSENAKKPSEKYIEIVTVDDFDFWFM 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081322|ref|XP_002306370.1| predicted protein [Populus trichocarpa] gi|222855819|gb|EEE93366.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/152 (69%), Positives = 129/152 (84%)

Query: 10  VLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVK 69
           +LKRM+KLGKKA+ FA G++EHV+L  +ITET+KGKLSLGA+IIQVGGV+++F+QLF V 
Sbjct: 54  LLKRMNKLGKKADKFAHGIREHVKLGTRITETLKGKLSLGARIIQVGGVKKVFRQLFGVS 113

Query: 70  EGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS 129
           EGE LLK CQCYLSTTAGPIAGLLF ST K+AFCSERS+K  S  G+L R+HYKV+IPL 
Sbjct: 114 EGERLLKVCQCYLSTTAGPIAGLLFTSTEKIAFCSERSIKLSSPEGKLTRIHYKVVIPLR 173

Query: 130 KIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           K+K  +Q  N+KK +EKYIE+ TVD FDFWFM
Sbjct: 174 KVKTANQSENVKKPTEKYIEIVTVDDFDFWFM 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523782|ref|XP_004168902.1| PREDICTED: GEM-like protein 4-like [Cucumis sativus]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 133/152 (87%)

Query: 10  VLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVK 69
           +L R++KLGK+A++FA GV+EHVRL  KI+ETVKGKLSLGA+I+QVGG+ +IFKQLF+V 
Sbjct: 56  MLSRVNKLGKRADSFAHGVREHVRLGSKISETVKGKLSLGARILQVGGLRKIFKQLFNVG 115

Query: 70  EGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS 129
           +GE LLKA  CYLSTTAGPIAGLLFISTNK+AFCS+RS+K  S SGELIR HYKV+IP+ 
Sbjct: 116 DGEKLLKAVHCYLSTTAGPIAGLLFISTNKIAFCSDRSIKVSSPSGELIRFHYKVVIPVG 175

Query: 130 KIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
           KI+R++Q  N+KK S+KY+E+ TVD FDFWFM
Sbjct: 176 KIERINQSENVKKPSQKYMEIVTVDNFDFWFM 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.888	0.644	0.678	1.4e-48
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.931	0.684	0.649	8.8e-47
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.956	0.733	0.593	1.2e-44
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.950	0.562	0.411	3.4e-29
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.931	0.643	0.384	7.1e-29
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.925	0.498	0.386	8.2e-28
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.881	0.548	0.370	3.2e-26

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 97/143 (67%), Positives = 116/143 (81%)

Query:    19 KKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKAC 78
             KK + F  GV++  ++ PK+TETVK KLSLGA+I+QVGG+E+IFK+LF V EGE L K  
Sbjct:    54 KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMY 113

Query:    79 QCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRV 138
             QCYLSTTAGPIAGLLFIS+ K+AFCSERS+K  S  G++IRVHYKV IPL KI RV+Q  
Sbjct:   114 QCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQ 173

Query:   139 NMKKQSEKYIEVYTVDGFDFWFM 161
             N KK S+KY+EV TVDGFDFWFM
Sbjct:   174 NTKKPSQKYLEVVTVDGFDFWFM 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 98/151 (64%), Positives = 117/151 (77%)

Query:    12 KRMSKLGKKANN-FATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKE 70
             K  S L KK N+ F  GV++  +L PK+TETVK KLSLGA+I+Q+GG+E+I+K+LF V +
Sbjct:    47 KGKSMLRKKKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSD 106

Query:    71 GENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSK 130
              E L KA QCYLSTTAGPIAGLLFIS+ K+AFCSERS+K  S  GEL RVHYKV IPL K
Sbjct:   107 EEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCK 166

Query:   131 IKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
             I  V+Q  N  K S+KY+EV TVDGFDFWFM
Sbjct:   167 INGVNQSQNTTKPSQKYLEVVTVDGFDFWFM 197

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 92/155 (59%), Positives = 117/155 (75%)

Query:     8 LPVLKRMSKLGKK-ANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLF 66
             +P   ++S L KK  ++F  G ++  +L PK+TETVK KLSLGAKI+Q+GG+E+I+K+LF
Sbjct:    35 IPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLF 94

Query:    67 SVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLI 126
              V + E L KA QCYLSTT G IAGLLFIS+ K+AFCSERS+K  S  G+L RVHYKV I
Sbjct:    95 KVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSI 154

Query:   127 PLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
             PL KI  V+Q  N KK S++Y+EV TVD +DFWFM
Sbjct:   155 PLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFM 189

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 63/153 (41%), Positives = 95/153 (62%)

Query:     9 PVLKRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSV 68
             PV+       +KA   A  +  +++  P ++ET  GK++L AK I  GG E +F+Q+F  
Sbjct:    92 PVIGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGT 151

Query:    69 KEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPL 128
             +  E L K   CYLSTT GP+AG +++S  +VAFCS+R L F + SG+    +Y+V++PL
Sbjct:   152 EPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPL 211

Query:   129 SKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
             + +  V+  V  +   EKYI++ TVDG DFWFM
Sbjct:   212 ANVATVNPVVVKETPPEKYIQLTTVDGHDFWFM 244

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 58/151 (38%), Positives = 97/151 (64%)

Query:    12 KRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEG 71
             K++    +KA     G+K+H++ +P I++    +LS G K+I  GG ER+F++ F V   
Sbjct:    58 KKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAV 117

Query:    72 ENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSG-ELIRVHYKVLIPLSK 130
             E LL +  CY+STT+GP+ G+++IS  ++AFCS+ +++  SS+G   +  +YKV++   K
Sbjct:   118 EKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEK 177

Query:   131 IKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
             I  +    N+ K SE+Y+ + T DGF+FWFM
Sbjct:   178 ISSISSSTNVLKPSERYVHMVTRDGFEFWFM 208

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 58/150 (38%), Positives = 93/150 (62%)

Query:    12 KRMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEG 71
             KR+++  KK  + A    +H+R AP   +   G+++   K+   GG E+IF+Q F     
Sbjct:   127 KRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPE 186

Query:    72 ENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKI 131
             E LL +  CYLST+AGP+ G+L+IS+ K+A+CS+  L  Y +  +    +YKV+IPL ++
Sbjct:   187 EQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLS-YKNGDQTEWSYYKVVIPLHQL 245

Query:   132 KRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
             K V+   ++   +EKYI+V +VD  +FWFM
Sbjct:   246 KAVNPSASIVNPAEKYIQVISVDNHEFWFM 275

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 53/143 (37%), Positives = 89/143 (62%)

Query:    19 KKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKAC 78
             KKA + A    +H++  P + +    +++ G KI+  GG E++FKQ F     E LLK  
Sbjct:    97 KKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTY 156

Query:    79 QCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRV 138
              CYLST+AGP+ G++++ST+K+AF S+  L  Y    + +  +YKV++P +++K V+   
Sbjct:   157 ACYLSTSAGPVLGVMYLSTHKLAFSSDNPLS-YKEGEQTLWSYYKVVLPANQLKAVNPST 215

Query:   139 NMKKQSEKYIEVYTVDGFDFWFM 161
             +    S+KYI+V ++D  +FWFM
Sbjct:   216 SRVNTSDKYIQVISIDNHEFWFM 238


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       161   0.00074  107 3  11 22  0.49    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.30u 0.09s 16.39t   Elapsed:  00:00:01
  Total cpu time:  16.30u 0.09s 16.39t   Elapsed:  00:00:01
  Start:  Fri May 10 23:34:11 2013   End:  Fri May 10 23:34:12 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FTA0	GEML4_ARATH	No assigned EC number	0.6578	0.9130	0.6621	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	1e-72
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	1e-09
pfam02893	60	pfam02893, GRAM, GRAM domain	5e-07
pfam08498	67	pfam08498, Sterol_MT_C, Sterol methyltransferase C	7e-04
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	0.001

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  213 bits (546), Expect = 1e-72
 Identities = 72/109 (66%), Positives = 87/109 (79%)

Query: 53  IQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYS 112
           +Q GGVE++F+Q F V  GE LLKA QCYLSTTAGP+AG LFIST KVAFCS+R L F S
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 113 SSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161
            SG+L+R +YKV+IPL KIK V+   N+K  SEKYI++ TVDGF+FWFM
Sbjct: 61  PSGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFM 109

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 12/65 (18%)

Query: 70  EGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS 129
           E E L+    CYLS T GP+ G L+IS  ++ F S    K             KV+IPL+
Sbjct: 4   EEEKLIADYSCYLSRT-GPVQGRLYISNYRLCFRSNLPGKL-----------TKVVIPLA 51

Query: 130 KIKRV 134
            I R+
Sbjct: 52  DITRI 56

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 44.2 bits (105), Expect = 5e-07
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 70  EGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLS 129
             E L+    CYL     P+ G L+++ N++ F   RS KF   +         ++IPL+
Sbjct: 3   PEEKLIADYSCYLQRPISPVQGRLYLTNNRLCF---RSDKFGDLT--------VLVIPLA 51

Query: 130 KIKRV 134
            I+RV
Sbjct: 52  DIERV 56

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|149521 pfam08498, Sterol_MT_C, Sterol methyltransferase C-terminal

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 13 RMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLF 66
          R +++G+   +   G  E + LAPK ++ V   L + A+ +  GG +++F  +F
Sbjct: 6  RTTRVGRFITHNMVGALEKIGLAPKGSKKVTDALEVAAEGLVAGGKKKLFTPMF 59

This domain is found to the C-terminus of a methyltransferase domain (pfam08241) in fungal and plant sterol methyltransferases. Length = 67

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 62  FKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVH 121
           F++ F++ E E LL     YL     P+ G L+IS N   F   RSL        L    
Sbjct: 3   FRKHFALPESEKLLAYYYAYLQRVL-PVYGKLYISDNYFCF---RSL--------LPGTR 50

Query: 122 YKVLIPLSKIKRVD 135
            K+++PL  I+ V+
Sbjct: 51  TKMILPLKDIENVE 64

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.47
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.32
PF14470	96	bPH_3: Bacterial PH domain	96.67
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	88.43
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	84.96
PF08498	67	Sterol_MT_C: Sterol methyltransferase C-terminal;	83.65
KOG4347	671	consensus GTPase-activating protein VRP [General f	82.88

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.47  E-value=4.9e-14  Score=95.37  Aligned_cols=66  Identities=33%  Similarity=0.577  Sum_probs=46.1

Q ss_pred             eeeecccCCCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceecc
Q 043931           61 IFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQ  136 (161)
Q Consensus        61 iFkq~F~~~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnp  136 (161)
                      -|++.|...++|+|...|.|+|..+.+|+.|.||||+.+++|+|+.+..-.          ++++|||..|.+|..
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence            489999999999999999999999999999999999999999998665443          789999999999875

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.32  E-value=3.1e-12  Score=84.70  Aligned_cols=59  Identities=39%  Similarity=0.708  Sum_probs=51.4

Q ss_pred             CCCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccc
Q 043931           68 VKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQR  137 (161)
Q Consensus        68 ~~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps  137 (161)
                      ..++|+|...|.|||+ +.+|+.|.||||+.+++|+|+.+-...          .+++|||..|.+|+..
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k~   60 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEKS   60 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEEC
Confidence            4689999999999999 779999999999999999997665432          2899999999998763

>PF14470 bPH_3: Bacterial PH domain

Probab=96.67  E-value=0.016  Score=40.18  Aligned_cols=74  Identities=19%  Similarity=0.216  Sum_probs=57.9

Q ss_pred             CCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceE
Q 043931           69 KEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYI  148 (161)
Q Consensus        69 ~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYI  148 (161)
                      .+||+.+-...|.+-...+.-.|+|+++++||-||+-.++.      .    .....||+++|.+|+-....   -...|
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~------~----~~~~~i~y~~I~~v~~~~g~---~~~~i   68 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG------G----KKFESIPYDDITSVSFKKGI---LGGKI   68 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC------C----ceEEEEEhhheEEEEEEccc---cccEE
Confidence            58999999999998877889999999999999999873221      1    13489999999999987433   33568


Q ss_pred             EEEEeCCc
Q 043931          149 EVYTVDGF  156 (161)
Q Consensus       149 qIvTvD~~  156 (161)
                      .|.| ++.
T Consensus        69 ~i~~-~~~   75 (96)
T PF14470_consen   69 TIET-NGE   75 (96)
T ss_pred             EEEE-CCE
Confidence            8877 443

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=88.43  E-value=1.2  Score=32.05  Aligned_cols=86  Identities=27%  Similarity=0.398  Sum_probs=54.0

Q ss_pred             eeeecceeeeecCCCcceeeEEEeeceeEeeecCccceec-CCC---CeeeeEEEEEEecCCcceeccccccCCCCCceE
Q 043931           73 NLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYS-SSG---ELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYI  148 (161)
Q Consensus        73 kLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~-p~g---~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYI  148 (161)
                      |++-++.|-+=|..+-+.|+|.|++..+.|..|..-.... ...   .....+--..+|+.+|+.|-..--..+  +-=|
T Consensus         1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr--~~Al   78 (106)
T PF14844_consen    1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLR--DTAL   78 (106)
T ss_dssp             --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTE--EEEE
T ss_pred             CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCc--ceEE
Confidence            3456789999999999999999999999999981111100 000   001112225689999999987444333  3448


Q ss_pred             EEEEeCCceeee
Q 043931          149 EVYTVDGFDFWF  160 (161)
Q Consensus       149 qIvTvD~~eFWF  160 (161)
                      ||.+.||.-+.|
T Consensus        79 EiF~~dg~s~f~   90 (106)
T PF14844_consen   79 EIFFSDGRSYFF   90 (106)
T ss_dssp             EEEETTS-EEEE
T ss_pred             EEEEcCCcEEEE
Confidence            999999987765

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=84.96  E-value=3.6  Score=27.06  Aligned_cols=62  Identities=23%  Similarity=0.305  Sum_probs=43.3

Q ss_pred             ceeEeeecCccceecCCCCeeeeEEEEEEecCCcceecccccc----CCCCCceEEEEEeCCceeee
Q 043931           98 NKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNM----KKQSEKYIEVYTVDGFDFWF  160 (161)
Q Consensus        98 ~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~----~~p~eKYIqIvTvD~~eFWF  160 (161)
                      +|.++-.+.-|.+..+..+.....++-+|||..+ .|.+..+.    ..+.+..++|.+.++-.|+|
T Consensus        19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~   84 (104)
T PF00169_consen   19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLF   84 (104)
T ss_dssp             EEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEE
T ss_pred             EEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEE
Confidence            4445555555555554544445567789999999 77776666    37788899999988867766

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []

Probab=83.65  E-value=0.58  Score=33.30  Aligned_cols=53  Identities=34%  Similarity=0.383  Sum_probs=47.3

Q ss_pred             HHHhhhhhhhhhhhhhhhhcccCCChhHHHhhhhccccchhhccCceeeeeec
Q 043931           13 RMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQL   65 (161)
Q Consensus        13 ~~~k~~rKae~~a~~i~~h~k~gp~isdt~~gklslgakil~~GG~ekiFkq~   65 (161)
                      +|++++|..-...=.+.|-+++.|+=+-.+.--|..+|.-|.+||-++||--.
T Consensus         6 r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM   58 (67)
T PF08498_consen    6 RMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM   58 (67)
T ss_pred             eccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence            57788888888888899999999999999999999999999999999998643

; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=82.88  E-value=0.85  Score=44.57  Aligned_cols=61  Identities=28%  Similarity=0.415  Sum_probs=51.0

Q ss_pred             ecccCCCCceeeecceeeeecCCC--cceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceecccc
Q 043931           64 QLFSVKEGENLLKACQCYLSTTAG--PIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRV  138 (161)
Q Consensus        64 q~F~~~~~EkLlka~~CYLSTsaG--PVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~  138 (161)
                      -.|...  |+|.-.-.|=|-|..-  -..|-||+||..++|.||-+=..            .+++||.-|+.|.-..
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~c------------~~~~Pl~~vr~ve~~~   76 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWLC------------SFITPLLAVRSVERLD   76 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcccc------------eEeeehhhhhhhhccC
Confidence            456665  9999999999999766  68999999999999999976443            4899999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	94.97
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	93.59
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	90.09
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	84.78

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=94.97  E-value=0.072  Score=48.75  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=53.2

Q ss_pred             ccCCCCceeeeccee--eeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCC
Q 043931           66 FSVKEGENLLKACQC--YLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQ  143 (161)
Q Consensus        66 F~~~~~EkLlka~~C--YLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p  143 (161)
                      |...|||.++..-.-  |++.-.|++.|+|||++.|+.|.+...        +.   .+.+-|||..|.+|.........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~--------~~---~~~~~iPL~~I~~vek~~~~s~~   75 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFVLDASLGVINRVEKIGGASSR   75 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC--------Cc---cEEEEeeccceEEEEEcCCCCcC
Confidence            567899999865211  556567999999999999999999531        11   24578999888777653221111


Q ss_pred             --CCceEEEEEeCCc
Q 043931          144 --SEKYIEVYTVDGF  156 (161)
Q Consensus       144 --~eKYIqIvTvD~~  156 (161)
                        .--.|+|..-|-.
T Consensus        76 ~~~~~~l~I~CKDfr   90 (528)
T 1zsq_A           76 GENSYGLETVCKDIR   90 (528)
T ss_dssp             STTCSEEEEEETTTE
T ss_pred             CCCCceEEEEccCCe
Confidence              1125888777643

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=93.59  E-value=0.24  Score=46.65  Aligned_cols=99  Identities=16%  Similarity=0.193  Sum_probs=53.9

Q ss_pred             hccccchhhccCceeeeeecccCCCCceeeecce-e-eeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEE
Q 043931           46 LSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQ-C-YLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYK  123 (161)
Q Consensus        46 lslgakil~~GG~ekiFkq~F~~~~~EkLlka~~-C-YLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYK  123 (161)
                      +++.-++|+.|-.. -=.--|...|||.+...-. . |+..-.|++.|+|||++.|+.|.+...        +.   .+.
T Consensus        60 ~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~--------~~---~~~  127 (657)
T 1lw3_A           60 FSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFV  127 (657)
T ss_dssp             ------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEE
T ss_pred             hhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC--------Cc---ceE
Confidence            44444555554321 1112377899999995421 1 455456899999999999999998521        11   245


Q ss_pred             EEEecCCcceeccccccCCCC--CceEEEEEeCCc
Q 043931          124 VLIPLSKIKRVDQRVNMKKQS--EKYIEVYTVDGF  156 (161)
Q Consensus       124 VvIPL~kik~vnps~n~~~p~--eKYIqIvTvD~~  156 (161)
                      +-|||..|..|..........  --.|+|..-|-.
T Consensus       128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDfR  162 (657)
T 1lw3_A          128 LDASLGVINRVEKIGGASSRGENSYGLETVCKDIR  162 (657)
T ss_dssp             EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTTE
T ss_pred             EEecccceEEEEecCCCcccCCCCceEEEEecCCc
Confidence            689998888887533211111  124888777643

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=90.09  E-value=0.42  Score=36.36  Aligned_cols=51  Identities=24%  Similarity=0.296  Sum_probs=37.3

Q ss_pred             CCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceE
Q 043931           86 AGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYI  148 (161)
Q Consensus        86 aGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYI  148 (161)
                      +.--.|.||++|.||.|-.+.. .      .     .-+.|||..|+.+...+..-..+-|++
T Consensus        35 ~~~k~G~l~LTshRli~~d~~~-~------~-----~s~~lpl~~v~~~e~~~~~f~~s~Ki~   85 (140)
T 2hth_B           35 IKFDAGTLLLSTHRLIWRDQKN-H------E-----CCMAILLSQIVFIEEQAAGIGKSAKIV   85 (140)
T ss_dssp             SCCCCEEEEEESSEEEEEETTC-C------S-----CCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred             CCCcCCEEEEecCEEEEecCCC-C------c-----eEEEEEhHHeeeeeeeccccccCceEE
Confidence            4668899999999999965532 1      1     337889999888888776665555554

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=84.78  E-value=0.88  Score=34.91  Aligned_cols=48  Identities=10%  Similarity=0.227  Sum_probs=35.0

Q ss_pred             CCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCC
Q 043931           86 AGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQS  144 (161)
Q Consensus        86 aGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~  144 (161)
                      .+--.|.|||+|.||-|-.+.+-..           .-+.+||..|+.+...+..-.++
T Consensus        48 ~~~k~G~lyLTshRIIyv~~~~~~~-----------~SfslPL~~v~~~e~~~~~fg~s   95 (145)
T 2cay_A           48 LQRQRGRIFLTSQRIIYIDDAKPTQ-----------NSLGLELDDLAYVNYSSGFLTRS   95 (145)
T ss_dssp             TTCSSEEEEEESSEEEEEESSCHHH-----------HCEEEEGGGEEEEEEECSSSSSS
T ss_pred             cCCCccEEEEEcCeEEEecCCCCcc-----------eEEEeEhHheeeeeEEcCccccC
Confidence            5778999999999999975543111           12788888888888776665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	97.32
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	90.64
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	84.22

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00039  Score=50.30  Aligned_cols=79  Identities=19%  Similarity=0.236  Sum_probs=52.3

Q ss_pred             CCCCceeeec--ceeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCC--C
Q 043931           68 VKEGENLLKA--CQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKK--Q  143 (161)
Q Consensus        68 ~~~~EkLlka--~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~--p  143 (161)
                      ..|||.+.-.  -.=|+..-.||+-|+|||++-|+.|-++..       .. .   +.+-|||..|..|........  .
T Consensus         5 llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~-------~~-~---~~~~ipl~~I~~v~k~~~~~~~~~   73 (125)
T d1zsqa1           5 LLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-------DP-P---FVLDASLGVINRVEKIGGASSRGE   73 (125)
T ss_dssp             CCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-------SS-C---EEEEEEGGGEEEEEEECCTTCCST
T ss_pred             cCCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCC-------Cc-c---EEEEeccceeeeeeecccccccCC
Confidence            3578876532  234566678999999999999999976421       11 1   245799999988875433222  1


Q ss_pred             CCceEEEEEeCCce
Q 043931          144 SEKYIEVYTVDGFD  157 (161)
Q Consensus       144 ~eKYIqIvTvD~~e  157 (161)
                      .--.|||..-|---
T Consensus        74 ~~~~L~I~CKDfr~   87 (125)
T d1zsqa1          74 NSYGLETVCKDIRN   87 (125)
T ss_dssp             TCSEEEEEETTTEE
T ss_pred             ccccEEEEeccCeE
Confidence            22369999888543

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.39  Score=33.96  Aligned_cols=58  Identities=14%  Similarity=0.218  Sum_probs=41.9

Q ss_pred             ceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceEEEEEeCCceeee
Q 043931           89 IAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWF  160 (161)
Q Consensus        89 VaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWF  160 (161)
                      +.|+|||++.+|+|..+.+=.            -+|.+++..|+.-..|-  +..+.-=++||.-|+-.|=|
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~~------------~~v~~~~~~I~~~q~Sp--e~s~Kv~Lkiv~~~~~s~~F   77 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKDR------------FTISHMYADIKCQKISP--EGKAKIQLQLVLHAGDTTNF   77 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCSS------------CSEEEETTTEEEEEECC--TTCSSEEEEEEETTSCEEEE
T ss_pred             CCcEEEEEcCeEEEEcCCCCC------------ceEEEEhhhhhceecCC--CCcccceeEEEEeCCCeEEE
Confidence            679999999999997754311            23889999998765543  44455568999888766554

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.22  E-value=0.56  Score=33.72  Aligned_cols=47  Identities=13%  Similarity=0.284  Sum_probs=31.3

Q ss_pred             ceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCc
Q 043931           89 IAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEK  146 (161)
Q Consensus        89 VaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eK  146 (161)
                      --|.||++|.||-|-.+-.-...+           +.|||..|..+..++.--..+-|
T Consensus        43 ~~G~l~LTshRiI~v~~~~~~~~S-----------~slpL~~i~~~e~~~~~~~ss~K   89 (130)
T d2caya1          43 QRGRIFLTSQRIIYIDDAKPTQNS-----------LGLELDDLAYVNYSSGFLTRSPR   89 (130)
T ss_dssp             SSEEEEEESSEEEEEESSCHHHHC-----------EEEEGGGEEEEEEECSSSSSSCE
T ss_pred             cCceEEEEeeEEEEecCCCCceeE-----------EEeEhhheeEeEEEccccCCCCe
Confidence            579999999999998654322222           67777777777665554444433