Citrus Sinensis ID: 043938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MKIIDNQFCKLLKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSINYFNLRL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MKIIDNQFCKLLKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLplafffernnrpkltSMVLVQAFSLWLIWWFLGskfiseehSLNICNICRalpnlilnsnssinyfnlrl
Flexible Loop (DISEMBL)
MKIIDNQFCKLlklqglkpVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPnlilnsnssinyfnlrl
Low Complexity Region (SEG)
MKIIDNQFCKLLKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRllsaaafvlplafffERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPnlilnsnssinYFNLRL
Disordered region (IsUnstruct)
**IIDNQFCKLLKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSINYFN***
Disordered Region (DISOPRED)
*************LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSINYFNLRL
Disordered Region (DISEMBL)
MKIIDNQFCKLLKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSINYFNLRL
Disordered Region (DISPRO)
MKIIDNQFCKLLKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSINYFNLRL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIIDNQFCKLLKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSINYFNLRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q9FL41	402	WAT1-related protein At5g	yes	no	0.736	0.243	0.380	1e-13
Q8GXB4	374	WAT1-related protein At1g	no	no	0.511	0.181	0.514	1e-13
F4HVM3	356	WAT1-related protein At1g	no	no	0.466	0.174	0.532	9e-13
Q4PT23	355	WAT1-related protein At1g	no	no	0.526	0.197	0.542	2e-12
Q9FNA5	377	WAT1-related protein At5g	no	no	0.781	0.275	0.368	1e-11
Q9LXX8	377	WAT1-related protein At3g	no	no	0.789	0.278	0.375	2e-11
F4IJ08	394	WAT1-related protein At2g	no	no	0.759	0.256	0.361	7e-10
O80638	374	WAT1-related protein At2g	no	no	0.774	0.275	0.309	1e-09
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.766	0.268	0.311	4e-09
F4HZQ7	389	WAT1-related protein At1g	no	no	0.872	0.298	0.312	5e-09

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 7/105 (6%)

Query: 18  KPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKL 77
           KP   M+ +Q  YAGMNI+ K++ + GM+  VLV YR   A A + P AFFFER  +PK+
Sbjct: 17  KPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKI 76

Query: 78  TSMVLVQAFSLWLI-------WWFLGSKFISEEHSLNICNICRAL 115
           T  + +Q F L L+       ++++G K+ S   S  + N+  A+
Sbjct: 77  TFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAM 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 45/68 (66%)

Query: 19 PVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLT 78
          P + MV+VQ  YAGMNI +K+A + GM   +LVAYR + A     P+AFF ER  RPK+T
Sbjct: 8  PFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKIT 67

Query: 79 SMVLVQAF 86
            +LVQ F
Sbjct: 68 LRILVQVF 75

Arabidopsis thaliana (taxid: 3702)

>sp|F4HVM3|WTR10_ARATH WAT1-related protein At1g68170 OS=Arabidopsis thaliana GN=At1g68170 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 45/62 (72%)

Query: 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPK 76
          +K +  MV+VQ + AG+NI  KLA +DGMN +VLVAYRLL A  F++P+ F F+R  RP+
Sbjct: 1  MKDITAMVVVQIATAGLNIFFKLAMEDGMNPSVLVAYRLLFATLFMIPICFIFQRKKRPE 60

Query: 77 LT 78
           T
Sbjct: 61 FT 62

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PT23|WTR6_ARATH WAT1-related protein At1g25270 OS=Arabidopsis thaliana GN=At1g25270 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 47/70 (67%)

Query: 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPK 76
          +K V+ MV VQ  +AGM IL K+  DDG NL VLVAYRL  A  F+LPLA  F+R  RP+
Sbjct: 1  MKSVVAMVAVQFIFAGMFILFKITVDDGTNLKVLVAYRLSFATIFMLPLALIFQRKKRPE 60

Query: 77 LTSMVLVQAF 86
           T  +L+ AF
Sbjct: 61 FTWRLLLLAF 70

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNA5|WTR39_ARATH WAT1-related protein At5g13670 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 10/114 (8%)

Query: 12  LKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFER 71
           +K +  +P + +V +Q  YA M+I+ KLA + GM+  VLVAYR+  A+A + P A   ER
Sbjct: 1   MKFERARPFIAIVFIQCLYALMSIVAKLALNKGMSPHVLVAYRMAVASALITPFALILER 60

Query: 72  NNRPKLTSMVLVQAFSLWLI-------WWFLGSKFISEEHSLNICNICRALPNL 118
           N RPKLT  +L+Q   L L         ++ G K  +   +  +CN   ALP +
Sbjct: 61  NTRPKLTFKILLQIAILSLFEPVVEQNLYYSGMKLTTATFTSALCN---ALPAM 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXX8|WTR27_ARATH WAT1-related protein At3g56620 OS=Arabidopsis thaliana GN=At3g56620 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 15  QGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNR 74
           +  KP   MV +Q  YAGMN++ K+  D GM+  VLVAYR   A A + P A   ER  R
Sbjct: 7   ESAKPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query: 75  PKLTSMVLVQAFSLWLIW-------WFLGSKFISEEHSLNICNICRALPNLI 119
           PK+T  + +Q F L L+        ++ G K  S   +  + NI  AL  +I
Sbjct: 67  PKMTFPIFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFII 118

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 15  QGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNR 74
           +  KP   MV +Q  YAGMN++ K   D GM+  VLVAYR   A A + P A   ER  R
Sbjct: 7   ESAKPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query: 75  PKLTSMVLVQAFSLWLIW-------WFLGSKFISEEHSLNICNICRAL 115
            K+T  + ++ F L L+        +++G K  S   S  + NI  A+
Sbjct: 67  SKMTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAI 114

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 12  LKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFER 71
           + L+  KP + +V +Q  YAG++I+ K A + GM+  VL +YR + A  F+ P A+F +R
Sbjct: 1   MALKTWKPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDR 60

Query: 72  NNRPKLTSMVLVQAFSLWLI-------WWFLGSKFISEEHSLNICNICRA 114
             RPK+T  +  +   L L+        ++ G K+ S   +  + N+  A
Sbjct: 61  KIRPKMTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPA 110

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 7/109 (6%)

Query: 14  LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN 73
           ++  +P + MV++Q   AGM+IL+K   + GM+  VLV YR   A   + P AF+F++  
Sbjct: 10  MEKARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKV 69

Query: 74  RPKLTSMVLVQAFSLWLI-------WWFLGSKFISEEHSLNICNICRAL 115
           RPK+T M+  +   L L+        ++LG K+ +   +  + N+  A+
Sbjct: 70  RPKMTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAI 118

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%)

Query: 17  LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPK 76
           LKP + M+ +Q  YAGM I+  ++   GMN  VL  YR   A A + P A F ER  RPK
Sbjct: 9   LKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIRPK 68

Query: 77  LTSMVLVQAFSLWLI-------WWFLGSKFISEEHSLNICNICRALPNL--ILNSNSSIN 127
           +T  + +Q   L  I        +++G  + S   +    N+  A+  +  I+    S+N
Sbjct: 69  MTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVN 128

Query: 128 YFNLR 132
           +  +R
Sbjct: 129 FKKVR 133

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
255574054	283	conserved hypothetical protein [Ricinus	0.796	0.374	0.518	9e-19
388500444	224	unknown [Lotus japonicus]	0.789	0.468	0.476	9e-18
224058587	376	mtn21-like protein [Populus trichocarpa]	0.593	0.210	0.555	1e-17
357445679	392	Auxin-induced protein 5NG4 [Medicago tru	0.857	0.290	0.413	9e-17
225431617	361	PREDICTED: auxin-induced protein 5NG4-li	0.796	0.293	0.433	2e-16
359477070	499	PREDICTED: auxin-induced protein 5NG4-li	0.796	0.212	0.452	2e-16
359477066	499	PREDICTED: auxin-induced protein 5NG4-li	0.796	0.212	0.452	2e-16
296088624	392	unnamed protein product [Vitis vinifera]	0.796	0.270	0.452	2e-16
296088626	428	unnamed protein product [Vitis vinifera]	0.796	0.247	0.452	3e-16
359477068	365	PREDICTED: auxin-induced protein 5NG4-li	0.796	0.290	0.424	4e-16

>gi|255574054|ref|XP_002527943.1| conserved hypothetical protein [Ricinus communis] gi|223532647|gb|EEF34432.1| conserved hypothetical protein [Ricinus communis]

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 66/106 (62%)

Query: 14  LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN 73
           L GLKPVM+M++VQ  YAGMNIL KLAA+DGMNL VLV YR + + AF++PLA   ER +
Sbjct: 8   LHGLKPVMLMLVVQIVYAGMNILYKLAANDGMNLRVLVVYRYIFSTAFIVPLALIVERKS 67

Query: 74  RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLI 119
           RPKLT  VL QAF        L      E  +L       A+ NLI
Sbjct: 68  RPKLTWAVLSQAFLCGFFGVLLPQNLYLEGLALTSATFVVAMSNLI 113

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500444|gb|AFK38288.1| unknown [Lotus japonicus]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 65/105 (61%)

Query: 14  LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN 73
           +QGLKP ++MV VQ  +AG+N+L KLA +DGMNL V++AYR + A AF+ PLA   ER N
Sbjct: 8   MQGLKPTLLMVAVQIVFAGVNVLYKLAVNDGMNLRVVIAYRFIFATAFIAPLALILERKN 67

Query: 74  RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNL 118
           R K+T MVL Q+F   L    L   F  E  +L       A+ NL
Sbjct: 68  RSKMTWMVLFQSFLCGLFGGALSQNFYLESLALTSVTFASAMSNL 112

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058587|ref|XP_002299554.1| mtn21-like protein [Populus trichocarpa] gi|222846812|gb|EEE84359.1| mtn21-like protein [Populus trichocarpa]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 2/81 (2%)

Query: 6  NQFCKLLKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPL 65
           + C++L  QGLKP ++MV+VQ ++A +N+L KLAA+DGMNL ++VAYR + A AF+ PL
Sbjct: 2  ERICRVL--QGLKPALLMVLVQVAFAAVNVLYKLAANDGMNLKIIVAYRFIFATAFMAPL 59

Query: 66 AFFFERNNRPKLTSMVLVQAF 86
          AF  ER NR KLT  V++QAF
Sbjct: 60 AFIVERKNRGKLTWTVIIQAF 80

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445679|ref|XP_003593117.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355482165|gb|AES63368.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score = 91.7 bits (226), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 2/116 (1%)

Query: 4   IDNQFCKLLKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVL 63
           + N  C ++  QGLKP ++MV+VQ ++AG+N+L KLA +DGM+L ++VAYR + A AF+ 
Sbjct: 1   MKNNLCNVV--QGLKPTLLMVMVQIAFAGVNVLYKLAVNDGMSLRIVVAYRFIFATAFIA 58

Query: 64  PLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLI 119
           P+AF  ER  R K+T  +L Q+F   L    L   F  +  +L       A+ NLI
Sbjct: 59  PIAFILERKKRAKMTWTILFQSFLCGLFGGSLAQNFYLQALTLTSATFASAMANLI 114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431617|ref|XP_002277147.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 68/106 (64%)

Query: 14  LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN 73
           L+GLKPVMVMVI+Q ++ G+NI  KLA +DGM++ ++VAYR++ AAA ++PLA   E  +
Sbjct: 9   LEGLKPVMVMVIIQIAFGGINIFYKLATNDGMSVKIMVAYRMMFAAASMVPLALILEWKS 68

Query: 74  RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLI 119
           RPKLT  + + +F L +    L     +E  +L       A+ NLI
Sbjct: 69  RPKLTRRIFILSFFLGIFGGSLSHNLYAESLALTSATFVAAMSNLI 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477070|ref|XP_003631933.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 65/106 (61%)

Query: 14  LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN 73
           L+GLKP M MVIVQ  + G+NI+ KLA +DGM++ +LVAYR + A A ++PLA  FE  +
Sbjct: 10  LEGLKPAMTMVIVQIIFGGLNIMYKLARNDGMSMKILVAYRNIFATAIMVPLALIFEGKS 69

Query: 74  RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLI 119
           RPKLT M+ +Q     L    LG    +E  SL       A+ NL+
Sbjct: 70  RPKLTWMIFLQGSLCGLFGGSLGQNLYAESLSLTSATFVAAMTNLV 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477066|ref|XP_002271595.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 65/106 (61%)

Query: 14  LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN 73
           L+GLKP M MVIVQ  + G+NI+ KLA +DGM++ +LVAYR + A A ++PLA  FE  +
Sbjct: 10  LEGLKPAMTMVIVQIIFGGLNIMYKLARNDGMSMKILVAYRNIFATAIMVPLALIFEGKS 69

Query: 74  RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLI 119
           RPKLT M+ +Q     L    LG    +E  SL       A+ NL+
Sbjct: 70  RPKLTWMIFLQGSLCGLFGGSLGQNLYAESLSLTSATFVAAMTNLV 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088624|emb|CBI37615.3| unnamed protein product [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 65/106 (61%)

Query: 14  LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN 73
           L+GLKP M MVIVQ  + G+NI+ KLA +DGM++ +LVAYR + A A ++PLA  FE  +
Sbjct: 10  LEGLKPAMTMVIVQIIFGGLNIMYKLARNDGMSMKILVAYRNIFATAIMVPLALIFEGKS 69

Query: 74  RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLI 119
           RPKLT M+ +Q     L    LG    +E  SL       A+ NL+
Sbjct: 70  RPKLTWMIFLQGSLCGLFGGSLGQNLYAESLSLTSATFVAAMTNLV 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088626|emb|CBI37617.3| unnamed protein product [Vitis vinifera]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 65/106 (61%)

Query: 14  LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN 73
           L+GLKP M MVIVQ  + G+NI+ KLA +DGM++ +LVAYR + A A ++PLA  FE  +
Sbjct: 10  LEGLKPAMTMVIVQIIFGGLNIMYKLARNDGMSMKILVAYRNIFATAIMVPLALIFEGKS 69

Query: 74  RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLI 119
           RPKLT M+ +Q     L    LG    +E  SL       A+ NL+
Sbjct: 70  RPKLTWMIFLQGSLCGLFGGSLGQNLYAESLSLTSATFVAAMTNLV 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477068|ref|XP_003631932.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 64/106 (60%)

Query: 14  LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN 73
           + GLKPV+ MV+VQ S  G+NI+ KL   DGM++ VL+AYR + AAAF +PLA  F+R +
Sbjct: 10  MTGLKPVLAMVVVQVSLGGINIMYKLGKSDGMSMKVLIAYRYIFAAAFTVPLALIFDRKS 69

Query: 74  RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLI 119
           R K+T M+ +Q     L    LG    +E  +L       A+ N+I
Sbjct: 70  RQKMTWMIFLQGSLCGLFGGSLGQNLYAESLTLTSATFAAAMTNII 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.511	0.181	0.441	7.4e-11
TAIR|locus:2102629	377	UMAMIT10 "Usually multiple aci	0.781	0.275	0.348	4.7e-09
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.766	0.253	0.311	8.8e-09
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.781	0.275	0.324	3.5e-08
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.759	0.256	0.324	6.3e-08
TAIR|locus:2032960	355	UMAMIT24 "Usually multiple aci	0.526	0.197	0.428	1.1e-07
TAIR|locus:2199327	356	UMAMIT23 "Usually multiple aci	0.518	0.193	0.391	3.9e-07
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.586	0.200	0.333	5.5e-06
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.766	0.268	0.266	6.8e-06
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.774	0.276	0.263	2.3e-05

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
 Identities = 30/68 (44%), Positives = 38/68 (55%)

Query:    19 PVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRXXXXXXXXXXXXXXXERNNRPKLT 78
             P + MV+VQ  YAGMNI +K+A + GM   +LVAYR               ER  RPK+T
Sbjct:     8 PFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKIT 67

Query:    79 SMVLVQAF 86
               +LVQ F
Sbjct:    68 LRILVQVF 75

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2102629 UMAMIT10 "Usually multiple acids move in and out Transporters 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 39/112 (34%), Positives = 54/112 (48%)

Query:    12 LKL-QGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRXXXXXXXXXXXXXXXE 70
             LK+ +  KP   MV +Q  YAGMN++ K+  D GM+  VLVAYR               E
Sbjct:     3 LKMSESAKPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSE 62

Query:    71 RNNRPKLTSMVLVQAFSLWLIW-------WFLGSKFISEEHSLNICNICRAL 115
             R  RPK+T  + +Q F L L+        ++ G K  S   +  + NI  AL
Sbjct:    63 RKVRPKMTFPIFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPAL 114

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 34/109 (31%), Positives = 54/109 (49%)

Query:    14 LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRXXXXXXXXXXXXXXXERNN 73
             L   KP   M+ +Q  YAGMNI+ K++ + GM+  VLV YR               ER  
Sbjct:    13 LTSSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKA 72

Query:    74 RPKLTSMVLVQAFSLWLI-------WWFLGSKFISEEHSLNICNICRAL 115
             +PK+T  + +Q F L L+       ++++G K+ S   S  + N+  A+
Sbjct:    73 QPKITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAM 121

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 36/111 (32%), Positives = 54/111 (48%)

Query:    12 LKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRXXXXXXXXXXXXXXXER 71
             +K +  +P + +V +Q  YA M+I+ KLA + GM+  VLVAYR               ER
Sbjct:     1 MKFERARPFIAIVFIQCLYALMSIVAKLALNKGMSPHVLVAYRMAVASALITPFALILER 60

Query:    72 NNRPKLTSMVLVQAFSLWLI-------WWFLGSKFISEEHSLNICNICRAL 115
             N RPKLT  +L+Q   L L         ++ G K  +   +  +CN   A+
Sbjct:    61 NTRPKLTFKILLQIAILSLFEPVVEQNLYYSGMKLTTATFTSALCNALPAM 111

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 35/108 (32%), Positives = 50/108 (46%)

Query:    15 QGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRXXXXXXXXXXXXXXXERNNR 74
             +  KP   MV +Q  YAGMN++ K   D GM+  VLVAYR               ER  R
Sbjct:     7 ESAKPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query:    75 PKLTSMVLVQAFSLWLIW-------WFLGSKFISEEHSLNICNICRAL 115
              K+T  + ++ F L L+        +++G K  S   S  + NI  A+
Sbjct:    67 SKMTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAI 114

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2032960 UMAMIT24 "Usually multiple acids move in and out Transporters 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 30/70 (42%), Positives = 38/70 (54%)

Query:    17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRXXXXXXXXXXXXXXXERNNRPK 76
             +K V+ MV VQ  +AGM IL K+  DDG NL VLVAYR               +R  RP+
Sbjct:     1 MKSVVAMVAVQFIFAGMFILFKITVDDGTNLKVLVAYRLSFATIFMLPLALIFQRKKRPE 60

Query:    77 LTSMVLVQAF 86
              T  +L+ AF
Sbjct:    61 FTWRLLLLAF 70

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2199327 UMAMIT23 "Usually multiple acids move in and out Transporters 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query:    17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRXXXXXXXXXXXXXXXERNNRPK 76
             +K +  MV+VQ + AG+NI  KLA +DGMN +VLVAYR               +R  RP+
Sbjct:     1 MKDITAMVVVQIATAGLNIFFKLAMEDGMNPSVLVAYRLLFATLFMIPICFIFQRKKRPE 60

Query:    77 LTSMVLVQA 85
              T  +++ A
Sbjct:    61 FTCRLMLLA 69

GO:0016020 "membrane" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 26/78 (33%), Positives = 36/78 (46%)

Query:    14 LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRXXXXXXXXXXXXXXXERNN 73
             +  LKP + M+ +Q  YAGM I+  ++   GMN  VL  YR               ER  
Sbjct:     6 MNSLKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKI 65

Query:    74 RPKLTSMVLVQAFSLWLI 91
             RPK+T  + +Q   L  I
Sbjct:    66 RPKMTFRIFLQIALLGFI 83

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 29/109 (26%), Positives = 53/109 (48%)

Query:    14 LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRXXXXXXXXXXXXXXXERNN 73
             ++  +P + MV++Q   AGM+IL+K   + GM+  VLV YR               ++  
Sbjct:    10 MEKARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKV 69

Query:    74 RPKLTSMVLVQAFSLWLI-------WWFLGSKFISEEHSLNICNICRAL 115
             RPK+T M+  +   L L+        ++LG K+ +   +  + N+  A+
Sbjct:    70 RPKMTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAI 118

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 29/110 (26%), Positives = 50/110 (45%)

Query:    13 KLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRXXXXXXXXXXXXXXXERN 72
             K+  LKP++ ++ +Q  YAGM I+  ++   GMN  +L  YR               ER 
Sbjct:     5 KMDKLKPIIAIISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERK 64

Query:    73 NRPKLTSMVLVQAFSLWLI-------WWFLGSKFISEEHSLNICNICRAL 115
              RPK+T  + ++  +L  +        +++G K  S  +S    N   A+
Sbjct:    65 IRPKMTWPLFLRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAI 114

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	2e-04

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 23  MVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNR-PKLTSMV 81
           M+  +TS  G++ L K+A   G+N+   + Y  L A+  +LP  FF  R+   P L+  +
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI 77

Query: 82  LVQA------FSLWLIWWFLGSKFISEEHSLNICNICRAL 115
           L +        S+++I  ++G ++ +   +  I NI  AL
Sbjct: 78  LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPAL 117

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
PLN00411	358	nodulin MtN21 family protein; Provisional	99.83
PRK11272	292	putative DMT superfamily transporter inner membran	99.43
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.39
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.34
PRK11689	295	aromatic amino acid exporter; Provisional	99.34
PRK15430	296	putative chloramphenical resistance permease RarD;	99.32
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.22
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.18
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.17
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.88
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.83
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.71
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.53
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.48
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.24
PRK11272	292	putative DMT superfamily transporter inner membran	98.07
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.05
COG2510	140	Predicted membrane protein [Function unknown]	98.04
PRK11689	295	aromatic amino acid exporter; Provisional	97.84
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.78
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.66
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.59
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.55
PLN00411	358	nodulin MtN21 family protein; Provisional	97.54
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.35
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.04
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.86
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.71
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.53
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.43
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.85
PRK15430	296	putative chloramphenical resistance permease RarD;	95.76
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	95.0
COG2962	293	RarD Predicted permeases [General function predict	94.72
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	92.96
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	91.97
KOG4510	346	consensus Permease of the drug/metabolite transpor	90.51
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	82.88
KOG3912	372	consensus Predicted integral membrane protein [Gen	80.79

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.83  E-value=7.4e-20  Score=149.75  Aligned_cols=115  Identities=20%  Similarity=0.202  Sum_probs=103.9

Q ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCccchHHHHHHHHHHHH
Q 043938           13 KLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERN-NRPKLTSMVLVQAFSLWLI   91 (133)
Q Consensus        13 ~~~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~-~~~~l~~~~~~~l~llgl~   91 (133)
                      ..++.++|+.|+.+|+.++|..++.|.++++|++|+.++++|+.+|+++++|+++.++|+ ++|+.+++++.+++++|++
T Consensus         8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~   87 (358)
T PLN00411          8 WRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFL   87 (358)
T ss_pred             hhhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence            556789999999999999999999999999999999999999999999999998876653 3455567899999999999


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938           92 WWFLGSKFISEEHSLNICNICRALPNLILNSNSSINY  128 (133)
Q Consensus        92 Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~  128 (133)
                      | +.++.+++.|++||||+++|++.++.|++++=+..
T Consensus        88 g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~  123 (358)
T PLN00411         88 G-SMYVITGYIGIEYSNPTLASAISNITPALTFILAI  123 (358)
T ss_pred             H-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHH
Confidence            9 68889999999999999999999999999987654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.43  E-value=2.9e-12  Score=101.47  Aligned_cols=104  Identities=10%  Similarity=0.120  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHH
Q 043938           20 VMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKF   99 (133)
Q Consensus        20 ~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l   99 (133)
                      .+.++.+.++||.++++.|.+.+ ++||..++++|+.+|+++++++...+ |++.+  +++++.+...+|.++...++.+
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~-~~~~~--~~~~~~~~~~~g~~~~~~~~~~   85 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR-GHPLP--TLRQWLNAALIGLLLLAVGNGM   85 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh-CCCCC--cHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999876 69999999999999999998876543 32222  4678888899999988788999


Q ss_pred             HHHHh-hhchHHHHHHHhhhhhhhhcccc
Q 043938          100 ISEEH-SLNICNICRALPNLILNSNSSIN  127 (133)
Q Consensus       100 ~~~gL-~~Tsa~nas~i~~l~P~~~~~~~  127 (133)
                      ++.|. +++++++++++..+.|+++.-+.
T Consensus        86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla  114 (292)
T PRK11272         86 VTVAEHQNVPSGIAAVVVATVPLFTLCFS  114 (292)
T ss_pred             HHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence            99999 99999999999999999987443

>TIGR00688 rarD rarD protein

Probab=99.39  E-value=5e-12  Score=97.94  Aligned_cols=108  Identities=9%  Similarity=0.003  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc-----cCCccchHH-HHHHHHHHHH
Q 043938           18 KPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERN-----NRPKLTSMV-LVQAFSLWLI   91 (133)
Q Consensus        18 ~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~-----~~~~l~~~~-~~~l~llgl~   91 (133)
                      |++..++++.++||.+.+++|. .+ ++||.+++++|.++|++++.++...++|+     +.++.++++ +..+.+.|.+
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5778899999999999999997 44 49999999999999999888765433221     111112222 3345555555


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938           92 WWFLGSKFISEEHSLNICNICRALPNLILNSNSSINY  128 (133)
Q Consensus        92 Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~  128 (133)
                       ...++.+++.|++++++++++++..+.|+++.=+..
T Consensus        80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~  115 (256)
T TIGR00688        80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGR  115 (256)
T ss_pred             -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence             568999999999999999999999999999876544

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.34  E-value=2e-11  Score=96.85  Aligned_cols=107  Identities=11%  Similarity=-0.063  Sum_probs=89.7

Q ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHH
Q 043938           14 LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWW   93 (133)
Q Consensus        14 ~~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv   93 (133)
                      ..+.+++..++++.+.|+++.+++|.+.++ +||..++++|+++|+++++++...  ++.  +.+++++...+..|++. 
T Consensus         8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~~--~~~~~~~~~~~~~g~~~-   81 (293)
T PRK10532          8 LPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WRL--RFAKEQRLPLLFYGVSL-   81 (293)
T ss_pred             cccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hhc--cCCHHHHHHHHHHHHHH-
Confidence            345788999999999999999999999876 999999999999999998876422  221  23567888888888875 


Q ss_pred             HHHHHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938           94 FLGSKFISEEHSLNICNICRALPNLILNSNSSI  126 (133)
Q Consensus        94 ~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~  126 (133)
                      ...+.++|.|++|++++.++++..+.|+++.-.
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll  114 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALF  114 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999998643

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.34  E-value=1.4e-11  Score=97.82  Aligned_cols=104  Identities=9%  Similarity=-0.057  Sum_probs=81.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHH
Q 043938           16 GLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFL   95 (133)
Q Consensus        16 ~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~   95 (133)
                      +.+.++.++.+.++||+++++.|.++++ +||+.+.++|+.+|++++.++.  . +   |+.++ +.++..+.|.++...
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~-~---~~~~~-~~~~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--G-F---PRLRQ-FPKRYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--c-c---ccccc-ccHHHHHHHhHHHHH
Confidence            4567888999999999999999998865 9999999999999999988763  1 1   12222 223345667778889


Q ss_pred             HHHHHHHHhhh----chHHHHHHHhhhhhhhhcccc
Q 043938           96 GSKFISEEHSL----NICNICRALPNLILNSNSSIN  127 (133)
Q Consensus        96 ~q~l~~~gL~~----Tsa~nas~i~~l~P~~~~~~~  127 (133)
                      ++.+++.|++|    +++++++++..+.|+++.=+-
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~  109 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFA  109 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHH
Confidence            99999998865    578899999999999886543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.32  E-value=1.7e-11  Score=97.36  Aligned_cols=109  Identities=8%  Similarity=-0.100  Sum_probs=85.6

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccC--Ccc-chHHHHHHHHHHHH
Q 043938           15 QGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNR--PKL-TSMVLVQAFSLWLI   91 (133)
Q Consensus        15 ~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~--~~l-~~~~~~~l~llgl~   91 (133)
                      ++.++++.++++.++||.+.+.+|.. + ++||..+.++|.+++++++.++.+.++++..  ++. +++++. ....+.+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   81 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAV   81 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHH
Confidence            44678999999999999999999975 4 5999999999999999988887654321110  001 233332 3447778


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938           92 WWFLGSKFISEEHSLNICNICRALPNLILNSNSSI  126 (133)
Q Consensus        92 Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~  126 (133)
                      +...++.++|+|++++++++++++..+.|+++.=.
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~  116 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVL  116 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999998644

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.22  E-value=9.7e-11  Score=90.10  Aligned_cols=91  Identities=15%  Similarity=0.005  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 043938           30 YAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNIC  109 (133)
Q Consensus        30 wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa  109 (133)
                      ||.+++.+|.+++++.||....++|.+.+.+++.|+...  |   +  +++++.+....|.++..+++.++|.|++|+++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~---~--~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R---P--PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c---c--CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999999888999999999999999988876432  1   2  34577788999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhcccc
Q 043938          110 NICRALPNLILNSNSSIN  127 (133)
Q Consensus       110 ~nas~i~~l~P~~~~~~~  127 (133)
                      ++++++.++.|+++.-+-
T Consensus        74 ~~~~ii~~~~P~~~~~~~   91 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLS   91 (260)
T ss_pred             hhhHHHHhhhHHHHHHHH
Confidence            999999999999987543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.18  E-value=6.5e-11  Score=80.65  Aligned_cols=99  Identities=16%  Similarity=0.099  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043938           28 TSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLN  107 (133)
Q Consensus        28 ~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~T  107 (133)
                      ++||...+..|...++ +||....++|...+.+ ++++....++++.+..+.+++......|.++....+.+++.|++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4699999999999876 9999999999999998 6776666665543456778888899999998778999999999999


Q ss_pred             hHHHHHHHhhhhhhhhccccc
Q 043938          108 ICNICRALPNLILNSNSSINY  128 (133)
Q Consensus       108 sa~nas~i~~l~P~~~~~~~~  128 (133)
                      +++.++.+.++.|+++.-.-+
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~   99 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGW   99 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999876544

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.17  E-value=4.4e-10  Score=89.24  Aligned_cols=100  Identities=12%  Similarity=0.066  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHH
Q 043938           20 VMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKF   99 (133)
Q Consensus        20 ~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l   99 (133)
                      .+..+++.++||.+++++|.++++ +||..++++|+.+|++++.++..   +++   .+   +..++..|+.+...+..+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~~---~~~---~~---~~~~~~~g~~~~~~~~~~   75 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFVA---RPK---VP---LNLLLGYGLTISFGQFAF   75 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhc---CCC---Cc---hHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999865 99999999999999887766531   211   11   223555567666677778


Q ss_pred             HHHHhhhc-hHHHHHHHhhhhhhhhcccccc
Q 043938          100 ISEEHSLN-ICNICRALPNLILNSNSSINYF  129 (133)
Q Consensus       100 ~~~gL~~T-sa~nas~i~~l~P~~~~~~~~~  129 (133)
                      +|.+++|+ ++++++++.++.|+++.=+.++
T Consensus        76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~  106 (299)
T PRK11453         76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAF  106 (299)
T ss_pred             HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHH
Confidence            89999985 7899999999999998755443

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.88  E-value=5.4e-08  Score=77.13  Aligned_cols=97  Identities=13%  Similarity=0.035  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 043938           31 AGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICN  110 (133)
Q Consensus        31 gg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa~  110 (133)
                      .+..+.-|.++++--+|..+++.|+.++++.+.+. +....+++++.+++|+.+++.+|+++ ..++.+.+.|++|||++
T Consensus        15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s   92 (302)
T TIGR00817        15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS   92 (302)
T ss_pred             HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence            44556789999865789999999999998876654 21122223456788999999999998 57889999999999999


Q ss_pred             HHHHHhhhhhhhhcccccc
Q 043938          111 ICRALPNLILNSNSSINYF  129 (133)
Q Consensus       111 nas~i~~l~P~~~~~~~~~  129 (133)
                      +++++.++.|+++.-+.++
T Consensus        93 ~~~li~~~~Pv~~~ll~~~  111 (302)
T TIGR00817        93 FTHTIKAMEPFFSVVLSAF  111 (302)
T ss_pred             HHHHHHhcchHHHHHHHHH
Confidence            9999999999998766543

specificities overlap.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.83  E-value=1e-07  Score=73.19  Aligned_cols=111  Identities=18%  Similarity=0.081  Sum_probs=91.3

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHH
Q 043938           15 QGLKPVMVMVIVQTSYAGMNILNKLAADDGMN--LAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIW   92 (133)
Q Consensus        15 ~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~--P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~G   92 (133)
                      ...+++...+++.++|+...+..|...++ .+  +..+..+|..++.+++.|+.+..+++.  ..+.+++..+..+|.++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPNP--QALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHHH
Confidence            34578889999999999999999998754 56  455666789999999999877654332  23567888888899998


Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938           93 WFLGSKFISEEHSLNICNICRALPNLILNSNSSINY  128 (133)
Q Consensus        93 v~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~  128 (133)
                      ....+.+++.++++++++.++.+..+.|+++.-..+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~  237 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGL  237 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999999876654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.71  E-value=3.5e-07  Score=74.62  Aligned_cols=96  Identities=13%  Similarity=0.030  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhhhhccCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043938           31 AGMNILNKLAADDGMN-LAVLVAYRLLSAAAFVLPLAFFFERNNRPKL--TSMVLVQAFSLWLIWWFLGSKFISEEHSLN  107 (133)
Q Consensus        31 gg~~i~~K~al~~g~~-P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l--~~~~~~~l~llgl~Gv~~~q~l~~~gL~~T  107 (133)
                      ....+..|.++++ +| |..++.+|+++++++...+. ....+++|+.  .++++..++.+|++|...+. ..+.|++++
T Consensus        62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~-~~~~sl~~~  138 (350)
T PTZ00343         62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYW-ATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHF-GAVISMGLG  138 (350)
T ss_pred             HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc
Confidence            3456778999876 99 99999999999987654442 2212223444  24578899999999987654 467999999


Q ss_pred             hHHHHHHHhhhhhhhhcccccc
Q 043938          108 ICNICRALPNLILNSNSSINYF  129 (133)
Q Consensus       108 sa~nas~i~~l~P~~~~~~~~~  129 (133)
                      ++++++++-++.|++|.-+.++
T Consensus       139 svs~~~iika~~Pvft~lls~~  160 (350)
T PTZ00343        139 AVSFTHVVKAAEPVFTALLSIL  160 (350)
T ss_pred             cHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999877654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.53  E-value=2.8e-06  Score=65.16  Aligned_cols=111  Identities=18%  Similarity=0.119  Sum_probs=84.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHH
Q 043938           16 GLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFL   95 (133)
Q Consensus        16 ~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~   95 (133)
                      .......++...+.|+.+....|...++..++....+.|+..+.+++.+.......+.++  ..+++.+..+.+.++...
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   82 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRP--ALRPWLLLLLLALLGLAL   82 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccc--cccchHHHHHHHHHHHHH
Confidence            345566777788999999999998876447777777889999998855443221111111  222355678888888889


Q ss_pred             HHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938           96 GSKFISEEHSLNICNICRALPNLILNSNSSINY  128 (133)
Q Consensus        96 ~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~  128 (133)
                      ++.+++.+++++++..++++..+.|.++.-...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~  115 (292)
T COG0697          83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAV  115 (292)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987763

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.48  E-value=2.1e-06  Score=67.50  Aligned_cols=104  Identities=12%  Similarity=0.077  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhh-hccCCccchHHHHHHHHHHHHHHHHHHH
Q 043938           20 VMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFE-RNNRPKLTSMVLVQAFSLWLIWWFLGSK   98 (133)
Q Consensus        20 ~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~-r~~~~~l~~~~~~~l~llgl~Gv~~~q~   98 (133)
                      ....+.+.++|+...+..|...++ -++.  .+++...+++++.|+...+. ++.+++.+ ++++...+.+.++...++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLP-ATFWLLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcc-hhhHHHHHHHHHHHHHHHH
Confidence            356678899999999999965554 3443  58888888888888876542 22333333 3455566667777789999


Q ss_pred             HHHHHhhhchHHHHHHHhhhhhhhhcccc
Q 043938           99 FISEEHSLNICNICRALPNLILNSNSSIN  127 (133)
Q Consensus        99 l~~~gL~~Tsa~nas~i~~l~P~~~~~~~  127 (133)
                      +++.|++++++++++.+..+.|+++.=+-
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~  107 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWA  107 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHH
Confidence            99999999999999999999999885443

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.24  E-value=3.7e-05  Score=60.95  Aligned_cols=106  Identities=10%  Similarity=-0.030  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHH
Q 043938           17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLG   96 (133)
Q Consensus        17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~   96 (133)
                      ..+.+..+++.++|+...+..|...+ +.+|....... .++++++.|+....+.  .+..+...+..++.+|+++..+.
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~  222 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIGS-LIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP  222 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHH-HHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence            45788899999999999999998865 48888775554 5566777777665432  11223445555678889888888


Q ss_pred             HHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938           97 SKFISEEHSLNICNICRALPNLILNSNSSI  126 (133)
Q Consensus        97 q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~  126 (133)
                      ..+++.|+++.+|+.+|.+..+.|+++.-.
T Consensus       223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~  252 (293)
T PRK10532        223 YSLEMIALTRLPTRTFGTLMSMEPALAAVS  252 (293)
T ss_pred             HHHHHHHHHhcChhHHHHHHHhHHHHHHHH
Confidence            889999999999999999999999987543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.07  E-value=0.00011  Score=58.09  Aligned_cols=108  Identities=8%  Similarity=-0.115  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHH
Q 043938           17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLG   96 (133)
Q Consensus        17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~   96 (133)
                      ..+.+..+++.++|+...+..|..- . -++.....+...++++++.++....+.......+.++|..+..+|+.|...-
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~  226 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA  226 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            4578888899999999999999763 2 2355667888889988888877654322111124467888889999988788


Q ss_pred             HHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938           97 SKFISEEHSLNICNICRALPNLILNSNSSI  126 (133)
Q Consensus        97 q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~  126 (133)
                      ..+++.++++.++++++.+..+.|+++.-.
T Consensus       227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~  256 (292)
T PRK11272        227 ISAYMYLLRNVRPALATSYAYVNPVVAVLL  256 (292)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999988643

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.05  E-value=6.3e-05  Score=59.59  Aligned_cols=112  Identities=11%  Similarity=0.016  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCc---------cchH-HHHHH
Q 043938           17 LKPVMVMVIVQTSYAGMNILNKLAADD-GMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPK---------LTSM-VLVQA   85 (133)
Q Consensus        17 ~~~~l~lil~~~~wgg~~i~~K~al~~-g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~---------l~~~-~~~~l   85 (133)
                      ..+.+..+++.+.|+...+..|...++ +.||..+..+-...+++.+.|+++..|......         .... .+...
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            457788899999999999999987652 599999999999999999999887654211000         0000 11112


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938           86 FSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSINY  128 (133)
Q Consensus        86 ~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~  128 (133)
                      +..+......++.+.|.++++++|+.+++..++-|+.+.-..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~  266 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSI  266 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeeh
Confidence            2333323334556788899999999999999999999865544

specificities overlap.

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.04  E-value=2.5e-05  Score=56.01  Aligned_cols=101  Identities=9%  Similarity=-0.017  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCC-ccchHHHHHHHHHHHHHHHHHHHH
Q 043938           21 MVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRP-KLTSMVLVQAFSLWLIWWFLGSKF   99 (133)
Q Consensus        21 l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~-~l~~~~~~~l~llgl~Gv~~~q~l   99 (133)
                      ...+++.++||...+++|+.++ |+||..-++.|..+...++..+.+...+.+.+ .+..|.|.-+.+.|+.|. ..-.+
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~g-lswl~   83 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGG-LSWLL   83 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHH-HHHHH
Confidence            4556788999999999999985 69999999999999999888877766554332 356788888889898886 56668


Q ss_pred             HHHHhhhchHHHHHHHhhhhhhhh
Q 043938          100 ISEEHSLNICNICRALPNLILNSN  123 (133)
Q Consensus       100 ~~~gL~~Tsa~nas~i~~l~P~~~  123 (133)
                      ||.++|-..++...-+--+.|+++
T Consensus        84 Yf~ALk~G~as~VvPldk~svvl~  107 (140)
T COG2510          84 YFRALKKGKASRVVPLDKTSVVLA  107 (140)
T ss_pred             HHHHHhcCCcceEEEcccccHHHH
Confidence            999999988887777777777665

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.84  E-value=0.00044  Score=54.84  Aligned_cols=104  Identities=9%  Similarity=-0.076  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHH
Q 043938           17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLG   96 (133)
Q Consensus        17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~   96 (133)
                      ..+.+.++.+.++|+...+..|... ++.+|.....   ..+.+++.+.....+ ......+.+.+..+...|+ +....
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~t~~~  228 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAA-AMGFG  228 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHH-HHHHH
Confidence            4578899999999999999999864 4588876532   334444444333322 1112245566777777675 44567


Q ss_pred             HHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938           97 SKFISEEHSLNICNICRALPNLILNSNSSI  126 (133)
Q Consensus        97 q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~  126 (133)
                      +.+++.++++.+|+.+|.+..+.|++..-.
T Consensus       229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~  258 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATASYFTPVLSAAL  258 (295)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhHHHHHHHH
Confidence            889999999999999999999999986543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.78  E-value=6.4e-05  Score=51.72  Aligned_cols=73  Identities=15%  Similarity=0.039  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhc-c-CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhcc
Q 043938           52 AYRLLSAAAFVLPLAFFFERN-N-RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSS  125 (133)
Q Consensus        52 ~~R~~iA~liL~p~a~~~~r~-~-~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~  125 (133)
                      .+|...+.+++..+...+.|. + .+..+.+++.++...|++|...+..+++.|++++++ ..+++.++.|+++.-
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~l   76 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTAL   76 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHH
Confidence            689999999988877664331 1 122344667777888999887889999999999995 888999999999864

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.66  E-value=0.0021  Score=45.46  Aligned_cols=104  Identities=17%  Similarity=0.046  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccC-C---cc-------chHHH
Q 043938           20 VMVMVIVQTSYAGMNILNKLAADD------GMNLAVLVAYRLLSAAAFVLPLAFFFERNNR-P---KL-------TSMVL   82 (133)
Q Consensus        20 ~l~lil~~~~wgg~~i~~K~al~~------g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~-~---~l-------~~~~~   82 (133)
                      ++..+.+.++.+...+..|..+++      +.+|..+..+-...+++++.|.++..|+.+. +   ..       ..+.+
T Consensus         2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T PF03151_consen    2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI   81 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence            456778889999999999998876      8999999999999999999999888776431 1   01       12345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhc
Q 043938           83 VQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNS  124 (133)
Q Consensus        83 ~~l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~  124 (133)
                      ..++..|+++. .+|...|.-+++|||...++..++=.+.+.
T Consensus        82 ~~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i  122 (153)
T PF03151_consen   82 FLLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVI  122 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHH
Confidence            55666677775 889999999999999999999887655543

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.59  E-value=0.003  Score=50.11  Aligned_cols=109  Identities=13%  Similarity=0.067  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHhhhhhcc-----CCccchHHHHHHHHHH
Q 043938           17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNL--AVLVAYRLLSAAAFVLPLAFFFERNN-----RPKLTSMVLVQAFSLW   89 (133)
Q Consensus        17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P--~~l~~~R~~iA~liL~p~a~~~~r~~-----~~~l~~~~~~~l~llg   89 (133)
                      ..+.+..+++.++|+...+..|...++.-+|  ..+..+-.+++.+.+.+.++..+...     ....+.+.+..++.+|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            3577888999999999999999865432222  33334334444443333333333211     1234557788899999


Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhcc
Q 043938           90 LIWWFLGSKFISEEHSLNICNICRALPNLILNSNSS  125 (133)
Q Consensus        90 l~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~  125 (133)
                      +++...-..+++.++++..|+.++.+..+.|++..-
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~  257 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLA  257 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            998888888999999999999999999999997653

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.55  E-value=0.0033  Score=51.36  Aligned_cols=111  Identities=13%  Similarity=0.089  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCC-----------ccch
Q 043938           17 LKPVMVMVIVQTSYAGMNILNKLAADD------GMNLAVLVAYRLLSAAAFVLPLAFFFERNNRP-----------KLTS   79 (133)
Q Consensus        17 ~~~~l~lil~~~~wgg~~i~~K~al~~------g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~-----------~l~~   79 (133)
                      +.+.+..+++.++|+...+.+|..+++      ..++..+..+-..+++++++|+....|.....           ....
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            457888899999999999999998763      26677777777889999999987755421100           0011


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhcccc
Q 043938           80 MVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSIN  127 (133)
Q Consensus        80 ~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~  127 (133)
                      .......+.+.+...+++.+.|.++++++|..+++..++-|+.+.-.-
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s  320 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSS  320 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhh
Confidence            111222333333445667778889999999999999999999876543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.54  E-value=0.0027  Score=52.35  Aligned_cols=106  Identities=9%  Similarity=-0.056  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCC----ccchHHHHHHHHHHHHHHH
Q 043938           19 PVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRP----KLTSMVLVQAFSLWLIWWF   94 (133)
Q Consensus        19 ~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~----~l~~~~~~~l~llgl~Gv~   94 (133)
                      +.+.++++.+.|+...+..|....+.-++...+++-..++++.+.+.+...++...+    ..... ...++..|+. ..
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t~  267 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-TS  267 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-HH
Confidence            557788899999999999998766533445667777777777666666555542111    11222 2224444543 34


Q ss_pred             HHHHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938           95 LGSKFISEEHSLNICNICRALPNLILNSNSSI  126 (133)
Q Consensus        95 ~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~  126 (133)
                      +...+.++++++..|+.+|...++.|+++.-.
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~ll  299 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVM  299 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHH
Confidence            56668889999999999999999999998644

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.35  E-value=0.0016  Score=51.85  Aligned_cols=94  Identities=13%  Similarity=0.125  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHH---HHH
Q 043938           19 PVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIW---WFL   95 (133)
Q Consensus        19 ~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~G---v~~   95 (133)
                      .++..+++.++||.+.+..|..-  |.++.++.  |..++.+++..+.... |+  |+.   +....+..|++|   ...
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~--~~~---~~~~~~~~g~l~G~~w~i   71 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VL--PEF---WALSIFLVGLLSGAFWAL   71 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hC--Ccc---cccHHHHHHHHHHHHHHh
Confidence            35677888999999999999763  79998875  8888888776655443 21  221   223445555555   667


Q ss_pred             HHHHHHHHhhhchHHHHHHHhh-hhhhh
Q 043938           96 GSKFISEEHSLNICNICRALPN-LILNS  122 (133)
Q Consensus        96 ~q~l~~~gL~~Tsa~nas~i~~-l~P~~  122 (133)
                      .|.+++.+.++++.+.+-.+.+ +.|++
T Consensus        72 g~~~~~~ai~~~gva~a~~i~~~~~~v~   99 (290)
T TIGR00776        72 GQINQFKSMRYMGVSKTMPISTGFQLVG   99 (290)
T ss_pred             hhhhHHHHHHHHhHHHHhHHHHHHHHHH
Confidence            8899999999999999977777 55543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.04  E-value=0.026  Score=43.06  Aligned_cols=107  Identities=15%  Similarity=0.037  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHH
Q 043938           17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVA-YRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFL   95 (133)
Q Consensus        17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~-~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~   95 (133)
                      ..+....+++.+.|+...+..|...  ..++..... +....+.....+.  ..+... .+...+++..+...|+.+...
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLF--FLSGFG-APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHH--Hhcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            4677888999999999999998765  367777776 3333222222232  222111 234567888899999998877


Q ss_pred             HHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938           96 GSKFISEEHSLNICNICRALPNLILNSNSSINY  128 (133)
Q Consensus        96 ~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~  128 (133)
                      -+.+++.+++..+++..+.+..+.|++.....+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  260 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGV  260 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999988776443

>TIGR00688 rarD rarD protein

Probab=96.86  E-value=0.028  Score=43.34  Aligned_cols=96  Identities=10%  Similarity=0.023  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh--hhhccC--Cc-cchHHHHHHHHHHHHHHHHH
Q 043938           22 VMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFF--FERNNR--PK-LTSMVLVQAFSLWLIWWFLG   96 (133)
Q Consensus        22 ~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~--~~r~~~--~~-l~~~~~~~l~llgl~Gv~~~   96 (133)
                      ..+++.++|+...+..|..-++  ++....     .+...+.|+...  ......  +. ...++|..++.+|+.+. ..
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~-i~  221 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT--DLAGFC-----LETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITG-TP  221 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC--CcchHH-----HHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHH-HH
Confidence            4567889999999999976432  222222     122222333211  011111  11 12248888999998854 68


Q ss_pred             HHHHHHHhhhchHHHHHHHhhhhhhhhcc
Q 043938           97 SKFISEEHSLNICNICRALPNLILNSNSS  125 (133)
Q Consensus        97 q~l~~~gL~~Tsa~nas~i~~l~P~~~~~  125 (133)
                      +.++..|+++.+|+.++.+..+.|+++.=
T Consensus       222 ~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~  250 (256)
T TIGR00688       222 LLAFVIAANRLPLNLLGLLQYIGPTIMML  250 (256)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999998753

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.71  E-value=0.031  Score=45.90  Aligned_cols=100  Identities=12%  Similarity=0.099  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhhhh-ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043938           28 TSYAGMNILNKLAADDGMN-LAVLVAYRLLSAAAFVLPLAFFFER-NNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHS  105 (133)
Q Consensus        28 ~~wgg~~i~~K~al~~g~~-P~~l~~~R~~iA~liL~p~a~~~~r-~~~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~  105 (133)
                      ++=.++.+.+....++|.+ |..-.+.-...-.++..|....+++ +++.+..+++|++.+++|++-+ .-+++...|++
T Consensus        23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv-~aN~~~v~a~~  101 (334)
T PF06027_consen   23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV-EANYLVVLAYQ  101 (334)
T ss_pred             HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH-HHHHHHHHHhh
Confidence            4455666666666566777 7766666666656666665444332 2333344578999999999997 56678999999


Q ss_pred             hchHHHHHHHhhhhhhhhccccc
Q 043938          106 LNICNICRALPNLILNSNSSINY  128 (133)
Q Consensus       106 ~Tsa~nas~i~~l~P~~~~~~~~  128 (133)
                      |||.+.+.++..++-.++.-..+
T Consensus       102 yTsvtS~~lL~~~~i~~~~~LS~  124 (334)
T PF06027_consen  102 YTSVTSVQLLDCTSIPFVMILSF  124 (334)
T ss_pred             cccHhHHHhhhhhhhHHHHHHHH
Confidence            99999999998777666654443

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.53  E-value=0.0052  Score=48.24  Aligned_cols=110  Identities=12%  Similarity=-0.090  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHH
Q 043938           17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAV----LVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIW   92 (133)
Q Consensus        17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~----l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~G   92 (133)
                      .++....+++.++|+...+..|...+ +.+|..    ...+...+.++.+.+.....+++ .+......+..+...+.++
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  220 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPYARQILPSATLGGLM  220 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHHH
Confidence            34566778889999999999997643 355532    22223322212222222111211 1111122334455666666


Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938           93 WFLGSKFISEEHSLNICNICRALPNLILNSNSSINY  128 (133)
Q Consensus        93 v~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~  128 (133)
                      ....+.+++.++++.+|+.++....+.|++..-.-+
T Consensus       221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~  256 (281)
T TIGR03340       221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGI  256 (281)
T ss_pred             HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHH
Confidence            667788999999999999999999999998765554

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.43  E-value=0.051  Score=43.38  Aligned_cols=99  Identities=14%  Similarity=-0.010  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHH
Q 043938           19 PVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSK   98 (133)
Q Consensus        19 ~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~   98 (133)
                      |++.+..+.+.--+..-++|..... +.|--.+.+|..++++++.++.  +.+++  +.+++++..+...|..=. ..|.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~--RPwr~--r~~~~~~~~~~~yGvsLg-~MNl   86 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF--RPWRR--RLSKPQRLALLAYGVSLG-GMNL   86 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh--hHHHh--ccChhhhHHHHHHHHHHH-HHHH
Confidence            5666655544433445567777775 9999999999999999998863  33322  346778888888887632 5788


Q ss_pred             HHHHHhhhchHHHHHHHhhhhhhhh
Q 043938           99 FISEEHSLNICNICRALPNLILNSN  123 (133)
Q Consensus        99 l~~~gL~~Tsa~nas~i~~l~P~~~  123 (133)
                      +||.+++.-.=..+-++--+-|..-
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~v  111 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAV  111 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHH
Confidence            9999998887777777776666543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.85  E-value=0.11  Score=41.25  Aligned_cols=99  Identities=11%  Similarity=0.087  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHH
Q 043938           17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRL---LSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWW   93 (133)
Q Consensus        17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~---~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv   93 (133)
                      .++....+++.+.|+...+..|..   +.||...++.-.   .+++.++.+..    ++.+|. ..+......+.|++- 
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~Gi~~-  221 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----ILAKPL-KKYAILLNILPGLMW-  221 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hcccch-HHHHHHHHHHHHHHH-
Confidence            578888899999999999999964   388988844444   44444433321    122332 233444455577774 


Q ss_pred             HHHHHHHHHHhh-hchHHHHHHHhhhhhhhhc
Q 043938           94 FLGSKFISEEHS-LNICNICRALPNLILNSNS  124 (133)
Q Consensus        94 ~~~q~l~~~gL~-~Tsa~nas~i~~l~P~~~~  124 (133)
                      ..-+.+++.|++ +..++.++.+...-|+...
T Consensus       222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~  253 (290)
T TIGR00776       222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIIST  253 (290)
T ss_pred             HHHHHHHHHHcccccchhhHHHHHHHHHHHHH
Confidence            455667889999 9999999999999998765

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=95.76  E-value=0.24  Score=39.23  Aligned_cols=103  Identities=8%  Similarity=-0.040  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHH
Q 043938           21 MVMVIVQTSYAGMNILNKLAADDG-MNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKF   99 (133)
Q Consensus        21 l~lil~~~~wgg~~i~~K~al~~g-~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l   99 (133)
                      ...+++.++|+...+..|...++. .++.....+=..++.+.+.+...... ......+...+..++..|+.+. ..+.+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~t~-i~~~~  229 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSST-SHMGQNPMSLNLLLIAAGIVTT-VPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCc-ccccCCcHHHHHHHHHHHHHHH-HHHHH
Confidence            346677899999999999764321 22233333333333333322211000 0011111223344555565444 67889


Q ss_pred             HHHHhhhchHHHHHHHhhhhhhhhcc
Q 043938          100 ISEEHSLNICNICRALPNLILNSNSS  125 (133)
Q Consensus       100 ~~~gL~~Tsa~nas~i~~l~P~~~~~  125 (133)
                      ++.++++.+|+.+|.+..+.|++..-
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~  255 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFL  255 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998753

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=95.00  E-value=0.39  Score=39.50  Aligned_cols=97  Identities=9%  Similarity=0.031  Sum_probs=65.5

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchH-HHHHHHHHHHHHH
Q 043938           15 QGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSM-VLVQAFSLWLIWW   93 (133)
Q Consensus        15 ~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~-~~~~l~llgl~Gv   93 (133)
                      +..++-++++++++++|..++.-|..+++ .|+..+...==+.++++..+.....||++....++. +...+++...+..
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~l  243 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCL  243 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHH
Confidence            45678899999999999999999998875 788877766666777777777777788655434332 1122222222234


Q ss_pred             HHHHHHHHHHhhhchHHHH
Q 043938           94 FLGSKFISEEHSLNICNIC  112 (133)
Q Consensus        94 ~~~q~l~~~gL~~Tsa~na  112 (133)
                      +.+..+.-..+++|||+..
T Consensus       244 f~~y~l~p~~l~~ssAt~~  262 (334)
T PF06027_consen  244 FLFYSLVPIVLRMSSATFF  262 (334)
T ss_pred             HHHHHHHHHHHHhCcccee
Confidence            4444555678899998743

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=94.72  E-value=0.38  Score=38.89  Aligned_cols=105  Identities=13%  Similarity=0.039  Sum_probs=73.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCcc--chHHHHHHHHHHHHH
Q 043938           16 GLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERN-NRPKL--TSMVLVQAFSLWLIW   92 (133)
Q Consensus        16 ~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~-~~~~l--~~~~~~~l~llgl~G   92 (133)
                      ..++++.-+++.++||......|.. + ..|+.....+|.+-+.+++.......++. +....  +.+.+..+.+.++ =
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-l   81 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-L   81 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-H
Confidence            4578899999999999999999954 4 59999999999999988876655444322 11111  1122222223222 3


Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHhhhhhhhh
Q 043938           93 WFLGSKFISEEHSLNICNICRALPNLILNSN  123 (133)
Q Consensus        93 v~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~  123 (133)
                      +.++-..|.++.+.-...++|+=+-+-|..+
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~  112 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVN  112 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHHHHHHHHH
Confidence            4467778888999999999998777777654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=92.96  E-value=2.3  Score=33.77  Aligned_cols=104  Identities=17%  Similarity=0.045  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHhh--h-hhcc-CCc--cchHHHHHHHHHHHH
Q 043938           19 PVMVMVIVQTSYAGMNILNKLAAD-DGMNLAVLVAYRLLSAAAFVLPLAFF--F-ERNN-RPK--LTSMVLVQAFSLWLI   91 (133)
Q Consensus        19 ~~l~lil~~~~wgg~~i~~K~al~-~g~~P~~l~~~R~~iA~liL~p~a~~--~-~r~~-~~~--l~~~~~~~l~llgl~   91 (133)
                      ++.++++..++.|...+.-+...+ ++.+|....+|-.+.+.++.++....  . |-++ .+.  -..+.+..+++.++.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            888999999999999999999885 58999999999999999988777665  1 1111 100  112345667777787


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHhhhhhhhh
Q 043938           92 WWFLGSKFISEEHSLNICNICRALPNLILNSN  123 (133)
Q Consensus        92 Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~  123 (133)
                      |. ..|.+.+.-.+.++|...+++.++--..+
T Consensus       235 ~~-~g~~~i~~~~~~~~al~~t~v~t~Rk~~s  265 (303)
T PF08449_consen  235 GA-LGQFFIFYLIKKFSALTTTIVTTLRKFLS  265 (303)
T ss_pred             HH-HHHHHHHHHHHhcCchhhhhHHHHHHHHH
Confidence            86 45556667789999999999888765544

; GO: 0055085 transmembrane transport

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=91.97  E-value=2.9  Score=34.18  Aligned_cols=100  Identities=16%  Similarity=0.084  Sum_probs=74.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHH-HHHhhhhhccC----C-ccchHHHHHHH
Q 043938           16 GLKPVMVMVIVQTSYAGMNILNKLAA---DDGMNLAVLVAYRLLSAAAFVL-PLAFFFERNNR----P-KLTSMVLVQAF   86 (133)
Q Consensus        16 ~~~~~l~lil~~~~wgg~~i~~K~al---~~g~~P~~l~~~R~~iA~liL~-p~a~~~~r~~~----~-~l~~~~~~~l~   86 (133)
                      ++.+.+......+..+...+.+|..+   ++.+|++.+..|---+++.+++ |+....|.+..    . ..... ...+.
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence            45677788888889999999999998   3569999999999999999998 98776665332    0 12223 34445


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHHHHHHHhh
Q 043938           87 SLWLIWWFLGSKFISEEHSLNICNICRALPN  117 (133)
Q Consensus        87 llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~  117 (133)
                      +.+.+.. ++|...|.-+..|||..-+....
T Consensus       240 ~~sv~~f-~~Nls~f~~ig~tSalT~~V~g~  269 (316)
T KOG1441|consen  240 LNSVLAF-LLNLSAFLVIGRTSALTYSVAGH  269 (316)
T ss_pred             HHHHHHH-HHHHHHHHHHcccCchhhhhhcc
Confidence            5556664 66778999999999998776553

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=90.51  E-value=0.032  Score=45.03  Aligned_cols=92  Identities=7%  Similarity=-0.044  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043938           28 TSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN-RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSL  106 (133)
Q Consensus        28 ~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~-~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~  106 (133)
                      .++....++.+..++  .+|..+...|.++-.++-.|........- -|+ .+|.  ++++=|+.|.++.. +.|++++|
T Consensus        47 ~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~-g~R~--~LiLRg~mG~tgvm-lmyya~~~  120 (346)
T KOG4510|consen   47 YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPE-GKRK--WLILRGFMGFTGVM-LMYYALMY  120 (346)
T ss_pred             HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCC-CcEE--EEEeehhhhhhHHH-HHHHHHhh
Confidence            666666666666653  79999999998887777777654322111 121 1121  23444555554444 68899999


Q ss_pred             chHHHHHHHhhhhhhhhcc
Q 043938          107 NICNICRALPNLILNSNSS  125 (133)
Q Consensus       107 Tsa~nas~i~~l~P~~~~~  125 (133)
                      -|-+.|++|.-.+|++|+-
T Consensus       121 mslaDA~vItFssPvft~i  139 (346)
T KOG4510|consen  121 MSLADAVVITFSSPVFTII  139 (346)
T ss_pred             cchhheEEEEecChHHHHH
Confidence            9999999999999999864

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=82.88  E-value=18  Score=29.14  Aligned_cols=105  Identities=16%  Similarity=0.015  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHH
Q 043938           17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLG   96 (133)
Q Consensus        17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~   96 (133)
                      -.+....+.+..+|++..+.+|.+-.. .+--.=+.+-+++|+++.+|+..-.-...  -...+....-...|+++...-
T Consensus       147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSalP  223 (292)
T COG5006         147 PVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSALP  223 (292)
T ss_pred             HHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhcccc
Confidence            345667778889999999999988533 44445578899999999999986432211  123345555666777777777


Q ss_pred             HHHHHHHhhhchHHHHHHHhhhhhhhhc
Q 043938           97 SKFISEEHSLNICNICRALPNLILNSNS  124 (133)
Q Consensus        97 q~l~~~gL~~Tsa~nas~i~~l~P~~~~  124 (133)
                      ..+...+|+.-++..-+.+..+-|++-+
T Consensus       224 YsLEmiAL~rlp~~~F~~LlSLePa~aA  251 (292)
T COG5006         224 YSLEMIALRRLPARTFGTLLSLEPALAA  251 (292)
T ss_pred             hHHHHHHHhhCChhHHHHHHHhhHHHHH
Confidence            7788899999999999999999998754

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=80.79  E-value=7.7  Score=31.83  Aligned_cols=81  Identities=14%  Similarity=0.042  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHHHHHHHhhhhhccCCccch-------HH---H-H-HHHHHHHH
Q 043938           31 AGMNILNKLAAD---DGMN----LAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTS-------MV---L-V-QAFSLWLI   91 (133)
Q Consensus        31 gg~~i~~K~al~---~g~~----P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~-------~~---~-~-~l~llgl~   91 (133)
                      +.|.+++|.+=+   +|-|    |+..+..=|+.-.++++.+...+.|.+.+-.+.       ++   + + ..+.=+++
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~   95 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC   95 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence            457888888732   4555    777777777777888888877665543321110       01   1 1 12223444


Q ss_pred             HHHHHHHHHHHHhhhchHHHH
Q 043938           92 WWFLGSKFISEEHSLNICNIC  112 (133)
Q Consensus        92 Gv~~~q~l~~~gL~~Tsa~na  112 (133)
                      -+. -..++|.||.+|||+.-
T Consensus        96 Di~-gsslm~vgL~lTsASsf  115 (372)
T KOG3912|consen   96 DIA-GSSLMYVGLNLTSASSF  115 (372)
T ss_pred             HHh-hhHHHHHHHHHhhHHHH
Confidence            442 34588999999999864

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00