Citrus Sinensis ID: 043942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFLI
Secondary Structure (PSIPRED)
cccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccccccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEcEEEEEEcccccEEEEEEccccEEEEccccccEEEEccccEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccccccccEEEEEEcccccEEEEEcccccEEEEEEccccEEccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEc
Coil and Loop (DISEMBL)
inqgdwaseilghkdsfsslafstdgqllasggfhglvqnrdtssrnlqctvegprggiedstvwmwnadrGAYLNMfsghgsgltcgdfttdgktictgsdnatlsiwnpkggenfHAIRRSSLEFSLNYWMICTSLydgvtclswpgtskylvtgcvdgkvdghIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEfrratkapsysfklffli
Flexible Loop (DISEMBL)
INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQnrdtssrnlqctvegprggiedstVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIaefrratkapsysfklffli
Low Complexity Region (SEG)
INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFLI
Disordered region (IsUnstruct)
*******************LAFSTDGQLLASGGFHGLVQ********LQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL*
Disordered Region (DISOPRED)
INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFLI
Disordered Region (DISEMBL)
INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFLI
Disordered Region (DISPRO)
***GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.800	0.102	0.278	2e-11
P78706	604	Transcriptional repressor	N/A	no	0.587	0.210	0.264	8e-10
Q00808	1356	Vegetative incompatibilit	no	no	0.833	0.132	0.270	9e-10
Q3SZK1	434	Angio-associated migrator	yes	no	0.555	0.276	0.288	6e-09
Q13685	434	Angio-associated migrator	yes	no	0.555	0.276	0.288	8e-09
Q7YR70	435	Angio-associated migrator	yes	no	0.555	0.275	0.288	8e-09
Q5RCG7	434	Angio-associated migrator	yes	no	0.555	0.276	0.288	8e-09
P49695	742	Probable serine/threonine	no	no	0.879	0.256	0.256	9e-09
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.601	0.085	0.294	2e-08
Q2KIG2	334	WD repeat-containing prot	no	no	0.851	0.550	0.223	5e-08

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 35/208 (16%)

Query: 12   GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-----------PRG--- 57
            GH+D+  S++FS DGQ +ASGG    ++   TS   L  T+ G           P G   
Sbjct: 1111 GHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNL 1170

Query: 58   --GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE 115
                 D ++ +W+   G  L   +GH +G+    F+ DG+TI  GS++ T+ +W+ + G+
Sbjct: 1171 ASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDGK 1230

Query: 116  -----NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK----VDGH 166
                 N H    +SL FS           DG T  S        +    DGK    + GH
Sbjct: 1231 LLKTLNGHQDWVNSLSFS----------PDGKTLASASADKTIKLWRIADGKLVKTLKGH 1280

Query: 167  IDAIQSLSVSAIRESLVSVSVDGTARVF 194
             D++  ++ S+  +++ S S D T +++
Sbjct: 1281 NDSVWDVNFSSDGKAIASASRDNTIKLW 1308

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rco-1 PE=4 SV=2

 Score = 63.9 bits (154), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 32/159 (20%)

Query: 58  GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF 117
           G ED  + +W+       N F GH   +   DF+ DG+TI +GS + T+ +W+ + G+N 
Sbjct: 362 GAEDKLIRVWDIQSRTIRNTFHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNT 421

Query: 118 HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------- 163
             +                S+ DGVT ++     +++  G +D  V              
Sbjct: 422 SVL----------------SIEDGVTTVAISPDKQFVAAGSLDKSVRVWDMRGYLAERLE 465

Query: 164 --DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200
             DGH D++ S++ S    +LVS S+D T +++E++  R
Sbjct: 466 GPDGHKDSVYSVAFSPDGRNLVSGSLDKTIKMWELSAPR 504

Represses transcription by RNA polymerase II. May be involved at several stages of conidiation and other growth and development processes. Appears to regulate genes that are expressed in asexual and sexual spore pathways.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 63.9 bits (154), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 27/207 (13%)

Query: 12   GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-----------PRG--- 57
            GH     S+AFS DGQ +ASG     ++  D +S     T+EG           P G   
Sbjct: 923  GHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRV 982

Query: 58   --GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE 115
              G  D T+ +W+   G       GHG  +    F+ DG+ + +GSD+ T+ IW+   G 
Sbjct: 983  ASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT 1042

Query: 116  NFHAIR-----RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAI 170
                +        S+ FS +   + +   D  T   W       V+G     ++GH D++
Sbjct: 1043 CTQTLEGHGGWVQSVVFSPDGQRVASG-SDDHTIKIWDA-----VSGTCTQTLEGHGDSV 1096

Query: 171  QSLSVSAIRESLVSVSVDGTARVFEIA 197
             S++ S   + + S S+DGT ++++ A
Sbjct: 1097 WSVAFSPDGQRVASGSIDGTIKIWDAA 1123

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q3SZK1|AAMP_BOVIN Angio-associated migratory cell protein OS=Bos taurus GN=AAMP PE=2 SV=1

 Score = 60.8 bits (146), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG------ 54
           ++ G+   E  GHKDS +   FS D  L+A+G   GL++     ++    + E       
Sbjct: 121 LSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWM 180

Query: 55  ---PRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL 106
              PR      G  D   WMW    G     F G     TCG    DGK    G ++ T+
Sbjct: 181 EWHPRAPVLLAGTADGNTWMWKVPTGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTI 239

Query: 107 SIWNPKGGENFHAIR 121
            IW+ K G + H ++
Sbjct: 240 RIWDLKQGNSIHVLK 254

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.

Bos taurus (taxid: 9913)

>sp|Q13685|AAMP_HUMAN Angio-associated migratory cell protein OS=Homo sapiens GN=AAMP PE=1 SV=2

 Score = 60.5 bits (145), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG------ 54
           ++ G+   E  GHKDS +   FS D  L+A+G   GL++     ++    + E       
Sbjct: 121 LSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWM 180

Query: 55  ---PRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL 106
              PR      G  D   WMW    G     F G     TCG    DGK    G ++ T+
Sbjct: 181 EWHPRAPVLLAGTADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTI 239

Query: 107 SIWNPKGGENFHAIR 121
            IW+ K G   H ++
Sbjct: 240 RIWDLKQGSPIHVLK 254

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.

Homo sapiens (taxid: 9606)

>sp|Q7YR70|AAMP_CANFA Angio-associated migratory cell protein OS=Canis familiaris GN=AAMP PE=3 SV=1

 Score = 60.5 bits (145), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG------ 54
           ++ G+   E  GHKDS +   FS D  L+A+G   GL++     ++    + E       
Sbjct: 122 LSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWM 181

Query: 55  ---PRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL 106
              PR      G  D   WMW    G     F G     TCG    DGK    G ++ T+
Sbjct: 182 EWHPRAPVLLAGTADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTI 240

Query: 107 SIWNPKGGENFHAIR 121
            IW+ K G   H ++
Sbjct: 241 RIWDLKQGSPIHVLK 255

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.

Canis familiaris (taxid: 9615)

>sp|Q5RCG7|AAMP_PONAB Angio-associated migratory cell protein OS=Pongo abelii GN=AAMP PE=2 SV=2

 Score = 60.5 bits (145), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG------ 54
           ++ G+   E  GHKDS +   FS D  L+A+G   GL++     ++    + E       
Sbjct: 121 LSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWM 180

Query: 55  ---PRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL 106
              PR      G  D   WMW    G     F G     TCG    DGK    G ++ T+
Sbjct: 181 EWHPRAPVLLAGTADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTI 239

Query: 107 SIWNPKGGENFHAIR 121
            IW+ K G   H ++
Sbjct: 240 RIWDLKQGSPIHVLK 254

Plays a role in angiogenesis and cell migration. In smooth muscle cell migration, may act through the RhoA pathway.

Pongo abelii (taxid: 9601)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 28/218 (12%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG------ 54
           +  GD    + GH D   ++AFS DG LLASG     V+  D ++   +   EG      
Sbjct: 488 VASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVL 547

Query: 55  -----PRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                P G     G  D T  +WN   G    +  GH   +    F+ DG  + +GS + 
Sbjct: 548 DIAFSPDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDG 607

Query: 105 TLSIWNPKGGENFHAIRRS-----SLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159
           T+ +W+   G+    ++       SL FS +  M+        T   W      + +G  
Sbjct: 608 TIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHG--SDSTVHLWD-----VASGEA 660

Query: 160 DGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197
               +GH D +++++ S     L S S D T R++++A
Sbjct: 661 LHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVA 698

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 16/146 (10%)

Query: 1    INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG------ 54
            I+ G+     LGH +   S+ FS DG +LASG     V+    SS     T++G      
Sbjct: 1355 ISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414

Query: 55   -----PRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                 P G     G +D TV +WN   G  L    GH + +    F++DG  + +GSD+ 
Sbjct: 1415 SIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDE 1474

Query: 105  TLSIWNPKGGENFHAIRRSSLEFSLN 130
            T+ +W+ K GE    ++   +   +N
Sbjct: 1475 TIKLWDVKTGECIKTLKSEKIYEGMN 1500

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)

Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100

Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160

Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 215

Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 245

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
152926156	408	transducin family protein [Carica papaya	0.759	0.401	0.509	2e-45
449503766	392	PREDICTED: vegetative incompatibility pr	0.782	0.431	0.504	2e-43
449441201	392	PREDICTED: vegetative incompatibility pr	0.782	0.431	0.504	2e-43
224135435	378	predicted protein [Populus trichocarpa]	0.782	0.447	0.5	3e-43
224146457	390	predicted protein [Populus trichocarpa]	0.731	0.405	0.537	4e-43
225444924	391	PREDICTED: angio-associated migratory ce	0.699	0.386	0.547	6e-42
297738669	393	unnamed protein product [Vitis vinifera]	0.699	0.384	0.541	2e-40
147771302	391	hypothetical protein VITISV_007962 [Viti	0.699	0.386	0.530	2e-39
225460494	391	PREDICTED: angio-associated migratory ce	0.699	0.386	0.525	5e-39
7239511	370	Contains similarity to the vegetative in	0.925	0.540	0.410	5e-39

>gi|152926156|gb|ABS32230.1| transducin family protein [Carica papaya] gi|164522082|gb|ABY60781.1| transducin family protein [Carica papaya]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 123/206 (59%), Gaps = 42/206 (20%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
           I +GDW SE+LGHKDS S LAFSTDGQ LASGG  GLVQ  D SS N++C +EGP  GIE
Sbjct: 90  IGRGDWGSELLGHKDSVSCLAFSTDGQFLASGGLDGLVQIWDASSGNIKCALEGPEKGIE 149

Query: 61  ----------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                           D TVWMWNADRGAYLNMFSGHGS +TCGDFT DGKTICTGSD+A
Sbjct: 150 WVRWHPRGHLVLAGSEDCTVWMWNADRGAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 209

Query: 105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD---- 160
           TL IWNP+ GEN H ++                  +G+TCL+    S   +TG  D    
Sbjct: 210 TLRIWNPRSGENIHVVKGHPYH------------TEGLTCLAMSSDSSLALTGSKDSSVH 257

Query: 161 ------GKV----DGHIDAIQSLSVS 176
                 GKV    D H D+++ +  S
Sbjct: 258 IVNIVTGKVVSSLDSHTDSVECVGFS 283

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503766|ref|XP_004162166.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis sativus]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 124/202 (61%), Gaps = 33/202 (16%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
           I +GD+A E+ GHKDS SSLAFS DGQLLASG F G++Q  DTSS NL+CT+EGP GGIE
Sbjct: 92  IGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGIIQIWDTSSGNLKCTLEGPGGGIE 151

Query: 61  ----------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                           DST WMWNADRG YLN+FSGHG+ +TCGDFT DGK ICTGSD+A
Sbjct: 152 WVRWHPRGHLVLAGSEDSTAWMWNADRGIYLNIFSGHGASVTCGDFTPDGKIICTGSDDA 211

Query: 105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVD 164
           T+ IWNP+ GEN H +R                  +G+T L+    S   +TG  DG V 
Sbjct: 212 TMRIWNPRSGENIHVVRGHPYH------------TEGLTSLALTSDSTLALTGSKDGSV- 258

Query: 165 GHIDAIQSLSVSAIRESLVSVS 186
                I +++   +  SLVS S
Sbjct: 259 ----HIVNIATGKVVNSLVSHS 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441201|ref|XP_004138371.1| PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis sativus]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 124/202 (61%), Gaps = 33/202 (16%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
           I +GD+A E+ GHKDS SSLAFS DGQLLASG F G++Q  DTSS NL+CT+EGP GGIE
Sbjct: 92  IGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGIIQIWDTSSGNLKCTLEGPGGGIE 151

Query: 61  ----------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                           DST WMWNADRG YLN+FSGHG+ +TCGDFT DGK ICTGSD+A
Sbjct: 152 WVRWHPRGHLVLAGSEDSTAWMWNADRGIYLNIFSGHGASVTCGDFTPDGKIICTGSDDA 211

Query: 105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVD 164
           T+ IWNP+ GEN H +R                  +G+T L+    S   +TG  DG V 
Sbjct: 212 TMRIWNPRSGENIHVVRGHPYH------------TEGLTSLALTSDSTLALTGSKDGSV- 258

Query: 165 GHIDAIQSLSVSAIRESLVSVS 186
                I +++   +  SLVS S
Sbjct: 259 ----HIVNIATGKVVNSLVSHS 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135435|ref|XP_002327217.1| predicted protein [Populus trichocarpa] gi|222835587|gb|EEE74022.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 122/202 (60%), Gaps = 33/202 (16%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
           I  GDWA+E+ GHK+S SSL FS+DGQLLASGGF G+VQ  D SS NL+C +EGP  GIE
Sbjct: 78  IGLGDWAAELKGHKESVSSLTFSSDGQLLASGGFDGIVQIWDASSGNLKCVLEGPDEGIE 137

Query: 61  ----------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                           D TVWMWNAD+GAYLN F+GH + +TCGDFT DGKTICTGSD+A
Sbjct: 138 WVRWHPKGHLVLAGSEDKTVWMWNADKGAYLNSFAGHEASVTCGDFTPDGKTICTGSDDA 197

Query: 105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVD 164
           +L IWNPK GEN H +R                  DG+TCL+    S   +TG  D  V 
Sbjct: 198 SLRIWNPKSGENIHVVRGHPYH------------TDGLTCLALSSDSTLAITGSKDNSVH 245

Query: 165 GHIDAIQSLSVSAIRESLVSVS 186
                I +++   +  SLVS S
Sbjct: 246 -----IVNITTGRVVSSLVSHS 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146457|ref|XP_002326013.1| predicted protein [Populus trichocarpa] gi|222862888|gb|EEF00395.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 115/188 (61%), Gaps = 30/188 (15%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
           I  GDWASE+ GHKDS S LAFS+DGQLLASGGF GLVQ  D SS N +C +EGP  GIE
Sbjct: 90  IGLGDWASELKGHKDSVSCLAFSSDGQLLASGGFDGLVQIWDASSGNHKCVLEGPDEGIE 149

Query: 61  ----------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                           D +VWMWNADRGAYLN F+GH + +TCGDFT DGKTICTGSD+A
Sbjct: 150 WVRWHPKGHLVLAGSEDKSVWMWNADRGAYLNSFTGHEASVTCGDFTPDGKTICTGSDDA 209

Query: 105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVD 164
           +L IWNPK GEN H +R                  DG+TCL+    S   +TG  D  V 
Sbjct: 210 SLRIWNPKSGENIHVVRGHPYH------------TDGLTCLALSSDSTLAITGSKDNSV- 256

Query: 165 GHIDAIQS 172
            HI  I S
Sbjct: 257 -HIVNITS 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444924|ref|XP_002282186.1| PREDICTED: angio-associated migratory cell protein-like [Vitis vinifera]

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 110/179 (61%), Gaps = 28/179 (15%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
           I  GDWA E+ GHKDS  SL FS DGQLLASG F GLV+  D SS +L+CT+EGP GGIE
Sbjct: 91  ILDGDWAFELGGHKDSVFSLDFSMDGQLLASGSFDGLVKIWDASSGDLKCTLEGPGGGIE 150

Query: 61  ----------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                           D TVWMWNADRGAYLNMFSGH S +TCGDFT DGKTICTGSD+A
Sbjct: 151 WVRWHPRGHVVLAGSEDCTVWMWNADRGAYLNMFSGHASSVTCGDFTPDGKTICTGSDDA 210

Query: 105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163
           TL IWNP  GEN H +R                  +G+TCL+    S   +TG  D  V
Sbjct: 211 TLRIWNPSSGENIHVVRGHPYH------------TEGLTCLAITSDSTLALTGSKDSSV 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738669|emb|CBI27914.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/181 (54%), Positives = 110/181 (60%), Gaps = 30/181 (16%)

Query: 1   INQGDWASEILG--HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG 58
           I  GDWA E+ G  HKDS  SL FS DGQLLASG F GLV+  D SS +L+CT+EGP GG
Sbjct: 91  ILDGDWAFELGGMCHKDSVFSLDFSMDGQLLASGSFDGLVKIWDASSGDLKCTLEGPGGG 150

Query: 59  IE----------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD 102
           IE                D TVWMWNADRGAYLNMFSGH S +TCGDFT DGKTICTGSD
Sbjct: 151 IEWVRWHPRGHVVLAGSEDCTVWMWNADRGAYLNMFSGHASSVTCGDFTPDGKTICTGSD 210

Query: 103 NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK 162
           +ATL IWNP  GEN H +R                  +G+TCL+    S   +TG  D  
Sbjct: 211 DATLRIWNPSSGENIHVVRGHPYH------------TEGLTCLAITSDSTLALTGSKDSS 258

Query: 163 V 163
           V
Sbjct: 259 V 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771302|emb|CAN60774.1| hypothetical protein VITISV_007962 [Vitis vinifera]

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 109/179 (60%), Gaps = 28/179 (15%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
           I  GDWA E+ GHKDS  SL FS DGQLLASG F GLV+  D SS +L+ T+EGP GGIE
Sbjct: 91  IFDGDWAFELGGHKDSVCSLDFSADGQLLASGSFDGLVKIWDASSGDLKGTLEGPGGGIE 150

Query: 61  ----------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                           D TVWMWNADR AYLNMFSGH S +TCG+FT DGKTICTGSD+A
Sbjct: 151 WVRWHPRGHLVLAGSEDCTVWMWNADRSAYLNMFSGHASSVTCGNFTPDGKTICTGSDDA 210

Query: 105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163
           TL IWNP+ GEN H +R                  +G+TCL+    S   +TG  D  V
Sbjct: 211 TLRIWNPRSGENTHVVRGHPYH------------TEGLTCLAITSDSTLALTGSKDSSV 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460494|ref|XP_002274841.1| PREDICTED: angio-associated migratory cell protein [Vitis vinifera] gi|296088039|emb|CBI35322.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 94/179 (52%), Positives = 108/179 (60%), Gaps = 28/179 (15%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
           I  GDWA E+ GHKDS  SL FS DGQLLASG F G V+  D SS +L+ T+EGP GGIE
Sbjct: 91  IFDGDWAFELGGHKDSVCSLDFSADGQLLASGSFDGFVKIWDASSGDLKGTLEGPGGGIE 150

Query: 61  ----------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                           D TVWMWNADR AYLNMFSGH S +TCG+FT DGKTICTGSD+A
Sbjct: 151 WVRWHPRGHLVLAGSEDCTVWMWNADRSAYLNMFSGHASSVTCGNFTPDGKTICTGSDDA 210

Query: 105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163
           TL IWNP+ GEN H +R                  +G+TCL+    S   +TG  D  V
Sbjct: 211 TLRIWNPRSGENTHVVRGHPYH------------TEGLTCLAITSDSTLALTGSKDSSV 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7239511|gb|AAF43237.1|AC012654_21 Contains similarity to the vegetative incompatibility protein HET-E-1 from Podospora ansering gi|3023956; It contains 5 WD40 domains PF|00400 [Arabidopsis thaliana]

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/278 (41%), Positives = 140/278 (50%), Gaps = 78/278 (28%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI- 59
           I  GDWA+E+ GHKDS S LAFS DGQLLASGG  G+VQ  D SS  L+C ++GP  GI 
Sbjct: 91  IGNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFDASSGTLKCVLDGPGAGIE 150

Query: 60  ---------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG---- 100
                          ED ++WMWNAD+ AYLNMFSGH   +TCGDFT DG    T     
Sbjct: 151 WVRWHPRGHIVLAGSEDCSLWMWNADKEAYLNMFSGHNLNVTCGDFTPDGHPYHTEGLTC 210

Query: 101 ---SDNATLSIWNPKGGE---------------NFHAIRRSSLEFS-------------- 128
              + N++L+I   K G                N H      ++FS              
Sbjct: 211 LDINSNSSLAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPLAATGGM 270

Query: 129 ---LNYW--------MICTSLYDGVTCLSWPGTSKYLVTGCVDGKVD------------- 164
              L  W         IC    +GVT L+W GTSKYL TGC +G V              
Sbjct: 271 DKKLIIWDLQHSTPRFICEH-EEGVTSLTWIGTSKYLATGCANGTVSIWDSLLGNCVHTY 329

Query: 165 -GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201
            GH DA+Q++SVS   + +VSVSVD TARVFE +EF+ 
Sbjct: 330 HGHQDAVQAISVSTNTDFIVSVSVDNTARVFESSEFQN 367

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2012971	407	AT1G71840 "AT1G71840" [Arabido	0.791	0.420	0.455	1.1e-37
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.879	0.437	0.280	1.6e-12
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.847	0.134	0.280	2.4e-11
UNIPROTKB|Q3SZK1	434	AAMP "Angio-associated migrato	0.555	0.276	0.303	3.5e-11
ZFIN|ZDB-GENE-040426-2370	420	aamp "angio-associated, migrat	0.541	0.278	0.303	7.3e-11
UNIPROTKB|Q13685	434	AAMP "Angio-associated migrato	0.555	0.276	0.303	9.5e-11
UNIPROTKB|Q5RCG7	434	AAMP "Angio-associated migrato	0.555	0.276	0.303	9.5e-11
UNIPROTKB|Q7YR70	435	AAMP "Angio-associated migrato	0.555	0.275	0.303	9.6e-11
RGD|1306281	435	Aamp "angio-associated, migrat	0.555	0.275	0.296	2.2e-10
ASPGD|ASPL0000006405	1878	AN6960 [Emericella nidulans (t	0.856	0.098	0.271	2.5e-10

TAIR|locus:2012971 AT1G71840 "AT1G71840" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 92/202 (45%), Positives = 116/202 (57%)

Query:     1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
             I  GDWA+E+ GHKDS S LAFS DGQLLASGG  G+VQ  D SS  L+C ++GP  GIE
Sbjct:   100 IGNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFDASSGTLKCVLDGPGAGIE 159

Query:    61 ----------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                             D ++WMWNAD+ AYLNMFSGH   +TCGDFT DGK ICTGSD+A
Sbjct:   160 WVRWHPRGHIVLAGSEDCSLWMWNADKEAYLNMFSGHNLNVTCGDFTPDGKLICTGSDDA 219

Query:   105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVD 164
             +L +WNPK  E+ H ++                  +G+TCL     S   ++G  DG V 
Sbjct:   220 SLIVWNPKTCESIHIVKGHPYHT------------EGLTCLDINSNSSLAISGSKDGSV- 266

Query:   165 GHI-DAIQSLSVSAIRESLVSV 185
              HI + +    VS++     SV
Sbjct:   267 -HIVNIVTGKVVSSLNSHTDSV 287

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 174 (66.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 58/207 (28%), Positives = 96/207 (46%)

Query:    12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTV----WMW 67
             GH  S  S+AFS +GQLLASG     ++  +++S +L+ T+EG    +E         +W
Sbjct:    81 GHSSSVQSVAFSPNGQLLASGSSDTTIKLWNSASDSLKHTMEGHSDRVESVAFSPNGQLW 140

Query:    68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS--- 124
             N   G+  +   GH   +    F+ DG+ + +GS   T+ +W+       H +   S   
Sbjct:   141 NPAIGSLKHTIEGHSDWVLSVAFSPDGQLLASGSAEKTIKLWDSATCGLKHTLGGHSNWV 200

Query:   125 --LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESL 182
               L FS +  ++ +   D    L W   S     G +   ++GH + I+SL+ S   + L
Sbjct:   201 LPLVFSPDGRLLASGSNDATIKL-WDPPS-----GSLKHTLEGHSNKIESLAFSPNGQLL 254

Query:   183 VSVSVDGTARVFEIA--EFRRATKAPS 207
              S S D T ++++ A   FR   K  S
Sbjct:   255 ASGSSDATIKLWDTATGSFRHTLKGHS 281

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 170 (64.9 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 60/214 (28%), Positives = 98/214 (45%)

Query:     4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG--------- 54
             G+    + GH  +  SLAFS DG+LLASG +   +   D+++  L  T EG         
Sbjct:   782 GELLQTLDGHSGTVESLAFSPDGKLLASGSYDNTIDLWDSATGELLQTFEGHPHSIWSVA 841

Query:    55 --PRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLS 107
               P G       +DST+ +W+   G        H   +    F+ DGK + + S ++T+ 
Sbjct:   842 FAPDGKELASASDDSTIKIWDLATGELQQTLDSHSQSVRSVAFSPDGKLLASSSLDSTIK 901

Query:   108 IWNPKGGENFHAIRRSSLEFSLNYWMICTSLY-DGVTCLSWPGTSKYLV------TGCVD 160
             +WNP  GE      + SLE   + W+   +   DG    S  G+ K  V      TG + 
Sbjct:   902 VWNPATGE-----LQQSLE-GRSGWVKSVAFSPDGKKLAS--GSEKNTVKLWNPATGELL 953

Query:   161 GKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVF 194
               ++GH  +++S++ S   + L S S D T +++
Sbjct:   954 QTLEGHSQSVRSVAFSPDGKQLASSSSDTTIKLW 987

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q3SZK1 AAMP "Angio-associated migratory cell protein" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
 Identities = 41/135 (30%), Positives = 58/135 (42%)

Query:     1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQ--NRDTSSR-------NLQCT 51
             ++ G+   E  GHKDS +   FS D  L+A+G   GL++    DT          +L+  
Sbjct:   121 LSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWM 180

Query:    52 VEGPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL 106
                PR      G  D   WMW    G     F G     TCG    DGK    G ++ T+
Sbjct:   181 EWHPRAPVLLAGTADGNTWMWKVPTGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTI 239

Query:   107 SIWNPKGGENFHAIR 121
              IW+ K G + H ++
Sbjct:   240 RIWDLKQGNSIHVLK 254

GO:0045766 "positive regulation of angiogenesis" evidence=NAS

GO:0010595 "positive regulation of endothelial cell migration" evidence=IMP

GO:0014909 "smooth muscle cell migration" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

ZFIN|ZDB-GENE-040426-2370 aamp "angio-associated, migratory cell protein" [Danio rerio (taxid:7955)]

 Score = 148 (57.2 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
 Identities = 40/132 (30%), Positives = 56/132 (42%)

Query:     4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE---------- 53
             G+   E  GHKDS   + FS+D  L ASG   G+++      R    + E          
Sbjct:   115 GEVLLECTGHKDSVVCVGFSSDSALAASGDMSGVIRVWSVEKREEVWSAEVGDLEWLEWH 174

Query:    54 --GP--RGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIW 109
                P    G+ D +VWMW    GA    F   G   TCG    DGK    G ++ +L +W
Sbjct:   175 PCAPVLLAGVADGSVWMWKLPSGA-CRTFQSPGCQTTCGRILPDGKRAIVGYEDGSLRLW 233

Query:   110 NPKGGENFHAIR 121
             + K G   + I+
Sbjct:   234 DLKQGTAIYVIK 245

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q13685 AAMP "Angio-associated migratory cell protein" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
 Identities = 41/135 (30%), Positives = 57/135 (42%)

Query:     1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQ--NRDTSSR-------NLQCT 51
             ++ G+   E  GHKDS +   FS D  L+A+G   GL++    DT          +L+  
Sbjct:   121 LSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWM 180

Query:    52 VEGPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL 106
                PR      G  D   WMW    G     F G     TCG    DGK    G ++ T+
Sbjct:   181 EWHPRAPVLLAGTADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTI 239

Query:   107 SIWNPKGGENFHAIR 121
              IW+ K G   H ++
Sbjct:   240 RIWDLKQGSPIHVLK 254

GO:0030154 "cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0014909 "smooth muscle cell migration" evidence=IEP

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0009986 "cell surface" evidence=IDA

GO:0001525 "angiogenesis" evidence=NAS

GO:0008201 "heparin binding" evidence=TAS

UNIPROTKB|Q5RCG7 AAMP "Angio-associated migratory cell protein" [Pongo abelii (taxid:9601)]

 Score = 152 (58.6 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
 Identities = 41/135 (30%), Positives = 57/135 (42%)

Query:     1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQ--NRDTSSR-------NLQCT 51
             ++ G+   E  GHKDS +   FS D  L+A+G   GL++    DT          +L+  
Sbjct:   121 LSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWM 180

Query:    52 VEGPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL 106
                PR      G  D   WMW    G     F G     TCG    DGK    G ++ T+
Sbjct:   181 EWHPRAPVLLAGTADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTI 239

Query:   107 SIWNPKGGENFHAIR 121
              IW+ K G   H ++
Sbjct:   240 RIWDLKQGSPIHVLK 254

GO:0009986 "cell surface" evidence=ISS

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0014909 "smooth muscle cell migration" evidence=ISS

UNIPROTKB|Q7YR70 AAMP "Angio-associated migratory cell protein" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
 Identities = 41/135 (30%), Positives = 57/135 (42%)

Query:     1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQ--NRDTSSR-------NLQCT 51
             ++ G+   E  GHKDS +   FS D  L+A+G   GL++    DT          +L+  
Sbjct:   122 LSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWM 181

Query:    52 VEGPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL 106
                PR      G  D   WMW    G     F G     TCG    DGK    G ++ T+
Sbjct:   182 EWHPRAPVLLAGTADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTI 240

Query:   107 SIWNPKGGENFHAIR 121
              IW+ K G   H ++
Sbjct:   241 RIWDLKQGSPIHVLK 255

GO:0014909 "smooth muscle cell migration" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

RGD|1306281 Aamp "angio-associated, migratory cell protein" [Rattus norvegicus (taxid:10116)]

 Score = 150 (57.9 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 40/135 (29%), Positives = 58/135 (42%)

Query:     1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGL-----VQNRDT----SSRNLQCT 51
             ++ G+   E  GHKDS +   FS D  L+A+G   GL     V+ ++      + +L+  
Sbjct:   122 LSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVETKEEVWSFEAGDLEWM 181

Query:    52 VEGPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL 106
                PR      G  D   WMW    G     F G     TCG    DGK    G ++ T+
Sbjct:   182 EWHPRAPVLLAGTADGNTWMWKVPNGD-CKTFQGPNCPATCGRVLPDGKRAVVGYEDGTI 240

Query:   107 SIWNPKGGENFHAIR 121
              IW+ K G   H ++
Sbjct:   241 RIWDLKQGNPIHVLK 255

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0014909 "smooth muscle cell migration" evidence=IEA;ISO

ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)]

 Score = 162 (62.1 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 57/210 (27%), Positives = 92/210 (43%)

Query:     8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------- 59
             ++  GH  +  S++FS D +LLAS    G V+  DT++  LQ T+EG    +        
Sbjct:   257 AQFKGHDRAVGSVSFSHDSRLLASASGDGTVKIWDTATSFLQNTLEGHNEWVKSVVFSHD 316

Query:    60 --------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNP 111
                     +D TV +W+   G    M  GH   +    F+ D + I +GS++ T+ IW  
Sbjct:   317 SRLLASASDDGTVKIWDTATGTLQRMLKGHNDSVRSVVFSHDSRLIASGSNDRTVRIWET 376

Query:   112 KGGENFHAIRRSSLEFSLNYWMICTSLYDG--VTCLSWPGTSKY--LVTGCVDGKVDGHI 167
               G     + R + E   +  M  +  +D   +   S  G  K     TG +   ++GH 
Sbjct:   377 TTG-----LLRHTFEDHEDSVMAVSFAHDSRRLASASDGGNVKIWDTRTGSLQNVLEGHD 431

Query:   168 DAIQSLSVSAIRESLVSVSVDGTARVFEIA 197
             D + S+S S     L S S D T +++  A
Sbjct:   432 DCVNSVSFSPDSRLLASASDDRTVKIWHAA 461

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.2 bits (219), Expect = 5e-21
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 45/222 (20%)

Query: 9   EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------- 59
            + GH    + +AFS DG+LLA+G   G ++  D  +  L  T++G  G +         
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 60  -------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK 112
                   D T+ +W+ + G  +   +GH S ++   F+ DG+ + + S + T+ +W+ +
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Query: 113 GGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------- 163
            G+    +R  +               D V  +++     ++ +   DG +         
Sbjct: 124 TGKCLTTLRGHT---------------DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168

Query: 164 -----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200
                 GH   + S++ S   E L+S S DGT ++++++  +
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 6e-16
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 27/216 (12%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI- 59
           +  G+    + GH    SS+AFS DG++L+S      ++  D  +     T+ G    + 
Sbjct: 80  LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139

Query: 60  ---------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104
                          +D T+ +W+   G  +   +GH   +    F+ DG+ + + S + 
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199

Query: 105 TLSIWNPKGGENFHAIRR-----SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159
           T+ +W+   G+    +R      +S+ FS + +++ +   DG   + W   +   V    
Sbjct: 200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV-WDLRTGECV---- 254

Query: 160 DGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195
              + GH +++ SL+ S   + L S S DGT R+++
Sbjct: 255 -QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.7 bits (130), Expect = 6e-09
 Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 56/205 (27%)

Query: 8   SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMW 67
             + GH +S +SLAFS DG+LLASG                            D T+ +W
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSL-------------------------DGTIKLW 183

Query: 68  NADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLE 126
           +   G  L+  +GH   ++   F+ DG   I +GS + T+ +W+   G+    + RS+L 
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK----LLRSTLS 239

Query: 127 FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQ 171
              +  +   S                L +G  DG +                GH  ++ 
Sbjct: 240 GHSDSVVSSFSPD-----------GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Query: 172 SLSVSAIRESLVSVSVDGTARVFEI 196
           S++ S   + L S S DGT R++++
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDL 313

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 19/234 (8%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFH-GLVQNRDTSSRN-LQCTVEGPRGG 58
           +  G   S + GH D  SSLAFS DG LL + G   G ++  D S+   L+ T+ G    
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244

Query: 59  I---------------EDSTVWMWNADRGAY-LNMFSGHGSGLTCGDFTTDGKTICTGSD 102
           +                D T+ +W+    +  L   SGH S +    F+ DGK + +GS 
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304

Query: 103 NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG- 161
           + T+ +W+ + G+   ++     E  ++           V+  S  GT +          
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Query: 162 KVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL 215
           K       + S+S S     + S S DGT R+++++          ++ ++  L
Sbjct: 365 KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 33/225 (14%)

Query: 8   SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRD-TSSRNLQCTVEGPR---------- 56
             + GH+DS +S+AFS DG+LL SG   G ++  D  +   L  ++EG            
Sbjct: 59  LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118

Query: 57  ----------GGIEDSTVWMWN-ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA- 104
                         D TV +W+ +  G  +    GH   +T   F+ DGK + +GS    
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 105 TLSIWNPKGGENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159
           T+ +W+ + G+       H    SSL FS +  ++  S     T   W  ++  L+   +
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238

Query: 160 DGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204
            G  D  +      S S     L S S DGT R++++       +
Sbjct: 239 SGHSDSVV-----SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 16/120 (13%)

Query: 10  ILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRG----------- 57
           + GH+   SSL+FS DG LL SGG   G ++  D  +     T+EG              
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGR 383

Query: 58  ----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
               G  D TV +W+   G+ L    GH S +T  DF+ DGK++ +GS + T+ +W+ K 
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 72  GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
           G  L    GH   +T   F+ DGK + +GSD+ T+ +W+
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
PTZ00420	568	coronin; Provisional	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.93
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.91
PTZ00421	493	coronin; Provisional	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.9
PTZ00420	568	coronin; Provisional	99.9
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.88
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.88
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.88
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.88
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.86
KOG0639	705	consensus Transducin-like enhancer of split protei	99.86
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.85
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.85
KOG1539	910	consensus WD repeat protein [General function pred	99.84
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG2096	420	consensus WD40 repeat protein [General function pr	99.82
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.81
KOG0646	476	consensus WD40 repeat protein [General function pr	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.81
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
KOG2048	691	consensus WD40 repeat protein [General function pr	99.8
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.8
KOG1273	405	consensus WD40 repeat protein [General function pr	99.79
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.79
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.78
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
KOG4328	498	consensus WD40 protein [Function unknown]	99.76
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.76
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.75
KOG2048	691	consensus WD40 repeat protein [General function pr	99.75
KOG4328	498	consensus WD40 protein [Function unknown]	99.75
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.75
KOG1274	933	consensus WD40 repeat protein [General function pr	99.75
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.75
KOG2055	514	consensus WD40 repeat protein [General function pr	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
KOG0641	350	consensus WD40 repeat protein [General function pr	99.74
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.74
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.72
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.71
KOG1310	758	consensus WD40 repeat protein [General function pr	99.71
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.71
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.68
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.65
COG2319	466	FOG: WD40 repeat [General function prediction only	99.64
COG2319	466	FOG: WD40 repeat [General function prediction only	99.63
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.62
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.62
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.62
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.59
PRK11028	330	6-phosphogluconolactonase; Provisional	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.57
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.57
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.56
PRK04922	433	tolB translocation protein TolB; Provisional	99.56
KOG1963	792	consensus WD40 repeat protein [General function pr	99.55
KOG4227	609	consensus WD40 repeat protein [General function pr	99.54
KOG0649	325	consensus WD40 repeat protein [General function pr	99.54
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
PRK11028	330	6-phosphogluconolactonase; Provisional	99.52
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.51
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.5
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.5
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.46
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
KOG4547	541	consensus WD40 repeat-containing protein [General	99.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.45
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.45
KOG1310	758	consensus WD40 repeat protein [General function pr	99.43
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.43
PRK00178	430	tolB translocation protein TolB; Provisional	99.42
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.4
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.4
PRK01742	429	tolB translocation protein TolB; Provisional	99.38
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.37
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.37
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.36
KOG1334	559	consensus WD40 repeat protein [General function pr	99.35
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.34
KOG2321	703	consensus WD40 repeat protein [General function pr	99.34
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.31
KOG4227	609	consensus WD40 repeat protein [General function pr	99.25
PRK01029	428	tolB translocation protein TolB; Provisional	99.24
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.23
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.23
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.23
PRK05137	435	tolB translocation protein TolB; Provisional	99.21
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.21
PRK02889	427	tolB translocation protein TolB; Provisional	99.21
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.2
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.18
KOG2315	566	consensus Predicted translation initiation factor	99.18
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.18
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.17
PRK03629	429	tolB translocation protein TolB; Provisional	99.17
PRK04922	433	tolB translocation protein TolB; Provisional	99.17
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.15
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.15
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.15
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.11
PRK04792	448	tolB translocation protein TolB; Provisional	99.1
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.09
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.08
PRK00178	430	tolB translocation protein TolB; Provisional	99.07
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.06
COG4946	668	Uncharacterized protein related to the periplasmic	99.05
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.04
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.01
KOG2695	425	consensus WD40 repeat protein [General function pr	99.0
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.99
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.98
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.96
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.96
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.96
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.95
KOG4547	541	consensus WD40 repeat-containing protein [General	98.94
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.94
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.94
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.93
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.92
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.91
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.9
COG4946	668	Uncharacterized protein related to the periplasmic	98.9
PRK01029	428	tolB translocation protein TolB; Provisional	98.9
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.9
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.89
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.86
KOG2315	566	consensus Predicted translation initiation factor	98.85
KOG2314	698	consensus Translation initiation factor 3, subunit	98.82
PRK04043	419	tolB translocation protein TolB; Provisional	98.82
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.82
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.81
KOG1334	559	consensus WD40 repeat protein [General function pr	98.81
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.75
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.74
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.72
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.68
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.66
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.65
KOG2314	698	consensus Translation initiation factor 3, subunit	98.64
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.53
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.51
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.5
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.49
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.48
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.48
KOG2695	425	consensus WD40 repeat protein [General function pr	98.45
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.45
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.45
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.44
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.4
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.4
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.38
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.34
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.33
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.31
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.29
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.28
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.25
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.24
PRK02888	635	nitrous-oxide reductase; Validated	98.24
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.22
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.17
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.15
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.15
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.14
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.1
KOG3621	726	consensus WD40 repeat-containing protein [General	98.09
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.09
PRK02888	635	nitrous-oxide reductase; Validated	98.09
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.07
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.02
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.01
KOG3621	726	consensus WD40 repeat-containing protein [General	97.99
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.97
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.95
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.93
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.91
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.9
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.88
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.84
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.82
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.82
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.81
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.79
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.72
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.71
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.7
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.69
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.68
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.68
PRK13616	591	lipoprotein LpqB; Provisional	97.67
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.67
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.65
KOG2395	644	consensus Protein involved in vacuole import and d	97.61
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.59
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.57
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.55
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.53
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.45
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.45
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.43
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.43
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.27
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.25
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.23
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.21
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.21
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.18
COG3391	381	Uncharacterized conserved protein [Function unknow	97.16
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.09
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.06
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.04
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.02
PRK13616	591	lipoprotein LpqB; Provisional	97.0
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.94
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.94
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	96.85
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.77
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.69
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.61
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.53
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.49
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.48
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.47
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.44
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.38
COG3391	381	Uncharacterized conserved protein [Function unknow	96.38
KOG2444	238	consensus WD40 repeat protein [General function pr	96.38
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.29
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.28
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.23
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.18
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.06
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.96
KOG2444	238	consensus WD40 repeat protein [General function pr	95.95
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.91
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.9
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	95.81
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.77
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.69
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.68
COG5167	776	VID27 Protein involved in vacuole import and degra	95.66
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.57
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.51
PRK10115	686	protease 2; Provisional	95.46
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	95.43
KOG2395	644	consensus Protein involved in vacuole import and d	95.39
PHA02713	557	hypothetical protein; Provisional	95.38
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.36
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.24
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.18
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.13
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.1
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.08
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.03
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.97
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.94
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.7
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.61
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.07
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.94
PRK13684	334	Ycf48-like protein; Provisional	93.91
KOG2247	615	consensus WD40 repeat-containing protein [General	93.55
COG4590	733	ABC-type uncharacterized transport system, permeas	93.41
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.37
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.35
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.25
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.19
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.9
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.66
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.5
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.5
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.48
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.35
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.18
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.1
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.74
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.68
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.65
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.6
KOG2109	788	consensus WD40 repeat protein [General function pr	91.41
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.3
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.93
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.81
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	90.74
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	90.68
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.5
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.22
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.06
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.91
PHA03098	534	kelch-like protein; Provisional	89.88
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.32
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	89.11
PHA02713	557	hypothetical protein; Provisional	89.02
PRK13684	334	Ycf48-like protein; Provisional	88.07
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.81
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	87.56
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.47
KOG2377	657	consensus Uncharacterized conserved protein [Funct	86.86
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.62
PHA02790	480	Kelch-like protein; Provisional	86.51
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.42
TIGR02608	55	delta_60_rpt delta-60 repeat domain. This domain o	85.72
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.88
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	84.36
PHA03098	534	kelch-like protein; Provisional	84.17
COG5167	776	VID27 Protein involved in vacuole import and degra	83.85
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.26
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	82.95
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.83
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	82.4
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	81.89
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	81.62
TIGR03054	135	photo_alph_chp1 putative photosynthetic complex as	81.48
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	81.19
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	80.48
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	80.44

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7e-38  Score=222.94  Aligned_cols=212  Identities=24%  Similarity=0.385  Sum_probs=179.7

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE-EEEeCCCCcc---------------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ-CTVEGPRGGI---------------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~---------------------   59 (216)
                      .+..+..+.++|...|.|++|+|||+.||+|+.||.|++||..+++.+ ..+.+|...+                     
T Consensus       145 ~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s  224 (480)
T KOG0271|consen  145 DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS  224 (480)
T ss_pred             CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc
Confidence            456678899999999999999999999999999999999999998655 4667776655                     


Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc-----cc--------
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS-----LE--------  126 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-----~~--------  126 (216)
                      .||+++|||+..+.++..+.+|+.+|+|+.|--+ .++++|+.|++|++|+...|....++....     +.        
T Consensus       225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LR  303 (480)
T KOG0271|consen  225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLR  303 (480)
T ss_pred             CCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhh
Confidence            6999999999999999999999999999999754 489999999999999999887665555410     00        


Q ss_pred             ---cccc------------------------------------------------ceEEEeeeecCeEEEEeCCCCcEEE
Q 043942          127 ---FSLN------------------------------------------------YWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus       127 ---~~~~------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                         +++.                                                ......+|..-|+.+.|+||+++++
T Consensus       304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA  383 (480)
T KOG0271|consen  304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA  383 (480)
T ss_pred             ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence               0000                                                0001123788899999999999999


Q ss_pred             EecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEEE
Q 043942          156 TGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFF  214 (216)
Q Consensus       156 ~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~  214 (216)
                      +++.|..+              .+|-.+|+.++|+.|.++|++|+.|.++++|++++.+....+|.|.--+|.
T Consensus       384 SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~  456 (480)
T KOG0271|consen  384 SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA  456 (480)
T ss_pred             EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence            99999988              789999999999999999999999999999999999999999988877664

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-37  Score=222.38  Aligned_cols=199  Identities=20%  Similarity=0.269  Sum_probs=184.9

Q ss_pred             CCCceeEEeeccccceEEEEEccC--CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTD--GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDST   63 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~   63 (216)
                      .+.+.+++|++|.+.|.++.|+|.  +..+|||+.||++++|++.+...+..+.+|...+                .|.+
T Consensus       205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t  284 (459)
T KOG0272|consen  205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST  284 (459)
T ss_pred             CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccc
Confidence            456788999999999999999996  5689999999999999999988888888877655                7899


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      -++||++++..+...++|...|.+++|+|||.+++||+.|..-+|||+++|+++..+.+               |..+|.
T Consensus       285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g---------------H~k~I~  349 (459)
T KOG0272|consen  285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG---------------HIKEIL  349 (459)
T ss_pred             hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc---------------ccccee
Confidence            99999999999999999999999999999999999999999999999999999999987               999999


Q ss_pred             EEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942          144 CLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEFRRATKAPSY  208 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~  208 (216)
                      .+.|+|+|..+++|+.|+.+              .+|.+-|+.+.|+| .|.+|+|++.|++++||...+.+++..+..|
T Consensus       350 ~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH  429 (459)
T KOG0272|consen  350 SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH  429 (459)
T ss_pred             eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence            99999999999999999987              78999999999999 6889999999999999999999999999888


Q ss_pred             ceeEEEe
Q 043942          209 SFKLFFL  215 (216)
Q Consensus       209 ~~~~~~~  215 (216)
                      .-+++-+
T Consensus       430 e~kV~s~  436 (459)
T KOG0272|consen  430 EGKVISL  436 (459)
T ss_pred             ccceEEE
Confidence            8777643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-37  Score=224.00  Aligned_cols=178  Identities=23%  Similarity=0.384  Sum_probs=167.9

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWM   66 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i   66 (216)
                      +-.++..|.+|...|..++|+|+|++|+|++.|.+-++||++++..+...++|..++                .|..-+|
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence            346788999999999999999999999999999999999999999888888888776                6777799


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      ||+++++++..+.+|..+|.+++|+|+|..+|||+.|++++|||++..+.+..++.               |.+-|+.++
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA---------------H~nlVS~Vk  394 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA---------------HSNLVSQVK  394 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc---------------ccchhhheE
Confidence            99999999999999999999999999999999999999999999999888888887               999999999


Q ss_pred             eCC-CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          147 WPG-TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       147 ~~~-~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      |+| .|.+|++++.|+.+              .+|.+.|.+++.+|+++++++++.|+++++|.
T Consensus       395 ~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  395 YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            998 78899999999988              89999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-36  Score=215.15  Aligned_cols=192  Identities=20%  Similarity=0.379  Sum_probs=168.0

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~   69 (216)
                      +...+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|..-+                .+|+|++||.
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            445678999999999999999999999999999999999999999999988755                8999999999


Q ss_pred             CCccee-eeeeccCCCeeEEEEcC-----CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           70 DRGAYL-NMFSGHGSGLTCGDFTT-----DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        70 ~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      .+++++ ..+++|...|++++|.|     ..++|++++.||.+++||+..+..+..+..               |..+|+
T Consensus       187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg---------------HT~~VT  251 (480)
T KOG0271|consen  187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG---------------HTASVT  251 (480)
T ss_pred             CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc---------------CccceE
Confidence            998766 66899999999999976     568999999999999999999998888877               667777


Q ss_pred             EEEeCCCCcEEEEecccCeE------------------------------------------------------------
Q 043942          144 CLSWPGTSKYLVTGCVDGKV------------------------------------------------------------  163 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~~~~i------------------------------------------------------------  163 (216)
                      |++|.-+ .++++++.|+.|                                                            
T Consensus       252 CvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~  330 (480)
T KOG0271|consen  252 CVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA  330 (480)
T ss_pred             EEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence            7776543 356666666666                                                            


Q ss_pred             ---------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942          164 ---------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF  210 (216)
Q Consensus       164 ---------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~  210 (216)
                                                       .+|..-|..+.||||++++|+++.|+.|++|+-++++-+..+..|-.
T Consensus       331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~  410 (480)
T KOG0271|consen  331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA  410 (480)
T ss_pred             hhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc
Confidence                                             68889999999999999999999999999999999998888877766


Q ss_pred             eEE
Q 043942          211 KLF  213 (216)
Q Consensus       211 ~~~  213 (216)
                      ++|
T Consensus       411 ~VY  413 (480)
T KOG0271|consen  411 AVY  413 (480)
T ss_pred             eeE
Confidence            665

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.1e-36  Score=229.22  Aligned_cols=180  Identities=25%  Similarity=0.431  Sum_probs=171.4

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN   68 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d   68 (216)
                      ...+++.+|.++|+.+.|+|+.++|+++|.|+++|+|.+.+...+-.+.+|..++                .|++.++|.
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS  521 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence            3456789999999999999999999999999999999999999999999988866                899999999


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      .....+++.+.+|.+.|.|++|+|+..++++||.|+++++||+.+|..+..|.+               |.++|.+++|+
T Consensus       522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---------------H~~~V~al~~S  586 (707)
T KOG0263|consen  522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---------------HKGPVTALAFS  586 (707)
T ss_pred             cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---------------CCCceEEEEEc
Confidence            999999999999999999999999999999999999999999999999999987               99999999999


Q ss_pred             CCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          149 GTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       149 ~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      |+|++|++|+.||.|              .+|.+.|.++.|+.+|..||+++.|++|++||+...
T Consensus       587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999998              789999999999999999999999999999998753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.6e-35  Score=200.38  Aligned_cols=194  Identities=19%  Similarity=0.283  Sum_probs=175.9

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------------
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------------   59 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------------   59 (216)
                      ..++|++|.+.|+++.|++|+++|++++.||.+.|||..+.+....++.+..-+                          
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            347899999999999999999999999999999999998887766665544322                          


Q ss_pred             -------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEec
Q 043942           60 -------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGS  101 (216)
Q Consensus        60 -------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~  101 (216)
                                                           .|.+..+||+++++.+..+.+|.+.|.+++++| +++.+++|+
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~  206 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG  206 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence                                                 788999999999999999999999999999999 999999999


Q ss_pred             CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------Ee
Q 043942          102 DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DG  165 (216)
Q Consensus       102 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~  165 (216)
                      .|+..++||++.+..++.|..               |...|++++|.|+|.-+++|++|+..                ..
T Consensus       207 cD~~aklWD~R~~~c~qtF~g---------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~  271 (343)
T KOG0286|consen  207 CDKSAKLWDVRSGQCVQTFEG---------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS  271 (343)
T ss_pred             cccceeeeeccCcceeEeecc---------------cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence            999999999999999999998               99999999999999999999999987                22


Q ss_pred             eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEEE
Q 043942          166 HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFF  214 (216)
Q Consensus       166 ~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~  214 (216)
                      -..+|++++||..|++|++|..|.++.+||.-.++....+..|..++-.
T Consensus       272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvSc  320 (343)
T KOG0286|consen  272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSC  320 (343)
T ss_pred             ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEE
Confidence            2468999999999999999999999999999999988888888776654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-33  Score=193.88  Aligned_cols=187  Identities=18%  Similarity=0.274  Sum_probs=165.4

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVW   65 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~   65 (216)
                      +.|.+++.++||...|..+..++||++.++++.|+.+++||+.+++..+.+.+|...+                .|.+++
T Consensus        51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik  130 (315)
T KOG0279|consen   51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK  130 (315)
T ss_pred             ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence            4588999999999999999999999999999999999999999999999999998766                899999


Q ss_pred             EEECCCcceeeeeec-cCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           66 MWNADRGAYLNMFSG-HGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        66 i~d~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      +||+........... +.+.|.|+.|+|+  ..+|++++.|++|++||+++.+....+..               |...+
T Consensus       131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g---------------h~~~v  195 (315)
T KOG0279|consen  131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG---------------HSGYV  195 (315)
T ss_pred             eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc---------------ccccE
Confidence            999985544433332 2789999999997  78999999999999999999998888887               99999


Q ss_pred             EEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      +.+.++|||..+++|+.||.+             ..|...|.+++|+|+.-.|+.+. +..|+|||+.+...+..
T Consensus       196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~  269 (315)
T KOG0279|consen  196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEE  269 (315)
T ss_pred             EEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhh
Confidence            999999999999999999988             57788999999999987776654 56699999998776543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.3e-33  Score=201.79  Aligned_cols=191  Identities=20%  Similarity=0.315  Sum_probs=175.3

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMW   67 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~   67 (216)
                      +|.++.+|..|+++|.++.|+.+|.||++++.|+++.+||..+++..+.+..+..+.               .|+.|+++
T Consensus       265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~  344 (524)
T KOG0273|consen  265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVC  344 (524)
T ss_pred             CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEE
Confidence            577888999999999999999999999999999999999999999999998887762               78999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      .+...+++.++.+|.+.|.++.|+|.+.+|++++.|+++++|..........+..               |...|+.+.|
T Consensus       345 kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~---------------Hskei~t~~w  409 (524)
T KOG0273|consen  345 KVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQA---------------HSKEIYTIKW  409 (524)
T ss_pred             EecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhh---------------hccceeeEee
Confidence            9999999999999999999999999999999999999999999998888888887               9999999999


Q ss_pred             CCCC---------cEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          148 PGTS---------KYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       148 ~~~~---------~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      +|+|         ..+++++.|+.+              ..|..+|++++|+|+|+|+++|+.||.|.+|+.++++....
T Consensus       410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s  489 (524)
T KOG0273|consen  410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS  489 (524)
T ss_pred             cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence            9864         468899999988              68999999999999999999999999999999999887665


Q ss_pred             cCCc
Q 043942          205 APSY  208 (216)
Q Consensus       205 ~~~~  208 (216)
                      ....
T Consensus       490 ~~~~  493 (524)
T KOG0273|consen  490 YQGT  493 (524)
T ss_pred             ecCC
Confidence            4443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-32  Score=185.73  Aligned_cols=190  Identities=22%  Similarity=0.311  Sum_probs=167.2

Q ss_pred             CceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCC-----CceEEEEeCCCCcc----------------cC
Q 043942            4 GDWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSS-----RNLQCTVEGPRGGI----------------ED   61 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~-----~~~~~~~~~~~~~~----------------~~   61 (216)
                      ..+..++++|.+.|..++..+. .+.+++++.|..+.+|++..     |...+.+.+|...+                .|
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            3455689999999999999986 47899999999999998764     56788888877655                89


Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      +++++||+.+++..+.+.+|...|.+++|+||.+.+++|+.|++|++|++. +.+..++....             +.+-
T Consensus        85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~-------------~~~W  150 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDS-------------HREW  150 (315)
T ss_pred             ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCC-------------CcCc
Confidence            999999999999999999999999999999999999999999999999988 55555554311             3788


Q ss_pred             eEEEEeCCC--CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          142 VTCLSWPGT--SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       142 v~~~~~~~~--~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      |.++.|+|+  ..+|++++.|+.+              .+|.+.++.+++||||..+++|+.||.+.+||+++++.+..+
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL  230 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence            999999998  6899999999998              789999999999999999999999999999999999987765


Q ss_pred             CC
Q 043942          206 PS  207 (216)
Q Consensus       206 ~~  207 (216)
                      +.
T Consensus       231 ~a  232 (315)
T KOG0279|consen  231 EA  232 (315)
T ss_pred             cC
Confidence            54

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.6e-32  Score=184.68  Aligned_cols=196  Identities=17%  Similarity=0.245  Sum_probs=164.0

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN   68 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d   68 (216)
                      .++.++.+|...|.++.|..+|++++||+.||+++|||++...+.+.++.. .++                .+|.|++||
T Consensus        74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen   74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWD  152 (311)
T ss_pred             CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEE
Confidence            478999999999999999999999999999999999999997666655543 222                899999999


Q ss_pred             CCCcceeeeee-ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           69 ADRGAYLNMFS-GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        69 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      +.+..+...+. .....|.++...|||..++.+...|..++|++-+.+....+...         .....|+..+..+.+
T Consensus       153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~---------~k~~ah~~~il~C~l  223 (311)
T KOG0315|consen  153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPV---------HKFQAHNGHILRCLL  223 (311)
T ss_pred             ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEh---------hheecccceEEEEEE
Confidence            99876655543 34467999999999999999999999999999875433333220         112238999999999


Q ss_pred             CCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942          148 PGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF  210 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~  210 (216)
                      ||++++|++++.|..+               .+|..++.+++||.||+||++++.|+.+++|+++.++....-+.|..
T Consensus       224 SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K  301 (311)
T KOG0315|consen  224 SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK  301 (311)
T ss_pred             CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence            9999999999999987               68888999999999999999999999999999999998776666543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.5e-32  Score=187.22  Aligned_cols=177  Identities=23%  Similarity=0.384  Sum_probs=163.6

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMW   67 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~   67 (216)
                      +..+++.+|.+-+.|+.|-+|+ .|+|++.|.+..+||+++++.+..+.+|...+                 .|+..++|
T Consensus       136 ~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW  214 (343)
T KOG0286|consen  136 RVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW  214 (343)
T ss_pred             eeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence            3556799999999999999865 69999999999999999999999999998766                 78999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      |++.+..++++.+|+..|++++|.|+|.-+++|++|++.++||++..+.+..+....             ...+|++++|
T Consensus       215 D~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~-------------~~~gitSv~F  281 (343)
T KOG0286|consen  215 DVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS-------------IICGITSVAF  281 (343)
T ss_pred             eccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc-------------ccCCceeEEE
Confidence            999999999999999999999999999999999999999999999998888887533             5678999999


Q ss_pred             CCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          148 PGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      +..|++|++|..|..+              .+|++.|+++..+|||.-++++|.|..+|||.
T Consensus       282 S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  282 SKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999888876              79999999999999999999999999999994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-32  Score=192.61  Aligned_cols=195  Identities=22%  Similarity=0.367  Sum_probs=173.6

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC-CceEEEEeCCCCcc----------------cCcEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVEGPRGGI----------------EDSTV   64 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~----------------~~~~v   64 (216)
                      ++|++...|++|.+.|.+++|+..|++||+++.|-.+++||..+ .++++.+.+|...+                .|.+|
T Consensus       138 ~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti  217 (406)
T KOG0295|consen  138 ETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI  217 (406)
T ss_pred             cchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccce
Confidence            67899999999999999999999999999999999999999986 34444444444332                89999


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      +.|++.++.++.++.+|...|..++.+.||..+++++.|.++++|-+.+++....+..               |+.+|.+
T Consensus       218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~---------------hEh~vEc  282 (406)
T KOG0295|consen  218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE---------------HEHPVEC  282 (406)
T ss_pred             eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc---------------cccceEE
Confidence            9999999999999999999999999999999999999999999999999988888887               8899999


Q ss_pred             EEeCCC---------------CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          145 LSWPGT---------------SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       145 ~~~~~~---------------~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      ++|.|.               +.++.+++.|+.|              .+|.++|.+++|+|.|+||+++.+|+++++||
T Consensus       283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd  362 (406)
T KOG0295|consen  283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD  362 (406)
T ss_pred             EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence            998652               2588999999988              79999999999999999999999999999999


Q ss_pred             cccccceeecCCccee
Q 043942          196 IAEFRRATKAPSYSFK  211 (216)
Q Consensus       196 ~~~~~~~~~~~~~~~~  211 (216)
                      +++.+++..++.|...
T Consensus       363 l~~~~cmk~~~ah~hf  378 (406)
T KOG0295|consen  363 LKNLQCMKTLEAHEHF  378 (406)
T ss_pred             eccceeeeccCCCcce
Confidence            9999998887766543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.7e-31  Score=202.10  Aligned_cols=184  Identities=23%  Similarity=0.419  Sum_probs=160.3

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------------
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------------   59 (216)
                      ..+-..++|...+.+++++|||+++|||+.||.|+|||..++-+..++..|..++                         
T Consensus       341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence            3455667999999999999999999999999999999999999999999998876                         


Q ss_pred             -----------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC
Q 043942           60 -----------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA  104 (216)
Q Consensus        60 -----------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~  104 (216)
                                                         ..-.|++|++++|+.+..+.+|.++|.+++|+|++..|++++.|+
T Consensus       421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk  500 (893)
T KOG0291|consen  421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK  500 (893)
T ss_pred             ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence                                               334566777777777888889999999999999999999999999


Q ss_pred             eEEEEeCCCCc-eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------------
Q 043942          105 TLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------------  163 (216)
Q Consensus       105 ~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------------  163 (216)
                      +|++||+-... .+.++.                ....+..++|+|+|+.+++++.||.|                    
T Consensus       501 TVRiW~if~s~~~vEtl~----------------i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~  564 (893)
T KOG0291|consen  501 TVRIWDIFSSSGTVETLE----------------IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDL  564 (893)
T ss_pred             eEEEEEeeccCceeeeEe----------------eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhc
Confidence            99999987553 445555                77889999999999999999999988                    


Q ss_pred             --------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          164 --------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       164 --------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                                    .......+.+++++||+++++||..+.|.+|++.++-.+.+
T Consensus       565 ~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk  619 (893)
T KOG0291|consen  565 SGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK  619 (893)
T ss_pred             cccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeee
Confidence                          23346789999999999999999999999999998765544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.98  E-value=3.9e-30  Score=174.21  Aligned_cols=191  Identities=18%  Similarity=0.247  Sum_probs=165.1

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDST   63 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~   63 (216)
                      .+|.+.++++...+.|+.++..|+++.||+++ ...||+||+++++  ++.++++|...+                +||+
T Consensus        28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt  106 (311)
T KOG0315|consen   28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT  106 (311)
T ss_pred             hcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence            57999999998888999999999999999988 5689999999874  678888886654                8999


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      ++|||++...+-+.++ |..+|+++..+|+...|++|..+|.|++||+.......++..+              ....|.
T Consensus       107 ~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe--------------~~~~i~  171 (311)
T KOG0315|consen  107 VKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE--------------DDTSIQ  171 (311)
T ss_pred             EEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC--------------CCccee
Confidence            9999999866655555 8899999999999999999999999999999987666555431              456789


Q ss_pred             EEEeCCCCcEEEEecccCeE--------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc-cce
Q 043942          144 CLSWPGTSKYLVTGCVDGKV--------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF-RRA  202 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~~~~i--------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~-~~~  202 (216)
                      ++...|||++++.+...|..                    +.|...+..+.+||++++|+++|.|.+++||+.++. +..
T Consensus       172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle  251 (311)
T KOG0315|consen  172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE  251 (311)
T ss_pred             eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE
Confidence            99999999999999998876                    789999999999999999999999999999999987 444


Q ss_pred             eecCCc
Q 043942          203 TKAPSY  208 (216)
Q Consensus       203 ~~~~~~  208 (216)
                      ..+.++
T Consensus       252 ~~l~gh  257 (311)
T KOG0315|consen  252 LVLTGH  257 (311)
T ss_pred             EEeecC
Confidence            455554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=5.3e-30  Score=172.42  Aligned_cols=206  Identities=15%  Similarity=0.250  Sum_probs=168.5

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~   69 (216)
                      ....+..|+++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...+                .|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            456788999999999999999999999999999999999999999999988766                7899999999


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC--ceeEEeeccc---ccccccce------------
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG--ENFHAIRRSS---LEFSLNYW------------  132 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~--~~~~~~~~~~---~~~~~~~~------------  132 (216)
                      ++|+.++.+++|.+.|+.++|+.+...+++|+.|.++++||-++.  ++++.+....   ........            
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvR  168 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVR  168 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEE
Confidence            999999999999999999999999999999999999999999865  3444443210   00000000            


Q ss_pred             --------EEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeC--CEEEEEEecCCCeEEEEeCC
Q 043942          133 --------MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHID--AIQSLSVSAIRESLVSVSVD  188 (216)
Q Consensus       133 --------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~--~i~~~~~~~~~~~l~s~~~d  188 (216)
                              ....-...+|++++|+++++..++++.|+.+              .+|.+  .=..++++.....+++|++|
T Consensus       169 tydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED  248 (307)
T KOG0316|consen  169 TYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED  248 (307)
T ss_pred             EEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCC
Confidence                    0011156789999999999999999999988              45543  33556777888899999999


Q ss_pred             CcEEEEEcccccceeecCCccee
Q 043942          189 GTARVFEIAEFRRATKAPSYSFK  211 (216)
Q Consensus       189 ~~v~vw~~~~~~~~~~~~~~~~~  211 (216)
                      |.|++||+.+...+.+++.++..
T Consensus       249 G~Vy~wdLvd~~~~sk~~~~~~v  271 (307)
T KOG0316|consen  249 GKVYFWDLVDETQISKLSVVSTV  271 (307)
T ss_pred             ceEEEEEeccceeeeeeccCCce
Confidence            99999999998887776655543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.2e-31  Score=206.29  Aligned_cols=212  Identities=18%  Similarity=0.280  Sum_probs=177.3

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~   67 (216)
                      |.++..+..|.++|..+.|+|++.+|++|+.|-.|+||+..+.+++.++.+|..-+                .|.+|+||
T Consensus        41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW  120 (1202)
T KOG0292|consen   41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW  120 (1202)
T ss_pred             hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence            34566788999999999999999999999999999999999999888888877644                89999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec--------ccc----cc--cccceE
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR--------SSL----EF--SLNYWM  133 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~--------~~~----~~--~~~~~~  133 (216)
                      +.++++++..+++|...|.|..|+|....++++|-|.+|++||+..-+....-+.        .+.    ..  +.-...
T Consensus       121 Nwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~  200 (1202)
T KOG0292|consen  121 NWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH  200 (1202)
T ss_pred             eccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence            9999999999999999999999999999999999999999999873322111111        011    01  111233


Q ss_pred             EEeeeecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          134 ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      +..+|...|+-++|+|.-..+++|++|+.+                .+|.++|+++-|+|..+++++.|+|++|+|||+.
T Consensus       201 VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  201 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             eecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence            456799999999999999999999999998                7999999999999999999999999999999999


Q ss_pred             cccceeecCCcceeEEEe
Q 043942          198 EFRRATKAPSYSFKLFFL  215 (216)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~  215 (216)
                      ..+.+..+....-++|+|
T Consensus       281 kRt~v~tfrrendRFW~l  298 (1202)
T KOG0292|consen  281 KRTSVQTFRRENDRFWIL  298 (1202)
T ss_pred             cccceeeeeccCCeEEEE
Confidence            888777665444444443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=4e-31  Score=187.28  Aligned_cols=190  Identities=20%  Similarity=0.326  Sum_probs=173.7

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN   68 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d   68 (216)
                      ++.+.+++|.+.|.|+++.|-.++|+||+.|++++|||+.++++..++.+|-..+                .|+.|+.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            3456788999999999999999999999999999999999999999999877654                899999999


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      ++..+.++.+.+|-..|.|++.+|.-+.|++|+.|.++++||+++...+..+.+               |..+|..+.+.
T Consensus       222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G---------------H~~~V~~V~~~  286 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG---------------HTNPVASVMCQ  286 (460)
T ss_pred             chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC---------------CCCcceeEEee
Confidence            999999999999999999999999999999999999999999999999999998               99999999999


Q ss_pred             CCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942          149 GTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF  210 (216)
Q Consensus       149 ~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~  210 (216)
                      |....+++|+.|+.+              ..|...|.+++.+|....+++++.| .++-|++..++.+..+..+..
T Consensus       287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~  361 (460)
T KOG0285|consen  287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA  361 (460)
T ss_pred             cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc
Confidence            988899999999998              6788899999999999999998876 689999998887766555543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=3.7e-32  Score=195.04  Aligned_cols=176  Identities=22%  Similarity=0.357  Sum_probs=160.1

Q ss_pred             EEeeccc-cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942            8 SEILGHK-DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus         8 ~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~   70 (216)
                      +.+++|. ..|++++|+|+...|++++.||+|+|||....+....+.+|.-.+                .|+.|++||.+
T Consensus       173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence            3444554 899999999998999999999999999999888877777776544                78899999999


Q ss_pred             CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC-
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-  149 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  149 (216)
                      ++.++.++..|...|..+.|+|++++|+|++.|..++++|+++.+.+..+..               |...++++.|+| 
T Consensus       253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~---------------Hkkdv~~~~WhP~  317 (464)
T KOG0284|consen  253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG---------------HKKDVTSLTWHPL  317 (464)
T ss_pred             CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc---------------chhhheeeccccc
Confidence            9999999999999999999999999999999999999999998888888887               999999999999 


Q ss_pred             CCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          150 TSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       150 ~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ...+|.+|+.||.+               .+|...|++++|+|-|..|++|+.|.++++|.-..
T Consensus       318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  318 NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             cccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence            56788899999988               68999999999999999999999999999997543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=7.5e-30  Score=197.30  Aligned_cols=188  Identities=24%  Similarity=0.406  Sum_probs=164.5

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEEC-CCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDT-SSRNLQCTVEGPRGGI----------------EDSTVWMWN   68 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~-~~~~~~~~~~~~~~~~----------------~~~~v~i~d   68 (216)
                      ..+.+.+|...|.+++|+|+++++++++.|+++++||+ ..+..++++.+|...+                .|++|++||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence            56677899999999999999999999999999999999 5568999999998876                899999999


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeec--CeEE
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYD--GVTC  144 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~v~~  144 (216)
                      +++++++..+.+|...|++++|+++++++++++.|+.|++||+.++..  ...+..               +..  +++.
T Consensus       275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~---------------~~~~~~~~~  339 (456)
T KOG0266|consen  275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG---------------AENSAPVTS  339 (456)
T ss_pred             ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC---------------CCCCCceeE
Confidence            999999999999999999999999999999999999999999999984  444443               222  6999


Q ss_pred             EEeCCCCcEEEEecccCeE--------------EeeeC---CEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          145 LSWPGTSKYLVTGCVDGKV--------------DGHID---AIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       145 ~~~~~~~~~l~~~~~~~~i--------------~~~~~---~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      +.|+|++.++++++.|+.+              .+|..   .+.+...++.++++++++.|+.|++|++.++.....+..
T Consensus       340 ~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~  419 (456)
T KOG0266|consen  340 VQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG  419 (456)
T ss_pred             EEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC
Confidence            9999999999999999887              34444   344445577899999999999999999998877777776


Q ss_pred             c
Q 043942          208 Y  208 (216)
Q Consensus       208 ~  208 (216)
                      |
T Consensus       420 h  420 (456)
T KOG0266|consen  420 H  420 (456)
T ss_pred             C
Confidence            6

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=2e-30  Score=199.19  Aligned_cols=192  Identities=22%  Similarity=0.363  Sum_probs=169.3

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-------------------------------eEEEEeCC
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-------------------------------LQCTVEGP   55 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-------------------------------~~~~~~~~   55 (216)
                      ..++..-...++|..|++|+..||.|-.|..|++|.+...+                               ...++.+|
T Consensus       371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            34444445679999999999999999999999999987421                               12334556


Q ss_pred             CCcc----------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEE
Q 043942           56 RGGI----------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA  119 (216)
Q Consensus        56 ~~~~----------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~  119 (216)
                      .+++                +|+++++|.+.+...+-.+++|..+|+.+.|+|.|-++||++.|++-++|.....++...
T Consensus       451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi  530 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI  530 (707)
T ss_pred             CCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence            6655                899999999999999999999999999999999999999999999999999999888888


Q ss_pred             eecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEE
Q 043942          120 IRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSV  185 (216)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~  185 (216)
                      +.+               |...|.|+.|+|+..|+++|+.|.++              .+|.++|++++|||+|++|++|
T Consensus       531 fag---------------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  531 FAG---------------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG  595 (707)
T ss_pred             hcc---------------cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec
Confidence            877               99999999999999999999999988              7899999999999999999999


Q ss_pred             eCCCcEEEEEcccccceeecCCcceeEE
Q 043942          186 SVDGTARVFEIAEFRRATKAPSYSFKLF  213 (216)
Q Consensus       186 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~  213 (216)
                      +.||.|++||+.+++.+..+..|...++
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~  623 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIY  623 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCcee
Confidence            9999999999999998887777755444

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=3.4e-31  Score=193.55  Aligned_cols=188  Identities=21%  Similarity=0.378  Sum_probs=166.9

Q ss_pred             ceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCC-CceEEEEeCCCCcc----------------cCcEEEE
Q 043942            5 DWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSS-RNLQCTVEGPRGGI----------------EDSTVWM   66 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~----------------~~~~v~i   66 (216)
                      +.+.++.+|...|.++.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..++                .|+.+++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            46778999999999999999 889999999999999999987 89999999999877                8999999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      ||+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++++..               |-..|..+
T Consensus       285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~---------------hLg~i~~i  348 (503)
T KOG0282|consen  285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR---------------HLGAILDI  348 (503)
T ss_pred             eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh---------------hhhheeee
Confidence            9999999999887 45678999999988 8899999999999999999998888876               77788888


Q ss_pred             EeCCCCcEEEEecccCeE------------------------------------------------------------Ee
Q 043942          146 SWPGTSKYLVTGCVDGKV------------------------------------------------------------DG  165 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i------------------------------------------------------------~~  165 (216)
                      .|-++|+.++++++|+.+                                                            .+
T Consensus       349 ~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG  428 (503)
T KOG0282|consen  349 TFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG  428 (503)
T ss_pred             EEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc
Confidence            888888888888888776                                                            34


Q ss_pred             ee--CCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942          166 HI--DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSY  208 (216)
Q Consensus       166 ~~--~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~  208 (216)
                      |.  +.-..+.|||||.+|++|+.||.+.+||.++.+....++.|
T Consensus       429 h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  429 HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence            43  45678899999999999999999999999998887777766

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-29  Score=173.27  Aligned_cols=181  Identities=18%  Similarity=0.229  Sum_probs=157.5

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------cCc
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------EDS   62 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------~~~   62 (216)
                      +|+.+-+++||.+.|+|+..+.+.++++||+.|.++++||.++|+.+.+++.+...-                    ..+
T Consensus        41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~  120 (327)
T KOG0643|consen   41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTC  120 (327)
T ss_pred             CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcce
Confidence            689999999999999999999999999999999999999999999998887654422                    677


Q ss_pred             EEEEEECC-------CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeE-EeecccccccccceEE
Q 043942           63 TVWMWNAD-------RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFH-AIRRSSLEFSLNYWMI  134 (216)
Q Consensus        63 ~v~i~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~  134 (216)
                      .|.++|++       ...+...+..+...++.+-|.|-+++|++|..||.|..||.++|+... ....            
T Consensus       121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~------------  188 (327)
T KOG0643|consen  121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE------------  188 (327)
T ss_pred             EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh------------
Confidence            88999988       345677888888999999999999999999999999999999986543 3343            


Q ss_pred             EeeeecCeEEEEeCCCCcEEEEecccCeE---------------------------------------------------
Q 043942          135 CTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------------------------------------------  163 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------------------------------------------  163 (216)
                         |...|+.+.++|+..++++++.|..-                                                   
T Consensus       189 ---h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~G  265 (327)
T KOG0643|consen  189 ---HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAG  265 (327)
T ss_pred             ---hccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeeccccc
Confidence               77788888888888888888877643                                                   


Q ss_pred             ------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          164 ------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       164 ------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                                        .+|-++|.+++|+|+|+..++|++||.||+..+..
T Consensus       266 KFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  266 KFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             chhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence                              79999999999999999999999999999986654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.1e-29  Score=192.70  Aligned_cols=188  Identities=27%  Similarity=0.489  Sum_probs=164.0

Q ss_pred             EEeecc-ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcEEEEEE
Q 043942            8 SEILGH-KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDSTVWMWN   68 (216)
Q Consensus         8 ~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~v~i~d   68 (216)
                      ..+..| ...|.++.|+++|+++++++.|+.+++|+....+  ....+.+|...+                .|.++++||
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd  231 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD  231 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence            334343 7789999999999999999999999999997777  666666666555                899999999


Q ss_pred             C-CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           69 A-DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        69 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      + ..+..++++++|...|++++|+|+++.+++|+.|++|++||+++++....+..               |.+.|++++|
T Consensus       232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~---------------hs~~is~~~f  296 (456)
T KOG0266|consen  232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG---------------HSDGISGLAF  296 (456)
T ss_pred             ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec---------------cCCceEEEEE
Confidence            9 45588899999999999999999999999999999999999999999999988               9999999999


Q ss_pred             CCCCcEEEEecccCeE--------E--------eeeC--CEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          148 PGTSKYLVTGCVDGKV--------D--------GHID--AIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i--------~--------~~~~--~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      ++++++|++++.|+.+        .        .+..  +++.+.|+|++.++++++.|+.+++||+...+.......+.
T Consensus       297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~  376 (456)
T KOG0266|consen  297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS  376 (456)
T ss_pred             CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence            9999999999999988        1        1122  58999999999999999999999999999887776555544


Q ss_pred             e
Q 043942          210 F  210 (216)
Q Consensus       210 ~  210 (216)
                      .
T Consensus       377 ~  377 (456)
T KOG0266|consen  377 N  377 (456)
T ss_pred             C
Confidence            3

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.1e-28  Score=182.45  Aligned_cols=201  Identities=20%  Similarity=0.256  Sum_probs=161.0

Q ss_pred             CCCceeEEee---ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cC
Q 043942            2 NQGDWASEIL---GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------ED   61 (216)
Q Consensus         2 ~~g~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~   61 (216)
                      .+|+.+..|.   +|++.|++++|+||++.|+|++.|.+++|||..+.++++++.......                 .+
T Consensus       220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~  299 (603)
T KOG0318|consen  220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS  299 (603)
T ss_pred             CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence            4688888998   899999999999999999999999999999999999999987665511                 78


Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEe-----------eccc------
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI-----------RRSS------  124 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~-----------~~~~------  124 (216)
                      |++.+++.....++..+.+|...|+++..+|++++|.+|+.||.|.-||..++..-...           ....      
T Consensus       300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t  379 (603)
T KOG0318|consen  300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT  379 (603)
T ss_pred             cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence            99999999988899999999999999999999999999999999999999876432111           1000      


Q ss_pred             ------------------------ccccccceEEEe--------------------------------------------
Q 043942          125 ------------------------LEFSLNYWMICT--------------------------------------------  136 (216)
Q Consensus       125 ------------------------~~~~~~~~~~~~--------------------------------------------  136 (216)
                                              +..++.......                                            
T Consensus       380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va  459 (603)
T KOG0318|consen  380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA  459 (603)
T ss_pred             EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence                                    000010000000                                            


Q ss_pred             -------------------------eeecCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEe
Q 043942          137 -------------------------SLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVS  176 (216)
Q Consensus       137 -------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~  176 (216)
                                               .|..++++++++||+.+|+++...+.+               .-|...|.+++|+
T Consensus       460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWs  539 (603)
T KOG0318|consen  460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWS  539 (603)
T ss_pred             EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeC
Confidence                                     066778888888888888888777766               3488899999999


Q ss_pred             cCCCeEEEEeCCCcEEEEEcccccce
Q 043942          177 AIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       177 ~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      |+.+++|+|+.|-+|.||+++.+...
T Consensus       540 P~n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  540 PNNKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             CCceEEEeccccceEEEEEccChhhh
Confidence            99999999999999999999876544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=8.4e-31  Score=188.12  Aligned_cols=181  Identities=18%  Similarity=0.360  Sum_probs=157.4

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-Cc----------------ccCcEEEEEECCC
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-GG----------------IEDSTVWMWNADR   71 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~----------------~~~~~v~i~d~~~   71 (216)
                      .+++|.++|.++.|+++|.++++|+.+|.|++|+.+-... +.++.+. ..                ..|++|+|||...
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence            3568999999999999999999999999999999764322 1121111 11                1899999999999


Q ss_pred             cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942           72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS  151 (216)
Q Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  151 (216)
                      .+....+.+|.-.|.+++|+|.-.++++++.|..|++||.+++.++.++..               |...|..+.|+|++
T Consensus       212 ~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~---------------HKntVl~~~f~~n~  276 (464)
T KOG0284|consen  212 PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG---------------HKNTVLAVKFNPNG  276 (464)
T ss_pred             CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh---------------ccceEEEEEEcCCC
Confidence            988889999999999999999999999999999999999999999999987               99999999999999


Q ss_pred             cEEEEecccCeE--------------EeeeCCEEEEEEecC-CCeEEEEeCCCcEEEEEcccccceeec
Q 043942          152 KYLVTGCVDGKV--------------DGHIDAIQSLSVSAI-RESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       152 ~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~-~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      ++|++++.|..+              ++|...++++.|+|- ..+|.+++.||.|..|.+...+++..+
T Consensus       277 N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i  345 (464)
T KOG0284|consen  277 NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI  345 (464)
T ss_pred             CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence            999999999987              789999999999995 567889999999999999855555443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.4e-28  Score=169.07  Aligned_cols=206  Identities=18%  Similarity=0.193  Sum_probs=165.0

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDST   63 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~   63 (216)
                      .+-++.+.++.-...|+++.|+++|.++++++.|..+++||..+++..+++..+.-++                  .|.+
T Consensus         2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence            3445667777777899999999999999999999999999999999999887765443                  6889


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecc---cccccccceEEEe----
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRS---SLEFSLNYWMICT----  136 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~----  136 (216)
                      |+..++.+.+.++.+.||...|++++.+|-+..+++++.|++|++||++..++...+...   ...+++++.....    
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence            999999999999999999999999999999999999999999999999976655444321   1223333322221    


Q ss_pred             -----------------------eeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeC---CEEEEEEe
Q 043942          137 -----------------------SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHID---AIQSLSVS  176 (216)
Q Consensus       137 -----------------------~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~---~i~~~~~~  176 (216)
                                             ....+.+.+.|+|+|++++.+...+.+              ..+..   --.+.+|+
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence                                   135568899999999999988888755              22221   12578999


Q ss_pred             cCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          177 AIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       177 ~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      ||++++++|+.||+|.+|++++++.......
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            9999999999999999999999887765443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=1.2e-29  Score=179.87  Aligned_cols=187  Identities=21%  Similarity=0.320  Sum_probs=170.6

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV   64 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v   64 (216)
                      |++|++..++.||...|..+++|+-..|+++++.|+.|+.||++..+.++.+.+|-.++                .|.++
T Consensus       180 latg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~  259 (460)
T KOG0285|consen  180 LATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI  259 (460)
T ss_pred             cccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceE
Confidence            57899999999999999999999999999999999999999999999888888877765                89999


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      ++||+++...+..+.+|..+|..+.+.|....+++|+.|++|++||++.|+....+..               |...+++
T Consensus       260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~---------------hkksvra  324 (460)
T KOG0285|consen  260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH---------------HKKSVRA  324 (460)
T ss_pred             EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec---------------ccceeeE
Confidence            9999999999999999999999999999889999999999999999999999888887               8999999


Q ss_pred             EEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          145 LSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       145 ~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      ++.+|....+++++.|..-             .+|..-|..++...|+ ++++|++.|.+.+||.+++...+
T Consensus       325 l~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ  395 (460)
T KOG0285|consen  325 LCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQ  395 (460)
T ss_pred             EecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccc
Confidence            9999999999999988654             6778889999887765 67889999999999999865543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=1.9e-29  Score=174.81  Aligned_cols=190  Identities=19%  Similarity=0.273  Sum_probs=171.0

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEEC
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNA   69 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~   69 (216)
                      ...+++|.+.|..+.|.+|++.+++++.|.+++.||.++++..+..+.|...+                 .|+++++||+
T Consensus        83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~  162 (338)
T KOG0265|consen   83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI  162 (338)
T ss_pred             eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEee
Confidence            34678999999999999999999999999999999999999999999888765                 8999999999


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ++...+++++ ...+++++.|..++..+.+|+-|+.|++||++.+.....+.+               |.+.|+.+..+|
T Consensus       163 R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG---------------h~DtIt~lsls~  226 (338)
T KOG0265|consen  163 RKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG---------------HADTITGLSLSR  226 (338)
T ss_pred             cccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeec---------------ccCceeeEEecc
Confidence            9998888876 457799999999999999999999999999999999999987               999999999999


Q ss_pred             CCcEEEEecccCeE------------------Eee----eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          150 TSKYLVTGCVDGKV------------------DGH----IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       150 ~~~~l~~~~~~~~i------------------~~~----~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      +|.++.+-+.|..+                  .+|    +.....++|+|+++++.+++.|+.+++||......+.++|.
T Consensus       227 ~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG  306 (338)
T KOG0265|consen  227 YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG  306 (338)
T ss_pred             CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC
Confidence            99999999999887                  111    23457889999999999999999999999998888889988


Q ss_pred             cceeE
Q 043942          208 YSFKL  212 (216)
Q Consensus       208 ~~~~~  212 (216)
                      |...+
T Consensus       307 h~gsv  311 (338)
T KOG0265|consen  307 HYGSV  311 (338)
T ss_pred             cceeE
Confidence            76543

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.3e-28  Score=187.51  Aligned_cols=180  Identities=20%  Similarity=0.324  Sum_probs=146.6

Q ss_pred             EeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCc-------eEEEEeCCCCcc-----------------cCcE
Q 043942            9 EILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRN-------LQCTVEGPRGGI-----------------EDST   63 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~-------~~~~~~~~~~~~-----------------~~~~   63 (216)
                      .+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++.       .+..+.+|...+                 .|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 88999999999999999997652       345555554433                 7999


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC-e
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG-V  142 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v  142 (216)
                      |++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..               |... .
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~---------------H~~~~~  214 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA---------------HASAKS  214 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec---------------CCCCcc
Confidence            99999999999999999999999999999999999999999999999999988877765               5443 4


Q ss_pred             EEEEeCCCCcEEEEec----ccCeE---------------E-eeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEcccccc
Q 043942          143 TCLSWPGTSKYLVTGC----VDGKV---------------D-GHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEFRR  201 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~----~~~~i---------------~-~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~~~  201 (216)
                      ..+.|.+++..+++++    .|+.+               . .....+....|++++++|++++ .|+.|++||+.+++.
T Consensus       215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence            5678888887777654    35666               0 1123455567899999999887 499999999998775


Q ss_pred             ee
Q 043942          202 AT  203 (216)
Q Consensus       202 ~~  203 (216)
                      ..
T Consensus       295 ~~  296 (493)
T PTZ00421        295 TF  296 (493)
T ss_pred             EE
Confidence            44

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.9e-28  Score=165.74  Aligned_cols=179  Identities=26%  Similarity=0.429  Sum_probs=152.0

Q ss_pred             CceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCc---eEEEE-eCCCCcc----------------cCc
Q 043942            4 GDWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRN---LQCTV-EGPRGGI----------------EDS   62 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~---~~~~~-~~~~~~~----------------~~~   62 (216)
                      -..++.+++|.+.++.++|+|- |..||||+.|+.|++|+...+.   +...+ .+|...+                .|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            3467889999999999999997 8899999999999999998532   22222 1222222                799


Q ss_pred             EEEEEECCC--cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCc---eeEEeecccccccccceEEEee
Q 043942           63 TVWMWNADR--GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE---NFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        63 ~v~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ++.||.-..  .+++.++++|.+.|.|++|+++|++||++++|+.|.+|.+..+.   ....+..               
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~---------------  148 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE---------------  148 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc---------------
Confidence            999998764  46788999999999999999999999999999999999998553   3445554               


Q ss_pred             eecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      |...|..+.|+|...+|++++.|..|                 .+|...|.+++|++.|..|++++.|++++||...
T Consensus       149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            99999999999999999999999998                 6788899999999999999999999999999854

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2e-28  Score=173.72  Aligned_cols=212  Identities=30%  Similarity=0.498  Sum_probs=170.3

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV   64 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v   64 (216)
                      +.+|+...++.+|++.|.++.|+.+|.+||||+.+|.|+||+..++.....+......+                .||.+
T Consensus        93 ~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsv  172 (399)
T KOG0296|consen   93 ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSV  172 (399)
T ss_pred             ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcE
Confidence            35788899999999999999999999999999999999999999998877775322222                89999


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec------ccccccccceEEEe--
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR------SSLEFSLNYWMICT--  136 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~------~~~~~~~~~~~~~~--  136 (216)
                      .+|.+......+.+.+|+.++++-.|.|+|+.++++..||+|++||+.+++++..+..      ..+........+..  
T Consensus       173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence            9999999888899999999999999999999999999999999999999999887772      11111111111111  


Q ss_pred             ----------------------------eeecCeEEEEe---CCCCcEEEEecccCeE-------------EeeeCCEEE
Q 043942          137 ----------------------------SLYDGVTCLSW---PGTSKYLVTGCVDGKV-------------DGHIDAIQS  172 (216)
Q Consensus       137 ----------------------------~~~~~v~~~~~---~~~~~~l~~~~~~~~i-------------~~~~~~i~~  172 (216)
                                                  .+...+.++.+   +..=.+.|+|+-||.+             -.|..+|+.
T Consensus       253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~  332 (399)
T KOG0296|consen  253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK  332 (399)
T ss_pred             CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence                                        12223334443   4444567888889988             578889999


Q ss_pred             EEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942          173 LSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF  213 (216)
Q Consensus       173 ~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~  213 (216)
                      +.|-+ ..+|++++.+|.|+.||.++++.......|...++
T Consensus       333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il  372 (399)
T KOG0296|consen  333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL  372 (399)
T ss_pred             EEEcC-cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence            99988 78999999999999999999999888777765554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1e-29  Score=185.85  Aligned_cols=193  Identities=17%  Similarity=0.303  Sum_probs=158.9

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWM   66 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i   66 (216)
                      ++++++++.+|..+|.+++|+++|..|.+++.|+.+++||.++|+++..+.......                .|+.|+.
T Consensus       247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~  326 (503)
T KOG0282|consen  247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQ  326 (503)
T ss_pred             CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEE
Confidence            578999999999999999999999999999999999999999999888775432211                8999999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec------cccccccc----------
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR------SSLEFSLN----------  130 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~------~~~~~~~~----------  130 (216)
                      ||+++++.++.+..|-+.|..+.|-++++.++++++|+.+++|+.+.+-.+..+..      +.+...++          
T Consensus       327 wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d  406 (503)
T KOG0282|consen  327 WDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD  406 (503)
T ss_pred             EeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC
Confidence            99999999999999999999999999999999999999999999987754432221      11111110          


Q ss_pred             -ceEE--------------Eeee--ecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCC
Q 043942          131 -YWMI--------------CTSL--YDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIR  179 (216)
Q Consensus       131 -~~~~--------------~~~~--~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~  179 (216)
                       ....              +.+|  .+.-..+.|||||++|++|+.||.+              .+|.+++..+.|+|..
T Consensus       407 N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e  486 (503)
T KOG0282|consen  407 NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE  486 (503)
T ss_pred             ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence             0111              1112  3446678999999999999999998              7899999999999965


Q ss_pred             -CeEEEEeCCCcEEEEE
Q 043942          180 -ESLVSVSVDGTARVFE  195 (216)
Q Consensus       180 -~~l~s~~~d~~v~vw~  195 (216)
                       ..+|+|+.||.|++|+
T Consensus       487 ~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  487 PSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cceeEecccCceeEecC
Confidence             5789999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.6e-28  Score=187.16  Aligned_cols=125  Identities=26%  Similarity=0.478  Sum_probs=116.0

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      .-|.+-||+.+....+.+.++|...+++++++|||++++||+.||+|++||..++-+..+|..               |.
T Consensus       328 klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte---------------Ht  392 (893)
T KOG0291|consen  328 KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE---------------HT  392 (893)
T ss_pred             ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc---------------CC
Confidence            345777788777777778889999999999999999999999999999999999999999998               99


Q ss_pred             cCeEEEEeCCCCcEEEEecccCeE--------------------------------------------------------
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDGKV--------------------------------------------------------  163 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~~i--------------------------------------------------------  163 (216)
                      ..|+.+.|+..|+.+++++-||++                                                        
T Consensus       393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD  472 (893)
T KOG0291|consen  393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD  472 (893)
T ss_pred             CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee
Confidence            999999999999999999999988                                                        


Q ss_pred             --EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          164 --DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       164 --~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                        .+|+++|.+++|+|++..|+++|.|++||+||+-..
T Consensus       473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             hhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence              799999999999999999999999999999998765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.5e-27  Score=173.83  Aligned_cols=184  Identities=26%  Similarity=0.513  Sum_probs=161.2

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~   70 (216)
                      ++++++|.++|.+++|+|++++|++++.|+.+++|++.+++....+..+...+                .++.+++||++
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            45678999999999999999999999999999999999887766666655433                69999999999


Q ss_pred             CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      +++.+..+..|...+.++.|+|+++++++++.|+.+.+||+++++....+..               +...+.++.|+|+
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------~~~~i~~~~~~~~  146 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG---------------HTDWVNSVAFSPD  146 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc---------------CCCcEEEEEEcCc
Confidence            8888888888998999999999988999988899999999998887777765               7889999999999


Q ss_pred             CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          151 SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       151 ~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      +.++++++.++.+              ..|...+.+++|+|+++.+++++.|+.+++||+..++.....
T Consensus       147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence            9999988878876              456678999999999999999999999999999876665554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=1.2e-28  Score=170.79  Aligned_cols=180  Identities=28%  Similarity=0.473  Sum_probs=158.1

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC-CCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS-SRNLQCTVEGPRGGI----------------EDSTVWMWN   68 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~~----------------~~~~v~i~d   68 (216)
                      ++-.+.+|++.|+.+.|+|+|.+||||+.|..|.+|+.. ..+-...+.+|.+++                .|.+++.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            344567999999999999999999999999999999954 456666777888776                899999999


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      .++|+.++.+++|..-|+++.-+..| ..+.+++.|+++++||+++...++++.                ..-+++++.|
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----------------~kyqltAv~f  182 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----------------NKYQLTAVGF  182 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----------------cceeEEEEEe
Confidence            99999999999999999998854444 456788999999999999988888886                5678999999


Q ss_pred             CCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          148 PGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      ..++..+.+|+-|+.+              .+|..+|+.+..+|+|.++.+-+.|.++++||++...+
T Consensus       183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p  250 (338)
T KOG0265|consen  183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP  250 (338)
T ss_pred             cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence            9999999999999777              78999999999999999999999999999999987543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=190.80  Aligned_cols=182  Identities=25%  Similarity=0.381  Sum_probs=145.9

Q ss_pred             eEEee-ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE------------------------------------
Q 043942            7 ASEIL-GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ------------------------------------   49 (216)
Q Consensus         7 ~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~------------------------------------   49 (216)
                      .+.+. +|.+.|+++.||+||+|||+|+.|+.|+||.+...+..                                    
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            44556 89999999999999999999999999999987661110                                    


Q ss_pred             ------------------------EEEeCCCCcc---------------cCcEEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942           50 ------------------------CTVEGPRGGI---------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDF   90 (216)
Q Consensus        50 ------------------------~~~~~~~~~~---------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~   90 (216)
                                              +.+.+|...+               .|.+|++|++....++..|. |...|+|++|
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF  417 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF  417 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence                                    0000111111               89999999999999999998 9999999999


Q ss_pred             cC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE------
Q 043942           91 TT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------  163 (216)
Q Consensus        91 ~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------  163 (216)
                      +| |.+++++|+-|+++++|++...+.+.-..                ...-|++++|.|+|++.+.|+.+|..      
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----------------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~  481 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWND----------------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE  481 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEeehh----------------hhhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence            99 88999999999999999999776655444                55889999999999999999999987      


Q ss_pred             -----------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEcccccceeecC
Q 043942          164 -----------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       164 -----------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                                       ..|. .|+++.|.|... .++..+.|..|||+|.++...+.++.
T Consensus       482 ~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK  541 (712)
T KOG0283|consen  482 GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK  541 (712)
T ss_pred             CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence                             1233 799999998543 46666789999999997665554443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=7.5e-30  Score=180.57  Aligned_cols=176  Identities=19%  Similarity=0.396  Sum_probs=156.0

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWN   68 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d   68 (216)
                      +.++.+.|.||.+.|.|+.|.  .+.+++|+.|.+|++||.+++++++++-.|...+              .|.++.+||
T Consensus       226 ~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWd  303 (499)
T KOG0281|consen  226 SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWD  303 (499)
T ss_pred             cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEe
Confidence            345677888999999999995  4699999999999999999999999998888876              899999999


Q ss_pred             CCCcc---eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           69 ADRGA---YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        69 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      +....   ..+.+.+|...|+.+.|+  .+++++++.|++|++|++.++..+..+.+               |...|-|+
T Consensus       304 m~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~g---------------HkRGIACl  366 (499)
T KOG0281|consen  304 MASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNG---------------HKRGIACL  366 (499)
T ss_pred             ccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhc---------------ccccceeh
Confidence            98654   335678999999999996  56999999999999999999999999987               88889888


Q ss_pred             EeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          146 SWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      .+  .++++++|+.|..|              ++|+.-|.++.|  |.+.+++|+.||+|++||+.....
T Consensus       367 QY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aald  432 (499)
T KOG0281|consen  367 QY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD  432 (499)
T ss_pred             hc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccC
Confidence            75  57999999999998              899999999999  778899999999999999987553

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.8e-28  Score=187.39  Aligned_cols=193  Identities=22%  Similarity=0.332  Sum_probs=169.5

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC----ceEEEEeCCCCcc-----------------cCcEEEEE
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR----NLQCTVEGPRGGI-----------------EDSTVWMW   67 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~~-----------------~~~~v~i~   67 (216)
                      .+.||.+.|.++....+|.+|+||+.|.++++|.++++    .+++...+|...+                 .|+++++|
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence            67899999999997677889999999999999988543    2334445555544                 89999999


Q ss_pred             ECCCcce-----ee----eeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           68 NADRGAY-----LN----MFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        68 d~~~~~~-----~~----~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      ++...+.     ..    +...|...|++++++|+.++++|||.|++.++|++.+......+.+               |
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG---------------H  504 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG---------------H  504 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC---------------C
Confidence            9986221     11    2357999999999999999999999999999999998888888887               9


Q ss_pred             ecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      ...+.++.|+|..+.+++++.|.++              .+|...|..+.|-.+++.|++++.||.+++|++++.++...
T Consensus       505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t  584 (775)
T KOG0319|consen  505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT  584 (775)
T ss_pred             ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh
Confidence            9999999999999999999999998              78999999999999999999999999999999999999999


Q ss_pred             cCCcceeEEEeC
Q 043942          205 APSYSFKLFFLI  216 (216)
Q Consensus       205 ~~~~~~~~~~~~  216 (216)
                      +..|.-+++.|+
T Consensus       585 lD~H~DrvWaL~  596 (775)
T KOG0319|consen  585 LDAHNDRVWALS  596 (775)
T ss_pred             hhhccceeEEEe
Confidence            999998888763

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.4e-28  Score=172.50  Aligned_cols=177  Identities=20%  Similarity=0.324  Sum_probs=164.2

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN   68 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d   68 (216)
                      ++++.+.+|...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|..-+                .|.++++|-
T Consensus       184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~  263 (406)
T KOG0295|consen  184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV  263 (406)
T ss_pred             HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence            4566778999999999999999999999999999999999999999999888754                788999999


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCC---------------CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceE
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTD---------------GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWM  133 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  133 (216)
                      ..++++...++.|..+|.+++|.|.               +.++.+++.|++|++||+.++..+.++..           
T Consensus       264 ~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-----------  332 (406)
T KOG0295|consen  264 VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-----------  332 (406)
T ss_pred             eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec-----------
Confidence            9999999999999999999999874               25899999999999999999999999987           


Q ss_pred             EEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          134 ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                          |...|..++|+|.|+||+++.+|+.+              ..|..-+++++|+.+..++++|+-|.++++|.-
T Consensus       333 ----hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  333 ----HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ----ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence                99999999999999999999999998              678889999999999999999999999999963

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=1.8e-26  Score=168.23  Aligned_cols=192  Identities=23%  Similarity=0.398  Sum_probs=166.7

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWM   66 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i   66 (216)
                      +++....+..|...+..+.|+|+++++++++.|+.|++||+.+++....+..+...+                .++.+.+
T Consensus        40 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~  119 (289)
T cd00200          40 TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV  119 (289)
T ss_pred             CCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEE
Confidence            455667788899999999999999999999999999999999887777776655433                4999999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      ||+++++....+..|...+.+++|+|++.++++++.|+.+++||+++++....+..               +...+.++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---------------~~~~i~~~~  184 (289)
T cd00200         120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG---------------HTGEVNSVA  184 (289)
T ss_pred             EECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec---------------CccccceEE
Confidence            99999888888888999999999999999999988899999999998888777765               778999999


Q ss_pred             eCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          147 WPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      |+|+++.+++++.++.+              ..|...+.+++|+|++.++++++.|+.+++|++.+++....++.+.
T Consensus       185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~  261 (289)
T cd00200         185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT  261 (289)
T ss_pred             ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence            99999999999888887              3677799999999999899988889999999999877666655443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-27  Score=180.07  Aligned_cols=197  Identities=17%  Similarity=0.299  Sum_probs=149.9

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~   69 (216)
                      ..+++..|.+.|.++.++|...+++++-..|.|.||+.++...++.++....++                .|..|++|+.
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            345667799999999999999999999999999999999999999998776665                8999999999


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceeEEeeccc-----ccc----------------
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG-ENFHAIRRSS-----LEF----------------  127 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~-----~~~----------------  127 (216)
                      +|++.+..+.+|...|.+++.+|...+++|+|+|-.|++||.+.+ .+.+++.+..     +.+                
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            999999999999999999999999999999999999999999865 4455665500     000                


Q ss_pred             -------cccceEEEeeeecCeEEEEeCC--CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEE
Q 043942          128 -------SLNYWMICTSLYDGVTCLSWPG--TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVS  184 (216)
Q Consensus       128 -------~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s  184 (216)
                             ++.......+|...|+++.+-+  |..++++|++|..+              .+|...|..+.|+|.-..+++
T Consensus       165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis  244 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS  244 (794)
T ss_pred             EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence                   0000111223555555555533  22455555555554              677777888888887777788


Q ss_pred             EeCCCcEEEEEcccccce
Q 043942          185 VSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       185 ~~~d~~v~vw~~~~~~~~  202 (216)
                      ||+||++|||+..+.+..
T Consensus       245 gsEDGTvriWhs~Ty~lE  262 (794)
T KOG0276|consen  245 GSEDGTVRIWNSKTYKLE  262 (794)
T ss_pred             ecCCccEEEecCcceehh
Confidence            888888888877665543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=5.3e-27  Score=173.57  Aligned_cols=190  Identities=23%  Similarity=0.341  Sum_probs=158.9

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEE--EEeCCCCcc-------------------
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC--TVEGPRGGI-------------------   59 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~~-------------------   59 (216)
                      |++......+..|..+++-..|+|.|.|+|+|...|+|||||....+.+.  +++.-.+++                   
T Consensus        46 i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr  125 (603)
T KOG0318|consen   46 IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR  125 (603)
T ss_pred             CCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc
Confidence            34556667788999999999999999999999999999999987643322  222222211                   


Q ss_pred             ------------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942           60 ------------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI   97 (216)
Q Consensus        60 ------------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   97 (216)
                                                                .|++|.+|+-...+...+++.|..-|.|+.|+|||.++
T Consensus       126 erfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~F  205 (603)
T KOG0318|consen  126 ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRF  205 (603)
T ss_pred             cceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeE
Confidence                                                      66667777665555556677899999999999999999


Q ss_pred             EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------
Q 043942           98 CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------  163 (216)
Q Consensus        98 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------  163 (216)
                      ++++.||++.+||-.+++.+..+....            .|.+.|.++.|+||++.+++++.|..+              
T Consensus       206 at~gsDgki~iyDGktge~vg~l~~~~------------aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  206 ATAGSDGKIYIYDGKTGEKVGELEDSD------------AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             EEecCCccEEEEcCCCccEEEEecCCC------------CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence            999999999999999999999987411            299999999999999999999999876              


Q ss_pred             -------------------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          164 -------------------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       164 -------------------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                                                                 .+|...|+++..+|++++|++|+.||.|.-|+..++.
T Consensus       274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~  353 (603)
T KOG0318|consen  274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT  353 (603)
T ss_pred             ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence                                                       7899999999999999999999999999999998866


Q ss_pred             ce
Q 043942          201 RA  202 (216)
Q Consensus       201 ~~  202 (216)
                      .-
T Consensus       354 ~~  355 (603)
T KOG0318|consen  354 SD  355 (603)
T ss_pred             cc
Confidence            44

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=6.7e-28  Score=184.33  Aligned_cols=117  Identities=23%  Similarity=0.384  Sum_probs=106.8

Q ss_pred             CCCCceeEEeec-cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cC
Q 043942            1 INQGDWASEILG-HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------ED   61 (216)
Q Consensus         1 l~~g~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~   61 (216)
                      |.+|++++.+++ |.+||.-++|+|.+.+|++|+.|+.++|||+..+.+...+.++.+.+                  .|
T Consensus        91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D  170 (775)
T KOG0319|consen   91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD  170 (775)
T ss_pred             cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence            567889999998 99999999999999999999999999999999999999999988766                  89


Q ss_pred             cEEEEEECCCcce-eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee
Q 043942           62 STVWMWNADRGAY-LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF  117 (216)
Q Consensus        62 ~~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~  117 (216)
                      +.+++||+++... +..+..|.+.|++++|.+|+..++++++|..+.+||+.+.+..
T Consensus       171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l  227 (775)
T KOG0319|consen  171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKL  227 (775)
T ss_pred             ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhh
Confidence            9999999996554 7888999999999999999999999999999999999755443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=6.5e-27  Score=192.62  Aligned_cols=179  Identities=21%  Similarity=0.310  Sum_probs=151.3

Q ss_pred             CCCceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC----------c------ccCcEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----------G------IEDSTV   64 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----------~------~~~~~v   64 (216)
                      ++++.+..+.+|.+.|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+..          +      ..|+.|
T Consensus       563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I  642 (793)
T PLN00181        563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKV  642 (793)
T ss_pred             CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeE
Confidence            46778888999999999999997 789999999999999999999887776654321          0      078999


Q ss_pred             EEEECCCcc-eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC------ceeEEeecccccccccceEEEee
Q 043942           65 WMWNADRGA-YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG------ENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        65 ~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ++||+++.. ++..+.+|...|.++.|. ++..+++++.|+.|++||++.+      +.+..+..               
T Consensus       643 ~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g---------------  706 (793)
T PLN00181        643 YYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG---------------  706 (793)
T ss_pred             EEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC---------------
Confidence            999998765 567788999999999997 6789999999999999999753      33444544               


Q ss_pred             eecCeEEEEeCCCCcEEEEecccCeEE---------------------------eeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDGKVD---------------------------GHIDAIQSLSVSAIRESLVSVSVDGT  190 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~~i~---------------------------~~~~~i~~~~~~~~~~~l~s~~~d~~  190 (216)
                      |...+..++|+|++.+|++|+.|+.+.                           .+...|.+++|+|++.+|++++.||.
T Consensus       707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~  786 (793)
T PLN00181        707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN  786 (793)
T ss_pred             CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence            888899999999999999999999870                           12245899999999999999999999


Q ss_pred             EEEEEc
Q 043942          191 ARVFEI  196 (216)
Q Consensus       191 v~vw~~  196 (216)
                      |+||++
T Consensus       787 I~i~~~  792 (793)
T PLN00181        787 IKILEM  792 (793)
T ss_pred             EEEEec
Confidence            999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=8.6e-29  Score=167.99  Aligned_cols=180  Identities=25%  Similarity=0.392  Sum_probs=155.6

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeCCCCcc----------------cCcEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEGPRGGI----------------EDSTVW   65 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~----------------~~~~v~   65 (216)
                      +|..+.++. |+.-|..++|+.|.++|+||+.+..+||||++..+ +..++.+|..++                .+++|+
T Consensus        90 tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR  168 (334)
T KOG0278|consen   90 TGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR  168 (334)
T ss_pred             hhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence            455566664 88899999999999999999999999999998753 445666666655                899999


Q ss_pred             EEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           66 MWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        66 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      +||.+++..++++. .+..|+++.++++|++|.++ ..+.|.+||..+...+..++                -...|.+.
T Consensus       169 LWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k----------------~P~nV~SA  230 (334)
T KOG0278|consen  169 LWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK----------------MPCNVESA  230 (334)
T ss_pred             EEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc----------------Cccccccc
Confidence            99999999999988 56789999999999887665 45679999999998888887                46678899


Q ss_pred             EeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          146 SWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      .++|+..++++|++|..+               .+|.++|.++.|+|+|...++||+||+|++|.+..++.
T Consensus       231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            999999999999999887               67889999999999999999999999999999876553

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.8e-26  Score=158.13  Aligned_cols=171  Identities=23%  Similarity=0.372  Sum_probs=143.8

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--ceEEEEeCCCCcc----------------cCcEEEEEECCCc-
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--NLQCTVEGPRGGI----------------EDSTVWMWNADRG-   72 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~----------------~~~~v~i~d~~~~-   72 (216)
                      +|+..|.+++|+|.|++||++|.|.++.||.-..+  +++..+++|...+                .|..|-||.+..+ 
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence            69999999999999999999999999999998765  6788999999877                8999999998743 


Q ss_pred             --ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-C--ceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           73 --AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-G--ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        73 --~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                        .+...++.|...|..+.|+|...+|++++.|.+|++|+-.. .  ...+++..               |...|.+++|
T Consensus       139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g---------------~~~TVW~~~F  203 (312)
T KOG0645|consen  139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG---------------HENTVWSLAF  203 (312)
T ss_pred             cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC---------------ccceEEEEEe
Confidence              56778999999999999999999999999999999998773 2  45666665               6667777777


Q ss_pred             CCCCcEEEEecccCeE---------------------------------------------------------EeeeCCE
Q 043942          148 PGTSKYLVTGCVDGKV---------------------------------------------------------DGHIDAI  170 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i---------------------------------------------------------~~~~~~i  170 (216)
                      +|.|..|++++.|+.+                                                         ..|...|
T Consensus       204 ~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV  283 (312)
T KOG0645|consen  204 DNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV  283 (312)
T ss_pred             cCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence            7777777777777766                                                         5677788


Q ss_pred             EEEEEecC-CCeEEEEeCCCcEEEEEcc
Q 043942          171 QSLSVSAI-RESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       171 ~~~~~~~~-~~~l~s~~~d~~v~vw~~~  197 (216)
                      .++.|+|. .+.|++++.||.|++|.+.
T Consensus       284 NsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  284 NSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ceEEEcCCCCCceeecCCCceEEEEEec
Confidence            88888884 5678888888888888764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=179.85  Aligned_cols=185  Identities=25%  Similarity=0.444  Sum_probs=166.7

Q ss_pred             CCceeEE-eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEE
Q 043942            3 QGDWASE-ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMW   67 (216)
Q Consensus         3 ~g~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~   67 (216)
                      ++..+.. +.+|.+.|+++++..-+.+|++|+.|.++++||..++++...+.+|...+              .|.+|++|
T Consensus       237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW  316 (537)
T KOG0274|consen  237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVW  316 (537)
T ss_pred             cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEE
Confidence            4566666 99999999999999877899999999999999999999999999988866              79999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      ++++++.+..+.+|.++|.++..+  +.++++|+.|++|++||+.+++.+..+..               |...|+++.+
T Consensus       317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g---------------H~~~V~sl~~  379 (537)
T KOG0274|consen  317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG---------------HTGRVYSLIV  379 (537)
T ss_pred             eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC---------------CcceEEEEEe
Confidence            999999999999999999999997  88999999999999999999999999998               9999999988


Q ss_pred             CCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          148 PGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      .+. ..+++|+.|+.|               .+|..-+..+.+  .+++|++++.|++|++||..++++...+..
T Consensus       380 ~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  380 DSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             cCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence            776 899999999977               455555644444  778999999999999999999998887766

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=7.2e-26  Score=176.41  Aligned_cols=180  Identities=16%  Similarity=0.186  Sum_probs=138.2

Q ss_pred             ceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCc--------eEEEEeCCCCcc----------------
Q 043942            5 DWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRN--------LQCTVEGPRGGI----------------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~--------~~~~~~~~~~~~----------------   59 (216)
                      .++..+.+|.+.|.+++|+|+ +++|++|+.|+.|++||+.++.        .+..+.+|...+                
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            456788999999999999996 7899999999999999997642        223445544432                


Q ss_pred             -cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           60 -EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        60 -~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                       .|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+..+..               |
T Consensus       145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g---------------H  208 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI---------------H  208 (568)
T ss_pred             eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec---------------c
Confidence             68999999999998777776 667899999999999999999999999999999998887765               6


Q ss_pred             ecCeEE-----EEeCCCCcEEEEecccC----eE--------------EeeeC---CEEEEEEecCCCeEEEEeCCCcEE
Q 043942          139 YDGVTC-----LSWPGTSKYLVTGCVDG----KV--------------DGHID---AIQSLSVSAIRESLVSVSVDGTAR  192 (216)
Q Consensus       139 ~~~v~~-----~~~~~~~~~l~~~~~~~----~i--------------~~~~~---~i~~~~~~~~~~~l~s~~~d~~v~  192 (216)
                      .+.+..     ..|++++.++++++.++    .+              ..+..   .+......+++.++++|+.|+.|+
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr  288 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR  288 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence            554332     34568889988877664    34              11111   122222234588899999999999


Q ss_pred             EEEccccc
Q 043942          193 VFEIAEFR  200 (216)
Q Consensus       193 vw~~~~~~  200 (216)
                      +|++..+.
T Consensus       289 ~~e~~~~~  296 (568)
T PTZ00420        289 YYQHSLGS  296 (568)
T ss_pred             EEEccCCc
Confidence            99997653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=6.1e-26  Score=186.90  Aligned_cols=172  Identities=20%  Similarity=0.422  Sum_probs=143.5

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC----c----eEEEEeCCC-----------Cc-c----cCcEEE
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR----N----LQCTVEGPR-----------GG-I----EDSTVW   65 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----~----~~~~~~~~~-----------~~-~----~~~~v~   65 (216)
                      +..|.+.|.+++|+|+|++||+|+.|+.|++||....    .    ....+..+.           .. +    .|++|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            3458999999999999999999999999999997542    1    111111111           00 1    699999


Q ss_pred             EEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942           66 MWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        66 i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      +||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|+.|++||++++..+..+.                ....+.+
T Consensus       559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~----------------~~~~v~~  622 (793)
T PLN00181        559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK----------------TKANICC  622 (793)
T ss_pred             EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe----------------cCCCeEE
Confidence            999999999999999999999999997 78999999999999999999988877765                3357889


Q ss_pred             EEeC-CCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          145 LSWP-GTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       145 ~~~~-~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      +.|+ +++.++++|+.|+.+               .+|...|..+.|. ++.+|++++.|++|++||+..
T Consensus       623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            9994 579999999999987               4577899999996 788999999999999999974

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.8e-28  Score=170.79  Aligned_cols=198  Identities=16%  Similarity=0.280  Sum_probs=156.8

Q ss_pred             eeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cC---------
Q 043942            6 WASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------ED---------   61 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~---------   61 (216)
                      .+..|.+|.+.|.|++=+|.. ..+++|+.||.|++||+...++..+++.|.+.+              .|         
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeecc
Confidence            456788999999999999976 789999999999999999999999998888644              33         


Q ss_pred             -----------------------------cEEEEEECCCcceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeC
Q 043942           62 -----------------------------STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNP  111 (216)
Q Consensus        62 -----------------------------~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~  111 (216)
                                                   -.|.|||.+...++..+.--...|.++.|+|.. ..|++|..|+.|.+||+
T Consensus       138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~  217 (433)
T KOG0268|consen  138 GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL  217 (433)
T ss_pred             CCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence                                         345566666666666666556678999999954 56777889999999999


Q ss_pred             CCCceeEEee----cccccccccceEEE-----------------------eeeecCeEEEEeCCCCcEEEEecccCeE-
Q 043942          112 KGGENFHAIR----RSSLEFSLNYWMIC-----------------------TSLYDGVTCLSWPGTSKYLVTGCVDGKV-  163 (216)
Q Consensus       112 ~~~~~~~~~~----~~~~~~~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~l~~~~~~~~i-  163 (216)
                      +++.+++.+.    .+.+.++++.+...                       .+|...|.++.|+|.|+.+++|+.|..| 
T Consensus       218 R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR  297 (433)
T KOG0268|consen  218 RQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR  297 (433)
T ss_pred             ccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEE
Confidence            9987765443    34444444333222                       2277789999999999999999999998 


Q ss_pred             --------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          164 --------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       164 --------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                                    ....+.|.++.||.|.+|+++||.|+.|++|.....+.+.
T Consensus       298 If~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  298 IFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence                          2224679999999999999999999999999987665543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=6.8e-28  Score=169.55  Aligned_cols=183  Identities=22%  Similarity=0.367  Sum_probs=159.8

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--------CCcc----------------cCcEEEEE
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--------RGGI----------------EDSTVWMW   67 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--------~~~~----------------~~~~v~i~   67 (216)
                      +.+..+.|..|+|||++|++|+.||.|.+||..+|+..+.++-.        ..++                .||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            34567889999999999999999999999999999766554322        1111                89999999


Q ss_pred             ECCCcceeeeee-ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           68 NADRGAYLNMFS-GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        68 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      .+++|.+++.+. +|...|+|+.|+.|+..+++++.|.++++--+++|+.+.++.+               |...|+...
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG---------------HsSyvn~a~  355 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG---------------HSSYVNEAT  355 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC---------------ccccccceE
Confidence            999999999987 8999999999999999999999999999999999999999998               999999999


Q ss_pred             eCCCCcEEEEecccCeE-------------------------------------------------------------Ee
Q 043942          147 WPGTSKYLVTGCVDGKV-------------------------------------------------------------DG  165 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i-------------------------------------------------------------~~  165 (216)
                      |.++|.++++++.||.+                                                             ..
T Consensus       356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkR  435 (508)
T KOG0275|consen  356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKR  435 (508)
T ss_pred             EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCc
Confidence            99999999999999988                                                             11


Q ss_pred             eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          166 HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       166 ~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      ..+...+++.+|.|.++.+.++|+.++.|.+.+++....++.+.
T Consensus       436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE  479 (508)
T KOG0275|consen  436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE  479 (508)
T ss_pred             cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence            23456677899999999999999999999999988777666543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=8.6e-27  Score=175.66  Aligned_cols=184  Identities=22%  Similarity=0.314  Sum_probs=153.4

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC-CCCcc--------------cCcEEEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-PRGGI--------------EDSTVWMW   67 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~~--------------~~~~v~i~   67 (216)
                      +++.......+.+.|+++.|+++|++||+|..+|.|.|||..+.+.+..+.. |...+              .++.|..+
T Consensus       206 s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~  285 (484)
T KOG0305|consen  206 SGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNH  285 (484)
T ss_pred             CCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEE
Confidence            3443444444578999999999999999999999999999999998888888 65544              89999999


Q ss_pred             ECCCcceeee-eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           68 NADRGAYLNM-FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        68 d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      |++..+.... +.+|...|..++|++|++++|+|+.|+.+.+||.....+...+..               |...|.+++
T Consensus       286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~---------------H~aAVKA~a  350 (484)
T KOG0305|consen  286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE---------------HTAAVKALA  350 (484)
T ss_pred             EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec---------------cceeeeEee
Confidence            9998766555 889999999999999999999999999999999987777777776               667777777


Q ss_pred             eCC-CCcEEEEecc--cCeE---------------------------------------------------------Eee
Q 043942          147 WPG-TSKYLVTGCV--DGKV---------------------------------------------------------DGH  166 (216)
Q Consensus       147 ~~~-~~~~l~~~~~--~~~i---------------------------------------------------------~~~  166 (216)
                      |+| ....||+|+.  |+.+                                                         .+|
T Consensus       351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH  430 (484)
T KOG0305|consen  351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH  430 (484)
T ss_pred             eCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC
Confidence            776 4455665533  4444                                                         789


Q ss_pred             eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          167 IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       167 ~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      ...|..++++|||..+++++.|.++++|++-+..+
T Consensus       431 ~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~  465 (484)
T KOG0305|consen  431 TSRVLYLALSPDGETIVTGAADETLRFWNLFDERP  465 (484)
T ss_pred             cceeEEEEECCCCCEEEEecccCcEEeccccCCCC
Confidence            99999999999999999999999999999987433

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.8e-27  Score=160.82  Aligned_cols=177  Identities=18%  Similarity=0.260  Sum_probs=154.1

Q ss_pred             ceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEE
Q 043942            5 DWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWM   66 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i   66 (216)
                      .+++.++.|+.+|.++.|++ +++.++++|.|++|++|+...++.+.++.+|...+                 .|+++++
T Consensus        95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l  174 (311)
T KOG0277|consen   95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL  174 (311)
T ss_pred             cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence            57888999999999999999 56778899999999999999999999999988876                 8999999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEeeeecCeEE
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      ||++..-....+..|...+.++.|+. +.+.++||+.|+.|+.||+++-+ ++.++..               |.-.|+.
T Consensus       175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g---------------h~~AVRk  239 (311)
T KOG0277|consen  175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG---------------HGLAVRK  239 (311)
T ss_pred             EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC---------------CceEEEE
Confidence            99986544445889999999999998 67789999999999999999754 4555554               9999999


Q ss_pred             EEeCCCC-cEEEEecccCeE---------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEc
Q 043942          145 LSWPGTS-KYLVTGCVDGKV---------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       145 ~~~~~~~-~~l~~~~~~~~i---------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~  196 (216)
                      ++|+|.. ..|++++.|-++               ..|..-+..+.|++ ++.++|+++.|..++||+.
T Consensus       240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999954 678899998877               56788899999998 5678999999999999984

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=160.22  Aligned_cols=191  Identities=19%  Similarity=0.272  Sum_probs=149.0

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMW   67 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~   67 (216)
                      ++..+.+|.++|++++.+  +.++|+|+.|.+|+|||+.....+..+-.|.+.+                  .||.|.+|
T Consensus        35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            355677899999999995  7899999999999999999998888877776655                  89999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccc----cccccc--eEEEee----
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL----EFSLNY--WMICTS----  137 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~----~~~~~~--~~~~~~----  137 (216)
                      +......+..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-+|+.....+....    .+.+++  +.+...    
T Consensus       113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~  192 (362)
T KOG0294|consen  113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKID  192 (362)
T ss_pred             EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEE
Confidence            9999999999999999999999999999999999999999999998876555443211    111111  111100    


Q ss_pred             --------------eecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEE--ecCCCeEEEEeC
Q 043942          138 --------------LYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSV--SAIRESLVSVSV  187 (216)
Q Consensus       138 --------------~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~--~~~~~~l~s~~~  187 (216)
                                    .+..+.++.|- ++..+++|.+|+.+              .+|..+|-++.+  .|++.+|+|+|.
T Consensus       193 i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS  271 (362)
T KOG0294|consen  193 IYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS  271 (362)
T ss_pred             EEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence                          11123333332 45667777777766              789999999884  467889999999


Q ss_pred             CCcEEEEEcccc
Q 043942          188 DGTARVFEIAEF  199 (216)
Q Consensus       188 d~~v~vw~~~~~  199 (216)
                      ||.|+|||++..
T Consensus       272 DG~I~vWd~~~~  283 (362)
T KOG0294|consen  272 DGFIKVWDIDME  283 (362)
T ss_pred             CceEEEEEcccc
Confidence            999999999865

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.9e-27  Score=158.42  Aligned_cols=175  Identities=22%  Similarity=0.366  Sum_probs=149.7

Q ss_pred             cccceEEEEEccC-CCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcc-----------------cCcEEEEEECCCcc
Q 043942           13 HKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGI-----------------EDSTVWMWNADRGA   73 (216)
Q Consensus        13 h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~~   73 (216)
                      -.+.+..++|++. .+.+++++.||++++||+... .++..++.|...+                 .|++|++|+...++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            3567899999995 468889999999999996543 5666666666655                 89999999999999


Q ss_pred             eeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC-CC
Q 043942           74 YLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TS  151 (216)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  151 (216)
                      .+.++.+|...|...+|+| .++.+++++.|+++++||++.......++.               |..++.++.|+. +.
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a---------------h~~Eil~cdw~ky~~  203 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA---------------HNSEILCCDWSKYNH  203 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe---------------ccceeEeecccccCC
Confidence            9999999999999999999 678999999999999999997554445766               889999999987 66


Q ss_pred             cEEEEecccCeE---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEcccccce
Q 043942          152 KYLVTGCVDGKV---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       152 ~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      +.+++|+.|+.+               .+|.-.|..++|||.. ..|++++.|-+++|||...+...
T Consensus       204 ~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~  270 (311)
T KOG0277|consen  204 NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA  270 (311)
T ss_pred             cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence            789999999988               6888999999999975 68899999999999999865443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=1.1e-25  Score=164.62  Aligned_cols=184  Identities=21%  Similarity=0.304  Sum_probs=163.4

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeee
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~   78 (216)
                      ..|++++|+.+|..||+|+.||.+++|+.. +..+.++..|..++                -|+++.+||..++...+.+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence            579999999999999999999999999975 45555566666555                7999999999999999999


Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                      .-|..+-..+.|-. ...+++++.|+.|+|+.+....++.++..               |..+|.++.|+|.+.+|++++
T Consensus       315 ~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~G---------------H~g~V~alk~n~tg~LLaS~S  378 (524)
T KOG0273|consen  315 EFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIG---------------HHGEVNALKWNPTGSLLASCS  378 (524)
T ss_pred             eeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeec---------------ccCceEEEEECCCCceEEEec
Confidence            98988777899975 45788999999999999998899999987               999999999999999999999


Q ss_pred             ccCeE--------------EeeeCCEEEEEEecCC---------CeEEEEeCCCcEEEEEcccccceeecCCcceeEEEe
Q 043942          159 VDGKV--------------DGHIDAIQSLSVSAIR---------ESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL  215 (216)
Q Consensus       159 ~~~~i--------------~~~~~~i~~~~~~~~~---------~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~  215 (216)
                      .|+++              .+|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+..|.-++|.+
T Consensus       379 dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysv  458 (524)
T KOG0273|consen  379 DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSV  458 (524)
T ss_pred             CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEE
Confidence            99998              7889999999999965         478999999999999999999999988888877754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=6.9e-26  Score=161.69  Aligned_cols=195  Identities=19%  Similarity=0.315  Sum_probs=163.2

Q ss_pred             CCceeEEeeccccceEEEEEccCC---CEEEEEcCCCcEEEEECCCCceE----EEEeCCCCcc----------------
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDG---QLLASGGFHGLVQNRDTSSRNLQ----CTVEGPRGGI----------------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~----------------   59 (216)
                      .|+.+.++.+|.++|.+++|-...   ..|++++.|.++++|..+.++..    +...+|...+                
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS  212 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS  212 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence            588899999999999988886533   36999999999999998876432    2334666554                


Q ss_pred             cCcEEEEEECC-------------------------CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 043942           60 EDSTVWMWNAD-------------------------RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG  114 (216)
Q Consensus        60 ~~~~v~i~d~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~  114 (216)
                      .|..+.+|+..                         ++.++..+.+|..+|.++.|++ ...+.+++.|++|+.||+.++
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence            89999999932                         1235667889999999999998 678999999999999999999


Q ss_pred             ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEec
Q 043942          115 ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSA  177 (216)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~  177 (216)
                      .....+.                .....+++..+|...+|++|+.|..+                 .+|.+.|.++.|+|
T Consensus       292 ~~~~~~~----------------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp  355 (423)
T KOG0313|consen  292 GLKSTLT----------------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP  355 (423)
T ss_pred             cceeeee----------------cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence            9888887                56788999999999999999999877                 78999999999999


Q ss_pred             CCC-eEEEEeCCCcEEEEEccccc-ceeecCCcceeEEE
Q 043942          178 IRE-SLVSVSVDGTARVFEIAEFR-RATKAPSYSFKLFF  214 (216)
Q Consensus       178 ~~~-~l~s~~~d~~v~vw~~~~~~-~~~~~~~~~~~~~~  214 (216)
                      ... +|++++.|+++++||+++.+ ++..+..|.-++|.
T Consensus       356 ~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~  394 (423)
T KOG0313|consen  356 TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS  394 (423)
T ss_pred             CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE
Confidence            764 67899999999999999977 77777777766654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.8e-26  Score=177.14  Aligned_cols=181  Identities=25%  Similarity=0.302  Sum_probs=158.2

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC-----CceE--------EEEeCCCCcc----------
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-----RNLQ--------CTVEGPRGGI----------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-----~~~~--------~~~~~~~~~~----------   59 (216)
                      +...+-+.++|.+.|++++.+||++.++|||.|.+|++||..-     +...        ++++......          
T Consensus       443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            3455667789999999999999999999999999999999742     1111        1222211111          


Q ss_pred             -----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEE
Q 043942           60 -----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI  134 (216)
Q Consensus        60 -----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  134 (216)
                           -|++|++|-+.+-+....+.||.-+|.|+..+||++.++||+.|+.|++|-++=|.+-..+..            
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA------------  590 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA------------  590 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc------------
Confidence                 799999999999999999999999999999999999999999999999999999998888877            


Q ss_pred             EeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          135 CTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                         |.+.|.++.|-|+...+++++.|+.+              .+|...|++++.+|+|.+++++|.|.+|++|.-..
T Consensus       591 ---HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  591 ---HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ---ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence               99999999999999999999999999              78999999999999999999999999999998644

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=1.1e-25  Score=159.94  Aligned_cols=160  Identities=21%  Similarity=0.345  Sum_probs=141.7

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCe
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGL   85 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v   85 (216)
                      -+.+|..|+++|++++.+|+.++++||+.|....+|+                          +.++.....+.+|...|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~--------------------------~~~ge~~~eltgHKDSV  109 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWD--------------------------ISTGEFAGELTGHKDSV  109 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEE--------------------------ccCCcceeEecCCCCce
Confidence            4568899999999999999999999999666555555                          45555666788999999


Q ss_pred             eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942           86 TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--  163 (216)
Q Consensus        86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--  163 (216)
                      +++.|+.+|.+||||..+|.|++|+..++.....+..               ....+.=+.|+|.+.+|+.|+.||.+  
T Consensus       110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~---------------e~~dieWl~WHp~a~illAG~~DGsvWm  174 (399)
T KOG0296|consen  110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ---------------EVEDIEWLKWHPRAHILLAGSTDGSVWM  174 (399)
T ss_pred             EEEEEccCceEEEecCCCccEEEEEcccCceEEEeec---------------ccCceEEEEecccccEEEeecCCCcEEE
Confidence            9999999999999999999999999999988877764               56778889999999999999999998  


Q ss_pred             ------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          164 ------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       164 ------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                                  .+|..++++-.|.|+|+.++++..||+|++|+.+++++..++.
T Consensus       175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence                        6899999999999999999999999999999999998776543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=3.1e-25  Score=151.94  Aligned_cols=179  Identities=21%  Similarity=0.359  Sum_probs=159.6

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCc
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRG   72 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~   72 (216)
                      .+++|..+++.+.++.+|.+|.+|+.|.+..||-..+|+.+.++.+|.+.+                .|.++++||+++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            478999999999999999999999999999999999999999999999987                8999999999999


Q ss_pred             ceeeeeeccCCCeeEEEEcCCCcEEEEecC-----CCeEEEEeCCCC-------ceeEEeecccccccccceEEEeeeec
Q 043942           73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSD-----NATLSIWNPKGG-------ENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-----d~~i~~wd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      +.+..++ ...+|..+.|+++|++++....     .+.|.++|++..       .+...+..               +..
T Consensus        85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t---------------~~s  148 (327)
T KOG0643|consen   85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT---------------PDS  148 (327)
T ss_pred             cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---------------Ccc
Confidence            9999998 5678999999999998877653     466999999833       33444444               678


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      .++.+.|.|-+.+|++|.++|.|               ..|...|+++.++|+..++++++.|.+-++||..+.+.+.
T Consensus       149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K  226 (327)
T KOG0643|consen  149 KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK  226 (327)
T ss_pred             ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence            89999999999999999999998               5788899999999999999999999999999998876553

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=1e-25  Score=163.77  Aligned_cols=178  Identities=18%  Similarity=0.336  Sum_probs=149.8

Q ss_pred             eeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCc-------eEEEEeCCCCcc-----------------c
Q 043942            6 WASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRN-------LQCTVEGPRGGI-----------------E   60 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~-------~~~~~~~~~~~~-----------------~   60 (216)
                      +-.+|.+|.+.=++++|++.. -.|++++.|+.|++||+....       ....+.+|...+                 .
T Consensus       169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d  248 (422)
T KOG0264|consen  169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD  248 (422)
T ss_pred             CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence            445789999978899999954 579999999999999997643       234556666655                 8


Q ss_pred             CcEEEEEECC--CcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEe
Q 043942           61 DSTVWMWNAD--RGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICT  136 (216)
Q Consensus        61 ~~~v~i~d~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~  136 (216)
                      |+.+.|||++  +.++.....+|.+.|.|++|+| ++..||||+.|++|++||+|+.. .+..+..              
T Consensus       249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~--------------  314 (422)
T KOG0264|consen  249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG--------------  314 (422)
T ss_pred             CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC--------------
Confidence            9999999999  5666777889999999999999 66788999999999999999764 4566666              


Q ss_pred             eeecCeEEEEeCCCC-cEEEEecccCeE----------------------------EeeeCCEEEEEEecCCCe-EEEEe
Q 043942          137 SLYDGVTCLSWPGTS-KYLVTGCVDGKV----------------------------DGHIDAIQSLSVSAIRES-LVSVS  186 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~-~~l~~~~~~~~i----------------------------~~~~~~i~~~~~~~~~~~-l~s~~  186 (216)
                       |.+.|.++.|+|.. ..|++++.|+.+                            .+|...|..+.|+|+..+ +++.+
T Consensus       315 -H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  315 -HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             -CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence             99999999999965 578888999987                            688899999999999875 56788


Q ss_pred             CCCcEEEEEccc
Q 043942          187 VDGTARVFEIAE  198 (216)
Q Consensus       187 ~d~~v~vw~~~~  198 (216)
                      .|+.+.||+...
T Consensus       394 eDN~LqIW~~s~  405 (422)
T KOG0264|consen  394 EDNILQIWQMAE  405 (422)
T ss_pred             CCceEEEeeccc
Confidence            999999999873

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-24  Score=146.43  Aligned_cols=174  Identities=20%  Similarity=0.339  Sum_probs=146.2

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce-----EEEEeCCCCcc------------------------
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL-----QCTVEGPRGGI------------------------   59 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~------------------------   59 (216)
                      .-+.|++.|+|.+|+|+|+++++|+.|.+|++.-++....     ..++..|.+.+                        
T Consensus        84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            3457999999999999999999999999999876543211     01122222111                        


Q ss_pred             --------------------------------------cCcEEEEEECCCcceeeeeec--c-----CCCeeEEEEcCCC
Q 043942           60 --------------------------------------EDSTVWMWNADRGAYLNMFSG--H-----GSGLTCGDFTTDG   94 (216)
Q Consensus        60 --------------------------------------~~~~v~i~d~~~~~~~~~~~~--~-----~~~v~~~~~~~~~   94 (216)
                                                            .|.+|++||++-..++.++..  |     ...|.+++..|.|
T Consensus       164 ~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg  243 (350)
T KOG0641|consen  164 KIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG  243 (350)
T ss_pred             eEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence                                                  899999999998877776542  2     2579999999999


Q ss_pred             cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------
Q 043942           95 KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------  163 (216)
Q Consensus        95 ~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------  163 (216)
                      ++|++|..|....+||++.++.++.+..               |...|.++.|+|...++++++.|..|           
T Consensus       244 rll~sg~~dssc~lydirg~r~iq~f~p---------------hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~  308 (350)
T KOG0641|consen  244 RLLASGHADSSCMLYDIRGGRMIQRFHP---------------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH  308 (350)
T ss_pred             ceeeeccCCCceEEEEeeCCceeeeeCC---------------CccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence            9999999999999999999999999988               99999999999999999999999988           


Q ss_pred             -------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          164 -------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       164 -------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                             ..|...+..+.|+|..--+++.+.|+++.+|-+.
T Consensus       309 el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  309 ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence                   6788889999999999889999999999999764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.9e-25  Score=152.54  Aligned_cols=165  Identities=21%  Similarity=0.217  Sum_probs=143.4

Q ss_pred             EeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------------------
Q 043942            9 EILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------------------   59 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------------------   59 (216)
                      ..++|.+.|-.++|+| ....|++++.|.+|++||.+.+++...+....+.+                            
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~  138 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTY  138 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence            3458999999999998 45799999999999999999998887776543322                            


Q ss_pred             ----------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeC
Q 043942           60 ----------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNP  111 (216)
Q Consensus        60 ----------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~  111 (216)
                                                  ..|+|.|.....-+++..+++|.....|+.|+|+|+++|+|+.|..+.+||+
T Consensus       139 ~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~  218 (313)
T KOG1407|consen  139 KIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV  218 (313)
T ss_pred             ceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence                                        4477777777777888899999999999999999999999999999999999


Q ss_pred             CCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecC
Q 043942          112 KGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAI  178 (216)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~  178 (216)
                      ...-+...+..               +.-+|+.+.|+.+|++||++++|..|             ..+.++...++|+|.
T Consensus       219 ~ELiC~R~isR---------------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk  283 (313)
T KOG1407|consen  219 DELICERCISR---------------LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK  283 (313)
T ss_pred             hHhhhheeecc---------------ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC
Confidence            98888888876               88999999999999999999999988             566788999999999


Q ss_pred             CCeEEEEeCC
Q 043942          179 RESLVSVSVD  188 (216)
Q Consensus       179 ~~~l~s~~~d  188 (216)
                      ..+||-+..|
T Consensus       284 ~~LLAyA~dd  293 (313)
T KOG1407|consen  284 RPLLAYACDD  293 (313)
T ss_pred             CceeeEEecC
Confidence            9999866554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.3e-26  Score=165.44  Aligned_cols=178  Identities=21%  Similarity=0.327  Sum_probs=153.5

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG   72 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~   72 (216)
                      +--.++.|+++.|..||++||+|+..|.|+|+|+.+...+..+..|+.++                 .|+.+++||+.+.
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence            33456789999999999999999999999999988766666666666655                 7889999999998


Q ss_pred             ceeeeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           73 AYLNMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      .....+.+|+..|.|.+|+|. +..++||+.||+|++||++.. ..+.++.                |..+|..+.+-|.
T Consensus       144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln----------------hg~pVe~vl~lps  207 (487)
T KOG0310|consen  144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN----------------HGCPVESVLALPS  207 (487)
T ss_pred             EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec----------------CCCceeeEEEcCC
Confidence            876689999999999999994 558899999999999999977 5566666                8999999999999


Q ss_pred             CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          151 SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       151 ~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      |..+++++.+..-              ..|...|+++++..++..|++++.|+.|++||+.+.+...
T Consensus       208 gs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~  274 (487)
T KOG0310|consen  208 GSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH  274 (487)
T ss_pred             CCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence            9999998776432              4499999999999999999999999999999987776554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=4.5e-25  Score=150.68  Aligned_cols=185  Identities=17%  Similarity=0.289  Sum_probs=155.1

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEE--eCCCCcc-----------------cCcEEEEEE
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV--EGPRGGI-----------------EDSTVWMWN   68 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~~-----------------~~~~v~i~d   68 (216)
                      +.+++|.+.|.+++|+.+|..|++++.|+++.+|+++..+....+  .+|...+                 .|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            456789999999999999999999999999999999877554433  3344322                 899999999


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      ++.++++.......+. .-+.|+|+|.+++.++.|..|.+.|.++.+.....+                ....+..++|+
T Consensus        94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~----------------~~~e~ne~~w~  156 (313)
T KOG1407|consen   94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ----------------FKFEVNEISWN  156 (313)
T ss_pred             eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc----------------ccceeeeeeec
Confidence            9999999888755444 468899999999999999999999999888777665                56678889999


Q ss_pred             CCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          149 GTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       149 ~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      .++.+++.....|.+              .+|.....++.|+|+|+|||+|+.|-.+.+||+.+.-+...++...
T Consensus       157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld  231 (313)
T KOG1407|consen  157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD  231 (313)
T ss_pred             CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc
Confidence            888888877777877              7899999999999999999999999999999999876665554433

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=8.9e-25  Score=173.47  Aligned_cols=197  Identities=24%  Similarity=0.312  Sum_probs=154.2

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC------------------CceEEEEeCCCCcc-------
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS------------------RNLQCTVEGPRGGI-------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~------------------~~~~~~~~~~~~~~-------   59 (216)
                      +.+.++..|.+.|+|+.|+|||++||+|+.|+.|.||+...                  .+....+.+|...+       
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            45667788999999999999999999999999999999873                  13566777887766       


Q ss_pred             ---------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc------
Q 043942           60 ---------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS------  124 (216)
Q Consensus        60 ---------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~------  124 (216)
                               .|++|.+||..+...+..+++|.+.|..+.|.|-|+++|+-+.|++|++|++.+....+.+...-      
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~  219 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT  219 (942)
T ss_pred             CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence                     89999999999999999999999999999999999999999999999999987755554444310      


Q ss_pred             -----cccccc-----------------------ce---EEEeeeecCeEEEEeCCC-----Cc------------EEEE
Q 043942          125 -----LEFSLN-----------------------YW---MICTSLYDGVTCLSWPGT-----SK------------YLVT  156 (216)
Q Consensus       125 -----~~~~~~-----------------------~~---~~~~~~~~~v~~~~~~~~-----~~------------~l~~  156 (216)
                           +..++.                       .+   ....+|..++.++.|+|.     ..            .+|+
T Consensus       220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av  299 (942)
T KOG0973|consen  220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV  299 (942)
T ss_pred             ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence                 011111                       11   122348888888888761     11            5677


Q ss_pred             ecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          157 GCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       157 ~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      |+.|+.+               .-....|.+++|+|||..|++||.||+|.+..+++.+.
T Consensus       300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  300 GSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             ecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence            8888887               23356788888888888888888888888888876543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.4e-25  Score=161.49  Aligned_cols=186  Identities=26%  Similarity=0.363  Sum_probs=156.8

Q ss_pred             eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcce
Q 043942           11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAY   74 (216)
Q Consensus        11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~   74 (216)
                      ++|...+.+++.++||+|||+|+.|..|.||+..+++.++.+.+|...+                .|+.|++|+++....
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            4899999999999999999999999999999999999999999998877                899999999999989


Q ss_pred             eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      +.++.+|...|..+.....++.+.+|+.|+++++|++.. .....+..               +.+.+-|++|-. ..++
T Consensus       279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg---------------~~~sidcv~~In-~~Hf  341 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRG---------------GEGSIDCVAFIN-DEHF  341 (479)
T ss_pred             HHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeC---------------CCCCeeeEEEec-ccce
Confidence            999999999999999988888888899999999999953 33334444               777888998854 4678


Q ss_pred             EEecccCeE---------------Ee-----------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc-ceeecCC
Q 043942          155 VTGCVDGKV---------------DG-----------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR-RATKAPS  207 (216)
Q Consensus       155 ~~~~~~~~i---------------~~-----------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~-~~~~~~~  207 (216)
                      ++|+.+|.|               .+           +..+|++++..|...++++|+.+|.|++|.+.++- .+..+.+
T Consensus       342 vsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~  421 (479)
T KOG0299|consen  342 VSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS  421 (479)
T ss_pred             eeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee
Confidence            999999998               11           22389999999999999999999999999999863 3333333


Q ss_pred             cceeEE
Q 043942          208 YSFKLF  213 (216)
Q Consensus       208 ~~~~~~  213 (216)
                      .++..|
T Consensus       422 ls~~Gf  427 (479)
T KOG0299|consen  422 LSLVGF  427 (479)
T ss_pred             cccccE
Confidence            444433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=2.1e-25  Score=165.01  Aligned_cols=187  Identities=23%  Similarity=0.355  Sum_probs=142.8

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce----EEEEeC---CCCcc--------------cCcEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL----QCTVEG---PRGGI--------------EDSTV   64 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~---~~~~~--------------~~~~v   64 (216)
                      ....+++|...|.++++.|.|..|++|+.|.+|++||+.....    .+.++.   |.-..              .....
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            4457889999999999999999999999999999999976421    112211   11100              44555


Q ss_pred             EEEECCCccee------------eeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCc-eeEEeeccccccccc
Q 043942           65 WMWNADRGAYL------------NMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLN  130 (216)
Q Consensus        65 ~i~d~~~~~~~------------~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~  130 (216)
                      +++|-......            ..-++|...++|..|+|+. ..++|++.|+++++||+.+.+ +.+.+....      
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~------  312 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP------  312 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc------
Confidence            66664422221            2235788999999999965 578999999999999998754 344444311      


Q ss_pred             ceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeC--CEEEEEEecCCCeEEEEeCCCcE
Q 043942          131 YWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHID--AIQSLSVSAIRESLVSVSVDGTA  191 (216)
Q Consensus       131 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~--~i~~~~~~~~~~~l~s~~~d~~v  191 (216)
                          ..+..-+++.++|+|+|+.||+|+.||.|                 .+|..  .|+++.||++|++|++-+.|+++
T Consensus       313 ----~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL  388 (641)
T KOG0772|consen  313 ----AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL  388 (641)
T ss_pred             ----CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence                11256678999999999999999999999                 66766  89999999999999999999999


Q ss_pred             EEEEcccccce
Q 043942          192 RVFEIAEFRRA  202 (216)
Q Consensus       192 ~vw~~~~~~~~  202 (216)
                      ++||++..+..
T Consensus       389 KvWDLrq~kkp  399 (641)
T KOG0772|consen  389 KVWDLRQFKKP  399 (641)
T ss_pred             eeeeccccccc
Confidence            99999986643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.9e-26  Score=162.34  Aligned_cols=185  Identities=21%  Similarity=0.341  Sum_probs=156.3

Q ss_pred             eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe-CCCCcc----------------cCcEEEEEECCCcc
Q 043942           11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE-GPRGGI----------------EDSTVWMWNADRGA   73 (216)
Q Consensus        11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~~----------------~~~~v~i~d~~~~~   73 (216)
                      .-|.++|.|+.|+.|...||+|+.||.|++|.+.+|.+++.++ .|..++                .|.++++--+..|+
T Consensus       260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence            3478899999999999999999999999999999999988876 555554                78899999999999


Q ss_pred             eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccc----------cccceEEEee------
Q 043942           74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEF----------SLNYWMICTS------  137 (216)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~----------~~~~~~~~~~------  137 (216)
                      ++..+++|...|+...|.++|..+++++.||+|++|+.++.+++.+++......          +++.+.+|..      
T Consensus       340 ~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i  419 (508)
T KOG0275|consen  340 CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI  419 (508)
T ss_pred             hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence            999999999999999999999999999999999999999998888777533211          1222222211      


Q ss_pred             ----------------eecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeC
Q 043942          138 ----------------LYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSV  187 (216)
Q Consensus       138 ----------------~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~  187 (216)
                                      ..+...+.+.+|.|.++++.++|+.+              ..|...+..++-+|..+.|++-++
T Consensus       420 mn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE  499 (508)
T KOG0275|consen  420 MNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE  499 (508)
T ss_pred             EeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc
Confidence                            23345567789999999999999987              567788899999999999999999


Q ss_pred             CCcEEEEE
Q 043942          188 DGTARVFE  195 (216)
Q Consensus       188 d~~v~vw~  195 (216)
                      ||.+++|.
T Consensus       500 DgllKLWk  507 (508)
T KOG0275|consen  500 DGLLKLWK  507 (508)
T ss_pred             cchhhhcC
Confidence            99999995

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1e-24  Score=164.72  Aligned_cols=190  Identities=17%  Similarity=0.269  Sum_probs=164.1

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcc-----------------cCcE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGI-----------------EDST   63 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~-----------------~~~~   63 (216)
                      ++++.++++.+|.+-|.|++.+|...+++|+|.|-+|++||.+.. .+.+++++|..-+                 -|++
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            578999999999999999999999999999999999999999875 6777888877543                 7999


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCC--cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDG--KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      |++|.+....+..++++|...|+|+.|-+.|  .+|++|++|.++++||..+..+++++.+               |...
T Consensus       165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG---------------Ht~N  229 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG---------------HTNN  229 (794)
T ss_pred             EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc---------------cccc
Confidence            9999999999999999999999999998744  6999999999999999999999999998               9999


Q ss_pred             eEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          142 VTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      |..+.|+|.-.++++|++||++              .-....+++++-.+.++.++.|.++|.+. .++-..++...+..
T Consensus       230 vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsMd~  308 (794)
T KOG0276|consen  230 VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSMDS  308 (794)
T ss_pred             ceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceeecC
Confidence            9999999999999999999998              12235789999888888888887666654 34544444444433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=1.5e-24  Score=166.73  Aligned_cols=207  Identities=20%  Similarity=0.252  Sum_probs=163.9

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC----------cc----cCcEEEEEECCCcc
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----------GI----EDSTVWMWNADRGA   73 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----------~~----~~~~v~i~d~~~~~   73 (216)
                      .++.+|...|.++++|.+...+++|+ .+.+++|+..+.++++++...-.          .+    .+|.+.+||+....
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            35679999999999999987777776 67899999999999998875411          01    88999999999999


Q ss_pred             eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-----Ccee--------EEeec--c--cccccccceE---
Q 043942           74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-----GENF--------HAIRR--S--SLEFSLNYWM---  133 (216)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-----~~~~--------~~~~~--~--~~~~~~~~~~---  133 (216)
                      .+.+.++|.+.+.+++.+||++.++||+.|.+|++||+.-     +...        .++..  .  ....++....   
T Consensus       446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence            9999999999999999999999999999999999999752     1111        11111  0  0111111111   


Q ss_pred             -------------------EEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCC
Q 043942          134 -------------------ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRE  180 (216)
Q Consensus       134 -------------------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~  180 (216)
                                         ..-+|.-||.++..+||++.+++|+.|..+              .+|...|.++.|.|...
T Consensus       526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~  605 (888)
T KOG0306|consen  526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH  605 (888)
T ss_pred             EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence                               112488889999999999999999999888              67888999999999888


Q ss_pred             eEEEEeCCCcEEEEEcccccceeecCCcceeEEEe
Q 043942          181 SLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL  215 (216)
Q Consensus       181 ~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~  215 (216)
                      ++.+||.|+.|+-||-...+.++.++.|...++.|
T Consensus       606 ~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL  640 (888)
T KOG0306|consen  606 LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL  640 (888)
T ss_pred             eEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence            89999999999999998888888888887777665

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.7e-25  Score=154.25  Aligned_cols=175  Identities=19%  Similarity=0.243  Sum_probs=134.2

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce-----E-EEEeC-CCCcc--------------cCcEEE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL-----Q-CTVEG-PRGGI--------------EDSTVW   65 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-----~-~~~~~-~~~~~--------------~~~~v~   65 (216)
                      +..|++|.+.|++++|+.||++|||++.|+.|++|++++-..     + ..++. |...+              ...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            346789999999999999999999999999999999876321     1 11111 11111              677777


Q ss_pred             EEECCCc---ceee---------eeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceE
Q 043942           66 MWNADRG---AYLN---------MFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWM  133 (216)
Q Consensus        66 i~d~~~~---~~~~---------~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  133 (216)
                      +|.+...   ....         --+-|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+..           
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-----------  226 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-----------  226 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-----------
Confidence            7776421   1110         011244556667777788999999999999999999 998888876           


Q ss_pred             EEeeeecCeEEEEeCCCCcEEEEecccCeE----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcE
Q 043942          134 ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTA  191 (216)
Q Consensus       134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v  191 (216)
                          ....-+..+.+|+|+++++++..-.+                      .+|...|..++|+++.+.+++.|.||+.
T Consensus       227 ----nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~w  302 (420)
T KOG2096|consen  227 ----NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKW  302 (420)
T ss_pred             ----ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcE
Confidence                45556677889999999987653332                      7999999999999999999999999999


Q ss_pred             EEEEcc
Q 043942          192 RVFEIA  197 (216)
Q Consensus       192 ~vw~~~  197 (216)
                      ++||+.
T Consensus       303 riwdtd  308 (420)
T KOG2096|consen  303 RIWDTD  308 (420)
T ss_pred             EEeecc
Confidence            999975

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=2.5e-24  Score=150.65  Aligned_cols=184  Identities=20%  Similarity=0.306  Sum_probs=150.7

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC------------------ceEEEEeCCCCcc----------
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR------------------NLQCTVEGPRGGI----------   59 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~------------------~~~~~~~~~~~~~----------   59 (216)
                      ..+..|++++.+.+|+|||.++|||+.|..|++.|.+..                  -.++++..|...+          
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            456789999999999999999999999999999998721                  1334444444433          


Q ss_pred             ------cCcEEEEEECCCcce---eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccccccc
Q 043942           60 ------EDSTVWMWNADRGAY---LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLN  130 (216)
Q Consensus        60 ------~~~~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  130 (216)
                            .|++|++||..+...   .+.++ ...+|.++.|+|.|.+|+.|..-..+++||+.+-++...-...       
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd-------  257 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD-------  257 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc-------
Confidence                  899999999975432   22333 4578999999999999999999999999999988765433321       


Q ss_pred             ceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------Eeee-CCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          131 YWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHI-DAIQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       131 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~-~~i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                           ..|.+.|+++.+++.+++.++++.||.|               ..|. ..|.+..|..+|+|+++.+.|..+++|
T Consensus       258 -----~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW  332 (430)
T KOG0640|consen  258 -----DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW  332 (430)
T ss_pred             -----cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence                 1288999999999999999999999998               4453 579999999999999999999999999


Q ss_pred             Ecccccceee
Q 043942          195 EIAEFRRATK  204 (216)
Q Consensus       195 ~~~~~~~~~~  204 (216)
                      .+.+++.+..
T Consensus       333 Ei~t~R~l~~  342 (430)
T KOG0640|consen  333 EISTGRMLKE  342 (430)
T ss_pred             eecCCceEEE
Confidence            9999887653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.93  E-value=6.9e-26  Score=160.64  Aligned_cols=179  Identities=20%  Similarity=0.407  Sum_probs=156.0

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce---EEEEeCCCCcc--------------cCcE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL---QCTVEGPRGGI--------------EDST   63 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~~--------------~~~~   63 (216)
                      +++|++++++-+|.+.|..+.|+.  .+++|++.|.++.+||+.....   ...+.+|...+              .|.+
T Consensus       264 v~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRT  341 (499)
T KOG0281|consen  264 VNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT  341 (499)
T ss_pred             ccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCce
Confidence            478999999999999999999985  5999999999999999987632   12333444433              8999


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      +++|++.++..++++.+|...|.|+.+  .++++++|+.|.+|++||+..|..+..+.+               |+.-|.
T Consensus       342 ikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG---------------HEeLvR  404 (499)
T KOG0281|consen  342 IKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG---------------HEELVR  404 (499)
T ss_pred             EEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc---------------hHHhhh
Confidence            999999999999999999999999988  489999999999999999999999999987               999999


Q ss_pred             EEEeCCCCcEEEEecccCeE-----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          144 CLSWPGTSKYLVTGCVDGKV-----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~~~~i-----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ++.|+  .+.+++|+.||.+                       ..|.+.|-.+.|  |...+++++.|.+|.|||+.++.
T Consensus       405 ciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  405 CIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             heeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCC
Confidence            99996  4679999999998                       567788999988  67789999999999999998765


Q ss_pred             ce
Q 043942          201 RA  202 (216)
Q Consensus       201 ~~  202 (216)
                      +.
T Consensus       481 ~~  482 (499)
T KOG0281|consen  481 PS  482 (499)
T ss_pred             cc
Confidence            43

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=2.1e-24  Score=150.97  Aligned_cols=180  Identities=18%  Similarity=0.246  Sum_probs=157.3

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC------------ceEEEEeCCCCcc------cCcEEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR------------NLQCTVEGPRGGI------EDSTVWM   66 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~------------~~~~~~~~~~~~~------~~~~v~i   66 (216)
                      -.+++|-.|.++|+++.|+|....|++++.|++|+++|+...            +.+..+..|..+.      ...++++
T Consensus       163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl  242 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL  242 (430)
T ss_pred             ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence            467889999999999999999999999999999999998643            4566777777665      7788999


Q ss_pred             EECCCcceeeee---eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           67 WNADRGAYLNMF---SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        67 ~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      ||+++.++....   ..|.+.|+++.+++.++..+||+.||.|++||--+++++.++....             ....|.
T Consensus       243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-------------~gsevc  309 (430)
T KOG0640|consen  243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-------------GGSEVC  309 (430)
T ss_pred             EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-------------CCceee
Confidence            999998876554   3588999999999999999999999999999999999988876532             467899


Q ss_pred             EEEeCCCCcEEEEecccCeE------------------------------------------------------------
Q 043942          144 CLSWPGTSKYLVTGCVDGKV------------------------------------------------------------  163 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~~~~i------------------------------------------------------------  163 (216)
                      +..|..+|+++++++.|..+                                                            
T Consensus       310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~  389 (430)
T KOG0640|consen  310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA  389 (430)
T ss_pred             eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence            99999999999999999877                                                            


Q ss_pred             ---EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          164 ---DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       164 ---~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                         .+|.+.+..+.-||.+.-+++|+.|-..|+|--+
T Consensus       390 l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  390 LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence               6889999999999999999999999999999643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.3e-24  Score=154.94  Aligned_cols=195  Identities=21%  Similarity=0.254  Sum_probs=161.7

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC---ceEEEEeCCCCcc----------------cCcEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR---NLQCTVEGPRGGI----------------EDSTVWM   66 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~----------------~~~~v~i   66 (216)
                      ..+.+..|.+.|+-+.||++|+|||+++.|.+..+|++...   +..+++.+|..++                .+..+.+
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            34567889999999999999999999999999999987654   4577888888766                5666999


Q ss_pred             EECCCcceeeeee-ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           67 WNADRGAYLNMFS-GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        67 ~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      ||..+|.....+. ++...+.+.+|.|||..+++|+.|+.+..||++ |.........              ....|.++
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gv--------------r~~~v~dl  360 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGV--------------RDPKVHDL  360 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccc--------------ccceeEEE
Confidence            9999998887765 345789999999999999999999999999998 5544444431              23458899


Q ss_pred             EeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeE
Q 043942          146 SWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKL  212 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~  212 (216)
                      +.++||+++++.+.|..+             ..-..+|++++.|.+++++++-=.+..+++||+++.+.+.+..++.-..
T Consensus       361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~  440 (519)
T KOG0293|consen  361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH  440 (519)
T ss_pred             EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence            999999999998888877             2345799999999999999998899999999999888777776666665


Q ss_pred             EEe
Q 043942          213 FFL  215 (216)
Q Consensus       213 ~~~  215 (216)
                      |++
T Consensus       441 fiI  443 (519)
T KOG0293|consen  441 FII  443 (519)
T ss_pred             eEE
Confidence            553

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.8e-24  Score=156.33  Aligned_cols=176  Identities=23%  Similarity=0.302  Sum_probs=154.4

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC-------
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD-------   70 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~-------   70 (216)
                      .++|.+++-+|+|.+|+.|...|.+++|.+.+|..+..+..|-..+                .||.|.+|++.       
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            4679999999999999999899999999999998777666665544                89999999863       


Q ss_pred             --CcceeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           71 --RGAYLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        71 --~~~~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                        +-+++..+..|.-+|+++...+-  ..+++|++.|+++++||+..+..+..+.                ....+.+++
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~----------------fp~si~av~  224 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT----------------FPSSIKAVA  224 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe----------------cCCcceeEE
Confidence              34677889999999999988764  4689999999999999999999888876                678899999


Q ss_pred             eCCCCcEEEEecccCeE------------------------------EeeeC--CEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          147 WPGTSKYLVTGCVDGKV------------------------------DGHID--AIQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i------------------------------~~~~~--~i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                      .+|..+.+++|+.+|.+                              .+|.+  +|++++.+-||.+|++|+.||+|.||
T Consensus       225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW  304 (476)
T ss_pred             EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence            99999999999999998                              56666  99999999999999999999999999


Q ss_pred             Ecccccceeec
Q 043942          195 EIAEFRRATKA  205 (216)
Q Consensus       195 ~~~~~~~~~~~  205 (216)
                      |+.+.+++..+
T Consensus       305 di~S~Q~iRtl  315 (476)
T KOG0646|consen  305 DIYSKQCIRTL  315 (476)
T ss_pred             ecchHHHHHHH
Confidence            99887765443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.93  E-value=2.3e-24  Score=155.42  Aligned_cols=178  Identities=19%  Similarity=0.276  Sum_probs=156.3

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------------
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------------   59 (216)
                      +.+.+|.+..++|+++.|.++++.+++++.|+.+++|+....+...++.+|...+                         
T Consensus       210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WD  289 (459)
T KOG0288|consen  210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWD  289 (459)
T ss_pred             hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhh
Confidence            3566777888899999999999999999999999999999999888888887755                         


Q ss_pred             ------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEE
Q 043942           60 ------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIW  109 (216)
Q Consensus        60 ------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~w  109 (216)
                                                    .|++|++||+++..+......+. .|+++..++++..+++++.|.++.+.
T Consensus       290 l~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~vi  368 (459)
T KOG0288|consen  290 LQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVI  368 (459)
T ss_pred             hhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeee
Confidence                                          78889999999999988888664 89999999999999999999999999


Q ss_pred             eCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------EeeeC-CEEEE
Q 043942          110 NPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHID-AIQSL  173 (216)
Q Consensus       110 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~-~i~~~  173 (216)
                      |+++....+.+......           .....+.+.|+|++.|+++|+.||.+               ..+.. .|+++
T Consensus       369 DlRt~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~  437 (459)
T KOG0288|consen  369 DLRTKEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL  437 (459)
T ss_pred             ecccccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE
Confidence            99998888888764322           34558999999999999999999998               22222 69999


Q ss_pred             EEecCCCeEEEEeCCCcEEEE
Q 043942          174 SVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       174 ~~~~~~~~l~s~~~d~~v~vw  194 (216)
                      +|+|.|.+|++++.++.+.+|
T Consensus       438 ~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  438 SWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EEcCCCchhhcccCCcceEec
Confidence            999999999999999999999

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=7.6e-24  Score=147.37  Aligned_cols=191  Identities=20%  Similarity=0.352  Sum_probs=141.6

Q ss_pred             cccceEEEEEcc-CCCEEEEEcCCCcEEEEECCC-CceEE-EEeCCCCcc----------------cCcEEEEEECCCcc
Q 043942           13 HKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSS-RNLQC-TVEGPRGGI----------------EDSTVWMWNADRGA   73 (216)
Q Consensus        13 h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~-~~~~~-~~~~~~~~~----------------~~~~v~i~d~~~~~   73 (216)
                      -.+.|.+++||| ...+++.+|.|++||+|+++. +.... ....+..++                .|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            457899999999 556777999999999999987 33222 122222222                89999999999995


Q ss_pred             eeeeeeccCCCeeEEEEcCCCc--EEEEecCCCeEEEEeCCCCceeEEeecccccc-------------cccceEEE---
Q 043942           74 YLNMFSGHGSGLTCGDFTTDGK--TICTGSDNATLSIWNPKGGENFHAIRRSSLEF-------------SLNYWMIC---  135 (216)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~--~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~-------------~~~~~~~~---  135 (216)
                      . ..+..|.++|.++.|-+...  .|+||+.|++|++||++...++..+..+.-..             ..+.+.+.   
T Consensus       106 ~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  106 V-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             e-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence            4 56667999999999987554  89999999999999999888777665422111             01111111   


Q ss_pred             ----------eeeecCeEEEEeCCCCcEEEEecccCeE----------------Eeee---------CCEEEEEEecCCC
Q 043942          136 ----------TSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHI---------DAIQSLSVSAIRE  180 (216)
Q Consensus       136 ----------~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~---------~~i~~~~~~~~~~  180 (216)
                                ....-.+++++..++....+.|+-+|.+                ..|.         ..|.+++|+|...
T Consensus       185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg  264 (347)
T KOG0647|consen  185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG  264 (347)
T ss_pred             CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence                      1134457888888888778999999987                4454         2588999999999


Q ss_pred             eEEEEeCCCcEEEEEcccccceee
Q 043942          181 SLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       181 ~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      .|+|+|.||++.+||-....++..
T Consensus       265 tlvTaGsDGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  265 TLVTAGSDGTFSFWDKDARTKLKT  288 (347)
T ss_pred             eEEEecCCceEEEecchhhhhhhc
Confidence            999999999999999776555443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.7e-24  Score=168.11  Aligned_cols=177  Identities=19%  Similarity=0.271  Sum_probs=165.4

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCc
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRG   72 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~   72 (216)
                      .+..-...|..++|+|...+++++-..|.|++||.+-+.++..+..|.+++                .|..|++|+..+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            344556789999999999999999999999999999999999998888877                8999999999999


Q ss_pred             ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      +++.++.+|-..|..+.|++.-.+|+++|+|.+|++|+..+++++..+.+               |...|.|..|+|...
T Consensus        84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG---------------HnHYVMcAqFhptED  148 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG---------------HNHYVMCAQFHPTED  148 (1202)
T ss_pred             eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec---------------CceEEEeeccCCccc
Confidence            99999999999999999999999999999999999999999999999998               999999999999999


Q ss_pred             EEEEecccCeE-------------------------------------------EeeeCCEEEEEEecCCCeEEEEeCCC
Q 043942          153 YLVTGCVDGKV-------------------------------------------DGHIDAIQSLSVSAIRESLVSVSVDG  189 (216)
Q Consensus       153 ~l~~~~~~~~i-------------------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~  189 (216)
                      .+++++-|.++                                           .+|...|.-++|+|.-.++++|++|.
T Consensus       149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR  228 (1202)
T KOG0292|consen  149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR  228 (1202)
T ss_pred             eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence            99999999988                                           78889999999999999999999999


Q ss_pred             cEEEEEccccc
Q 043942          190 TARVFEIAEFR  200 (216)
Q Consensus       190 ~v~vw~~~~~~  200 (216)
                      .|++|.....+
T Consensus       229 qVKlWrmnetK  239 (1202)
T KOG0292|consen  229 QVKLWRMNETK  239 (1202)
T ss_pred             eeeEEEecccc
Confidence            99999987544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=3.4e-25  Score=159.71  Aligned_cols=199  Identities=18%  Similarity=0.247  Sum_probs=157.2

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~v~i~d~   69 (216)
                      ..+..|.+.+..+.|-++...|++|+.|..|++|+....+  ...++.+..+.+                .|+.+++|++
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv  248 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV  248 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence            4567899999999999998999999999999999987765  445555443333                8999999999


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccccccc--ceEEEe-----------
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLN--YWMICT-----------  136 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------  136 (216)
                      ...+...++.+|.+.|+++.|......+++|+.|.+|+.||+.+..+..++...+..++..  ......           
T Consensus       249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD  328 (459)
T KOG0288|consen  249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWD  328 (459)
T ss_pred             cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEe
Confidence            9999999999999999999998877779999999999999999876655444322111110  111111           


Q ss_pred             ----------eeecCeEEEEeCCCCcEEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942          137 ----------SLYDGVTCLSWPGTSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSVD  188 (216)
Q Consensus       137 ----------~~~~~v~~~~~~~~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d  188 (216)
                                ...+.|+++..++++..+.+++.|..+                  .......+.+.|||++.|+++||.|
T Consensus       329 ~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d  408 (459)
T KOG0288|consen  329 IRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD  408 (459)
T ss_pred             ccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCC
Confidence                      133468999999999999999999887                  1223457899999999999999999


Q ss_pred             CcEEEEEcccccceeecC
Q 043942          189 GTARVFEIAEFRRATKAP  206 (216)
Q Consensus       189 ~~v~vw~~~~~~~~~~~~  206 (216)
                      |.|+||++.+++....+.
T Consensus       409 gsv~iW~v~tgKlE~~l~  426 (459)
T KOG0288|consen  409 GSVYIWSVFTGKLEKVLS  426 (459)
T ss_pred             CcEEEEEccCceEEEEec
Confidence            999999999988776543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3e-24  Score=162.64  Aligned_cols=196  Identities=18%  Similarity=0.364  Sum_probs=155.7

Q ss_pred             cccceE---EEEEcc-CCCEEEEEcCCCcEEEEECCCCc------eEEEEeCCCCcc----------------cCcEEEE
Q 043942           13 HKDSFS---SLAFST-DGQLLASGGFHGLVQNRDTSSRN------LQCTVEGPRGGI----------------EDSTVWM   66 (216)
Q Consensus        13 h~~~v~---~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~------~~~~~~~~~~~~----------------~~~~v~i   66 (216)
                      |...|.   .+..+. .+++|+|||.||.|++|+.....      ....++.|...+                .|.+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            445555   555554 56789999999999999986532      244555555433                8999999


Q ss_pred             EECCCc--ceeeeeeccCCCeeEEEE-cCCCcEEEEecCCCeEEEEeCCCCc--eeEEeecccccccccceEEEeeeecC
Q 043942           67 WNADRG--AYLNMFSGHGSGLTCGDF-TTDGKTICTGSDNATLSIWNPKGGE--NFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        67 ~d~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~t~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      |+...+  -++.+++.|...|.|+++ .++...+|+|+-|+.|.+||+.++.  .+..+.......      ...++..+
T Consensus       100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s------l~sG~k~s  173 (735)
T KOG0308|consen  100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS------LGSGPKDS  173 (735)
T ss_pred             eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc------CCCCCccc
Confidence            999877  577888999999999999 8889999999999999999999883  333333211110      01147889


Q ss_pred             eEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          142 VTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      |++++.++.|..+++|+.++.+              .+|...|..+..++||+.++++|.||+|++||+...+++.....
T Consensus       174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v  253 (735)
T KOG0308|consen  174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV  253 (735)
T ss_pred             eeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe
Confidence            9999999999999999998877              89999999999999999999999999999999999999887666


Q ss_pred             cceeEEE
Q 043942          208 YSFKLFF  214 (216)
Q Consensus       208 ~~~~~~~  214 (216)
                      |.-.++.
T Consensus       254 H~e~VWa  260 (735)
T KOG0308|consen  254 HKEGVWA  260 (735)
T ss_pred             ccCceEE
Confidence            6554443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.4e-23  Score=163.03  Aligned_cols=180  Identities=18%  Similarity=0.285  Sum_probs=144.1

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcc-------------------------------
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGI-------------------------------   59 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~-------------------------------   59 (216)
                      +|...-+.++|.|+|+.|.+++.||.|++|+..+. +....+..+...+                               
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~   90 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT   90 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence            68899999999999999999999999999987654 2222222111100                               


Q ss_pred             -------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 043942           60 -------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG  114 (216)
Q Consensus        60 -------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~  114 (216)
                                               .|-.|++.++........+++|.++|.++.|+|++++||+.+.||.|++||+.++
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~  170 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG  170 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence                                     6667777777777778889999999999999999999999999999999999999


Q ss_pred             ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecC
Q 043942          115 ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAI  178 (216)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~  178 (216)
                      .....+..-...+...       ....+..++|+|++..++..+.|+.|                ..+...+..+.|+|+
T Consensus       171 ~~~~tl~~v~k~n~~~-------~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  171 ILSKTLTGVDKDNEFI-------LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             hhhhhcccCCcccccc-------ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence            8877766532222111       24567889999998888888888877                334455999999999


Q ss_pred             CCeEEEEeCCCcEEEEEccc
Q 043942          179 RESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       179 ~~~l~s~~~d~~v~vw~~~~  198 (216)
                      |+|||+++.||.|.|||..+
T Consensus       244 G~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  244 GKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CcEEeeeccCCcEEEEeccc
Confidence            99999999999999999985

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=2.2e-23  Score=151.37  Aligned_cols=179  Identities=16%  Similarity=0.251  Sum_probs=158.2

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeee
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~   78 (216)
                      ..+.++...|....+++|+.|..+.++|..+++.+..+++|...+                .|..|++|...........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            467888888887899999999999999999999999999887755                8899999999887777778


Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                      ..|..+|+.+..+|.|.+|++++.|++..+.|++++..+.......             ..-.+++.+|+|||..|.+|.
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~-------------s~v~~ts~~fHpDgLifgtgt  366 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET-------------SDVEYTSAAFHPDGLIFGTGT  366 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc-------------ccceeEEeeEcCCceEEeccC
Confidence            8899999999999999999999999999999999999877665310             234589999999999999999


Q ss_pred             ccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          159 VDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       159 ~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                      .|+.+              .+|.++|..++|+.||-||+++++|+.|++||++..+....++
T Consensus       367 ~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  367 PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            99998              6899999999999999999999999999999999876554443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=5.6e-23  Score=149.31  Aligned_cols=193  Identities=17%  Similarity=0.222  Sum_probs=160.6

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVW   65 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~   65 (216)
                      .+++.+.+++||...|+.+.++|+...+++++.|..|+||.............|..++                .|++..
T Consensus       249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~  328 (506)
T KOG0289|consen  249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA  328 (506)
T ss_pred             chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence            3567788999999999999999999999999999999999998877666666666655                899999


Q ss_pred             EEECCCcceeeeeeccC--CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           66 MWNADRGAYLNMFSGHG--SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        66 i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      +.|++++..+.......  -.+++.+|+|||..+.+|..|+.+++||+.++..+..|+.               |.++|.
T Consensus       329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg---------------ht~~vk  393 (506)
T KOG0289|consen  329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG---------------HTGPVK  393 (506)
T ss_pred             EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC---------------CCCcee
Confidence            99999998887766322  3589999999999999999999999999999999999988               999999


Q ss_pred             EEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc--cccceeecC
Q 043942          144 CLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA--EFRRATKAP  206 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~--~~~~~~~~~  206 (216)
                      .++|+.+|-+++++++|+.+               ......+.++.|++.|++|+.++.|=.|++++-.  +...+..++
T Consensus       394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~  473 (506)
T KOG0289|consen  394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA  473 (506)
T ss_pred             EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh
Confidence            99999999999999999966               1222369999999999999999877666665522  344444444


Q ss_pred             Ccc
Q 043942          207 SYS  209 (216)
Q Consensus       207 ~~~  209 (216)
                      .++
T Consensus       474 ~~s  476 (506)
T KOG0289|consen  474 DHS  476 (506)
T ss_pred             hcc
Confidence            433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=5.4e-24  Score=157.42  Aligned_cols=180  Identities=19%  Similarity=0.313  Sum_probs=156.5

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc------------------ccCcEEEEEECCCccee
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG------------------IEDSTVWMWNADRGAYL   75 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~------------------~~~~~v~i~d~~~~~~~   75 (216)
                      ..-|.++.+.|||+.|++|+.-.++.|||+......-..+....+                  ..||.|.|||+.....+
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V  544 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV  544 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence            456889999999999999999999999999876443332222211                  18999999999999999


Q ss_pred             eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                      +.+++|...+.||.+++||..|.||+-|++|+.||+++++.++...                ....|.++...|++.+++
T Consensus       545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd----------------F~SQIfSLg~cP~~dWla  608 (705)
T KOG0639|consen  545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD----------------FSSQIFSLGYCPTGDWLA  608 (705)
T ss_pred             ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----------------hhhhheecccCCCcccee
Confidence            9999999999999999999999999999999999999999887766                678899999999999999


Q ss_pred             EecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          156 TGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       156 ~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      +|-+++.+             .-|..-|.++.|.+.|+++++.+.|+.+..|...-+..+.+.++.+
T Consensus       609 vGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S  675 (705)
T KOG0639|consen  609 VGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS  675 (705)
T ss_pred             eecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC
Confidence            99998887             4677889999999999999999999999999988887777665544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.91  E-value=4.2e-23  Score=147.58  Aligned_cols=172  Identities=24%  Similarity=0.459  Sum_probs=144.5

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC-------------------------CceEEEEeCCCCcc-----
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-------------------------RNLQCTVEGPRGGI-----   59 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-------------------------~~~~~~~~~~~~~~-----   59 (216)
                      -+||...|-+++..++|..+++|+.|..+++|+..+                         +.++-++.+|..++     
T Consensus       189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w  268 (423)
T KOG0313|consen  189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW  268 (423)
T ss_pred             hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence            349999999999999999999999999999999321                         12345566676665     


Q ss_pred             ----------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce---eEEeeccccc
Q 043942           60 ----------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN---FHAIRRSSLE  126 (216)
Q Consensus        60 ----------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~  126 (216)
                                .|.+|+.||+.++..+.++.+ ...+++++++|..++|++|+.|..+++||.+++.-   .+.+..    
T Consensus       269 ~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g----  343 (423)
T KOG0313|consen  269 SDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG----  343 (423)
T ss_pred             cCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec----
Confidence                      899999999999999888874 46699999999999999999999999999997642   344444    


Q ss_pred             ccccceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942          127 FSLNYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGT  190 (216)
Q Consensus       127 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~  190 (216)
                                 |..-|.++.|+|... .|++++.|+.+               .+|...|.++.|+ ++.++++||.|++
T Consensus       344 -----------H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~  411 (423)
T KOG0313|consen  344 -----------HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNK  411 (423)
T ss_pred             -----------chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcce
Confidence                       999999999999665 57889999988               6888999999994 4678999999999


Q ss_pred             EEEEEccc
Q 043942          191 ARVFEIAE  198 (216)
Q Consensus       191 v~vw~~~~  198 (216)
                      ++++.-..
T Consensus       412 l~i~~~~~  419 (423)
T KOG0313|consen  412 LRIFKGSP  419 (423)
T ss_pred             EEEecccc
Confidence            99987543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.2e-24  Score=149.67  Aligned_cols=185  Identities=23%  Similarity=0.285  Sum_probs=148.5

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC------CCceEE------EEeCCCCcc--cCcEEEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS------SRNLQC------TVEGPRGGI--EDSTVWM   66 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~------~~~~~~------~~~~~~~~~--~~~~v~i   66 (216)
                      |++|+++.++.||.+.|+++.|++.+.++++++.|++..||...      ......      +.+.+....  .|+..+.
T Consensus       177 ~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s  256 (481)
T KOG0300|consen  177 LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS  256 (481)
T ss_pred             eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence            58899999999999999999999999999999999999999732      111000      001000000  1221111


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      =...-..++..+.+|.+.|.+..|-..|+.+++++.|++..+||++++..+..+.+               |....+.++
T Consensus       257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG---------------Hd~ELtHcs  321 (481)
T KOG0300|consen  257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG---------------HDSELTHCS  321 (481)
T ss_pred             CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccC---------------cchhccccc
Confidence            10011246677899999999999999999999999999999999999999999988               999999999


Q ss_pred             eCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          147 WPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      -+|..+++++++.|...               ++|...|+++.|.-+.+ +++++.|.+|++||+++.+.
T Consensus       322 tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  322 THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccC
Confidence            99999999999999877               89999999999987655 78999999999999998653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.1e-22  Score=149.46  Aligned_cols=178  Identities=20%  Similarity=0.298  Sum_probs=151.3

Q ss_pred             eeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMW   67 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~   67 (216)
                      .++.+++|+.+|....|+|+ +..|++|+.|+.+++||+.+......+.+|..-+                 .||.|++|
T Consensus       102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            45678899999999999995 5678899999999999999998876888887654                 89999999


Q ss_pred             ECCCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEE
Q 043942           68 NADRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        68 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      |++.. ..+.++. |..+|..+.+-|.|..+++++.. .+++||+-+|.. +.....               |...|+|+
T Consensus       182 DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~---------------H~KtVTcL  244 (487)
T KOG0310|consen  182 DTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFN---------------HNKTVTCL  244 (487)
T ss_pred             EeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhc---------------ccceEEEE
Confidence            99976 6666665 99999999999999999998754 799999996644 444443               88999999


Q ss_pred             EeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          146 SWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ++..++..|++++-|+.+             ....++|.+++.+|+++.++.|-.+|.+.+=+....+
T Consensus       245 ~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  245 RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             EeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence            999999999999999998             4556899999999999999999999998877554433

>PTZ00421 coronin; Provisional

Probab=99.91  E-value=1.9e-22  Score=156.32  Aligned_cols=165  Identities=15%  Similarity=0.104  Sum_probs=130.5

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCccee---eeeeccCCCeeEEE
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYL---NMFSGHGSGLTCGD   89 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~---~~~~~~~~~v~~~~   89 (216)
                      |-..|.....++++..+++++.+.....|+...+                ...++.-+.|+..   ..+.+|.+.|.+++
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg----------------~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~   82 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGS----------------TAVLKHTDYGKLASNPPILLGQEGPIIDVA   82 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCc----------------eEEeeccccccCCCCCceEeCCCCCEEEEE
Confidence            3345666777788788899998998999986432                2333333334322   24778999999999


Q ss_pred             EcC-CCcEEEEecCCCeEEEEeCCCCc-------eeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEeccc
Q 043942           90 FTT-DGKTICTGSDNATLSIWNPKGGE-------NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVD  160 (216)
Q Consensus        90 ~~~-~~~~l~t~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~  160 (216)
                      |+| ++++|++|+.|++|++||+.++.       .+..+..               |...|.+++|+|++ ++|++++.|
T Consensus        83 fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g---------------H~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         83 FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG---------------HTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC---------------CCCcEEEEEeCcCCCCEEEEEeCC
Confidence            999 88999999999999999998653       2233333               88999999999985 689999999


Q ss_pred             CeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942          161 GKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSY  208 (216)
Q Consensus       161 ~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~  208 (216)
                      +.+              ..|...|.+++|+|+|.+|++++.|+.|++||+++++....+..|
T Consensus       148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H  209 (493)
T PTZ00421        148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH  209 (493)
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence            988              457889999999999999999999999999999988776655444

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.2e-22  Score=138.94  Aligned_cols=185  Identities=16%  Similarity=0.193  Sum_probs=148.1

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWM   66 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i   66 (216)
                      |.+.+.++.+.||...|.+++.+|-++.+++++.|++|++||++..++...+.....++              ....|++
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkL  166 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKL  166 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEE
Confidence            45788999999999999999999988999999999999999999888777766554443              3449999


Q ss_pred             EECCCc--ceeeeee---ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942           67 WNADRG--AYLNMFS---GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        67 ~d~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      ||++.-  .+..++.   +.....+.+.|+|||+.++.+...+.+++.|.-+|..+..+...+..            ..-
T Consensus       167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~------------~~~  234 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA------------GNL  234 (311)
T ss_pred             EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC------------CCc
Confidence            999852  3444433   33567899999999999999999999999999999988888763221            112


Q ss_pred             eEEEEeCCCCcEEEEecccCeE--------------Ee-eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          142 VTCLSWPGTSKYLVTGCVDGKV--------------DG-HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~~i--------------~~-~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      ....+|+||++++++|+.||.+              .+ +..++.++.|+|.-..++++  +..+.+|-....
T Consensus       235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~  305 (311)
T KOG1446|consen  235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED  305 (311)
T ss_pred             ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence            2678899999999999999998              23 56788999999987777766  567888866543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.8e-22  Score=139.18  Aligned_cols=195  Identities=17%  Similarity=0.326  Sum_probs=147.3

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----------c----cCcEEEEEECCCcceeeeee
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----------I----EDSTVWMWNADRGAYLNMFS   79 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----------~----~~~~v~i~d~~~~~~~~~~~   79 (216)
                      .+.|.++.|+|.++.|+.+++||++++||....+....+....+-          +    -|+.|+.+|++++.... +.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~-ig   91 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ-IG   91 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCccee-ec
Confidence            578999999999999999999999999999876544433321111          1    89999999999887654 55


Q ss_pred             ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc--cc--ccceEE---------------------
Q 043942           80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE--FS--LNYWMI---------------------  134 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~--~~~~~~---------------------  134 (216)
                      .|..++.|+.+++....+++|+.|++|++||.+.......+......  .+  .+.+.+                     
T Consensus        92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~  171 (323)
T KOG1036|consen   92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQR  171 (323)
T ss_pred             cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhh
Confidence            69999999999998889999999999999999953322222211100  00  000000                     


Q ss_pred             -EeeeecCeEEEEeCCCCcEEEEecccCeE------------------Eeee---------CCEEEEEEecCCCeEEEEe
Q 043942          135 -CTSLYDGVTCLSWPGTSKYLVTGCVDGKV------------------DGHI---------DAIQSLSVSAIRESLVSVS  186 (216)
Q Consensus       135 -~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------------~~~~---------~~i~~~~~~~~~~~l~s~~  186 (216)
                       .....-.++++++-|++.-+++++-||.+                  ..|.         .+|.+++|+|-...|+||+
T Consensus       172 reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG  251 (323)
T KOG1036|consen  172 RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG  251 (323)
T ss_pred             ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence             11144568899999988889999999998                  3332         4899999999999999999


Q ss_pred             CCCcEEEEEcccccceeecCCcc
Q 043942          187 VDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       187 ~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      .||.|.+||+.+.+.+..++.+.
T Consensus       252 sDG~V~~Wd~~~rKrl~q~~~~~  274 (323)
T KOG1036|consen  252 SDGIVNIWDLFNRKRLKQLAKYE  274 (323)
T ss_pred             CCceEEEccCcchhhhhhccCCC
Confidence            99999999999988887776653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.91  E-value=1.1e-22  Score=138.60  Aligned_cols=191  Identities=20%  Similarity=0.256  Sum_probs=159.0

Q ss_pred             eEEeeccccceEEEEEcc---CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------
Q 043942            7 ASEILGHKDSFSSLAFST---DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------   59 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------   59 (216)
                      ..+..+|..+|-.++|||   +|-+|++++.|+.-.+-+-+++..+.++++|.+.+                        
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            345679999999999996   78899999999999999999999999999998876                        


Q ss_pred             ---------------------------------cCcEEEEEECCCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCe
Q 043942           60 ---------------------------------EDSTVWMWNADRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNAT  105 (216)
Q Consensus        60 ---------------------------------~~~~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~  105 (216)
                                                       .+.-+++||++.. .+...+.+|.+.|..+-|....+.+++++.|++
T Consensus        87 ~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t  166 (334)
T KOG0278|consen   87 DAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT  166 (334)
T ss_pred             hhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence                                             4444566666533 344567789999999999998999999999999


Q ss_pred             EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE------------EeeeCCEEEE
Q 043942          106 LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------------DGHIDAIQSL  173 (216)
Q Consensus       106 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------~~~~~~i~~~  173 (216)
                      |++||.+++..++.+.                ...+|+++.++++|.++.++...+..            ..-...|.+.
T Consensus       167 VRLWD~rTgt~v~sL~----------------~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SA  230 (334)
T KOG0278|consen  167 VRLWDHRTGTEVQSLE----------------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESA  230 (334)
T ss_pred             eEEEEeccCcEEEEEe----------------cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccc
Confidence            9999999999999987                67899999999999998877655544            2334578999


Q ss_pred             EEecCCCeEEEEeCCCcEEEEEcccccceeec-CCcceeEE
Q 043942          174 SVSAIRESLVSVSVDGTARVFEIAEFRRATKA-PSYSFKLF  213 (216)
Q Consensus       174 ~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~-~~~~~~~~  213 (216)
                      .++|+...+++|+.|..++.||+.+++.+... ..|.-+++
T Consensus       231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh  271 (334)
T KOG0278|consen  231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH  271 (334)
T ss_pred             cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence            99999999999999999999999999887663 44444444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=8.2e-23  Score=142.16  Aligned_cols=176  Identities=23%  Similarity=0.356  Sum_probs=147.7

Q ss_pred             eccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCc------eEEE----Ee-----CCCCcc---------------
Q 043942           11 LGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRN------LQCT----VE-----GPRGGI---------------   59 (216)
Q Consensus        11 ~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~------~~~~----~~-----~~~~~~---------------   59 (216)
                      +.|.+.|+++...+ .|+|+++|+.||.|.+||+++-.      .+..    +.     +|.-++               
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46889999999998 68999999999999999997643      1111    10     111111               


Q ss_pred             --cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC---CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEE
Q 043942           60 --EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD---GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI  134 (216)
Q Consensus        60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  134 (216)
                        .|.++++||.++.+....++ -++.|.+-+++|-   .-++|+|..|-.|++.|+.+|...+.+.+            
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG------------  186 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG------------  186 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc------------
Confidence              79999999999998887777 5677999999983   44788899999999999999999999988            


Q ss_pred             EeeeecCeEEEEeCCCCcE-EEEecccCeE-----------------------------EeeeCCEEEEEEecCCCeEEE
Q 043942          135 CTSLYDGVTCLSWPGTSKY-LVTGCVDGKV-----------------------------DGHIDAIQSLSVSAIRESLVS  184 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~~~~~-l~~~~~~~~i-----------------------------~~~~~~i~~~~~~~~~~~l~s  184 (216)
                         |.+.|.++.|+|...+ |++|+.||.+                             ..|.+.+.+++|+.++.++++
T Consensus       187 ---Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~  263 (397)
T KOG4283|consen  187 ---HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS  263 (397)
T ss_pred             ---ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence               9999999999998775 6789999988                             577889999999999999999


Q ss_pred             EeCCCcEEEEEcccccce
Q 043942          185 VSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       185 ~~~d~~v~vw~~~~~~~~  202 (216)
                      ++.|..+++|+..+++..
T Consensus       264 ~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  264 CGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             ccCccceEEeecccCccc
Confidence            999999999999887643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=6.1e-23  Score=139.14  Aligned_cols=179  Identities=17%  Similarity=0.245  Sum_probs=145.5

Q ss_pred             ceeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCceEE--EEeCCCCcc------------------cCc
Q 043942            5 DWASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRNLQC--TVEGPRGGI------------------EDS   62 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~~------------------~~~   62 (216)
                      +++.+|.||.++|+.++|..  -|.+||++++||.|.||.-++++-.+  ....|...+                  .||
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG  126 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG  126 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence            57889999999999999976  79999999999999999998884333  223333322                  899


Q ss_pred             EEEEEECCCc---ceeeeeeccCCCeeEEEEcCC---C-----------cEEEEecCCCeEEEEeCCCCcee--EEeecc
Q 043942           63 TVWMWNADRG---AYLNMFSGHGSGLTCGDFTTD---G-----------KTICTGSDNATLSIWNPKGGENF--HAIRRS  123 (216)
Q Consensus        63 ~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~t~~~d~~i~~wd~~~~~~~--~~~~~~  123 (216)
                      .|.+.+.+..   .......+|.-.|++++|.|.   |           +.|++|+.|..|++|+..++.-.  ..+.. 
T Consensus       127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~-  205 (299)
T KOG1332|consen  127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG-  205 (299)
T ss_pred             cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh-
Confidence            9999998754   223445679999999999985   4           56999999999999999986432  23444 


Q ss_pred             cccccccceEEEeeeecCeEEEEeCCCC----cEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeE
Q 043942          124 SLEFSLNYWMICTSLYDGVTCLSWPGTS----KYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESL  182 (216)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l  182 (216)
                                    |.+-|+.++|.|.-    .+|++++.||.+                 ......+..+.||+.|+.|
T Consensus       206 --------------H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~L  271 (299)
T KOG1332|consen  206 --------------HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNIL  271 (299)
T ss_pred             --------------cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEE
Confidence                          99999999999954    579999999998                 2344579999999999999


Q ss_pred             EEEeCCCcEEEEEccc
Q 043942          183 VSVSVDGTARVFEIAE  198 (216)
Q Consensus       183 ~s~~~d~~v~vw~~~~  198 (216)
                      +.++.|++|.+|.-..
T Consensus       272 aVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  272 AVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEecCCcEEEEEEeCC
Confidence            9999999999998554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.90  E-value=2.9e-22  Score=155.80  Aligned_cols=176  Identities=24%  Similarity=0.402  Sum_probs=157.4

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE-EeCCCCcc----------------cCcEEEEEECCCccee
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT-VEGPRGGI----------------EDSTVWMWNADRGAYL   75 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~----------------~~~~v~i~d~~~~~~~   75 (216)
                      |...+.+..|.  ..++++++.|+++++||..++..+.. +.+|.+++                .|.++++||..++.+.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            56678888888  56899999999999999999998888 99988876                6999999999999999


Q ss_pred             eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                      ..+.+|.+.+.++...  ...+++|+.|.+|++|++.++..+..+.+               |.++|+++..+  +.+++
T Consensus       285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~---------------h~~~V~~v~~~--~~~lv  345 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG---------------HTGPVNCVQLD--EPLLV  345 (537)
T ss_pred             EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc---------------ccccEEEEEec--CCEEE
Confidence            9999999999999875  45788899999999999999999999987               99999999988  88999


Q ss_pred             EecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc-cceeecCCcce
Q 043942          156 TGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF-RRATKAPSYSF  210 (216)
Q Consensus       156 ~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~-~~~~~~~~~~~  210 (216)
                      +|+.|+.|              .+|..+|+++.+.+. ..+++|+.|++|++||+.+. +++..+..|..
T Consensus       346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~  414 (537)
T KOG0274|consen  346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS  414 (537)
T ss_pred             EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence            99999977              789999999988665 89999999999999999999 77766665543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=5.1e-24  Score=163.15  Aligned_cols=181  Identities=22%  Similarity=0.363  Sum_probs=164.8

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCc
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRG   72 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~   72 (216)
                      .+..|...|.++..-..++.+++|+.|..+.+|.+.....+..+.+|..++                .+|+|++||+++.
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence            445788899999987788999999999999999999888888888888877                8999999999999


Q ss_pred             ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      +.++++.+|...+.++.|+|-+.+.+.|+.|..+++||.+...+.+.+..               |...+..+.|+|+|+
T Consensus       103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---------------~~~vv~~l~lsP~Gr  167 (825)
T KOG0267|consen  103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS---------------HTRVVDVLRLSPDGR  167 (825)
T ss_pred             hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC---------------CcceeEEEeecCCCc
Confidence            99999999999999999999999999999999999999998888888887               888999999999999


Q ss_pred             EEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          153 YLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       153 ~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      +++.+++|..+              ..|.+.+..+.|+|..-++++||.|+++++||+++.+.+..
T Consensus       168 ~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s  233 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS  233 (825)
T ss_pred             eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence            99999998877              56889999999999999999999999999999997765543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=1e-22  Score=161.95  Aligned_cols=175  Identities=21%  Similarity=0.279  Sum_probs=136.0

Q ss_pred             cccceEEEEEccCCCEEEEEc--CCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942           13 HKDSFSSLAFSTDGQLLASGG--FHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDF   90 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~   90 (216)
                      +...|.++..+|+|..+|||+  .|+.+++|+...-.              ....-+|..-.+.+..+..|.+.|+|+.|
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--------------~~~~~~~~~l~k~l~~m~~h~~sv~CVR~   77 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--------------DEKEEKNENLPKHLCTMDDHDGSVNCVRF   77 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeecccccc--------------chhhhhhcccchhheeeccccCceeEEEE
Confidence            445799999999999999999  89999999875421              01111222234556677789999999999


Q ss_pred             cCCCcEEEEecCCCeEEEEeCCCCceeEEeec---ccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----
Q 043942           91 TTDGKTICTGSDNATLSIWNPKGGENFHAIRR---SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----  163 (216)
Q Consensus        91 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----  163 (216)
                      +|||++||+|++|+.|.+|+......-..+..   ......-+......+|...|..++|+|++.++++++.|+.+    
T Consensus        78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen   78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEc
Confidence            99999999999999999999874111111111   11111222344555699999999999999999999999988    


Q ss_pred             ----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          164 ----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       164 ----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                                .+|.+.|-.+.|+|-|+||++-+.|++|+||++.+...
T Consensus       158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i  205 (942)
T KOG0973|consen  158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI  205 (942)
T ss_pred             cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee
Confidence                      89999999999999999999999999999999877443

>PTZ00420 coronin; Provisional

Probab=99.90  E-value=1.9e-21  Score=151.90  Aligned_cols=163  Identities=13%  Similarity=0.137  Sum_probs=129.1

Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC-CcEEEEecCCCe
Q 043942           27 QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD-GKTICTGSDNAT  105 (216)
Q Consensus        27 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~  105 (216)
                      ...++++.+....+|+...|.            ..+.+++|+..+..++..+.+|.+.|.+++|+|+ +.+|++|+.|+.
T Consensus        31 s~~ia~n~~~~A~~w~~~gGG------------~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt   98 (568)
T PTZ00420         31 SCGIACSSGFVAVPWEVEGGG------------LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLT   98 (568)
T ss_pred             ceeEeeCCCeEEEEEEcCCCC------------ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe
Confidence            345666767778889887655            5778999998888888899999999999999996 789999999999


Q ss_pred             EEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCCCCcE-EEEecccCeE-------------EeeeCCE
Q 043942          106 LSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY-LVTGCVDGKV-------------DGHIDAI  170 (216)
Q Consensus       106 i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~i-------------~~~~~~i  170 (216)
                      |++||+.++.. ...+.        .......+|...|.+++|+|++.. +++++.|+.+             ..|...|
T Consensus        99 IrIWDi~t~~~~~~~i~--------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V  170 (568)
T PTZ00420         99 IRVWEIPHNDESVKEIK--------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKL  170 (568)
T ss_pred             EEEEECCCCCccccccc--------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcE
Confidence            99999986432 11100        001112238899999999999875 5688999988             2355789


Q ss_pred             EEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          171 QSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       171 ~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      .+++|+|+|++|++++.|+.|++||+++++....+..|.
T Consensus       171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             EEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence            999999999999999999999999999988777666654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.3e-22  Score=135.80  Aligned_cols=178  Identities=19%  Similarity=0.304  Sum_probs=145.2

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--ceEEEEeCCCCcc--------------cCcEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--NLQCTVEGPRGGI--------------EDSTV   64 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~--------------~~~~v   64 (216)
                      +++|+.++.+++|.+.|+.++|+.+...+++|+.|.++++||.++.  ++++.+......+              .||++
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtv  167 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTV  167 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcE
Confidence            4789999999999999999999999999999999999999999875  5555554433333              89999


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC--e
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG--V  142 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v  142 (216)
                      +.||++.|+...-+-+  .+|+++.|+++++..+.++.|+++++.|-.+|+.+..+..               |...  -
T Consensus       168 RtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG---------------hkn~eyk  230 (307)
T KOG0316|consen  168 RTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG---------------HKNMEYK  230 (307)
T ss_pred             EEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc---------------cccceee
Confidence            9999999987665543  5799999999999999999999999999999999988886               4433  3


Q ss_pred             EEEEeCCCCcEEEEecccCeE--------------EeeeCC-EEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV--------------DGHIDA-IQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~-i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                      ...+++....++++|++||.+              ..+... |.++.++|.-.-|+++. ++.+..|--
T Consensus       231 ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  231 LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ  298 (307)
T ss_pred             eeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence            456777778899999999998              233333 78999999877777665 455566643

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.7e-23  Score=159.45  Aligned_cols=180  Identities=21%  Similarity=0.338  Sum_probs=146.1

Q ss_pred             CceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVW   65 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~   65 (216)
                      .+.+..|..|...++++.|++. -.+|++||.||.|++||++..+...++.+....+                 ..|.+.
T Consensus       123 nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lq  202 (839)
T KOG0269|consen  123 NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQ  202 (839)
T ss_pred             chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEE
Confidence            3455678899999999999995 4789999999999999999988777777655544                 899999


Q ss_pred             EEECCC-cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee--EEeecccccccccceEEEeeeecCe
Q 043942           66 MWNADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF--HAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        66 i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      +||++. .++...+.+|.++|.|+.|+|++.+||||++|+.|++||+.+++..  .++.                ...++
T Consensus       203 lWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn----------------Tiapv  266 (839)
T KOG0269|consen  203 LWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN----------------TIAPV  266 (839)
T ss_pred             EeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe----------------eccee
Confidence            999995 4667888999999999999999999999999999999999876543  3333                56789


Q ss_pred             EEEEeCCCCcE-EEEecc--cCeE---------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcccc
Q 043942          143 TCLSWPGTSKY-LVTGCV--DGKV---------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       143 ~~~~~~~~~~~-l~~~~~--~~~i---------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      .+++|-|..++ |++++.  |-.|               ..|...++.++|.. |...+.+++.|++|..-.+++.
T Consensus       267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            99999997664 565554  3333               78889999999965 4567889999999876655543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=3.8e-22  Score=145.35  Aligned_cols=172  Identities=19%  Similarity=0.338  Sum_probs=141.0

Q ss_pred             ccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCc----------eEEEEeCCCCcc-----------------cCcE
Q 043942           12 GHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRN----------LQCTVEGPRGGI-----------------EDST   63 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~----------~~~~~~~~~~~~-----------------~~~~   63 (216)
                      .|.+.|+.+.+-|+. ..+|+.+..+.|.|||...-.          .-..+.+|....                 .|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            599999999999965 577788889999999986532          112566666521                 8999


Q ss_pred             EEEEECCCc-------ceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCC--CceeEEeecccccccccceE
Q 043942           64 VWMWNADRG-------AYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKG--GENFHAIRRSSLEFSLNYWM  133 (216)
Q Consensus        64 v~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~  133 (216)
                      |++||++..       .+...+.+|...|..++|++ +..++++++.|+.+.+||+++  .+.......           
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-----------  270 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-----------  270 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-----------
Confidence            999999743       23456789999999999999 556889999999999999995  344444444           


Q ss_pred             EEeeeecCeEEEEeCC-CCcEEEEecccCeE---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEc
Q 043942          134 ICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEI  196 (216)
Q Consensus       134 ~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~  196 (216)
                          |..++.+++|+| ++..||+|+.|+++               .+|...|.++.|+|+. ..|++++.|+.+.|||+
T Consensus       271 ----h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  271 ----HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             ----cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence                999999999999 55678899999998               7899999999999975 67889999999999999


Q ss_pred             cc
Q 043942          197 AE  198 (216)
Q Consensus       197 ~~  198 (216)
                      ..
T Consensus       347 s~  348 (422)
T KOG0264|consen  347 SR  348 (422)
T ss_pred             cc
Confidence            76

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.2e-22  Score=137.79  Aligned_cols=173  Identities=21%  Similarity=0.322  Sum_probs=145.4

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC---ceEEEEeCCCCcc------------------cCcEEEEEE
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR---NLQCTVEGPRGGI------------------EDSTVWMWN   68 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~------------------~~~~v~i~d   68 (216)
                      -..|.+.|.++...--|++||||+.|++|+|+..++.   +.+.++.+|.+++                  .|+.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3479999999999999999999999999999999765   5678899999887                  899999999


Q ss_pred             CCCcc--eeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCC-ce--eEEeecccccccccceEEEeeeecC
Q 043942           69 ADRGA--YLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGG-EN--FHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        69 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      -+.++  .......|...|++++|.|.  |-.|++++.||.|.+.+.++. ..  ......               |.-.
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a---------------H~~G  151 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA---------------HEIG  151 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc---------------cccc
Confidence            88774  34556789999999999995  568899999999999998854 11  122222               8889


Q ss_pred             eEEEEeCCC---C-----------cEEEEecccCeE----------------EeeeCCEEEEEEecCC----CeEEEEeC
Q 043942          142 VTCLSWPGT---S-----------KYLVTGCVDGKV----------------DGHIDAIQSLSVSAIR----ESLVSVSV  187 (216)
Q Consensus       142 v~~~~~~~~---~-----------~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~----~~l~s~~~  187 (216)
                      +++++|.|.   |           +.|++|+.|..+                .+|...|..++|.|.-    .+|++|++
T Consensus       152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq  231 (299)
T KOG1332|consen  152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ  231 (299)
T ss_pred             cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence            999999885   4           459999999988                7899999999999964    58999999


Q ss_pred             CCcEEEEEcc
Q 043942          188 DGTARVFEIA  197 (216)
Q Consensus       188 d~~v~vw~~~  197 (216)
                      ||++.||-..
T Consensus       232 Dg~viIwt~~  241 (299)
T KOG1332|consen  232 DGTVIIWTKD  241 (299)
T ss_pred             CCcEEEEEec
Confidence            9999999876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.9e-22  Score=151.33  Aligned_cols=144  Identities=22%  Similarity=0.368  Sum_probs=125.6

Q ss_pred             ceeEEeeccccceEEEEE-ccCCCEEEEEcCCCcEEEEECCCCc--eEEEEe---------CCCCcc-------------
Q 043942            5 DWASEILGHKDSFSSLAF-STDGQLLASGGFHGLVQNRDTSSRN--LQCTVE---------GPRGGI-------------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~---------~~~~~~-------------   59 (216)
                      -+..+++.|++-|.|+++ .++..++|+|+-|+.|.+||++++.  .+..+.         ++..++             
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv  187 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV  187 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence            356678899999999999 7888999999999999999999772  222221         222222             


Q ss_pred             ---cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942           60 ---EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT  136 (216)
Q Consensus        60 ---~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (216)
                         .++.+++||.++.+.+..+++|+..|.++..++||+.+++++.||+|++||+...+++.++..              
T Consensus       188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v--------------  253 (735)
T KOG0308|consen  188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV--------------  253 (735)
T ss_pred             ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe--------------
Confidence               678899999999999999999999999999999999999999999999999999999998887              


Q ss_pred             eeecCeEEEEeCCCCcEEEEecccCeE
Q 043942          137 SLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                       |...|.++.-+|+-.++++|+.||.|
T Consensus       254 -H~e~VWaL~~~~sf~~vYsG~rd~~i  279 (735)
T KOG0308|consen  254 -HKEGVWALQSSPSFTHVYSGGRDGNI  279 (735)
T ss_pred             -ccCceEEEeeCCCcceEEecCCCCcE
Confidence             88889999999999999999999988

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=9.9e-22  Score=151.10  Aligned_cols=175  Identities=23%  Similarity=0.365  Sum_probs=148.0

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------cCcEEEEEECCCc
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------EDSTVWMWNADRG   72 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------~~~~v~i~d~~~~   72 (216)
                      +....+.+++.+|+|++||+|..-|+++||++.+.+....++.|+..+                   .|+-|++||....
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            345679999999999999999999999999999999988888888876                   7888999997532


Q ss_pred             -ceeeeeeccC-------------------------------------------------CCeeEEEEcCCCcEEEEecC
Q 043942           73 -AYLNMFSGHG-------------------------------------------------SGLTCGDFTTDGKTICTGSD  102 (216)
Q Consensus        73 -~~~~~~~~~~-------------------------------------------------~~v~~~~~~~~~~~l~t~~~  102 (216)
                       .+++++.+|.                                                 ..+..++..|..+++++++.
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence             2222222222                                                 24566777777788999999


Q ss_pred             CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeC
Q 043942          103 NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHID  168 (216)
Q Consensus       103 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~  168 (216)
                      |+.|++||+.++++.+.|+...            ++.+....+...|.|.|+++.+.|..+              .+|..
T Consensus       617 Drnirif~i~sgKq~k~FKgs~------------~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE  684 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSR------------DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE  684 (1080)
T ss_pred             ccceEEEeccccceeeeecccc------------cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch
Confidence            9999999999999999998743            266788899999999999999999988              79999


Q ss_pred             CEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       169 ~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      .|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       685 ~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  685 AVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             heeeeeecccchhheeecCCceEEEEECch
Confidence            999999999999999999999999999753

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1e-22  Score=157.06  Aligned_cols=147  Identities=16%  Similarity=0.283  Sum_probs=118.9

Q ss_pred             eEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CC
Q 043942           17 FSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DG   94 (216)
Q Consensus        17 v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~   94 (216)
                      +..+.|+. +.++|||++..|.|.+||+...-                       ..+.+..+..|...++++.|++ ..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------------------rnk~l~~f~EH~Rs~~~ldfh~tep  146 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----------------------RNKLLTVFNEHERSANKLDFHSTEP  146 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccc-----------------------cchhhhHhhhhccceeeeeeccCCc
Confidence            34456654 44677777766666555554210                       1345567888999999999998 45


Q ss_pred             cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecccCeE----------
Q 043942           95 KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV----------  163 (216)
Q Consensus        95 ~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i----------  163 (216)
                      .+|++|+.||.|++||++..+...++..               ....|+.+.|+| .+.+++++.+.|.+          
T Consensus       147 ~iliSGSQDg~vK~~DlR~~~S~~t~~~---------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r  211 (839)
T KOG0269|consen  147 NILISGSQDGTVKCWDLRSKKSKSTFRS---------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR  211 (839)
T ss_pred             cEEEecCCCceEEEEeeecccccccccc---------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchh
Confidence            6889999999999999999998888876               678899999998 56788889999988          


Q ss_pred             -----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          164 -----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       164 -----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                           .+|.++|.++.|+|++.+|||||.|++|+||+..+.+.
T Consensus       212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence                 79999999999999999999999999999999986543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.1e-21  Score=139.69  Aligned_cols=192  Identities=18%  Similarity=0.203  Sum_probs=155.6

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-Ccc----------------cCcEEEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-GGI----------------EDSTVWMW   67 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~~----------------~~~~v~i~   67 (216)
                      ++.+++.+|..+|..+.||||.++|++|+.|..+.+||..+|+....+.... ...                .|+++..|
T Consensus       260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~w  339 (519)
T KOG0293|consen  260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMW  339 (519)
T ss_pred             eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEe
Confidence            4678899999999999999999999999999999999999998877765441 111                88999999


Q ss_pred             ECCCcceeeeeeccC-CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           68 NADRGAYLNMFSGHG-SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        68 d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      |+.. .....+++.. ..|.+++..+||+++++.+.|..|++++..+......+.                ...+|++++
T Consensus       340 dlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis----------------e~~~its~~  402 (519)
T KOG0293|consen  340 DLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS----------------EEQPITSFS  402 (519)
T ss_pred             cCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc----------------ccCceeEEE
Confidence            9873 3444555443 468999999999999999999999999988765554444                568899999


Q ss_pred             eCCCCcEEEEecccCeE--------------EeeeC--CEEEEEEec-CCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          147 WPGTSKYLVTGCVDGKV--------------DGHID--AIQSLSVSA-IRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i--------------~~~~~--~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      .+.+++++++--.+..+              .+|..  .+..-||-- +..++++||+|+.|+||+..+++++..+++|+
T Consensus       403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs  482 (519)
T KOG0293|consen  403 ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS  482 (519)
T ss_pred             EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc
Confidence            99999999887777766              44433  455556654 45899999999999999999999999999988


Q ss_pred             eeEE
Q 043942          210 FKLF  213 (216)
Q Consensus       210 ~~~~  213 (216)
                      ..+-
T Consensus       483 ~~vN  486 (519)
T KOG0293|consen  483 KTVN  486 (519)
T ss_pred             ceee
Confidence            6543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=9.8e-21  Score=147.35  Aligned_cols=128  Identities=20%  Similarity=0.243  Sum_probs=111.6

Q ss_pred             cCcEEEEEECCCcceeeee---eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942           60 EDSTVWMWNADRGAYLNMF---SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT  136 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (216)
                      +.|.|-+|+++.|.....+   ..|.++|+.++....++.+++++.+|.+++||+.+...+..+.               
T Consensus       468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~---------------  532 (910)
T KOG1539|consen  468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR---------------  532 (910)
T ss_pred             cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec---------------
Confidence            6788888888888777777   4799999999999999999999999999999999888777776               


Q ss_pred             eeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          137 SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                       ...++.++..+.....++.+.+|-.|              .+|...|++++|||||++|++++.|++|++||+.++..+
T Consensus       533 -l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  533 -LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             -cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence             45677888888877788887777666              789999999999999999999999999999999998876


Q ss_pred             e
Q 043942          203 T  203 (216)
Q Consensus       203 ~  203 (216)
                      -
T Consensus       612 D  612 (910)
T KOG1539|consen  612 D  612 (910)
T ss_pred             e
Confidence            4

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.6e-21  Score=136.24  Aligned_cols=178  Identities=17%  Similarity=0.289  Sum_probs=152.5

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~   69 (216)
                      ++..|++|.+.|.+..|-..|+.+++++.|.+..+||.++++.+..+.+|....                .|.+.++||.
T Consensus       264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF  343 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF  343 (481)
T ss_pred             eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccc
Confidence            567889999999999999999999999999999999999999999999988765                8999999999


Q ss_pred             CCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           70 DRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        70 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      +.. ..+..|++|...|+++.|..+ ..+++|++|.+|++||+++.+. +.++.                ...+++.++.
T Consensus       344 ReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR----------------tdS~~NRvav  406 (481)
T KOG0300|consen  344 REAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR----------------TDSPANRVAV  406 (481)
T ss_pred             hhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee----------------cCCccceeEe
Confidence            853 456789999999999999975 4688999999999999998754 55665                5677888888


Q ss_pred             CCCCcEEEEecccCeE------------------EeeeCCEEEEEEecCC--CeEEEEeCCCcEEEEEccccc
Q 043942          148 PGTSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIR--ESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~--~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +..+..|+.--++..+                  ++|..-|.+++|..+.  .-|++|+.|..+.-|++....
T Consensus       407 s~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  407 SKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             ecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence            8877788877777666                  7899999999997654  357899999999999987643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.88  E-value=1.3e-21  Score=145.22  Aligned_cols=174  Identities=17%  Similarity=0.243  Sum_probs=130.3

Q ss_pred             EeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEE-EeCCCC---------------------cccCcEEE
Q 043942            9 EILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCT-VEGPRG---------------------GIEDSTVW   65 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~---------------------~~~~~~v~   65 (216)
                      .-+||...++|-+|+|+. +.|+|++.||++|+||++..+.... +.....                     +..||.|.
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ  342 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ  342 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence            346899999999999954 6899999999999999987643322 211110                     11899999


Q ss_pred             EEECCCc--ce-eeeeeccCC--CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeee
Q 043942           66 MWNADRG--AY-LNMFSGHGS--GLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        66 i~d~~~~--~~-~~~~~~~~~--~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      +|+....  ++ ...-.+|..  .|+|++|+++|++|++-+.|+++++||+++.+. +.....-.             ..
T Consensus       343 ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-------------t~  409 (641)
T KOG0772|consen  343 IWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-------------TP  409 (641)
T ss_pred             eeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC-------------cc
Confidence            9997532  22 223346776  899999999999999999999999999997653 33333211             34


Q ss_pred             cCeEEEEeCCCCcEEEEecc------cCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          140 DGVTCLSWPGTSKYLVTGCV------DGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~------~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      .+-+.++|+|+.++|++|..      .|.+              .-....|..+.|+|.-+.|+.++.||+++||=
T Consensus       410 ~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  410 FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            56678999999999999864      2323              22256789999999988899999999998863

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=7.6e-21  Score=147.86  Aligned_cols=188  Identities=16%  Similarity=0.152  Sum_probs=143.9

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~   67 (216)
                      .+++..++||.+.|.++.||.+ ++|++++.|.+||+|++...++++.+.-...--                -|+.++||
T Consensus       359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLW  437 (712)
T ss_pred             ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEe
Confidence            3678889999999999999986 589999999999999999999988876433211                79999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      ++...+.+.-.. -..-|++++|.|||+..+.|+.+|.+++|++...+....+........      ...+. .|+.+.|
T Consensus       438 sI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K------k~~~~-rITG~Q~  509 (712)
T KOG0283|consen  438 SISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK------KKQGK-RITGLQF  509 (712)
T ss_pred             ecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc------cccCc-eeeeeEe
Confidence            999776655444 447899999999999999999999999999998777665543110000      00023 7999999


Q ss_pred             CCCC-cEEEEecccCeE--------------Eee--eCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          148 PGTS-KYLVTGCVDGKV--------------DGH--IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       148 ~~~~-~~l~~~~~~~~i--------------~~~--~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      .|.. ..+++.+.|..|              .++  ...-....|+.||++|+++++|..|++|++....
T Consensus       510 ~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  510 FPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             cCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            8744 346666677666              111  1233567899999999999999999999985543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.88  E-value=5e-21  Score=146.26  Aligned_cols=174  Identities=22%  Similarity=0.346  Sum_probs=147.1

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWM   66 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i   66 (216)
                      .++++..+|++|+..|.|++...++. +++||.|.++++|-....  ...+++|...+               .|.+|++
T Consensus        89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIkl  165 (745)
T KOG0301|consen   89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVASLPENTYVTGSADKTIKL  165 (745)
T ss_pred             CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hcccCCcchheeeeeecCCCcEEeccCcceeee
Confidence            35678899999999999999888887 999999999999986543  33467777655               8999999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      |.-  ++.++++.+|...|+.+++-+++ .+++++.||.|+.|++ +|..+.+...               |...++++.
T Consensus       166 Wk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~g---------------htn~vYsis  226 (745)
T KOG0301|consen  166 WKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHG---------------HTNFVYSIS  226 (745)
T ss_pred             ccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeec---------------cceEEEEEE
Confidence            987  67888999999999999999764 5788999999999999 5888888877               999999999


Q ss_pred             eCCCCcEEEEecccCeE-----------Eeee-CCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          147 WPGTSKYLVTGCVDGKV-----------DGHI-DAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i-----------~~~~-~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ...++..++++++|+.+           ..|. ..|+++.+-++|. +++|+.||.||||....
T Consensus       227 ~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  227 MALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             ecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            88888999999999998           2232 3788888888888 56677799999998764

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.2e-22  Score=155.77  Aligned_cols=167  Identities=21%  Similarity=0.364  Sum_probs=150.6

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~   70 (216)
                      +..|.+|..+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|...+                .|..+++||++
T Consensus        63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R  142 (825)
T KOG0267|consen   63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR  142 (825)
T ss_pred             hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence            44578999999999999999999999999999999999998888777766544                78999999999


Q ss_pred             CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      ..-+...+.+|...+.+++|+|+|++++.++.|..+++||...|+...+|+.               |...+..+.|+|.
T Consensus       143 k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~---------------~e~~v~sle~hp~  207 (825)
T KOG0267|consen  143 KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS---------------HEGKVQSLEFHPL  207 (825)
T ss_pred             ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc---------------ccccccccccCch
Confidence            8889999999999999999999999999999999999999999999999987               9999999999999


Q ss_pred             CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942          151 SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVD  188 (216)
Q Consensus       151 ~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d  188 (216)
                      .-.++.|+.|+.+              ......|.+..|+|+++.+.+|.++
T Consensus       208 e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  208 EVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             hhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            9999999999988              2235689999999999988877554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2.9e-20  Score=130.03  Aligned_cols=186  Identities=23%  Similarity=0.331  Sum_probs=138.1

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC----ceEEEEeCCCCcc------------------cCcEEEEEEC
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR----NLQCTVEGPRGGI------------------EDSTVWMWNA   69 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~~------------------~~~~v~i~d~   69 (216)
                      +|.+-|.++.|.+.|+.+|||+.|++|+|||.++.    .+....+.|.+.+                  .|+++.||.=
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            79999999999999999999999999999997543    4555667777665                  8999999985


Q ss_pred             CC---------cceeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCcee------EEeec----------
Q 043942           70 DR---------GAYLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGENF------HAIRR----------  122 (216)
Q Consensus        70 ~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~------~~~~~----------  122 (216)
                      ..         -....++......|+++.|.|.  |-.+++++.||.+++|+.-+...+      .++..          
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~  170 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ  170 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence            21         1233456667789999999994  668899999999999987643222      11110          


Q ss_pred             -------ccc------------c------------ccccc--e---EEEeeeecCeEEEEeCCCC----cEEEEecccCe
Q 043942          123 -------SSL------------E------------FSLNY--W---MICTSLYDGVTCLSWPGTS----KYLVTGCVDGK  162 (216)
Q Consensus       123 -------~~~------------~------------~~~~~--~---~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~  162 (216)
                             ...            +            +....  +   ....++.++|++++|.|+-    ..|++++.||.
T Consensus       171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv  250 (361)
T KOG2445|consen  171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGV  250 (361)
T ss_pred             cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcE
Confidence                   000            0            00000  0   0112378899999999853    46889999972


Q ss_pred             E---------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          163 V---------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       163 i---------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      -                                 ..|.+.|..+.|+-.|..|++.|.||+||+|...
T Consensus       251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            1                                 6788999999999999999999999999999753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=3e-20  Score=133.93  Aligned_cols=176  Identities=17%  Similarity=0.234  Sum_probs=138.4

Q ss_pred             EeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCC-------ceEEEEeCCCCcc-----------------cCcE
Q 043942            9 EILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSR-------NLQCTVEGPRGGI-----------------EDST   63 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~~-----------------~~~~   63 (216)
                      .+.||.++|..++|+| +.+.+|+||.|.+|+||++..+       +.+..+.+|...+                 .|++
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4568999999999999 5678999999999999998765       4566777777655                 8999


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee-cCe
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY-DGV  142 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v  142 (216)
                      |.+||+.++..+.++. |...|.++.|+.||.+++|++.|+.|++||.++++.+.+-..               |. ..-
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~---------------heG~k~  219 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA---------------HEGAKP  219 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc---------------ccCCCc
Confidence            9999999999988888 999999999999999999999999999999999998887754               32 233


Q ss_pred             EEEEeCCCCcEEEEecc---cCeE----------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEccccc
Q 043942          143 TCLSWPGTSKYLVTGCV---DGKV----------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEFR  200 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~---~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~~  200 (216)
                      ..+.|-.+|.++.+|..   +..+                ....+.|.---|+|+...+..++ .|+.||-|.+.+..
T Consensus       220 ~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  220 ARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            44556666664444432   2222                22345566666788888777655 59999999987654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=2e-21  Score=146.46  Aligned_cols=174  Identities=18%  Similarity=0.264  Sum_probs=144.2

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc------------c--------------
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG------------I--------------   59 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~------------~--------------   59 (216)
                      +...+++|.+.|.+++..|.|.+|++|+.||+|+||.+.++.++.++......            +              
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            34567899999999999999999999999999999999999988776542210            0              


Q ss_pred             --------------------------------------------------------------------------------
Q 043942           60 --------------------------------------------------------------------------------   59 (216)
Q Consensus        60 --------------------------------------------------------------------------------   59 (216)
                                                                                                      
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence                                                                                            


Q ss_pred             ---------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeE
Q 043942           60 ---------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL  106 (216)
Q Consensus        60 ---------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i  106 (216)
                                                       ....|++||+.....+..+......|..++.+|.|..|+.++.|+.+
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~  631 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM  631 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence                                             45556666666555555555455678999999999999999999999


Q ss_pred             EEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------------
Q 043942          107 SIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------------  163 (216)
Q Consensus       107 ~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------------  163 (216)
                      ..+|+.-. +..+.+..               |...++.++|++.-.++++|+.||.+                      
T Consensus       632 ~WfDldlsskPyk~lr~---------------H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~  696 (733)
T KOG0650|consen  632 CWFDLDLSSKPYKTLRL---------------HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR  696 (733)
T ss_pred             EEEEcccCcchhHHhhh---------------hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence            99999854 45556665               89999999999999999999999987                      


Q ss_pred             -EeeeCC----EEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          164 -DGHIDA----IQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       164 -~~~~~~----i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                       .+|...    |..+.|+|...+|++++.||+|++|
T Consensus       697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence             455544    8999999999999999999999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=8.7e-21  Score=132.17  Aligned_cols=152  Identities=20%  Similarity=0.375  Sum_probs=119.0

Q ss_pred             eccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc-------c-----------cCcEEEEEECCC
Q 043942           11 LGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG-------I-----------EDSTVWMWNADR   71 (216)
Q Consensus        11 ~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-------~-----------~~~~v~i~d~~~   71 (216)
                      .+|+..|.++.|-| |.-.|.+++.|.+++|||.++.+..-.+..+...       +           .+-.|++.|+..
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence            36888999999999 6678999999999999999998877666543321       1           788999999999


Q ss_pred             cceeeeeeccCCCeeEEEEcCCCcE-EEEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           72 GAYLNMFSGHGSGLTCGDFTTDGKT-ICTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      |...+.+.+|...|.++.|+|...+ |++|+.||.|++||++.- .+...+........+ .......|.+.++.++|+.
T Consensus       178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p-~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP-ILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc-cccccccccceeeeeeecc
Confidence            9999999999999999999997765 679999999999999865 333333321111000 0112234888999999999


Q ss_pred             CCcEEEEecccCeE
Q 043942          150 TSKYLVTGCVDGKV  163 (216)
Q Consensus       150 ~~~~l~~~~~~~~i  163 (216)
                      ++.++++++.|..+
T Consensus       257 d~~~l~~~gtd~r~  270 (397)
T KOG4283|consen  257 DARYLASCGTDDRI  270 (397)
T ss_pred             cchhhhhccCccce
Confidence            99999999888877

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=5.7e-21  Score=136.78  Aligned_cols=157  Identities=19%  Similarity=0.284  Sum_probs=127.3

Q ss_pred             CceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccC
Q 043942            4 GDWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHG   82 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~   82 (216)
                      .+++.++.+|...=+.++|||-. ..|+||.--+.|++|...++.                   |-+.    ...+.+|+
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~-------------------W~vd----~~Pf~gH~  257 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS-------------------WKVD----QRPFTGHT  257 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCc-------------------eeec----Cccccccc
Confidence            46788999999999999999932 358888877788888776543                   2221    12356799


Q ss_pred             CCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEE--eecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942           83 SGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHA--IRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus        83 ~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      ..|-.+.|+|.. ..+++|+.||+|++||++.+.....  .+.               |...|+.+.|+.+-.+|++|+.
T Consensus       258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA---------------h~sDVNVISWnr~~~lLasG~D  322 (440)
T KOG0302|consen  258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA---------------HNSDVNVISWNRREPLLASGGD  322 (440)
T ss_pred             cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec---------------cCCceeeEEccCCcceeeecCC
Confidence            999999999954 5789999999999999998843222  233               8899999999998889999999


Q ss_pred             cCeE-----------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccc
Q 043942          160 DGKV-----------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       160 ~~~i-----------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~  198 (216)
                      ||.+                 .-|..+|+++.|+|.. ..|+++|.|..|.+||+.-
T Consensus       323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            9988                 6789999999999965 5677888999999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=1.1e-18  Score=128.85  Aligned_cols=204  Identities=13%  Similarity=0.083  Sum_probs=139.4

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV   64 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v   64 (216)
                      ++++.+..+..|. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+....                .++.+
T Consensus        19 ~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l   97 (300)
T TIGR03866        19 ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLV   97 (300)
T ss_pred             CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeE
Confidence            4677888887664 46789999999876 567788999999999988776654432211                57899


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC-eEEEEeCCCCceeEEeecc----cccccccceEE--Eee
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA-TLSIWNPKGGENFHAIRRS----SLEFSLNYWMI--CTS  137 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~-~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~--~~~  137 (216)
                      ++||+++++.+..+.. ...+.+++|+|+++.+++++.++ .+.+||.++++........    ...+.+....+  ...
T Consensus        98 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866        98 TVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence            9999998877776653 34578899999999999888765 5777898877654432210    01111111100  000


Q ss_pred             ---------------------e-------ecCeEEEEeCCCCcEEEEe-cccCeE-------------EeeeCCEEEEEE
Q 043942          138 ---------------------L-------YDGVTCLSWPGTSKYLVTG-CVDGKV-------------DGHIDAIQSLSV  175 (216)
Q Consensus       138 ---------------------~-------~~~v~~~~~~~~~~~l~~~-~~~~~i-------------~~~~~~i~~~~~  175 (216)
                                           +       ......++|+|++++++++ +.++.+             ..+...+.+++|
T Consensus       177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  256 (300)
T TIGR03866       177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF  256 (300)
T ss_pred             CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE
Confidence                                 0       0012357789999975543 334434             234567889999


Q ss_pred             ecCCCeEEEE-eCCCcEEEEEcccccceeecCC
Q 043942          176 SAIRESLVSV-SVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       176 ~~~~~~l~s~-~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      +|+|++|+++ +.++.|++||+.+++....++.
T Consensus       257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence            9999999876 4689999999999887665543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.86  E-value=4.4e-20  Score=141.20  Aligned_cols=191  Identities=23%  Similarity=0.340  Sum_probs=159.5

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEE--EEeCCCCcc------------------cCc
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC--TVEGPRGGI------------------EDS   62 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~~------------------~~~   62 (216)
                      .-++.+.+.+|+..|..++..+. ..++++|.||++++|+-...+.+.  .++.|.+.+                  .|.
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            45677899999999998887764 489999999999999986665443  222222211                  789


Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      ++.+|...+..++..+++|...|.+++...++. +++||.|.++++|...  +....+.+               |+..|
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~g---------------H~asV  143 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQG---------------HTASV  143 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCC---------------cchhe
Confidence            999999999999999999999999999887776 9999999999999754  44555665               99999


Q ss_pred             EEEEeCCCCcEEEEecccCeE------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF  210 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~  210 (216)
                      .++..-|++ .+++|+.|..|            .+|..-|..+++-+++. +++|+.||.|+.|++ +++.+.+.-.|..
T Consensus       144 WAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn  220 (745)
T KOG0301|consen  144 WAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTN  220 (745)
T ss_pred             eeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccce
Confidence            999998887 78899999988            78999999999987755 788999999999999 7888888888887


Q ss_pred             eEEEe
Q 043942          211 KLFFL  215 (216)
Q Consensus       211 ~~~~~  215 (216)
                      .+|.+
T Consensus       221 ~vYsi  225 (745)
T KOG0301|consen  221 FVYSI  225 (745)
T ss_pred             EEEEE
Confidence            77764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.86  E-value=5.7e-21  Score=141.64  Aligned_cols=165  Identities=20%  Similarity=0.249  Sum_probs=144.3

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeee
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~   78 (216)
                      -..+.++.+||.+..+++..||.|.|||+.+...++.+++|..+.                -|++|+.||+++++.+...
T Consensus       510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh  589 (705)
T KOG0639|consen  510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH  589 (705)
T ss_pred             hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh
Confidence            346778899999999999999999999999999999999998876                7999999999999877654


Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                      . ....|.++.++|++.+++.|-..+.+.+...... ....+..               |...|.++.|.+.|+++++.+
T Consensus       590 d-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhl---------------heScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  590 D-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHL---------------HESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             h-hhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecc---------------cccEEEEEEecccCceeeecC
Confidence            4 4578999999999999999999999999887643 3444444               889999999999999999999


Q ss_pred             ccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          159 VDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       159 ~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                      .|..+             ..-...|.++.+|.|.+|++||+.|++-.||.+
T Consensus       653 kDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             chhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99887             334578999999999999999999999998875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=3.1e-20  Score=135.91  Aligned_cols=181  Identities=20%  Similarity=0.278  Sum_probs=154.9

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE-Ee-----------------CCCCcc---------
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT-VE-----------------GPRGGI---------   59 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~-----------------~~~~~~---------   59 (216)
                      .+.+..|.-+|.+++++|+.++.++++.+++|.-|+..+++.... ++                 .|...+         
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            456778999999999999999999999999999999998864411 11                 111111         


Q ss_pred             -------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccce
Q 043942           60 -------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYW  132 (216)
Q Consensus        60 -------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  132 (216)
                             .|..|.||+.++.+.++.+.+|.+.|.+++|-.....+.+++.|+.+++|+++....+.++..          
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG----------  284 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG----------  284 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC----------
Confidence                   788899999999999999999999999999998888999999999999999998888888877          


Q ss_pred             EEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          133 MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                           |++.|..+.....++.+-+|+.|+++             .++.+.+.+++|-.+ ..+++||.+|.|.+|++...
T Consensus       285 -----Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  285 -----HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             -----CccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence                 99999999988888888888899987             677789999999554 56899999999999999887


Q ss_pred             ccee
Q 043942          200 RRAT  203 (216)
Q Consensus       200 ~~~~  203 (216)
                      +++.
T Consensus       359 kplf  362 (479)
T KOG0299|consen  359 KPLF  362 (479)
T ss_pred             Ccee
Confidence            7764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-19  Score=131.90  Aligned_cols=178  Identities=15%  Similarity=0.231  Sum_probs=138.4

Q ss_pred             ceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEE--EeCCCC------------cc-----cCcEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCT--VEGPRG------------GI-----EDSTV   64 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~------------~~-----~~~~v   64 (216)
                      ..++.+.--..+|.+.+|.|+|+ .+++++.....+.||+.+.+..+.  ..+...            ..     ..|.|
T Consensus       248 ~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I  327 (514)
T KOG2055|consen  248 PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI  327 (514)
T ss_pred             hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceE
Confidence            45566666678999999999998 899999999999999988754432  112111            11     77888


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      .+....+++.+..++ -.+.|..+.|+.+++.|+.++.+|.|.+||++....++.+....              .-.-+.
T Consensus       328 ~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G--------------~v~gts  392 (514)
T KOG2055|consen  328 HLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG--------------SVHGTS  392 (514)
T ss_pred             Eeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC--------------ccceee
Confidence            888888888888887 56889999999999999999999999999999998888886421              112345


Q ss_pred             EEeCCCCcEEEEecccCeE-------------------------------------------------------------
Q 043942          145 LSWPGTSKYLVTGCVDGKV-------------------------------------------------------------  163 (216)
Q Consensus       145 ~~~~~~~~~l~~~~~~~~i-------------------------------------------------------------  163 (216)
                      ++.++++.++|+|+..|.+                                                             
T Consensus       393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF  472 (514)
T KOG2055|consen  393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF  472 (514)
T ss_pred             eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee
Confidence            5666677777777777666                                                             


Q ss_pred             ------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          164 ------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       164 ------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                            ...-+.|++++|+|.+-+|+.|..+|.+.+|.+.
T Consensus       473 sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  473 SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence                  1223578999999999999999999999999875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.85  E-value=2.7e-20  Score=142.37  Aligned_cols=110  Identities=21%  Similarity=0.314  Sum_probs=100.1

Q ss_pred             eeeeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           75 LNMFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ++++.+|...|.+++.+|+++++|+++..     ..|++|+..+...++.+..               |.-.|+.++|+|
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~---------------HsLTVT~l~FSp  582 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG---------------HSLTVTRLAFSP  582 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc---------------cceEEEEEEECC
Confidence            34566899999999999999999999865     3499999999888888887               999999999999


Q ss_pred             CCcEEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          150 TSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       150 ~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      |+++|++.+.|+.+                  ..|..-|.++.|+|++.+++|+|.|++|++|.....
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99999999999988                  678888999999999999999999999999998876

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.84  E-value=1.3e-19  Score=141.12  Aligned_cols=145  Identities=22%  Similarity=0.331  Sum_probs=127.1

Q ss_pred             CCCCceeEEe---eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCc
Q 043942            1 INQGDWASEI---LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDS   62 (216)
Q Consensus         1 l~~g~~~~~~---~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~   62 (216)
                      +++|-....+   .+|+++|..++....++.+++++.+|.++.||......+..++......               .+-
T Consensus       477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf  556 (910)
T KOG1539|consen  477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF  556 (910)
T ss_pred             cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence            3556666667   4899999999999999999999999999999999998777776544322               888


Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      .|+++|..+.+.++.+.+|.+.|++++|+|||++|++++.|++|++||+-++..+-.+.                ...+.
T Consensus       557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----------------vd~~~  620 (910)
T KOG1539|consen  557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----------------VDSPC  620 (910)
T ss_pred             eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----------------cCCcc
Confidence            99999999999999999999999999999999999999999999999999999888776                56778


Q ss_pred             EEEEeCCCCcEEEEecccC
Q 043942          143 TCLSWPGTSKYLVTGCVDG  161 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~  161 (216)
                      +.+.|+|+|.+||+...|+
T Consensus       621 ~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  621 TSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             eeeEECCCCCEEEEEEecC
Confidence            8899999999999887763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.84  E-value=6.2e-19  Score=123.12  Aligned_cols=172  Identities=15%  Similarity=0.171  Sum_probs=128.1

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEEECCC
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMWNADR   71 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~d~~~   71 (216)
                      ...|.++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..|..++                  .|.++++||++.
T Consensus        68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~  146 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS  146 (347)
T ss_pred             hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence            34689999999999999999999999999999999994 44555555544                  899999999999


Q ss_pred             cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccc----------------------
Q 043942           72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL----------------------  129 (216)
Q Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~----------------------  129 (216)
                      ..++.++. -.+.+.++..-  ...++++..++.|.+|+++++.........++..+.                      
T Consensus       147 ~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  147 SNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             CCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence            99998887 44667777653  457888889999999999765322111111110000                      


Q ss_pred             ---------cceEEEeeee---------cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEec
Q 043942          130 ---------NYWMICTSLY---------DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSA  177 (216)
Q Consensus       130 ---------~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~  177 (216)
                               ..-+.+.-|.         -.|++++|+|.-..|++++.||.+              ..|..+|++++|+.
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~  303 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR  303 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC
Confidence                     0001111122         247789999999999999999998              67889999999999


Q ss_pred             CCCeEEEE
Q 043942          178 IRESLVSV  185 (216)
Q Consensus       178 ~~~~l~s~  185 (216)
                      +|.+++-+
T Consensus       304 ~G~ifaYA  311 (347)
T KOG0647|consen  304 NGSIFAYA  311 (347)
T ss_pred             CCCEEEEE
Confidence            99988744

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.9e-19  Score=126.50  Aligned_cols=146  Identities=20%  Similarity=0.250  Sum_probs=111.0

Q ss_pred             eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcE
Q 043942           17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKT   96 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~   96 (216)
                      -.|+.|++.|.+||.|..||.|.|||+.                          |...-+.+.+|..+|++++|+++|+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~--------------------------T~~iar~lsaH~~pi~sl~WS~dgr~   79 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFD--------------------------TFRIARMLSAHVRPITSLCWSRDGRK   79 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcc--------------------------ccchhhhhhccccceeEEEecCCCCE
Confidence            6799999999999999977776666654                          44445667899999999999999999


Q ss_pred             EEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc--EEEEecccCeE-----------
Q 043942           97 ICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK--YLVTGCVDGKV-----------  163 (216)
Q Consensus        97 l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~i-----------  163 (216)
                      |+|++.|..|.+||+..|.+++.+.                ...+|....|+|...  .+++--....+           
T Consensus        80 LltsS~D~si~lwDl~~gs~l~rir----------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~  143 (405)
T KOG1273|consen   80 LLTSSRDWSIKLWDLLKGSPLKRIR----------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV  143 (405)
T ss_pred             eeeecCCceeEEEeccCCCceeEEE----------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee
Confidence            9999999999999999999999887                566777777776332  22222221111           


Q ss_pred             -----Ee-eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          164 -----DG-HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       164 -----~~-~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                           .+ ....-.+..|++.|+++++|...|.+.++|..+.++...
T Consensus       144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas  190 (405)
T KOG1273|consen  144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS  190 (405)
T ss_pred             ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee
Confidence                 00 011112236889999999999999999999998877654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=7.1e-19  Score=128.36  Aligned_cols=168  Identities=20%  Similarity=0.299  Sum_probs=131.9

Q ss_pred             eEEEEEcc-------CCCEEEEEcCCCcEEEEECCCCceE---EEE------------------eCCCCcc---------
Q 043942           17 FSSLAFST-------DGQLLASGGFHGLVQNRDTSSRNLQ---CTV------------------EGPRGGI---------   59 (216)
Q Consensus        17 v~~~~~s~-------~~~~l~s~~~d~~v~vwd~~~~~~~---~~~------------------~~~~~~~---------   59 (216)
                      ..|++|..       .|+++|.|..|..|.|||+.-...+   .++                  .+|...+         
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            35666643       3579999999999999998643211   111                  1233222         


Q ss_pred             --------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccc
Q 043942           60 --------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSL  129 (216)
Q Consensus        60 --------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~  129 (216)
                              .|.+|++||+.++++..++..|...|.+++|+| ....|++|+.|+++.+.|.+.... -..+.        
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--------  327 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--------  327 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--------
Confidence                    899999999999999999999999999999999 567899999999999999995322 22232        


Q ss_pred             cceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEE
Q 043942          130 NYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTAR  192 (216)
Q Consensus       130 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~  192 (216)
                              ..+.|..++|.|... .++++..||.+               .+|..+|.++++++.- .++++++.|+.|+
T Consensus       328 --------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk  399 (463)
T KOG0270|consen  328 --------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK  399 (463)
T ss_pred             --------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence                    567899999998664 57777888988               7899999999998865 4678899999999


Q ss_pred             EEEccccc
Q 043942          193 VFEIAEFR  200 (216)
Q Consensus       193 vw~~~~~~  200 (216)
                      +|++....
T Consensus       400 lw~~~~~~  407 (463)
T KOG0270|consen  400 LWKFDVDS  407 (463)
T ss_pred             EEeecCCC
Confidence            99987644

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=4.5e-19  Score=123.29  Aligned_cols=178  Identities=17%  Similarity=0.249  Sum_probs=140.2

Q ss_pred             ceeEEee-ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce-EEEEeCCCCcc----------------------c
Q 043942            5 DWASEIL-GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL-QCTVEGPRGGI----------------------E   60 (216)
Q Consensus         5 ~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~----------------------~   60 (216)
                      +++..|. .+-+.|.|+.|.|++..+|+-. |..|.+|++..+.. ...+.......                      .
T Consensus       113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~  191 (370)
T KOG1007|consen  113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS  191 (370)
T ss_pred             hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence            3444554 4567899999999999999887 88999999988755 44433221111                      8


Q ss_pred             CcEEEEEECCCcceeeeee-ccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEee
Q 043942           61 DSTVWMWNADRGAYLNMFS-GHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ++++..||+++..+...++ +|...|..+.|+|+-+ +|++|+.|+.|++||.+..+ +++++..               
T Consensus       192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~---------------  256 (370)
T KOG1007|consen  192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG---------------  256 (370)
T ss_pred             CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC---------------
Confidence            9999999999877666554 6888899999999765 67899999999999999654 5677776               


Q ss_pred             eecCeEEEEeCCC-CcEEEEecccCeE-------------------------------------------EeeeCCEEEE
Q 043942          138 LYDGVTCLSWPGT-SKYLVTGCVDGKV-------------------------------------------DGHIDAIQSL  173 (216)
Q Consensus       138 ~~~~v~~~~~~~~-~~~l~~~~~~~~i-------------------------------------------~~~~~~i~~~  173 (216)
                      |..-|.++.|+|. .+++++++.|..+                                           ..|...|+++
T Consensus       257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~  336 (370)
T KOG1007|consen  257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL  336 (370)
T ss_pred             CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence            8999999999984 4677888888877                                           6788999999


Q ss_pred             EEecCCCe-EEEEeCCCcEEEEEccc
Q 043942          174 SVSAIRES-LVSVSVDGTARVFEIAE  198 (216)
Q Consensus       174 ~~~~~~~~-l~s~~~d~~v~vw~~~~  198 (216)
                      +||.-..+ +|+-+.||.+.|=.+..
T Consensus       337 aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  337 AWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             eeccCCCeeEEEeccCceEEeecCCh
Confidence            99987665 56778999998866543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=2.3e-19  Score=128.64  Aligned_cols=143  Identities=21%  Similarity=0.331  Sum_probs=111.3

Q ss_pred             EeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942            9 EILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTC   87 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~   87 (216)
                      .+.+|...|-.++|||. ...|++||-||+|+|||++.+...                       ..+ ..++|.+.|+.
T Consensus       252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~-----------------------~~~-~~kAh~sDVNV  307 (440)
T KOG0302|consen  252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK-----------------------AAV-STKAHNSDVNV  307 (440)
T ss_pred             cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc-----------------------cee-EeeccCCceee
Confidence            46679999999999995 468999998888888887765321                       122 23789999999


Q ss_pred             EEEcCCCcEEEEecCCCeEEEEeCCC---CceeEEeecccccccccceEEEeeeecCeEEEEeCCC-CcEEEEecccCeE
Q 043942           88 GDFTTDGKTICTGSDNATLSIWNPKG---GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKYLVTGCVDGKV  163 (216)
Q Consensus        88 ~~~~~~~~~l~t~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~i  163 (216)
                      |.|+.+..+||+|+.||++++||+++   ++++..|+.               |..+|+++.|+|. ...|++++.|..+
T Consensus       308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~---------------Hk~pItsieW~p~e~s~iaasg~D~Qi  372 (440)
T KOG0302|consen  308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY---------------HKAPITSIEWHPHEDSVIAASGEDNQI  372 (440)
T ss_pred             EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe---------------ccCCeeEEEeccccCceEEeccCCCcE
Confidence            99999888999999999999999986   456677776               9999999999984 5678888888877


Q ss_pred             ------------------------------Eee--eCCEEEEEEecCC-CeEEEEeCCCc
Q 043942          164 ------------------------------DGH--IDAIQSLSVSAIR-ESLVSVSVDGT  190 (216)
Q Consensus       164 ------------------------------~~~--~~~i~~~~~~~~~-~~l~s~~~d~~  190 (216)
                                                    ..|  ...+-.+.|+++- -++++.+.||-
T Consensus       373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             EEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence                                          223  2346677777753 36677777773

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=1.7e-19  Score=130.36  Aligned_cols=107  Identities=21%  Similarity=0.378  Sum_probs=81.5

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCe
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGL   85 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v   85 (216)
                      .+..|..|...|+++.|+|+|++||+|+.+|.|.+|....-...   .... + .+.     +-+.......+.+|...+
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~-e-~~~-----~ke~w~v~k~lr~h~~di  126 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---DADT-E-ADL-----NKEKWVVKKVLRGHRDDI  126 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---cccc-h-hhh-----CccceEEEEEecccccch
Confidence            45677789999999999999999999999999999987641111   0000 0 000     001123345677899999


Q ss_pred             eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           86 TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      ..++|+|++.++++++.|..+++||+..|+....+..
T Consensus       127 ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d  163 (434)
T KOG1009|consen  127 YDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD  163 (434)
T ss_pred             hhhhccCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence            9999999999999999999999999999988776654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.2e-18  Score=122.86  Aligned_cols=174  Identities=17%  Similarity=0.225  Sum_probs=126.8

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC---Cc
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD---RG   72 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~---~~   72 (216)
                      .|.-.|..+-....+.+|++++.|..|.+|++. |+.+..+......-                .-..|++|.+-   .|
T Consensus       185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG  263 (420)
T KOG2096|consen  185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG  263 (420)
T ss_pred             hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence            366677778888888999999999999999999 87777765432211                44557888863   22


Q ss_pred             -----ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCc----eeEEeecccccccccceEEEeeeecCeE
Q 043942           73 -----AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE----NFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        73 -----~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                           ..+..+++|...|..++|+++...++|.+.||++++||++-..    -...++..+.       ..+. ......
T Consensus       264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~-------pl~a-ag~~p~  335 (420)
T KOG2096|consen  264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA-------PLHA-AGSEPV  335 (420)
T ss_pred             chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc-------chhh-cCCCce
Confidence                 3456788999999999999999999999999999999987321    1111111100       0001 223344


Q ss_pred             EEEeCCCCcEEEEecc---------cCeE-----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          144 CLSWPGTSKYLVTGCV---------DGKV-----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~---------~~~i-----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      .+.++|+|..|+.+..         +|..     ..|...|++++|+++|+++++|+ |..+++..
T Consensus       336 RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  336 RLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             EEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            8888999988876533         2332     67899999999999999999997 78888875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=7e-19  Score=133.24  Aligned_cols=139  Identities=22%  Similarity=0.342  Sum_probs=126.2

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------cCcEEEEEEC
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------EDSTVWMWNA   69 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------~~~~v~i~d~   69 (216)
                      ++++|...|..++|++|+++||+|+.|+.+.|||....+....+..|...+                   .|++|++||.
T Consensus       296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~  375 (484)
T KOG0305|consen  296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT  375 (484)
T ss_pred             hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence            378899999999999999999999999999999998888888888888766                   8999999999


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      .++..+..+. ....|..|.|++..+.|+++.  .+..|.+|+..+.+.+..+..               |...|..+++
T Consensus       376 ~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g---------------H~~RVl~la~  439 (484)
T KOG0305|consen  376 NTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG---------------HTSRVLYLAL  439 (484)
T ss_pred             CCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC---------------CcceeEEEEE
Confidence            9999988876 567899999999987777654  677899999999888888887               9999999999


Q ss_pred             CCCCcEEEEecccCeE
Q 043942          148 PGTSKYLVTGCVDGKV  163 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i  163 (216)
                      +|||..+++|+.|.++
T Consensus       440 SPdg~~i~t~a~DETl  455 (484)
T KOG0305|consen  440 SPDGETIVTGAADETL  455 (484)
T ss_pred             CCCCCEEEEecccCcE
Confidence            9999999999999988

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=4.5e-17  Score=116.72  Aligned_cols=133  Identities=19%  Similarity=0.270  Sum_probs=112.4

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC---cc------------------cCcEEEEEECCCcc
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG---GI------------------EDSTVWMWNADRGA   73 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---~~------------------~~~~v~i~d~~~~~   73 (216)
                      .+|.++.++.  ++|+.+-.+. |+|||+++.+.+.+++....   +.                  ..|.|.+||..+-+
T Consensus        88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            4566777754  5677766554 99999999999888765411   11                  78999999999999


Q ss_pred             eeeeeeccCCCeeEEEEcCCCcEEEEecCCCe-EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNAT-LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      ++..+..|.+.+.+++|+++|.+|||++..|+ |+|+.+.+|+.+.+|....             ....|.+++|+|++.
T Consensus       165 ~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-------------~~~~IySL~Fs~ds~  231 (391)
T KOG2110|consen  165 PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-------------YPVSIYSLSFSPDSQ  231 (391)
T ss_pred             eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-------------eeeEEEEEEECCCCC
Confidence            99999999999999999999999999999988 8999999999999997532             456789999999999


Q ss_pred             EEEEecccCeE
Q 043942          153 YLVTGCVDGKV  163 (216)
Q Consensus       153 ~l~~~~~~~~i  163 (216)
                      +|.+.+..++|
T Consensus       232 ~L~~sS~TeTV  242 (391)
T KOG2110|consen  232 FLAASSNTETV  242 (391)
T ss_pred             eEEEecCCCeE
Confidence            99999999888

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.81  E-value=2.1e-18  Score=131.09  Aligned_cols=189  Identities=14%  Similarity=0.215  Sum_probs=127.8

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE--EeCCCCcc-----------------cCcEEEEEE
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT--VEGPRGGI-----------------EDSTVWMWN   68 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~~~-----------------~~~~v~i~d   68 (216)
                      +...+|...|..+.|.|....|++++.|.++++||+...++...  +.+|...+                 .|+.+.|||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            44558999999999999667899999999999999999888776  66666654                 899999999


Q ss_pred             CCCcc---------------------------eeeeeeccCCCeeE---EEEcCCCcEEEEecC-CCeEEEEeCCCCcee
Q 043942           69 ADRGA---------------------------YLNMFSGHGSGLTC---GDFTTDGKTICTGSD-NATLSIWNPKGGENF  117 (216)
Q Consensus        69 ~~~~~---------------------------~~~~~~~~~~~v~~---~~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~  117 (216)
                      ++-..                           .+....++...|.+   +.+..|...||+++. |+.|+|||++.....
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence            86321                           01122334455555   556678889999887 999999999976554


Q ss_pred             EEeecccccccccceEEEeeeecCeEEEEe----------------------------------------------CCCC
Q 043942          118 HAIRRSSLEFSLNYWMICTSLYDGVTCLSW----------------------------------------------PGTS  151 (216)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------------------~~~~  151 (216)
                      ..........-+..    ....-.+.++..                                              +|++
T Consensus       254 ~r~ep~~~~~~~t~----skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~  329 (720)
T KOG0321|consen  254 YRQEPRGSDKYPTH----SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD  329 (720)
T ss_pred             cccCCCcccCccCc----ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC
Confidence            33332111100000    001122333333                                              4555


Q ss_pred             cEEEEecccCeE---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccccc
Q 043942          152 KYLVTGCVDGKV---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       152 ~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      .++++|+.|...               .+|...|+.++|.|.. .-+++|++|-.+++|++.++-
T Consensus       330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            555555554433               6788889999998854 347788999999999986643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.81  E-value=1.1e-17  Score=124.32  Aligned_cols=189  Identities=19%  Similarity=0.187  Sum_probs=124.0

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------cCcEEEEE---------E
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------EDSTVWMW---------N   68 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------~~~~v~i~---------d   68 (216)
                      +..++..+|.+.|.+++.-.+|.+| +|+.|+.|..|| ..-+.++..+.++..-       ..+.+.+=         .
T Consensus       278 ~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt  355 (626)
T KOG2106|consen  278 RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT  355 (626)
T ss_pred             eEEeEeeecCCceEEEEEecCccEe-ecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence            4455566999999999999999755 499999999999 4444444444333211       11111111         1


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeE--Eeec--ccccccccce------------
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFH--AIRR--SSLEFSLNYW------------  132 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~--~~~~--~~~~~~~~~~------------  132 (216)
                      ++++. .....+|......++.+|+.++++|++.|+.+++|+  ..+...  .+..  ....+.+...            
T Consensus       356 ~~~~f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V  432 (626)
T KOG2106|consen  356 LENGF-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFV  432 (626)
T ss_pred             ecCCc-eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEE
Confidence            12111 123345777777777777777777777777777777  233221  1111  1111111110            


Q ss_pred             --------EEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942          133 --------MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVD  188 (216)
Q Consensus       133 --------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d  188 (216)
                              ........++++++|+|+|.+||.|+.|+.+                ..+.++|+.+.|++|+++|.+-+.|
T Consensus       433 ~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  433 LDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             EecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCc
Confidence                    0011146789999999999999999999988                4556899999999999999999999


Q ss_pred             CcEEEEEccc
Q 043942          189 GTARVFEIAE  198 (216)
Q Consensus       189 ~~v~vw~~~~  198 (216)
                      -.|..|....
T Consensus       513 ~eiLyW~~~~  522 (626)
T KOG2106|consen  513 YEILYWKPSE  522 (626)
T ss_pred             eEEEEEcccc
Confidence            9999995443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.2e-18  Score=127.86  Aligned_cols=179  Identities=17%  Similarity=0.234  Sum_probs=140.1

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC---------CceEEEEeCCCCcc------------
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS---------RNLQCTVEGPRGGI------------   59 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~---------~~~~~~~~~~~~~~------------   59 (216)
                      |.+|+++..+.+|=..|+|+.|+-||.+|+|||.||.|.+|++.+         .++...+..|.-++            
T Consensus       110 lssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~  189 (476)
T KOG0646|consen  110 LSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNA  189 (476)
T ss_pred             eccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccc
Confidence            468999999999999999999999999999999999999998642         24555666665544            


Q ss_pred             ------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEE-eecccccccccce
Q 043942           60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA-IRRSSLEFSLNYW  132 (216)
Q Consensus        60 ------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~  132 (216)
                            .|.++++||+..+..+.++. ....+.+++.+|.++.+..|+.+|.|.+.++..-..... .............
T Consensus       190 rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~  268 (476)
T KOG0646|consen  190 RLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQI  268 (476)
T ss_pred             eEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccccee
Confidence                  89999999999999988887 557799999999999999999999999988875331110 1111111222334


Q ss_pred             EEEeeeec--CeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCC
Q 043942          133 MICTSLYD--GVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRE  180 (216)
Q Consensus       133 ~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~  180 (216)
                      ....+|..  .|+|++++-||..|++|+.||.+              ....++|+.+.+.|-.+
T Consensus       269 ~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  269 NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            44555776  99999999999999999999998              22567888888876543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=2.8e-18  Score=128.69  Aligned_cols=188  Identities=15%  Similarity=0.216  Sum_probs=140.8

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG   84 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~   84 (216)
                      +++.++++|.++|.|++..++++.+.+|+.||+|+.|++....-..              -.+|..  .....+.||.+.
T Consensus       335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~--------------ds~dp~--vl~~~l~Ghtda  398 (577)
T KOG0642|consen  335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD--------------DSYDPS--VLSGTLLGHTDA  398 (577)
T ss_pred             eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc--------------cccCcc--hhccceeccccc
Confidence            6788999999999999999999999999999999999876321100              011111  223567899999


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc-----cccccc-------------------------ceEE
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS-----LEFSLN-------------------------YWMI  134 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~-------------------------~~~~  134 (216)
                      |+.+++++....|++++.||+++.|+...... .++....     ...+..                         ...+
T Consensus       399 vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~  477 (577)
T KOG0642|consen  399 VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLI  477 (577)
T ss_pred             eeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheee
Confidence            99999999999999999999999999876554 2222210     000000                         0000


Q ss_pred             Ee-------eeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942          135 CT-------SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARV  193 (216)
Q Consensus       135 ~~-------~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~v  193 (216)
                      ..       .....+..+.++|...+.+++..|+.+              ..|...++++++.|+|-+|++++.|+.+++
T Consensus       478 ~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l  557 (577)
T KOG0642|consen  478 FESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL  557 (577)
T ss_pred             ccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence            00       022457788899999999999999888              788889999999999999999999999999


Q ss_pred             EEcccccceeecCCcc
Q 043942          194 FEIAEFRRATKAPSYS  209 (216)
Q Consensus       194 w~~~~~~~~~~~~~~~  209 (216)
                      |.+....+......+.
T Consensus       558 ~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  558 WKLDVKTCVLESTAHR  573 (577)
T ss_pred             hhccchheeecccccc
Confidence            9998777766554443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.81  E-value=3e-17  Score=121.17  Aligned_cols=161  Identities=11%  Similarity=0.070  Sum_probs=122.4

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeeeccCCCeeEEE
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGD   89 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~   89 (216)
                      ++.+++++.|+.+++||+.+++....+..+....                .++.|++||..+++.+..+..+.. +..++
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~   79 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA   79 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence            3578899999999999999998888776543211                578999999999888777765443 57889


Q ss_pred             EcCCCcEEEEe-cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----
Q 043942           90 FTTDGKTICTG-SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----  163 (216)
Q Consensus        90 ~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----  163 (216)
                      |+|+++.++++ +.++.+++||+++++.+..+.                ....+..++|+|++.+++++..++..     
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d  143 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIP----------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFID  143 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee----------------CCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence            99999877654 568999999999877666654                23346789999999999988776532     


Q ss_pred             ---------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEccccccee
Q 043942          164 ---------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       164 ---------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~~~~~  203 (216)
                               ......+..++|+|++++|+++ ..++.|++||+++++...
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~  193 (300)
T TIGR03866       144 TKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK  193 (300)
T ss_pred             CCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee
Confidence                     1112345678999999988644 468999999999876543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.81  E-value=9.6e-20  Score=142.25  Aligned_cols=193  Identities=22%  Similarity=0.354  Sum_probs=138.9

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN   68 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d   68 (216)
                      +.++.|.+|...|+|+.|...|.++++|+.|..|+||.+++..++..+.+|...+                .|..|++|.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            3456678999999999999999999999999999999999999999999998876                788899999


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccce-----------EEEe-
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYW-----------MICT-  136 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-  136 (216)
                      ++.+.++..+++|++.|++++|+|..    +.+.||++++||.+ .... .+...+..+.....           .... 
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~-~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg  334 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPR-IYVPRPLKFTEKDLVDSILFENNGDRFLTG  334 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-cccc-ccCCCCCCcccccceeeeeccccccccccc
Confidence            99999999999999999999999965    67899999999988 1111 11111111100000           0000 


Q ss_pred             -----eeecCeEEEEeCCCCcEEEEecccCe-------------------------EEeeeCCEEEEEEecCCC-eEEEE
Q 043942          137 -----SLYDGVTCLSWPGTSKYLVTGCVDGK-------------------------VDGHIDAIQSLSVSAIRE-SLVSV  185 (216)
Q Consensus       137 -----~~~~~v~~~~~~~~~~~l~~~~~~~~-------------------------i~~~~~~i~~~~~~~~~~-~l~s~  185 (216)
                           .......+++|....-.+++.+.|-.                         ..+|...+..+.++|-.. ...++
T Consensus       335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence                 01111223333333333333332211                         167888999999999665 44588


Q ss_pred             eCCCcEEEEEccccccee
Q 043942          186 SVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       186 ~~d~~v~vw~~~~~~~~~  203 (216)
                      +.||...|||+..+.++.
T Consensus       415 g~dgst~iwdi~eg~pik  432 (1113)
T KOG0644|consen  415 GYDGSTIIWDIWEGIPIK  432 (1113)
T ss_pred             cCCCceEeeecccCCcce
Confidence            999999999998876554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.80  E-value=2.5e-17  Score=122.48  Aligned_cols=143  Identities=17%  Similarity=0.279  Sum_probs=106.8

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------cCcEEEEEECCCcce
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------EDSTVWMWNADRGAY   74 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------~~~~v~i~d~~~~~~   74 (216)
                      ..+..+|.+..+.++.+|+.+.++|++.|+.+++|+-...+..+.+..+..+.            ..|...+.|.++...
T Consensus       361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l  440 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDL  440 (626)
T ss_pred             eEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEeccccee
Confidence            44566899999999999999999999999999999932222223333222221            677788899998655


Q ss_pred             eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      +..-. .+.++++++|+|+|.+||.|+.|+.|++|.+............           +  +..+|+.+.|++|++++
T Consensus       441 v~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k-----------~--~gs~ithLDwS~Ds~~~  506 (626)
T KOG2106|consen  441 VTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK-----------C--SGSPITHLDWSSDSQFL  506 (626)
T ss_pred             EEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee-----------e--cCceeEEeeecCCCceE
Confidence            55444 4889999999999999999999999999999865443322211           1  34788899999999888


Q ss_pred             EEecccCeE
Q 043942          155 VTGCVDGKV  163 (216)
Q Consensus       155 ~~~~~~~~i  163 (216)
                      .+-+.|-.+
T Consensus       507 ~~~S~d~ei  515 (626)
T KOG2106|consen  507 VSNSGDYEI  515 (626)
T ss_pred             EeccCceEE
Confidence            877766555

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=5.1e-19  Score=125.37  Aligned_cols=113  Identities=19%  Similarity=0.287  Sum_probs=91.1

Q ss_pred             CCCceeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCceEEEEeC--CCCcc------------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGGI------------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~~------------------   59 (216)
                      .+|+.+..+++|...++.+.|..  ....+.+|+.||+|++||++.......+..  +.+..                  
T Consensus        58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE  137 (376)
T KOG1188|consen   58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE  137 (376)
T ss_pred             cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence            46778899999999999999987  357899999999999999998755444322  22111                  


Q ss_pred             ---cCcEEEEEECCCcce-eeee-eccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCC
Q 043942           60 ---EDSTVWMWNADRGAY-LNMF-SGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGG  114 (216)
Q Consensus        60 ---~~~~v~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~  114 (216)
                         .+-.|.+||++..+. +..+ ..|...|+++.|+| +.+.|++|+.||.|.+||+...
T Consensus       138 ~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  138 LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence               788899999997765 5443 57999999999999 5679999999999999999854

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=1.8e-18  Score=129.41  Aligned_cols=175  Identities=17%  Similarity=0.208  Sum_probs=137.3

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC---------ceEEEEe-CCC-Ccc---cCcEEEEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR---------NLQCTVE-GPR-GGI---EDSTVWMWN   68 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---------~~~~~~~-~~~-~~~---~~~~v~i~d   68 (216)
                      .|+..+.+.+|.+.|.+-.|+|||.-|+|++.||.|++|.-..+         +.+.... .+. ..+   ..+.+.+-.
T Consensus        93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKp  172 (737)
T KOG1524|consen   93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKP  172 (737)
T ss_pred             cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEee
Confidence            45566677899999999999999999999999999999986532         2222221 111 111   566666666


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      +.....+..+++|.+-|.++.|+|..+.+++|+.|-..++||-. |..+..-..               |..+|++++|+
T Consensus       173 L~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~---------------~ey~ITSva~n  236 (737)
T KOG1524|consen  173 LAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA---------------EEYAITSVAFN  236 (737)
T ss_pred             cccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh---------------hccceeeeeec
Confidence            76666777889999999999999999999999999999999976 665555444               88999999999


Q ss_pred             CCCcEEEEecccCeE--EeeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          149 GTSKYLVTGCVDGKV--DGHIDAIQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       149 ~~~~~l~~~~~~~~i--~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                      |+ ..++.++.+-.-  ....+.|..++||+||..++.|...|.+.+=
T Consensus       237 pd-~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  237 PE-KDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             cc-cceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            99 667777665433  5566889999999999999988888877553

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=5.6e-17  Score=124.10  Aligned_cols=183  Identities=16%  Similarity=0.165  Sum_probs=146.9

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeCCCCcc----------------cCcEEEEEECCCccee
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEGPRGGI----------------EDSTVWMWNADRGAYL   75 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~   75 (216)
                      -..+|.+++++.+.+.||.+-.+|+|.+|++...- ....+.++....                .+|.|.-||+.++++.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence            45789999999999999999999999999998753 334555554433                7899999999999999


Q ss_pred             eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                      ..+....+.|++++.+|.+..++.|++||.+..++...++.........             ..+.+.++.|+|++..++
T Consensus       104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r-------------q~sRvLslsw~~~~~~i~  170 (691)
T KOG2048|consen  104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR-------------QKSRVLSLSWNPTGTKIA  170 (691)
T ss_pred             EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc-------------ccceEEEEEecCCccEEE
Confidence            9999889999999999999999999999988888888776554332211             568899999999999999


Q ss_pred             EecccCeE---------Eee-------------eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          156 TGCVDGKV---------DGH-------------IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       156 ~~~~~~~i---------~~~-------------~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      .|+.||.|         ..|             ..-|+++.|-.++ .|++|..-|+|.+||...+........+.
T Consensus       171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~  245 (691)
T KOG2048|consen  171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHD  245 (691)
T ss_pred             ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhh
Confidence            99999977         112             2236666666554 58889889999999998887766554443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.80  E-value=4.6e-19  Score=121.74  Aligned_cols=176  Identities=18%  Similarity=0.201  Sum_probs=140.3

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC-CCCcc------------------------
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-PRGGI------------------------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~~------------------------   59 (216)
                      .+...|++|.+.|+++.|..+++ |.+|...|.|++|++.+......++. +...+                        
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWT   83 (323)
T ss_pred             CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEE
Confidence            45667889999999999998764 99999999999999987654443331 11100                        


Q ss_pred             --------------------------------------------------------------------------------
Q 043942           60 --------------------------------------------------------------------------------   59 (216)
Q Consensus        60 --------------------------------------------------------------------------------   59 (216)
                                                                                                      
T Consensus        84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence                                                                                            


Q ss_pred             ---------cCcEEEEEECCCccee----------eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee---
Q 043942           60 ---------EDSTVWMWNADRGAYL----------NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF---  117 (216)
Q Consensus        60 ---------~~~~v~i~d~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~---  117 (216)
                               ++|.+.+||+.++..+          .....|..+|.++.|.+.-..=++|+.+..+..|.+......   
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence                     8999999999987433          334468899999999987777788888889999988743211   


Q ss_pred             -EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeE
Q 043942          118 -HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESL  182 (216)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l  182 (216)
                       .+...               ....+..+.+.||++.+++++.|+.+              .-|...|.+++|+|+...+
T Consensus       244 ~~e~~l---------------knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  244 RKEITL---------------KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             cceEEe---------------cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence             12221               45678889999999999999999998              6788999999999999999


Q ss_pred             EEEeCCCcEEEEEc
Q 043942          183 VSVSVDGTARVFEI  196 (216)
Q Consensus       183 ~s~~~d~~v~vw~~  196 (216)
                      |+++.|+.|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=117.42  Aligned_cols=185  Identities=15%  Similarity=0.116  Sum_probs=135.3

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------cCcEEEEEECCCcce---
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------EDSTVWMWNADRGAY---   74 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------~~~~v~i~d~~~~~~---   74 (216)
                      .+.+.+.+|..+|.+++||+||+.|+|+|.|..|.+||+..|.+++.+.....-.       ..+.+.+--++....   
T Consensus        56 ~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~  135 (405)
T KOG1273|consen   56 RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVID  135 (405)
T ss_pred             chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEE
Confidence            4456778999999999999999999999999999999999999988887655422       222222222221111   


Q ss_pred             ----eeeeec--cC----CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942           75 ----LNMFSG--HG----SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        75 ----~~~~~~--~~----~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                          ++++..  ..    ..-.+..|.+.|+++++|...|.+.++|..+.+.+..++..              ....|.+
T Consensus       136 ~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit--------------s~~~IK~  201 (405)
T KOG1273|consen  136 FSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT--------------SVQAIKQ  201 (405)
T ss_pred             ecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec--------------hheeeeE
Confidence                111111  11    11223458889999999999999999999999988888751              2367899


Q ss_pred             EEeCCCCcEEEEecccCeE----------Eee---------------eCCEEEEEEecCCCeEEEEeC-CCcEEEEEccc
Q 043942          145 LSWPGTSKYLVTGCVDGKV----------DGH---------------IDAIQSLSVSAIRESLVSVSV-DGTARVFEIAE  198 (216)
Q Consensus       145 ~~~~~~~~~l~~~~~~~~i----------~~~---------------~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~  198 (216)
                      +.++..|++|+.-+.|+.|          .+.               .-.-.+++|+.+|.|+++++. ...++||.-..
T Consensus       202 I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~  281 (405)
T KOG1273|consen  202 IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI  281 (405)
T ss_pred             EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence            9999999999999999988          111               112357899999999988775 46899999877


Q ss_pred             cccee
Q 043942          199 FRRAT  203 (216)
Q Consensus       199 ~~~~~  203 (216)
                      +..+.
T Consensus       282 GsLVK  286 (405)
T KOG1273|consen  282 GSLVK  286 (405)
T ss_pred             cceee
Confidence            66544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=3.6e-18  Score=124.72  Aligned_cols=177  Identities=15%  Similarity=0.196  Sum_probs=138.8

Q ss_pred             eccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc
Q 043942           11 LGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG   72 (216)
Q Consensus        11 ~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~   72 (216)
                      .+|++.|.+++|+.. .+.||+||.|.+|++||+.++++..++..|...+                 .|++|.+.|.+..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            479999999999985 4789999999999999999999888887666554                 8999999999843


Q ss_pred             cee-eeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           73 AYL-NMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        73 ~~~-~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ... ..++ ..+.|-.++|.|.. ..++++..||+++-+|+|+. +++.++..               |.++|.++++++
T Consensus       320 ~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A---------------Hd~~ISgl~~n~  383 (463)
T KOG0270|consen  320 SNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA---------------HDDEISGLSVNI  383 (463)
T ss_pred             cccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe---------------ccCCcceEEecC
Confidence            222 2233 45779999999954 56777889999999999975 77888887               999999999987


Q ss_pred             C-CcEEEEecccCeE-------------Eeee---CCEEEEEEecCCC-eEEEEeCCCcEEEEEccccccee
Q 043942          150 T-SKYLVTGCVDGKV-------------DGHI---DAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       150 ~-~~~l~~~~~~~~i-------------~~~~---~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      . ..++++++.++.+             ..|.   +...++++.|+-. +++.|+..+.++|||+.+.....
T Consensus       384 ~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  384 QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             CCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            5 4578889999988             1121   2355667777665 45667777889999998876554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=3.5e-17  Score=114.66  Aligned_cols=170  Identities=22%  Similarity=0.339  Sum_probs=123.5

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCccee
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYL   75 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~   75 (216)
                      .|..++.+++|.++ ..+++|+.||.|+.+|+++++....- .|..++                +|++|++||.+.....
T Consensus        52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig-th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~  129 (323)
T KOG1036|consen   52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG-THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV  129 (323)
T ss_pred             ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec-cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence            38899999999985 57999999999999999987543321 222221                8999999999986666


Q ss_pred             eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEE---------------------
Q 043942           76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI---------------------  134 (216)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~---------------------  134 (216)
                      ..+. ....|.++...  ++.|++|+.|..+.+||+++.....+....++..+.+....                     
T Consensus       130 ~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~  206 (323)
T KOG1036|consen  130 GTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYF  206 (323)
T ss_pred             cccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEcc
Confidence            6655 34478888765  77999999999999999997654332222222111111100                     


Q ss_pred             ------------Eee---------eecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCC
Q 043942          135 ------------CTS---------LYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIR  179 (216)
Q Consensus       135 ------------~~~---------~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~  179 (216)
                                  +.-         .--+|++++|+|-...|++|+.||.+              ......|..++|+.+|
T Consensus       207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG  286 (323)
T KOG1036|consen  207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG  286 (323)
T ss_pred             CCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC
Confidence                        000         23468999999999999999999998              2334679999999999


Q ss_pred             CeEEEEe
Q 043942          180 ESLVSVS  186 (216)
Q Consensus       180 ~~l~s~~  186 (216)
                      ..||.++
T Consensus       287 ~~LAia~  293 (323)
T KOG1036|consen  287 SLLAIAS  293 (323)
T ss_pred             CeEEEEe
Confidence            9999876

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.78  E-value=1.4e-17  Score=117.66  Aligned_cols=139  Identities=14%  Similarity=0.211  Sum_probs=110.7

Q ss_pred             ccccceEEEEEcc-----CCCEEEEEcCCCcEEEEECCCCc---eEEEEeCCCCcc----------------------cC
Q 043942           12 GHKDSFSSLAFST-----DGQLLASGGFHGLVQNRDTSSRN---LQCTVEGPRGGI----------------------ED   61 (216)
Q Consensus        12 ~h~~~v~~~~~s~-----~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~----------------------~~   61 (216)
                      .|..+|..++|++     .-+.+|+++. ..+.+|.....-   .++.+.......                      .-
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~  114 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL  114 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence            6788999999985     1246777764 467777765432   222222211110                      67


Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      |.|+|.|+.+++....+.+|...|+.+.++|+ .+++++++.|..|++|++++..++..+.+.            .+|.+
T Consensus       115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~------------egHrd  182 (385)
T KOG1034|consen  115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV------------EGHRD  182 (385)
T ss_pred             eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc------------ccccC
Confidence            88999999999999999999999999999995 478899999999999999999999888752            24999


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      .|.++.|+++|.+|++++.|..+
T Consensus       183 eVLSvD~~~~gd~i~ScGmDhsl  205 (385)
T KOG1034|consen  183 EVLSVDFSLDGDRIASCGMDHSL  205 (385)
T ss_pred             cEEEEEEcCCCCeeeccCCcceE
Confidence            99999999999999999999988

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1e-18  Score=140.26  Aligned_cols=181  Identities=14%  Similarity=0.225  Sum_probs=141.2

Q ss_pred             ceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCC--CCcc-----------------cCcEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGP--RGGI-----------------EDSTV   64 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~~-----------------~~~~v   64 (216)
                      +.+.+...|.+.|..+.|++.+ ++||+|+.||.|.|||++..+.-......  ...+                 .++.+
T Consensus       107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~  186 (1049)
T KOG0307|consen  107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRA  186 (1049)
T ss_pred             HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence            3456777899999999999965 59999999999999999875443333211  1111                 78899


Q ss_pred             EEEECCCcceeeeeeccCC--CeeEEEEcCCC-cEEEEecCCC---eEEEEeCCCCc-eeEEeecccccccccceEEEee
Q 043942           65 WMWNADRGAYLNMFSGHGS--GLTCGDFTTDG-KTICTGSDNA---TLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~t~~~d~---~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      .|||++..+++..+..+.+  .+..++|+|+. ..+++++.|.   .|.+||+|.-. .++.+..               
T Consensus       187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~---------------  251 (1049)
T KOG0307|consen  187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG---------------  251 (1049)
T ss_pred             eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc---------------
Confidence            9999999888887776654  47799999975 4677776554   49999998643 4556655               


Q ss_pred             eecCeEEEEeCCCC-cEEEEecccCeE--------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEccccc
Q 043942          138 LYDGVTCLSWPGTS-KYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       138 ~~~~v~~~~~~~~~-~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~  200 (216)
                      |...|.++.|++.+ .++++++.|+.+              .....++..+.|+|..- .++.++.||.|-|+.+....
T Consensus       252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            99999999999866 889999999988              22346799999999775 77788899999999987644

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.78  E-value=2e-17  Score=116.53  Aligned_cols=150  Identities=19%  Similarity=0.246  Sum_probs=124.8

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEE
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCG   88 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~   88 (216)
                      .+.--..+|+|.+|++|+..+|.+-....|.||.....+.                       .++.+++..|...|+.+
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------------------w~~~htls~Hd~~vtgv   61 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------------------WEPAHTLSEHDKIVTGV   61 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------ceeceehhhhCcceeEE
Confidence            4444567999999999999999999777777776554331                       34567888899999999


Q ss_pred             EEcCCCcEEEEecCCCeEEEEeC-CCCceeE--EeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942           89 DFTTDGKTICTGSDNATLSIWNP-KGGENFH--AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--  163 (216)
Q Consensus        89 ~~~~~~~~l~t~~~d~~i~~wd~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--  163 (216)
                      +|+|..+.|++++.|+.-++|.. ..++-..  .+..               ++...+++.|+|.++.|++|+.-..+  
T Consensus        62 dWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlR---------------iNrAAt~V~WsP~enkFAVgSgar~isV  126 (361)
T KOG1523|consen   62 DWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLR---------------INRAATCVKWSPKENKFAVGSGARLISV  126 (361)
T ss_pred             eecCCCCceeEccCCCCccccccCCCCeeccceeEEE---------------eccceeeEeecCcCceEEeccCccEEEE
Confidence            99999999999999999999998 4443333  2322               78899999999999999999998887  


Q ss_pred             ----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          164 ----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       164 ----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                                      ..+.+.|++++|+|++-+|++|+.|+..||+..
T Consensus       127 cy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  127 CYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             EEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence                            456778999999999999999999999999975

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.77  E-value=1.3e-17  Score=127.93  Aligned_cols=159  Identities=21%  Similarity=0.283  Sum_probs=128.4

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCee
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLT   86 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~   86 (216)
                      +..|-||...|++++.+|+|+++||++.....                     ....|++|+..+...+..+.+|.-.|+
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~---------------------ehAvI~lw~t~~W~~~~~L~~HsLTVT  576 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLK---------------------EHAVIRLWNTANWLQVQELEGHSLTVT  576 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCc---------------------cceEEEEEeccchhhhheecccceEEE
Confidence            44567999999999999999999999876543                     566788898888888888999999999


Q ss_pred             EEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---
Q 043942           87 CGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---  163 (216)
Q Consensus        87 ~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---  163 (216)
                      .++|+||+++|++.++|+++.+|....... ..+....          ...|..-|.+..|+|++.++++++.|..+   
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-~e~~fa~----------~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-DEFRFAC----------LKAHTRIIWDCSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeecccc-hhhhhcc----------ccccceEEEEcccCcccceeEEecCCceEEEE
Confidence            999999999999999999999999854322 1111000          11288889999999999999999999998   


Q ss_pred             ---------------EeeeCCEEEEEEecC-----CCeEEEEeCCCcEEEEEcc
Q 043942          164 ---------------DGHIDAIQSLSVSAI-----RESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       164 ---------------~~~~~~i~~~~~~~~-----~~~l~s~~~d~~v~vw~~~  197 (216)
                                     ..+..+|+.+++.|-     +..++.|-+.|.|.+|...
T Consensus       646 ~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  646 EEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             eccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence                           356678999999872     2256667778999999965

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.76  E-value=1.1e-17  Score=124.26  Aligned_cols=173  Identities=11%  Similarity=0.191  Sum_probs=139.8

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeee
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFS   79 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~   79 (216)
                      .-.|++......|+++|+..+.|+|||++...+.+.+..|...+                ..|.|.+..+.++.....+.
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~  160 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT  160 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence            34566666666899999999999999999877777777777655                67888888888888777777


Q ss_pred             ccCC-CeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEE
Q 043942           80 GHGS-GLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVT  156 (216)
Q Consensus        80 ~~~~-~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  156 (216)
                      ...+ .|.-+.|+|..+ +|.+++.+|.|.+||+....+...+..              .|..+...++|+|.. .+|++
T Consensus       161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~--------------~HsAP~~gicfspsne~l~vs  226 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE--------------AHSAPCRGICFSPSNEALLVS  226 (673)
T ss_pred             cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh--------------hccCCcCcceecCCccceEEE
Confidence            4434 455899999765 456789999999999997777665543              188999999999955 56788


Q ss_pred             ecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          157 GCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       157 ~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      .+.|..|             .....+.+.++|.++|.+|++|...|.|..||++..+..
T Consensus       227 VG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  227 VGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             ecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence            8999888             455678999999999999999999999999999975543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.4e-18  Score=138.18  Aligned_cols=181  Identities=18%  Similarity=0.272  Sum_probs=140.0

Q ss_pred             ccceEEEEEccCCCE----EEEEcCCCcEEEEECCCC------ceEEEEeCCCCcc-----------------cCcEEEE
Q 043942           14 KDSFSSLAFSTDGQL----LASGGFHGLVQNRDTSSR------NLQCTVEGPRGGI-----------------EDSTVWM   66 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~----l~s~~~d~~v~vwd~~~~------~~~~~~~~~~~~~-----------------~~~~v~i   66 (216)
                      ....+.++|.+.|..    ||.|..||.|.+||...-      ..+.+...|.+.+                 .+|.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            456889999997754    888999999999998652      3344445555544                 8999999


Q ss_pred             EECCCcceeeee--eccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           67 WNADRGAYLNMF--SGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        67 ~d~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      ||++..+.-...  ....+.|.+++|+. ....|++++.+|++.+||++..+.+-.+....             ....+.
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-------------~~~~~S  210 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-------------GRMHCS  210 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-------------Ccccee
Confidence            999864433333  22456899999987 45678899999999999999887776665411             224577


Q ss_pred             EEEeCCCCc-EEEEecccCeE------------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccccccee
Q 043942          144 CLSWPGTSK-YLVTGCVDGKV------------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       144 ~~~~~~~~~-~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      .+.|+|+.. .++++++|...                  .+|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+.
T Consensus       211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~  290 (1049)
T KOG0307|consen  211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG  290 (1049)
T ss_pred             eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence            899999764 56666665543                  6899999999999976 899999999999999999999888


Q ss_pred             ecCC
Q 043942          204 KAPS  207 (216)
Q Consensus       204 ~~~~  207 (216)
                      ++|.
T Consensus       291 ~~p~  294 (1049)
T KOG0307|consen  291 ELPA  294 (1049)
T ss_pred             ecCC
Confidence            8876

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.76  E-value=4.8e-17  Score=119.44  Aligned_cols=178  Identities=16%  Similarity=0.218  Sum_probs=139.5

Q ss_pred             ceeEEeeccccceEEEEEccCC--CEEEEEcCCCcEEEEECCCC----ceEEEEeCCCCcc-----------------cC
Q 043942            5 DWASEILGHKDSFSSLAFSTDG--QLLASGGFHGLVQNRDTSSR----NLQCTVEGPRGGI-----------------ED   61 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~~-----------------~~   61 (216)
                      ......+-+.++|++++|+|..  +++|+|+.-|.|-+||+.+.    ..+..+..|..++                 .|
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            3445667789999999999954  58899999999999999522    2233344444433                 89


Q ss_pred             cEEEEEECCCcceeeeee--ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeee
Q 043942           62 STVWMWNADRGAYLNMFS--GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      |+|++-|++++.....+.  .....+.++.|+.+...++.+..=|...+||++++.. ...+..               |
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l---------------h  321 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL---------------H  321 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh---------------h
Confidence            999999998764433333  3455678889988888888888878999999998765 444444               7


Q ss_pred             ecCeEEEEeCCCC-cEEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          139 YDGVTCLSWPGTS-KYLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       139 ~~~v~~~~~~~~~-~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      ...|+.++++|.. .++++++.|+..                  ..|...|.++.|||.+-.|++.+.|..|+|||..
T Consensus       322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            7799999999955 578899999887                  4688899999999998789999999999999984

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.76  E-value=1.6e-17  Score=124.26  Aligned_cols=174  Identities=18%  Similarity=0.262  Sum_probs=125.6

Q ss_pred             ccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcccCcEEEEEECC-CcceeeeeeccCCCeeEEE
Q 043942           14 KDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGIEDSTVWMWNAD-RGAYLNMFSGHGSGLTCGD   89 (216)
Q Consensus        14 ~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~~v~~~~   89 (216)
                      +..|+|+.|-|. ...|+.+-.+|.+++||....-  .-..+..+..+ ..-.|..|--. +..++..+.--.+.|...+
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~-~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG-DQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC-CeeEEeeeeccccCCccceeEecccccccee
Confidence            368999999994 4567777789999999873210  00011111100 11112222221 2245555544556899999


Q ss_pred             EcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE------
Q 043942           90 FTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------  163 (216)
Q Consensus        90 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------  163 (216)
                      |+|||++||+.+.||.++|||..+.+.+..++.               -.+...|++|+|||++|++|++|..+      
T Consensus       298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS---------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             EcCCCceEEEEecCceEEEeeccHHHHHHHHHh---------------hccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence            999999999999999999999998887776665               66889999999999999999999987      


Q ss_pred             --------EeeeCCEEEEEEecC-----------------------------------C-------------CeEEEEeC
Q 043942          164 --------DGHIDAIQSLSVSAI-----------------------------------R-------------ESLVSVSV  187 (216)
Q Consensus       164 --------~~~~~~i~~~~~~~~-----------------------------------~-------------~~l~s~~~  187 (216)
                              ++|..+|..++|+|.                                   +             -.|.+.+.
T Consensus       363 erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGq  442 (636)
T KOG2394|consen  363 ERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQ  442 (636)
T ss_pred             cceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccc
Confidence                    799999999999830                                   1             13567889


Q ss_pred             CCcEEEEEccccccee
Q 043942          188 DGTARVFEIAEFRRAT  203 (216)
Q Consensus       188 d~~v~vw~~~~~~~~~  203 (216)
                      |-.+.+||+.......
T Consensus       443 DTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  443 DTQLCLWDLTEDVLVP  458 (636)
T ss_pred             cceEEEEecchhhccc
Confidence            9999999998755443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=6.4e-17  Score=114.87  Aligned_cols=168  Identities=20%  Similarity=0.331  Sum_probs=133.9

Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEEECCCcceeee--eeccC-CCe
Q 043942           27 QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMWNADRGAYLNM--FSGHG-SGL   85 (216)
Q Consensus        27 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~d~~~~~~~~~--~~~~~-~~v   85 (216)
                      ..+|++-..|.|++||..+++.+..+.++....                  .||+|++||++.......  +..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            458888889999999999999988888766543                  899999999997655433  44454 466


Q ss_pred             eEEEEcCCCcEEEEec----CCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecc
Q 043942           86 TCGDFTTDGKTICTGS----DNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCV  159 (216)
Q Consensus        86 ~~~~~~~~~~~l~t~~----~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  159 (216)
                      .+++.+-+++.+++|.    .+..+.+||++..++ +..+..              .|.+.|++++|+| +.+.|++|+.
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--------------SH~DDVT~lrFHP~~pnlLlSGSv  186 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--------------SHNDDVTQLRFHPSDPNLLLSGSV  186 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh--------------hccCcceeEEecCCCCCeEEeecc
Confidence            7888777788888886    577899999998776 444432              2999999999999 5679999999


Q ss_pred             cCeE-----------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942          160 DGKV-----------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFRRATKAPSY  208 (216)
Q Consensus       160 ~~~i-----------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~~~~~~~~~  208 (216)
                      ||.+                 ..|...|..+.|..++ +.|.+-+......+|+++.+.....++.+
T Consensus       187 DGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~  253 (376)
T KOG1188|consen  187 DGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP  253 (376)
T ss_pred             cceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc
Confidence            9998                 5667789999999887 45778888999999999998866655443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.7e-17  Score=120.47  Aligned_cols=155  Identities=25%  Similarity=0.354  Sum_probs=119.9

Q ss_pred             EEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942           18 SSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI   97 (216)
Q Consensus        18 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   97 (216)
                      .+++|+.+|..+++++.||++|||+..+.+                          .+.....|...|.+++|+|||++|
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--------------------------t~l~e~~~~~eV~DL~FS~dgk~l  201 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--------------------------TILEEIAHHAEVKDLDFSPDGKFL  201 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcch--------------------------hhhhhHhhcCccccceeCCCCcEE
Confidence            689999999999999988888888755433                          333445688899999999999999


Q ss_pred             EEecCCCeEEEEeCCCCceeEEeeccccc-------c--cc--cceEEEe----------------------------ee
Q 043942           98 CTGSDNATLSIWNPKGGENFHAIRRSSLE-------F--SL--NYWMICT----------------------------SL  138 (216)
Q Consensus        98 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~-------~--~~--~~~~~~~----------------------------~~  138 (216)
                      ++-+.| ..+||+.+++..+.........       +  +.  ..+.+..                            ..
T Consensus       202 asig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~  280 (398)
T KOG0771|consen  202 ASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR  280 (398)
T ss_pred             EEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence            999999 8999999998555444311000       0  00  0000000                            01


Q ss_pred             ecCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      ...|.+++.+++|++++.|+.+|.+               +.|...|+.+.|+|+.+++++.+.|....|..+.-.
T Consensus       281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            3478999999999999999999988               789999999999999999999999999999888753

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=2.8e-17  Score=114.54  Aligned_cols=174  Identities=14%  Similarity=0.278  Sum_probs=129.3

Q ss_pred             ccccceEEEEEccCC-----CEEEEEcCCCcEEEEECCCC--ceE--EEEeCCCC-----cc-----------------c
Q 043942           12 GHKDSFSSLAFSTDG-----QLLASGGFHGLVQNRDTSSR--NLQ--CTVEGPRG-----GI-----------------E   60 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~-----~~l~s~~~d~~v~vwd~~~~--~~~--~~~~~~~~-----~~-----------------~   60 (216)
                      .|..+++.+.|.|+.     ++|||++  ..+|+|.+...  +..  ..+..+..     ++                 -
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            588999999999976     3677765  37999998742  211  11111111     11                 6


Q ss_pred             CcEEEEEECCCcce---eeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942           61 DSTVWMWNADRGAY---LNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT  136 (216)
Q Consensus        61 ~~~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (216)
                      |-+..|||++++..   ...+-+|...|..++|...+ +.+|+.+.||.+++||++.......+...+.           
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-----------  240 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-----------  240 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-----------
Confidence            88999999998633   55677899999999999855 4789999999999999998766554443211           


Q ss_pred             eeecCeEEEEeCC-CCcEEEEecccCe-E---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccc
Q 043942          137 SLYDGVTCLSWPG-TSKYLVTGCVDGK-V---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       137 ~~~~~v~~~~~~~-~~~~l~~~~~~~~-i---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~  198 (216)
                       ...+...++|++ |.+++++-..|.. +               .+|...|..++|.|.. ..|++++.|..+.+||+..
T Consensus       241 -~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  241 -PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             -CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence             256788899987 4567776555443 1               8999999999999964 6899999999999999986


Q ss_pred             c
Q 043942          199 F  199 (216)
Q Consensus       199 ~  199 (216)
                      .
T Consensus       320 ~  320 (364)
T KOG0290|consen  320 M  320 (364)
T ss_pred             c
Confidence            4

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.76  E-value=5.4e-17  Score=120.62  Aligned_cols=158  Identities=11%  Similarity=0.194  Sum_probs=133.5

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMW   67 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~   67 (216)
                      +.+.+++|.+.|+++.++....|||+++..|.|.|..+.++.....+..+.+..                  .+|.|.+|
T Consensus       113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw  192 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW  192 (673)
T ss_pred             HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence            456788999999999999999999999999999999998876555554443322                  89999999


Q ss_pred             ECCCcceeee-eeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           68 NADRGAYLNM-FSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        68 d~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      |+....++.. ...|..+...++|+| +..+|++.+.|..|.+||.+..+....+.                -..+...+
T Consensus       193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----------------y~~Plstv  256 (673)
T KOG4378|consen  193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----------------YSHPLSTV  256 (673)
T ss_pred             eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----------------ecCCccee
Confidence            9997766654 467999999999999 55678899999999999999777766665                56788999


Q ss_pred             EeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCC
Q 043942          146 SWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIR  179 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~  179 (216)
                      +|.++|.+|+.|...|.+               ..|...|++++|-|.-
T Consensus       257 af~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  257 AFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            999999999999999988               6788899999998764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.75  E-value=2.9e-17  Score=126.91  Aligned_cols=201  Identities=15%  Similarity=0.176  Sum_probs=139.8

Q ss_pred             EeeccccceEEEEEccC-----------CCEEEEEcCCCcEEEEECCCCceEEEEeC--------------CC------C
Q 043942            9 EILGHKDSFSSLAFSTD-----------GQLLASGGFHGLVQNRDTSSRNLQCTVEG--------------PR------G   57 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~-----------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--------------~~------~   57 (216)
                      .+-.|..-|+++.--|.           ...|.||+.|++||+||+..+.--..+..              ..      .
T Consensus       364 s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~  443 (1080)
T KOG1408|consen  364 SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA  443 (1080)
T ss_pred             eeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence            34457777887776551           13699999999999999986321111100              00      0


Q ss_pred             --cc-------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC---CCcEEEEec
Q 043942           58 --GI-------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT---DGKTICTGS  101 (216)
Q Consensus        58 --~~-------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~t~~  101 (216)
                        ++                               ..|++++|++...+....+++|...|.|+.|+.   ..++||+++
T Consensus       444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas  523 (1080)
T KOG1408|consen  444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS  523 (1080)
T ss_pred             cCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc
Confidence              00                               788999999999888888999999999999985   357899999


Q ss_pred             CCCeEEEEeCCCCc-eeEEeeccc-----ccccccc---eEEEee--------------------------eecCeEEEE
Q 043942          102 DNATLSIWNPKGGE-NFHAIRRSS-----LEFSLNY---WMICTS--------------------------LYDGVTCLS  146 (216)
Q Consensus       102 ~d~~i~~wd~~~~~-~~~~~~~~~-----~~~~~~~---~~~~~~--------------------------~~~~v~~~~  146 (216)
                      .|+.|.+||+...- .++++...+     ..+....   .++..+                          ....++.++
T Consensus       524 rdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~  603 (1080)
T KOG1408|consen  524 RDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA  603 (1080)
T ss_pred             CCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence            99999999997543 333333310     0011000   001000                          223467778


Q ss_pred             eCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          147 WPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      ..|..+++++++.|..|                 ..|.+....+..+|.|.|+++...|+++.++|+.+++++..+..|+
T Consensus       604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs  683 (1080)
T KOG1408|consen  604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS  683 (1080)
T ss_pred             eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence            88888888888888777                 5666777888888888888888888889999988888887776665

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2e-15  Score=115.79  Aligned_cols=185  Identities=20%  Similarity=0.304  Sum_probs=142.4

Q ss_pred             EEeeccc-cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942            8 SEILGHK-DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus         8 ~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~   70 (216)
                      ..+.++. ..|.+++|++ +..|.+.+.+|.|.-||+.+++....++.....+                .||.++.++..
T Consensus        62 ~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~  140 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG  140 (691)
T ss_pred             EEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence            3455554 5799999995 5568888899999999999999888887666554                78877777777


Q ss_pred             Cccee--eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           71 RGAYL--NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        71 ~~~~~--~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      .+...  ..+...++.+.+++|+|++..+++|+.||.|++||..++..++.....-....       .....-|.++.|-
T Consensus       141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~-------k~~~~iVWSv~~L  213 (691)
T KOG2048|consen  141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLS-------KREPTIVWSVLFL  213 (691)
T ss_pred             CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccc-------cCCceEEEEEEEe
Confidence            66544  33445668999999999999999999999999999999988774432111000       0023345666666


Q ss_pred             CCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          149 GTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       149 ~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      .+ ..|++|..-|.+              ..|...|.+++..+++.++++++.|+.|.-+...+.+.
T Consensus       214 rd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  214 RD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             ec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            44 568899998988              67889999999999999999999999999888776543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.75  E-value=2.6e-17  Score=120.76  Aligned_cols=185  Identities=13%  Similarity=0.092  Sum_probs=137.8

Q ss_pred             eeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEE--EE----------eCCCCc--c----cCcEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQC--TV----------EGPRGG--I----EDSTVWM   66 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~--~~----------~~~~~~--~----~~~~v~i   66 (216)
                      -+..+..|..+|.++.|+|. -..+++.|+||+|+.-|++......  ..          +.....  +    .-|...+
T Consensus       226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~  305 (498)
T KOG4328|consen  226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNV  305 (498)
T ss_pred             ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEE
Confidence            35567789999999999994 4789999999999999998753211  11          111110  1    3447789


Q ss_pred             EECCCcce-eeeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEE--eecccccccccceEEEeeeecCe
Q 043942           67 WNADRGAY-LNMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHA--IRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        67 ~d~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      ||.+++.. ...++-|...|++++++|. ..+++|++.|++.++||++.-.....  +..             ..|...|
T Consensus       306 iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst-------------~~HrrsV  372 (498)
T KOG4328|consen  306 IDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST-------------LPHRRSV  372 (498)
T ss_pred             EEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec-------------cccccee
Confidence            99997654 5667778889999999995 45789999999999999996432221  110             1188999


Q ss_pred             EEEEeCCCCcEEEEecccCeE-----------------EeeeC------CEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV-----------------DGHID------AIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~------~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      .+..|+|.+..|++.+.|..|                 ..|..      ..-...|.|+..+++++-.-..|-|+|-..+
T Consensus       373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            999999988889999999887                 12211      2345689999999999999999999998777


Q ss_pred             ccee
Q 043942          200 RRAT  203 (216)
Q Consensus       200 ~~~~  203 (216)
                      +.+.
T Consensus       453 q~v~  456 (498)
T KOG4328|consen  453 QMVC  456 (498)
T ss_pred             EEee
Confidence            7443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.75  E-value=4.3e-17  Score=124.59  Aligned_cols=173  Identities=16%  Similarity=0.185  Sum_probs=126.1

Q ss_pred             ccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCC-------ceEEEEeCCCCcc-----------------cCcEEEEEE
Q 043942           14 KDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSR-------NLQCTVEGPRGGI-----------------EDSTVWMWN   68 (216)
Q Consensus        14 ~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~~-----------------~~~~v~i~d   68 (216)
                      ...|+++.|.| |.+.||.++.||.|++|.+..+       .....+..|...+                 .|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            35799999999 7789999999999999998754       2333444444433                 899999999


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      +++.+....+.+|.+.|..++|+|+|+.+++.+.||++++|+.+++.. +++-+..              ....--.+.|
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp--------------vgtRgARi~w  772 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP--------------VGTRGARILW  772 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC--------------ccCcceeEEE
Confidence            999998889999999999999999999999999999999999997653 3332221              1233345677


Q ss_pred             CCCCcEEEEecccCeE------------EeeeCCEEEEE---------EecCCC-eEEEEeCCCcEEEEEccccc
Q 043942          148 PGTSKYLVTGCVDGKV------------DGHIDAIQSLS---------VSAIRE-SLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i------------~~~~~~i~~~~---------~~~~~~-~l~s~~~d~~v~vw~~~~~~  200 (216)
                      .-+|+++++.+.|..-            ....-....+.         +++|.. ++++|-.|..|.+|.+-..+
T Consensus       773 acdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  773 ACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             EecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence            7788888877766543            10111122222         233444 56678889999999975433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.8e-16  Score=125.05  Aligned_cols=168  Identities=18%  Similarity=0.273  Sum_probs=138.2

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeee
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNM   77 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~   77 (216)
                      .-++.+++++-+|+++|.||.|-.|++-++.+....+.+++|..++                .||.|++||+.++....+
T Consensus        96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t  175 (933)
T KOG1274|consen   96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT  175 (933)
T ss_pred             eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence            4579999999999999999999999999999999999999988877                899999999998877666


Q ss_pred             eecc--------CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           78 FSGH--------GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        78 ~~~~--------~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      +.+-        ...+..++|+|++..++..+.|+.|++|+..+......+....             +...+..+.|+|
T Consensus       176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-------------~ss~~~~~~wsP  242 (933)
T KOG1274|consen  176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-------------SSSKFSDLQWSP  242 (933)
T ss_pred             cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-------------cccceEEEEEcC
Confidence            5431        3456789999999999999999999999999988877776532             334489999999


Q ss_pred             CCcEEEEecccCeE----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          150 TSKYLVTGCVDGKV----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       150 ~~~~l~~~~~~~~i----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                      +|.|||+++.+|.|          ......|.+++|.|+++-+-.-...|...+|
T Consensus       243 nG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  243 NGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             CCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            99999999999998          1235689999999998765443334444333

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.75  E-value=1.5e-16  Score=112.63  Aligned_cols=102  Identities=28%  Similarity=0.553  Sum_probs=91.4

Q ss_pred             cccceEEEEEccCC----CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCC
Q 043942           13 HKDSFSSLAFSTDG----QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADR   71 (216)
Q Consensus        13 h~~~v~~~~~s~~~----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~   71 (216)
                      |....+.++|+-+.    .++|.++.-|.|+|.|+.+++..+.+.+|...+                 .|..|++||+++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            67788889998743    479999999999999999999999998888766                 899999999999


Q ss_pred             cceeeee---eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 043942           72 GAYLNMF---SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG  114 (216)
Q Consensus        72 ~~~~~~~---~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~  114 (216)
                      ..++..+   .+|.+.|.++.|+++|.+|++++.|.++++|++...
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            9988775   579999999999999999999999999999999843

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.6e-16  Score=115.81  Aligned_cols=155  Identities=12%  Similarity=0.160  Sum_probs=126.0

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD   93 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~   93 (216)
                      .+.|+++.|+|....|++|+.|+.+++|.+..                        ++...++.+.-...+|.+..|.|+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDG------------------------k~N~~lqS~~l~~fPi~~a~f~p~  268 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG------------------------KVNPKLQSIHLEKFPIQKAEFAPN  268 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecC------------------------ccChhheeeeeccCccceeeecCC
Confidence            36899999999999999999999998887642                        234455666666789999999999


Q ss_pred             Cc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------
Q 043942           94 GK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------  163 (216)
Q Consensus        94 ~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------  163 (216)
                      |. .+++++....++.||+.+.+..+.-.....            ....+.....++++++|+..+..|.|         
T Consensus       269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e  336 (514)
T KOG2055|consen  269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE  336 (514)
T ss_pred             CceEEEecccceEEEEeeccccccccccCCCCc------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence            98 899999999999999998775443332111            23456777889999999999999998         


Q ss_pred             ----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          164 ----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       164 ----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                          ..-.+.|..++|+.+++.|++++.+|.|.+||++...++..
T Consensus       337 li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r  381 (514)
T KOG2055|consen  337 LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR  381 (514)
T ss_pred             hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence                34457899999999999999999999999999998766544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=1.7e-17  Score=122.17  Aligned_cols=171  Identities=15%  Similarity=0.224  Sum_probs=149.4

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeeeeecc
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNMFSGH   81 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~~~~~   81 (216)
                      ..+.+.++.+|++|+.|+..|.+-.+|..++++..++.......              ....++|||-. |..++.++.|
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~  209 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRH  209 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhc
Confidence            45678999999999999999999999999999988886544322              88899999965 7777888866


Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG  161 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  161 (216)
                       ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+..               ..+.+..++-+|-...+-+|..+|
T Consensus       210 -~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---------------~~G~~~vm~qNP~NaVih~GhsnG  273 (545)
T KOG1272|consen  210 -IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---------------GAGRTDVMKQNPYNAVIHLGHSNG  273 (545)
T ss_pred             -CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc---------------cCCccchhhcCCccceEEEcCCCc
Confidence             5599999999999999999999999999999999988876               567777788888888888888888


Q ss_pred             eE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          162 KV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       162 ~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      .+              ..|.++|.++++.++|+|++|.+.|..++|||++....+.
T Consensus       274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~  329 (545)
T KOG1272|consen  274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH  329 (545)
T ss_pred             eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence            88              6899999999999999999999999999999999877554

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.1e-16  Score=105.47  Aligned_cols=150  Identities=19%  Similarity=0.330  Sum_probs=121.1

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC--CCCcc--------------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGGI--------------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~~--------------------   59 (216)
                      .+|+..+.+.+|.+.|.++- +=+|-.+++|+.|.+|+.||++-..++.++..  +..+.                    
T Consensus       171 ~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg  249 (350)
T KOG0641|consen  171 GRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG  249 (350)
T ss_pred             CCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence            35778888999999998762 33578999999999999999998777776643  22221                    


Q ss_pred             -cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           60 -EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        60 -~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                       .|....+||++.+++++.+..|...|.|+.|+|...++++++.|..|++-|+. |...++++.          .+...|
T Consensus       250 ~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~----------~vv~eh  318 (350)
T KOG0641|consen  250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPI----------MVVAEH  318 (350)
T ss_pred             cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCce----------EEEEec
Confidence             78899999999999999999999999999999999999999999999999988 544444332          223338


Q ss_pred             ecCeEEEEeCCCCcEEEEecccCeE
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      .+.+..+.|+|+.--+++.+.|...
T Consensus       319 kdk~i~~rwh~~d~sfisssadkt~  343 (350)
T KOG0641|consen  319 KDKAIQCRWHPQDFSFISSSADKTA  343 (350)
T ss_pred             cCceEEEEecCccceeeeccCcceE
Confidence            8999999999988777877777643

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.74  E-value=2.2e-16  Score=121.43  Aligned_cols=180  Identities=18%  Similarity=0.221  Sum_probs=132.6

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--------ceEEEEeCCC-Ccc-------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--------NLQCTVEGPR-GGI-------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~-~~~-------------   59 (216)
                      .+|.+++++++|++.|+|++|+.||+++|+|+.|..|.+|...-.        ..++...... ...             
T Consensus        41 ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS  120 (1081)
T KOG1538|consen   41 SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWS  120 (1081)
T ss_pred             CCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccC
Confidence            468889999999999999999999999999999999999986532        1122111100 000             


Q ss_pred             -------------------------------cCcEEEEEECCCcceeeee---eccCCCeeEEEEcCCC-----cEEEEe
Q 043942           60 -------------------------------EDSTVWMWNADRGAYLNMF---SGHGSGLTCGDFTTDG-----KTICTG  100 (216)
Q Consensus        60 -------------------------------~~~~v~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~-----~~l~t~  100 (216)
                                                     .+|+|.+-+-. +++...+   .+.+.+|.+++|+|..     ..+++.
T Consensus       121 ~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~  199 (1081)
T KOG1538|consen  121 PEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA  199 (1081)
T ss_pred             hhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence                                           56666665433 3222223   3467899999999953     467777


Q ss_pred             cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------Eeee
Q 043942          101 SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DGHI  167 (216)
Q Consensus       101 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~  167 (216)
                      ....++.++.+. |+.+..-..               ......|+.+-++|.++..|+.|+.+             ....
T Consensus       200 DW~qTLSFy~Ls-G~~Igk~r~---------------L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D  263 (1081)
T KOG1538|consen  200 DWGQTLSFYQLS-GKQIGKDRA---------------LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQD  263 (1081)
T ss_pred             eccceeEEEEec-ceeeccccc---------------CCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccc
Confidence            777777777766 544432222               45566788999999999999999877             2345


Q ss_pred             CCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          168 DAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       168 ~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      .+|+.+...|++++++.|..||+|-.|++..
T Consensus       264 ~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  264 SWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             eeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            7999999999999999999999999998753

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=2.2e-15  Score=108.16  Aligned_cols=159  Identities=14%  Similarity=0.176  Sum_probs=126.8

Q ss_pred             CEEEEEcCCC--cEEEEECCCCceEEEEeCCCCcc------------cCcEEEEEECCCcceeeeeec---cCCCeeEEE
Q 043942           27 QLLASGGFHG--LVQNRDTSSRNLQCTVEGPRGGI------------EDSTVWMWNADRGAYLNMFSG---HGSGLTCGD   89 (216)
Q Consensus        27 ~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~------------~~~~v~i~d~~~~~~~~~~~~---~~~~v~~~~   89 (216)
                      .++|..+.+.  .+++.++..+..+..+..+..-.            -...|+|||+++-+.++++..   +...+..++
T Consensus        57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS  136 (391)
T KOG2110|consen   57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALS  136 (391)
T ss_pred             ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeec
Confidence            4555555443  48888888887777777666543            444599999999988887754   334566666


Q ss_pred             EcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----
Q 043942           90 FTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----  163 (216)
Q Consensus        90 ~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----  163 (216)
                      +++.+.+++.-+  ..|.|.+||+.+-+....+..               |.+.+-+++|+++|.+||++++.|+|    
T Consensus       137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a---------------H~~~lAalafs~~G~llATASeKGTVIRVf  201 (391)
T KOG2110|consen  137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA---------------HKGPLAALAFSPDGTLLATASEKGTVIRVF  201 (391)
T ss_pred             cCCCCceEEecCCCCCceEEEEEcccceeeeEEEe---------------cCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence            666677887533  568999999999999999987               99999999999999999999999998    


Q ss_pred             -------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          164 -------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       164 -------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                                   -.....|.+++|+|++++|++.|..++|++|.++...
T Consensus       202 ~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  202 SVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence                         1113579999999999999999999999999998644

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.74  E-value=3e-16  Score=110.97  Aligned_cols=169  Identities=19%  Similarity=0.327  Sum_probs=130.8

Q ss_pred             cceEEEEEc-------cCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC--Ccc------------------cCcEEEEE
Q 043942           15 DSFSSLAFS-------TDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR--GGI------------------EDSTVWMW   67 (216)
Q Consensus        15 ~~v~~~~~s-------~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~~------------------~~~~v~i~   67 (216)
                      ..|+..+|-       |+..++|+.+.+.-|++||.-+|+....+..-.  ..+                  .++.|+++
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvF  184 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVF  184 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEe
Confidence            467777775       667899999999999999999998776664311  111                  78899999


Q ss_pred             EC-CCcceeeee-------eccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           68 NA-DRGAYLNMF-------SGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        68 d~-~~~~~~~~~-------~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      |+ +.|+....+       .+..+.+.+++|+|. ...++.|+.-..+-++.-..+.++..+..               |
T Consensus       185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg---------------h  249 (406)
T KOG2919|consen  185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG---------------H  249 (406)
T ss_pred             eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc---------------c
Confidence            99 555432221       133677899999994 55899999999999999888888888876               9


Q ss_pred             ecCeEEEEeCCCCcEEEEeccc-CeE---------------EeeeC-CEE--EEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVD-GKV---------------DGHID-AIQ--SLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~-~~i---------------~~~~~-~i~--~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      .+.|+.++|.++|+.|++|... ..|               ..|.. .-.  -+...|++++|++|+.||.|++||++.
T Consensus       250 ~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  250 GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            9999999999999999999863 333               22322 222  345578999999999999999999988

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=1.3e-16  Score=112.35  Aligned_cols=115  Identities=22%  Similarity=0.314  Sum_probs=103.4

Q ss_pred             eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc-
Q 043942           74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK-  152 (216)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  152 (216)
                      ++..+.+|.+.+++++.+  +.++++|+.|-+|++||+++......+-.               |.+.|+++.|.+... 
T Consensus        35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~---------------HagsitaL~F~~~~S~   97 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS---------------HAGSITALKFYPPLSK   97 (362)
T ss_pred             ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec---------------cccceEEEEecCCcch
Confidence            456678999999999985  89999999999999999999888887776               999999999998765 


Q ss_pred             -EEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          153 -YLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       153 -~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                       .|++|++||.|              .+|.+.|+.++.+|.|++-++.+.|+.+++||+-+++....+
T Consensus        98 shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~  165 (362)
T KOG0294|consen   98 SHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL  165 (362)
T ss_pred             hheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence             89999999998              788999999999999999999999999999999988765443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.74  E-value=1.3e-16  Score=112.87  Aligned_cols=176  Identities=15%  Similarity=0.235  Sum_probs=127.2

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCce------------EEEEeCCCCcc------------------------
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL------------QCTVEGPRGGI------------------------   59 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~------------~~~~~~~~~~~------------------------   59 (216)
                      -...+.|+|||..|++-+.|..+++|++.....            ...+....+..                        
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            456789999999999999999999999864211            11111111111                        


Q ss_pred             cCcEEEEEECCCcceeeeeec--cCC---CeeEEEEcCCCcEEEEecCCCeEEEEeC-CCCceeEEeecccccccccceE
Q 043942           60 EDSTVWMWNADRGAYLNMFSG--HGS---GLTCGDFTTDGKTICTGSDNATLSIWNP-KGGENFHAIRRSSLEFSLNYWM  133 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~t~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~  133 (216)
                      .+..|++||.-+|+....+++  |..   ...++.|+|||.+|..| ..+.|+++|+ +.|..-.....-..        
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~--------  201 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK--------  201 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc--------
Confidence            788899999999987766654  333   34689999999999876 5678999999 55543222211000        


Q ss_pred             EEeeeecCeEEEEeCCCCc-EEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeC-CCcEEEEEcc
Q 043942          134 ICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSV-DGTARVFEIA  197 (216)
Q Consensus       134 ~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~  197 (216)
                      -..+..+.+.+++|+|... .++.++....+              .+|.+.|+.+.|+++|+.|.+|+. |-.|..||++
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence            0112456788999999554 77887776655              689999999999999999999876 7899999998


Q ss_pred             ccc
Q 043942          198 EFR  200 (216)
Q Consensus       198 ~~~  200 (216)
                      ..+
T Consensus       282 ~~~  284 (406)
T KOG2919|consen  282 YSR  284 (406)
T ss_pred             hcc
Confidence            754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.9e-15  Score=103.17  Aligned_cols=180  Identities=16%  Similarity=0.212  Sum_probs=124.9

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce------EEEEeCC--C-----------------Ccc-
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL------QCTVEGP--R-----------------GGI-   59 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~------~~~~~~~--~-----------------~~~-   59 (216)
                      ++...++|.++|+.++|.  ..+|++|+ ||.|+-|..+....      +.+...+  .                 +.+ 
T Consensus        54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence            455668999999999998  35677777 69999998654322      1111111  1                 111 


Q ss_pred             ---cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942           60 ---EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT  136 (216)
Q Consensus        60 ---~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (216)
                         .|+.++-||+++|+..+++++|+..+.++.-......+++|+.||++++||.++++.++.+.......-.+     .
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR-----p  205 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR-----P  205 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC-----c
Confidence               89999999999999999999999999999986667789999999999999999999988887532211111     0


Q ss_pred             eeecCeEEEEeCCCCcEEEEecccCeE------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          137 SLYDGVTCLSWPGTSKYLVTGCVDGKV------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      ....-|.+++-  +..++++|+....-            ..-..++..+.|  ....++++++.+.|.-|.+.
T Consensus       206 ~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F--~~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  206 DWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDF--VDDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEecccceeEeee--ecceEEEeccccceeeeeec
Confidence            01223444443  44577776554432            333456666677  44567788877888888764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=2e-15  Score=104.18  Aligned_cols=154  Identities=14%  Similarity=0.193  Sum_probs=102.0

Q ss_pred             EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeec-cCCCeeEEEEcCCCcEE
Q 043942           19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSG-HGSGLTCGDFTTDGKTI   97 (216)
Q Consensus        19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l   97 (216)
                      .+.|+|+|++|+.-..-    -.| .+++...         ....++..+.+. .+...+.- ..++|.+++|+|+++.+
T Consensus        10 ~~~W~~~G~~l~~~~~~----~~~-~~~ks~~---------~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~f   74 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQT----RVD-KSGKSYY---------GEFELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEF   74 (194)
T ss_pred             EEEecccCCEEEEEEEE----eec-cCcceEE---------eeEEEEEEecCC-CccceeeccCCCceEEEEECcCCCEE
Confidence            68899999887754420    000 0111100         122333333332 33344432 34579999999999987


Q ss_pred             EEe--cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc---CeE---------
Q 043942           98 CTG--SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD---GKV---------  163 (216)
Q Consensus        98 ~t~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---~~i---------  163 (216)
                      ++.  ..++.+.+||++ ++.+..+                 ....++.+.|+|+|+++++++.+   |.+         
T Consensus        75 avi~g~~~~~v~lyd~~-~~~i~~~-----------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen   75 AVIYGSMPAKVTLYDVK-GKKIFSF-----------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             EEEEccCCcccEEEcCc-ccEeEee-----------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence            554  467899999997 6666655                 34677899999999999998754   445         


Q ss_pred             ---EeeeCCEEEEEEecCCCeEEEEeC------CCcEEEEEcccccceeecC
Q 043942          164 ---DGHIDAIQSLSVSAIRESLVSVSV------DGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       164 ---~~~~~~i~~~~~~~~~~~l~s~~~------d~~v~vw~~~~~~~~~~~~  206 (216)
                         ......++.++|+|+|++|++++.      |+.++||++. ++.+.+.+
T Consensus       137 ~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  137 KISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence               223346799999999999998764      7899999985 55555443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=9.7e-16  Score=120.43  Aligned_cols=184  Identities=16%  Similarity=0.249  Sum_probs=145.1

Q ss_pred             CCCceeEEeeccccceEEEEEccCC---CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDG---QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------   59 (216)
                      .+|++++.+.+|..++..+.+.|..   .++.+++.||.|++||...+.+++++.......                   
T Consensus        45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~  124 (792)
T KOG1963|consen   45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV  124 (792)
T ss_pred             chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence            5788999999999999999999854   478899999999999999998887775433211                   


Q ss_pred             ------------------------------------------------------cCcEEEEEECCCcceeee----eecc
Q 043942           60 ------------------------------------------------------EDSTVWMWNADRGAYLNM----FSGH   81 (216)
Q Consensus        60 ------------------------------------------------------~~~~v~i~d~~~~~~~~~----~~~~   81 (216)
                                                                            .+..+.+|+..++.....    -..|
T Consensus       125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H  204 (792)
T KOG1963|consen  125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH  204 (792)
T ss_pred             ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence                                                                  455566777665431111    1136


Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC--C--ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKG--G--ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG  157 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  157 (216)
                      ...+++.+++|+++++++|..||.|.+|.--.  .  .....+..               |.++|++++|+++|.+|++|
T Consensus       205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW---------------H~~~V~~L~fS~~G~~LlSG  269 (792)
T KOG1963|consen  205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW---------------HHDEVNSLSFSSDGAYLLSG  269 (792)
T ss_pred             cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe---------------cccccceeEEecCCceEeec
Confidence            66689999999999999999999999997442  1  22344444               88899999999999999999


Q ss_pred             cccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          158 CVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       158 ~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +.++.+             ..-.++|..+.++||+.+.+....|+.|.+-...+..
T Consensus       270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence            999988             2335789999999999999999999999998875543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.71  E-value=6.4e-17  Score=115.79  Aligned_cols=146  Identities=23%  Similarity=0.303  Sum_probs=120.1

Q ss_pred             CceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeC--CCCcc-------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGGI-------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~~-------------~~~~v~i~   67 (216)
                      ..+++.+.--.+.|.++.|+|-. ..|++|+.|+.|.+||++...+++.+..  ....+             +|..++.|
T Consensus       177 ~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~  256 (433)
T KOG0268|consen  177 DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTY  256 (433)
T ss_pred             CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceeh
Confidence            34667777677889999999954 6788998999999999999877765432  11111             89999999


Q ss_pred             ECCC-cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           68 NADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        68 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      |++. ..++....+|.++|.+++|+|.|+.+++||.|++|++|..+.+.....+...              .-..|.++.
T Consensus       257 DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--------------RMq~V~~Vk  322 (433)
T KOG0268|consen  257 DMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--------------RMQHVFCVK  322 (433)
T ss_pred             hhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--------------hhheeeEEE
Confidence            9985 4677888999999999999999999999999999999999987765544321              346799999


Q ss_pred             eCCCCcEEEEecccCeE
Q 043942          147 WPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i  163 (216)
                      |+.|.+++++|++|+.+
T Consensus       323 ~S~Dskyi~SGSdd~nv  339 (433)
T KOG0268|consen  323 YSMDSKYIISGSDDGNV  339 (433)
T ss_pred             EeccccEEEecCCCcce
Confidence            99999999999999998

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=5.4e-17  Score=122.03  Aligned_cols=163  Identities=18%  Similarity=0.271  Sum_probs=120.2

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG   84 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~   84 (216)
                      .+.+.|.||.+-|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..                         .-.+|...
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-------------------------I~TgHtaN   95 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-------------------------ISTGHTAN   95 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee-------------------------eecccccc
Confidence            34567899999999999999999999999888888887654333222                         12479999


Q ss_pred             eeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccC
Q 043942           85 LTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDG  161 (216)
Q Consensus        85 v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~  161 (216)
                      |.++.|-|  +.+.+++|..|..|+++|+...+.-..-..     .........-|...|..++-.|++ ..+.++++||
T Consensus        96 IFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~-----~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG  170 (758)
T KOG1310|consen   96 IFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG-----MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG  170 (758)
T ss_pred             eeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC-----ccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence            99999998  567899999999999999985321110000     000001111278889999999988 7899999999


Q ss_pred             eE------Eee------------------eCCEEEEEEecCC-CeEEEEeCCCcEEEEEcc
Q 043942          162 KV------DGH------------------IDAIQSLSVSAIR-ESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       162 ~i------~~~------------------~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~  197 (216)
                      .+      ..|                  --...++..+|.. .+|+.|+.|.-.++||.+
T Consensus       171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            99      111                  1245788889865 578899999999999954

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.71  E-value=7.9e-16  Score=108.60  Aligned_cols=158  Identities=15%  Similarity=0.188  Sum_probs=130.6

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG   84 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~   84 (216)
                      ++..+++.|...|+++.|+|..+.|++|+.|..-++|...++.                       +.++...+..++..
T Consensus        46 ~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~-----------------------~WkptlvLlRiNrA  102 (361)
T KOG1523|consen   46 EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG-----------------------TWKPTLVLLRINRA  102 (361)
T ss_pred             eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC-----------------------eeccceeEEEeccc
Confidence            5678899999999999999999999999999999988874322                       12344456668899


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee----EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENF----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      .+++.|+|.++.+++|+..+.|.||-++....=    +.-..               +...|+++.|+|++-++++|+.|
T Consensus       103 At~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkP---------------irStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen  103 ATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKP---------------IRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             eeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCc---------------cccceeeeeccCCcceecccccC
Confidence            999999999999999999999999887744321    11112               67889999999999999999999


Q ss_pred             CeE--------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          161 GKV--------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       161 ~~i--------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +..                                ....+.+..+.|+|+|..|+-.+.|.++.+=|...+.
T Consensus       168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            876                                2445789999999999999999999999998877654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=1.8e-16  Score=114.85  Aligned_cols=167  Identities=21%  Similarity=0.328  Sum_probs=127.4

Q ss_pred             ccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942           14 KDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT   92 (216)
Q Consensus        14 ~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~   92 (216)
                      ..+|..+.|.++.. .||||+.|..|++|.++.++.-.         .+..|        .....+..|...|+++.|+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~---------~~~~V--------~y~s~Ls~H~~aVN~vRf~p   75 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG---------GDMKV--------EYLSSLSRHTRAVNVVRFSP   75 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCC---------CceeE--------EEeecccCCcceeEEEEEcC
Confidence            35899999999765 99999999999999887654211         00111        23456778999999999999


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCceeEEeecc-cccc---cccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----
Q 043942           93 DGKTICTGSDNATLSIWNPKGGENFHAIRRS-SLEF---SLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----  163 (216)
Q Consensus        93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----  163 (216)
                      +|..|++|+++|.+.+|-...-...   ... ....   ....+....+|...+..++|+|++.++++++.|..+     
T Consensus        76 ~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv  152 (434)
T KOG1009|consen   76 DGELLASGGDGGEVFLWKQGDVRIF---DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV  152 (434)
T ss_pred             CcCeeeecCCCceEEEEEecCcCCc---cccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence            9999999999999999987641111   110 1111   112234455688999999999999999999999877     


Q ss_pred             ---------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          164 ---------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       164 ---------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                               ..|...+..++|.|.++++++-+.|...+.+.+...+
T Consensus       153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence                     6788899999999999999999999877777765433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=4.2e-15  Score=115.05  Aligned_cols=186  Identities=18%  Similarity=0.180  Sum_probs=123.5

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCC---CcEEEEECCCCce--EEEEeCCCCcc--------------cCcE-
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFH---GLVQNRDTSSRNL--QCTVEGPRGGI--------------EDST-   63 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~vwd~~~~~~--~~~~~~~~~~~--------------~~~~-   63 (216)
                      |...+.+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++.  +..+.++....              .++. 
T Consensus       193 g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~  272 (429)
T PRK01742        193 GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVL  272 (429)
T ss_pred             CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcE
Confidence            33455677788889999999999999987654   3699999988753  22233222211              3454 


Q ss_pred             -EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeec
Q 043942           64 -VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        64 -v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                       |++||+.++.. ..+..+...+....|+|||+.|+.++ .++...+|++... .....+.                +..
T Consensus       273 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~----------------~~~  335 (429)
T PRK01742        273 NIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG----------------GRG  335 (429)
T ss_pred             EEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec----------------CCC
Confidence             44556665543 45566777788999999999877554 6778888876532 2222221                222


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE---------E--eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc--cccceeecCC
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV---------D--GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA--EFRRATKAPS  207 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i---------~--~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~--~~~~~~~~~~  207 (216)
                        ....|+|+|++++..+.++.+         .  ........+.|+|+|++|+.++.++...+|.+.  +++....++.
T Consensus       336 --~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~  413 (429)
T PRK01742        336 --YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG  413 (429)
T ss_pred             --CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence              356799999999887766544         0  001123567899999999999999988888864  3555555544


Q ss_pred             c
Q 043942          208 Y  208 (216)
Q Consensus       208 ~  208 (216)
                      +
T Consensus       414 ~  414 (429)
T PRK01742        414 S  414 (429)
T ss_pred             C
Confidence            3

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=3.9e-15  Score=107.62  Aligned_cols=182  Identities=16%  Similarity=0.189  Sum_probs=135.2

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-----eEEEEeCCCCc----------c-----cC--cEEEEEECCC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-----LQCTVEGPRGG----------I-----ED--STVWMWNADR   71 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~----------~-----~~--~~v~i~d~~~   71 (216)
                      .++|..+...  ...|++|-.+|.+.+|....+.     ....-.++...          +     ..  ..+.+||+++
T Consensus       105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~  182 (412)
T KOG3881|consen  105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ  182 (412)
T ss_pred             cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence            3455555443  2368888899999999988443     22211111110          0     33  7789999998


Q ss_pred             cceeeeeeccC---------CCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEeeee
Q 043942           72 GAYLNMFSGHG---------SGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        72 ~~~~~~~~~~~---------~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      .+++..-+...         -.++++.|-+.  ...+++++.-+.+++||.+.++ ++..+..               ..
T Consensus       183 ~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~---------------~E  247 (412)
T KOG3881|consen  183 SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF---------------LE  247 (412)
T ss_pred             ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc---------------cc
Confidence            86665543221         24678889886  8899999999999999999664 5667766               67


Q ss_pred             cCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      .+++++...|++++++++...+.+               .+..+.|.++..+|.++++++||.|..|||+|+.+.+.+.+
T Consensus       248 ~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  248 NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             CcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            899999999999999999988877               45568899999999999999999999999999999776665


Q ss_pred             cCCcceeE
Q 043942          205 APSYSFKL  212 (216)
Q Consensus       205 ~~~~~~~~  212 (216)
                      ...-+..-
T Consensus       328 vYvKs~lt  335 (412)
T KOG3881|consen  328 VYVKSRLT  335 (412)
T ss_pred             hhhhcccc
Confidence            44433333

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=2.6e-16  Score=118.11  Aligned_cols=169  Identities=16%  Similarity=0.255  Sum_probs=125.0

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------cCcEEEEE
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------EDSTVWMW   67 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------~~~~v~i~   67 (216)
                      -|...|.|+.|+.+...+.+++.+..+.-||+.+. ....+..++..+                        .||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            36677889999988776666665444444554432 222111111100                        67777776


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      +- .++....+.+|.+.+.+-.|+|+|.-|++++.||.|++|. ++|....++..               ...+|+|++|
T Consensus        91 ~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q---------------~~~~v~c~~W  153 (737)
T KOG1524|consen   91 NK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQ---------------NEESIRCARW  153 (737)
T ss_pred             cc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhh---------------cCceeEEEEE
Confidence            53 3556667889999999999999999999999999999998 44665555543               6678999999


Q ss_pred             CCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          148 PGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      .|+.+-++-+..+...             .+|.+-|.++.|++....+++|++|-..+|||-..
T Consensus       154 ~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G  217 (737)
T KOG1524|consen  154 APNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG  217 (737)
T ss_pred             CCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence            9988766555444433             89999999999999999999999999999999653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=4.2e-15  Score=103.84  Aligned_cols=145  Identities=14%  Similarity=0.229  Sum_probs=106.5

Q ss_pred             ceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCC-c--c------------------cCc
Q 043942            5 DWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-G--I------------------EDS   62 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~--~------------------~~~   62 (216)
                      .....|-+|..+|+.++|...+ +.||+.+.||.||++|++..+....+..... .  .                  ...
T Consensus       187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence            3466788999999999999965 6899999999999999998765554433222 1  1                  678


Q ss_pred             EEEEEECCC-cceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           63 TVWMWNADR-GAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        63 ~v~i~d~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      .|.+.|++. ..++..+++|.+.|+.++|.| ....|+|++.|..+.+||+.+.-... ...+-+.         -.-..
T Consensus       267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~-~~dPila---------y~a~~  336 (364)
T KOG0290|consen  267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN-GEDPILA---------YTAGG  336 (364)
T ss_pred             eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC-CCCchhh---------hhccc
Confidence            899999995 467889999999999999999 46789999999999999998543200 0000000         00456


Q ss_pred             CeEEEEeCC-CCcEEEEecc
Q 043942          141 GVTCLSWPG-TSKYLVTGCV  159 (216)
Q Consensus       141 ~v~~~~~~~-~~~~l~~~~~  159 (216)
                      +|+.+.|++ .+.+++.+..
T Consensus       337 EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  337 EVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             eeeeeeecccCCCEEEEEec
Confidence            778888875 4456665543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=1.8e-13  Score=96.77  Aligned_cols=142  Identities=14%  Similarity=0.260  Sum_probs=112.5

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC-CCceEEEEeCCCCc--c-----------------cCcEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS-SRNLQCTVEGPRGG--I-----------------EDSTV   64 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~--~-----------------~~~~v   64 (216)
                      +++.++. -..+|.++.++++  .+++.- ++.|+||... +.+.+..++....+  .                 .-|.|
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            4455554 4568888888875  455554 6789999988 45555555432211  1                 66899


Q ss_pred             EEEECCCcce--eeeeeccCCCeeEEEEcCCCcEEEEecCCCe-EEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942           65 WMWNADRGAY--LNMFSGHGSGLTCGDFTTDGKTICTGSDNAT-LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        65 ~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      .|-|+...+.  ...+.+|.+.|.|++.+.+|..+||+|..|+ |++||..+|..++++....             ....
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-------------d~A~  228 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-------------DRAD  228 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-------------chhe
Confidence            9999875444  4678899999999999999999999999988 8999999999999987533             5678


Q ss_pred             eEEEEeCCCCcEEEEecccCeE
Q 043942          142 VTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      |++++|+|++.+|+++++.|++
T Consensus       229 iy~iaFSp~~s~LavsSdKgTl  250 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSSDKGTL  250 (346)
T ss_pred             EEEEEeCCCccEEEEEcCCCeE
Confidence            9999999999999999999998

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.66  E-value=1.2e-15  Score=117.49  Aligned_cols=137  Identities=20%  Similarity=0.342  Sum_probs=113.2

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK   95 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~   95 (216)
                      .|+.++|-|||..|+.+.                           +..+.+||.+.|..++++++|...|.+++|+.||+
T Consensus        14 ci~d~afkPDGsqL~lAA---------------------------g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk   66 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA---------------------------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK   66 (1081)
T ss_pred             chheeEECCCCceEEEec---------------------------CCEEEEEeCCCcccccccccccceEEEEEEccCCc
Confidence            799999999998777665                           34567778888888899999999999999999999


Q ss_pred             EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------E
Q 043942           96 TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------D  164 (216)
Q Consensus        96 ~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------~  164 (216)
                      .+++|+.|+.|.+|.-.-.- ...+.                |.+.|.|+.|+|-...+++++-...-           .
T Consensus        67 rFASG~aDK~VI~W~~klEG-~LkYS----------------H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~  129 (1081)
T KOG1538|consen   67 RFASGSADKSVIIWTSKLEG-ILKYS----------------HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKH  129 (1081)
T ss_pred             eeccCCCceeEEEecccccc-eeeec----------------cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhh
Confidence            99999999999999865222 22222                89999999999999999888654322           3


Q ss_pred             eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          165 GHIDAIQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       165 ~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                      .....+.+++|..||++|+.|-.+|+|.+-+-
T Consensus       130 kss~R~~~CsWtnDGqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen  130 KSSSRIICCSWTNDGQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             hhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence            33467899999999999999999999999764

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.65  E-value=3.1e-15  Score=114.61  Aligned_cols=181  Identities=14%  Similarity=0.156  Sum_probs=127.5

Q ss_pred             eeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCce----------------EEEEeCCCCcc------cCc
Q 043942            6 WASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNL----------------QCTVEGPRGGI------EDS   62 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~----------------~~~~~~~~~~~------~~~   62 (216)
                      -+..+.+|.+.|+++.|+| +..+||||+.|..|+||.+..+-.                ...+..|....      ..+
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            4556778999999999999 567899999999999999984311                12223333221      789


Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-CceeEEeecccccccccceEEEeeeecC
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      ++++||+.+++.+..+.+|...|.+..|+.||..+++++.|+.|++||.+. ++.++....               |.+.
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~---------------H~~~  215 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEG---------------HGGM  215 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccc---------------cccc
Confidence            999999999999999999999999999999999999999999999999985 455555543               3221


Q ss_pred             -eEEEEeCCCCcEEEEecccC-eE-------------------EeeeCCEEEEEEecCCCeEEE-EeCCCcEEEEEcccc
Q 043942          142 -VTCLSWPGTSKYLVTGCVDG-KV-------------------DGHIDAIQSLSVSAIRESLVS-VSVDGTARVFEIAEF  199 (216)
Q Consensus       142 -v~~~~~~~~~~~l~~~~~~~-~i-------------------~~~~~~i~~~~~~~~~~~l~s-~~~d~~v~vw~~~~~  199 (216)
                       -..+.|--+-..|++.+.+. .+                   ....-.|.--.|+||.++|+- |-.+.++..+.+...
T Consensus       216 rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~  295 (1012)
T KOG1445|consen  216 RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDR  295 (1012)
T ss_pred             hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCC
Confidence             22344444333343333221 11                   112234455567888887665 445788888887665


Q ss_pred             cc
Q 043942          200 RR  201 (216)
Q Consensus       200 ~~  201 (216)
                      ++
T Consensus       296 qP  297 (1012)
T KOG1445|consen  296 QP  297 (1012)
T ss_pred             Cc
Confidence            43

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.64  E-value=4.6e-13  Score=102.61  Aligned_cols=183  Identities=28%  Similarity=0.473  Sum_probs=141.9

Q ss_pred             eeEEeecccc-ceEEEEE-ccCCC-EEEEEcC-CCcEEEEECCC-CceEEEEeCCCCcc----------------c-CcE
Q 043942            6 WASEILGHKD-SFSSLAF-STDGQ-LLASGGF-HGLVQNRDTSS-RNLQCTVEGPRGGI----------------E-DST   63 (216)
Q Consensus         6 ~~~~~~~h~~-~v~~~~~-s~~~~-~l~s~~~-d~~v~vwd~~~-~~~~~~~~~~~~~~----------------~-~~~   63 (216)
                      ....+..+.. .+..+.+ ++++. .++..+. |+.+++|+... ......+..|...+                . ++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  179 (466)
T COG2319         100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT  179 (466)
T ss_pred             eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence            4555555433 6777777 78887 5555455 99999999998 66666666655433                3 899


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeE-EeecccccccccceEEEeeeecC
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFH-AIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      +++|+..++..+..+.+|...+.+++|+|++. .+++++.|+.+++||...+.... .+..               |...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~---------------~~~~  244 (466)
T COG2319         180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG---------------HSDS  244 (466)
T ss_pred             eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC---------------CCcc
Confidence            99999999888888988999999999999998 55566999999999988776666 3443               5555


Q ss_pred             eEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          142 VTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      . ...|+|++.++++++.++.+               ..|...+.++.|+|++..+++++.|+.+++|+.........
T Consensus       245 ~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  321 (466)
T COG2319         245 V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS  321 (466)
T ss_pred             e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence            3 33899999888888888877               14678999999999888888888898899998877654443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.63  E-value=3.6e-13  Score=103.23  Aligned_cols=177  Identities=32%  Similarity=0.559  Sum_probs=143.0

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeCCC-------------Cc-c------cCcEEEEE
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEGPR-------------GG-I------EDSTVWMW   67 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~-------------~~-~------~~~~v~i~   67 (216)
                      .+..|...+.++.+.+.+..++.++.|+.+.+|+..... ....+....             .. .      .++.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            456789999999999999999999999999999998875 443333311             11 1      48899999


Q ss_pred             ECCC-cceeeeeeccCCCeeEEEEcCCCcEEEEecC-CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           68 NADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        68 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      |... ......+..|...|..++|+|+++.+++++. |+.+++|++..+..+..+..               |...+.++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~  204 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG---------------HTDPVSSL  204 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc---------------CCCceEEE
Confidence            9998 7788888899999999999999998888885 99999999998777777776               88999999


Q ss_pred             EeCCCCc-EEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          146 SWPGTSK-YLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       146 ~~~~~~~-~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      +|+|++. .+++++.|+.+               ..|.... -..|+|++.++++++.|+.+++|++.....
T Consensus       205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            9999998 55554777766               1222332 227999998899999999999999987654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=4.6e-15  Score=111.70  Aligned_cols=175  Identities=15%  Similarity=0.184  Sum_probs=134.2

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCee
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLT   86 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~   86 (216)
                      ..++..|.+.|..++|.|....|++++.|+.+++|+++....-                  +...-+++.++++|.++|.
T Consensus       287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s------------------~~~~~epi~tfraH~gPVl  348 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS------------------AEKDVEPILTFRAHEGPVL  348 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc------------------cccceeeeEEEecccCceE
Confidence            3477789999999999999899999999999999998431100                  0011357788999999999


Q ss_pred             EEEEcCCCcEEEEecCCCeEEEEeCCCCcee-EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942           87 CGDFTTDGKTICTGSDNATLSIWNPKGGENF-HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--  163 (216)
Q Consensus        87 ~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--  163 (216)
                      |+++.+++..+.+|+.||+|+.|++-...-. -....      ........+|.+.+..+++++....|++++.||++  
T Consensus       349 ~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~  422 (577)
T KOG0642|consen  349 CVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDP------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRL  422 (577)
T ss_pred             EEEecCCceEEEeeccCceeeeeccCCCCCcccccCc------chhccceeccccceeeeeecccccceeeecCCceEEe
Confidence            9999999999999999999999976522110 00000      00112234599999999999999999999999988  


Q ss_pred             ---------------------------------------------------------------EeeeCCEEEEEEecCCC
Q 043942          164 ---------------------------------------------------------------DGHIDAIQSLSVSAIRE  180 (216)
Q Consensus       164 ---------------------------------------------------------------~~~~~~i~~~~~~~~~~  180 (216)
                                                                                     ......+..+.++|.+.
T Consensus       423 w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~  502 (577)
T KOG0642|consen  423 WEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD  502 (577)
T ss_pred             eccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence                                                                           11124567788899999


Q ss_pred             eEEEEeCCCcEEEEEcccccceeec
Q 043942          181 SLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       181 ~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      +.+++..|+.|+++|..+++.+...
T Consensus       503 ~~~~~hed~~Ir~~dn~~~~~l~s~  527 (577)
T KOG0642|consen  503 ITFTAHEDRSIRFFDNKTGKILHSM  527 (577)
T ss_pred             eeEecccCCceecccccccccchhe
Confidence            9999999999999999988866543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=3.5e-13  Score=104.27  Aligned_cols=185  Identities=15%  Similarity=0.107  Sum_probs=117.5

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEc---CCCcEEEEECCCCceEEE--EeCCCCcc----------------cCc
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGG---FHGLVQNRDTSSRNLQCT--VEGPRGGI----------------EDS   62 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---~d~~v~vwd~~~~~~~~~--~~~~~~~~----------------~~~   62 (216)
                      |...+.+..+...+.+.+|+|||+.|+..+   .+..+.+|++.+++....  +..+....                .+.
T Consensus       188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~  267 (429)
T PRK03629        188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSL  267 (429)
T ss_pred             CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCc
Confidence            333455556677899999999999988654   245799999988754332  22221111                223


Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC-C--eEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN-A--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      .|++||+.+++... +..+...+....|+|||+.|+..+.+ +  .|+.+|+.+++.. .+..               ..
T Consensus       268 ~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---------------~~  330 (429)
T PRK03629        268 NLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---------------EG  330 (429)
T ss_pred             EEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---------------CC
Confidence            68899998876544 33344567899999999988776654 3  4555677665433 2322               23


Q ss_pred             cCeEEEEeCCCCcEEEEecccC---eE----------E--eeeCCEEEEEEecCCCeEEEEeCCCc---EEEEEcccccc
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDG---KV----------D--GHIDAIQSLSVSAIRESLVSVSVDGT---ARVFEIAEFRR  201 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~---~i----------~--~~~~~i~~~~~~~~~~~l~s~~~d~~---v~vw~~~~~~~  201 (216)
                      .......|+|+|++++..+.++   .+          .  ..........|+|||++|+.++.++.   +.++++. ++.
T Consensus       331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~  409 (429)
T PRK03629        331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRF  409 (429)
T ss_pred             CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCC
Confidence            3455788999999887755432   12          0  00112346789999999998887764   5667763 333


Q ss_pred             eeecC
Q 043942          202 ATKAP  206 (216)
Q Consensus       202 ~~~~~  206 (216)
                      ...++
T Consensus       410 ~~~l~  414 (429)
T PRK03629        410 KARLP  414 (429)
T ss_pred             eEECc
Confidence            34343

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.62  E-value=1.2e-14  Score=101.56  Aligned_cols=178  Identities=14%  Similarity=0.202  Sum_probs=118.3

Q ss_pred             EeeccccceEEEEEcc-CCCEEEEEcCCC-------cEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeee-
Q 043942            9 EILGHKDSFSSLAFST-DGQLLASGGFHG-------LVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFS-   79 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~-------~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~-   79 (216)
                      .|..|.+.|+.++-+| +.+.|+|+-.+-       .+.||.+.......                 +..+-+++..+. 
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S-----------------~~~tlE~v~~Ldt  120 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS-----------------NSSTLECVASLDT  120 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc-----------------ccchhhHhhcCCH
Confidence            4556778899999998 445666654321       13344433211000                 000112233333 


Q ss_pred             ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCC--CCcEEEE
Q 043942           80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG--TSKYLVT  156 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~  156 (216)
                      .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+.....          ..+....++-+|+|  +++.+++
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s----------~e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES----------AEMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccc----------ccccceecccccCCCCccceEEE
Confidence            3446899999999999998875 88999999998766 444433111          11456677888988  7777776


Q ss_pred             ecccCeE--------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEccccc-ceeecCCcceeEEE
Q 043942          157 GCVDGKV--------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFR-RATKAPSYSFKLFF  214 (216)
Q Consensus       157 ~~~~~~i--------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~-~~~~~~~~~~~~~~  214 (216)
                      .+....-              .+|...|..+.|+|+.+ +|++|+.||.|++||.+..+ ++..++.|+--++.
T Consensus       190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence            5543222              78889999999999976 57899999999999999754 55678888766553

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=3.1e-14  Score=98.24  Aligned_cols=103  Identities=17%  Similarity=0.305  Sum_probs=77.0

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD   93 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~   93 (216)
                      .++|.+++|+|+|+.||....+                        .+..|.+||++ ++.+..+.  ...+..+.|+|+
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~------------------------~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~  111 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGS------------------------MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPD  111 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEcc------------------------CCcccEEEcCc-ccEeEeec--CCCceEEEECCC
Confidence            4579999999999988765421                        23345555554 44444443  456789999999


Q ss_pred             CcEEEEecC---CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           94 GKTICTGSD---NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        94 ~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      |+++++++.   .|.+.+||+++.+.+....                + ..+..++|+|+|++++++...
T Consensus       112 G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----------------~-~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen  112 GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----------------H-SDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCEEeeccc----------------c-CcEEEEEEcCCCCEEEEEEec
Confidence            999999874   4679999999888877764                3 347899999999999998754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=1.3e-15  Score=112.30  Aligned_cols=170  Identities=16%  Similarity=0.196  Sum_probs=128.8

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWM   66 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i   66 (216)
                      .|..+..++.| ..|..+.|-|..-+|++++..|.++--|+.+|+.+..+....+..                .+|+|.+
T Consensus       199 ~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl  277 (545)
T KOG1272|consen  199 NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL  277 (545)
T ss_pred             CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence            35566667665 578899999988899999999999999999998887765433322                8999999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      |.....+++..+..|.++|.++++.++|++++|++.|+.++|||++....+.++..                ..+...++
T Consensus       278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----------------p~~a~~ls  341 (545)
T KOG1272|consen  278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----------------PHPASNLS  341 (545)
T ss_pred             cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----------------CCCccccc
Confidence            99999999999999999999999999999999999999999999998887766652                34455566


Q ss_pred             eCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCC
Q 043942          147 WPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDG  189 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~  189 (216)
                      +|..|...++-+..=.+                 ....++|.++.|+|-...|-.|..-|
T Consensus       342 ~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  342 LSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             cccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            66554332222221111                 12235899999999766655554443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=6.2e-14  Score=100.81  Aligned_cols=147  Identities=16%  Similarity=0.317  Sum_probs=104.3

Q ss_pred             eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942           11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDF   90 (216)
Q Consensus        11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~   90 (216)
                      .+| .+|++++|++||..+++++.                         .+..|.+||..++..+.....-.+.++-+.|
T Consensus       193 pgh-~pVtsmqwn~dgt~l~tAS~-------------------------gsssi~iWdpdtg~~~pL~~~glgg~slLkw  246 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDGTILVTASF-------------------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKW  246 (445)
T ss_pred             CCC-ceeeEEEEcCCCCEEeeccc-------------------------CcceEEEEcCCCCCcccccccCCCceeeEEE
Confidence            355 68999999999999999986                         3455666666666554433334466889999


Q ss_pred             cCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe-cccCeE------
Q 043942           91 TTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG-CVDGKV------  163 (216)
Q Consensus        91 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~i------  163 (216)
                      +||+.+|..+.-|+..++|+............               ..+.|...+|+|+|++|+.. +..-.+      
T Consensus       247 SPdgd~lfaAt~davfrlw~e~q~wt~erw~l---------------gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~  311 (445)
T KOG2139|consen  247 SPDGDVLFAATCDAVFRLWQENQSWTKERWIL---------------GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFD  311 (445)
T ss_pred             cCCCCEEEEecccceeeeehhcccceecceec---------------cCCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence            99999999999999999996554332222222               44588999999999876543 333333      


Q ss_pred             ------------------------------EeeeCCEEEEEEecCCCeEEEEeCCC--------cEEEEEccc
Q 043942          164 ------------------------------DGHIDAIQSLSVSAIRESLVSVSVDG--------TARVFEIAE  198 (216)
Q Consensus       164 ------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~--------~v~vw~~~~  198 (216)
                                                    .-..+.+.+++|+|.|++|++.=..+        .|.+||.+.
T Consensus       312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence                                          12246789999999999999764332        355677654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.62  E-value=3.9e-15  Score=107.85  Aligned_cols=125  Identities=17%  Similarity=0.209  Sum_probs=101.2

Q ss_pred             eeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cE
Q 043942           76 NMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KY  153 (216)
Q Consensus        76 ~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  153 (216)
                      ..+.+|.++|..++|+| +...||+||.|.+|.+|++-.+.....+..        ......+|...|.-+.|+|.. +.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte--------pvv~L~gH~rrVg~V~wHPtA~NV  146 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE--------PVVELYGHQRRVGLVQWHPTAPNV  146 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc--------ceEEEeecceeEEEEeecccchhh
Confidence            34678999999999999 667899999999999999876543332221        112233499999999999964 67


Q ss_pred             EEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942          154 LVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSY  208 (216)
Q Consensus       154 l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~  208 (216)
                      |++++.|..+             ..|..-|++++|+.||.+|++.+.|++|||||.++++.+.+-..|
T Consensus       147 Llsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h  214 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH  214 (472)
T ss_pred             HhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence            8888888887             458899999999999999999999999999999998877665443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.62  E-value=7.7e-15  Score=112.10  Aligned_cols=150  Identities=19%  Similarity=0.193  Sum_probs=113.8

Q ss_pred             EEEEcc---CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942           19 SLAFST---DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK   95 (216)
Q Consensus        19 ~~~~s~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~   95 (216)
                      +..|++   ....|+.+..||.|.++|.......                   + ..+.+.....|.+.|..+.|.|-..
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------------------~-ee~~lk~~~aH~nAifDl~wapge~  113 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------------------L-EERQLKKPLAHKNAIFDLKWAPGES  113 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcc-------------------h-hhhhhcccccccceeEeeccCCCce
Confidence            356665   2357888998888888886543210                   1 1223455678999999999999777


Q ss_pred             EEEEecCCCeEEEEeCCCCceeEE--eecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccCeE---------
Q 043942           96 TICTGSDNATLSIWNPKGGENFHA--IRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDGKV---------  163 (216)
Q Consensus        96 ~l~t~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~i---------  163 (216)
                      .|++++.|.++++||++..+....  +.+               |...+.+++|.|.. ..|++|+.||.+         
T Consensus       114 ~lVsasGDsT~r~Wdvk~s~l~G~~~~~G---------------H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~  178 (720)
T KOG0321|consen  114 LLVSASGDSTIRPWDVKTSRLVGGRLNLG---------------HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG  178 (720)
T ss_pred             eEEEccCCceeeeeeeccceeecceeecc---------------cccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence            899999999999999998877654  444               99999999999954 578899999988         


Q ss_pred             --------------------------------EeeeCCEEE---EEEecCCCeEEEEeC-CCcEEEEEccccccee
Q 043942          164 --------------------------------DGHIDAIQS---LSVSAIRESLVSVSV-DGTARVFEIAEFRRAT  203 (216)
Q Consensus       164 --------------------------------~~~~~~i~~---~~~~~~~~~l~s~~~-d~~v~vw~~~~~~~~~  203 (216)
                                                      ..+...|.+   +.+..|...||++|. |+.|+|||++......
T Consensus       179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             hhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence                                            233344444   556688889999887 9999999999765443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=4.8e-13  Score=103.92  Aligned_cols=180  Identities=11%  Similarity=0.068  Sum_probs=119.6

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcC---CCcEEEEECCCCceEEEE--eCCCCcc----------------cCc
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGF---HGLVQNRDTSSRNLQCTV--EGPRGGI----------------EDS   62 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~--~~~~~~~----------------~~~   62 (216)
                      |...+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.....  .+.....                ...
T Consensus       191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~  270 (435)
T PRK05137        191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT  270 (435)
T ss_pred             CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence            4455667778889999999999999888764   468999999887653221  1111000                234


Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-C--CeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-N--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      .|++||+.++.. ..+..+........|+|||+.++..+. +  ..|+++|+..+.... +..               ..
T Consensus       271 ~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~---------------~~  333 (435)
T PRK05137        271 DIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF---------------GG  333 (435)
T ss_pred             eEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec---------------CC
Confidence            577888887655 445556666778999999998887663 3  368888987655433 322               33


Q ss_pred             cCeEEEEeCCCCcEEEEecccC---eE------------EeeeCCEEEEEEecCCCeEEEEeCC------CcEEEEEccc
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDG---KV------------DGHIDAIQSLSVSAIRESLVSVSVD------GTARVFEIAE  198 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~---~i------------~~~~~~i~~~~~~~~~~~l~s~~~d------~~v~vw~~~~  198 (216)
                      ..+....|+|+|+.++....++   .+            ......+....|+|||+.|+..+.+      ..+++.++..
T Consensus       334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            4456678999999988765432   22            1112245678999999988765542      2577778765


Q ss_pred             cc
Q 043942          199 FR  200 (216)
Q Consensus       199 ~~  200 (216)
                      ..
T Consensus       414 ~~  415 (435)
T PRK05137        414 RN  415 (435)
T ss_pred             Cc
Confidence            43

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=6.7e-14  Score=106.03  Aligned_cols=193  Identities=18%  Similarity=0.257  Sum_probs=142.2

Q ss_pred             eEEeeccccceEEEEEccCCCE-EEEEcCCCcEEEEECCCCceEEEE----------------------------eCCCC
Q 043942            7 ASEILGHKDSFSSLAFSTDGQL-LASGGFHGLVQNRDTSSRNLQCTV----------------------------EGPRG   57 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~----------------------------~~~~~   57 (216)
                      ++.| .|...-+.+..+|||+| +|||-+...|++||+....+...-                            +.|..
T Consensus        45 iQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   45 IQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             HHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            3344 36777889999999997 557778899999999865322111                            11110


Q ss_pred             cc---------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEe
Q 043942           58 GI---------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN  110 (216)
Q Consensus        58 ~~---------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd  110 (216)
                      ..                           ....|+-++++.|+.+..+....+.++++..++...+|++|+.+|.|.+||
T Consensus       124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD  203 (703)
T ss_pred             cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence            00                           667788889999998888887788999999999999999999999999999


Q ss_pred             CCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEE
Q 043942          111 PKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSV  175 (216)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~  175 (216)
                      .+....+..+.......+..    .......|+++.|+.+|-.+++|..+|.+               .....+|..+.|
T Consensus       204 pR~ksrv~~l~~~~~v~s~p----g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~  279 (703)
T KOG2321|consen  204 PRDKSRVGTLDAASSVNSHP----GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW  279 (703)
T ss_pred             chhhhhheeeecccccCCCc----cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence            99888777776533211100    00123459999999999999999999987               344568999999


Q ss_pred             ecC--CCeEEEEeCCCcEEEEEcccccceeec
Q 043942          176 SAI--RESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       176 ~~~--~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      .+.  ++.++++ ....++|||-.+++....+
T Consensus       280 ~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asi  310 (703)
T KOG2321|consen  280 QDTDQQNKVVSM-DKRILKIWDECTGKPMASI  310 (703)
T ss_pred             cccCCCceEEec-chHHhhhcccccCCceeec
Confidence            876  3455555 3567899999988876543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=1.3e-12  Score=92.50  Aligned_cols=180  Identities=16%  Similarity=0.190  Sum_probs=126.8

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------cCcEEEEEECCCc
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------EDSTVWMWNADRG   72 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------~~~~v~i~d~~~~   72 (216)
                      ...+++|+.|...++.|..+| .+||+.+.-+....-+....+.                       ..+.|.|||=...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            345699999998888888655 7999987643322222111111                       6788999997777


Q ss_pred             ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC-CCceeEEeecccc--------------------------
Q 043942           73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK-GGENFHAIRRSSL--------------------------  125 (216)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~~~~~~~~~~--------------------------  125 (216)
                      +++.++. ...+|.++.+.++  .|++. ..+.|+||.+. +.+.++.+.....                          
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            7877776 5678999999865  34433 35678888877 4444444433110                          


Q ss_pred             ---ccc---ccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeE
Q 043942          126 ---EFS---LNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESL  182 (216)
Q Consensus       126 ---~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l  182 (216)
                         ...   .+.-.....|...|.+++.+.+|..+|+++..|++                 -.....|.+++|||++.+|
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L  241 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL  241 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence               000   00113334589999999999999999999999998                 1123579999999999999


Q ss_pred             EEEeCCCcEEEEEccccc
Q 043942          183 VSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       183 ~s~~~d~~v~vw~~~~~~  200 (216)
                      +++|+.|+++|+.++...
T Consensus       242 avsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  242 AVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEcCCCeEEEEEeecCC
Confidence            999999999999998744

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.59  E-value=1.6e-14  Score=102.78  Aligned_cols=181  Identities=17%  Similarity=0.188  Sum_probs=119.4

Q ss_pred             EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe-----------CCCC---cc--cCcEEEEEECCCcceeeeeeccC
Q 043942           19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE-----------GPRG---GI--EDSTVWMWNADRGAYLNMFSGHG   82 (216)
Q Consensus        19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----------~~~~---~~--~~~~v~i~d~~~~~~~~~~~~~~   82 (216)
                      -.+|||+|+++|+++.- .+.|-|.++.+..+.+.           ....   +.  .++.|.+|++...+-.-++....
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            46899999999999855 67777877764332111           1110   11  78899999999887777777777


Q ss_pred             CCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecc----cccccccce--EEE--------------------
Q 043942           83 SGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRS----SLEFSLNYW--MIC--------------------  135 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~~~~~--~~~--------------------  135 (216)
                      ..+..+.|+|||+.+ .+...|-.|.+|.+.+.+....-...    ...+.+.+.  .+.                    
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll  171 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILL  171 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHH
Confidence            889999999999655 56668999999999876543322110    001111100  000                    


Q ss_pred             ---eeeecCeEEEEeCCCCcEEEEecc--cCeE--EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          136 ---TSLYDGVTCLSWPGTSKYLVTGCV--DGKV--DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       136 ---~~~~~~v~~~~~~~~~~~l~~~~~--~~~i--~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                         ....-..+.+.|+|||+.+++=..  +-.+  ....-.+..++|+|.+++|+.|+.|+++|+-+--+.+
T Consensus       172 ~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk  243 (447)
T KOG4497|consen  172 KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK  243 (447)
T ss_pred             HhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence               002334567778888887776322  2222  3334578899999999999999999999986644433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.58  E-value=2.1e-12  Score=97.02  Aligned_cols=174  Identities=14%  Similarity=0.209  Sum_probs=112.5

Q ss_pred             cceEEEEEccCCCEEEEEcC-CCcEEEEECCC-C---ceEEEEeCCCCcc----------------cCcEEEEEECCCcc
Q 043942           15 DSFSSLAFSTDGQLLASGGF-HGLVQNRDTSS-R---NLQCTVEGPRGGI----------------EDSTVWMWNADRGA   73 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~-~---~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~   73 (216)
                      +....++++|++++|++++. ++.|.+|++.+ +   +....+.....+.                .++.|.+||+++..
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            35678999999998888764 78999999964 2   2222222211100                67899999997632


Q ss_pred             eeee-----ee-ccCCCeeEEEEcCCCcEEEEecC-CCeEEEEeCCC--Cce--eEEeecccccccccceEEEeeeecCe
Q 043942           74 YLNM-----FS-GHGSGLTCGDFTTDGKTICTGSD-NATLSIWNPKG--GEN--FHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        74 ~~~~-----~~-~~~~~v~~~~~~~~~~~l~t~~~-d~~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      .+..     .. ........++|+|++++++++.. ++.|.+||++.  ++.  ...+...+..  .       ......
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~--~-------~~~~~~  230 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD--F-------SDTRWA  230 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc--C-------CCCccc
Confidence            2210     11 12234678999999999988775 89999999974  322  2222210000  0       011223


Q ss_pred             EEEEeCCCCcEEEEecc-cCeE--------------Eee---eCCEEEEEEecCCCeEEEEeC-CCcEEEEEcc
Q 043942          143 TCLSWPGTSKYLVTGCV-DGKV--------------DGH---IDAIQSLSVSAIRESLVSVSV-DGTARVFEIA  197 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~-~~~i--------------~~~---~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~  197 (216)
                      ..+.++|++++++++.. ++.+              ..+   ......+.++|+|++|+++.. +++|.+|++.
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            46889999999998865 4444              111   113457899999999987775 8999999885

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=3.2e-13  Score=104.57  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=102.7

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCC
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGS   83 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~   83 (216)
                      |+..+.+..+...+.+.+|+|||+.|+..+.+.                       ....|++||+.+++... +....+
T Consensus       185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~-----------------------~~~~I~~~dl~~g~~~~-l~~~~g  240 (427)
T PRK02889        185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFES-----------------------KKPVVYVHDLATGRRRV-VANFKG  240 (427)
T ss_pred             CCCceEeccCCCCcccceEcCCCCEEEEEEccC-----------------------CCcEEEEEECCCCCEEE-eecCCC
Confidence            444555667778899999999999998877432                       23446666766665432 332344


Q ss_pred             CeeEEEEcCCCcEEE-EecCCCeEEEEe--CCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           84 GLTCGDFTTDGKTIC-TGSDNATLSIWN--PKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~-t~~~d~~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      .....+|+|||+.|+ +.+.++...+|.  +..+. ...+..               +........|+|||+.++..+..
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~---------------~~~~~~~~~wSpDG~~l~f~s~~  304 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ---------------SSGIDTEPFFSPDGRSIYFTSDR  304 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC---------------CCCCCcCeEEcCCCCEEEEEecC
Confidence            566899999999886 566777755554  44443 333332               33345667899999987765542


Q ss_pred             -Ce--E-------------EeeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEcccccc
Q 043942          161 -GK--V-------------DGHIDAIQSLSVSAIRESLVSVSVDG---TARVFEIAEFRR  201 (216)
Q Consensus       161 -~~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~~~~~~  201 (216)
                       +.  +             ...........|+|+|++|+..+.++   .|.+||+.+++.
T Consensus       305 ~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        305 GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence             32  2             11112234578999999998776554   699999887653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.57  E-value=2e-13  Score=106.52  Aligned_cols=171  Identities=19%  Similarity=0.223  Sum_probs=122.9

Q ss_pred             cccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCce--EEEEe----CCCCcc------------------cCcEEEEE
Q 043942           13 HKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNL--QCTVE----GPRGGI------------------EDSTVWMW   67 (216)
Q Consensus        13 h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~----~~~~~~------------------~~~~v~i~   67 (216)
                      -...|.|++|+| +..+++.|..+|.|.+||+..+..  ...+.    .|..++                  .||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            457899999999 568899999999999999987654  22211    111111                  78889999


Q ss_pred             ECCCcce---------------------------------------------------------------eeeeeccCCC
Q 043942           68 NADRGAY---------------------------------------------------------------LNMFSGHGSG   84 (216)
Q Consensus        68 d~~~~~~---------------------------------------------------------------~~~~~~~~~~   84 (216)
                      +++.-..                                                               ...+..|.+.
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            8642100                                                               1122346678


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCC-CCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccCe
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPK-GGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDGK  162 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~  162 (216)
                      |.++.++|-+..++..+.|.++++|... ...++..+..               +.+.+++++|||.. ..|+++..+|.
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~---------------~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS---------------SPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh---------------ccceeeeeEEcCcCceEEEEEcCCCc
Confidence            8888888866555444448899999877 5555555554               66779999999966 46777788998


Q ss_pred             E----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          163 V----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       163 i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      +                ..+......+.|+++|+.|+.|...|++++|++..
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            8                22245566778888999999999999999999964

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=4.4e-13  Score=96.52  Aligned_cols=165  Identities=18%  Similarity=0.300  Sum_probs=119.3

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-------------cc----cCcEEEEEECCC----cc
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-------------GI----EDSTVWMWNADR----GA   73 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-------------~~----~~~~v~i~d~~~----~~   73 (216)
                      -.+..++|++.-..+|++..|-.|++||-.+ +....++....             ..    ..+-|++|....    ++
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r  177 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR  177 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence            3577899999767799999999999999776 22222221111             00    677789997642    12


Q ss_pred             e----------eeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           74 Y----------LNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        74 ~----------~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      .          +....+| ..|+++.|++||..+++++ .|..|.+||..++..+.....               ..+.+
T Consensus       178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---------------glgg~  241 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK---------------GLGGF  241 (445)
T ss_pred             ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---------------CCCce
Confidence            1          1122344 5799999999999999988 678899999999887665543               56778


Q ss_pred             EEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      .-+.|+||+.+|+++.-|+..              ....+.|...+|+|+|++|+... .|.-++|.+.
T Consensus       242 slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~  309 (445)
T KOG2139|consen  242 SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLT  309 (445)
T ss_pred             eeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEEEe
Confidence            899999999999999999876              22345899999999998765433 2344555554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=8.7e-14  Score=101.50  Aligned_cols=150  Identities=19%  Similarity=0.222  Sum_probs=106.1

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------cCc
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------EDS   62 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------~~~   62 (216)
                      .+.....|...|.++.|+|||+.|++-+.| ..+||+.+++..++.........                       ..+
T Consensus       178 t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~  256 (398)
T KOG0771|consen  178 TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGG  256 (398)
T ss_pred             hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCC
Confidence            334455799999999999999999999999 99999999985554443211110                       223


Q ss_pred             EEEEEECCCcc-----eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           63 TVWMWNADRGA-----YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        63 ~v~i~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      .|+.||+....     +..+.......|++++.+++|++++.|+.||.|.+++..+.+.++-.+.              .
T Consensus       257 ~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~--------------a  322 (398)
T KOG0771|consen  257 GVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE--------------A  322 (398)
T ss_pred             ceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh--------------h
Confidence            33333332111     1111111234699999999999999999999999999998888776654              2


Q ss_pred             eecCeEEEEeCCCCcEEEEecccCeEEeeeCCEEEEEE
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSV  175 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~  175 (216)
                      |..-|+.+.|+|+.+++++.+.+     ++..|+.++.
T Consensus       323 H~~~VT~ltF~Pdsr~~~svSs~-----~~~~v~~l~v  355 (398)
T KOG0771|consen  323 HLGFVTGLTFSPDSRYLASVSSD-----NEAAVTKLAV  355 (398)
T ss_pred             heeeeeeEEEcCCcCcccccccC-----CceeEEEEee
Confidence            88899999999999988876544     3444544444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.6e-12  Score=100.98  Aligned_cols=178  Identities=17%  Similarity=0.135  Sum_probs=116.0

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCC---CcEEEEECCCCceEEEE--eCCCCcc----------------cCc
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFH---GLVQNRDTSSRNLQCTV--EGPRGGI----------------EDS   62 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~--~~~~~~~----------------~~~   62 (216)
                      |...+.+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.....  .+.....                .+.
T Consensus       193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~  272 (433)
T PRK04922        193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNP  272 (433)
T ss_pred             CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence            44455666777889999999999999987743   46999999887653321  1111111                234


Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-CCe--EEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NAT--LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      .|++||+.+++.. .+..+.......+|+|||+.++..+. ++.  |+++|+.+++... +..               ..
T Consensus       273 ~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~---------------~g  335 (433)
T PRK04922        273 EIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF---------------QG  335 (433)
T ss_pred             eEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec---------------CC
Confidence            6899999877643 45555555678899999998887663 444  7777777665432 221               22


Q ss_pred             cCeEEEEeCCCCcEEEEecccC---eE------------EeeeCCEEEEEEecCCCeEEEEeCC---CcEEEEEccc
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDG---KV------------DGHIDAIQSLSVSAIRESLVSVSVD---GTARVFEIAE  198 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~---~i------------~~~~~~i~~~~~~~~~~~l~s~~~d---~~v~vw~~~~  198 (216)
                      ......+|+|+|++++..+.++   .+            ..+........|+|||++++..+.+   +.+.++++..
T Consensus       336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            3344689999999988764432   22            1112234567999999988876653   4577777754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=4.4e-13  Score=105.82  Aligned_cols=155  Identities=17%  Similarity=0.233  Sum_probs=124.6

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT   91 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~   91 (216)
                      .|...++|.++||+++++|++..||.|.+|.--..+                      ........+.-|...|++++|+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~----------------------~~~~t~t~lHWH~~~V~~L~fS  260 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS----------------------DDSETCTLLHWHHDEVNSLSFS  260 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccc----------------------cccccceEEEecccccceeEEe
Confidence            477778999999999999999999999999632210                      0011223455688899999999


Q ss_pred             CCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------
Q 043942           92 TDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------  163 (216)
Q Consensus        92 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------  163 (216)
                      ++|.+|++|+..+.+-+|.+.+++ .+-++.               ..++|..+.++||+.+.+....|..+        
T Consensus       261 ~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR---------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  261 SDGAYLLSGGREGVLVLWQLETGK-KQFLPR---------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             cCCceEeecccceEEEEEeecCCC-cccccc---------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            999999999999999999999988 444444               67899999999999999998889887        


Q ss_pred             -----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          164 -----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       164 -----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                                       ....+-.+.++++|.-+.++-.+..+.|.+||+-+.+.+.+
T Consensus       325 ~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~  382 (792)
T KOG1963|consen  325 EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK  382 (792)
T ss_pred             hhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee
Confidence                             11245568889999777888899999999999988766543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=7.4e-14  Score=101.63  Aligned_cols=161  Identities=14%  Similarity=0.129  Sum_probs=126.7

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeee-ccCCCe
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFS-GHGSGL   85 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~v   85 (216)
                      .+.+.+|.+-|+++.|+.++++|++|+.|..+++|++...-.                    -++.+++.... .|...|
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--------------------~k~~KPI~~~~~~H~SNI  108 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--------------------RKTPKPIGVMEHPHRSNI  108 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh--------------------hcCCCCceeccCccccce
Confidence            345678999999999999999999999999998888753211                    01234444433 355789


Q ss_pred             eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942           86 TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--  163 (216)
Q Consensus        86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--  163 (216)
                      .|++|....+.+.+|..+++|..-|+.+.+.+..+....             ..+.|+.+..+|..+.+++.+.++.+  
T Consensus       109 F~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~-------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~  175 (609)
T KOG4227|consen  109 FSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENN-------------NRGDVYHMDQHPTDNTLIVVTRAKLVSF  175 (609)
T ss_pred             EEEEEccCCeeEecCCCcceeEeeecccceeeeeecccC-------------cccceeecccCCCCceEEEEecCceEEE
Confidence            999999999999999999999999999998888776311             34589999999999999999999988  


Q ss_pred             ---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccccc
Q 043942          164 ---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       164 ---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~  200 (216)
                                     .........+.|+|.. .+|++.+..+-+-+||.+...
T Consensus       176 ~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  176 IDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             EeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence                           1223456778888865 567788888899999987644

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.9e-12  Score=88.71  Aligned_cols=175  Identities=16%  Similarity=0.133  Sum_probs=130.4

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCC----------ceEEEEeCCCCcc-------------cCcEEEEEECCC
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR----------NLQCTVEGPRGGI-------------EDSTVWMWNADR   71 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----------~~~~~~~~~~~~~-------------~~~~v~i~d~~~   71 (216)
                      ..|..-+|+|.+++|+.|..+|.|.+..+.+.          ..+-..+.|+.++             .||.|+=|..+.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E   90 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNE   90 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehh
Confidence            35677799999999999999999999988642          2333445666665             789999888653


Q ss_pred             cce------eeee--ecc-----CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           72 GAY------LNMF--SGH-----GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        72 ~~~------~~~~--~~~-----~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      ...      +...  .-|     --.|+++...|..+-+++++.|+.++.||+++|+...++.+               |
T Consensus        91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG---------------H  155 (325)
T KOG0649|consen   91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG---------------H  155 (325)
T ss_pred             hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC---------------C
Confidence            211      1111  111     23588999999888888888999999999999999999998               9


Q ss_pred             ecCeEEEEeCCCCcEEEEecccCeE-----------------------Eee-eCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVDGKV-----------------------DGH-IDAIQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~~~i-----------------------~~~-~~~i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                      .+.+-++.-......+++|++||.+                       ..| ..+|-+++-  +..+|+.|+ ...+.+|
T Consensus       156 tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslw  232 (325)
T KOG0649|consen  156 TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLW  232 (325)
T ss_pred             cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEE
Confidence            9999999986666778999999998                       111 234555554  556777554 6789999


Q ss_pred             EcccccceeecCC
Q 043942          195 EIAEFRRATKAPS  207 (216)
Q Consensus       195 ~~~~~~~~~~~~~  207 (216)
                      ++++.++...+|.
T Consensus       233 hLrsse~t~vfpi  245 (325)
T KOG0649|consen  233 HLRSSESTCVFPI  245 (325)
T ss_pred             eccCCCceEEEec
Confidence            9999887665543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.52  E-value=1.2e-12  Score=106.94  Aligned_cols=175  Identities=13%  Similarity=0.111  Sum_probs=118.3

Q ss_pred             CCceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH   81 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~   81 (216)
                      .|.++..+..|...|..++.++.. .+|+|||.||+|++||......-                   ..+.+...++...
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------------------~~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------------------GGSARSELTYSPE 1097 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------------------cceeeeeEEEecc
Confidence            578899999999999999998754 99999999999999998653311                   0011222233335


Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE-EeCC-CCc-EEEEec
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL-SWPG-TSK-YLVTGC  158 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~-~l~~~~  158 (216)
                      ...+.++...+.+..+|.++.||.|.+.+++-....+.........+.       ...+.+.++ ++.. .+. .++.+.
T Consensus      1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~-------~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL-------KKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred             CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccc-------cCCCceEEeecccccccceeEEEEE
Confidence            677899999999999999999999999998852111100000000000       022223332 3322 233 555565


Q ss_pred             ccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          159 VDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       159 ~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      ..+.+                ....+.|++++.+|.+++++.|+..|.+.+||++=+.++.
T Consensus      1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred             eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceee
Confidence            55555                3445789999999999999999999999999998655443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=7.9e-14  Score=104.86  Aligned_cols=104  Identities=21%  Similarity=0.317  Sum_probs=85.1

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG   84 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~   84 (216)
                      .++..+.--.+.|+..+|+|||++||+.+.||.+||+|..+.+                          .+..++.--+.
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--------------------------Llg~mkSYFGG  334 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--------------------------LLGVMKSYFGG  334 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH--------------------------HHHHHHhhccc
Confidence            3445555456689999999999999999988888887765443                          23334444577


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ..|++|+|||++|++|+.|.-|.||.+...+.+..-..               |...|..++|+|
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG---------------HkSWVs~VaFDp  384 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG---------------HKSWVSVVAFDP  384 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc---------------cccceeeEeecc
Confidence            99999999999999999999999999999988877766               999999999986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.52  E-value=1.2e-11  Score=92.83  Aligned_cols=183  Identities=12%  Similarity=0.105  Sum_probs=114.8

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEc-CCCcEEEEECCC-Cce--EEEEeCCCCcc----------------cCcEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSS-RNL--QCTVEGPRGGI----------------EDSTVW   65 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~-~~~--~~~~~~~~~~~----------------~~~~v~   65 (216)
                      .++++. +.+....++++|++++|++++ .++.|.+|++.. +..  .........+.                .++.|.
T Consensus        27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~  105 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVS  105 (330)
T ss_pred             eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence            445554 345677899999999887654 578899999873 332  22222111111                578899


Q ss_pred             EEECCCc----ceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           66 MWNADRG----AYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        66 i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      +|++++.    +.+..+. +......++++|+++++++++ .++.|.+||+.+...+.........         .....
T Consensus       106 v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~---------~~~g~  175 (330)
T PRK11028        106 VSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT---------TVEGA  175 (330)
T ss_pred             EEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee---------cCCCC
Confidence            9998742    2222222 223467889999999886554 6799999999863322110000000         00223


Q ss_pred             CeEEEEeCCCCcEEEEecc-cCeE-----Ee-------------------eeCCEEEEEEecCCCeEEEEeC-CCcEEEE
Q 043942          141 GVTCLSWPGTSKYLVTGCV-DGKV-----DG-------------------HIDAIQSLSVSAIRESLVSVSV-DGTARVF  194 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~-~~~i-----~~-------------------~~~~i~~~~~~~~~~~l~s~~~-d~~v~vw  194 (216)
                      ....+.|+|++++++++.. ++.+     ..                   +......+.++|++++++++.. ++.|.+|
T Consensus       176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~  255 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVF  255 (330)
T ss_pred             CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEE
Confidence            4578899999999988765 5555     10                   0011225789999999988754 7899999


Q ss_pred             Ecccc
Q 043942          195 EIAEF  199 (216)
Q Consensus       195 ~~~~~  199 (216)
                      ++...
T Consensus       256 ~i~~~  260 (330)
T PRK11028        256 SVSED  260 (330)
T ss_pred             EEeCC
Confidence            98653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.51  E-value=4.7e-13  Score=107.41  Aligned_cols=167  Identities=14%  Similarity=0.124  Sum_probs=134.2

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------cCcEEEEEECCCccee
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------EDSTVWMWNADRGAYL   75 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------~~~~v~i~d~~~~~~~   75 (216)
                      .|....+..+...++.+..+..+-+||...+.....+.....+.                    .-+.|.+|+....+.-
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p  168 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP  168 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence            34444455566788888889999999998887666665554433                    6677899998743333


Q ss_pred             eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeE-EeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFH-AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      ..+.+|.+.+..+.|+.||+++++.|+|+++++|++++.+... ..-               +|...+..++|.|+  .+
T Consensus       169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f---------------gHsaRvw~~~~~~n--~i  231 (967)
T KOG0974|consen  169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF---------------GHSARVWACCFLPN--RI  231 (967)
T ss_pred             ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc---------------cccceeEEEEeccc--ee
Confidence            3688999999999999999999999999999999999887655 222               29999999999998  89


Q ss_pred             EEecccCeE-------------Eee-eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          155 VTGCVDGKV-------------DGH-IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       155 ~~~~~~~~i-------------~~~-~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      ++++.|-..             .+| ...|..++..++...++|++.|+.+++|++...
T Consensus       232 ~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  232 ITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            999998876             233 357899999999999999999999999998753

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=1.2e-12  Score=92.34  Aligned_cols=157  Identities=11%  Similarity=0.143  Sum_probs=109.9

Q ss_pred             eeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCceE------EEEe--------C--CCCcc--------
Q 043942            6 WASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRNLQ------CTVE--------G--PRGGI--------   59 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~------~~~~--------~--~~~~~--------   59 (216)
                      ...++......|++++|.|  -|-.||+++.||++|||+..+.-.+      .+++        .  +..++        
T Consensus       104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~  183 (361)
T KOG2445|consen  104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH  183 (361)
T ss_pred             EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence            3456777888999999999  4678999999999999987654221      2222        0  00011        


Q ss_pred             -------------cCcEEEEEECCCc----ceeeeeeccCCCeeEEEEcCC----CcEEEEecCCCeEEEEeCCCCceeE
Q 043942           60 -------------EDSTVWMWNADRG----AYLNMFSGHGSGLTCGDFTTD----GKTICTGSDNATLSIWNPKGGENFH  118 (216)
Q Consensus        60 -------------~~~~v~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~----~~~l~t~~~d~~i~~wd~~~~~~~~  118 (216)
                                   .-+.++||....+    ..+.++.+|..+|++++|.|+    -..||+++.|| |++|.++.....-
T Consensus       184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i  262 (361)
T KOG2445|consen  184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI  262 (361)
T ss_pred             CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh
Confidence                         3347888876543    345667899999999999995    25789999999 9999998432111


Q ss_pred             ---Eeec--ccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942          119 ---AIRR--SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       119 ---~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                         ....  ..............+|+++|..+.|+-.|..|.+.+.||.+
T Consensus       263 ~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  263 EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence               0000  01112222333345699999999999999999999999998

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=7.1e-13  Score=106.99  Aligned_cols=170  Identities=12%  Similarity=0.180  Sum_probs=126.2

Q ss_pred             EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEEECCCcc---eeee
Q 043942           19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMWNADRGA---YLNM   77 (216)
Q Consensus        19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~d~~~~~---~~~~   77 (216)
                      -+.|.....+|.+++.-..|+|||.........+.......                  .||.|++||.+...   .+..
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence            45777765567766668899999999887777665433322                  89999999998543   4667


Q ss_pred             eeccCCC--eeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee-ecCeEEEEeCCCCcE
Q 043942           78 FSGHGSG--LTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL-YDGVTCLSWPGTSKY  153 (216)
Q Consensus        78 ~~~~~~~--v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  153 (216)
                      .+.|+..  |..+.+.+.|- .|++|+.||.|++||++.......+....           .-. .+..+++..++....
T Consensus      1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~-----------~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA-----------HWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred             ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee-----------ccccCccceeeeeccCCCe
Confidence            7888877  99999988665 49999999999999999742221111100           001 224899999999999


Q ss_pred             EEEecccCeE--------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          154 LVTGCVDGKV--------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       154 l~~~~~~~~i--------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +++|+. +.+                    ....+.+.+++|+|..-++|+|+.|..|.||.-...+
T Consensus      1319 iAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            999987 544                    1223567999999999999999999999999876543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.46  E-value=1.3e-12  Score=90.48  Aligned_cols=135  Identities=15%  Similarity=0.223  Sum_probs=100.1

Q ss_pred             ccceEEEEEcc-CCC--EEEEEcCCCcEEEEECCCCceEEEEe----------CCCCcc----------------cCcEE
Q 043942           14 KDSFSSLAFST-DGQ--LLASGGFHGLVQNRDTSSRNLQCTVE----------GPRGGI----------------EDSTV   64 (216)
Q Consensus        14 ~~~v~~~~~s~-~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~----------~~~~~~----------------~~~~v   64 (216)
                      .+.+.|..+.- ++.  +|+.|-.+|.|.+||+.++..+..+.          .|..++                .+..+
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence            35677776543 333  45667778999999999984433332          222222                45567


Q ss_pred             EEEECCC--ccee--eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           65 WMWNADR--GAYL--NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        65 ~i~d~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      ..|.++.  +...  ....-.+-.|..+...||++.+||++.|+.|++|..++..++..++.               |.+
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky---------------Hsa  294 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY---------------HSA  294 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh---------------hhc
Confidence            7777763  2211  11222334588999999999999999999999999999999999988               999


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      .|++++|+|+...+++++.|+.|
T Consensus       295 gvn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  295 GVNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             ceeEEEeCCCCchhhhccCCceE
Confidence            99999999999999999999876

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=1.3e-10  Score=88.02  Aligned_cols=168  Identities=13%  Similarity=0.080  Sum_probs=102.8

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH   81 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~   81 (216)
                      ++.+.+.++......-..+.++|||+++++++.||.|.++|+.+++.                          +.+++. 
T Consensus        24 ~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--------------------------v~~i~~-   76 (369)
T PF02239_consen   24 ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV--------------------------VATIKV-   76 (369)
T ss_dssp             TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE--------------------------EEEEE--
T ss_pred             CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE--------------------------EEEEec-
Confidence            45677888876544445578999999999999777766666665554                          444442 


Q ss_pred             CCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE-Eecc
Q 043942           82 GSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV-TGCV  159 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~  159 (216)
                      .....++++++||+++++++ ..+.+.++|.++.+.++.++........        ....+..+..+|....++ +.-+
T Consensus        77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~--------~~~Rv~aIv~s~~~~~fVv~lkd  148 (369)
T PF02239_consen   77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG--------PESRVAAIVASPGRPEFVVNLKD  148 (369)
T ss_dssp             SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT--------S---EEEEEE-SSSSEEEEEETT
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc--------cCCCceeEEecCCCCEEEEEEcc
Confidence            33467899999999998776 7899999999999998888753211100        123455666666655333 3333


Q ss_pred             cCeE---------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcccccceee
Q 043942          160 DGKV---------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       160 ~~~i---------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~~~~~~  204 (216)
                      .+.+               ...........|+|+++|++.+ ..++.+-++|.++++....
T Consensus       149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence            3444               2233466788999999987664 4577899999888766543

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.45  E-value=1.8e-11  Score=93.16  Aligned_cols=160  Identities=16%  Similarity=0.102  Sum_probs=132.7

Q ss_pred             cCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----c-----------------------------------cCcEE
Q 043942           24 TDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----I-----------------------------------EDSTV   64 (216)
Q Consensus        24 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----~-----------------------------------~~~~v   64 (216)
                      |...++|....||.+++|+...++....+......    .                                   ..|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45679999999999999999988877666432211    1                                   78889


Q ss_pred             EEEECCCcceeeeee--ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           65 WMWNADRGAYLNMFS--GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      .+|+...++....+.  .|.+.|.++.++.+-..|.+++.|..+.+|+...++....+..               ....+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---------------~~~~~  147 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---------------QKPLV  147 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---------------CCCcc
Confidence            999999888877765  5889999999999999999999999999999999999988887               67788


Q ss_pred             EEEEeCCCCcEEEEecccCeE------------EeeeCCEEEEEEecC-----CCeEEEE-eCCCcEEEEEccc
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV------------DGHIDAIQSLSVSAI-----RESLVSV-SVDGTARVFEIAE  198 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i------------~~~~~~i~~~~~~~~-----~~~l~s~-~~d~~v~vw~~~~  198 (216)
                      ..++.+|||..+++++..-.+            .+|.++|.++.|..+     |.++.++ ..+.-+.+|-+..
T Consensus       148 ~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  148 SSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999999999988876554            799999999999887     6776654 4567778887765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.45  E-value=4.1e-11  Score=92.88  Aligned_cols=175  Identities=17%  Similarity=0.182  Sum_probs=112.8

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCC---CcEEEEECCCCceEEEEeCCC--Ccc----------------cCcE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFH---GLVQNRDTSSRNLQCTVEGPR--GGI----------------EDST   63 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~--~~~----------------~~~~   63 (216)
                      ...+.+..+...+...+|+|||++|+.+..+   ..|++||+.+++.........  ...                .+..
T Consensus       180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  259 (417)
T TIGR02800       180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD  259 (417)
T ss_pred             CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence            3345566677778999999999999987654   479999998875433221110  000                2345


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-CC--eEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      |++||+.++... .+..+........|+|+++.|+..+. ++  .|+++|+.+++... +..               ...
T Consensus       260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~---------------~~~  322 (417)
T TIGR02800       260 IYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF---------------RGG  322 (417)
T ss_pred             EEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---------------CCC
Confidence            888888876543 34445455567899999998876653 33  58888887665432 222               334


Q ss_pred             CeEEEEeCCCCcEEEEecccC---eE------------EeeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEc
Q 043942          141 GVTCLSWPGTSKYLVTGCVDG---KV------------DGHIDAIQSLSVSAIRESLVSVSVDG---TARVFEI  196 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~---~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~  196 (216)
                      ......|+|+|++++..+.++   .+            ...........|+|+|++|+..+.++   .+++.+.
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            566788999999888877654   33            01111234568999999888776653   3455554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=6.4e-12  Score=95.98  Aligned_cols=111  Identities=16%  Similarity=0.314  Sum_probs=91.3

Q ss_pred             eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc--
Q 043942           75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK--  152 (216)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--  152 (216)
                      -..+++|.+.|.++...|.|.+|++|+.||+|++|.+.+|.++..+.                ..+.|.+++|+|.+.  
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------------~d~~I~~vaw~P~~~~~  456 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------------FDSEIRSVAWNPLSDLC  456 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----------------ecceeEEEEecCCCCce
Confidence            34578999999999999999999999999999999999999999887                567899999999765  


Q ss_pred             EEEEecccCeE--------------------------------------------------EeeeCCEEEEEEecCCCeE
Q 043942          153 YLVTGCVDGKV--------------------------------------------------DGHIDAIQSLSVSAIRESL  182 (216)
Q Consensus       153 ~l~~~~~~~~i--------------------------------------------------~~~~~~i~~~~~~~~~~~l  182 (216)
                      .|+++-.+..+                                                  ..|...|.++.|+..|.||
T Consensus       457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl  536 (733)
T KOG0650|consen  457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL  536 (733)
T ss_pred             eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence            45555444422                                                  4567889999999999999


Q ss_pred             EEEeCC---CcEEEEEcccccc
Q 043942          183 VSVSVD---GTARVFEIAEFRR  201 (216)
Q Consensus       183 ~s~~~d---~~v~vw~~~~~~~  201 (216)
                      ++...+   ..|.|+++...+.
T Consensus       537 atV~~~~~~~~VliHQLSK~~s  558 (733)
T KOG0650|consen  537 ATVMPDSGNKSVLIHQLSKRKS  558 (733)
T ss_pred             EEeccCCCcceEEEEecccccc
Confidence            986553   5788999876443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=6e-13  Score=100.65  Aligned_cols=112  Identities=22%  Similarity=0.452  Sum_probs=97.7

Q ss_pred             eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC--CCc
Q 043942           75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG--TSK  152 (216)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~  152 (216)
                      ...+.+|.+.|++++|+.+|.+|++|++|-.+.|||....+.++.+..              +|...|.++.|-|  +.+
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--------------gHtaNIFsvKFvP~tnnr  108 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST--------------GHTANIFSVKFVPYTNNR  108 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec--------------ccccceeEEeeeccCCCe
Confidence            356889999999999999999999999999999999998888887764              3889999999988  456


Q ss_pred             EEEEecccCeE------------------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccccc
Q 043942          153 YLVTGCVDGKV------------------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       153 ~l~~~~~~~~i------------------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      .+++|..|..|                        ..|...|..++-.|++ +.+-++++||+++-+|+++..
T Consensus       109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence            88889888887                        4566788888889998 778899999999999998743

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.43  E-value=1.5e-13  Score=108.36  Aligned_cols=188  Identities=18%  Similarity=0.278  Sum_probs=134.5

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------cCcEEEEEEC
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------EDSTVWMWNA   69 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------~~~~v~i~d~   69 (216)
                      +++.+...+.||.+.|+.++.+.+..++|+++.|..|++|.+.++.++..+.+|.+.+            .||++++||.
T Consensus       220 et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~  299 (1113)
T KOG0644|consen  220 ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDA  299 (1113)
T ss_pred             cchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEeccc
Confidence            6778889999999999999999999999999999999999999999999999988665            7999999998


Q ss_pred             CCcceeee-----eeccCCCeeEEEEcCCCcEEEEecCCC-------------------------------------eEE
Q 043942           70 DRGAYLNM-----FSGHGSGLTCGDFTTDGKTICTGSDNA-------------------------------------TLS  107 (216)
Q Consensus        70 ~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~t~~~d~-------------------------------------~i~  107 (216)
                      +-...+..     +. ....+.++.|..++..++|++.|+                                     .++
T Consensus       300 r~~~~~y~prp~~~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~  378 (1113)
T KOG0644|consen  300 RLEPRIYVPRPLKFT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLC  378 (1113)
T ss_pred             cccccccCCCCCCcc-cccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEee
Confidence            71111100     00 112233333444444444444444                                     455


Q ss_pred             EEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccCeE---------------EeeeCCEE
Q 043942          108 IWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDGKV---------------DGHIDAIQ  171 (216)
Q Consensus       108 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~i---------------~~~~~~i~  171 (216)
                      +|++.+|...+....               |.+.+..+.++|-. ....+++.||..               .+ ...+.
T Consensus       379 vwnl~~g~l~H~l~g---------------hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~  442 (1113)
T KOG0644|consen  379 VWNLYTGQLLHNLMG---------------HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLV  442 (1113)
T ss_pred             eeecccchhhhhhcc---------------cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceee
Confidence            555555555544444               88889999999844 455567778866               33 45677


Q ss_pred             EEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          172 SLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       172 ~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                      ..+||++|+.++....-|.++|.....++.....+
T Consensus       443 d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak  477 (1113)
T KOG0644|consen  443 DGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAK  477 (1113)
T ss_pred             ccccCCCCceEecCCCCCceEEeccCCCccccccc
Confidence            88999999999888778999998876666554443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=5e-11  Score=92.72  Aligned_cols=157  Identities=17%  Similarity=0.152  Sum_probs=99.5

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCC
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGS   83 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~   83 (216)
                      |...+.+..+...+....|+|||+.|+..+.+.                       ....|++||+.+++... +....+
T Consensus       188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~-----------------------~~~~l~~~~l~~g~~~~-l~~~~g  243 (430)
T PRK00178        188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ-----------------------KRPRIFVQNLDTGRREQ-ITNFEG  243 (430)
T ss_pred             CCCceEEecCCCceeeeeECCCCCEEEEEEcCC-----------------------CCCEEEEEECCCCCEEE-ccCCCC
Confidence            334455666777889999999999988776432                       22346666666554322 222334


Q ss_pred             CeeEEEEcCCCcEEEE-ecCCC--eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-
Q 043942           84 GLTCGDFTTDGKTICT-GSDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-  159 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t-~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  159 (216)
                      .....+|+|||+.|+. .+.++  .|++||+.+++... +..               +........|+|+|+.++..+. 
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~---------------~~~~~~~~~~spDg~~i~f~s~~  307 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTN---------------HPAIDTEPFWGKDGRTLYFTSDR  307 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-ccc---------------CCCCcCCeEECCCCCEEEEEECC
Confidence            4557899999998874 44444  68888998776433 322               3334556789999987765543 


Q ss_pred             cCe--E-------------EeeeCCEEEEEEecCCCeEEEEeCC-C--cEEEEEccccc
Q 043942          160 DGK--V-------------DGHIDAIQSLSVSAIRESLVSVSVD-G--TARVFEIAEFR  200 (216)
Q Consensus       160 ~~~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~d-~--~v~vw~~~~~~  200 (216)
                      ++.  +             ...........|+|+|++|+..+.+ +  .|.+||+.+++
T Consensus       308 ~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        308 GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             CCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence            322  2             0011123456899999999876643 3  57888987654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=1e-11  Score=89.12  Aligned_cols=185  Identities=17%  Similarity=0.227  Sum_probs=125.3

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-----eEEEEeCCCCcc-----------------------------
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-----LQCTVEGPRGGI-----------------------------   59 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~-----------------------------   59 (216)
                      .+-|.++.|..+|.+||||..+|.|.++.-....     ....++.|...-                             
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4578999999999999999999999999765432     333444444422                             


Q ss_pred             -cCcEEEEEECCCcce-----------------------------------eee-eeccCCCeeEEEEcCCCcEEEEecC
Q 043942           60 -EDSTVWMWNADRGAY-----------------------------------LNM-FSGHGSGLTCGDFTTDGKTICTGSD  102 (216)
Q Consensus        60 -~~~~v~i~d~~~~~~-----------------------------------~~~-~~~~~~~v~~~~~~~~~~~l~t~~~  102 (216)
                       .|.+|++|.+.....                                   .+. -.+|+..|+++.++.|...++++ +
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence             899999998753211                                   000 12577889999999999998886 5


Q ss_pred             CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC-CcEEEEecccCeE------------------
Q 043942          103 NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKYLVTGCVDGKV------------------  163 (216)
Q Consensus       103 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~i------------------  163 (216)
                      |=.|.+|+++-......+-.-......       ....-|++..|+|. .+.++-++..|.|                  
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmE-------eLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANME-------ELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHH-------HHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            778999999854432222110000000       03345788888884 4667777888887                  


Q ss_pred             ------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc-cccceeecCC
Q 043942          164 ------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA-EFRRATKAPS  207 (216)
Q Consensus       164 ------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~-~~~~~~~~~~  207 (216)
                                  .+--..|.++.|+++|+|+++-+ =-+|++||+. +.++....+.
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~v  312 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPV  312 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEee
Confidence                        11124789999999999998763 2789999994 4455444443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=3.4e-11  Score=97.63  Aligned_cols=171  Identities=19%  Similarity=0.195  Sum_probs=129.0

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECC-C-
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNAD-R-   71 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~-~-   71 (216)
                      .+...+.|+|-...+++++....|+|||.+.++....+.....+.                     .||.|+||+-- . 
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            356678899988889999988899999999998887776554432                     89999999843 2 


Q ss_pred             ---cceeeeeec-------cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942           72 ---GAYLNMFSG-------HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        72 ---~~~~~~~~~-------~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                         .+.+..+.+       ..+.=.-++|.....+|++++.-+.|++||.........++..              ....
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~--------------s~t~ 1210 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG--------------SSTL 1210 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC--------------CCcc
Confidence               222222221       1222245788887777777777899999999988887777652              3455


Q ss_pred             eEEEEeC-CCCcEEEEecccCeE-----------------EeeeCC--EEEEEEecCCC-eEEEEeCCCcEEEEEcccc
Q 043942          142 VTCLSWP-GTSKYLVTGCVDGKV-----------------DGHIDA--IQSLSVSAIRE-SLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       142 v~~~~~~-~~~~~l~~~~~~~~i-----------------~~~~~~--i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~  199 (216)
                      ++++.-+ ..|+.+++|..||.+                 ..|...  |..+.+.++|- .|++++.||.|++||++..
T Consensus      1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            6666543 357999999999998                 566666  99999998775 4999999999999999874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=3.3e-11  Score=93.51  Aligned_cols=121  Identities=14%  Similarity=0.124  Sum_probs=87.6

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC---CeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN---ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      +..|.+||..... .+.+..+...+...+|+|||+.|+.++.+   ..|++||+.+++......                
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----------------  245 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----------------  245 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----------------
Confidence            4789999987554 45566778889999999999999887643   469999998876433221                


Q ss_pred             eecCeEEEEeCCCCcEEEEec-ccCeE---------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEccc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGC-VDGKV---------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAE  198 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~-~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~  198 (216)
                      .......++|+|||+.|+.+. .+|..               ..+...+....|+|||+.|+..+ .++...||++..
T Consensus       246 ~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        246 FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            122334689999999887764 56643               22344577899999999877655 578888888754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.37  E-value=4.2e-11  Score=85.95  Aligned_cols=143  Identities=19%  Similarity=0.333  Sum_probs=99.7

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC--CCCcc-----------cCcEEEEE--ECC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGGI-----------EDSTVWMW--NAD   70 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~~-----------~~~~v~i~--d~~   70 (216)
                      .++....|...|..+-|+..-+++++.+.|..+.---.+.++.+..+..  ...+.           ..+.|..-  ..+
T Consensus       106 ~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~  185 (404)
T KOG1409|consen  106 FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQN  185 (404)
T ss_pred             hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeec
Confidence            4455667999999999999889999999887765444444444332221  11111           22333222  223


Q ss_pred             CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee-EEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF-HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      .-.++.++.+|.+.+.+++|.|..+.+.+|..|..+.+||+--++-. .+...               |.+.|..+..-+
T Consensus       186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g---------------h~~kV~~l~~~~  250 (404)
T KOG1409|consen  186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG---------------HNDKVQALSYAQ  250 (404)
T ss_pred             CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc---------------chhhhhhhhhhh
Confidence            44567788999999999999999999999999999999999854432 33333               667777777766


Q ss_pred             CCcEEEEecccCeE
Q 043942          150 TSKYLVTGCVDGKV  163 (216)
Q Consensus       150 ~~~~l~~~~~~~~i  163 (216)
                      --+.+.+++.||.+
T Consensus       251 ~t~~l~S~~edg~i  264 (404)
T KOG1409|consen  251 HTRQLISCGEDGGI  264 (404)
T ss_pred             hheeeeeccCCCeE
Confidence            66777788888777

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.37  E-value=1.2e-11  Score=90.19  Aligned_cols=151  Identities=15%  Similarity=0.121  Sum_probs=100.8

Q ss_pred             eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcE
Q 043942           17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKT   96 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~   96 (216)
                      +..+..++.++++|.+..+....+++......              ..++++..         .-...-+.+.|..+...
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--------------~~kl~~~~---------~v~~~~~ai~~~~~~~s  121 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK--------------GAKLLDVS---------CVPKRPTAISFIREDTS  121 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC--------------cceeeeEe---------ecccCcceeeeeeccce
Confidence            34455677888888888777666666543221              12222211         11222334444444433


Q ss_pred             EEE---ecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------
Q 043942           97 ICT---GSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------  163 (216)
Q Consensus        97 l~t---~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------  163 (216)
                      ...   +++...+.+|....+.....+-                |-..++.++|+||+++++++..|..|          
T Consensus       122 v~v~dkagD~~~~di~s~~~~~~~~~lG----------------hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~  185 (390)
T KOG3914|consen  122 VLVADKAGDVYSFDILSADSGRCEPILG----------------HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV  185 (390)
T ss_pred             EEEEeecCCceeeeeecccccCcchhhh----------------hhhhhheeeecCCCCEEEEecCCceEEEEecCcccc
Confidence            333   3455556666655544433332                88999999999999999999999998          


Q ss_pred             -----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          164 -----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       164 -----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                           .+|..-|..++.-++ ..|+++|.|+++++||+.+++.+..++.
T Consensus       186 IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  186 IESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             hhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccch
Confidence                 689999999998665 4589999999999999999998755443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.36  E-value=1.4e-10  Score=82.98  Aligned_cols=195  Identities=16%  Similarity=0.171  Sum_probs=126.7

Q ss_pred             CCceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEE---------EEeCCCCcc-------------
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQC---------TVEGPRGGI-------------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~---------~~~~~~~~~-------------   59 (216)
                      +.+.-..++....++.+++|||||+ .|.+...+-.|.||.+.+.+...         -+..+..+-             
T Consensus        80 Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy  159 (447)
T KOG4497|consen   80 QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDY  159 (447)
T ss_pred             cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHH
Confidence            3444556666778899999999995 56677788999999998764332         111122111             


Q ss_pred             -----------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEe
Q 043942           60 -----------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN  110 (216)
Q Consensus        60 -----------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd  110 (216)
                                                   .++.+.+||.--...+..+. -.-.+..++|+|.+++|+.|+.|+.+++.+
T Consensus       160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhc
Confidence                                         67778899865443433333 234689999999999999999999999876


Q ss_pred             CCCCceeEEeec------cc------------------cccccc---------------ce------------EEEeeee
Q 043942          111 PKGGENFHAIRR------SS------------------LEFSLN---------------YW------------MICTSLY  139 (216)
Q Consensus       111 ~~~~~~~~~~~~------~~------------------~~~~~~---------------~~------------~~~~~~~  139 (216)
                      --+-+...++-.      +.                  ..+.+.               ..            .-.....
T Consensus       239 h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk  318 (447)
T KOG4497|consen  239 HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK  318 (447)
T ss_pred             eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence            554433222211      00                  000000               00            0000123


Q ss_pred             cCeEEEEeCCCCcEEEEecccCe--E-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDGK--V-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ..+..++|++|..++++-.++-.  +             .....+|....|+|....|+.+.....+++|....
T Consensus       319 ~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg  392 (447)
T KOG4497|consen  319 CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG  392 (447)
T ss_pred             cccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence            44677899999999888655421  1             23456899999999988888887778899998765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1e-10  Score=91.10  Aligned_cols=153  Identities=18%  Similarity=0.157  Sum_probs=93.6

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTC   87 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~   87 (216)
                      +.+..+...+.+..|+|||+.|+..+.+.                       ....|++||+.+++... +....+....
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~-----------------------g~~~L~~~dl~tg~~~~-lt~~~g~~~~  266 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFEN-----------------------RKAEIFVQDIYTQVREK-VTSFPGINGA  266 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecC-----------------------CCcEEEEEECCCCCeEE-ecCCCCCcCC
Confidence            34444556778899999999888766432                       12345666666554322 2222233457


Q ss_pred             EEEcCCCcEEEE-ecCCCe--EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cCe-
Q 043942           88 GDFTTDGKTICT-GSDNAT--LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DGK-  162 (216)
Q Consensus        88 ~~~~~~~~~l~t-~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~-  162 (216)
                      .+|+|||+.|+. .+.++.  |+++|+.+++... +..               +........|+|||+.++..+. ++. 
T Consensus       267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~---------------~~~~~~~p~wSpDG~~I~f~s~~~g~~  330 (448)
T PRK04792        267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITR---------------HRAIDTEPSWHPDGKSLIFTSERGGKP  330 (448)
T ss_pred             eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Ccc---------------CCCCccceEECCCCCEEEEEECCCCCc
Confidence            899999998865 455554  8888988765433 322               3344567889999998766543 332 


Q ss_pred             -E-------------EeeeCCEEEEEEecCCCeEEEEeC-CC--cEEEEEccccc
Q 043942          163 -V-------------DGHIDAIQSLSVSAIRESLVSVSV-DG--TARVFEIAEFR  200 (216)
Q Consensus       163 -i-------------~~~~~~i~~~~~~~~~~~l~s~~~-d~--~v~vw~~~~~~  200 (216)
                       +             ..........+|+|||++|+..+. ++  .|.++|+.+++
T Consensus       331 ~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        331 QIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             eEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence             2             111122345689999999887655 34  45556766654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=2.6e-11  Score=90.61  Aligned_cols=199  Identities=16%  Similarity=0.136  Sum_probs=135.6

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe-CCCCcc------------------cCcEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE-GPRGGI------------------EDSTVW   65 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~~------------------~~~~v~   65 (216)
                      .+...|..|.+-|+.+.|+..|..|++++.|..|.+||...++....+. +|...+                  .||.|+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            4556788999999999999999999999999999999998887665553 333322                  677777


Q ss_pred             EEECC-Ccce--eeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccc-----------ccc
Q 043942           66 MWNAD-RGAY--LNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEF-----------SLN  130 (216)
Q Consensus        66 i~d~~-~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~-----------~~~  130 (216)
                      +=.+. ++..  ...+..|.++|..++.-|+. .-+.+++.|+.+.-+|++.+.....+.......           .+.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            76654 2322  23455699999999999965 568899999999999998765433332211000           000


Q ss_pred             ---ceEEE--------------------------------eeeecCeEEEEeCCCCcEEEEecccCeE------------
Q 043942          131 ---YWMIC--------------------------------TSLYDGVTCLSWPGTSKYLVTGCVDGKV------------  163 (216)
Q Consensus       131 ---~~~~~--------------------------------~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------  163 (216)
                         .+.+.                                ....-.|++++|+.++.-+.++..|-.|            
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence               00000                                0123458899999766655555444433            


Q ss_pred             ---------------EeeeC--CEEEEEE-ecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          164 ---------------DGHID--AIQSLSV-SAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       164 ---------------~~~~~--~i~~~~~-~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                                     ++|..  .|..+-| -|..+|+++|+.=|.|.||+-.+++.+.
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~  430 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR  430 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence                           34433  3555554 6788999999999999999987776543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.34  E-value=5.7e-12  Score=63.62  Aligned_cols=39  Identities=38%  Similarity=0.627  Sum_probs=37.3

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRD   42 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd   42 (216)
                      |++++++++|.+.|++++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            578999999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=5.1e-11  Score=90.79  Aligned_cols=163  Identities=13%  Similarity=0.249  Sum_probs=124.0

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeec
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSG   80 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~   80 (216)
                      |++|+.+..+..-.+.++++..++...+|++|+.+|.|..||.++.....++....                    .+..
T Consensus       162 LEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~--------------------~v~s  221 (703)
T KOG2321|consen  162 LEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS--------------------SVNS  221 (703)
T ss_pred             ccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc--------------------ccCC
Confidence            57899999998888999999999998999999999999999998776655544221                    1222


Q ss_pred             cC-----CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC--CcE
Q 043942           81 HG-----SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT--SKY  153 (216)
Q Consensus        81 ~~-----~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~  153 (216)
                      |.     ..|+++.|+.+|-.+++|+.+|.+.+||++..+++..-..              +...+|..+.|.+.  +..
T Consensus       222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--------------~~e~pi~~l~~~~~~~q~~  287 (703)
T KOG2321|consen  222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--------------GYELPIKKLDWQDTDQQNK  287 (703)
T ss_pred             CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--------------CCccceeeecccccCCCce
Confidence            33     3499999999999999999999999999998887654432              14567888888765  344


Q ss_pred             EEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          154 LVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       154 l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      +++..  ..+              ......+..+|+-|++-+++++-.+..+..|=+...
T Consensus       288 v~S~D--k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  288 VVSMD--KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             EEecc--hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence            54432  222              334456899999999999999988888777766543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.31  E-value=4.7e-09  Score=79.58  Aligned_cols=205  Identities=15%  Similarity=0.193  Sum_probs=122.1

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEc-CCCcEEEEECCCCceEEEEeCCCC-------c---c----------
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRG-------G---I----------   59 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~-------~---~----------   59 (216)
                      +.+++.+++++.... ..++++|+||++++++. ..+.+.++|.++.+.++.+.....       .   +          
T Consensus        65 ~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV  143 (369)
T PF02239_consen   65 LATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV  143 (369)
T ss_dssp             TTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred             CCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence            457788888886554 57899999999988776 579999999999999888754311       0   1          


Q ss_pred             ----cCcEEEEEECCCcceee-eeeccCCCeeEEEEcCCCcEEEEe-cCCCeEEEEeCCCCceeEEeeccccc-------
Q 043942           60 ----EDSTVWMWNADRGAYLN-MFSGHGSGLTCGDFTTDGKTICTG-SDNATLSIWNPKGGENFHAIRRSSLE-------  126 (216)
Q Consensus        60 ----~~~~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~-------  126 (216)
                          ..+.|.+.|......+. .............|+|++++++.+ ..++.|.++|.++++.+..+......       
T Consensus       144 v~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~  223 (369)
T PF02239_consen  144 VNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN  223 (369)
T ss_dssp             EEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred             EEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence                45667777766543332 222234567789999999987664 56779999999988877655431110       


Q ss_pred             -ccccc---eEEE---------ee-------------------eecCeEEEEeCCCCcEEEEe----cccCeE-------
Q 043942          127 -FSLNY---WMIC---------TS-------------------LYDGVTCLSWPGTSKYLVTG----CVDGKV-------  163 (216)
Q Consensus       127 -~~~~~---~~~~---------~~-------------------~~~~v~~~~~~~~~~~l~~~----~~~~~i-------  163 (216)
                       +.+..   +...         .+                   ..+.-..+..+|+++++++.    ...+.+       
T Consensus       224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t  303 (369)
T PF02239_consen  224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT  303 (369)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred             ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence             00110   1000         00                   11222556779999999887    333444       


Q ss_pred             --------EeeeCCEEEEEEecCCCeEEEEeCC--CcEEEEEcccccceeecC
Q 043942          164 --------DGHIDAIQSLSVSAIRESLVSVSVD--GTARVFEIAEFRRATKAP  206 (216)
Q Consensus       164 --------~~~~~~i~~~~~~~~~~~l~s~~~d--~~v~vw~~~~~~~~~~~~  206 (216)
                              ......+..+.|+++|+++..+..+  +.|.+||..+.+....++
T Consensus       304 l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  304 LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence                    1111248999999999977655443  379999999998877665

...

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=7.6e-11  Score=86.22  Aligned_cols=111  Identities=12%  Similarity=0.223  Sum_probs=92.9

Q ss_pred             eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC------ceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG------ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      +.+.+|.+.|..+.|+.++++|++|+.|..+++|.+...      +++.....              .|...|.+++|..
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~--------------~H~SNIF~L~F~~  115 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH--------------PHRSNIFSLEFDL  115 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccC--------------ccccceEEEEEcc
Confidence            346689999999999999999999999999999998732      33332221              1678999999999


Q ss_pred             CCcEEEEecccCeE-------------Eee---eCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          150 TSKYLVTGCVDGKV-------------DGH---IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       150 ~~~~l~~~~~~~~i-------------~~~---~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ..+++++|+.++.+             ..|   .+.|+.+..+|-.+.|++.+.++.|.+||.+...
T Consensus       116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  116 ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            99999999999988             233   3489999999999999999999999999998755

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=3.4e-09  Score=82.14  Aligned_cols=180  Identities=11%  Similarity=0.075  Sum_probs=102.2

Q ss_pred             eEEeeccccceEEEEEccCCCE--E-EEEcCC--CcEEEEECCCCceEEEE--eCCCCcc---c---------------C
Q 043942            7 ASEILGHKDSFSSLAFSTDGQL--L-ASGGFH--GLVQNRDTSSRNLQCTV--EGPRGGI---E---------------D   61 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~--l-~s~~~d--~~v~vwd~~~~~~~~~~--~~~~~~~---~---------------~   61 (216)
                      .+.+......+.+-.|+|||+.  + ++...+  ..|.+.++.+++.....  .+.....   .               +
T Consensus       177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~d  256 (428)
T PRK01029        177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPD  256 (428)
T ss_pred             ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence            3445545566778899999975  2 233333  35777788777543322  2211111   1               2


Q ss_pred             cEEEEEECCCc---ceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEE--eCCC-CceeEEeecccccccccceEE
Q 043942           62 STVWMWNADRG---AYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIW--NPKG-GENFHAIRRSSLEFSLNYWMI  134 (216)
Q Consensus        62 ~~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~w--d~~~-~~~~~~~~~~~~~~~~~~~~~  134 (216)
                      ..+..|++..+   ..........+.....+|+|||+.|+..+ .++...+|  ++.. +.....+..            
T Consensus       257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~------------  324 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK------------  324 (428)
T ss_pred             eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc------------
Confidence            22333565542   22222222233456789999999887655 45654444  4432 222333322            


Q ss_pred             EeeeecCeEEEEeCCCCcEEEEeccc-C--eE-------------EeeeCCEEEEEEecCCCeEEEEeC---CCcEEEEE
Q 043942          135 CTSLYDGVTCLSWPGTSKYLVTGCVD-G--KV-------------DGHIDAIQSLSVSAIRESLVSVSV---DGTARVFE  195 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~~~~~l~~~~~~-~--~i-------------~~~~~~i~~~~~~~~~~~l~s~~~---d~~v~vw~  195 (216)
                         ....+....|+|||+.|+..+.+ +  .+             ......+....|+|||+.|+..+.   +..|++++
T Consensus       325 ---~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        325 ---KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             ---CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence               33456788999999988765443 2  22             111235677899999998875433   35688889


Q ss_pred             cccccc
Q 043942          196 IAEFRR  201 (216)
Q Consensus       196 ~~~~~~  201 (216)
                      +..++.
T Consensus       402 l~~g~~  407 (428)
T PRK01029        402 LITKKT  407 (428)
T ss_pred             CCCCCE
Confidence            876654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.23  E-value=2.1e-09  Score=75.73  Aligned_cols=156  Identities=17%  Similarity=0.199  Sum_probs=98.9

Q ss_pred             eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC---
Q 043942           17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD---   93 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---   93 (216)
                      =.-++||||+.+||.+...|+|+++|+...+. ..+.....                   ....-...|..+.|.+.   
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~-------------------~~~d~~~Aiagl~Fl~~~~s  105 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMS-------------------FPGDLSDAIAGLIFLEYKKS  105 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccc-------------------cCCccccceeeeEeeccccc
Confidence            35789999999999999999999999864322 22221110                   00112345556655432   


Q ss_pred             ---CcEEEEecCCCeEEEEeCCCC-----ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942           94 ---GKTICTGSDNATLSIWNPKGG-----ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--  163 (216)
Q Consensus        94 ---~~~l~t~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--  163 (216)
                         ...|++-..+|.++-|-+..+     +..+.+..            .......|.++.++|..+.|++|+....-  
T Consensus       106 ~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf------------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~  173 (282)
T PF15492_consen  106 AQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSF------------SSHYPHGINSAVYHPKHRLLLVGGCEQNQDG  173 (282)
T ss_pred             cccceeEEEEeccceeeeEEEEcccCCcceeeEEEEe------------cccCCCceeEEEEcCCCCEEEEeccCCCCCc
Confidence               124555556666666554322     12222221            11146688999999988877776542110  


Q ss_pred             ----------------------------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcE
Q 043942          164 ----------------------------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTA  191 (216)
Q Consensus       164 ----------------------------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v  191 (216)
                                                                          ......|..+..||||+.||+...+|.|
T Consensus       174 ~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~l  253 (282)
T PF15492_consen  174 MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSL  253 (282)
T ss_pred             cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeE
Confidence                                                                1124578999999999999999999999


Q ss_pred             EEEEcccccceee
Q 043942          192 RVFEIAEFRRATK  204 (216)
Q Consensus       192 ~vw~~~~~~~~~~  204 (216)
                      .+|++.+.+...+
T Consensus       254 sLW~iPsL~~~~~  266 (282)
T PF15492_consen  254 SLWEIPSLRLQRS  266 (282)
T ss_pred             EEEecCcchhhcc
Confidence            9999998766544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.23  E-value=3.9e-10  Score=79.46  Aligned_cols=167  Identities=16%  Similarity=0.121  Sum_probs=114.3

Q ss_pred             eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEE--EEeCCCCcc-----------------cCcEEEEEECC-Ccceee
Q 043942           17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC--TVEGPRGGI-----------------EDSTVWMWNAD-RGAYLN   76 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~~-----------------~~~~v~i~d~~-~~~~~~   76 (216)
                      -.++.|++.+..++++..+|.+.+-+.......+  +++.|+.+.                 .|+.+..||++ .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            3467888888889999999999866655554333  555555443                 89999999999 333333


Q ss_pred             e-eeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCC-CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc-
Q 043942           77 M-FSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK-  152 (216)
Q Consensus        77 ~-~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  152 (216)
                      . .+-|...|.++.-+| .+.+++||+.|-.|++||.++ ++++..-+                ..+.|..++++|.-. 
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~----------------v~GGVWRi~~~p~~~~  267 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK----------------VGGGVWRIKHHPEIFH  267 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc----------------cccceEEEEecchhhh
Confidence            3 456888899998876 678999999999999999995 45554443                457788888887432 


Q ss_pred             -EEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeC-CCcEE-EEEcccc
Q 043942          153 -YLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSV-DGTAR-VFEIAEF  199 (216)
Q Consensus       153 -~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~v~-vw~~~~~  199 (216)
                       .++++-.+|.-                  ..|.+-.....|.....+|+||+. |+.++ +|-.-++
T Consensus       268 ~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  268 RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             HHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence             22222222211                  456666667777555567888774 77755 7765443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.23  E-value=3.1e-09  Score=83.51  Aligned_cols=159  Identities=15%  Similarity=0.131  Sum_probs=106.8

Q ss_pred             CcEEEEECCCC-ceEEEEeCCCCcc----------------cCcEEEEEECCCcce--eee----eeccCCCeeEEEEcC
Q 043942           36 GLVQNRDTSSR-NLQCTVEGPRGGI----------------EDSTVWMWNADRGAY--LNM----FSGHGSGLTCGDFTT   92 (216)
Q Consensus        36 ~~v~vwd~~~~-~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~--~~~----~~~~~~~v~~~~~~~   92 (216)
                      +.+.+|++... .....+.......                .+|.|.+||++.+..  ...    ...|..+++.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            46899999876 3333333322211                899999999987654  222    235888999999976


Q ss_pred             CC--cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecccCeE------
Q 043942           93 DG--KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV------  163 (216)
Q Consensus        93 ~~--~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i------  163 (216)
                      +.  .-+++++.||.|..|+++.-..............   ..........++.++|.+ +...+++|+++|.|      
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~---~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH---KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccc---cccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence            44  4489999999999998885543221111100000   000001445688999977 45678899999988      


Q ss_pred             ----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          164 ----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       164 ----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                                      ..|.++|..+.++|-+..++..+.|-++++|.-.
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~  428 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED  428 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence                            4567899999999987655555559999999977

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=1.7e-09  Score=84.28  Aligned_cols=123  Identities=12%  Similarity=0.060  Sum_probs=86.4

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC---CCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD---NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ...|.++|.... ....+..+...+.+.+|+|||+.|+..+.   +..|++||+.+++... +..               
T Consensus       181 ~~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~---------------  243 (435)
T PRK05137        181 IKRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGN---------------  243 (435)
T ss_pred             ceEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eec---------------
Confidence            347888887544 34556667888999999999999887653   4689999999876543 222               


Q ss_pred             eecCeEEEEeCCCCcEEE-EecccCe--E-------------EeeeCCEEEEEEecCCCeEEEEeC-CC--cEEEEEccc
Q 043942          138 LYDGVTCLSWPGTSKYLV-TGCVDGK--V-------------DGHIDAIQSLSVSAIRESLVSVSV-DG--TARVFEIAE  198 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~-~~~~~~~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~-d~--~v~vw~~~~  198 (216)
                      ....+....|+|||+.|+ +.+.++.  +             ..+........|+|||+.|+..+. +|  .|++||+..
T Consensus       244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g  323 (435)
T PRK05137        244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG  323 (435)
T ss_pred             CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence            445667889999998775 4444443  2             223344567899999998887664 33  678888765


Q ss_pred             cc
Q 043942          199 FR  200 (216)
Q Consensus       199 ~~  200 (216)
                      ++
T Consensus       324 ~~  325 (435)
T PRK05137        324 SN  325 (435)
T ss_pred             CC
Confidence            43

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.21  E-value=3e-10  Score=80.90  Aligned_cols=186  Identities=15%  Similarity=0.230  Sum_probs=122.1

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-----eEEEEeCCCCcc-----------------------------
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-----LQCTVEGPRGGI-----------------------------   59 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~-----------------------------   59 (216)
                      .+.|+++.|...|.||++|...|.|.+|.-+...     ....++.|....                             
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4679999999999999999999999999765432     222344444322                             


Q ss_pred             -cCcEEEEEECCCcc-------------------e-----------------------eeee-eccCCCeeEEEEcCCCc
Q 043942           60 -EDSTVWMWNADRGA-------------------Y-----------------------LNMF-SGHGSGLTCGDFTTDGK   95 (216)
Q Consensus        60 -~~~~v~i~d~~~~~-------------------~-----------------------~~~~-~~~~~~v~~~~~~~~~~   95 (216)
                       .+.+|++|.+....                   +                       .+.. ..|...+.++.|+.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence             89999999875320                   0                       0001 35777789999999888


Q ss_pred             EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccCeE-----------
Q 043942           96 TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDGKV-----------  163 (216)
Q Consensus        96 ~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~i-----------  163 (216)
                      .++++ .|-.|.+|++........+-........+       ...-|++..|+|.- +.+.-++..|.|           
T Consensus       186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmee-------LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEE-------LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             eeeec-cceeeeeccccccCCceEEEeccCccHHH-------HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence            88776 57789999988554332221100000000       23346777788743 445556666666           


Q ss_pred             -------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc-ceeecCCc
Q 043942          164 -------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR-RATKAPSY  208 (216)
Q Consensus       164 -------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~-~~~~~~~~  208 (216)
                                         .+-...|..+.|+++|+|+++-+ =-+|++||++..+ ++..+|.|
T Consensus       258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechH
Confidence                               22235789999999999998764 3689999998644 44445443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=5.1e-09  Score=81.37  Aligned_cols=146  Identities=23%  Similarity=0.149  Sum_probs=86.5

Q ss_pred             eeccccceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEE
Q 043942           10 ILGHKDSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCG   88 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~   88 (216)
                      +....+.+...+|+|||+.|+ +.+.++...+|.                        +|+.++. ...+..+.......
T Consensus       235 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~------------------------~d~~~~~-~~~lt~~~~~~~~~  289 (427)
T PRK02889        235 VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT------------------------VNADGSG-LRRLTQSSGIDTEP  289 (427)
T ss_pred             eecCCCCccceEECCCCCEEEEEEccCCCceEEE------------------------EECCCCC-cEECCCCCCCCcCe
Confidence            333445566889999998876 456565544443                        3443332 23444455556678


Q ss_pred             EEcCCCcEEEEecC-CCeEEEEeC--CCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC---e
Q 043942           89 DFTTDGKTICTGSD-NATLSIWNP--KGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG---K  162 (216)
Q Consensus        89 ~~~~~~~~l~t~~~-d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~  162 (216)
                      .|+|||+.++..+. ++...+|.+  .+++... +..               .........|+|+|++++..+.++   .
T Consensus       290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~---------------~g~~~~~~~~SpDG~~Ia~~s~~~g~~~  353 (427)
T PRK02889        290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTF---------------TGSYNTSPRISPDGKLLAYISRVGGAFK  353 (427)
T ss_pred             EEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-Eec---------------CCCCcCceEECCCCCEEEEEEccCCcEE
Confidence            89999998876553 455555544  4443222 221               122234578999999988766543   2


Q ss_pred             E------------EeeeCCEEEEEEecCCCeEEEEeCCC-c--EEEEEc
Q 043942          163 V------------DGHIDAIQSLSVSAIRESLVSVSVDG-T--ARVFEI  196 (216)
Q Consensus       163 i------------~~~~~~i~~~~~~~~~~~l~s~~~d~-~--v~vw~~  196 (216)
                      +            ...........|+|||++|+..+.++ .  +.+.++
T Consensus       354 I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        354 LYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             EEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            3            11112346779999999988776543 3  444444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=1.5e-09  Score=79.26  Aligned_cols=137  Identities=14%  Similarity=0.212  Sum_probs=109.1

Q ss_pred             cceEEEEEccCCC-EEEEEcCC--CcEEEEECCCCceEEEEeCCCCcc---------------------------cCcEE
Q 043942           15 DSFSSLAFSTDGQ-LLASGGFH--GLVQNRDTSSRNLQCTVEGPRGGI---------------------------EDSTV   64 (216)
Q Consensus        15 ~~v~~~~~s~~~~-~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~~---------------------------~~~~v   64 (216)
                      .++..+.-++... .+|+|+..  ..+++||++..+.+.+-.......                           .-+.+
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            3455666666444 56668888  889999999886554443322211                           56789


Q ss_pred             EEEECCCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEE-eecccccccccceEEEeeeecCe
Q 043942           65 WMWNADRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA-IRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        65 ~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      ++||++.+ +++..+.--..+++++...|.++++++|...+.+..||++.++.... +..               ..+.+
T Consensus       229 R~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg---------------~tGsi  293 (412)
T KOG3881|consen  229 RLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG---------------ITGSI  293 (412)
T ss_pred             EEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC---------------ccCCc
Confidence            99999854 67788877788999999999999999999999999999999988766 555               78899


Q ss_pred             EEEEeCCCCcEEEEecccCeEEee
Q 043942          143 TCLSWPGTSKYLVTGCVDGKVDGH  166 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i~~~  166 (216)
                      +++..+|..+++++++-|+.+.-|
T Consensus       294 rsih~hp~~~~las~GLDRyvRIh  317 (412)
T KOG3881|consen  294 RSIHCHPTHPVLASCGLDRYVRIH  317 (412)
T ss_pred             ceEEEcCCCceEEeeccceeEEEe
Confidence            999999999999999999999444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.18  E-value=4.2e-09  Score=86.98  Aligned_cols=176  Identities=11%  Similarity=0.047  Sum_probs=118.3

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce-------EEEEeCCCCcc--------------------cCcEEE
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL-------QCTVEGPRGGI--------------------EDSTVW   65 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-------~~~~~~~~~~~--------------------~~~~v~   65 (216)
                      -...+.++...+.++.+|.++.||.|++.++.-.+.       ......+..+.                    ..+.+.
T Consensus      1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred             cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence            356788999999999999999999999999876211       11111111111                    567788


Q ss_pred             EEECCCcceeeeee--ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           66 MWNADRGAYLNMFS--GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        66 i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      .||+++.....+++  ...+.|++++.+|-+.++++|+..|.+.+||++=+..+.....+              +..+++
T Consensus      1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--------------~~~~i~ 1242 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--------------ARAPIR 1242 (1431)
T ss_pred             EecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--------------ccCCcc
Confidence            99998765554443  23477999999999999999999999999999977777666542              335566


Q ss_pred             EEEeCC---CCcEEEEecc--cCeE---------------------------------EeeeCCEEEEEEecCCCeEEEE
Q 043942          144 CLSWPG---TSKYLVTGCV--DGKV---------------------------------DGHIDAIQSLSVSAIRESLVSV  185 (216)
Q Consensus       144 ~~~~~~---~~~~l~~~~~--~~~i---------------------------------~~~~~~i~~~~~~~~~~~l~s~  185 (216)
                      .+..+|   .....++++.  .+.+                                 ..+.-......+..-+.++.+|
T Consensus      1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred             eEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Confidence            555544   2234444333  3333                                 0111222333444445688899


Q ss_pred             eCCCcEEEEEcccccce
Q 043942          186 SVDGTARVFEIAEFRRA  202 (216)
Q Consensus       186 ~~d~~v~vw~~~~~~~~  202 (216)
                      +.|..|+.||....+..
T Consensus      1323 gsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             CCccceeeccCCCcccc
Confidence            99999999999876654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=7.1e-09  Score=79.04  Aligned_cols=168  Identities=10%  Similarity=0.111  Sum_probs=114.6

Q ss_pred             ccccceEEEEEccCC--CEEEE-----EcCCCcEEEEECCCCceEEEE---------------eCCCCcc----------
Q 043942           12 GHKDSFSSLAFSTDG--QLLAS-----GGFHGLVQNRDTSSRNLQCTV---------------EGPRGGI----------   59 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~--~~l~s-----~~~d~~v~vwd~~~~~~~~~~---------------~~~~~~~----------   59 (216)
                      -|...|..+.+||..  ..+|+     .+.-..|++|..........+               .....++          
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk  242 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK  242 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence            366789999999863  33443     244567899887632111111               0000000          


Q ss_pred             ------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEE--ecCCCeEEEEeCCCCceeEEeecccccccccc
Q 043942           60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICT--GSDNATLSIWNPKGGENFHAIRRSSLEFSLNY  131 (216)
Q Consensus        60 ------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  131 (216)
                            .+.++++++++.....-.+. ..++|.++.|+|+++.+++  |-.=..+.++|++ ++.+..+.          
T Consensus       243 tn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----------  310 (566)
T KOG2315|consen  243 TNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----------  310 (566)
T ss_pred             CCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----------
Confidence                  56677777777333333333 5789999999999987655  4467789999988 88887774          


Q ss_pred             eEEEeeeecCeEEEEeCCCCcEEEEecccC---eE------------EeeeCCEEEEEEecCCCeEEEEeC------CCc
Q 043942          132 WMICTSLYDGVTCLSWPGTSKYLVTGCVDG---KV------------DGHIDAIQSLSVSAIRESLVSVSV------DGT  190 (216)
Q Consensus       132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~i------------~~~~~~i~~~~~~~~~~~l~s~~~------d~~  190 (216)
                             .++-+++-|+|.|++++.++-++   .+            ......-+-+.|+|||++|+|++.      |+.
T Consensus       311 -------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg  383 (566)
T KOG2315|consen  311 -------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNG  383 (566)
T ss_pred             -------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCC
Confidence                   46778999999999998887654   33            122234567899999999998764      688


Q ss_pred             EEEEEccc
Q 043942          191 ARVFEIAE  198 (216)
Q Consensus       191 v~vw~~~~  198 (216)
                      ++||++..
T Consensus       384 ~KiwhytG  391 (566)
T KOG2315|consen  384 IKIWHYTG  391 (566)
T ss_pred             eEEEEecC
Confidence            99999853

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.18  E-value=2.1e-07  Score=70.44  Aligned_cols=174  Identities=18%  Similarity=0.247  Sum_probs=109.0

Q ss_pred             cceEEEEEccCCCEEEEEcC-CCcEEEEECCC-CceEEE---Ee----CCC----Cc-----c--------------cCc
Q 043942           15 DSFSSLAFSTDGQLLASGGF-HGLVQNRDTSS-RNLQCT---VE----GPR----GG-----I--------------EDS   62 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~-~~~~~~---~~----~~~----~~-----~--------------~~~   62 (216)
                      .....++++|++++|+++.. +|.|.++++.. +.....   +.    ++.    ..     +              ...
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence            44567999999999998875 89999999987 433322   21    111    00     0              455


Q ss_pred             EEEEEECCCcc--e--eeeee-ccCCCeeEEEEcCCCcEEEEe-cCCCeEEEEeCC--CCce--eEEeecccccccccce
Q 043942           63 TVWMWNADRGA--Y--LNMFS-GHGSGLTCGDFTTDGKTICTG-SDNATLSIWNPK--GGEN--FHAIRRSSLEFSLNYW  132 (216)
Q Consensus        63 ~v~i~d~~~~~--~--~~~~~-~~~~~v~~~~~~~~~~~l~t~-~~d~~i~~wd~~--~~~~--~~~~~~~~~~~~~~~~  132 (216)
                      .|.+|++....  .  ...+. ........++|+|+++++.+. -.++.|.++++.  ++..  ++.+......  ..  
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~--~~--  242 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG--FT--  242 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT--SC--
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc--cc--
Confidence            67777776543  2  12222 234567899999999887554 578889999988  4432  2222211000  00  


Q ss_pred             EEEeeeecCeEEEEeCCCCcEEEEeccc-CeE------------------EeeeCCEEEEEEecCCCeEEEEeC-CCcEE
Q 043942          133 MICTSLYDGVTCLSWPGTSKYLVTGCVD-GKV------------------DGHIDAIQSLSVSAIRESLVSVSV-DGTAR  192 (216)
Q Consensus       133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~v~  192 (216)
                           .......++++|+|++|+++... +.|                  .........++++|+|++|+++.. ++.|.
T Consensus       243 -----~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~  317 (345)
T PF10282_consen  243 -----GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS  317 (345)
T ss_dssp             -----SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             -----ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence                 12357889999999998876643 333                  112344789999999999988765 68999


Q ss_pred             EEEcc
Q 043942          193 VFEIA  197 (216)
Q Consensus       193 vw~~~  197 (216)
                      +|++.
T Consensus       318 vf~~d  322 (345)
T PF10282_consen  318 VFDID  322 (345)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.17  E-value=1.5e-10  Score=58.31  Aligned_cols=39  Identities=28%  Similarity=0.724  Sum_probs=36.5

Q ss_pred             cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEe
Q 043942           72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN  110 (216)
Q Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd  110 (216)
                      ++++.++++|.+.|++++|+|+++++++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=7.8e-09  Score=80.33  Aligned_cols=124  Identities=17%  Similarity=0.102  Sum_probs=83.2

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe-cCCC--eEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG-SDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~-~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      +..+++||+.+++... +....+.+...+|+|||+.|+.. +.++  .|++||+.+++......                
T Consensus       222 ~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~----------------  284 (429)
T PRK03629        222 RSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD----------------  284 (429)
T ss_pred             CcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC----------------
Confidence            4578899998775432 22233445578999999988754 4444  59999998876544332                


Q ss_pred             eecCeEEEEeCCCCcEEEEecccC-e--E-------------EeeeCCEEEEEEecCCCeEEEEeCC---CcEEEEEccc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDG-K--V-------------DGHIDAIQSLSVSAIRESLVSVSVD---GTARVFEIAE  198 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~-~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~d---~~v~vw~~~~  198 (216)
                      ....+....|+|+|+.|+..+.++ .  +             ...........|+|||++|+..+.+   ..|.+||+.+
T Consensus       285 ~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~  364 (429)
T PRK03629        285 GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  364 (429)
T ss_pred             CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence            334567889999999887665532 2  2             1122345568899999999876543   3588899877


Q ss_pred             ccc
Q 043942          199 FRR  201 (216)
Q Consensus       199 ~~~  201 (216)
                      ++.
T Consensus       365 g~~  367 (429)
T PRK03629        365 GGV  367 (429)
T ss_pred             CCe
Confidence            653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=3.7e-09  Score=82.31  Aligned_cols=124  Identities=14%  Similarity=0.134  Sum_probs=82.7

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEE-EecCCC--eEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTIC-TGSDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-t~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ...|++||+.+++... +....+.....+|+|||+.++ +.+.++  .|++||+.+++... +..               
T Consensus       227 ~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~---------------  289 (433)
T PRK04922        227 RSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTN---------------  289 (433)
T ss_pred             CcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Ccc---------------
Confidence            4579999998776533 333445556889999998775 444444  59999998776433 322               


Q ss_pred             eecCeEEEEeCCCCcEEEEecc-cCe--E-------------EeeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEccc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCV-DGK--V-------------DGHIDAIQSLSVSAIRESLVSVSVDG---TARVFEIAE  198 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~-~~~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~~~  198 (216)
                      +.......+|+|||+.++..+. +|.  +             ..+.......+|+|+|++|+..+.++   .|.+||+.+
T Consensus       290 ~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~  369 (433)
T PRK04922        290 HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST  369 (433)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence            3334467899999998876653 332  2             11122344689999999998765433   689999877


Q ss_pred             ccc
Q 043942          199 FRR  201 (216)
Q Consensus       199 ~~~  201 (216)
                      ++.
T Consensus       370 g~~  372 (433)
T PRK04922        370 GSV  372 (433)
T ss_pred             CCe
Confidence            654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.15  E-value=6.7e-10  Score=94.65  Aligned_cols=175  Identities=18%  Similarity=0.255  Sum_probs=136.7

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG   72 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~   72 (216)
                      ++.+-..|.++.-+|...+.+||+.||.|++|....++.+..++.....-                 .||.+.+|.+. .
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            34456778899999999999999999999999998888777665432211                 89999999988 6


Q ss_pred             ceeeeeeccCCCeeEEEEcCCCcEEEEec---CCCeEEEEeCCCCceeEEe-ecccccccccceEEEeeeecCeEEEEeC
Q 043942           73 AYLNMFSGHGSGLTCGDFTTDGKTICTGS---DNATLSIWNPKGGENFHAI-RRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      ++....+.|+.....++|-.  ..+++++   .++.+.+||..-......+ ..               |...++++++-
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~---------------H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC---------------HDGGATVLAYA 2345 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee---------------cCCCceEEEEc
Confidence            67777888999899999875  6777765   6788999997643222111 33               89999999999


Q ss_pred             CCCcEEEEecccCeE---------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          149 GTSKYLVTGCVDGKV---------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       149 ~~~~~l~~~~~~~~i---------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      |..+.|++|+.+|.+         ..|.-+.    ++ ...++++++..|.++||++.....+..+|.
T Consensus      2346 P~~qllisggr~G~v~l~D~rqrql~h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2346 PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             CcceEEEecCCcCcEEEeehHHHHHHHHhhh----hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            999999999999998         2232222    44 667899999999999999999877776664

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.15  E-value=1e-09  Score=79.03  Aligned_cols=196  Identities=18%  Similarity=0.228  Sum_probs=134.8

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC-CCceEEEEeC--CCCcc---------------cCcEEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS-SRNLQCTVEG--PRGGI---------------EDSTVWM   66 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~--~~~~~---------------~~~~v~i   66 (216)
                      .+++.++||.+.|+....-|-..-+++.+.|.++|||--. .++....+..  +..+.               .++++.-
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence            3556788999999999999988889999999999999543 3444333321  11111               4555554


Q ss_pred             EECC----CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec--cccc--------------
Q 043942           67 WNAD----RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR--SSLE--------------  126 (216)
Q Consensus        67 ~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~--~~~~--------------  126 (216)
                      +.+.    +....+....|...+..+-|+-...++++.+.|..+.---.+.+..+..+..  ....              
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~  174 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHS  174 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccc
Confidence            4432    2334455667999999999998888999999887766544444433211111  0000              


Q ss_pred             ----------ccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCe
Q 043942          127 ----------FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRES  181 (216)
Q Consensus       127 ----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~  181 (216)
                                ..........+|.+++.+++|.|....+++|..|..+               .+|...|..+..-+--+.
T Consensus       175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~  254 (404)
T KOG1409|consen  175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ  254 (404)
T ss_pred             cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence                      1112233344588889999999999999999888877               677778888877777788


Q ss_pred             EEEEeCCCcEEEEEccccc
Q 043942          182 LVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       182 l~s~~~d~~v~vw~~~~~~  200 (216)
                      +.+++.||.|.+|+.+...
T Consensus       255 l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  255 LISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eeeccCCCeEEEEecccee
Confidence            9999999999999987543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.15  E-value=4.1e-07  Score=68.09  Aligned_cols=193  Identities=14%  Similarity=0.141  Sum_probs=116.3

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcC----------CCcEEEEECCCCceEEEEeCCCCcc------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGF----------HGLVQNRDTSSRNLQCTVEGPRGGI------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~~~~------------   59 (216)
                      ++++.+.++..-..+- .+ +||||+.|+.+..          +..|.+||..+++.+.++..+..+.            
T Consensus        35 ~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l  112 (352)
T TIGR02658        35 EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL  112 (352)
T ss_pred             CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence            3556666666443332 34 9999988877665          7899999999999999888644311            


Q ss_pred             -------------cCcEEEEEECCCcceeeeeeccCC-------------------------------CeeEE-------
Q 043942           60 -------------EDSTVWMWNADRGAYLNMFSGHGS-------------------------------GLTCG-------   88 (216)
Q Consensus        60 -------------~~~~v~i~d~~~~~~~~~~~~~~~-------------------------------~v~~~-------   88 (216)
                                   .+..|.+.|+.+++.+..+.-...                               .....       
T Consensus       113 s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~  192 (352)
T TIGR02658       113 TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED  192 (352)
T ss_pred             CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCc
Confidence                         367777888777665543321000                               00010       


Q ss_pred             -------EEcC-CCcEEEEecCCCeEEEEeCCCCcee-----EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           89 -------DFTT-DGKTICTGSDNATLSIWNPKGGENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        89 -------~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                             .|.+ +++++.+... |.|.+.|+......     ..+.....   ...+     ......-++++|+++.++
T Consensus       193 ~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~---~~~w-----rP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       193 EYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK---ADGW-----RPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             cccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc---cccc-----CCCcceeEEEcCCCCEEE
Confidence                   1122 5555555444 67777775432211     11110000   0000     233344589999998887


Q ss_pred             Eeccc----------CeE-------------EeeeCCEEEEEEecCCC-eEEEEe-CCCcEEEEEcccccceeec
Q 043942          156 TGCVD----------GKV-------------DGHIDAIQSLSVSAIRE-SLVSVS-VDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       156 ~~~~~----------~~i-------------~~~~~~i~~~~~~~~~~-~l~s~~-~d~~v~vw~~~~~~~~~~~  205 (216)
                      +....          +.+             ..-...+..++++||++ +|++.. .++.|.+.|..+++.+..+
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            74311          223             22356789999999999 777665 5788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.11  E-value=2.3e-07  Score=67.34  Aligned_cols=181  Identities=15%  Similarity=0.133  Sum_probs=126.8

Q ss_pred             EEEEEcc-CCCEEEEEcCCCc-EEEEECCCCceEEEEeCCCCcc-----------------------cCcEEEEEECC-C
Q 043942           18 SSLAFST-DGQLLASGGFHGL-VQNRDTSSRNLQCTVEGPRGGI-----------------------EDSTVWMWNAD-R   71 (216)
Q Consensus        18 ~~~~~s~-~~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~-----------------------~~~~v~i~d~~-~   71 (216)
                      ..++.+| ....++.+-.-|. ..+||..+++....+..+...-                       ..|.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            3567788 4455666655554 6688999988887776544322                       78899999999 6


Q ss_pred             cceeeeeeccCCCeeEEEEcCCCcEEEEecC------------------CCeEEEEeCCCCceeEEeecccccccccceE
Q 043942           72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSD------------------NATLSIWNPKGGENFHAIRRSSLEFSLNYWM  133 (216)
Q Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  133 (216)
                      .+.+..+..|.-....+.+.||++.|+++..                  +-.+.+.|..+|+.+.......         
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~---------  158 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP---------  158 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc---------
Confidence            7888888888777889999999988877631                  1224445555555544432211         


Q ss_pred             EEeeeecCeEEEEeCCCCcEEEEecccCeE--------------------------EeeeCCEEEEEEecCCCeEEEEe-
Q 043942          134 ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------------------DGHIDAIQSLSVSAIRESLVSVS-  186 (216)
Q Consensus       134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------------------~~~~~~i~~~~~~~~~~~l~s~~-  186 (216)
                        ..+...+..++++++|..++..-..|.-                          ..-.+.+-++++++++.++++.+ 
T Consensus       159 --~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP  236 (305)
T PF07433_consen  159 --DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP  236 (305)
T ss_pred             --cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence              1267789999999998877766555432                          23357899999999998886555 


Q ss_pred             CCCcEEEEEcccccceeecCCcc
Q 043942          187 VDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       187 ~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      .-+.+.+||..+++.+...+...
T Consensus       237 rGg~~~~~d~~tg~~~~~~~l~D  259 (305)
T PF07433_consen  237 RGGRVAVWDAATGRLLGSVPLPD  259 (305)
T ss_pred             CCCEEEEEECCCCCEeeccccCc
Confidence            56889999999988776655443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=2.1e-08  Score=78.32  Aligned_cols=148  Identities=16%  Similarity=0.095  Sum_probs=86.1

Q ss_pred             ceEEEEEccCCCEEEEE-cCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942           16 SFSSLAFSTDGQLLASG-GFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG   94 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~   94 (216)
                      .....+|+|||+.|+.. +.++.                        ..|+++|+.+++. ..+..+.......+|+||+
T Consensus       263 ~~~~~~wSPDG~~La~~~~~~g~------------------------~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG  317 (448)
T PRK04792        263 INGAPRFSPDGKKLALVLSKDGQ------------------------PEIYVVDIATKAL-TRITRHRAIDTEPSWHPDG  317 (448)
T ss_pred             CcCCeeECCCCCEEEEEEeCCCC------------------------eEEEEEECCCCCe-EECccCCCCccceEECCCC
Confidence            34567899999877754 43332                        2355566665543 2344455556788999999


Q ss_pred             cEEEEecC-C--CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC---eE---E-
Q 043942           95 KTICTGSD-N--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG---KV---D-  164 (216)
Q Consensus        95 ~~l~t~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~i---~-  164 (216)
                      +.++..+. +  ..|+++|+.+++......                .........|+|+|++++..+.++   .+   . 
T Consensus       318 ~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~----------------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl  381 (448)
T PRK04792        318 KSLIFTSERGGKPQIYRVNLASGKVSRLTF----------------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDL  381 (448)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCEEEEec----------------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence            98876553 3  357777887766433221                112233468999999887765432   12   0 


Q ss_pred             --------eeeCCEEEEEEecCCCeEEEEeC-CCc--EEEEEcccccceeec
Q 043942          165 --------GHIDAIQSLSVSAIRESLVSVSV-DGT--ARVFEIAEFRRATKA  205 (216)
Q Consensus       165 --------~~~~~i~~~~~~~~~~~l~s~~~-d~~--v~vw~~~~~~~~~~~  205 (216)
                              ..........|+|||+.|+..+. ++.  +++++.. ++....+
T Consensus       382 ~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l  432 (448)
T PRK04792        382 ETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARL  432 (448)
T ss_pred             CCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC
Confidence                    00011223479999998876554 343  6667763 4333333

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.09  E-value=2e-09  Score=87.17  Aligned_cols=113  Identities=22%  Similarity=0.248  Sum_probs=94.1

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEE
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCG   88 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~   88 (216)
                      .+.+|.+.|.++.|+.||++++++|.|.++|+|++++.+...                         ...-+|...|..+
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------------~~~fgHsaRvw~~  224 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------------CTGFGHSARVWAC  224 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------------------------cccccccceeEEE
Confidence            578999999999999999999999999998888887665321                         1344699999999


Q ss_pred             EEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942           89 DFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus        89 ~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      .|.|+  .++|++.|.+.++|+.. +..+..+...              ....+..++..++....++++.|+.+
T Consensus       225 ~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h--------------~g~~iw~~~~~~~~~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  225 CFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEH--------------SGKGIWKIAVPIGVIIKVTGGNDSTL  282 (967)
T ss_pred             Eeccc--eeEEeccceEEEEEecc-cceehhhhhh--------------hhcceeEEEEcCCceEEEeeccCcch
Confidence            99988  99999999999999766 5555555541              34678899999999999999999988

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=5.4e-08  Score=75.20  Aligned_cols=145  Identities=12%  Similarity=0.070  Sum_probs=87.0

Q ss_pred             ceEEEEEccCCCE-EEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942           16 SFSSLAFSTDGQL-LASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG   94 (216)
Q Consensus        16 ~v~~~~~s~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~   94 (216)
                      ......|+|||+. ++..+.++                       .+..|+++|+.+++...... ..+.....+|+|||
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~-----------------------~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG  244 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGE-----------------------RKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG  244 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccC-----------------------CCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence            5667788888874 55444432                       13457777777665543332 44556678899999


Q ss_pred             cEEEEe-c--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc-Ce--E-----
Q 043942           95 KTICTG-S--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD-GK--V-----  163 (216)
Q Consensus        95 ~~l~t~-~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~--i-----  163 (216)
                      +.++.. +  .+..|.++|+.+++... +..               .........|+|||+.|+..+.. +.  +     
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~---------------~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl  308 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITN---------------YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL  308 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEE-ccc---------------CCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence            877643 3  34568888988776433 332               22223345799999876655432 22  2     


Q ss_pred             ------EeeeCCEEEEEEecCCCeEEEEeCC---------CcEEEEEccccc
Q 043942          164 ------DGHIDAIQSLSVSAIRESLVSVSVD---------GTARVFEIAEFR  200 (216)
Q Consensus       164 ------~~~~~~i~~~~~~~~~~~l~s~~~d---------~~v~vw~~~~~~  200 (216)
                            ...........|+|+|++|+..+..         ..|.+.|+.+++
T Consensus       309 ~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        309 NSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             CCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence                  0000111235899999998866543         267777877654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.08  E-value=1.1e-09  Score=86.16  Aligned_cols=110  Identities=19%  Similarity=0.370  Sum_probs=84.9

Q ss_pred             eeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCc-eEEEEeCCCCc------------c----cCcEEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRN-LQCTVEGPRGG------------I----EDSTVWMW   67 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~------------~----~~~~v~i~   67 (216)
                      .-..+.+|...|+.+.|+|.. ..+++++.|-.+..||+++.. ..........+            +    ..+.|++|
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence            334567899999999999965 689999999999999998753 22222211111            1    67889999


Q ss_pred             ECCCc-ceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCc
Q 043942           68 NADRG-AYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGE  115 (216)
Q Consensus        68 d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~  115 (216)
                      |.+.| .++..+++|...|..++|+. ....+++++.|++|++||.....
T Consensus       186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence            99965 67788899999999999976 34578899999999999987543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=3.3e-08  Score=77.06  Aligned_cols=144  Identities=19%  Similarity=0.133  Sum_probs=86.0

Q ss_pred             ccceEEEEEccCCCEEEE-EcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942           14 KDSFSSLAFSTDGQLLAS-GGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT   92 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~   92 (216)
                      .+.+...+|+|||+.|+. .+.++                        +..|++||+.++... .+..+........|+|
T Consensus       242 ~g~~~~~~~SpDG~~la~~~~~~g------------------------~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp  296 (430)
T PRK00178        242 EGLNGAPAWSPDGSKLAFVLSKDG------------------------NPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK  296 (430)
T ss_pred             CCCcCCeEECCCCCEEEEEEccCC------------------------CceEEEEECCCCCeE-EcccCCCCcCCeEECC
Confidence            344556889999987774 33332                        234556666655432 3444555566789999


Q ss_pred             CCcEEEEecC-C--CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc-C--eE---
Q 043942           93 DGKTICTGSD-N--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD-G--KV---  163 (216)
Q Consensus        93 ~~~~l~t~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~--~i---  163 (216)
                      |++.++..+. +  ..|+++|+.+++......                .........|+|+|+.++..+.+ +  .+   
T Consensus       297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~----------------~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~  360 (430)
T PRK00178        297 DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF----------------VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQ  360 (430)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCEEEeec----------------CCCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence            9998876553 3  357788887776433221                11222356789999988766543 2  12   


Q ss_pred             ---------EeeeCCEEEEEEecCCCeEEEEeCC-C--cEEEEEccc
Q 043942          164 ---------DGHIDAIQSLSVSAIRESLVSVSVD-G--TARVFEIAE  198 (216)
Q Consensus       164 ---------~~~~~~i~~~~~~~~~~~l~s~~~d-~--~v~vw~~~~  198 (216)
                               ...........|+|||+.++..+.+ +  .+.++++..
T Consensus       361 dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        361 DLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence                     0111122356899999998876543 3  466666643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.06  E-value=4.3e-08  Score=76.12  Aligned_cols=122  Identities=14%  Similarity=0.095  Sum_probs=82.7

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEE-ecCC--CeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICT-GSDN--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t-~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      ..|++||+.+++... +..+.+.+.+++|+||++.|+. .+.+  ..|++||+.++..... ..               +
T Consensus       214 ~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~---------------~  276 (417)
T TIGR02800       214 PEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TN---------------G  276 (417)
T ss_pred             cEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC-CC---------------C
Confidence            579999998876543 3335566778999999987764 4444  3589999987654332 22               2


Q ss_pred             ecCeEEEEeCCCCcEEEEecc-cC--eE-------------EeeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEcccc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCV-DG--KV-------------DGHIDAIQSLSVSAIRESLVSVSVDG---TARVFEIAEF  199 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~-~~--~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~~~~  199 (216)
                      ........|+|+|+.|+..+. .+  .+             ..+...+....|+|+|++++.++.++   .|.+||+.++
T Consensus       277 ~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       277 PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            233445688999988765543 22  22             12334566789999999999887765   7889998764


Q ss_pred             c
Q 043942          200 R  200 (216)
Q Consensus       200 ~  200 (216)
                      .
T Consensus       357 ~  357 (417)
T TIGR02800       357 G  357 (417)
T ss_pred             C
Confidence            3

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.05  E-value=5.2e-08  Score=73.45  Aligned_cols=85  Identities=15%  Similarity=0.255  Sum_probs=65.0

Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      .+-++|.++++.. .+...-+.|.++..+|+|+.++.+.....+.+.|+.++.....-..               ..+-|
T Consensus       383 ~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS---------------~~~lI  446 (668)
T COG4946         383 KLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS---------------EYGLI  446 (668)
T ss_pred             eEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc---------------cccee
Confidence            6777777766543 3444667899999999999999999999999999999876544333               55667


Q ss_pred             EEEEeCCCCcEEEEecccCeE
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      +.+.|+|+++++|-+-.+|.+
T Consensus       447 tdf~~~~nsr~iAYafP~gy~  467 (668)
T COG4946         447 TDFDWHPNSRWIAYAFPEGYY  467 (668)
T ss_pred             EEEEEcCCceeEEEecCccee
Confidence            777888888877777666654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=9.4e-10  Score=86.41  Aligned_cols=161  Identities=13%  Similarity=0.204  Sum_probs=120.6

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD   93 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~   93 (216)
                      .....|++|+....++|.|+.||.++|..+.+...-....+-.           ...+-..-+++.+|.+.|..+.|+.+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla-----------a~snLsmNQtLeGH~~sV~vvTWNe~   82 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA-----------AASNLSMNQTLEGHNASVMVVTWNEN   82 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccc-----------cccccchhhhhccCcceEEEEEeccc
Confidence            3567899999999999999999999999887654222211100           01111223568899999999999999


Q ss_pred             CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------
Q 043942           94 GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------  163 (216)
Q Consensus        94 ~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------  163 (216)
                      .+.|-|...+|.|.+|-+-+|....+.....             ..+-|.+++|+.+|..+.....||.+          
T Consensus        83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnR-------------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI  149 (1189)
T KOG2041|consen   83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNR-------------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI  149 (1189)
T ss_pred             cccccccCCCceEEEEeeecccHHHHHhhCc-------------CccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence            9999999999999999998886544332211             45678999999999999888888877          


Q ss_pred             ---EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          164 ---DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       164 ---~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                         .-.......+.|++|.+.++.+-..|.++++|...
T Consensus       150 wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  150 WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             cchhcchheccceeecccHHHHHhhhcCCcEEEecccc
Confidence               11123456789999999888888889999998653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.01  E-value=7.8e-09  Score=74.66  Aligned_cols=150  Identities=14%  Similarity=0.172  Sum_probs=92.9

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEE-eCCCCcc------------------------cCcEEEE
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV-EGPRGGI------------------------EDSTVWM   66 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~~------------------------~~~~v~i   66 (216)
                      +|...|++++++.|++.++++. |=.|.+|+++-......+ ...+...                        +.|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            6889999999999999999887 778999998754333222 1111110                        8999999


Q ss_pred             EECCCccee------ee----------eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC-CCceeEEeecccccccc
Q 043942           67 WNADRGAYL------NM----------FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK-GGENFHAIRRSSLEFSL  129 (216)
Q Consensus        67 ~d~~~~~~~------~~----------~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~  129 (216)
                      .|++....-      ..          +..--..|..+.|+++|+++++-+. -+|++||+. ..+++..++...-....
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k  319 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK  319 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence            999843211      10          1111246889999999999988643 589999994 45666555541100000


Q ss_pred             cceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942          130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       130 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      -........-..-..++|+.++.++++|+.+..+
T Consensus       320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~f  353 (433)
T KOG1354|consen  320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVF  353 (433)
T ss_pred             HHHHhhccchhheeEEEEcCCcceEecccccceE
Confidence            0000000011122457888888888888877655

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=2.1e-09  Score=77.53  Aligned_cols=131  Identities=16%  Similarity=0.169  Sum_probs=89.5

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-   92 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-   92 (216)
                      ++.|.++.|...++++..|...|.|.++|++.+..                     ..+.+...+. |...|+++..-. 
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq---------------------G~~~~a~rly-h~Ssvtslq~Lq~  309 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ---------------------GNGWCAQRLY-HDSSVTSLQILQF  309 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc---------------------CCCcceEEEE-cCcchhhhhhhcc
Confidence            44566667776667777777666666666554310                     1133444554 889999998877 


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCce---eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeEEeeeCC
Q 043942           93 DGKTICTGSDNATLSIWNPKGGEN---FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDA  169 (216)
Q Consensus        93 ~~~~l~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~~~  169 (216)
                      ++++|++.+.+|+|++||++--+.   +..+.+               |.   +..                       .
T Consensus       310 s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG---------------Hv---N~~-----------------------a  348 (425)
T KOG2695|consen  310 SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG---------------HV---NLS-----------------------A  348 (425)
T ss_pred             ccceEeeccCcCceeEeeehhhhcccceeeeec---------------cc---ccc-----------------------c
Confidence            788999999999999999986554   444443               21   111                       1


Q ss_pred             EEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          170 IQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       170 i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      -.-+...+.+..++++++|...|||.+..+..+..+|.
T Consensus       349 ~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  349 YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             ccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            12234556777888899999999999999888776654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=1.1e-09  Score=83.72  Aligned_cols=165  Identities=14%  Similarity=0.238  Sum_probs=114.8

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCee
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLT   86 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~   86 (216)
                      +..+.||...|..++--.+.+-+++++.|.+|++|.++..-.                   .+.+..+..+++.|..+|.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-------------------~~~tsaCQfTY~aHkk~i~  788 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-------------------EIGTSACQFTYQAHKKPIH  788 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-------------------ccccceeeeEhhhccCccc
Confidence            456779999999988777778899999999999999864210                   1223456677889999999


Q ss_pred             EEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe-cccCeE--
Q 043942           87 CGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG-CVDGKV--  163 (216)
Q Consensus        87 ~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~i--  163 (216)
                      ++.|-.+.+.++++  |+.|.+||.--++.+......+.+          +....|.++. +-+...+..+ +.+.++  
T Consensus       789 ~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~----------~a~~~ikcl~-nv~~~iliAgcsaeSTVKl  855 (1034)
T KOG4190|consen  789 DIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE----------GAGGNIKCLE-NVDRHILIAGCSAESTVKL  855 (1034)
T ss_pred             ceeeeeccceeeec--cCcceeecccccchhHhhhcCccc----------CCCceeEecc-cCcchheeeeccchhhhee
Confidence            99999888888765  889999999888776544332211          0111222221 1133333333 334433  


Q ss_pred             -----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          164 -----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       164 -----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                                       .+...-+.+++..+.|+.++++-..|++.+-|.++++.+.
T Consensus       856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN  912 (1034)
T ss_pred             eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence                             2233567889999999999999889999999999888544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.98  E-value=8.3e-08  Score=72.71  Aligned_cols=101  Identities=8%  Similarity=0.009  Sum_probs=65.8

Q ss_pred             cCCCeeEEEEcCCCcEEEEe--cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           81 HGSGLTCGDFTTDGKTICTG--SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                      ..++|....|.|.++.+++.  -.+..+.++|++.. ....++.                 ..=+.+.|+|.+++++.++
T Consensus       273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe-----------------~~rNT~~fsp~~r~il~ag  334 (561)
T COG5354         273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE-----------------QKRNTIFFSPHERYILFAG  334 (561)
T ss_pred             ccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC-----------------cccccccccCcccEEEEec
Confidence            46789999999988776654  47888999999844 4444432                 2334455566666665554


Q ss_pred             ccCeE----------------EeeeCCEEEEEEecCCCeEEEEe------CCCcEEEEEcccc
Q 043942          159 VDGKV----------------DGHIDAIQSLSVSAIRESLVSVS------VDGTARVFEIAEF  199 (216)
Q Consensus       159 ~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~------~d~~v~vw~~~~~  199 (216)
                      -+..-                .-......-+.|+|+++++.+..      .|..++|||+...
T Consensus       335 F~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         335 FDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             CCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            43322                11123345568999999887653      3788999998653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.96  E-value=3.6e-09  Score=73.56  Aligned_cols=137  Identities=12%  Similarity=0.111  Sum_probs=84.6

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeC------------CCCcc---------cCcEEEEEEC
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEG------------PRGGI---------EDSTVWMWNA   69 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~------------~~~~~---------~~~~v~i~d~   69 (216)
                      .|.++-.+-+.+-.++.++++..||.+.+.+.+.-. ....+..            +...+         .-+..+.|++
T Consensus        87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~  166 (319)
T KOG4714|consen   87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTL  166 (319)
T ss_pred             ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecc
Confidence            344433333334456789999999999999876521 1111110            11111         2333444544


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCcee-EEeecccccccccceEEEeeeecCeEEEEe
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENF-HAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      +..+.+..-......|.+++-+|.. ..+++|+.||.+.+||.++.... ..+..               |..++..+.|
T Consensus       167 ~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a---------------hk~~i~eV~F  231 (319)
T KOG4714|consen  167 DPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA---------------HKAEIWEVHF  231 (319)
T ss_pred             cccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH---------------hhhhhhheec
Confidence            4222111111122348899999954 56678889999999999987433 23333               8899999999


Q ss_pred             CC-CCcEEEEecccCeE
Q 043942          148 PG-TSKYLVTGCVDGKV  163 (216)
Q Consensus       148 ~~-~~~~l~~~~~~~~i  163 (216)
                      +| ++..|+++++||.+
T Consensus       232 Hpk~p~~Lft~sedGsl  248 (319)
T KOG4714|consen  232 HPKNPEHLFTCSEDGSL  248 (319)
T ss_pred             cCCCchheeEecCCCcE
Confidence            98 67889999999988

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.96  E-value=1.5e-06  Score=65.76  Aligned_cols=172  Identities=17%  Similarity=0.164  Sum_probs=107.4

Q ss_pred             cceEEEEEccCCCEEEEEcC----CCcEEEEECCCC--c--eEEEEe-CCCCcc----------------cCcEEEEEEC
Q 043942           15 DSFSSLAFSTDGQLLASGGF----HGLVQNRDTSSR--N--LQCTVE-GPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~----d~~v~vwd~~~~--~--~~~~~~-~~~~~~----------------~~~~v~i~d~   69 (216)
                      .....++++|++++|.++..    ++.|..|++...  +  .+.... ....+.                .++.|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34567899999999988876    568988887764  2  222332 111111                7899999999


Q ss_pred             CC-cceeee---ee----------ccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCce-eEEeecccccccccceE
Q 043942           70 DR-GAYLNM---FS----------GHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWM  133 (216)
Q Consensus        70 ~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~  133 (216)
                      .. +.....   +.          .......++.++|+++++++.. ....|.+|++..... +......          
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~----------  186 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI----------  186 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE----------
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc----------
Confidence            86 332221   11          1124577999999999887754 445799999986552 2111100          


Q ss_pred             EEeeeecCeEEEEeCCCCcEEEEecc-cCeE------------------------EeeeCCEEEEEEecCCCeEEEEe-C
Q 043942          134 ICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV------------------------DGHIDAIQSLSVSAIRESLVSVS-V  187 (216)
Q Consensus       134 ~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i------------------------~~~~~~i~~~~~~~~~~~l~s~~-~  187 (216)
                       ........+.+.|+|+++++++..+ ++.+                        .........++++|||++|.++. .
T Consensus       187 -~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~  265 (345)
T PF10282_consen  187 -KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG  265 (345)
T ss_dssp             -ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred             -ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence             0014567899999999998776554 3434                        00112578899999999987765 4


Q ss_pred             CCcEEEEEcc
Q 043942          188 DGTARVFEIA  197 (216)
Q Consensus       188 d~~v~vw~~~  197 (216)
                      ++.|.+|++.
T Consensus       266 ~~sI~vf~~d  275 (345)
T PF10282_consen  266 SNSISVFDLD  275 (345)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCEEEEEEEe
Confidence            6889999994

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.96  E-value=1.1e-08  Score=82.25  Aligned_cols=152  Identities=14%  Similarity=0.243  Sum_probs=110.7

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT   91 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~   91 (216)
                      +..++-|+-...+..+|+++.+..+.......++              ..|+|.+-|.++.+.++++.+|.+.|..++. 
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv-  225 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV-  225 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence            3567777777778888888887776665555333              7899999999999999999999999887765 


Q ss_pred             CCCcEEEEecC---------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC-CcEEEEecccC
Q 043942           92 TDGKTICTGSD---------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKYLVTGCVDG  161 (216)
Q Consensus        92 ~~~~~l~t~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~  161 (216)
                       .|+.|++++.         |..|+|||++..+.+..+..               +.+ ..-+.|.|. ...+++++..|
T Consensus       226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---------------~~~-P~flrf~Psl~t~~~V~S~sG  288 (1118)
T KOG1275|consen  226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---------------PYG-PQFLRFHPSLTTRLAVTSQSG  288 (1118)
T ss_pred             -cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---------------ccC-chhhhhcccccceEEEEeccc
Confidence             5889998874         56699999998876655543               111 133344442 23344444444


Q ss_pred             eE------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          162 KV------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       162 ~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      ..                  ......+..++++++++.++.+..+|.|.+|.
T Consensus       289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            43                  22334589999999999999999999999998

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.95  E-value=3.7e-09  Score=90.35  Aligned_cols=104  Identities=11%  Similarity=0.216  Sum_probs=86.0

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc---ce
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG---AY   74 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~---~~   74 (216)
                      ..|+.+.|+.+|+.+..+..||.+.+|... .+.....++|....                 .++.+.+||....   ..
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccce
Confidence            678888899999999999999999999987 45555555555433                 7899999997532   23


Q ss_pred             eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEee
Q 043942           75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIR  121 (216)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~  121 (216)
                      +.  ..|.+.++++++.|..+.|++|+.+|.|++||++..+.++.++
T Consensus      2331 v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2331 VH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             ee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence            33  7899999999999999999999999999999999888777665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.94  E-value=1.1e-07  Score=73.08  Aligned_cols=113  Identities=14%  Similarity=0.130  Sum_probs=88.0

Q ss_pred             CCceeEEee--ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeec
Q 043942            3 QGDWASEIL--GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSG   80 (216)
Q Consensus         3 ~g~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~   80 (216)
                      .|+.-..+.  .|.+.|.++.++.+-..|.+++.|+.+..|+..+                          .+.+..+..
T Consensus        89 ~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~--------------------------~~~~~~~~~  142 (541)
T KOG4547|consen   89 GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE--------------------------KVIIRIWKE  142 (541)
T ss_pred             CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc--------------------------ceeeeeecc
Confidence            345555554  5888999999988888899999777766666553                          444445555


Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC-----CcEEE
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-----SKYLV  155 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~  155 (216)
                      ....+.++.++||+..+++++  +.|++||+++++.+..|++               |.++|+++.|...     |.++.
T Consensus       143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg---------------h~s~v~t~~f~~~~~g~~G~~vL  205 (541)
T KOG4547|consen  143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG---------------HGSPVRTLSFTTLIDGIIGKYVL  205 (541)
T ss_pred             CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC---------------CCcceEEEEEEEeccccccceee
Confidence            666788999999999999886  6799999999999999998               9999999999665     66666


Q ss_pred             Eec
Q 043942          156 TGC  158 (216)
Q Consensus       156 ~~~  158 (216)
                      ++.
T Consensus       206 ssa  208 (541)
T KOG4547|consen  206 SSA  208 (541)
T ss_pred             ecc
Confidence            543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.94  E-value=3e-06  Score=60.63  Aligned_cols=192  Identities=15%  Similarity=0.103  Sum_probs=113.5

Q ss_pred             CCCceeEEeeccccceEEEE--EccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEE
Q 043942            2 NQGDWASEILGHKDSFSSLA--FSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVW   65 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~--~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~   65 (216)
                      .+|+.+.+..- ........  ..+++..+++++.++.+..||..+|+.+..........              .++.++
T Consensus        11 ~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~   89 (238)
T PF13360_consen   11 RTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLY   89 (238)
T ss_dssp             TTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEE
T ss_pred             CCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeE
Confidence            46666666643 11111112  33356678888899999999999999988887633311              578999


Q ss_pred             EEECCCcceeeee-eccC---CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942           66 MWNADRGAYLNMF-SGHG---SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        66 i~d~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      .+|..+|+.+... ....   ..........++..++.+..++.+..+|+++|+.+............. ..    ....
T Consensus        90 ~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~----~~~~  164 (238)
T PF13360_consen   90 ALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP-IS----SFSD  164 (238)
T ss_dssp             EEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS---EE----EETT
T ss_pred             ecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc-ee----eecc
Confidence            9999999988774 3221   111222333347788888889999999999999987776522110000 00    0011


Q ss_pred             e-EEEEeCCCCcEEEEecccCeE-----------E-eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          142 V-TCLSWPGTSKYLVTGCVDGKV-----------D-GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       142 v-~~~~~~~~~~~l~~~~~~~~i-----------~-~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      + ..+.+. ++ .++.++.++.+           . .....+.. ....++..|+.++.++.+..||+++++..
T Consensus       165 ~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  165 INGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKPISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEECSS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             cccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEecCCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            1 122222 33 44444444422           1 11112222 13457777887779999999999998753

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.94  E-value=8.1e-08  Score=80.69  Aligned_cols=169  Identities=16%  Similarity=0.170  Sum_probs=108.6

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-cCcEEEE-E-------ECCCcce---------
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-EDSTVWM-W-------NADRGAY---------   74 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-~~~~v~i-~-------d~~~~~~---------   74 (216)
                      -...|.+++||||++.|+....++++.+-+ .+.+.+.+...+.... .+..|.+ |       .-..|+.         
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            346899999999999999999898887764 4455555444333221 0111110 0       0000110         


Q ss_pred             -----eeeeeccCCCeeEEEEcCCCcEEEEecC------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           75 -----LNMFSGHGSGLTCGDFTTDGKTICTGSD------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        75 -----~~~~~~~~~~v~~~~~~~~~~~l~t~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                           ...+. ....-..++|..||.++|+.+.      -+.++||+-+ |.....-..               ..+--.
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~---------------v~gLe~  260 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP---------------VDGLEG  260 (928)
T ss_pred             CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc---------------CCCccC
Confidence                 01122 3345678999999999998763      3679999965 664443332               223345


Q ss_pred             EEEeCCCCcEEEEeccc---CeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          144 CLSWPGTSKYLVTGCVD---GKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~~---~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      .++|.|.|++||+....   ..|                 ......|..+.|++|+..||..-.|. |.+|-..+..
T Consensus       261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             CccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            78999999999987651   112                 13346799999999999999876554 9999887643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.93  E-value=6.5e-07  Score=63.62  Aligned_cols=129  Identities=15%  Similarity=0.099  Sum_probs=93.0

Q ss_pred             cCcEEEEEECCCcceeeeeeccCC------CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeE--Eeecccccccccc
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGS------GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFH--AIRRSSLEFSLNY  131 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~  131 (216)
                      ..|.|.+|..........+++-..      ...++.|++.+..++++-.+|.+.+-+...+....  ..+.         
T Consensus        93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~---------  163 (339)
T KOG0280|consen   93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV---------  163 (339)
T ss_pred             ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc---------
Confidence            566666666554333333332211      23578889989999999999999866655454333  5555         


Q ss_pred             eEEEeeeecCeEEEEeCC-CCcEEEEecccCeE----------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEE
Q 043942          132 WMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV----------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARV  193 (216)
Q Consensus       132 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~v  193 (216)
                            |..+..-..|+. +.+.+++|++|+.+                +.|...|.++.-+| .+.++++|+.|-.|++
T Consensus       164 ------He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~  237 (339)
T KOG0280|consen  164 ------HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV  237 (339)
T ss_pred             ------cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence                  888888888865 45788999999988                67888899988876 4779999999999999


Q ss_pred             EEccc-cccee
Q 043942          194 FEIAE-FRRAT  203 (216)
Q Consensus       194 w~~~~-~~~~~  203 (216)
                      ||.++ ++++.
T Consensus       238 ~DtRnm~kPl~  248 (339)
T KOG0280|consen  238 LDTRNMGKPLF  248 (339)
T ss_pred             eehhcccCccc
Confidence            99996 44443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.92  E-value=6.7e-07  Score=62.87  Aligned_cols=163  Identities=12%  Similarity=0.038  Sum_probs=115.7

Q ss_pred             CEEEEEcCCCcEEEEECCCCceEE-EEeCCCCcc-----------------cCcEEEEEECCCcceeeeeeccCC--Cee
Q 043942           27 QLLASGGFHGLVQNRDTSSRNLQC-TVEGPRGGI-----------------EDSTVWMWNADRGAYLNMFSGHGS--GLT   86 (216)
Q Consensus        27 ~~l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~--~v~   86 (216)
                      .+||.|+..|...+|...+.+... ....+...+                 .|.++++.++.-+.....  .|..  .+.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~n  162 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQN  162 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce--eecccccee
Confidence            479999999999999998765433 223333322                 667777777654322211  1332  378


Q ss_pred             EEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942           87 CGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--  163 (216)
Q Consensus        87 ~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--  163 (216)
                      +++++++++++++.++...|..|.+..... +..+...+             ..+.-.+..|+.....+|++..||.+  
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~-------------t~D~gF~~S~s~~~~~FAv~~Qdg~~~I  229 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP-------------TSDHGFYNSFSENDLQFAVVFQDGTCAI  229 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc-------------cCCCceeeeeccCcceEEEEecCCcEEE
Confidence            999999999999999999999999875432 22222111             45666788999999999999999988  


Q ss_pred             -----------------EeeeCCEEEEEEecCCC--eEEEEeCCCcEEEEEcccccceee
Q 043942          164 -----------------DGHIDAIQSLSVSAIRE--SLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       164 -----------------~~~~~~i~~~~~~~~~~--~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                                       ..|.+.+..+.|++.|.  +|+..-.-+.+++-|+++.+..+.
T Consensus       230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence                             45789999999998663  455454567899999998776543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.91  E-value=3.4e-06  Score=60.85  Aligned_cols=167  Identities=14%  Similarity=0.088  Sum_probs=107.3

Q ss_pred             EEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeC---------CCCcc---cCcEEEEEECCCcceeeeeec-----
Q 043942           19 SLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEG---------PRGGI---EDSTVWMWNADRGAYLNMFSG-----   80 (216)
Q Consensus        19 ~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---------~~~~~---~~~~v~i~d~~~~~~~~~~~~-----   80 (216)
                      ++.|.+ ++.++++--..+.|..|+..+++....-..         .....   ..+.+.++|+.+++.......     
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~   83 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGV   83 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCS
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCc
Confidence            578888 667777777788999999888755331111         11111   445556668887754433332     


Q ss_pred             cCCCeeEEEEcCCCcEEEEecCC--------CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDN--------ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      .....+.+++.|+|++.++....        +.+..++.. ++......                .-...+.++|+|+++
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----------------~~~~pNGi~~s~dg~  146 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----------------GLGFPNGIAFSPDGK  146 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE----------------EESSEEEEEEETTSS
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec----------------CcccccceEECCcch
Confidence            33567899999999987776543        567777777 55333332                455678999999998


Q ss_pred             EEEE-ecccCeE-----------------E--eee--CCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          153 YLVT-GCVDGKV-----------------D--GHI--DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       153 ~l~~-~~~~~~i-----------------~--~~~--~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      .|+. -+..+.|                 .  ...  +..-.++++.+|++.++.-..+.|.+++.. ++...
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~  218 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR  218 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred             heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence            7664 4555555                 0  011  136789999999988887788999999977 66544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.90  E-value=2.9e-06  Score=61.94  Aligned_cols=175  Identities=14%  Similarity=0.134  Sum_probs=115.6

Q ss_pred             ccccceEEEEEccCCCEEEEEcCC---CcEEEEECCC--CceEEEE----eCCCCcc---------------cCcEEEEE
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFH---GLVQNRDTSS--RNLQCTV----EGPRGGI---------------EDSTVWMW   67 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d---~~v~vwd~~~--~~~~~~~----~~~~~~~---------------~~~~v~i~   67 (216)
                      .+.+.++-|+|+|+++.|.++..+   |.|-.|.+..  |+....-    .++..+-               ..+.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            456678899999999999888654   6777776654  4433221    1111111               67788888


Q ss_pred             ECCC-cce---eeeeeccCCC----------eeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccce
Q 043942           68 NADR-GAY---LNMFSGHGSG----------LTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYW  132 (216)
Q Consensus        68 d~~~-~~~---~~~~~~~~~~----------v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  132 (216)
                      -+++ |..   +..+ .|.+.          +....+.|++++|++.+ .-..|.+|++..|+....-...-        
T Consensus       117 p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--------  187 (346)
T COG2706         117 PLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--------  187 (346)
T ss_pred             EcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--------
Confidence            8865 322   2222 24444          88899999999998876 33469999999776533222100        


Q ss_pred             EEEeeeecCeEEEEeCCCCcEEEEecc-cCeE------------------------EeeeCCEEEEEEecCCCeEEEEeC
Q 043942          133 MICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV------------------------DGHIDAIQSLSVSAIRESLVSVSV  187 (216)
Q Consensus       133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i------------------------~~~~~~i~~~~~~~~~~~l~s~~~  187 (216)
                          ......+.+.|+|++++.++.++ ++.|                        .....+...+..+|||++|.++..
T Consensus       188 ----~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         188 ----KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             ----CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence                14567899999999998776544 5554                        122346678899999999988754


Q ss_pred             -CCcEEEEEcccc
Q 043942          188 -DGTARVFEIAEF  199 (216)
Q Consensus       188 -d~~v~vw~~~~~  199 (216)
                       ...|-+|.+...
T Consensus       264 g~dsI~~f~V~~~  276 (346)
T COG2706         264 GHDSIAVFSVDPD  276 (346)
T ss_pred             CCCeEEEEEEcCC
Confidence             357778877653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.90  E-value=1.2e-06  Score=66.43  Aligned_cols=161  Identities=12%  Similarity=0.162  Sum_probs=114.4

Q ss_pred             EccCCCEEEEEcCCCcEEEEECCCCceEEE-EeCCCC-----cc----------------------cCcEEEEEECCCcc
Q 043942           22 FSTDGQLLASGGFHGLVQNRDTSSRNLQCT-VEGPRG-----GI----------------------EDSTVWMWNADRGA   73 (216)
Q Consensus        22 ~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~-----~~----------------------~~~~v~i~d~~~~~   73 (216)
                      .+.||+.++-. ..|.|.+||..+.+..+. +..+..     ..                      +.|...+.+...+.
T Consensus       274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~  352 (668)
T COG4946         274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY  352 (668)
T ss_pred             cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence            34577666543 467899999887654332 111111     00                      55555555555444


Q ss_pred             eeeeeeccCCCeeEEEEcCCCcEEEEecCCC-eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNA-TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      .++.  +|.+.|.-..+..+++-++.|..|| .+-++|.++++......                .-+.|.++..+|+|+
T Consensus       353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~----------------~lg~I~av~vs~dGK  414 (668)
T COG4946         353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK----------------DLGNIEAVKVSPDGK  414 (668)
T ss_pred             eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC----------------CccceEEEEEcCCCc
Confidence            3322  4667788888888888899999998 89999999776544333                567899999999999


Q ss_pred             EEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCC----CcEEEEEcccccc
Q 043942          153 YLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVD----GTARVFEIAEFRR  201 (216)
Q Consensus       153 ~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d----~~v~vw~~~~~~~  201 (216)
                      +++++.....+              +...+-|+.+.|||+++++|-+--+    ..|+++|+..++.
T Consensus       415 ~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         415 KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            99999887776              3445679999999999999976555    4789999987664

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=3.2e-07  Score=71.30  Aligned_cols=130  Identities=17%  Similarity=0.216  Sum_probs=76.3

Q ss_pred             cccceEEEEEccCCCEEEEEcC-----CCcEEEEECCCC---ceEEEEeCCCC---c-c-------------cCc--EEE
Q 043942           13 HKDSFSSLAFSTDGQLLASGGF-----HGLVQNRDTSSR---NLQCTVEGPRG---G-I-------------EDS--TVW   65 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~-----d~~v~vwd~~~~---~~~~~~~~~~~---~-~-------------~~~--~v~   65 (216)
                      ..+.....+|||||+.|+..+.     +-.+..|++..+   +..........   . .             .++  .++
T Consensus       229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence            3445567899999998886553     223445776642   22222211111   0 1             233  344


Q ss_pred             EEECCC-cceeeeeeccCCCeeEEEEcCCCcEEEEecCC---CeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942           66 MWNADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN---ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        66 i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      ++++.. +.....+..+...+....|+|||+.|+..+.+   ..|.+||+.+++......                ....
T Consensus       309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----------------~~~~  372 (428)
T PRK01029        309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----------------SPEN  372 (428)
T ss_pred             EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----------------CCCC
Confidence            444432 22233444444567789999999988876543   469999999886543322                2234


Q ss_pred             eEEEEeCCCCcEEEEec
Q 043942          142 VTCLSWPGTSKYLVTGC  158 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~  158 (216)
                      +....|+|||+.|+...
T Consensus       373 ~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        373 KESPSWAIDSLHLVYSA  389 (428)
T ss_pred             ccceEECCCCCEEEEEE
Confidence            56789999999877543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.90  E-value=1.2e-06  Score=63.89  Aligned_cols=150  Identities=14%  Similarity=0.152  Sum_probs=97.4

Q ss_pred             eEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942           17 FSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK   95 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~   95 (216)
                      +.+..+.|++++|++.+. --.|.+|++.++.....                      ....+ ......+-|.|+|+++
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~----------------------~~~~v-~~G~GPRHi~FHpn~k  203 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA----------------------DPAEV-KPGAGPRHIVFHPNGK  203 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccc----------------------ccccc-CCCCCcceEEEcCCCc
Confidence            788899999998888763 22455555543332111                      01112 2445678999999999


Q ss_pred             EEEEec-CCCeEEEEeCCCC-ce---eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe-E------
Q 043942           96 TICTGS-DNATLSIWNPKGG-EN---FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK-V------  163 (216)
Q Consensus        96 ~l~t~~-~d~~i~~wd~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-i------  163 (216)
                      +....+ -+++|.+|..... ..   ++.+..-+..+.         ......++..+++|++|+++..-.. |      
T Consensus       204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~---------g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT---------GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC---------CCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            886655 6899999998874 22   222221111111         3445677888999999988765322 2      


Q ss_pred             ------------EeeeCCEEEEEEecCCCeEEEEeCC-CcEEEEEccc
Q 043942          164 ------------DGHIDAIQSLSVSAIRESLVSVSVD-GTARVFEIAE  198 (216)
Q Consensus       164 ------------~~~~~~i~~~~~~~~~~~l~s~~~d-~~v~vw~~~~  198 (216)
                                  ..+......+.++|.|++|+++.++ ..|.+|....
T Consensus       275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence                        2333446889999999999988875 5789998765

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=8.9e-08  Score=76.22  Aligned_cols=138  Identities=20%  Similarity=0.267  Sum_probs=102.8

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG   94 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~   94 (216)
                      +.++|++++  ++.|+-|.-+|.|++.+..                           +.+ .+...|...      ..+|
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~---------------------------~~~-~~~~~~s~~------~~~G   83 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ---------------------------GNP-KTNFDHSSS------ILEG   83 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecC---------------------------Ccc-ccccccccc------ccCC
Confidence            445666665  4688888877777666643                           111 222234332      5579


Q ss_pred             cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC-----CcEEEEecccCeE------
Q 043942           95 KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-----SKYLVTGCVDGKV------  163 (216)
Q Consensus        95 ~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~~~i------  163 (216)
                      .++++|+.||+|.+-.+.+.+....+.                ...++.+++++|+     .+.+++|+..|.+      
T Consensus        84 ey~asCS~DGkv~I~sl~~~~~~~~~d----------------f~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~w  147 (846)
T KOG2066|consen   84 EYVASCSDDGKVVIGSLFTDDEITQYD----------------FKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNW  147 (846)
T ss_pred             ceEEEecCCCcEEEeeccCCccceeEe----------------cCCcceeEEeccchhhhhhhheeecCcceEEEehhhh
Confidence            999999999999999999888887776                5678999999997     5678899988855      


Q ss_pred             ---------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          164 ---------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       164 ---------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                               ....++|.++.|  .|+++|-++.+| |+|||+...+.+..+|.
T Consensus       148 lgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  148 LGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             hcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCC
Confidence                     344689999999  788888887665 79999998887765543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.86  E-value=8.8e-07  Score=75.83  Aligned_cols=172  Identities=12%  Similarity=0.076  Sum_probs=102.2

Q ss_pred             eEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942           17 FSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK   95 (216)
Q Consensus        17 v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~   95 (216)
                      .+.++++| ++.++++.+.++.|++||..++... .+.+      ++.....+   +.. . ....-.....++++|+++
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G------~G~~~~~~---g~~-~-~~~~~~~P~GIavspdG~  752 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG------DGYERNLN---GSS-G-TSTSFAQPSGISLSPDLK  752 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec------CCccccCC---CCc-c-ccccccCccEEEEeCCCC
Confidence            35789999 5666777777889999998665432 1111      01000000   000 0 001123467899999988


Q ss_pred             EE-EEecCCCeEEEEeCCCCceeEEeeccccc------cc-ccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----
Q 043942           96 TI-CTGSDNATLSIWNPKGGENFHAIRRSSLE------FS-LNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----  163 (216)
Q Consensus        96 ~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----  163 (216)
                      .| ++-+.++.|++||+.++............      +. ..... ....-.....++++++|..+++-..++.|    
T Consensus       753 ~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g-~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD  831 (1057)
T PLN02919        753 ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG-SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD  831 (1057)
T ss_pred             EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch-hhhhccCCceeeEeCCCcEEEEECCCCEEEEEE
Confidence            54 55567799999999876532211110000      00 00000 00011234578889999887777777776    


Q ss_pred             ---------Ee--------------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          164 ---------DG--------------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       164 ---------~~--------------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                               .+              .-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus       832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                     00              112467899999999888888899999999988654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=8.8e-08  Score=73.26  Aligned_cols=103  Identities=15%  Similarity=0.248  Sum_probs=79.1

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD   93 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~   93 (216)
                      .++|.++.|+|+|+.|+.+-.-                        .-..+.+||++ +.++..+  ..++-+++-|+|.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGf------------------------MPAkvtifnlr-~~~v~df--~egpRN~~~fnp~  322 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGF------------------------MPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH  322 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEec------------------------ccceEEEEcCC-CCEeEeC--CCCCccceEECCC
Confidence            6899999999999887765421                        34556666665 4444443  4566789999999


Q ss_pred             CcEEEEecC---CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           94 GKTICTGSD---NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        94 ~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      |++++.++.   -|.|-+||+.+.+.+..+..                 ..-+-+.|+|||++|+++..-
T Consensus       323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----------------~~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----------------ANTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             CCEEEEeecCCCCCceEEEeccchhhcccccc-----------------CCceEEEEcCCCcEEEEEecc
Confidence            999998874   48899999999888877754                 445678999999999998765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=1.9e-07  Score=71.71  Aligned_cols=98  Identities=14%  Similarity=0.206  Sum_probs=66.6

Q ss_pred             CCeeEEEEcCCCcEEEEec---CCCeEEEEeCCC-Cc---eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           83 SGLTCGDFTTDGKTICTGS---DNATLSIWNPKG-GE---NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~---~d~~i~~wd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                      ..|...+|.|.|+.+++-+   ...++.+|.+++ ..   .+..+                 .....+.+.|+|.|++++
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-----------------dk~~~N~vfwsPkG~fvv  508 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-----------------DKKFANTVFWSPKGRFVV  508 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-----------------cccccceEEEcCCCcEEE
Confidence            4577889999998776654   345678887773 21   12222                 234567899999999988


Q ss_pred             Eecc---cCeE---------------EeeeCCEEEEEEecCCCeEEEEeC------CCcEEEEEccc
Q 043942          156 TGCV---DGKV---------------DGHIDAIQSLSVSAIRESLVSVSV------DGTARVFEIAE  198 (216)
Q Consensus       156 ~~~~---~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~------d~~v~vw~~~~  198 (216)
                      .+..   .|.+               ..| ...+.+.|+|.|+|+++++.      |.--++|++..
T Consensus       509 va~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  509 VAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             EEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            7644   4444               222 34578999999999999874      45567887753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=8.7e-07  Score=68.62  Aligned_cols=144  Identities=13%  Similarity=0.075  Sum_probs=83.4

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT   92 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~   92 (216)
                      ..+......|+|||+.++......                       .+..|+++|+.++.. ..+..+........|+|
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~-----------------------g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SP  286 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPK-----------------------GQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVE  286 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccC-----------------------CCcEEEEEECCCCcE-EEcccCCCccCccEECC
Confidence            444455677888887666443211                       345677777766653 33443443344568999


Q ss_pred             CCcEEEEecC-CC--eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC--------
Q 043942           93 DGKTICTGSD-NA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG--------  161 (216)
Q Consensus        93 ~~~~l~t~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------  161 (216)
                      ||+.|+..+. .+  .|.+.|+.+++.......                ..  ....|+|+|+.++......        
T Consensus       287 DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----------------g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~  348 (419)
T PRK04043        287 DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----------------GK--NNSSVSTYKNYIVYSSRETNNEFGKNT  348 (419)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCeEeCccC----------------CC--cCceECCCCCEEEEEEcCCCcccCCCC
Confidence            9988776653 22  588888887665333221                11  1237899999877655432        


Q ss_pred             -eE------------EeeeCCEEEEEEecCCCeEEEEeCC-C--cEEEEEccc
Q 043942          162 -KV------------DGHIDAIQSLSVSAIRESLVSVSVD-G--TARVFEIAE  198 (216)
Q Consensus       162 -~i------------~~~~~~i~~~~~~~~~~~l~s~~~d-~--~v~vw~~~~  198 (216)
                       .+            ...........|+|||+.|+..+.+ +  .+.+.++..
T Consensus       349 ~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        349 FNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             cEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence             23            0001123357899999988765543 3  355666644

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.82  E-value=1.2e-08  Score=74.83  Aligned_cols=89  Identities=20%  Similarity=0.323  Sum_probs=70.7

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEE
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCG   88 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~   88 (216)
                      .+-||-.-++.++|+||++.++++..|..|+|-.......                    ++     .-+-||..-|..+
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--------------------Ie-----sfclGH~eFVS~i  200 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--------------------IE-----SFCLGHKEFVSTI  200 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--------------------hh-----hhccccHhheeee
Confidence            4458999999999999999999999999888765442211                    11     1234799999999


Q ss_pred             EEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecc
Q 043942           89 DFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRS  123 (216)
Q Consensus        89 ~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~  123 (216)
                      +.-++ ..|++++.|+++++||+++|+.+..+...
T Consensus       201 sl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  201 SLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDLS  234 (390)
T ss_pred             eeccC-ceeeecCCCCcEEEEecccCCcccccchh
Confidence            98764 56999999999999999999998777653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=1e-08  Score=78.69  Aligned_cols=118  Identities=19%  Similarity=0.274  Sum_probs=90.9

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC-CCCc--------------------ccC
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-PRGG--------------------IED   61 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~--------------------~~~   61 (216)
                      +..+..+++.|+.+|.++.|-.+-++++++  ||.+++||.--+..+..... +..+                    ...
T Consensus       773 tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae  850 (1034)
T KOG4190|consen  773 TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE  850 (1034)
T ss_pred             cceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch
Confidence            445778889999999999999988888775  67899999876655442221 1111                    167


Q ss_pred             cEEEEEECCCcceeeeee-----ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           62 STVWMWNADRGAYLNMFS-----GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .+|+++|.+.......++     +.++.+.+++..+.|+.++.+-..|.|.+.|.++|+.+.....
T Consensus       851 STVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  851 STVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             hhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence            889999998776554443     4556789999999999999999999999999999997776554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=4.4e-08  Score=73.80  Aligned_cols=191  Identities=16%  Similarity=0.199  Sum_probs=124.0

Q ss_pred             EEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeC--CCCc--c-------------------cCcE
Q 043942            8 SEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGG--I-------------------EDST   63 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~--~-------------------~~~~   63 (216)
                      ..+..|.++|.-++.-|+. ..|.+++.|+.+.-.|++.......+..  ....  +                   .+-.
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf  305 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF  305 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence            3455799999999999966 5699999999999999887643322211  1111  0                   5666


Q ss_pred             EEEEECCCcce------eeeee------ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccc
Q 043942           64 VWMWNADRGAY------LNMFS------GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNY  131 (216)
Q Consensus        64 v~i~d~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  131 (216)
                      +++||.+.-..      +.++.      ...-.|++++|+.++.-++++..|-.|+++.-.-+.-....+.....  ...
T Consensus       306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~--~~~  383 (559)
T KOG1334|consen  306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPRE--QYV  383 (559)
T ss_pred             hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchh--hcc
Confidence            78888764221      12221      12346899999988888888888889999954322110000000000  000


Q ss_pred             eEEEeeee--cCeEEEEe-CCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          132 WMICTSLY--DGVTCLSW-PGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       132 ~~~~~~~~--~~v~~~~~-~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                      ..+..+|.  ..|..+-| .|...|+++|+..|.|              .+...-|.++.=+|.-..||++|-|..|+||
T Consensus       384 k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW  463 (559)
T KOG1334|consen  384 KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW  463 (559)
T ss_pred             chhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence            01111232  33666655 7899999999999998              3334478888889999999999999999999


Q ss_pred             Eccccc
Q 043942          195 EIAEFR  200 (216)
Q Consensus       195 ~~~~~~  200 (216)
                      -..+.+
T Consensus       464 TP~~~e  469 (559)
T KOG1334|consen  464 TPLTAE  469 (559)
T ss_pred             cCCccc
Confidence            874433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=3.4e-08  Score=73.77  Aligned_cols=173  Identities=16%  Similarity=0.111  Sum_probs=121.3

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeC---CCC---------cc--------cCcE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEG---PRG---------GI--------EDST   63 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~---~~~---------~~--------~~~~   63 (216)
                      +.+..+..|...|.+++.+-+|.++.|.+. |..++++|+++-....-++.   +..         .+        .++.
T Consensus        44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~  123 (558)
T KOG0882|consen   44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK  123 (558)
T ss_pred             eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence            345667788899999999999999999777 99999999887544422211   111         00        7888


Q ss_pred             EEEEECCCcc--eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942           64 VWMWNADRGA--YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        64 v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      +.++|-....  ....-.-|..+|.++.++|.+..+++....|.|..|....   ...++.                   
T Consensus       124 i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~---~~qfPr-------------------  181 (558)
T KOG0882|consen  124 IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG---PFQFPR-------------------  181 (558)
T ss_pred             cEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC---cccCcc-------------------
Confidence            8999977433  2233345889999999999999999999999999998773   111111                   


Q ss_pred             eEEEEeCCCCcEEEEecccCeEEeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          142 VTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                       ..+.|.+.....+.+.     ........++.|+|+|..+.+-+.|..|+++.+++++..+.+
T Consensus       182 -~~l~~~~K~eTdLy~f-----~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  182 -TNLNFELKHETDLYGF-----PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             -ccccccccccchhhcc-----cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence             1122222211111110     223456789999999999999999999999999998876554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.74  E-value=4.3e-07  Score=70.30  Aligned_cols=79  Identities=16%  Similarity=0.064  Sum_probs=62.2

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT   91 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~   91 (216)
                      .....|.|++++|+.+.|+.|+.||.|.+||...+.                            ..+....-.++.++|+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----------------------------t~~~ka~~~P~~iaWH  308 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----------------------------TLLAKAEFIPTLIAWH  308 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----------------------------eeeeeecccceEEEEc
Confidence            466789999999999999999988888888865331                            1111234457899999


Q ss_pred             CCCcEEEEecCCCeEEEEeCCCCceeE
Q 043942           92 TDGKTICTGSDNATLSIWNPKGGENFH  118 (216)
Q Consensus        92 ~~~~~l~t~~~d~~i~~wd~~~~~~~~  118 (216)
                      |+|..+++|+..|.+.+||+.-.....
T Consensus       309 p~gai~~V~s~qGelQ~FD~ALspi~~  335 (545)
T PF11768_consen  309 PDGAIFVVGSEQGELQCFDMALSPIKM  335 (545)
T ss_pred             CCCcEEEEEcCCceEEEEEeecCccce
Confidence            999999999999999999998554433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=8e-09  Score=83.20  Aligned_cols=180  Identities=14%  Similarity=0.211  Sum_probs=126.3

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------cCcE------------EEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------EDST------------VWM   66 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------~~~~------------v~i   66 (216)
                      +.+++++.|....+|++|+-+.+.|+.|+-.|.|++++..+|.......+|..++      .||.            ..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            4567788899999999999999999999999999999999999999998888876      3333            345


Q ss_pred             EECC-CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           67 WNAD-RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        67 ~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      |++. ++.+.+++..    -.++.|+.....-+.|+......+||+.++....++-.....           ..-.-+..
T Consensus      1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~-----------~~y~~n~a 1236 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT-----------SSYSNNLA 1236 (1516)
T ss_pred             hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh-----------hhhhcccc
Confidence            6654 3344444432    357788775555555665567999999999877664321111           12223677


Q ss_pred             EeCCCCcEEEEecccCeE------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942          146 SWPGTSKYLVTGCVDGKV------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSY  208 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~  208 (216)
                      .|+|+...++   .||.+            .... --..-.|+|+|..++.-+     -|||+++++.+...|..
T Consensus      1237 ~FsP~D~LIl---ndGvLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1237 HFSPCDTLIL---NDGVLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred             ccCCCcceEe---eCceeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc
Confidence            8999888775   45555            1111 112346899998888765     48999998887766653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=1.1e-07  Score=75.17  Aligned_cols=176  Identities=15%  Similarity=0.132  Sum_probs=110.2

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--------------CC--cc--cCcEEEEEE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--------------RG--GI--EDSTVWMWN   68 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--------------~~--~~--~~~~v~i~d   68 (216)
                      -+++.||.+.|.-+.|+.+.+.|-|...+|.|.||-+..+......-..              ..  ++  .||.|.+=.
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            4678999999999999999999999999999999998766322111111              11  11  455554444


Q ss_pred             CCCccee-eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           69 ADRGAYL-NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        69 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      +...+.- ..++  ......+.|++|.+.++.+-..|.+.++|.... ....+......   +....+......+..+.|
T Consensus       144 vdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~V---n~tg~~s~~~~kia~i~w  217 (1189)
T KOG2041|consen  144 VDGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEV---NGTGIFSNFPTKIAEIEW  217 (1189)
T ss_pred             eccceecchhcc--hheccceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEE---eeeeeecCCCccccceee
Confidence            3322111 0111  123457889999998888888999999997632 11111110000   000011112223445555


Q ss_pred             --------CCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942          148 --------PGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVD  188 (216)
Q Consensus       148 --------~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d  188 (216)
                              .|+...++++..+|.+             ......+..+.|+++|..|+.|+.|
T Consensus       218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence                    3578889999999887             2233678999999999999998864

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.66  E-value=7.5e-06  Score=69.22  Aligned_cols=169  Identities=16%  Similarity=0.278  Sum_probs=101.3

Q ss_pred             cccceEEEEEccCCCEEEEEcC------CCcEEEEECCCCceEEEEeCCCCcc--------------------cCcEEEE
Q 043942           13 HKDSFSSLAFSTDGQLLASGGF------HGLVQNRDTSSRNLQCTVEGPRGGI--------------------EDSTVWM   66 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~~--------------------~~~~v~i   66 (216)
                      +.+.-..++|-.||++||+.+.      -..+|||+-+ |+...+-+ +..+.                    ....|.+
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF  285 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVF  285 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence            3445568999999999998874      2578999976 43322222 11110                    3455566


Q ss_pred             EECCC---cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecC
Q 043942           67 WNADR---GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        67 ~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      |.-+.   |+....+......|..+.|++|+..||....|. |.+|-..+-.-  .+++....              ...
T Consensus       286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~--------------~~~  350 (928)
T PF04762_consen  286 FERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS--------------SES  350 (928)
T ss_pred             EecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC--------------CCC
Confidence            65432   221122223456799999999999999977665 99999887542  33333211              111


Q ss_pred             eEEEEeCCCC-cEEEEecccCeE-------------------------------------------------EeeeCCEE
Q 043942          142 VTCLSWPGTS-KYLVTGCVDGKV-------------------------------------------------DGHIDAIQ  171 (216)
Q Consensus       142 v~~~~~~~~~-~~l~~~~~~~~i-------------------------------------------------~~~~~~i~  171 (216)
                      +..+.|+|.. ..|...+.+|.+                                                 .....+|.
T Consensus       351 ~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~  430 (928)
T PF04762_consen  351 VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVN  430 (928)
T ss_pred             CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcE
Confidence            1223333321 112222221111                                                 33457899


Q ss_pred             EEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          172 SLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       172 ~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      +++|++++..+++-..||.+.+|....
T Consensus       431 ~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  431 DVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             EEEEeCCCCeEEEEECCCCEEEEEecC
Confidence            999999998888888999999998544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=2.3e-06  Score=68.47  Aligned_cols=108  Identities=20%  Similarity=0.300  Sum_probs=85.8

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------------------cCcEE
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------------------EDSTV   64 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------------------~~~~v   64 (216)
                      |...-.++.|+|.| +||-|+ ...|.+-|..+.+.++.++.|...+                            -.|.|
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             CcccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            33446688999977 666666 5578899999988888888777654                            67899


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcC---CC-cEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTT---DG-KTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .+||...+..+..+..|...+..+.|-+   +. ..|+.-....++-+|+..+|...-....
T Consensus        92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y  153 (1062)
T KOG1912|consen   92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY  153 (1062)
T ss_pred             EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence            9999999888888888889999999976   33 4677777888999999999987765554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=4.8e-07  Score=69.55  Aligned_cols=144  Identities=19%  Similarity=0.257  Sum_probs=99.4

Q ss_pred             EEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942           18 SSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI   97 (216)
Q Consensus        18 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   97 (216)
                      +-+.|||-|.||+|--.-|                           |.+|--.....++.+. |.+ |.-+.|||+.++|
T Consensus       214 tyv~wSP~GTYL~t~Hk~G---------------------------I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYL  264 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG---------------------------IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYL  264 (698)
T ss_pred             eeEEecCCceEEEEEeccc---------------------------eeeecCccHHHHHhcc-CCC-ceeeecCCccceE
Confidence            4678999999999977544                           4455555555555665 766 8899999999999


Q ss_pred             EEecC-----------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---
Q 043942           98 CTGSD-----------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---  163 (216)
Q Consensus        98 ~t~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---  163 (216)
                      +|=+.           ...+.+||+++|.....+.....            ....-.-+.||.|++++|....++..   
T Consensus       265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~------------~~~~WP~frWS~DdKy~Arm~~~sisIyE  332 (698)
T KOG2314|consen  265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS------------PYLKWPIFRWSHDDKYFARMTGNSISIYE  332 (698)
T ss_pred             EEecCCccccCcccCCCceEEEEEccccchhcceeccCC------------CccccceEEeccCCceeEEeccceEEEEe
Confidence            98552           26799999999998887765110            11112346899999999988777654   


Q ss_pred             ----------EeeeCCEEEEEEecCCCeEEEEeCC-----CcEEEEEcccccce
Q 043942          164 ----------DGHIDAIQSLSVSAIRESLVSVSVD-----GTARVFEIAEFRRA  202 (216)
Q Consensus       164 ----------~~~~~~i~~~~~~~~~~~l~s~~~d-----~~v~vw~~~~~~~~  202 (216)
                                .-.-..|....|+|.++.||--...     ..+.+-.+.+.+.+
T Consensus       333 tpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i  386 (698)
T KOG2314|consen  333 TPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI  386 (698)
T ss_pred             cCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence                      2234578899999999888854321     34455555544433

>smart00320 WD40 WD40 repeats

Probab=98.53  E-value=3.9e-07  Score=44.81  Aligned_cols=39  Identities=36%  Similarity=0.572  Sum_probs=35.7

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRD   42 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd   42 (216)
                      ++++..+..|...|.++.|+++++++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            567888899999999999999999999999999999986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.51  E-value=0.00019  Score=54.05  Aligned_cols=154  Identities=8%  Similarity=-0.056  Sum_probs=96.9

Q ss_pred             CcEEEEECCCCceEEEEeCCCCcc------------------------cCcEEEEEECCCcceeeeeeccC-------CC
Q 043942           36 GLVQNRDTSSRNLQCTVEGPRGGI------------------------EDSTVWMWNADRGAYLNMFSGHG-------SG   84 (216)
Q Consensus        36 ~~v~vwd~~~~~~~~~~~~~~~~~------------------------~~~~v~i~d~~~~~~~~~~~~~~-------~~   84 (216)
                      +.|.+.|..+++.+.++.....+.                        .+..|.+||..+.+.+..+....       ..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~  106 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY  106 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence            789999999998888776532221                        57889999999999988876422       22


Q ss_pred             eeEEEEcCCCcEEEEec-C-CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE-EecccC
Q 043942           85 LTCGDFTTDGKTICTGS-D-NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV-TGCVDG  161 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~-~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~  161 (216)
                      ...++++|||+++++.. . +..|.+.|+.+++.+.++.....    ....    ....-..+....||..+. +-..+|
T Consensus       107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~----~~vy----~t~e~~~~~~~~Dg~~~~v~~d~~g  178 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC----YHIF----PTANDTFFMHCRDGSLAKVGYGTKG  178 (352)
T ss_pred             cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC----cEEE----EecCCccEEEeecCceEEEEecCCC
Confidence            34789999999998776 4 79999999999999988875211    1000    011112223345555443 223333


Q ss_pred             eEEeeeCCEE---------EEEEec-CCCeEEEEeCCCcEEEEEccc
Q 043942          162 KVDGHIDAIQ---------SLSVSA-IRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       162 ~i~~~~~~i~---------~~~~~~-~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      .......++.         .-.|.+ +|+++....+ |+|.+-|+..
T Consensus       179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~  224 (352)
T TIGR02658       179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSS  224 (352)
T ss_pred             ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCC
Confidence            3311111110         013455 7877766655 9999999643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.50  E-value=0.00013  Score=56.05  Aligned_cols=94  Identities=17%  Similarity=0.154  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeeeeeccCCCe-----
Q 043942           25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNMFSGHGSGL-----   85 (216)
Q Consensus        25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~~~~~~~~v-----   85 (216)
                      ++..++.++.++.+..+|..+++............              .++.++.||.++++.+..........     
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence            46678888889999999999998876654332111              68889999999998876665332211     


Q ss_pred             eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEe
Q 043942           86 TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI  120 (216)
Q Consensus        86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~  120 (216)
                      .+...  .+..++.+..++.+..+|.++|+.+...
T Consensus       184 ~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       184 ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence            11111  1346778888999999999999876544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.49  E-value=3.6e-07  Score=72.58  Aligned_cols=170  Identities=15%  Similarity=0.299  Sum_probs=110.6

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ce---EEEEeC----------CCCcc------cCcEEEEEECCC--
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NL---QCTVEG----------PRGGI------EDSTVWMWNADR--   71 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~---~~~~~~----------~~~~~------~~~~v~i~d~~~--   71 (216)
                      .+++..+..+|.|+-+|.++.-| +.+-|+... ..   +..+..          |....      ....-.+|++..  
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            46788999999999999988766 445565443 22   111111          11100      444556777653  


Q ss_pred             -cceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           72 -GAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        72 -~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                       ......+.+|...|+.+.|+|.. ..+++++.|-.+..||+++... +..+..               .......++|+
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~---------------w~s~asqVkwn  167 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS---------------WRSAASQVKWN  167 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec---------------ccccCceeeec
Confidence             23445567899999999999854 5789999999999999998653 334433               44556677776


Q ss_pred             C-CCcEEEEecccC-eE-------------EeeeCCEEEEEEecC-CCeEEEEeCCCcEEEEEcccc
Q 043942          149 G-TSKYLVTGCVDG-KV-------------DGHIDAIQSLSVSAI-RESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       149 ~-~~~~l~~~~~~~-~i-------------~~~~~~i~~~~~~~~-~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      . ++..+++...+. .+             .+|...|..++|..- ...+.+++.|++|+.||....
T Consensus       168 yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  168 YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            5 334443322211 11             556677777777542 345788999999999998753

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.48  E-value=3.6e-06  Score=65.38  Aligned_cols=66  Identities=15%  Similarity=0.321  Sum_probs=56.6

Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      ....+.+.+++|+...++.|+.||.|.+||...+..... .                ..-.++.++|+|+|.++++|+..
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----------------a~~~P~~iaWHp~gai~~V~s~q  320 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K----------------AEFIPTLIAWHPDGAIFVVGSEQ  320 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e----------------ecccceEEEEcCCCcEEEEEcCC
Confidence            567899999999999999999999999999886643322 2                44667899999999999999999


Q ss_pred             CeE
Q 043942          161 GKV  163 (216)
Q Consensus       161 ~~i  163 (216)
                      |.+
T Consensus       321 Gel  323 (545)
T PF11768_consen  321 GEL  323 (545)
T ss_pred             ceE
Confidence            988

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.48  E-value=0.0002  Score=61.89  Aligned_cols=181  Identities=13%  Similarity=0.081  Sum_probs=104.2

Q ss_pred             EEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEEEeC-CC----------------Ccc--------------cCcEEE
Q 043942           18 SSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCTVEG-PR----------------GGI--------------EDSTVW   65 (216)
Q Consensus        18 ~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~----------------~~~--------------~~~~v~   65 (216)
                      ..++++++ ++++++-...+.|+++|... +.+..+.. ..                .++              .+..|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 66777777888999999764 44433322 10                000              233455


Q ss_pred             EEECCCcceeeeeecc-----------------CCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccc
Q 043942           66 MWNADRGAYLNMFSGH-----------------GSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEF  127 (216)
Q Consensus        66 i~d~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~  127 (216)
                      .+|..++. +.++.+-                 -.....++++| ++..+++.+.++.|++||..++... .+.......
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            55554432 2222110                 11346799999 5666777778899999999876543 222211000


Q ss_pred             cccceEEEeeeecCeEEEEeCCCCcEEEE-ecccCeEE------------ee-----------------------eCCEE
Q 043942          128 SLNYWMICTSLYDGVTCLSWPGTSKYLVT-GCVDGKVD------------GH-----------------------IDAIQ  171 (216)
Q Consensus       128 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~~i~------------~~-----------------------~~~i~  171 (216)
                      .................++++|++..+++ -+.++.|.            ..                       .....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            00000000001234567888998875444 34445550            00                       01235


Q ss_pred             EEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          172 SLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       172 ~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      .++++++|+.+++-+.++.|++||..++..
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v  837 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRV  837 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence            889999999888888899999999876543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=1.2e-06  Score=63.67  Aligned_cols=96  Identities=19%  Similarity=0.231  Sum_probs=68.9

Q ss_pred             CceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccC
Q 043942            4 GDWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHG   82 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~   82 (216)
                      |.+.+.+ -|...|+++..-. ++++|.+.+.+|+|++||++--+.                       +.-+.++++|.
T Consensus       289 ~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----------------------~~~V~qYeGHv  344 (425)
T KOG2695|consen  289 GWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-----------------------KKSVMQYEGHV  344 (425)
T ss_pred             CcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-----------------------ccceeeeeccc
Confidence            4455555 4888899988776 778888888888877777664332                       22355666775


Q ss_pred             CCee--EEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecc
Q 043942           83 SGLT--CGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRS  123 (216)
Q Consensus        83 ~~v~--~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~  123 (216)
                      +.-.  -+...+....+++++.|...++|.++.+..+.+++..
T Consensus       345 N~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  345 NLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            4322  2334566778889999999999999999999888753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=4.2e-05  Score=61.59  Aligned_cols=110  Identities=16%  Similarity=0.212  Sum_probs=87.0

Q ss_pred             CCceeEEeeccccceEEEEEccCC------------CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDG------------QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~------------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------   59 (216)
                      +.+.++.+..|+..|+.+.|.|-.            -+||++...|.|.+||...+..+..++.+..++           
T Consensus        44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~  123 (1062)
T KOG1912|consen   44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD  123 (1062)
T ss_pred             hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence            346778888999999999998721            157788888999999999887777766665544           


Q ss_pred             ---------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCC
Q 043942           60 ---------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPK  112 (216)
Q Consensus        60 ---------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~  112 (216)
                               ..+++.+|+..+|+.+.....-.....|+.+.| |.+.+..-+..|.+.+-+.-
T Consensus       124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence                     678899999999999888776667788899999 66777777777777776653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.45  E-value=2.6e-05  Score=64.12  Aligned_cols=112  Identities=14%  Similarity=0.197  Sum_probs=79.9

Q ss_pred             cCCCcEEEEECCCCceEEEEeCCCCc-c---------------------cCcEEEEEECCCc-ceeeeee----ccCCCe
Q 043942           33 GFHGLVQNRDTSSRNLQCTVEGPRGG-I---------------------EDSTVWMWNADRG-AYLNMFS----GHGSGL   85 (216)
Q Consensus        33 ~~d~~v~vwd~~~~~~~~~~~~~~~~-~---------------------~~~~v~i~d~~~~-~~~~~~~----~~~~~v   85 (216)
                      .....++-.|++.|+.+..+..+... +                     .++.+..||++-. ..+..-.    ......
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            34577888899999998888776644 2                     8888999999853 2221111    133457


Q ss_pred             eEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942           86 TCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG  161 (216)
Q Consensus        86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  161 (216)
                      +|++-..+| +||+|+.+|.|++||-- |+. ...++.               ...+|..+..+.||+++++.+..-
T Consensus       581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~---------------lG~pI~~iDvt~DGkwilaTc~ty  640 (794)
T PF08553_consen  581 SCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPG---------------LGDPIIGIDVTADGKWILATCKTY  640 (794)
T ss_pred             eEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCC---------------CCCCeeEEEecCCCcEEEEeecce
Confidence            788777665 79999999999999943 433 233333               679999999999999987655443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=2.7e-06  Score=68.92  Aligned_cols=53  Identities=13%  Similarity=0.221  Sum_probs=42.8

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK  112 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~  112 (216)
                      .-|.+.+|..++.+.-.....|..+|..+.|+++|..++|+..-|.+.+|...
T Consensus        79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            45556666666555544556699999999999999999999999999999876

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.41  E-value=8.8e-06  Score=68.10  Aligned_cols=171  Identities=10%  Similarity=0.087  Sum_probs=98.2

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC------CCcc---cCcEEEEEECCCc-----ceeeee
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP------RGGI---EDSTVWMWNADRG-----AYLNMF   78 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~~---~~~~v~i~d~~~~-----~~~~~~   78 (216)
                      -...|.+++||||++.++..+..+++.+-.- +-.++.....+      ...+   ..+.=.-+....|     +++...
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e  186 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE  186 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence            3468999999999999998888777655332 11111111110      0000   0000001111111     000000


Q ss_pred             e--c---cCCCeeEEEEcCCCcEEEEe-----cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           79 S--G---HGSGLTCGDFTTDGKTICTG-----SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        79 ~--~---~~~~v~~~~~~~~~~~l~t~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      +  +   ..+.=+++.|.-||.++++.     ...+.|++||-+ |.....-..               ....-.+++|-
T Consensus       187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~---------------~~~l~~~LsWk  250 (1265)
T KOG1920|consen  187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP---------------VEGLQHSLSWK  250 (1265)
T ss_pred             ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc---------------ccccccceeec
Confidence            0  0   11223579999999999883     333899999977 543332222               33445678999


Q ss_pred             CCCcEEEEecc---cCeE-----------------EeeeCCEEEEEEecCCCeEEE---EeCCCcEEEEEccccc
Q 043942          149 GTSKYLVTGCV---DGKV-----------------DGHIDAIQSLSVSAIRESLVS---VSVDGTARVFEIAEFR  200 (216)
Q Consensus       149 ~~~~~l~~~~~---~~~i-----------------~~~~~~i~~~~~~~~~~~l~s---~~~d~~v~vw~~~~~~  200 (216)
                      |.|..+++...   ++.|                 ......+..++|+.++..|+.   ......|++|-+.+..
T Consensus       251 Psgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  251 PSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            99999887543   3333                 112234899999999999886   4445559999887743

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.40  E-value=0.00014  Score=55.86  Aligned_cols=95  Identities=16%  Similarity=0.121  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeeeeeccCCCeeE-EE
Q 043942           25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNMFSGHGSGLTC-GD   89 (216)
Q Consensus        25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~-~~   89 (216)
                      .+..++.++.++.+..+|..+++.+..........              .++.++.+|..+|+.+...... +.+.+ ..
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~  142 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPL  142 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCE
Confidence            46688888899999999999998877655433211              6788999999999887665432 22221 11


Q ss_pred             EcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           90 FTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        90 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .  .+..++.++.++.+..||.++|+.+-.+..
T Consensus       143 v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       143 V--ANGLVVVRTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             E--ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence            1  345677778899999999999988776654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.40  E-value=2.1e-06  Score=60.21  Aligned_cols=59  Identities=25%  Similarity=0.312  Sum_probs=48.6

Q ss_pred             cCeEEEEeCCCCcE-EEEecccCeE---------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEccc
Q 043942          140 DGVTCLSWPGTSKY-LVTGCVDGKV---------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       140 ~~v~~~~~~~~~~~-l~~~~~~~~i---------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ..|.+++-+|..+. +++|+.||.+               ..|..+++.+.|+| ++..|+++++||.+..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            44888998986654 5566777766               78999999999999 568999999999999999763

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.38  E-value=3.1e-05  Score=54.80  Aligned_cols=126  Identities=12%  Similarity=0.020  Sum_probs=79.6

Q ss_pred             cCcEEEEEECCCccee-eeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           60 EDSTVWMWNADRGAYL-NMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ..|...+|...+.+.. .....|...|+-+.=.- ...-+..++.|+++++.++.-+........               
T Consensus        92 ~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~---------------  156 (344)
T KOG4532|consen   92 ASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN---------------  156 (344)
T ss_pred             ccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec---------------
Confidence            5567777777754432 22333433332221111 123466678888888888875544333321               


Q ss_pred             eecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ..-.+.++.++++++++++.++...+                 ......=-+..|+.+...+|++.+||++.|||++...
T Consensus       157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            11237888999999999988887766                 1111222456788888999999999999999998744

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.34  E-value=0.00045  Score=50.60  Aligned_cols=151  Identities=13%  Similarity=0.152  Sum_probs=92.6

Q ss_pred             CCceeEEeeccccce--EEEEEccCCCEEEEEcC-----CCcEEEEECC-CCceEEEEeCCCCcc---------------
Q 043942            3 QGDWASEILGHKDSF--SSLAFSTDGQLLASGGF-----HGLVQNRDTS-SRNLQCTVEGPRGGI---------------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v--~~~~~s~~~~~l~s~~~-----d~~v~vwd~~-~~~~~~~~~~~~~~~---------------   59 (216)
                      +|+..+.+....+.-  ---.||+||++|++.-.     .|.|-|||.. +.+.+.++..+.-..               
T Consensus        37 ~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA  116 (305)
T PF07433_consen   37 TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA  116 (305)
T ss_pred             CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence            455555554322221  13589999999998744     4889999998 445555554322111               


Q ss_pred             -------------------cCcEEEEEECCCcceeeeee----ccCCCeeEEEEcCCCcEEEEecCCCe-------EEEE
Q 043942           60 -------------------EDSTVWMWNADRGAYLNMFS----GHGSGLTCGDFTTDGKTICTGSDNAT-------LSIW  109 (216)
Q Consensus        60 -------------------~~~~v~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~t~~~d~~-------i~~w  109 (216)
                                         .+.++.+.|..+|+.+.+..    .|...+.-+++.++|..++..-..+.       +.++
T Consensus       117 NGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~  196 (305)
T PF07433_consen  117 NGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALH  196 (305)
T ss_pred             cCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEE
Confidence                               66777788888888776633    36678999999999876665543322       3333


Q ss_pred             eCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942          110 NPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       110 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      +  .+..+..+.......        ......+-++++++++.++++.+..|..
T Consensus       197 ~--~g~~~~~~~~p~~~~--------~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  197 R--RGGALRLLPAPEEQW--------RRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             c--CCCcceeccCChHHH--------HhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            3  222222222211000        0145778999999999988877776654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.33  E-value=1.2e-05  Score=65.50  Aligned_cols=130  Identities=15%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------cCcEEEEEECCCc
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------EDSTVWMWNADRG   72 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------~~~~v~i~d~~~~   72 (216)
                      .|.-+..  ++++|.+|...|+|.+-|.++.+.+.++..|.+.+                       .|.-|+|||+++-
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhh
Confidence            4544444  56899999999999999999999999999998876                       7888999999987


Q ss_pred             ceeeeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCC---CCc-eeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           73 AYLNMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPK---GGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      +.+.-+.-+.+ ..-+.|+|. ...+++++..|...+-|..   +.. ....+..               ....+..+++
T Consensus       257 ral~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p---------------~~s~i~~fDi  320 (1118)
T KOG1275|consen  257 RALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP---------------NGSGISAFDI  320 (1118)
T ss_pred             hccCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc---------------CCCcceeEEe
Confidence            76655554444 356778884 4578888899999999843   321 1222222               4455899999


Q ss_pred             CCCCcEEEEecccCeE
Q 043942          148 PGTSKYLVTGCVDGKV  163 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i  163 (216)
                      ++++..++.+..+|.+
T Consensus       321 Ssn~~alafgd~~g~v  336 (1118)
T KOG1275|consen  321 SSNGDALAFGDHEGHV  336 (1118)
T ss_pred             cCCCceEEEecccCcE
Confidence            9999999999999888

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=6.2e-06  Score=64.53  Aligned_cols=80  Identities=15%  Similarity=0.255  Sum_probs=63.6

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCee-EEEEcC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLT-CGDFTT   92 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~-~~~~~~   92 (216)
                      ...|.-+.|+|.-.++|++..+|.|-+..++                  .-++|++         .-|...++ +++|.|
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n------------------~qRlwti---------p~p~~~v~~sL~W~~   72 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN------------------WQRLWTI---------PIPGENVTASLCWRP   72 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec------------------cceeEec---------cCCCCccceeeeecC
Confidence            3468889999999999999988877776653                  2234444         33444555 999999


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCceeEEe
Q 043942           93 DGKTICTGSDNATLSIWNPKGGENFHAI  120 (216)
Q Consensus        93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~  120 (216)
                      ||+.|+.|-.||+|++.|+.++..+..+
T Consensus        73 DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   73 DGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             CCCEEEEEecCCeEEEEEccCCCceecc
Confidence            9999999999999999999999887764

>smart00320 WD40 WD40 repeats

Probab=98.29  E-value=3.9e-06  Score=41.03  Aligned_cols=38  Identities=32%  Similarity=0.685  Sum_probs=33.6

Q ss_pred             ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEe
Q 043942           73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN  110 (216)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd  110 (216)
                      ++...+..|...|.++.|++++..+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.4e-05  Score=59.35  Aligned_cols=80  Identities=15%  Similarity=0.248  Sum_probs=59.4

Q ss_pred             EeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942            9 EILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTC   87 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~   87 (216)
                      -+..|...|.+++|||..+ ++..++.+.+|+                          |.|+++...+..+..+ ..+++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkik--------------------------i~dlet~~~vssy~a~-~~~wS  240 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIK--------------------------IMDLETSCVVSSYIAY-NQIWS  240 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEE--------------------------EEecccceeeeheecc-CCcee
Confidence            4556778899999999766 677777555554                          5555555556666666 77999


Q ss_pred             EEEcCCC-cEEEEecCCCeEEEEeCCCCc
Q 043942           88 GDFTTDG-KTICTGSDNATLSIWNPKGGE  115 (216)
Q Consensus        88 ~~~~~~~-~~l~t~~~d~~i~~wd~~~~~  115 (216)
                      .+|.-|. ++|..|-..|.|.+||++..+
T Consensus       241 C~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  241 CCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eeeccCCcceeEEeccCceEEEEEccCCC
Confidence            9998765 466777799999999999653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=6.9e-05  Score=60.46  Aligned_cols=111  Identities=14%  Similarity=0.136  Sum_probs=75.1

Q ss_pred             eeccccceEEEEEccC-------------CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC--cc---------------
Q 043942           10 ILGHKDSFSSLAFSTD-------------GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG--GI---------------   59 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~-------------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--~~---------------   59 (216)
                      |..|.+.|.-..+.-+             |++++||+.||+|.|-.+.+.+...++..+..  .+               
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv  133 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFV  133 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhhee
Confidence            4556666655555444             99999999999999999888765554433222  11               


Q ss_pred             ---cCcEEEEEECCC-ccee-eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc
Q 043942           60 ---EDSTVWMWNADR-GAYL-NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS  124 (216)
Q Consensus        60 ---~~~~v~i~d~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~  124 (216)
                         ..| +.++.-+- +... ..+..-.++|.++.|.  |+++|-++.+| |++||+.+++.+..++.+.
T Consensus       134 ~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~  199 (846)
T KOG2066|consen  134 SGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS  199 (846)
T ss_pred             ecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCC
Confidence               222 55554331 1111 1344566899999996  78999998887 9999999988887776643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.24  E-value=3.8e-05  Score=59.50  Aligned_cols=122  Identities=13%  Similarity=0.124  Sum_probs=73.5

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe-cCCCe--EEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG-SDNAT--LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~-~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      ..++++|+++++....+. ..+.-..-+|+|||+.|+.+ ..|+.  |++.|+..+.... +..               .
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~---------------~  280 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN---------------G  280 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-ccc---------------C
Confidence            468888888776544443 33334567899999987654 45555  6777877666333 332               2


Q ss_pred             ecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecCCCeEEEEeC-CCc--EEEEEcccc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSV-DGT--ARVFEIAEF  199 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~--v~vw~~~~~  199 (216)
                      .+.-..-.|+|||+.++-.+..+-.                ......-..-.|+|||++|+..+. +|.  |.+.++.++
T Consensus       281 ~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         281 FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence            2222366789999988765544322                111112226678999999987764 344  555655444


Q ss_pred             c
Q 043942          200 R  200 (216)
Q Consensus       200 ~  200 (216)
                      .
T Consensus       361 ~  361 (425)
T COG0823         361 G  361 (425)
T ss_pred             C
Confidence            3

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.24  E-value=0.00051  Score=55.03  Aligned_cols=60  Identities=8%  Similarity=0.019  Sum_probs=43.3

Q ss_pred             ecCeEEEEeCCCCcEEEEecc-cCeE-------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEE
Q 043942          139 YDGVTCLSWPGTSKYLVTGCV-DGKV-------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTAR  192 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~-~~~i-------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~  192 (216)
                      ....-.+.++|||+++++++. +..+                         ..-.......+|+++|+...|--.|..|-
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~  399 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIV  399 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeE
Confidence            345567889999999887765 4443                         01122345678999998777888899999


Q ss_pred             EEEccc
Q 043942          193 VFEIAE  198 (216)
Q Consensus       193 vw~~~~  198 (216)
                      .|++..
T Consensus       400 kwn~~~  405 (635)
T PRK02888        400 KWNIEA  405 (635)
T ss_pred             EEehHH
Confidence            999876

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.22  E-value=0.00099  Score=49.51  Aligned_cols=97  Identities=12%  Similarity=0.127  Sum_probs=60.7

Q ss_pred             EEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCCCC-cc-------------cCcEEEEEE-----
Q 043942           18 SSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGPRG-GI-------------EDSTVWMWN-----   68 (216)
Q Consensus        18 ~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~~-~~-------------~~~~v~i~d-----   68 (216)
                      -.+..+|+++.+++++          ..-.|.+||..+.....++..+.. ..             .++.+.++|     
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            3467899999888764          234699999999999998877764 11             445555555     


Q ss_pred             ------CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC-CCcee
Q 043942           69 ------ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK-GGENF  117 (216)
Q Consensus        69 ------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~~  117 (216)
                            +..++.+..+.- .+  +.+.+-...+.+.+-|.||.+....+. .|+..
T Consensus       119 SVtVVDl~~~kvv~ei~~-PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDT-PG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             EEEEEETTTTEEEEEEEG-TS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             eEEEEECCCCceeeeecC-CC--EEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence                  444454444431 22  112221123457788889999999888 45554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=0.00075  Score=55.21  Aligned_cols=178  Identities=13%  Similarity=0.069  Sum_probs=107.4

Q ss_pred             EEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------c-Cc-EEEEEECCCc------
Q 043942           21 AFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------E-DS-TVWMWNADRG------   72 (216)
Q Consensus        21 ~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------~-~~-~v~i~d~~~~------   72 (216)
                      +|++.+..++.|+.+|.|.+.+-.- +....++.....+                    . +. .+++||++.-      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            5778888999999999887766321 2223333333221                    1 33 7999998742      


Q ss_pred             cee--eeeec-----cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           73 AYL--NMFSG-----HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        73 ~~~--~~~~~-----~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      .++  ..+..     ...++.+++.+.+-+.+|.|-.+|.|..+.-+   ..+.... ..       ........+|+.+
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs-r~-------~~~~~~~~pITgL  177 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS-RQ-------DYSHRGKEPITGL  177 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc-ce-------eeeccCCCCceee
Confidence            222  11222     24578899999999999999999999998532   1111100 00       0001156789999


Q ss_pred             EeCCCCcE-EEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC-Ccc
Q 043942          146 SWPGTSKY-LVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP-SYS  209 (216)
Q Consensus       146 ~~~~~~~~-l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~-~~~  209 (216)
                      .+..++.. ++++..+...              ..|...+.+..+++....++.++ +..+.+|+....++...++ ++.
T Consensus       178 ~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~k  256 (933)
T KOG2114|consen  178 ALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEK  256 (933)
T ss_pred             EEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCe
Confidence            98777665 3333333211              45566777777776555455444 5678999988766666665 444


Q ss_pred             ee
Q 043942          210 FK  211 (216)
Q Consensus       210 ~~  211 (216)
                      ..
T Consensus       257 k~  258 (933)
T KOG2114|consen  257 KE  258 (933)
T ss_pred             EE
Confidence            33

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.15  E-value=0.0018  Score=50.40  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe
Q 043942           83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK  162 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  162 (216)
                      +++..++.||+++++|.-..+|.+.+...+-.+...++...              .......+.|.-+...++.- .+..
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~--------------~~~~p~~~~WCG~dav~l~~-~~~l  281 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD--------------SKSPPKQMAWCGNDAVVLSW-EDEL  281 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC--------------cCCCCcEEEEECCCcEEEEe-CCEE
Confidence            56889999999999998888999988887655555555542              23455677776554443333 2211


Q ss_pred             E-EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942          163 V-DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF  210 (216)
Q Consensus       163 i-~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~  210 (216)
                      . .+..+  ..+.|..++..++..-.|| +||..-...+.+.+.|....
T Consensus       282 ~lvg~~~--~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~~~  327 (410)
T PF04841_consen  282 LLVGPDG--DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDSTE  327 (410)
T ss_pred             EEECCCC--CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCHHHH
Confidence            1 11111  2234444555444444465 78877666666666665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.15  E-value=8.5e-05  Score=56.96  Aligned_cols=134  Identities=11%  Similarity=0.101  Sum_probs=88.0

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT   91 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~   91 (216)
                      +-.++|...+|.|+++.|++.+.-                        ....+.++|++.. .  .+......=+.+-|+
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~------------------------~pa~~s~~~lr~N-l--~~~~Pe~~rNT~~fs  324 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGY------------------------MPASVSVFDLRGN-L--RFYFPEQKRNTIFFS  324 (561)
T ss_pred             cccccceeeeecccCCceeEEecc------------------------cccceeecccccc-e--EEecCCccccccccc
Confidence            447899999999999888876621                        3344445555533 2  222344455678899


Q ss_pred             CCCcEEEEecCC---CeEEEEeCCCCceeE-EeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe-----
Q 043942           92 TDGKTICTGSDN---ATLSIWNPKGGENFH-AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK-----  162 (216)
Q Consensus        92 ~~~~~l~t~~~d---~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-----  162 (216)
                      |.+++++.++-|   |.+-+||........ .+.                 .....-+.|+|+++++.+....-.     
T Consensus       325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-----------------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn  387 (561)
T COG5354         325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-----------------GLNTSYCDWSPDGQFYDTDTTSEKLRVDN  387 (561)
T ss_pred             CcccEEEEecCCccccceEEeccCCceEEEEEee-----------------cCCceEeeccCCceEEEecCCCcccccCc
Confidence            999999998865   669999988544333 343                 234456789999999887654332     


Q ss_pred             -E----E--eeeCCEEEEEEecCCCeEEEEeCCC
Q 043942          163 -V----D--GHIDAIQSLSVSAIRESLVSVSVDG  189 (216)
Q Consensus       163 -i----~--~~~~~i~~~~~~~~~~~l~s~~~d~  189 (216)
                       +    .  ......+.+.|.|.+++..+.+.+.
T Consensus       388 ~i~l~~v~g~~~fel~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         388 SIKLWDVYGAKVFELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ceEEEEecCchhhhhhhccccCCcccceeeccCC
Confidence             2    0  1112557788999888877766554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.14  E-value=1.4e-05  Score=57.61  Aligned_cols=163  Identities=11%  Similarity=0.120  Sum_probs=105.0

Q ss_pred             eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942           11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDF   90 (216)
Q Consensus        11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~   90 (216)
                      .+|...|++++|+.|.+.++++. |=.|.+|+++-              .|+...|.|+...    .+..-..-|++..|
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i--------------~D~sFnIVDiKP~----nmeeLteVItSaeF  229 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEI--------------IDGSFNIVDIKPH----NMEELTEVITSAEF  229 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccc--------------cCCceEEEeccCc----cHHHHHHHHhhccc
Confidence            57888999999999998888876 66788888764              4666666676522    12223356788899


Q ss_pred             cC-CCcEEEEecCCCeEEEEeCCCCce------eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942           91 TT-DGKTICTGSDNATLSIWNPKGGEN------FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus        91 ~~-~~~~l~t~~~d~~i~~wd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      +| ....++-.+..|.|++-|++....      +......+..     ...+..-...|..+.|+++|+++++-+....-
T Consensus       230 hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~-----~~ff~eivsSISD~kFs~ngryIlsRdyltvk  304 (460)
T COG5170         230 HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD-----VDFFEEIVSSISDFKFSDNGRYILSRDYLTVK  304 (460)
T ss_pred             CHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc-----chhHHHHhhhhcceEEcCCCcEEEEeccceEE
Confidence            99 456778888999999999984321      1111111100     00011134568889999999999875543211


Q ss_pred             --------------Eee------------eCC---EEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          164 --------------DGH------------IDA---IQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       164 --------------~~~------------~~~---i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                                    .-|            ...   =-.+.|+-|.+.+++|+..+..-++-+.
T Consensus       305 iwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         305 IWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             EEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                          000            011   1346777788888888888877777643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.10  E-value=0.00021  Score=51.28  Aligned_cols=133  Identities=14%  Similarity=0.151  Sum_probs=85.8

Q ss_pred             cCcEEEEEECCCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEE--------------------EeCCCCceeE
Q 043942           60 EDSTVWMWNADRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSI--------------------WNPKGGENFH  118 (216)
Q Consensus        60 ~~~~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~--------------------wd~~~~~~~~  118 (216)
                      ..|.|-+||.+.+ +.+..+..|.-....+.|.+||+.++.+..  -|..                    .|..+|..+.
T Consensus       138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~lie  215 (366)
T COG3490         138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE  215 (366)
T ss_pred             CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhh
Confidence            5677888888743 556677788777889999999999988642  2333                    2222222222


Q ss_pred             EeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------------------EeeeCCEEE
Q 043942          119 AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------------------DGHIDAIQS  172 (216)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------------------~~~~~~i~~  172 (216)
                      +....           ...+.-.+..++..+||...+.+-..|.-                          ....+.|-+
T Consensus       216 kh~Lp-----------~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs  284 (366)
T COG3490         216 KHTLP-----------ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS  284 (366)
T ss_pred             hccCc-----------hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh
Confidence            11110           01155678889999999887766555433                          122356778


Q ss_pred             EEEecCCCeEEEEeCC-CcEEEEEcccccceeec
Q 043942          173 LSVSAIRESLVSVSVD-GTARVFEIAEFRRATKA  205 (216)
Q Consensus       173 ~~~~~~~~~l~s~~~d-~~v~vw~~~~~~~~~~~  205 (216)
                      ++.+.+..+++..+-. +...+||..++......
T Consensus       285 iA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a  318 (366)
T COG3490         285 IAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA  318 (366)
T ss_pred             eeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence            8888766766665554 55689999998866543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.09  E-value=3.3e-05  Score=61.32  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=82.6

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT   92 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~   92 (216)
                      |...|.--+++..+++++.|+.-|.+++|+-..++...                         ....+-.+.+.....++
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-------------------------~~~~~~~~~~~~~~vs~   86 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-------------------------LKNEGATGITCVRSVSS   86 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-------------------------ccccCccceEEEEEecc
Confidence            44556666777788999999988888887765443221                         11222345567778888


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942           93 DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus        93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      +..++|.|+..|.|.++-+..+.........+..         ..|...|++++|++++..+++|...|.+
T Consensus        87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d---------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv  148 (726)
T KOG3621|consen   87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD---------KSHKCRVTALEWSKNGMKLYSGDSQGKV  148 (726)
T ss_pred             hhHhhhhhcCCceEEeehhhccCCCcceeecccc---------ccCCceEEEEEecccccEEeecCCCceE
Confidence            9999999999999999988864332211111100         0167899999999999999999999988

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.09  E-value=0.0027  Score=49.68  Aligned_cols=132  Identities=12%  Similarity=0.079  Sum_probs=68.6

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------cCcEEEEEECCCcceeeee
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------~~~~v~i~d~~~~~~~~~~   78 (216)
                      .+....-.+..+.++|+|+.++.++ ||.-.++.....+....-.+....-          .+++|.++.--+......+
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred             cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEE
Confidence            3334445678999999999888855 7777777754433322211111100          3444555321111111122


Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                      +. ...+..+-.   |..|...+.+ .|.+||..+++.+..+..                 .+|..+.|++++++++..+
T Consensus       106 ~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----------------~~vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen  106 KL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV-----------------SAVKYVIWSDDGELVALVT  163 (443)
T ss_dssp             ---SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS------------------E-EEEEE-TTSSEEEEE-
T ss_pred             cC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-----------------CCCcEEEEECCCCEEEEEe
Confidence            21 112333322   7777776554 899999999999998864                 2489999999999999888


Q ss_pred             ccCeE
Q 043942          159 VDGKV  163 (216)
Q Consensus       159 ~~~~i  163 (216)
                      .+...
T Consensus       164 ~~~i~  168 (443)
T PF04053_consen  164 KDSIY  168 (443)
T ss_dssp             S-SEE
T ss_pred             CCeEE
Confidence            77655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.09  E-value=0.00033  Score=56.10  Aligned_cols=141  Identities=13%  Similarity=0.112  Sum_probs=80.3

Q ss_pred             eEEEEEccCCCEEEEEcCC----CcEEEEECCCCceEEEEeCCC--C--------cccCcEEEEEECCC----c-ceeee
Q 043942           17 FSSLAFSTDGQLLASGGFH----GLVQNRDTSSRNLQCTVEGPR--G--------GIEDSTVWMWNADR----G-AYLNM   77 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d----~~v~vwd~~~~~~~~~~~~~~--~--------~~~~~~v~i~d~~~----~-~~~~~   77 (216)
                      ...++++|+|+++++.+.+    .++..-+..+......+....  .        -+.++.|.+.|.++    + ..+..
T Consensus       237 pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~y  316 (635)
T PRK02888        237 LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRY  316 (635)
T ss_pred             cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEE
Confidence            3567889999998887632    223333333322222221110  0        01457899999998    3 44444


Q ss_pred             eeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccc-eEEEeeeecCeEEEEeCCCCcEEE
Q 043942           78 FSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNY-WMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        78 ~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                      +. -......++++|||+++++++ .+.++.|.|+.+.+....-+.     .++. ......-.......+|+++|+.+.
T Consensus       317 IP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-----~~~~~vvaevevGlGPLHTaFDg~G~ayt  390 (635)
T PRK02888        317 VP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-----KPRDAVVAEPELGLGPLHTAFDGRGNAYT  390 (635)
T ss_pred             EE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-----CccceEEEeeccCCCcceEEECCCCCEEE
Confidence            44 556688999999999887665 689999999997653110000     0000 000000233445667788877666


Q ss_pred             EecccCeE
Q 043942          156 TGCVDGKV  163 (216)
Q Consensus       156 ~~~~~~~i  163 (216)
                      +-.-|..+
T Consensus       391 slf~dsqv  398 (635)
T PRK02888        391 TLFLDSQI  398 (635)
T ss_pred             eEeeccee
Confidence            66666655

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=4.9e-05  Score=56.61  Aligned_cols=93  Identities=12%  Similarity=0.043  Sum_probs=71.0

Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      +++.+..+-+...-+..+...|.+++|+|..+ ++..++.+.+|++.|+++...+..+..                    
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--------------------  234 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--------------------  234 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--------------------
Confidence            67777666666666777888999999999776 788899999999999997766555542                    


Q ss_pred             EEEEeCCCCcEEEEecccCeEEeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEccccc
Q 043942          143 TCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~  200 (216)
                                             + ..+++++|+-|.. ++..|-..|.|.|||++..+
T Consensus       235 -----------------------~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  235 -----------------------Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             -----------------------c-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence                                   2 5667778877654 55566668888899887654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.02  E-value=0.0021  Score=49.81  Aligned_cols=168  Identities=13%  Similarity=0.033  Sum_probs=89.5

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCC---------Ccc----------cCcEEEEEECCCcceeeeeeccC--C-
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPR---------GGI----------EDSTVWMWNADRGAYLNMFSGHG--S-   83 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---------~~~----------~~~~v~i~d~~~~~~~~~~~~~~--~-   83 (216)
                      +..++.+..++.+..+|..+|+.+.......         .+.          .++.+..+|..+|+.+...+...  + 
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~  239 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA  239 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence            3456677788999999999998887765421         111          56777778888877655432110  0 


Q ss_pred             ----CeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942           84 ----GLTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG  157 (216)
Q Consensus        84 ----~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  157 (216)
                          ....+.-+|  .+..+..++.++.+..+|..+|+.+-........    ....   ..+.+.  ..+.++..++.-
T Consensus       240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~----~~~~---~~~~vy--~~~~~g~l~ald  310 (394)
T PRK11138        240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVN----DFAV---DGGRIY--LVDQNDRVYALD  310 (394)
T ss_pred             cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCcc----CcEE---ECCEEE--EEcCCCeEEEEE
Confidence                011111222  3456667778999999999999876554321100    0000   000000  011222222222


Q ss_pred             cccCeEEeee-----CCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          158 CVDGKVDGHI-----DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       158 ~~~~~i~~~~-----~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      -.+|.+.-..     ....+...  .+.+|+.++.||.+++.|..+++.+-+
T Consensus       311 ~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~  360 (394)
T PRK11138        311 TRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ  360 (394)
T ss_pred             CCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            2222220000     01111111  245677888899999999988876543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.01  E-value=0.0023  Score=46.01  Aligned_cols=157  Identities=15%  Similarity=0.153  Sum_probs=81.5

Q ss_pred             EeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc-CCCee
Q 043942            9 EILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH-GSGLT   86 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~v~   86 (216)
                      .+.+-...+..++|+|+.+ ++++....+.|...+..                           |+.++.+.-. .+..-
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~---------------------------G~vlr~i~l~g~~D~E   68 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD---------------------------GKVLRRIPLDGFGDYE   68 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------------------------EEEEEE-SS-SSEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC---------------------------CCEEEEEeCCCCCCce
Confidence            4555556799999999765 55555655555555432                           3333333322 24578


Q ss_pred             EEEEcCCCcEEEEecCCCeEEEEeCCCCc-e--eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942           87 CGDFTTDGKTICTGSDNATLSIWNPKGGE-N--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus        87 ~~~~~~~~~~l~t~~~d~~i~~wd~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      .|++..++.++++--.++.+.++++.... .  ......-.....       ...+..+-.++|+|.++.|+++-+....
T Consensus        69 gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~N~G~EGla~D~~~~~L~v~kE~~P~  141 (248)
T PF06977_consen   69 GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP-------NKGNKGFEGLAYDPKTNRLFVAKERKPK  141 (248)
T ss_dssp             EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S----------SS--EEEEEETTTTEEEEEEESSSE
T ss_pred             eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc-------cCCCcceEEEEEcCCCCEEEEEeCCCCh
Confidence            89998888888877779999999984321 1  111111000000       1145668899999977666655443221


Q ss_pred             -------------------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccccc
Q 043942          164 -------------------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       164 -------------------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~  200 (216)
                                               ......+.+++++|.. ++++-+..+..|..+| .+++
T Consensus       142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~  203 (248)
T PF06977_consen  142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGR  203 (248)
T ss_dssp             EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--
T ss_pred             hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCC
Confidence                                     1123457889999864 5566666778888887 3344

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.99  E-value=6e-05  Score=59.94  Aligned_cols=102  Identities=16%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe
Q 043942           83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK  162 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  162 (216)
                      ..|.--+++..+++++.|+..|.+++|+-..++....-..              +....+.....+++..++|.|+..|.
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~--------------~~~~~~~~~~vs~~e~lvAagt~~g~   99 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE--------------GATGITCVRSVSSVEYLVAAGTASGR   99 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc--------------CccceEEEEEecchhHhhhhhcCCce
Confidence            3344444566789999999999999999776654432221              02344556677888888888888888


Q ss_pred             E--------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          163 V--------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       163 i--------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      |                    ..|...|++++|++|+..+.+|...|+|..-.+..
T Consensus       100 V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  100 VSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             EEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            8                    45778999999999999999999999999888776

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.97  E-value=0.0017  Score=50.09  Aligned_cols=105  Identities=14%  Similarity=0.093  Sum_probs=63.8

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEE------EEeCC--CCcccCcEEEEEECCCc---------ceeeee
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC------TVEGP--RGGIEDSTVWMWNADRG---------AYLNMF   78 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~------~~~~~--~~~~~~~~v~i~d~~~~---------~~~~~~   78 (216)
                      .|..+.|+++..-|+.+...|.|-+|.....+...      ..+..  .....++.-.+-|+...         .+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999998899999999999999876543332      11100  00113334445565431         233344


Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEee
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIR  121 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~  121 (216)
                      ....++|++++.+ |=.+++.|..+|.+.+.|++....+..-.
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~  124 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNEN  124 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeecc
Confidence            5567899999987 55699999999999999999777766533

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.0001  Score=55.80  Aligned_cols=168  Identities=13%  Similarity=0.103  Sum_probs=103.4

Q ss_pred             eccccceEEEEEccCCCEEEEEcCCCcEEEEECCC-CceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEE
Q 043942           11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGD   89 (216)
Q Consensus        11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~   89 (216)
                      +-|..+|.++.+++.+..+++....|.|.-|.... -+..            .+-.-|.+....-+..+.-......++.
T Consensus       141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP------------r~~l~~~~K~eTdLy~f~K~Kt~pts~E  208 (558)
T KOG0882|consen  141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP------------RTNLNFELKHETDLYGFPKAKTEPTSFE  208 (558)
T ss_pred             ccccCceEEEEeeccccceeeccccceeEeecCCCcccCc------------cccccccccccchhhcccccccCccceE
Confidence            35889999999999999999999899999998763 1100            0011233333333333333456678999


Q ss_pred             EcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeEEeee-C
Q 043942           90 FTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHI-D  168 (216)
Q Consensus        90 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~-~  168 (216)
                      |+|++..+.+-+.|..|+++++++|+.++.+............     ..-.+..+.|..   .+++   +..+..|. .
T Consensus       209 fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k-----s~y~l~~VelgR---Rmav---erelek~~~~  277 (558)
T KOG0882|consen  209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK-----SPYGLMHVELGR---RMAV---ERELEKHGST  277 (558)
T ss_pred             EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc-----cccccceeehhh---hhhH---HhhHhhhcCc
Confidence            9999999999999999999999999998888753222111100     112223333321   1111   11112222 2


Q ss_pred             CEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          169 AIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       169 ~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      .-+.+.|+..|++|+-++.=| |++.++.++...
T Consensus       278 ~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~  310 (558)
T KOG0882|consen  278 VGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV  310 (558)
T ss_pred             ccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence            335677888888887766433 677777766544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.93  E-value=0.0032  Score=44.88  Aligned_cols=97  Identities=19%  Similarity=0.155  Sum_probs=72.4

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCC----Ccc----------cCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPR----GGI----------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT   91 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----~~~----------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~   91 (216)
                      ..+++.|+..+.+..-|..+|+...+.....    .++          ..+.+++.+.++|.....+.....--......
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            3578888889999999999987765432111    111          78889999999998887776543322344557


Q ss_pred             CCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           92 TDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        92 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +++..+..|+.|+..+..|.++...+...+.
T Consensus       103 ~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             CCCceEEEecCCCcEEEecccccceEEeccc
Confidence            7899999999999999999998888777654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.91  E-value=0.0024  Score=49.53  Aligned_cols=96  Identities=17%  Similarity=0.117  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC----cc----------cCcEEEEEECCCcceeeeeeccCCCeeE-EEE
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----GI----------EDSTVWMWNADRGAYLNMFSGHGSGLTC-GDF   90 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----~~----------~~~~v~i~d~~~~~~~~~~~~~~~~v~~-~~~   90 (216)
                      +..++.++.++.+..+|.++|+...+.+....    +.          .++.++-+|.++|+.+............ ..-
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~  199 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES  199 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence            45677788899999999999987766654322    11          6788999999999888766532111000 001


Q ss_pred             cC--CCcEEEEecCCCeEEEEeCCCCceeEEee
Q 043942           91 TT--DGKTICTGSDNATLSIWNPKGGENFHAIR  121 (216)
Q Consensus        91 ~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~  121 (216)
                      +|  .+..++.++.++.+..+|..+|+.+-...
T Consensus       200 sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~  232 (394)
T PRK11138        200 APATAFGGAIVGGDNGRVSAVLMEQGQLIWQQR  232 (394)
T ss_pred             CCEEECCEEEEEcCCCEEEEEEccCChhhheec
Confidence            12  23456677889999999999998765543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.90  E-value=0.00059  Score=48.84  Aligned_cols=110  Identities=12%  Similarity=0.110  Sum_probs=70.8

Q ss_pred             cccceEEEEEccCCCEEEEEcCCC-----------cEEEEECCCCceEEEEeC-CCCcc--cCcEEEEEECCCcceeeee
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHG-----------LVQNRDTSSRNLQCTVEG-PRGGI--EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~-----------~v~vwd~~~~~~~~~~~~-~~~~~--~~~~v~i~d~~~~~~~~~~   78 (216)
                      +...|.++.++|..++|+.|+...           -+..|.+-++.+....-. ....+  ...+-.+|.+-+.+.....
T Consensus       146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~  225 (282)
T PF15492_consen  146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ  225 (282)
T ss_pred             CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence            467899999999989888876321           356677666544333211 11111  1122334443322222111


Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      ......|..|..+|||..|++.+.+|.|.+|++-+-+.......
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            22456799999999999999999999999999998777666653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.88  E-value=2.1e-05  Score=63.96  Aligned_cols=101  Identities=18%  Similarity=0.228  Sum_probs=76.5

Q ss_pred             CCeeEEEEcCCCcEEEEec----CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           83 SGLTCGDFTTDGKTICTGS----DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                      +..+-.+|+|...++++++    ..|.|.+|- ++|++.....                .+-.+++++|+|..-.|+.|=
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt----------------~P~hatSLCWHpe~~vLa~gw   78 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT----------------YPVHATSLCWHPEEFVLAQGW   78 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc----------------cceehhhhccChHHHHHhhcc
Confidence            3345578999999998876    457788774 4565444333                344567799999877777776


Q ss_pred             ccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          159 VDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       159 ~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      .-|.+              ..|..+|..+.|||+|..|+++..-|.|.+|...-..
T Consensus        79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence            66655              5778899999999999999999999999999887433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.84  E-value=6.4e-06  Score=64.69  Aligned_cols=147  Identities=20%  Similarity=0.282  Sum_probs=90.1

Q ss_pred             ccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCc--ceee--eeec-cCCCe
Q 043942           12 GHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRG--AYLN--MFSG-HGSGL   85 (216)
Q Consensus        12 ~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~--~~~~--~~~~-~~~~v   85 (216)
                      +|....++++|++ |.+.||.|-....                      .+..+.|||+.++  .+..  .+.+ .....
T Consensus       100 ~~ar~Ct~lAwneLDtn~LAagldkhr----------------------nds~~~Iwdi~s~ltvPke~~~fs~~~l~gq  157 (783)
T KOG1008|consen  100 GYARPCTSLAWNELDTNHLAAGLDKHR----------------------NDSSLKIWDINSLLTVPKESPLFSSSTLDGQ  157 (783)
T ss_pred             cccccccccccccccHHHHHhhhhhhc----------------------ccCCccceecccccCCCccccccccccccCc
Confidence            4566788888888 5566776632111                      3445555555543  1111  1111 23345


Q ss_pred             eEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecccCeE
Q 043942           86 TCGDFTTDGKTICTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV  163 (216)
Q Consensus        86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i  163 (216)
                      .+++|..+.+++.+|...+.+.++|++.. .....+                 ....+..+..+| .+.++++-. ||.+
T Consensus       158 ns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-----------------nTk~vqG~tVdp~~~nY~cs~~-dg~i  219 (783)
T KOG1008|consen  158 NSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-----------------NTKYVQGITVDPFSPNYFCSNS-DGDI  219 (783)
T ss_pred             cccccccCcchhhcccccchhhhhhhhhhhhhhhhh-----------------hhhhcccceecCCCCCceeccc-cCce
Confidence            68888888999999999999999999832 222222                 223455666677 666666544 5555


Q ss_pred             ---------------Eee-----eCCEEEEEEecCCC-eEEEEeC-CCcEEEEEccc
Q 043942          164 ---------------DGH-----IDAIQSLSVSAIRE-SLVSVSV-DGTARVFEIAE  198 (216)
Q Consensus       164 ---------------~~~-----~~~i~~~~~~~~~~-~l~s~~~-d~~v~vw~~~~  198 (216)
                                     ..|     ...+..++|+|... .+++... .++|+.+++..
T Consensus       220 AiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  220 AIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence                           111     12489999999643 4555555 58899999864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.82  E-value=0.0042  Score=48.68  Aligned_cols=163  Identities=12%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-------Ccc----cCcEEEEEECCCcceeeeeeccCCC
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-------GGI----EDSTVWMWNADRGAYLNMFSGHGSG   84 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------~~~----~~~~v~i~d~~~~~~~~~~~~~~~~   84 (216)
                      .-....|.+. ..+|+-...+.|.++.--+.+..+.++.+.       +..    .++.|.+||.++++.+..+.-.  +
T Consensus        70 ~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~  146 (443)
T PF04053_consen   70 SGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVS--A  146 (443)
T ss_dssp             E-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS---E
T ss_pred             ceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEecC--C
Confidence            3446778884 457777778889997433333222222221       111    5667999999999999988733  3


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCCCC-----------ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPKGG-----------ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                      |..+.|++++.+++..+.+ .+.+++....           .....+..               ....|.+.+|..+ -+
T Consensus       147 vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---------------~~~~IkSg~W~~d-~f  209 (443)
T PF04053_consen  147 VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---------------ISERIKSGCWVED-CF  209 (443)
T ss_dssp             -EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---------------E-S--SEEEEETT-EE
T ss_pred             CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---------------ecceeEEEEEEcC-EE
Confidence            8999999999999988755 6777765532           01222211               2456777777655 33


Q ss_pred             EEEe---------cccCeEEeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          154 LVTG---------CVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       154 l~~~---------~~~~~i~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      +++.         +.-+.+..-..++.=+...|+.+.+.....|+.+..+.+..
T Consensus       210 iYtT~~~lkYl~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  210 IYTTSNHLKYLVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEE-TTEEEEEETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EEEcCCeEEEEEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            3332         22233333355666677777667777777788887776653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.82  E-value=0.0053  Score=43.86  Aligned_cols=84  Identities=18%  Similarity=0.291  Sum_probs=54.6

Q ss_pred             CCcEEEEECCCCceEEEEeCCC---Ccc--------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942           35 HGLVQNRDTSSRNLQCTVEGPR---GGI--------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI   97 (216)
Q Consensus        35 d~~v~vwd~~~~~~~~~~~~~~---~~~--------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   97 (216)
                      +|.|..||..+++.+.......   ...              .++.++.||..+|+.+..... ...+.... ..++..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence            4556666666666555554311   000              788999999999998877764 23222211 2235566


Q ss_pred             EEecCCCeEEEEeCCCCceeEEe
Q 043942           98 CTGSDNATLSIWNPKGGENFHAI  120 (216)
Q Consensus        98 ~t~~~d~~i~~wd~~~~~~~~~~  120 (216)
                      +.++.++.+..+|..+|+.+...
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~  102 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSI  102 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEE
T ss_pred             ccccceeeeEecccCCcceeeee
Confidence            66668889999999999988774

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.81  E-value=0.0059  Score=44.07  Aligned_cols=126  Identities=17%  Similarity=0.249  Sum_probs=77.5

Q ss_pred             ccceEEEEEccCCCEEEEEcCC--------CcEEEEECCCCceEEEEeCC--CCcc--------------cCcEEEEEEC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFH--------GLVQNRDTSSRNLQCTVEGP--RGGI--------------EDSTVWMWNA   69 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d--------~~v~vwd~~~~~~~~~~~~~--~~~~--------------~~~~v~i~d~   69 (216)
                      ....+.+++.|+|++.++....        |.+..++.. ++.......-  ..++              ..+.|..+++
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~  163 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL  163 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEec
Confidence            4568899999999987776543        457777777 4433322211  1111              4555666666


Q ss_pred             CCc-c------eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           70 DRG-A------YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        70 ~~~-~------~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      ... .      ....+....+..-.+++..+|++.++....+.|.++|.+ |+.+..+..               ....+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~---------------p~~~~  227 (246)
T PF08450_consen  164 DADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL---------------PVPRP  227 (246)
T ss_dssp             ETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE----------------SSSSE
T ss_pred             cccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC---------------CCCCE
Confidence            421 1      111122222347789999999988887788999999988 888887775               33578


Q ss_pred             EEEEe-CCCCcEEEE
Q 043942          143 TCLSW-PGTSKYLVT  156 (216)
Q Consensus       143 ~~~~~-~~~~~~l~~  156 (216)
                      ++++| .++.+.|+.
T Consensus       228 t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  228 TNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEEEEESTTSSEEEE
T ss_pred             EEEEEECCCCCEEEE
Confidence            89999 466555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.79  E-value=0.0048  Score=46.46  Aligned_cols=118  Identities=12%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             cEEEEEECCCc----ceeeee--eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEE
Q 043942           62 STVWMWNADRG----AYLNMF--SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMI  134 (216)
Q Consensus        62 ~~v~i~d~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~  134 (216)
                      |.+.++++.+.    ..+..+  ....++|++++-- +++ ++.+. .+.|.+|++...+ ....-...           
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~-----------  127 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD-----------  127 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE------------
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec-----------
Confidence            99999999873    222222  2356888888766 444 44433 4789999998777 33222110           


Q ss_pred             EeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          135 CTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                         ....+.++...  ++++++|.....+                 .....+++++.+-++++.++.+..+|.+.++...
T Consensus       128 ---~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  128 ---SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             ---BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ---ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence               11223333322  3344444433332                 1224568888888777788899999999999886


Q ss_pred             c
Q 043942          198 E  198 (216)
Q Consensus       198 ~  198 (216)
                      .
T Consensus       203 ~  203 (321)
T PF03178_consen  203 P  203 (321)
T ss_dssp             S
T ss_pred             C
Confidence            3

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.72  E-value=0.00082  Score=52.27  Aligned_cols=128  Identities=18%  Similarity=0.199  Sum_probs=71.5

Q ss_pred             EEEEccCCCEEEEEc-CCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942           19 SLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI   97 (216)
Q Consensus        19 ~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   97 (216)
                      ..+|+|||++|+-+. .||.                        -.|+++|+.++.. ..+..-.+.-..=.|+|||+.+
T Consensus       242 ~P~fspDG~~l~f~~~rdg~------------------------~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~i  296 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGS------------------------PDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKI  296 (425)
T ss_pred             CccCCCCCCEEEEEECCCCC------------------------ccEEEEcCCCCcc-eecccCCccccCccCCCCCCEE
Confidence            468999998776544 4443                        3345556655542 2244333333467799999988


Q ss_pred             EEec-CCCe--EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc-Ce--EE-------
Q 043942           98 CTGS-DNAT--LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD-GK--VD-------  164 (216)
Q Consensus        98 ~t~~-~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~--i~-------  164 (216)
                      +..+ ..|.  |.+.|.+.+.. ..+..               ....-..-.|+|||++++..+.. |.  +.       
T Consensus       297 vf~Sdr~G~p~I~~~~~~g~~~-~riT~---------------~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         297 VFTSDRGGRPQIYLYDLEGSQV-TRLTF---------------SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             EEEeCCCCCcceEEECCCCCce-eEeec---------------cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence            7665 4444  66666664443 33332               11222267889999988876642 32  21       


Q ss_pred             ------eeeCCEEEEEEecCCCeEEEEeC
Q 043942          165 ------GHIDAIQSLSVSAIRESLVSVSV  187 (216)
Q Consensus       165 ------~~~~~i~~~~~~~~~~~l~s~~~  187 (216)
                            ........-.|.|+++.++..+.
T Consensus       361 ~~~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         361 GKIRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CcEEEccccccCCCCCcCCCCceEEEecc
Confidence                  11222334456777777665443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.71  E-value=7.9e-05  Score=61.16  Aligned_cols=116  Identities=14%  Similarity=0.152  Sum_probs=89.5

Q ss_pred             eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942           74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                      ...+++.|+...+|++|+.+.++|+.|+..|.|+++++.+|........               |...++.+.=+.+|..
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc---------------H~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC---------------HQSAVTLVEPSVDGST 1157 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc---------------cccccccccccCCcce
Confidence            4556777888999999999999999999999999999999998887777               9999999998999998


Q ss_pred             EEEecccCe-E-----------Eeee-CCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          154 LVTGCVDGK-V-----------DGHI-DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       154 l~~~~~~~~-i-----------~~~~-~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      +++.+.-.. +           ..|. ..-.++.|+...+.-+.|.......+||+.++.+..+
T Consensus      1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             eeeeccccCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence            877655443 2           2221 2335667776655545555556789999998776544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.00033  Score=58.61  Aligned_cols=71  Identities=17%  Similarity=0.309  Sum_probs=53.8

Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      -.++|++++|+.+|+.++.|-.+|.|.+||+..++..+.+.....            ....+..+.+..++..+.++...
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a------------p~t~vi~v~~t~~nS~llt~D~~  196 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA------------PVTGVIFVGRTSQNSKLLTSDTG  196 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC------------ccceEEEEEEeCCCcEEEEccCC
Confidence            457899999999999999999999999999999999888876110            22334445556666677777666


Q ss_pred             CeE
Q 043942          161 GKV  163 (216)
Q Consensus       161 ~~i  163 (216)
                      |.+
T Consensus       197 Gsf  199 (1206)
T KOG2079|consen  197 GSF  199 (1206)
T ss_pred             Cce
Confidence            644

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.69  E-value=0.0038  Score=38.58  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=45.9

Q ss_pred             eEEEEEcc---CC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942           17 FSSLAFST---DG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT   92 (216)
Q Consensus        17 v~~~~~s~---~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~   92 (216)
                      |++|++..   || +.|+.|+.|..||+|+-.                            ..+..+. ....|+++.-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----------------------------e~~~Ei~-e~~~v~~L~~~~   52 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----------------------------EIVAEIT-ETDKVTSLCSLG   52 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----------------------------cEEEEEe-cccceEEEEEcC
Confidence            56777665   33 579999988888888732                            2334444 345677777665


Q ss_pred             CCcEEEEecCCCeEEEEeCC
Q 043942           93 DGKTICTGSDNATLSIWNPK  112 (216)
Q Consensus        93 ~~~~l~t~~~d~~i~~wd~~  112 (216)
                      . ..++.+-.+|+|-+|+-.
T Consensus        53 ~-~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen   53 G-GRFAYALANGTVGVYDRS   71 (111)
T ss_pred             C-CEEEEEecCCEEEEEeCc
Confidence            4 568888899999999753

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.68  E-value=0.011  Score=43.47  Aligned_cols=35  Identities=14%  Similarity=0.146  Sum_probs=27.0

Q ss_pred             CCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942          178 IRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF  213 (216)
Q Consensus       178 ~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~  213 (216)
                      ...||+..+. +.|-||++.+++..+.++....+..
T Consensus       237 ~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~~l  271 (275)
T PF00780_consen  237 SSPYLIAFSS-NSIEVRSLETGELVQTIPLPNIRLL  271 (275)
T ss_pred             ECCEEEEECC-CEEEEEECcCCcEEEEEECCCEEEE
Confidence            3457777665 5599999999999988887777654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.68  E-value=0.00022  Score=36.87  Aligned_cols=30  Identities=20%  Similarity=0.183  Sum_probs=27.7

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEEC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDT   43 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~   43 (216)
                      ...|.+++|+|...+||.+..+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            457999999999999999999999999988

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.67  E-value=0.0025  Score=51.82  Aligned_cols=152  Identities=16%  Similarity=0.170  Sum_probs=79.7

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK   95 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~   95 (216)
                      .+...+++|+|+.++..-...     | ....            ....+.+++.. +.......+  ...+.-.|+|+|+
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~-----~-~~~d------------~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~  409 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLG-----R-GAPD------------PASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDAD  409 (591)
T ss_pred             CcccceECCCCCEEEEEEeec-----C-CCCC------------cceEEEEEeCC-CcceeeecC--CCCCCceECCCCC
Confidence            566778888888776554200     0 0000            12344455542 222222222  2378889999998


Q ss_pred             EEEEecCC-CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------
Q 043942           96 TICTGSDN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------  163 (216)
Q Consensus        96 ~l~t~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------  163 (216)
                      .+++.... ..+++.+-.....+............       .....|..+.|+|||..++... ++.+           
T Consensus       410 ~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G  481 (591)
T PRK13616        410 AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDG  481 (591)
T ss_pred             ceEEEecCcceEEEeccCCCceEEEEeccCchhhh-------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCC
Confidence            88877543 22333332222222222211100000       1346799999999999877654 3454           


Q ss_pred             -----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          164 -----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       164 -----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                                 ..-...+.++.|..++.++ .+..++.-.+|.+.
T Consensus       482 ~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        482 QYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             ceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence                       1112235788999998855 44445555566654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.67  E-value=0.0095  Score=42.56  Aligned_cols=52  Identities=13%  Similarity=0.123  Sum_probs=36.1

Q ss_pred             CCCceeEEeeccccceE-EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC
Q 043942            2 NQGDWASEILGHKDSFS-SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG   54 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~   54 (216)
                      ++|+....+..-. .|. .....+++.++..++.|++.+..|..+...+.+.+.
T Consensus        81 ~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   81 KTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             cchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            4565555554332 233 244567889999999999999999998877766544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.65  E-value=0.011  Score=42.66  Aligned_cols=104  Identities=18%  Similarity=0.236  Sum_probs=74.4

Q ss_pred             ceEEEEEccCCCEEEEEcCCC--cEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeee
Q 043942           16 SFSSLAFSTDGQLLASGGFHG--LVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNM   77 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~   77 (216)
                      ....+.|..+|.++-+.+.-|  .|+.+|+.+++.......+..--                .++...+||..+.+.+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence            355788877888888888766  79999999999888777665422                889999999999888888


Q ss_pred             eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           78 FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        78 ~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +.- .+.=..++  .+++.|+.......++++|..+.+....+..
T Consensus       126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred             Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence            763 34456666  4677777777788999999988877666654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0015  Score=50.90  Aligned_cols=118  Identities=17%  Similarity=0.253  Sum_probs=82.6

Q ss_pred             EEEEcCCCcEEEEECCCCceEEEEeCCCCc-c---------------------cCcEEEEEECCC-cc-eeeeeeccC--
Q 043942           29 LASGGFHGLVQNRDTSSRNLQCTVEGPRGG-I---------------------EDSTVWMWNADR-GA-YLNMFSGHG--   82 (216)
Q Consensus        29 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~---------------------~~~~v~i~d~~~-~~-~~~~~~~~~--   82 (216)
                      |.++.....++--|++.|+.+.++..+... .                     .++.|+-||++- +. .+...++|.  
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            445556677888899999988888766551 1                     888999999883 22 333334443  


Q ss_pred             --CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942           83 --SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus        83 --~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                        ....|.+-..+| ++++|+.+|.|++||- .+.. ...++.               ...+|..+..+.+|.++++.+.
T Consensus       429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPg---------------LG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPG---------------LGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             cccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccc---------------cCCceeeEEeeccCcEEEEecc
Confidence              345566655444 8999999999999997 4443 344554               7889999999999998876655


Q ss_pred             cCeE
Q 043942          160 DGKV  163 (216)
Q Consensus       160 ~~~i  163 (216)
                      .-.+
T Consensus       492 tyLl  495 (644)
T KOG2395|consen  492 TYLL  495 (644)
T ss_pred             cEEE
Confidence            4433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00052  Score=54.25  Aligned_cols=69  Identities=22%  Similarity=0.283  Sum_probs=54.4

Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE-EEEeCCCCcEEEEeccc
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT-CLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~  160 (216)
                      ...+.-+.|+|.-..+|++..+|.+.+..+. .+.+..++.               +...++ +++|.|||+.+++|-.|
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~---------------p~~~v~~sL~W~~DGkllaVg~kd   83 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI---------------PGENVTASLCWRPDGKLLAVGFKD   83 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC---------------CCCccceeeeecCCCCEEEEEecC
Confidence            3457889999999999999999999999888 777777764               444454 88888888888888888


Q ss_pred             CeEEee
Q 043942          161 GKVDGH  166 (216)
Q Consensus       161 ~~i~~~  166 (216)
                      |.+.-|
T Consensus        84 G~I~L~   89 (665)
T KOG4640|consen   84 GTIRLH   89 (665)
T ss_pred             CeEEEE
Confidence            877444

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.57  E-value=0.013  Score=45.73  Aligned_cols=48  Identities=10%  Similarity=0.263  Sum_probs=36.5

Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK  112 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~  112 (216)
                      .|.+|+.. |+.+.++.-..+.+.++.|..+.. |+.-..||.++++|+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC
Confidence            58888876 556666554448899999998655 4455689999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.55  E-value=0.015  Score=48.52  Aligned_cols=124  Identities=15%  Similarity=0.276  Sum_probs=85.2

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC-------CcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccc
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD-------GKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNY  131 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~  131 (216)
                      ....|+-.|+++|+.+..+..+... .-..+.|+       ....+.|-.++.+..||.+-... +..-..  ...    
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~--k~Y----  574 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS--KQY----  574 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc--ccc----
Confidence            5678899999999999999877653 23344443       33456677788999999995331 111000  000    


Q ss_pred             eEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          132 WMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                           .......|++-+.+| +||+|+.+|.|              .+...+|.++..+.||+++++.+ +..+.+++..
T Consensus       575 -----~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  575 -----SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             -----ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence                 033455667666655 68899999988              45578999999999999987654 6778888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.53  E-value=0.00048  Score=35.62  Aligned_cols=34  Identities=12%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN  116 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~  116 (216)
                      ...|.+++|+|...++|.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 4543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.45  E-value=0.025  Score=41.97  Aligned_cols=144  Identities=10%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT   92 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~   92 (216)
                      -.+.+..+.-++||+++++++.-....-||.                          ....-...-+.-...|..+.|.|
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~--------------------------G~~~w~~~~r~~~~riq~~gf~~  196 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDP--------------------------GQTTWQPHNRNSSRRIQSMGFSP  196 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-T--------------------------T-SS-EEEE--SSS-EEEEEE-T
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecC--------------------------CCccceEEccCccceehhceecC
Confidence            3456777777888887777764333334442                          21111111222356799999999


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------
Q 043942           93 DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------  163 (216)
Q Consensus        93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------  163 (216)
                      ++.+.+.+ ..+.|++=+..  .....+....... .       ...-.+..++|.++....++|+....+         
T Consensus       197 ~~~lw~~~-~Gg~~~~s~~~--~~~~~w~~~~~~~-~-------~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW  265 (302)
T PF14870_consen  197 DGNLWMLA-RGGQIQFSDDP--DDGETWSEPIIPI-K-------TNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTW  265 (302)
T ss_dssp             TS-EEEEE-TTTEEEEEE-T--TEEEEE---B-TT-S-------S--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-
T ss_pred             CCCEEEEe-CCcEEEEccCC--CCccccccccCCc-c-------cCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccc
Confidence            98877765 88888887722  1112221100000 0       033457899999887777766655444         


Q ss_pred             ------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          164 ------DGHIDAIQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       164 ------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                            ..-...++.+.|.++.+-++. +.+|.+.-|
T Consensus       266 ~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  266 QKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             eECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence                  122346889999776555554 468877655

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.45  E-value=0.0009  Score=51.04  Aligned_cols=118  Identities=17%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             ccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC
Q 043942           23 STDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD  102 (216)
Q Consensus        23 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~  102 (216)
                      |||+++++....  .-+.|...               ..+...+||+++++....... ...+....|+|+|+.++... 
T Consensus         1 S~d~~~~l~~~~--~~~~~r~s---------------~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-   61 (353)
T PF00930_consen    1 SPDGKFVLFATN--YTKQWRHS---------------FKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-   61 (353)
T ss_dssp             -TTSSEEEEEEE--EEEESSSE---------------EEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-
T ss_pred             CCCCCeEEEEEC--cEEeeeec---------------cceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-
Confidence            578887776553  22233221               456788899988765544333 56788999999999998875 


Q ss_pred             CCeEEEEeCCCCceeEEeecccccccccceEE--Eeee-ecCeEEEEeCCCCcEEEEeccc
Q 043942          103 NATLSIWNPKGGENFHAIRRSSLEFSLNYWMI--CTSL-YDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus       103 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      ++.|.+++..++...+..... ......+..-  .... -+.-..+-|+||+++|+....|
T Consensus        62 ~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   62 DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            678999998877444322221 1000000000  0000 1234568899999998865443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.43  E-value=0.016  Score=48.17  Aligned_cols=95  Identities=11%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      ...|..+.++|+|++++..+..+ |.|-.+-. ......+..               ....+.|-.+.-+..++.     
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~---------------g~~~i~Crt~~v~~~~~~-----  142 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFED---------------GKKEINCRTVPVDERFFT-----  142 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccC---------------CCcceeEEEEEechhhcc-----
Confidence            35788999999999999888755 55544432 111112221               223344444333333332     


Q ss_pred             CeEEeeeCCEEEEEEecC---CCeEEEEeCCCcEEEEEccccc
Q 043942          161 GKVDGHIDAIQSLSVSAI---RESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       161 ~~i~~~~~~i~~~~~~~~---~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                         ......|..+.|+|.   +..|+.-..|+++|+||+...+
T Consensus       143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence               124567889999986   4788888889999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.042  Score=45.64  Aligned_cols=170  Identities=12%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             eEEeeccccc-eEEEEEccCCCEEEEEcCCC-----cEEEEECCCC------ceEE--EEe---CCCCc--c--------
Q 043942            7 ASEILGHKDS-FSSLAFSTDGQLLASGGFHG-----LVQNRDTSSR------NLQC--TVE---GPRGG--I--------   59 (216)
Q Consensus         7 ~~~~~~h~~~-v~~~~~s~~~~~l~s~~~d~-----~v~vwd~~~~------~~~~--~~~---~~~~~--~--------   59 (216)
                      ++.++++... |..+....+.++|++.+.|+     .+++|+++..      .++.  .+.   .+..+  .        
T Consensus        57 ~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~  136 (933)
T KOG2114|consen   57 IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED  136 (933)
T ss_pred             eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc
Confidence            3566677666 55554444557888877664     4899998643      2231  111   22111  1        


Q ss_pred             --------cCcEEEEEECC----CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeeccccc
Q 043942           60 --------EDSTVWMWNAD----RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLE  126 (216)
Q Consensus        60 --------~~~~v~i~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~  126 (216)
                              .+|.|..+.-.    .+....-...-..+|+.+++..++..++.......|.+|.+....+ ...+..    
T Consensus       137 l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~----  212 (933)
T KOG2114|consen  137 LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN----  212 (933)
T ss_pred             ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeecc----
Confidence                    78888877643    1221111222346899999999888744444556799999884332 333443    


Q ss_pred             ccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-EeeeCCEEEEEEecCCCeEEEEeCCCcE
Q 043942          127 FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-DGHIDAIQSLSVSAIRESLVSVSVDGTA  191 (216)
Q Consensus       127 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-~~~~~~i~~~~~~~~~~~l~s~~~d~~v  191 (216)
                                 +..+++|..+++....+++++.+..- ....+.=.+.+|.-.++..+....-|.+
T Consensus       213 -----------~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~  267 (933)
T KOG2114|consen  213 -----------NGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLL  267 (933)
T ss_pred             -----------CCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEE
Confidence                       77788888888766645555554433 2222222344554344444433333333

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.27  E-value=0.045  Score=40.89  Aligned_cols=169  Identities=14%  Similarity=0.133  Sum_probs=92.9

Q ss_pred             EEEEccCCCEEE-EEcCCCcEEEEECCCCceEE-EEeCCCCcc-----------cCcEEEEEECCCcceeeeee----c-
Q 043942           19 SLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQC-TVEGPRGGI-----------EDSTVWMWNADRGAYLNMFS----G-   80 (216)
Q Consensus        19 ~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~-~~~~~~~~~-----------~~~~v~i~d~~~~~~~~~~~----~-   80 (216)
                      +..|.++...|+ +--..+.|.-|+..+++... .........           .+..+.+++.+++..+..+.    + 
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~  108 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGL  108 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCC
Confidence            345777666444 44456778888887653322 211111111           45556667765554422221    1 


Q ss_pred             cCCCeeEEEEcCCCcEEEEecC-----------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           81 HGSGLTCGDFTTDGKTICTGSD-----------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      .....+.+...|+|.+.++...           -|.++.+|. .+.....+..               +-...+.++|||
T Consensus       109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~---------------~~~~~NGla~Sp  172 (307)
T COG3386         109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD---------------DLTIPNGLAFSP  172 (307)
T ss_pred             CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC---------------cEEecCceEECC
Confidence            1245678888999987776544           122333333 3444333332               345567899999


Q ss_pred             CCcEEEEeccc-CeE---------------------EeeeCCEEEEEEecCCCeEEEEeCCC-cEEEEEcccccceee
Q 043942          150 TSKYLVTGCVD-GKV---------------------DGHIDAIQSLSVSAIRESLVSVSVDG-TARVFEIAEFRRATK  204 (216)
Q Consensus       150 ~~~~l~~~~~~-~~i---------------------~~~~~~i~~~~~~~~~~~l~s~~~d~-~v~vw~~~~~~~~~~  204 (216)
                      |++.++.+... +.+                     ....+..-.++...+|.+-+++-.+| .|.+|+.. ++++..
T Consensus       173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~  249 (307)
T COG3386         173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGE  249 (307)
T ss_pred             CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEE
Confidence            99877766553 333                     11123344555566677665444444 89999887 665543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.25  E-value=0.058  Score=41.76  Aligned_cols=163  Identities=13%  Similarity=0.125  Sum_probs=79.4

Q ss_pred             CCCEEEEEc-CCCcEEEEECCC----CceEEEEeC------------------CCCcc-----------cCcEEEEEECC
Q 043942           25 DGQLLASGG-FHGLVQNRDTSS----RNLQCTVEG------------------PRGGI-----------EDSTVWMWNAD   70 (216)
Q Consensus        25 ~~~~l~s~~-~d~~v~vwd~~~----~~~~~~~~~------------------~~~~~-----------~~~~v~i~d~~   70 (216)
                      +.++|+..+ ..+.|+|.|..+    .+..+.++.                  +.+.+           ..|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666655 678999999874    344444432                  00101           45567777877


Q ss_pred             CcceeeeeeccC---CCeeEEEEcCCCcEEEEecC--------------------CCeEEEEeCCCCceeEEeecccccc
Q 043942           71 RGAYLNMFSGHG---SGLTCGDFTTDGKTICTGSD--------------------NATLSIWNPKGGENFHAIRRSSLEF  127 (216)
Q Consensus        71 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~t~~~--------------------d~~i~~wd~~~~~~~~~~~~~~~~~  127 (216)
                      +.+.........   ..-..+-|.|..+.++|...                    -+++.+||+.+.+.++++....   
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~---  242 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE---  242 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T---
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC---
Confidence            776666665432   23457778888888887642                    3679999999999999987632   


Q ss_pred             cccceEEEeeeecCeEEEEe--CCCCcEEEEec-ccCeE---------------------E---------------eeeC
Q 043942          128 SLNYWMICTSLYDGVTCLSW--PGTSKYLVTGC-VDGKV---------------------D---------------GHID  168 (216)
Q Consensus       128 ~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~-~~~~i---------------------~---------------~~~~  168 (216)
                                .......+.|  .|+..+=++++ ....|                     .               .-..
T Consensus       243 ----------~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~  312 (461)
T PF05694_consen  243 ----------EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP  312 (461)
T ss_dssp             ----------TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred             ----------CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence                      1112333444  34443322221 12222                     1               1124


Q ss_pred             CEEEEEEecCCCeEEEEeC-CCcEEEEEccccc
Q 043942          169 AIQSLSVSAIRESLVSVSV-DGTARVFEIAEFR  200 (216)
Q Consensus       169 ~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~~~  200 (216)
                      -|+.+..|.|.++|..+.. +|.++.||+....
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            4799999999999987665 8999999998744

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.026  Score=42.11  Aligned_cols=117  Identities=15%  Similarity=0.089  Sum_probs=73.2

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCC-CcEEEEECCC--CceEEEEeCCCCcccCcEEEEEECCCcceeeeeec
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFH-GLVQNRDTSS--RNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSG   80 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~~v~vwd~~~--~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~   80 (216)
                      |..++.+..|-..-+.++||||++.|..+... +.|..|++..  +..                     ........+..
T Consensus       152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~---------------------~~~~~~~~~~~  210 (307)
T COG3386         152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI---------------------GGRRGFVDFDE  210 (307)
T ss_pred             CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc---------------------CCcceEEEccC
Confidence            44555555656667889999999877776643 5666665542  110                     00111122223


Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCC-eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe-CCCCcEEEEe
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNA-TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW-PGTSKYLVTG  157 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~  157 (216)
                      ..+..-.++...+|.+.+++...| .|..|+.+ ++.+..+..               ....+++++| .|+.+.|+..
T Consensus       211 ~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---------------P~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         211 EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---------------PVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC---------------CCCCCccceEeCCCcCEEEEE
Confidence            445666788888898886555554 89999999 988888875               4356677777 4555554443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.21  E-value=0.016  Score=40.78  Aligned_cols=100  Identities=14%  Similarity=0.212  Sum_probs=66.5

Q ss_pred             EEEEEccCCCEEE-EEcCCCcEEEEE--CCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942           18 SSLAFSTDGQLLA-SGGFHGLVQNRD--TSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG   94 (216)
Q Consensus        18 ~~~~~s~~~~~l~-s~~~d~~v~vwd--~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~   94 (216)
                      +.++|+.+.+.+. +-+.+-.|.-||  ..+|..            .+.=.++|++..++...+..     -.++...+|
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~------------snr~~i~dlrk~~~~e~~~P-----DGm~ID~eG  223 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL------------SNRKVIFDLRKSQPFESLEP-----DGMTIDTEG  223 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccc------------cCcceeEEeccCCCcCCCCC-----CcceEccCC
Confidence            4567776655443 445566676666  555543            12223567765544333321     234446688


Q ss_pred             cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           95 KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        95 ~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ++.+++-..++|...|..+|+.+.++..               ....+++++|--
T Consensus       224 ~L~Va~~ng~~V~~~dp~tGK~L~eikl---------------Pt~qitsccFgG  263 (310)
T KOG4499|consen  224 NLYVATFNGGTVQKVDPTTGKILLEIKL---------------PTPQITSCCFGG  263 (310)
T ss_pred             cEEEEEecCcEEEEECCCCCcEEEEEEc---------------CCCceEEEEecC
Confidence            8888888899999999999999999987               678899999953

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.21  E-value=0.021  Score=46.54  Aligned_cols=97  Identities=16%  Similarity=0.128  Sum_probs=66.3

Q ss_pred             CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe--CCCCcEEEEecccC
Q 043942           84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW--PGTSKYLVTGCVDG  161 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~~  161 (216)
                      ...-+.-+.-++..++-+....+.+||.+.+....+...              ...+.|.++.|  .|+++.+++.+..+
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--------------~~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--------------SEDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--------------cCCCceeeceeeecCCCCEEEEEEcCc
Confidence            344455555566555666667899999998774333221              14788999999  47888877777776


Q ss_pred             eE-------------------------Eeee-CCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          162 KV-------------------------DGHI-DAIQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       162 ~i-------------------------~~~~-~~i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                      .+                         ..+. .+|.+..|.++|.+++.+|  +.+.|++-
T Consensus        97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen   97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            66                         2233 6889999999998877654  56777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.18  E-value=0.0093  Score=51.00  Aligned_cols=65  Identities=15%  Similarity=0.220  Sum_probs=52.8

Q ss_pred             CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe
Q 043942           83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK  162 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~  162 (216)
                      ..|.++.|..+.+.++.+...|.|.+-|..+......-.                -...|.+++|+||+..++..+..+.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~----------------vd~GI~aaswS~Dee~l~liT~~~t  132 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN----------------VDNGISAASWSPDEELLALITGRQT  132 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee----------------ccCceEEEeecCCCcEEEEEeCCcE
Confidence            579999999999999999999999999877654332222                5678999999999999988888776


Q ss_pred             E
Q 043942          163 V  163 (216)
Q Consensus       163 i  163 (216)
                      +
T Consensus       133 l  133 (1265)
T KOG1920|consen  133 L  133 (1265)
T ss_pred             E
Confidence            6

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.073  Score=41.20  Aligned_cols=175  Identities=16%  Similarity=0.152  Sum_probs=112.2

Q ss_pred             EEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEEECCCcceeeee
Q 043942           18 SSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        18 ~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~d~~~~~~~~~~   78 (216)
                      ..++.++.+. .+++...+..|.+.|..+.+..........+.                  .++++.+.|..+.+.+...
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            4677888776 45555556899999988777766665433222                  2577777777777777664


Q ss_pred             eccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG  157 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  157 (216)
                      .--..+ ..++++|+|..+..+. .++.+.+.|........ -.....          .........+.++|+|.++.+.
T Consensus       157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~----------~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSL----------VGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccc----------cccCCCCceEEECCCCCEEEEE
Confidence            422233 8999999999666554 78999999977554442 110000          0023445678889999866655


Q ss_pred             cccC---eE----------EeeeC-----CEEEEEEecCCCeEEEEeC-CCcEEEEEcccccceee
Q 043942          158 CVDG---KV----------DGHID-----AIQSLSVSAIRESLVSVSV-DGTARVFEIAEFRRATK  204 (216)
Q Consensus       158 ~~~~---~i----------~~~~~-----~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~~~~~~~  204 (216)
                      ....   .+          .....     ....+..+|+|+++..... .+.+.+-|..+......
T Consensus       225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            4433   44          22211     2345789999998887744 58888888877665543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.09  E-value=0.063  Score=39.22  Aligned_cols=148  Identities=14%  Similarity=0.134  Sum_probs=89.0

Q ss_pred             eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----c-------------cCcEEEEEECCCcc
Q 043942           11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----I-------------EDSTVWMWNADRGA   73 (216)
Q Consensus        11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----~-------------~~~~v~i~d~~~~~   73 (216)
                      .+-...|.++.|+|+.+.|++......-.|+=..+|+.+.++......    +             .++.++++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            344456999999999999998888888888888889998887643221    1             55566666554331


Q ss_pred             eee-----e--ee--cc-CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           74 YLN-----M--FS--GH-GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        74 ~~~-----~--~~--~~-~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      .+.     .  +.  .+ +.....++|.|....|..+=..+-+.+|.+..................+.     -.-..+.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~-----~f~~DvS  236 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD-----LFVLDVS  236 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccc-----eEeeccc
Confidence            111     1  11  12 45678999999888888887777788877663321111111000000000     0234567


Q ss_pred             EEEeCCC-CcEEEEecccCeE
Q 043942          144 CLSWPGT-SKYLVTGCVDGKV  163 (216)
Q Consensus       144 ~~~~~~~-~~~l~~~~~~~~i  163 (216)
                      .+.|++. +..++.+.+++.+
T Consensus       237 gl~~~~~~~~LLVLS~ESr~l  257 (316)
T COG3204         237 GLEFNAITNSLLVLSDESRRL  257 (316)
T ss_pred             cceecCCCCcEEEEecCCceE
Confidence            7788764 4455555555555

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.06  E-value=0.064  Score=38.72  Aligned_cols=107  Identities=11%  Similarity=0.204  Sum_probs=66.6

Q ss_pred             eeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           77 MFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                      .+.+-...+..++|+|+.+ ++++....+.|.-++.. |+.+..++..              .....-.+++..++.+++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~--------------g~~D~EgI~y~g~~~~vl   80 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD--------------GFGDYEGITYLGNGRYVL   80 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S--------------S-SSEEEEEE-STTEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC--------------CCCCceeEEEECCCEEEE
Confidence            3445555699999999754 66777788999888875 7877777642              234566777777776666


Q ss_pred             EecccCeE-------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          156 TGCVDGKV-------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       156 ~~~~~~~i-------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      +.-.++.+                         ..+...+-.++|+|.++.|+.+-+..-..+|.+..
T Consensus        81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            65555554                         12345689999999877777776666666776654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.04  E-value=0.00041  Score=55.03  Aligned_cols=105  Identities=20%  Similarity=0.331  Sum_probs=72.6

Q ss_pred             eeccCCCeeEEEEcC-CCcEEEEec----CCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           78 FSGHGSGLTCGDFTT-DGKTICTGS----DNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        78 ~~~~~~~v~~~~~~~-~~~~l~t~~----~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      ..++....++++|++ |.+.||.|-    .|..+.+||+.++-.  ......     .       .+......+++|-.+
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f-----s-------~~~l~gqns~cwlrd  165 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF-----S-------SSTLDGQNSVCWLRD  165 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc-----c-------cccccCccccccccC
Confidence            456778899999998 556676663    456699999987632  111110     0       013345568899888


Q ss_pred             CcEEEEecccCeE-------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEE
Q 043942          151 SKYLVTGCVDGKV-------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFE  195 (216)
Q Consensus       151 ~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~  195 (216)
                      .+.+.+|.....+             ......+..+..+| .+.|+++.. ||.|-+||
T Consensus       166 ~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  166 TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD  223 (783)
T ss_pred             cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence            8888888777655             22234677788888 778888776 99999999

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.02  E-value=0.033  Score=43.56  Aligned_cols=102  Identities=16%  Similarity=0.152  Sum_probs=57.6

Q ss_pred             eEEEEEccCCCEEEEE-cCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeee-eeccCCCeeEEEEcCCC
Q 043942           17 FSSLAFSTDGQLLASG-GFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNM-FSGHGSGLTCGDFTTDG   94 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~   94 (216)
                      +....+||+|+++|.+ +..|.                      ....++++|+++++.+.. +...  ....+.|.+++
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~----------------------e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~  181 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGS----------------------EWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDG  181 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTS----------------------SEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTS
T ss_pred             eeeeeECCCCCEEEEEecCCCC----------------------ceEEEEEEECCCCcCcCCccccc--ccceEEEeCCC
Confidence            3457889999888755 33332                      345577777777755432 2211  12349999998


Q ss_pred             cEEEEecC-----------CCeEEEEeCCCCcee--EEeecccccccccceEEEeeeecC-eEEEEeCCCCcEEEE
Q 043942           95 KTICTGSD-----------NATLSIWNPKGGENF--HAIRRSSLEFSLNYWMICTSLYDG-VTCLSWPGTSKYLVT  156 (216)
Q Consensus        95 ~~l~t~~~-----------d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~  156 (216)
                      +.++....           ...|+.|.+.+....  ..+...              .... ...+..++++++++.
T Consensus       182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~--------------~~~~~~~~~~~s~d~~~l~i  243 (414)
T PF02897_consen  182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP--------------DEPFWFVSVSRSKDGRYLFI  243 (414)
T ss_dssp             SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T--------------TCTTSEEEEEE-TTSSEEEE
T ss_pred             CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec--------------CCCcEEEEEEecCcccEEEE
Confidence            87665442           334788888776443  333321              1122 456667777777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.00  E-value=0.015  Score=47.38  Aligned_cols=92  Identities=13%  Similarity=0.135  Sum_probs=58.8

Q ss_pred             CCeeEEEEcCCCcEEEEec------CC--CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           83 SGLTCGDFTTDGKTICTGS------DN--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~------~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      ..+...+++|+|+.++...      .|  ..+.+++.. +.. ..+.                .......-.|+|+|..+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt----------------~g~~~t~PsWspDG~~l  411 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL----------------EGHSLTRPSWSLDADAV  411 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee----------------cCCCCCCceECCCCCce
Confidence            4678899999999887654      23  346665643 222 2222                12236778889988876


Q ss_pred             EEeccc------------CeE-----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942          155 VTGCVD------------GKV-----------DGHIDAIQSLSVSAIRESLVSVSVDGTARV  193 (216)
Q Consensus       155 ~~~~~~------------~~i-----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~v  193 (216)
                      ++....            +.+           ......|..+.|||||..++... ++.|++
T Consensus       412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             EEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            665432            122           11245799999999999887655 577776

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.94  E-value=0.038  Score=34.22  Aligned_cols=88  Identities=20%  Similarity=0.227  Sum_probs=57.2

Q ss_pred             eeEEEEcC---CC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           85 LTCGDFTT---DG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        85 v~~~~~~~---~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      |+++++..   +| +.|++|+.|..|++|+-.  ..+.++.                ..+.+..++-... ..++.+-.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~----------------e~~~v~~L~~~~~-~~F~Y~l~N   62 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT----------------ETDKVTSLCSLGG-GRFAYALAN   62 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe----------------cccceEEEEEcCC-CEEEEEecC
Confidence            55666544   33 589999999999999743  6666666                4567788776665 558888889


Q ss_pred             CeE-----------EeeeCCEEEEEEec-CC---CeEEEEeCCCcE
Q 043942          161 GKV-----------DGHIDAIQSLSVSA-IR---ESLVSVSVDGTA  191 (216)
Q Consensus       161 ~~i-----------~~~~~~i~~~~~~~-~~---~~l~s~~~d~~v  191 (216)
                      |++           ......++++++.. ++   .-|++|=.+|.|
T Consensus        63 GTVGvY~~~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   63 GTVGVYDRSQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             CEEEEEeCcceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            988           12223355555433 32   246666666665

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.94  E-value=0.087  Score=38.30  Aligned_cols=133  Identities=16%  Similarity=0.150  Sum_probs=79.6

Q ss_pred             ceEEEEEccCCCEEEEEc-CCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942           16 SFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG   94 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~   94 (216)
                      .+.+.+++++++.+|... .++                        ...++++.....  ..... ....+..-.|++++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~------------------------~~~L~~~~~~~~--~~~~~-~g~~l~~PS~d~~g   77 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDG------------------------GRSLYVGPAGGP--VRPVL-TGGSLTRPSWDPDG   77 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCC------------------------CCEEEEEcCCCc--ceeec-cCCccccccccCCC
Confidence            688999999998877655 111                        122233322211  11111 22367788999998


Q ss_pred             cEEEEecCCCeEEEEe-CCCCcee-EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec---ccCeE------
Q 043942           95 KTICTGSDNATLSIWN-PKGGENF-HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC---VDGKV------  163 (216)
Q Consensus        95 ~~l~t~~~d~~i~~wd-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~i------  163 (216)
                      ...+....+...+++. ..++... .......             ....|..+.++|||..++...   .++.+      
T Consensus        78 ~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~-------------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   78 WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPG-------------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             CEEEEEcCCCceEEEEecCCCcceeEEecccc-------------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence            7777766666666664 3333322 2222100             112899999999999877654   23444      


Q ss_pred             -----------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942          164 -----------------DGHIDAIQSLSVSAIRESLVSVSVD  188 (216)
Q Consensus       164 -----------------~~~~~~i~~~~~~~~~~~l~s~~~d  188 (216)
                                       ......++++.|.+++.+++.+...
T Consensus       145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence                             1223578999999999987766553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.061  Score=42.46  Aligned_cols=98  Identities=12%  Similarity=0.100  Sum_probs=63.2

Q ss_pred             CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942           84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      .|..+..++.|..++-++.+|.+-++=.+..-....+..               ....|+|=.++-+.+ +++.+     
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eD---------------gk~~v~CRt~~i~~~-~ftss-----  163 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFED---------------GKSTVNCRTTPVAER-FFTSS-----  163 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecC---------------CCceEEEEeecccce-eeccC-----
Confidence            567788899999999999998766654333222333332               233355555544444 33332     


Q ss_pred             EeeeCCEEEEEEecCC---CeEEEEeCCCcEEEEEcccccceee
Q 043942          164 DGHIDAIQSLSVSAIR---ESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       164 ~~~~~~i~~~~~~~~~---~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                        ..-.+..++|+|+.   ..|..-+.|+.+|+||+.....+..
T Consensus       164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl  205 (741)
T KOG4460|consen  164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL  205 (741)
T ss_pred             --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence              22356788999976   5677777899999999987665543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=0.11  Score=44.56  Aligned_cols=44  Identities=25%  Similarity=0.319  Sum_probs=37.2

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG   57 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~   57 (216)
                      .++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            46899999999999999999999999999888877776665444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.77  E-value=0.17  Score=39.28  Aligned_cols=141  Identities=13%  Similarity=0.075  Sum_probs=66.6

Q ss_pred             eEEEEEccCCCEEEEEc--------------------CCCcEEEEECCCCceEEEEeCCCCcc-----------------
Q 043942           17 FSSLAFSTDGQLLASGG--------------------FHGLVQNRDTSSRNLQCTVEGPRGGI-----------------   59 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~--------------------~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------   59 (216)
                      -+..-|.|..+.++|..                    ....+.+||+.+.+.++++.......                 
T Consensus       183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF  262 (461)
T PF05694_consen  183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF  262 (461)
T ss_dssp             ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred             CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence            45677888888888875                    24579999999999999998765432                 


Q ss_pred             ----cCcEEEEEEC-CCcc----eeeeeec-----------------cCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCC
Q 043942           60 ----EDSTVWMWNA-DRGA----YLNMFSG-----------------HGSGLTCGDFTTDGKTICTGS-DNATLSIWNPK  112 (216)
Q Consensus        60 ----~~~~v~i~d~-~~~~----~~~~~~~-----------------~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~  112 (216)
                          -.++|..|-- ..++    .+..+..                 -..-|+.|..|.|.++|..++ .+|.++.||+.
T Consensus       263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence                2333333322 2221    1222211                 134579999999999987655 78999999998


Q ss_pred             CCceeE---Eeeccc-ccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942          113 GGENFH---AIRRSS-LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG  157 (216)
Q Consensus       113 ~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  157 (216)
                      +.....   ++.... +.........-....+...-+..|.||+.++..
T Consensus       343 DP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  343 DPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             STTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            754332   222111 100000000000023345667788888877654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.69  E-value=0.1  Score=41.88  Aligned_cols=105  Identities=10%  Similarity=0.028  Sum_probs=61.8

Q ss_pred             CCeeEEEEcCC----CcEEEEecCCCeEEEEeCCC-----CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942           83 SGLTCGDFTTD----GKTICTGSDNATLSIWNPKG-----GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus        83 ~~v~~~~~~~~----~~~l~t~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                      ..|..+.|.|-    ...++..-..+.|.||.+..     ++.+.....+-.+          ...--...+.|+|....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e----------~~pvLpQGCVWHPk~~i  126 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE----------PFPVLPQGCVWHPKKAI  126 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC----------CcccCCCcccccCCCce
Confidence            45899999984    33455556778899998862     2222221110000          01111245678887777


Q ss_pred             EEEecc-cCeE--------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEcc
Q 043942          154 LVTGCV-DGKV--------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIA  197 (216)
Q Consensus       154 l~~~~~-~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~  197 (216)
                      |++-.. |-.+              ....+.|.+.+|.+||+.|+.+- ..=.-++||-.
T Consensus       127 L~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  127 LTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            665333 3323              33457899999999998877553 33345788854

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.61  E-value=0.17  Score=39.36  Aligned_cols=45  Identities=16%  Similarity=0.062  Sum_probs=32.1

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT   51 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~   51 (216)
                      +..-++...++|++++.|.=| ++|.|..+|.+.|.|++....+..
T Consensus        78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEee
Confidence            344455668899999998554 899999999999999987766655

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.53  E-value=0.23  Score=37.49  Aligned_cols=122  Identities=14%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             CCEEEEEcC----------CCcEEEEECCCC----ceEE---EEeCCCCcc-------------cCcEEEEEECCCcc-e
Q 043942           26 GQLLASGGF----------HGLVQNRDTSSR----NLQC---TVEGPRGGI-------------EDSTVWMWNADRGA-Y   74 (216)
Q Consensus        26 ~~~l~s~~~----------d~~v~vwd~~~~----~~~~---~~~~~~~~~-------------~~~~v~i~d~~~~~-~   74 (216)
                      ..+|+.|..          .|.+.++++...    ..+.   .... .+++             .++.|.+|++...+ .
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~-~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l  120 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV-KGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTL  120 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE-SS-EEEEEEETTEEEEEETTEEEEEEEETTSSE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee-cCcceEhhhhCCEEEEeecCEEEEEEccCcccc
Confidence            467777652          288999999884    1221   1221 1112             78899999998776 3


Q ss_pred             eeeeec-cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           75 LNMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        75 ~~~~~~-~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      .....- ....+.++...  +++++.|...+.+.++..+. +..+..+....             ....++++.+-+++.
T Consensus       121 ~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~-------------~~~~v~~~~~l~d~~  185 (321)
T PF03178_consen  121 LKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDY-------------QPRWVTAAEFLVDED  185 (321)
T ss_dssp             EEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEES-------------S-BEEEEEEEE-SSS
T ss_pred             hhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecC-------------CCccEEEEEEecCCc
Confidence            333221 22345555544  66999999888888875543 22233332110             234467777765556


Q ss_pred             EEEEecccCeE
Q 043942          153 YLVTGCVDGKV  163 (216)
Q Consensus       153 ~l~~~~~~~~i  163 (216)
                      .++.+..+|.+
T Consensus       186 ~~i~~D~~gnl  196 (321)
T PF03178_consen  186 TIIVGDKDGNL  196 (321)
T ss_dssp             EEEEEETTSEE
T ss_pred             EEEEEcCCCeE
Confidence            77777777776

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.49  E-value=0.22  Score=37.14  Aligned_cols=96  Identities=15%  Similarity=0.165  Sum_probs=54.0

Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      -.+.+..+.-+++|++++++..-....-||.-...-......               ....+..+.|+|++...+.+ ..
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~---------------~~~riq~~gf~~~~~lw~~~-~G  206 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN---------------SSRRIQSMGFSPDGNLWMLA-RG  206 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----------------SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC---------------ccceehhceecCCCCEEEEe-CC
Confidence            345688888899999999988777777887553322222222               45789999999998765544 55


Q ss_pred             CeE-------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942          161 GKV-------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARV  193 (216)
Q Consensus       161 ~~i-------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~v  193 (216)
                      |.+                   ......+.+++|.++++..++++ .|.+.+
T Consensus       207 g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~  257 (302)
T PF14870_consen  207 GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV  257 (302)
T ss_dssp             TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE
T ss_pred             cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE
Confidence            555                   11223479999999888777665 555543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.48  E-value=0.024  Score=28.51  Aligned_cols=32  Identities=9%  Similarity=0.336  Sum_probs=26.5

Q ss_pred             CCeeEEEEcCCC---cEEEEecCCCeEEEEeCCCC
Q 043942           83 SGLTCGDFTTDG---KTICTGSDNATLSIWNPKGG  114 (216)
Q Consensus        83 ~~v~~~~~~~~~---~~l~t~~~d~~i~~wd~~~~  114 (216)
                      +.+.+++|+|..   .+|+.+-.-+.+.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999844   58888888899999999953

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.47  E-value=0.12  Score=42.35  Aligned_cols=113  Identities=15%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeee-ccCCCeeEEEEc--CCCcEEEEecCCC
Q 043942           28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFS-GHGSGLTCGDFT--TDGKTICTGSDNA  104 (216)
Q Consensus        28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~t~~~d~  104 (216)
                      .++.|+.-+.+.+.|-                ...++.|||.+.+.....-. ...+.|.+++|.  |+++.+++.+..+
T Consensus        33 ~li~gss~~k~a~V~~----------------~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDS----------------SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             ceEeecccCcEEEEEC----------------CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence            4666666666665543                45678899998776443322 346789999995  5888898888999


Q ss_pred             eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942          105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus       105 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      .|.++.-.........+  .- ...+..........+|.+..|.++|..++.++.
T Consensus        97 ~v~l~~Q~R~dy~~~~p--~w-~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN  148 (631)
T PF12234_consen   97 HVLLYTQLRYDYTNKGP--SW-APIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN  148 (631)
T ss_pred             EEEEEEccchhhhcCCc--cc-ceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence            99998643211000000  00 000111111113478999999999987776554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.04  Score=47.28  Aligned_cols=136  Identities=15%  Similarity=0.137  Sum_probs=79.0

Q ss_pred             EEeecccc-ceEEEEEccCCCEEEE--EcCCCcEEEEECCCCceEE-----EEeCCCCcc--------------------
Q 043942            8 SEILGHKD-SFSSLAFSTDGQLLAS--GGFHGLVQNRDTSSRNLQC-----TVEGPRGGI--------------------   59 (216)
Q Consensus         8 ~~~~~h~~-~v~~~~~s~~~~~l~s--~~~d~~v~vwd~~~~~~~~-----~~~~~~~~~--------------------   59 (216)
                      .+++-|.. ++..+...+|+...+.  .+.+..|..||+++-....     -+..+....                    
T Consensus        93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a  172 (1405)
T KOG3630|consen   93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA  172 (1405)
T ss_pred             cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence            44554443 5667777788765443  3445578899987542211     111111100                    


Q ss_pred             ---cCcEEEEEECCCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEE
Q 043942           60 ---EDSTVWMWNADRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMIC  135 (216)
Q Consensus        60 ---~~~~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  135 (216)
                         .|+.|++..+... .....+. -....++++|+|.|+.++.|-..|++.-|... .+....++..+..         
T Consensus       173 v~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~---------  241 (1405)
T KOG3630|consen  173 VDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE---------  241 (1405)
T ss_pred             hhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC---------
Confidence               4555555444321 1112222 34568999999999999999999999888765 4444445443322         


Q ss_pred             eeeecCeEEEEeCCCCcEEEE
Q 043942          136 TSLYDGVTCLSWPGTSKYLVT  156 (216)
Q Consensus       136 ~~~~~~v~~~~~~~~~~~l~~  156 (216)
                        ....|.+++|-....++++
T Consensus       242 --e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  242 --ENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             --CCcceeEEEEecceeEEEE
Confidence              3466888888766666554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.38  E-value=0.22  Score=37.51  Aligned_cols=62  Identities=13%  Similarity=0.311  Sum_probs=45.4

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEE-ecCCCeEEEEeCCCCceeEEeec
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICT-GSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t-~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      ....|-++|+.+++.+.++.. ...+.+|..+.+.+ +|.+ ...++.+.+||..+|+.+..+..
T Consensus       267 pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  267 PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             -EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            455688889999999988874 34588999998765 5544 45689999999999999888764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.33  Score=37.68  Aligned_cols=127  Identities=13%  Similarity=0.054  Sum_probs=86.5

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC---CCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD---NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT  136 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (216)
                      .++.|.+.|..+.+......- ......++++|+++.+..+..   ++.+.+.|..+++.......              
T Consensus        94 ~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v--------------  158 (381)
T COG3391          94 DSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV--------------  158 (381)
T ss_pred             CCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec--------------
Confidence            467888888776666655442 226778999999977766554   78999999998888777553              


Q ss_pred             eeecCeEEEEeCCCCcEEEEec-ccCeE----------Eee--------eCCEEEEEEecCCCeEEEEeCC---CcEEEE
Q 043942          137 SLYDGVTCLSWPGTSKYLVTGC-VDGKV----------DGH--------IDAIQSLSVSAIRESLVSVSVD---GTARVF  194 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~~-~~~~i----------~~~--------~~~i~~~~~~~~~~~l~s~~~d---~~v~vw  194 (216)
                       ...+ ..++++|+|+.++... .++.+          ..+        ......+.++|+|+++...-..   +.+...
T Consensus       159 -G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i  236 (381)
T COG3391         159 -GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI  236 (381)
T ss_pred             -CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence             2233 8899999999776665 44544          101        1234678889999866544332   588888


Q ss_pred             Eccccccee
Q 043942          195 EIAEFRRAT  203 (216)
Q Consensus       195 ~~~~~~~~~  203 (216)
                      |..++....
T Consensus       237 d~~~~~v~~  245 (381)
T COG3391         237 DTATGNVTA  245 (381)
T ss_pred             eCCCceEEE
Confidence            877755443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.38  E-value=0.01  Score=41.47  Aligned_cols=89  Identities=16%  Similarity=0.116  Sum_probs=58.5

Q ss_pred             CCEEEEEcCCCcEEEEECCCCc----------e--EEEEeCCCC------cccCcEEEEEECCCcceeeeeeccC-CCee
Q 043942           26 GQLLASGGFHGLVQNRDTSSRN----------L--QCTVEGPRG------GIEDSTVWMWNADRGAYLNMFSGHG-SGLT   86 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~----------~--~~~~~~~~~------~~~~~~v~i~d~~~~~~~~~~~~~~-~~v~   86 (216)
                      +..++.|+.+|.|.+|...-..          .  ...+.....      ...++.|+.|++..++.+.....|+ ..+.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            4568899999999999876211          0  011111111      1188999999988877777666676 4555


Q ss_pred             EEEEcCCCcEEEEe--cCCCeEEEEeCCCC
Q 043942           87 CGDFTTDGKTICTG--SDNATLSIWNPKGG  114 (216)
Q Consensus        87 ~~~~~~~~~~l~t~--~~d~~i~~wd~~~~  114 (216)
                      .......++.++.+  |.|..++.|++..-
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhhh
Confidence            55556666777777  77777888877643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.29  E-value=0.44  Score=38.30  Aligned_cols=97  Identities=11%  Similarity=0.041  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-------------------cc----cCcEEEEEECCCcceeeeeeccC
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-------------------GI----EDSTVWMWNADRGAYLNMFSGHG   82 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-------------------~~----~~~~v~i~d~~~~~~~~~~~~~~   82 (216)
                      +..++.++.++.+...|..+++.+-..+....                   .+    .++.|+-+|.++|+.+.+.....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            44677777889999999999887765543221                   11    56788888999998887665332


Q ss_pred             CC--eeEEEEcC--CCcEEEEec---------CCCeEEEEeCCCCceeEEeec
Q 043942           83 SG--LTCGDFTT--DGKTICTGS---------DNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        83 ~~--v~~~~~~~--~~~~l~t~~---------~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      ..  -..+.-+|  .+..++.++         .++.+..+|..+|+.+-.+..
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            21  00111112  123454443         368899999999998877654

The alignment model contains an 8-bladed beta-propeller.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.28  E-value=0.037  Score=27.82  Aligned_cols=31  Identities=35%  Similarity=0.432  Sum_probs=25.0

Q ss_pred             cceEEEEEccC-C--CEEEEEcCCCcEEEEECCC
Q 043942           15 DSFSSLAFSTD-G--QLLASGGFHGLVQNRDTSS   45 (216)
Q Consensus        15 ~~v~~~~~s~~-~--~~l~s~~~d~~v~vwd~~~   45 (216)
                      +.|.++.|+|. +  ++|+.+-..+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999984 4  5888888788888888874

It contains a characteristic DLL sequence motif.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.23  E-value=0.056  Score=42.01  Aligned_cols=48  Identities=21%  Similarity=0.117  Sum_probs=38.7

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG   54 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~   54 (216)
                      ...|......+.+++.+|++++.|+.+.-|.|.++|+.++..++.+++
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG  347 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG  347 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence            345556667799999999999999988889999999998876655544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.18  E-value=0.32  Score=35.61  Aligned_cols=84  Identities=10%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             CcEEEEEECCCcceeeeeeccCCC--eeEEEEcCCCcEEEEecC-----CCeEEEEeCCCCc-eeEEeecccccccccce
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSG--LTCGDFTTDGKTICTGSD-----NATLSIWNPKGGE-NFHAIRRSSLEFSLNYW  132 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~t~~~-----d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~  132 (216)
                      .-...++|.++.+...++...++.  .---.|+|||.+|...-.     .|.|-+||.+.+- .+-++..          
T Consensus        90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t----------  159 (366)
T COG3490          90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST----------  159 (366)
T ss_pred             CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc----------
Confidence            344567888776655554432221  122458999999876543     3779999998542 3445554          


Q ss_pred             EEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942          133 MICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus       133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                           +.-..-.+.|.+||+.++.+..
T Consensus       160 -----~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         160 -----HGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             -----CCcCcceeEEecCCcEEEEeCC
Confidence                 5555667788889988877643

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.06  E-value=0.042  Score=47.17  Aligned_cols=110  Identities=12%  Similarity=0.064  Sum_probs=73.1

Q ss_pred             cCcEEEEEECCCccee-----eeee------ccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCce-eEEeeccccc
Q 043942           60 EDSTVWMWNADRGAYL-----NMFS------GHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGEN-FHAIRRSSLE  126 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~-----~~~~------~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~  126 (216)
                      .+-.|..||+++-...     .-+.      .......++.|+|.-. ..+....|+.|++.-+..... ...++     
T Consensus       122 ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-----  196 (1405)
T KOG3630|consen  122 NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-----  196 (1405)
T ss_pred             CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-----
Confidence            4457888998753211     1111      1223456788888533 345666888888877664332 22223     


Q ss_pred             ccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEE
Q 043942          127 FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSV  185 (216)
Q Consensus       127 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~  185 (216)
                                 .....++++|+|.|..++.|-.+|.+                 ..-...|.+++|-....++++-
T Consensus       197 -----------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  197 -----------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             -----------cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence                       56778999999999999999999988                 1114689999998887777653

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.96  E-value=0.53  Score=36.21  Aligned_cols=110  Identities=13%  Similarity=0.095  Sum_probs=57.3

Q ss_pred             CCCCceeEEeeccc-cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------
Q 043942            1 INQGDWASEILGHK-DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------   59 (216)
Q Consensus         1 l~~g~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------   59 (216)
                      |++++ +.+|..+. .......++|+++.++-......++--|+.+.+....+..+..-.                    
T Consensus        67 L~t~~-i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~  145 (386)
T PF14583_consen   67 LATGE-ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEIS  145 (386)
T ss_dssp             TTT-E-EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEE
T ss_pred             cccCE-EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEe
Confidence            34554 34455433 223356778888877666556788888999887655554443311                    


Q ss_pred             --------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC-CcEEEEecC------CCeEEEEeCC
Q 043942           60 --------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD-GKTICTGSD------NATLSIWNPK  112 (216)
Q Consensus        60 --------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~------d~~i~~wd~~  112 (216)
                                          ....|.-.|+.+|+....+. ....+.-+.|+|. ...|+-|..      |..|.+.+.+
T Consensus       146 ~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d  224 (386)
T PF14583_consen  146 REDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD  224 (386)
T ss_dssp             GGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred             ehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence                                56667777888877655555 4566778899994 455555542      3345555544

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.95  E-value=0.024  Score=39.72  Aligned_cols=94  Identities=15%  Similarity=0.116  Sum_probs=51.8

Q ss_pred             CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------
Q 043942           93 DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------  163 (216)
Q Consensus        93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------  163 (216)
                      -+..++.|+.+|.|.+|..............             ......+.+.-..++.+..+++.+|.+         
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k  135 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK  135 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhc-------------ccccceeccccccccceeEEeccCCceeeeccccCc
Confidence            3567899999999999987722111111100             011111222223345577778888877         


Q ss_pred             -----Eeee-CCEEEEEEecCCCeEEEE--eCCCcEEEEEcccc
Q 043942          164 -----DGHI-DAIQSLSVSAIRESLVSV--SVDGTARVFEIAEF  199 (216)
Q Consensus       164 -----~~~~-~~i~~~~~~~~~~~l~s~--~~d~~v~vw~~~~~  199 (216)
                           ..|. .++..+..+..+++++.+  |.|..++.|++...
T Consensus       136 ~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  136 VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence                 2222 344455555555666666  66667777776543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.91  E-value=0.37  Score=35.07  Aligned_cols=96  Identities=19%  Similarity=0.162  Sum_probs=55.4

Q ss_pred             CeeEEEEcCCCcEEEEec---CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           84 GLTCGDFTTDGKTICTGS---DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      .+.+.+++++++.++...   ....++++...  .......                ....+....|++++...+....+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~----------------~g~~l~~PS~d~~g~~W~v~~~~   86 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL----------------TGGSLTRPSWDPDGWVWTVDDGS   86 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec----------------cCCccccccccCCCCEEEEEcCC
Confidence            688999999998776655   34445555543  2222221                11244555666665443332222


Q ss_pred             CeE------------------EeeeCCEEEEEEecCCCeEEEEe---CCCcEEEEEcc
Q 043942          161 GKV------------------DGHIDAIQSLSVSAIRESLVSVS---VDGTARVFEIA  197 (216)
Q Consensus       161 ~~i------------------~~~~~~i~~~~~~~~~~~l~s~~---~d~~v~vw~~~  197 (216)
                      ...                  ..-...|+.+.+||||..++...   .++.|.+=-+.
T Consensus        87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   87 GGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             CceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence            211                  11112899999999998776544   35777776654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.90  E-value=0.25  Score=36.23  Aligned_cols=120  Identities=10%  Similarity=0.175  Sum_probs=72.9

Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccc------cccccc-eEEEeeeecCeEEEEeCCCC
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL------EFSLNY-WMICTSLYDGVTCLSWPGTS  151 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~v~~~~~~~~~  151 (216)
                      .+-...+.++.|+|+.+.|.+......-.++=..+|+.+..++....      +..... +.+.......++-+...+++
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            34445599999999999998887777777776677888888775322      111111 11111223334445555554


Q ss_pred             cEEEEecccCeE--Eee-eCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          152 KYLVTGCVDGKV--DGH-IDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       152 ~~l~~~~~~~~i--~~~-~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ..+-.....-.+  ..+ ......++|+|..+.|..+-+-+=+.||.+..
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            443322211011  112 55678999999998888888777777777653

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=95.81  E-value=0.21  Score=35.94  Aligned_cols=132  Identities=11%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-C--CeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-N--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      -.+||+.+++....-...+--..+-.+-+||+++.+|+. +  ..+++++..+...............         ...
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~---------~~R  118 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ---------SGR  118 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc---------CCC
Confidence            457888876543221122233444567889999999874 2  3466666543110001100000000         111


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE-----E-e------------------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV-----D-G------------------HIDAIQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i-----~-~------------------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                      ---....-|||+.|+.|+.....     . .                  ....---+...|+|++++.+..+.  .|||.
T Consensus       119 WYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~  196 (243)
T PF07250_consen  119 WYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDY  196 (243)
T ss_pred             ccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeC
Confidence            12233345789988888876543     0 0                  001112345568999998887654  46787


Q ss_pred             ccccceeecC
Q 043942          197 AEFRRATKAP  206 (216)
Q Consensus       197 ~~~~~~~~~~  206 (216)
                      .+.+.+..+|
T Consensus       197 ~~n~v~~~lP  206 (243)
T PF07250_consen  197 KTNTVVRTLP  206 (243)
T ss_pred             CCCeEEeeCC
Confidence            7765544443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.77  E-value=0.25  Score=34.58  Aligned_cols=50  Identities=12%  Similarity=0.173  Sum_probs=34.7

Q ss_pred             cEEEEecCCCeEEEEeCCC--CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           95 KTICTGSDNATLSIWNPKG--GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        95 ~~l~t~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      +.|+.+...+.|.+|++..  .+....|.                .-+.|..+.++..|.++++--.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----------------Tv~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS----------------TVGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc----------------chhheeEEEeccccceEEEEEee
Confidence            4444446667899999983  34556665                44778888888888888876443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.69  E-value=0.71  Score=35.55  Aligned_cols=97  Identities=12%  Similarity=0.166  Sum_probs=43.9

Q ss_pred             CCCceeEEeeccccceE-----EEEEccCCCEEEEEc-CC--CcEEEEECCCCceEEEEeCCCCcc--------------
Q 043942            2 NQGDWASEILGHKDSFS-----SLAFSTDGQLLASGG-FH--GLVQNRDTSSRNLQCTVEGPRGGI--------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~-----~~~~s~~~~~l~s~~-~d--~~v~vwd~~~~~~~~~~~~~~~~~--------------   59 (216)
                      .||-.+..|..+...-.     .=+|.+||+.|+.++ .|  ..+.+.|+.+++..+.-.+.....              
T Consensus        18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y   97 (386)
T PF14583_consen   18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY   97 (386)
T ss_dssp             TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred             CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence            35666777764433222     235677887666554 34  456777888888776655432211              


Q ss_pred             --cCcEEEEEECCCcceeeeeeccCCCeeEEEEc--CCCcEEE
Q 043942           60 --EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT--TDGKTIC   98 (216)
Q Consensus        60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~   98 (216)
                        .+..|.-.|+++.+....+......+-...|.  .++..++
T Consensus        98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~  140 (386)
T PF14583_consen   98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLV  140 (386)
T ss_dssp             EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEE
T ss_pred             EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEE
Confidence              34456666677766555555555555445553  3555543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.68  E-value=0.32  Score=40.89  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD   93 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~   93 (216)
                      -.|..+.++|+|+++|..|..|. .|-.+... -....++...   ..-..+.+.+..  ... ...+...|..+.|+|.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~---~~i~Crt~~v~~--~~~-~~~~~~~i~qv~WhP~  157 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGK---KEINCRTVPVDE--RFF-TSNSSLEIKQVRWHPW  157 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCC---cceeEEEEEech--hhc-cCCCCceEEEEEEcCC
Confidence            36889999999999999987554 44333211 1001111000   001122222211  111 1234567899999995


Q ss_pred             ---CcEEEEecCCCeEEEEeCCCCc
Q 043942           94 ---GKTICTGSDNATLSIWNPKGGE  115 (216)
Q Consensus        94 ---~~~l~t~~~d~~i~~wd~~~~~  115 (216)
                         +..|+.-..|+++++||+....
T Consensus       158 s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  158 SESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCCCCeEEEEecCCEEEEEecCCCC
Confidence               5789999999999999998654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.66  E-value=0.18  Score=39.86  Aligned_cols=123  Identities=15%  Similarity=0.238  Sum_probs=76.4

Q ss_pred             CCCEEE-EEcCCCcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECC-Ccceeeeeecc
Q 043942           25 DGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNAD-RGAYLNMFSGH   81 (216)
Q Consensus        25 ~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~-~~~~~~~~~~~   81 (216)
                      +..+|. .++....++--|++.|+.+.++..+...+                     ++..|.-.|.+ .|..+...+. 
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es-  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES-  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee-
Confidence            444444 44555667777788888877776655432                     56666666665 2333332221 


Q ss_pred             CCCeeEEEEcC----CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942           82 GSGLTCGDFTT----DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG  157 (216)
Q Consensus        82 ~~~v~~~~~~~----~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  157 (216)
                      ...++.-.|+.    ...+++.|+..|-|++||--.-+....++.               ....|..+..+.+|.++++.
T Consensus       557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~---------------lG~aIk~idvta~Gk~ilaT  621 (776)
T COG5167         557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG---------------LGDAIKHIDVTANGKHILAT  621 (776)
T ss_pred             hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcc---------------cccceeeeEeecCCcEEEEe
Confidence            12222222322    345899999999999999664444444554               67888999999999988766


Q ss_pred             cccCeE
Q 043942          158 CVDGKV  163 (216)
Q Consensus       158 ~~~~~i  163 (216)
                      +..-.+
T Consensus       622 Ck~yll  627 (776)
T COG5167         622 CKNYLL  627 (776)
T ss_pred             ecceEE
Confidence            655433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.57  E-value=1.2  Score=37.32  Aligned_cols=111  Identities=12%  Similarity=0.107  Sum_probs=67.0

Q ss_pred             CeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCc-eeEEe----e--cccccccccceEEEeeeecCeEEEEeC--CCCc
Q 043942           84 GLTCGDFTT--DGKTICTGSDNATLSIWNPKGGE-NFHAI----R--RSSLEFSLNYWMICTSLYDGVTCLSWP--GTSK  152 (216)
Q Consensus        84 ~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~-~~~~~----~--~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~  152 (216)
                      .|+-|....  +...|+.|.+||.|.+|.+++-. .+...    .  .......+.   ...........++++  ...+
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~---f~~~v~~SaWGLdIh~~~~~r  178 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF---FHLRVGASAWGLDIHDYKKSR  178 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC---eEeecCCceeEEEEEecCcce
Confidence            344444433  45688899999999999774210 00000    0  000000000   011134467778887  7777


Q ss_pred             EEEEecccCeE-----------------EeeeCCEEEEEEecCC---C---eEEEEeCCCcEEEEEcc
Q 043942          153 YLVTGCVDGKV-----------------DGHIDAIQSLSVSAIR---E---SLVSVSVDGTARVFEIA  197 (216)
Q Consensus       153 ~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~---~---~l~s~~~d~~v~vw~~~  197 (216)
                      +||+++....|                 ..+...|.+++|-++.   .   .|++++-.|.+.+|++.
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            88877777666                 2355678899997643   2   77888889999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.51  E-value=0.74  Score=38.26  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=21.9

Q ss_pred             CCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          168 DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       168 ~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +.+..+..||+.++|+--..+|.+.+-+....+
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence            456677777777777777777777666554433

>PRK10115 protease 2; Provisional

Probab=95.46  E-value=0.71  Score=38.87  Aligned_cols=75  Identities=9%  Similarity=0.042  Sum_probs=45.8

Q ss_pred             ceEEEEEccCCCEEEEEcCC-CcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942           16 SFSSLAFSTDGQLLASGGFH-GLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG   94 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~   94 (216)
                      .+..+.++|||++|+.+... |.                      ....+++.|+.++..+...-...  -..++|.+|+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~----------------------E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~  183 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSR----------------------RQYGIRFRNLETGNWYPELLDNV--EPSFVWANDS  183 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCc----------------------EEEEEEEEECCCCCCCCccccCc--ceEEEEeeCC
Confidence            35667788888877765322 21                      44557777887775332211111  1468999988


Q ss_pred             cEEEEecCC------CeEEEEeCCCC
Q 043942           95 KTICTGSDN------ATLSIWNPKGG  114 (216)
Q Consensus        95 ~~l~t~~~d------~~i~~wd~~~~  114 (216)
                      +.|+....+      ..|+.+++.++
T Consensus       184 ~~~~y~~~~~~~~~~~~v~~h~lgt~  209 (686)
T PRK10115        184 WTFYYVRKHPVTLLPYQVWRHTIGTP  209 (686)
T ss_pred             CEEEEEEecCCCCCCCEEEEEECCCC
Confidence            866655332      36888888877

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=95.43  E-value=0.83  Score=35.98  Aligned_cols=31  Identities=23%  Similarity=0.459  Sum_probs=25.4

Q ss_pred             CCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          168 DAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       168 ~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ..|.+++..+..+.+++.+.++.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999999999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.39  E-value=0.26  Score=39.08  Aligned_cols=110  Identities=16%  Similarity=0.147  Sum_probs=75.8

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCC--E-----EEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQ--L-----LASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------   59 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~--~-----l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------   59 (216)
                      |++|+.+.+.+-|.+ |+-+.+.|+.+  .     -+.|-.|..|.-||++-..  .+...+.+.-.-            
T Consensus       363 IE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s  441 (644)
T KOG2395|consen  363 IERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES  441 (644)
T ss_pred             cccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC
Confidence            678999999998877 77888888653  2     2345567889999987432  222222222111            


Q ss_pred             -------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942           60 -------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK  112 (216)
Q Consensus        60 -------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~  112 (216)
                             .+|.|++||--..+....+.+-..+|..+..+.+|++|+..+ +..+.+.++.
T Consensus       442 G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  442 GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence                   789999999743344445777888999999999999887654 5577777664

>PHA02713 hypothetical protein; Provisional

Probab=95.38  E-value=0.94  Score=37.16  Aligned_cols=32  Identities=6%  Similarity=0.051  Sum_probs=21.7

Q ss_pred             CCCeEEEEeCCC--cEEEEEcccccceeecCCcc
Q 043942          178 IRESLVSVSVDG--TARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       178 ~~~~l~s~~~d~--~v~vw~~~~~~~~~~~~~~~  209 (216)
                      +++..++||.|+  .+-.||..+.+=....|.|+
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~  545 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS  545 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence            677788888887  67788887766444434333

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.36  E-value=0.6  Score=32.65  Aligned_cols=88  Identities=20%  Similarity=0.233  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCC--CcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCcceeeeeeccCCCe
Q 043942           25 DGQLLASGGFH--GLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRGAYLNMFSGHGSGL   85 (216)
Q Consensus        25 ~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~~v   85 (216)
                      +|.++.+.+.-  ..|++||+.+++.+..........                 .++.-..+|.++-+.+..+. -++.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            45667776643  469999999998887766553222                 67777777877766655544 23333


Q ss_pred             eEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 043942           86 TCGDFTTDGKTICTGSDNATLSIWNPKGGE  115 (216)
Q Consensus        86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~  115 (216)
                      ..++  .|+..|+.++...+++.-|.++..
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhh
Confidence            4444  356667776666677777766543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.24  E-value=1  Score=34.57  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=25.1

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL   48 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~   48 (216)
                      ...+....|||+|+.+|-.. ++.|.+++..+++.
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            45677888999998888776 57888888776643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.18  E-value=1.2  Score=34.96  Aligned_cols=35  Identities=11%  Similarity=0.017  Sum_probs=28.0

Q ss_pred             CEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          169 AIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       169 ~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      .+.+++.+|++++.++...=|.|.++|+.++..+.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr  343 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR  343 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh
Confidence            47889999999888776656999999998766443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.13  E-value=0.19  Score=35.70  Aligned_cols=29  Identities=21%  Similarity=0.422  Sum_probs=24.0

Q ss_pred             EcCCCcEEEEecCCCeEEEEeCCCCceeE
Q 043942           90 FTTDGKTICTGSDNATLSIWNPKGGENFH  118 (216)
Q Consensus        90 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~  118 (216)
                      +..++.++++-+.+|.+++||+.+++.+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~   46 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVL   46 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence            34568899999999999999999887643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.10  E-value=1.4  Score=35.48  Aligned_cols=93  Identities=9%  Similarity=0.069  Sum_probs=65.3

Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEEeCCCC-----------------------------cccCcEEEEEECCCcceeeee
Q 043942           28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRG-----------------------------GIEDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----------------------------~~~~~~v~i~d~~~~~~~~~~   78 (216)
                      .++.++.+|.+...|..+++.+-..+....                             ...++.+.-.|..+++.+-+.
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~  382 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEK  382 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEe
Confidence            577888999999999999988766542100                             002577888898888877665


Q ss_pred             eccC--------CCe--eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           79 SGHG--------SGL--TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        79 ~~~~--------~~v--~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      ....        ...  ..+..  .+..++.++.||.++.+|.++|+.+-.++.
T Consensus       383 ~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         383 REGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             eCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            4320        111  11222  467888889999999999999998877764

The alignment model contains an 8-bladed beta-propeller.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.08  E-value=0.9  Score=33.09  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=62.7

Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEEEECCCcceeeeeecc-----CCCeeEEE
Q 043942           28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWMWNADRGAYLNMFSGH-----GSGLTCGD   89 (216)
Q Consensus        28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i~d~~~~~~~~~~~~~-----~~~v~~~~   89 (216)
                      ...-.-.++...+||..+.+.+.++.-+..+-             ....++++|..+.+....+.-.     -..++.+.
T Consensus       102 l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE  181 (264)
T PF05096_consen  102 LYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE  181 (264)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred             EEEEEecCCeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence            33344567889999999999998887654432             5567888898877666555422     23466777


Q ss_pred             EcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc
Q 043942           90 FTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS  124 (216)
Q Consensus        90 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~  124 (216)
                      |- +|...|=.=....|...|..+|+....+....
T Consensus       182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~  215 (264)
T PF05096_consen  182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSG  215 (264)
T ss_dssp             EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred             EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhH
Confidence            76 67666666677789999999999888777543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.03  E-value=1.2  Score=34.36  Aligned_cols=19  Identities=21%  Similarity=0.420  Sum_probs=14.4

Q ss_pred             cceEEEEEccCCCEEEEEc
Q 043942           15 DSFSSLAFSTDGQLLASGG   33 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~   33 (216)
                      .....|+|.++|+++++-.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~   32 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEG   32 (367)
T ss_pred             CCCceeeECCCCCEEEEeC
Confidence            3456899999998777654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.97  E-value=0.57  Score=41.28  Aligned_cols=130  Identities=14%  Similarity=0.227  Sum_probs=80.1

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEE-cCC-------CcEEEEecCCCeEEEEeCCCCce---eEEeeccccccc
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDF-TTD-------GKTICTGSDNATLSIWNPKGGEN---FHAIRRSSLEFS  128 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~-------~~~l~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~  128 (216)
                      -|+.+.+|+.+++.....+.+-...|..+.. -|.       =++++.-+.--.|.++-+.-.+.   ...+..      
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~------  170 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT------  170 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc------
Confidence            7889999999987776666666555555543 222       22333333333444443321110   000100      


Q ss_pred             ccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------------------------E-eeeCCEEE
Q 043942          129 LNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------------------------D-GHIDAIQS  172 (216)
Q Consensus       129 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------------------------~-~~~~~i~~  172 (216)
                         ..........|+++....+|+.+++|-.++..                                   . .+..+|..
T Consensus       171 ---~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q  247 (1311)
T KOG1900|consen  171 ---SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ  247 (1311)
T ss_pred             ---ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence               01111145668888878888877766555332                                   2 45679999


Q ss_pred             EEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          173 LSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       173 ~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      +..+...+.+.+-+..++|.+|++..
T Consensus       248 i~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  248 ITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eEeccccceeeeeccCceEEEEEccC
Confidence            99988888999999999999999976

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.94  E-value=0.34  Score=33.00  Aligned_cols=31  Identities=23%  Similarity=0.470  Sum_probs=25.4

Q ss_pred             CCeeEEEEcCCC------cEEEEecCCCeEEEEeCCC
Q 043942           83 SGLTCGDFTTDG------KTICTGSDNATLSIWNPKG  113 (216)
Q Consensus        83 ~~v~~~~~~~~~------~~l~t~~~d~~i~~wd~~~  113 (216)
                      ..+..++|+|.|      -.|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999943      3688889999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.70  E-value=2  Score=35.09  Aligned_cols=96  Identities=13%  Similarity=0.042  Sum_probs=61.1

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCC--------------Cc-------c----cCcEEEEEECCCcceeeeeec
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPR--------------GG-------I----EDSTVWMWNADRGAYLNMFSG   80 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--------------~~-------~----~~~~v~i~d~~~~~~~~~~~~   80 (216)
                      +..++.++.++.|+-.|..+++.+-++....              ..       +    .++.+.-+|.++|+.+.....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            4567777778899999999998777654311              00       0    577788888888888765542


Q ss_pred             cCCC-eeEEEEcC---CCcEEEEec------CCCeEEEEeCCCCceeEEeec
Q 043942           81 HGSG-LTCGDFTT---DGKTICTGS------DNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        81 ~~~~-v~~~~~~~---~~~~l~t~~------~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .... -..+.-+|   ++. ++.+.      .++.|.-+|.++|+.+-.+..
T Consensus       149 ~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       149 GDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             ccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            1100 01111122   344 44443      368999999999998876654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.61  E-value=1.5  Score=33.37  Aligned_cols=31  Identities=16%  Similarity=0.286  Sum_probs=24.1

Q ss_pred             CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 043942           84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN  116 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~  116 (216)
                      ..+.|+|.||++.+++ ...|.|++++ ..+..
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~   33 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL   33 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence            3578999999877665 5699999999 44554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.07  E-value=3.4  Score=35.33  Aligned_cols=96  Identities=17%  Similarity=0.190  Sum_probs=61.7

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC------------------------------------cc----cCcEEE
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG------------------------------------GI----EDSTVW   65 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~------------------------------------~~----~~~~v~   65 (216)
                      +..+..++.++.|.-.|..+|+.+-+++....                                    .+    .|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            55777788889999999999987766543211                                    01    566677


Q ss_pred             EEECCCcceeeeeeccCCCe-------------eEEEEcC--CCcEEEEecC----------CCeEEEEeCCCCceeEEe
Q 043942           66 MWNADRGAYLNMFSGHGSGL-------------TCGDFTT--DGKTICTGSD----------NATLSIWNPKGGENFHAI  120 (216)
Q Consensus        66 i~d~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~t~~~----------d~~i~~wd~~~~~~~~~~  120 (216)
                      -.|.++|+....+.. .+.+             ..+.-.|  .+..+++|+.          +|.|+-+|.++|+.+-.+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            778888887765531 1111             0111122  2345555532          688999999999998777


Q ss_pred             ec
Q 043942          121 RR  122 (216)
Q Consensus       121 ~~  122 (216)
                      ..
T Consensus       353 ~~  354 (764)
T TIGR03074       353 DP  354 (764)
T ss_pred             ec
Confidence            64

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.94  E-value=0.52  Score=33.50  Aligned_cols=84  Identities=15%  Similarity=0.104  Sum_probs=50.9

Q ss_pred             EccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec
Q 043942           22 FSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS  101 (216)
Q Consensus        22 ~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~  101 (216)
                      +..++++|++...+|.+++||+.+++....-.           .+..+-....... ......|..+.++.+|.-+++-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-----------Si~pll~~~~~~~-~~~~~~i~~~~lt~~G~PiV~ls   85 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-----------SIAPLLNSSPVSD-KSSSPNITSCSLTSNGVPIVTLS   85 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-----------cHHHHhccccccc-CCCCCcEEEEEEcCCCCEEEEEe
Confidence            44568899999999999999998876533210           0000000000000 03456688888888887776654


Q ss_pred             CCCeEEEEeCCCCceeE
Q 043942          102 DNATLSIWNPKGGENFH  118 (216)
Q Consensus       102 ~d~~i~~wd~~~~~~~~  118 (216)
                       +|..+.|+..-+.-..
T Consensus        86 -ng~~y~y~~~L~~W~~  101 (219)
T PF07569_consen   86 -NGDSYSYSPDLGCWIR  101 (219)
T ss_pred             -CCCEEEeccccceeEE
Confidence             4678888877554444

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK13684 Ycf48-like protein; Provisional

Probab=93.91  E-value=2.2  Score=32.55  Aligned_cols=100  Identities=11%  Similarity=0.113  Sum_probs=55.6

Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG  161 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  161 (216)
                      ...++++.+.++++.++++ ..|.+.+=..+.+..-.........           ....+..+.+.+++..+++ +.+|
T Consensus       214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~-----------~~~~l~~v~~~~~~~~~~~-G~~G  280 (334)
T PRK13684        214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEIT-----------NGYGYLDLAYRTPGEIWAG-GGNG  280 (334)
T ss_pred             cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccc-----------cccceeeEEEcCCCCEEEE-cCCC
Confidence            4568899999998877765 4566543233444332211110000           1234677888887765544 4555


Q ss_pred             eE----------Ee------eeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          162 KV----------DG------HIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       162 ~i----------~~------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      .+          ..      -....+.+.|..+++.++ .+..|.|..|+
T Consensus       281 ~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        281 TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             eEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            54          11      112466777766666655 45678877665

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.55  E-value=0.02  Score=44.60  Aligned_cols=122  Identities=10%  Similarity=0.162  Sum_probs=77.2

Q ss_pred             eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeee-
Q 043942           17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFS-   79 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~-   79 (216)
                      .....|-|.+.-++.++.+..+..||-... .......+...+                ..+.+.+||+.+...- .+. 
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~  114 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLES  114 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcc-eecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhc
Confidence            335677787766888887878888875422 222221111111                7889999999854221 121 


Q ss_pred             ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                      +-+..-.-+.|++....++.+...+.+.+++..+.+.......               |...++++++.+.+..+.
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk---------------h~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK---------------HQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc---------------cccceeEEEecccceeee
Confidence            1111122378899888999998899999999887665444433               777888888888765443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.41  E-value=0.39  Score=37.61  Aligned_cols=165  Identities=16%  Similarity=0.107  Sum_probs=83.9

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCC
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGS   83 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~   83 (216)
                      ++.++.+..-...|..+-..|||+.|..-+. ..+.++++.+......             ++-|-..+...       .
T Consensus       210 ~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-------------kl~~dspg~~~-------~  268 (733)
T COG4590         210 QEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-------------KLVDDSPGDSR-------H  268 (733)
T ss_pred             hhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-------------hhhhcCCCchH-------H
Confidence            3444445555667888889999998776554 4666776654322100             00000001000       1


Q ss_pred             Cee-EEEEcCCCcEEEEecCCCeEEEE-eCCCCcee--EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942           84 GLT-CGDFTTDGKTICTGSDNATLSIW-NPKGGENF--HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus        84 ~v~-~~~~~~~~~~l~t~~~d~~i~~w-d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      .|+ .+..-.-|.-++.++.||.|.-| |.+.+...  .....-  +.          ...++..+.-..+.+-+++-+.
T Consensus       269 ~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f--~l----------~pa~~~~l~pe~~rkgF~~l~~  336 (733)
T COG4590         269 QVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNF--KL----------APAEVQFLLPETNRKGFYSLYR  336 (733)
T ss_pred             HHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeecc--cc----------CcccceeeccccccceEEEEcC
Confidence            111 11122345667778888888776 44433221  111110  00          1122222221222233444444


Q ss_pred             cCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          160 DGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       160 ~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      +|.+             ..-...+.-+++||++.++++- +.|.++++.+++..+.
T Consensus       337 ~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         337 NGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPE  391 (733)
T ss_pred             CCceeeeecccCcceehhhhhcCcceeeeCcccchheee-cCCceEEEEecCCCCC
Confidence            5544             2222356778999999998865 3688999998875543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.37  E-value=1.5  Score=35.94  Aligned_cols=40  Identities=18%  Similarity=0.079  Sum_probs=31.1

Q ss_pred             ceEEEEEcc----CCCEEEEEcCCCcEEEEECCCCceEEEEeCC
Q 043942           16 SFSSLAFST----DGQLLASGGFHGLVQNRDTSSRNLQCTVEGP   55 (216)
Q Consensus        16 ~v~~~~~s~----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~   55 (216)
                      .+..++.++    +..++++.+.|+.+|+||+.+++++.+....
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence            445566665    6689999999999999999999998877655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.35  E-value=4.9  Score=34.85  Aligned_cols=119  Identities=8%  Similarity=0.070  Sum_probs=73.0

Q ss_pred             cCcEEEEEECCCcceeeeeecc--CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           60 EDSTVWMWNADRGAYLNMFSGH--GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ..|.|.++....+..+.....+  .+.+.++.-- +|+++|.  -...|++|+..+.+.++.-..               
T Consensus       805 ~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~---------------  866 (1096)
T KOG1897|consen  805 VNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECN---------------  866 (1096)
T ss_pred             ccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhc---------------
Confidence            5677777777664333333222  2344443321 5666654  456899999988865554433               


Q ss_pred             eecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      +..++..+...-.|..+++|..-+.+                 ..+..+.+++.+-.+..++ -+..+|.+++-...
T Consensus       867 ~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  867 ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKD  942 (1096)
T ss_pred             ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccEEEEEec
Confidence            66777888887788888888776666                 3445667777765554444 34456777665443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.25  E-value=2.9  Score=31.86  Aligned_cols=26  Identities=35%  Similarity=0.416  Sum_probs=21.1

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEE
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRD   42 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd   42 (216)
                      ..+.|+|.|||++|++- ..|.|++++
T Consensus         3 ~P~~~a~~pdG~l~v~e-~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAE-RSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCEEEEE-TTTEEEEEE
T ss_pred             CceEEEEeCCCcEEEEe-CCceEEEEe
Confidence            45789999999877764 488888888

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.19  E-value=0.5  Score=22.96  Aligned_cols=25  Identities=20%  Similarity=0.170  Sum_probs=16.8

Q ss_pred             eeccccceEEEEEccCCCEEEEEcC
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGF   34 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~   34 (216)
                      +......-....|||||++|+-++.
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~   28 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSN   28 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEec
Confidence            3344556778999999998886653

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.90  E-value=1.9  Score=29.31  Aligned_cols=31  Identities=13%  Similarity=0.127  Sum_probs=24.9

Q ss_pred             CCEEEEEEecCC------CeEEEEeCCCcEEEEEccc
Q 043942          168 DAIQSLSVSAIR------ESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       168 ~~i~~~~~~~~~------~~l~s~~~d~~v~vw~~~~  198 (216)
                      ..+..++|||.|      -+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999954      3678888899999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.66  E-value=2.9  Score=35.31  Aligned_cols=34  Identities=12%  Similarity=0.079  Sum_probs=28.8

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN   47 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~   47 (216)
                      ...+.++.-+|.|+-++.+..||.+++|+.....
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~   47 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR   47 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence            4567788889999999999999999999976543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.59  E-value=0.66  Score=22.79  Aligned_cols=31  Identities=16%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             CCCcEEEEec-CCCeEEEEeCCCCceeEEeec
Q 043942           92 TDGKTICTGS-DNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        92 ~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      |+++.|.++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677666544 688999999988887777664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.50  E-value=5.3  Score=33.01  Aligned_cols=92  Identities=12%  Similarity=0.169  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCC------CcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECCCcceeee
Q 043942           25 DGQLLASGGFH------GLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNADRGAYLNM   77 (216)
Q Consensus        25 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~~~~   77 (216)
                      ++...++|+.|      ..+..||....+............                     .-.++-.||..+.+-...
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence            35688888888      346778877766333111111100                     333466677665432111


Q ss_pred             eeccCCCeeEEEE-cCCCcEEEEecCC------CeEEEEeCCCCcee
Q 043942           78 FSGHGSGLTCGDF-TTDGKTICTGSDN------ATLSIWNPKGGENF  117 (216)
Q Consensus        78 ~~~~~~~v~~~~~-~~~~~~l~t~~~d------~~i~~wd~~~~~~~  117 (216)
                      -. .......... .-+|...++|+.+      .++..||..+++..
T Consensus       412 a~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  412 AP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             CC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            11 1111122221 1257788888755      34677888776543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.50  E-value=4.3  Score=31.98  Aligned_cols=52  Identities=12%  Similarity=0.057  Sum_probs=30.9

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK  112 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~  112 (216)
                      .||.+.+|+-+.-.....+.+ ---...+.|.+....+++++.+..+..|...
T Consensus       153 ~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  153 MDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             cCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence            455555555443322222222 2223456777878888898888888888654

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.48  E-value=2.8  Score=35.97  Aligned_cols=89  Identities=12%  Similarity=0.118  Sum_probs=54.8

Q ss_pred             cceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceE--EEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942           15 DSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQ--CTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT   91 (216)
Q Consensus        15 ~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~   91 (216)
                      .+..+++|+| +.+.||..+..|+-.||++..+...  ..+.....  ..|.| ++|.+         .+ ..-..+.|.
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~--~~gsi-~~d~~---------e~-s~w~rI~W~  212 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN--ISGSI-IFDPE---------EL-SNWKRILWV  212 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccC--CCccc-cCCCc---------cc-CcceeeEec
Confidence            3567899999 4578999999999999999222111  11110000  11222 12211         11 445688898


Q ss_pred             CCCcEEEEecCCCeEEEEeCCCCcee
Q 043942           92 TDGKTICTGSDNATLSIWNPKGGENF  117 (216)
Q Consensus        92 ~~~~~l~t~~~d~~i~~wd~~~~~~~  117 (216)
                      ++.+.|+.++.. .+.++|+++....
T Consensus       213 ~~~~~lLv~~r~-~l~~~d~~~~~~~  237 (765)
T PF10214_consen  213 SDSNRLLVCNRS-KLMLIDFESNWQT  237 (765)
T ss_pred             CCCCEEEEEcCC-ceEEEECCCCCcc
Confidence            888888887654 6889999977653

These proteins are found in fungi.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.35  E-value=3.9  Score=31.08  Aligned_cols=74  Identities=9%  Similarity=0.009  Sum_probs=45.9

Q ss_pred             CeeEEEEcCCCcEEEEecCC------CeEEEEeCCCCceeEEeeccc-ccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942           84 GLTCGDFTTDGKTICTGSDN------ATLSIWNPKGGENFHAIRRSS-LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT  156 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  156 (216)
                      ..-+|++.+++.++++.-.+      ..|.-++.. |+....+..+. ........ .....+.....++++|+|+.|++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~-~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGT-SGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCcc-ccccCCCCeEEEEECCCCCEEEE
Confidence            44578887788888887777      889999977 77766653321 11000000 00115567889999999996665


Q ss_pred             ecc
Q 043942          157 GCV  159 (216)
Q Consensus       157 ~~~  159 (216)
                      +.+
T Consensus       164 ~~E  166 (326)
T PF13449_consen  164 AME  166 (326)
T ss_pred             EEC
Confidence            433

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.18  E-value=0.1  Score=44.00  Aligned_cols=55  Identities=15%  Similarity=0.268  Sum_probs=31.1

Q ss_pred             cCcEEEEEECC--Cccee-----eeeeccCCCeeEEEEcC---CCcEEEEecCCCeEEEEeCCCC
Q 043942           60 EDSTVWMWNAD--RGAYL-----NMFSGHGSGLTCGDFTT---DGKTICTGSDNATLSIWNPKGG  114 (216)
Q Consensus        60 ~~~~v~i~d~~--~~~~~-----~~~~~~~~~v~~~~~~~---~~~~l~t~~~d~~i~~wd~~~~  114 (216)
                      .-|.+.|||+.  .|+..     .....-...+.-+.|.|   +.-++..+-.++.+++......
T Consensus       151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra  215 (1283)
T KOG1916|consen  151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA  215 (1283)
T ss_pred             HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH
Confidence            45667777765  23221     11222233455666665   5556666777888888766543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.10  E-value=5.8  Score=32.49  Aligned_cols=109  Identities=9%  Similarity=0.029  Sum_probs=61.7

Q ss_pred             ccceEEEEEccCC----CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc---CC--C
Q 043942           14 KDSFSSLAFSTDG----QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH---GS--G   84 (216)
Q Consensus        14 ~~~v~~~~~s~~~----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~---~~--~   84 (216)
                      -+.|..+.|.|-+    .-|.+......|.||.+.....                     ++++.+..-..+   .-  -
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~---------------------e~~K~l~sQtcEi~e~~pvL  114 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT---------------------ERNKLLMSQTCEIREPFPVL  114 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc---------------------ccccceeeeeeeccCCcccC
Confidence            3568899999843    2455555566777887642110                     011111111100   11  1


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      .....|+|....|++-.....--+++++....  ...+.                ..+.|-|.+|.+||+.|+++-.
T Consensus       115 pQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~----------------~~G~IhCACWT~DG~RLVVAvG  175 (671)
T PF15390_consen  115 PQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK----------------TSGLIHCACWTKDGQRLVVAVG  175 (671)
T ss_pred             CCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc----------------CCceEEEEEecCcCCEEEEEeC
Confidence            24567999888877665554444555553322  22232                5678999999999998876543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.74  E-value=0.7  Score=22.70  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=22.1

Q ss_pred             cCCCeEEEEe-CCCcEEEEEcccccceeecCC
Q 043942          177 AIRESLVSVS-VDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       177 ~~~~~l~s~~-~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      |++++|+++. .++.|.++|..+.+....++.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677666544 578999999988777665544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.68  E-value=6.1  Score=31.93  Aligned_cols=98  Identities=11%  Similarity=0.063  Sum_probs=58.8

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCc----EEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDS----TVWMWNADRGAYLNMFSGHGSGLTCGDF   90 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~----~v~i~d~~~~~~~~~~~~~~~~v~~~~~   90 (216)
                      -.|..+..++.|..++-++.+|.+.++=.+..-       ......||    +.+..-+.  ..+.+-. ..-.+...+|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG-------~~s~~eDgk~~v~CRt~~i~--~~~ftss-~~ltl~Qa~W  173 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWG-------KNSEFEDGKSTVNCRTTPVA--ERFFTSS-TSLTLKQAAW  173 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcC-------ccceecCCCceEEEEeeccc--ceeeccC-Cceeeeeccc
Confidence            357788889999999998888876654322111       11111233    11222222  2222211 2234678899


Q ss_pred             cCCC---cEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           91 TTDG---KTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        91 ~~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +|+.   ..|..-+.|..+++||+.....+....+
T Consensus       174 HP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg  208 (741)
T KOG4460|consen  174 HPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG  208 (741)
T ss_pred             cCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence            9965   6777778899999999987766654443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.65  E-value=6.5  Score=34.86  Aligned_cols=31  Identities=29%  Similarity=0.301  Sum_probs=26.0

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCC
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSR   46 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~   46 (216)
                      ....++|+|...++|.+...|.|+++-...-
T Consensus        37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             CCcceeeccccceEEEEEecccEEEecccce
Confidence            4557899999999999999999999976543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.60  E-value=4.5  Score=30.17  Aligned_cols=137  Identities=8%  Similarity=0.084  Sum_probs=80.0

Q ss_pred             CcEEEEEECCCcceeeeeec------cCCCeeEEEEcCCC-----cEE-EEecCCCeEEEEeCCCCceeEEeeccccccc
Q 043942           61 DSTVWMWNADRGAYLNMFSG------HGSGLTCGDFTTDG-----KTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFS  128 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  128 (216)
                      .-.+.+||+.+++.++++.-      ..+.+..+.+....     .++ ++=+..+.|-|+|+.+++.-..... .....
T Consensus        33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~  111 (287)
T PF03022_consen   33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPD  111 (287)
T ss_dssp             --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS
T ss_pred             CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC-Cccee
Confidence            34566777777766655442      23456777776522     233 3333456899999999887665554 32222


Q ss_pred             ccce-EE----EeeeecCeEEEEeCC---CCcEEEEecccCe-E-------------------------Eeee-CCEEEE
Q 043942          129 LNYW-MI----CTSLYDGVTCLSWPG---TSKYLVTGCVDGK-V-------------------------DGHI-DAIQSL  173 (216)
Q Consensus       129 ~~~~-~~----~~~~~~~v~~~~~~~---~~~~l~~~~~~~~-i-------------------------~~~~-~~i~~~  173 (216)
                      +... ..    .....+.+..++.+|   ++++|+-....+. +                         .+.. .....+
T Consensus       112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~  191 (287)
T PF03022_consen  112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM  191 (287)
T ss_dssp             -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred             ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence            2111 11    111344577777765   6677765443332 2                         1222 366788


Q ss_pred             EEecCCCeEEEEeCCCcEEEEEccc
Q 043942          174 SVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       174 ~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      +++++|.++++--..+.|..|+...
T Consensus       192 ~~D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  192 AIDPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             EEETTTEEEEEECCCTEEEEEETTT
T ss_pred             EECCCCcEEEecCCCCeEEEEeCCC
Confidence            8999999999888899999999876

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=91.41  E-value=0.29  Score=39.88  Aligned_cols=50  Identities=18%  Similarity=0.222  Sum_probs=38.3

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC-eEEEEeC
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA-TLSIWNP  111 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~-~i~~wd~  111 (216)
                      ..+.+-|......+..++.|..++..++|.+.+..+++++-.| .|.++.+
T Consensus       295 ~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi  345 (788)
T KOG2109|consen  295 NLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI  345 (788)
T ss_pred             ceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe
Confidence            3366667777777788999999999999999999999887544 3555444

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.30  E-value=6  Score=31.07  Aligned_cols=54  Identities=11%  Similarity=0.153  Sum_probs=32.7

Q ss_pred             CcEEEEEECCCccee--eeeeccCCC--eeEEEEcCCCcEEEEec---CC-CeEEEEeCCCC
Q 043942           61 DSTVWMWNADRGAYL--NMFSGHGSG--LTCGDFTTDGKTICTGS---DN-ATLSIWNPKGG  114 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~t~~---~d-~~i~~wd~~~~  114 (216)
                      ...|+.|.+.+....  ..+......  ...+..++++++++..+   .+ ..+.+.|+..+
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            556777777765332  334443333  56788899999877533   33 56888888875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.93  E-value=4.4  Score=30.09  Aligned_cols=54  Identities=11%  Similarity=0.278  Sum_probs=37.1

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec------CCCeEEEEeCCCCc
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS------DNATLSIWNPKGGE  115 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~------~d~~i~~wd~~~~~  115 (216)
                      ..|++||..+.+-..--.+-.+.|+.+.|..+.+.++.|.      ....+..||+.+..
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            4577777766554443344567899999987777777664      35568889888664

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.81  E-value=0.83  Score=37.33  Aligned_cols=40  Identities=25%  Similarity=0.301  Sum_probs=29.8

Q ss_pred             CCeeEEEEcC----CCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           83 SGLTCGDFTT----DGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        83 ~~v~~~~~~~----~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .....+++++    +..++++.+.|+++++||+.+++.+.....
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence            3455566666    678999999999999999999999776643

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=90.74  E-value=11  Score=32.99  Aligned_cols=96  Identities=15%  Similarity=0.136  Sum_probs=68.0

Q ss_pred             eEEEEEccC-CCEEEEEc----------CCCcEEEEECCCCceEEEEe---CCCCcc------------cCcEEEEEECC
Q 043942           17 FSSLAFSTD-GQLLASGG----------FHGLVQNRDTSSRNLQCTVE---GPRGGI------------EDSTVWMWNAD   70 (216)
Q Consensus        17 v~~~~~s~~-~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~---~~~~~~------------~~~~v~i~d~~   70 (216)
                      |.++.|..| +.+++.|.          ..|.|.++.+..++.++.+.   ......            -+..|++|+..
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t  856 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWT  856 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEcc
Confidence            445557776 67777775          34778888877743333221   111111            67889999999


Q ss_pred             CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK  112 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~  112 (216)
                      +.+.++.-..+..++..+...-.+..++.|.--+.+.+.-.+
T Consensus       857 ~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  857 TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence            887777777788889999999999999999887877775544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=90.68  E-value=5.7  Score=32.85  Aligned_cols=125  Identities=10%  Similarity=0.074  Sum_probs=62.5

Q ss_pred             CcEEEEEECCCccee--eeeeccCCCeeEEEEcCCCcEEEEecCC------CeEEEEeCCCCceeEEeecccccccccce
Q 043942           61 DSTVWMWNADRGAYL--NMFSGHGSGLTCGDFTTDGKTICTGSDN------ATLSIWNPKGGENFHAIRRSSLEFSLNYW  132 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  132 (216)
                      -..+..||..++...  ..+. ....-.+++.. ++...++|+.|      ..+..||.+..+-...-+...        
T Consensus       300 ~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--------  369 (571)
T KOG4441|consen  300 LRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--------  369 (571)
T ss_pred             cceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--------
Confidence            345566666655322  2222 12223344443 46788888888      357788888776433111100        


Q ss_pred             EEEeeeecCeEEEEeCCCCcEEEEecccCeE------------------EeeeCCEEEEEE-ecCCCeEEEEeCCC----
Q 043942          133 MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------------------DGHIDAIQSLSV-SAIRESLVSVSVDG----  189 (216)
Q Consensus       133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------------~~~~~~i~~~~~-~~~~~~l~s~~~d~----  189 (216)
                           ........  .-+|...++|+.||.-                  ............ .-+|...++||.++    
T Consensus       370 -----~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~  442 (571)
T KOG4441|consen  370 -----KRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNC  442 (571)
T ss_pred             -----ccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccc
Confidence                 11111111  1256778888888754                  001111112211 23677777787553    


Q ss_pred             --cEEEEEcccccce
Q 043942          190 --TARVFEIAEFRRA  202 (216)
Q Consensus       190 --~v~vw~~~~~~~~  202 (216)
                        ++..||..+.+-.
T Consensus       443 l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  443 LNSVECYDPETNTWT  457 (571)
T ss_pred             cceEEEEcCCCCcee
Confidence              5677887765543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.50  E-value=0.44  Score=40.46  Aligned_cols=22  Identities=27%  Similarity=0.220  Sum_probs=15.9

Q ss_pred             EccCCCEEEEEcCCCcEEEEEC
Q 043942           22 FSTDGQLLASGGFHGLVQNRDT   43 (216)
Q Consensus        22 ~s~~~~~l~s~~~d~~v~vwd~   43 (216)
                      .||||+.||++..||.++.|.+
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeee
Confidence            5677777777777777777664

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.22  E-value=8.2  Score=30.86  Aligned_cols=35  Identities=17%  Similarity=0.061  Sum_probs=26.3

Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE  115 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~  115 (216)
                      .-...+.|+|.||++.|++--..|.|++++..++.
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~   62 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGE   62 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc
Confidence            34557899999999877765446999999866543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.06  E-value=1.3  Score=21.42  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=19.0

Q ss_pred             ccCCCeeEEEEcCCCcEEEEec-CC--CeEEEE
Q 043942           80 GHGSGLTCGDFTTDGKTICTGS-DN--ATLSIW  109 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t~~-~d--~~i~~w  109 (216)
                      .....-....|+|||+.|+-++ .+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455677899999999887665 33  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.91  E-value=12  Score=32.24  Aligned_cols=61  Identities=15%  Similarity=0.247  Sum_probs=39.9

Q ss_pred             CcEEEEEECCCcceeeeeeccCCC---------eeEEEEcC-CCc---EEEEecCCCeEEEEeCCCCceeEEee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSG---------LTCGDFTT-DGK---TICTGSDNATLSIWNPKGGENFHAIR  121 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~---------v~~~~~~~-~~~---~l~t~~~d~~i~~wd~~~~~~~~~~~  121 (216)
                      .+.|.-.|.+||+..-.++.....         ..-+.+.. +|+   .++.++.+|.+.++|-++|+.+...+
T Consensus       413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            455666777788777666542111         11222322 453   78899999999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA03098 kelch-like protein; Provisional

Probab=89.88  E-value=9.7  Score=31.14  Aligned_cols=23  Identities=9%  Similarity=-0.033  Sum_probs=15.6

Q ss_pred             CCCeEEEEeCC-----CcEEEEEccccc
Q 043942          178 IRESLVSVSVD-----GTARVFEIAEFR  200 (216)
Q Consensus       178 ~~~~l~s~~~d-----~~v~vw~~~~~~  200 (216)
                      +++.++.||.+     +.+.+||..+.+
T Consensus       487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        487 NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            66667777654     467888877643

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.32  E-value=9.6  Score=30.34  Aligned_cols=94  Identities=9%  Similarity=0.081  Sum_probs=57.8

Q ss_pred             ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942           80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      ...++|.++.|++|.+.+|+--.+..|.+++....+..........           .....|...+|+.. .-++....
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck-----------~k~~~IlGF~W~~s-~e~A~i~~  131 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK-----------TKNANILGFCWTSS-TEIAFITD  131 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc-----------cCcceeEEEEEecC-eeEEEEec
Confidence            3567899999999999999999999999999853332222111000           02334666666544 22332222


Q ss_pred             cCe-----------E---EeeeCCEEEEEEecCCCeEEEE
Q 043942          160 DGK-----------V---DGHIDAIQSLSVSAIRESLVSV  185 (216)
Q Consensus       160 ~~~-----------i---~~~~~~i~~~~~~~~~~~l~s~  185 (216)
                      .|.           +   ..|.-.|.=..|+++.+.+.-+
T Consensus       132 ~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  132 QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            221           1   5667777778888887755433

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=89.11  E-value=9.3  Score=33.12  Aligned_cols=28  Identities=14%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             CCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942           83 SGLTCGDFTTDGKTICTGSDNATLSIWNPK  112 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~  112 (216)
                      -.|.|+.-+.+|+.+.+|-.|  +.+|.+.
T Consensus       182 inV~civs~e~GrIFf~g~~d--~nvyEl~  209 (1263)
T COG5308         182 INVRCIVSEEDGRIFFGGEND--PNVYELV  209 (1263)
T ss_pred             ceeEEEEeccCCcEEEecCCC--CCeEEEE
Confidence            457888877789988888777  7777664

>PHA02713 hypothetical protein; Provisional

Probab=89.02  E-value=10  Score=31.35  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=15.6

Q ss_pred             CCCEEEEEcCCC-----cEEEEECCCCc
Q 043942           25 DGQLLASGGFHG-----LVQNRDTSSRN   47 (216)
Q Consensus        25 ~~~~l~s~~~d~-----~v~vwd~~~~~   47 (216)
                      +|+..+.||.++     .+..||..+.+
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            456677777653     37788887654

>PRK13684 Ycf48-like protein; Provisional

Probab=88.07  E-value=10  Score=29.01  Aligned_cols=93  Identities=14%  Similarity=0.177  Sum_probs=50.5

Q ss_pred             CCeeEEEEcCCCcEEEEecCCCeEEE-EeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942           83 SGLTCGDFTTDGKTICTGSDNATLSI-WNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG  161 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  161 (216)
                      ..+..+.+.|++.+++++. .|.+.. +|-. ++.-.....              .....++.+.+.++++.++++. .|
T Consensus       173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~--------------~~~~~l~~i~~~~~g~~~~vg~-~G  235 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQR--------------NSSRRLQSMGFQPDGNLWMLAR-GG  235 (334)
T ss_pred             ceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeC--------------CCcccceeeeEcCCCCEEEEec-CC
Confidence            4577888888877666654 344332 2211 221111111              0345677888888777655432 23


Q ss_pred             eE-----------Ee-------eeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942          162 KV-----------DG-------HIDAIQSLSVSAIRESLVSVSVDGTARV  193 (216)
Q Consensus       162 ~i-----------~~-------~~~~i~~~~~~~~~~~l~s~~~d~~v~v  193 (216)
                      .+           ..       ....+.++.+.|+++.++ ++.+|.+..
T Consensus       236 ~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~  284 (334)
T PRK13684        236 QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV  284 (334)
T ss_pred             EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE
Confidence            33           10       113467888988877555 445776543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.81  E-value=12  Score=29.49  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=56.4

Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-----eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-----FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT  156 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  156 (216)
                      ...++.+.+.+++..++++ .+|.+.. ....++.     .......             .....+..+.|.+++..+++
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~-------------~~~~~l~~v~~~~d~~~~a~  344 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIK-------------SRGFGILDVGYRSKKEAWAA  344 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccC-------------CCCcceEEEEEcCCCcEEEE
Confidence            4568899999998888766 4555443 3333431     1222110             02235788888887776555


Q ss_pred             ecccCeE-----------E-----eeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          157 GCVDGKV-----------D-----GHIDAIQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       157 ~~~~~~i-----------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                      | ..|.+           .     .-....+.+.|.++++.++++ .+|.|.-|
T Consensus       345 G-~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        345 G-GSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             E-CCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            4 45544           1     113467889987777766655 57776544

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=87.56  E-value=1.7  Score=19.46  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=17.0

Q ss_pred             EEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          170 IQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       170 i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                      ..+++++++|+.+++-+....|+++
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4667777777777776666666553

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>smart00564 PQQ beta-propeller repeat

Probab=87.47  E-value=1.8  Score=19.84  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEEecCCCeEEEEeCCCCceeEE
Q 043942           96 TICTGSDNATLSIWNPKGGENFHA  119 (216)
Q Consensus        96 ~l~t~~~d~~i~~wd~~~~~~~~~  119 (216)
                      .++.++.++.+..+|.++|+.+-.
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            577788899999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.86  E-value=5.9  Score=31.43  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT   92 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~   92 (216)
                      .+++|.++.||+|.+.||.--.|.+|.+.+....+..                      -....+.+..+..|....|..
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~----------------------l~~~~~ck~k~~~IlGF~W~~  122 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ----------------------LEYTQECKTKNANILGFCWTS  122 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchh----------------------hHHHHHhccCcceeEEEEEec
Confidence            4568889999999888888777776666655321110                      011122333344577888876


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942           93 DGKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG  157 (216)
Q Consensus        93 ~~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  157 (216)
                      + .-+|.-...| +-+|.....+ .+...+.               +...|+-..|.++.+.+..+
T Consensus       123 s-~e~A~i~~~G-~e~y~v~pekrslRlVks---------------~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  123 S-TEIAFITDQG-IEFYQVLPEKRSLRLVKS---------------HNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             C-eeEEEEecCC-eEEEEEchhhhhhhhhhh---------------cccCccEEEEccccceEeee
Confidence            5 3444443333 5555544322 2222332               55566666666666654433

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.62  E-value=16  Score=32.94  Aligned_cols=128  Identities=16%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             cCCCcEEEEECCCCceEEEEeCCCCcc------------------------cCcEEEEEECC----Ccce-----eeeee
Q 043942           33 GFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------EDSTVWMWNAD----RGAY-----LNMFS   79 (216)
Q Consensus        33 ~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------~~~~v~i~d~~----~~~~-----~~~~~   79 (216)
                      +.|..+.+|+.+++.....+.+-...+                        ..-.|.++-+.    ++..     ..++.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            357889999999976666555433322                        22233333221    1100     01122


Q ss_pred             ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC----CC---ceeEEeec--cccc-ccccceEEEeeeecCeEEEEeCC
Q 043942           80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK----GG---ENFHAIRR--SSLE-FSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~----~~---~~~~~~~~--~~~~-~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ...-.|.|+....+|+.+++|- ||  .+|.+.    ++   +.-..+..  .... ..+........+.++|..+..+.
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            2345688888777888777764 44  455442    11   11111111  0000 11111111124678999999998


Q ss_pred             CCcEEEEecccCeE
Q 043942          150 TSKYLVTGCVDGKV  163 (216)
Q Consensus       150 ~~~~l~~~~~~~~i  163 (216)
                      ..+.+.+-++.|.+
T Consensus       253 SR~IlY~lsek~~v  266 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTV  266 (1311)
T ss_pred             ccceeeeeccCceE
Confidence            88888888877776

>PHA02790 Kelch-like protein; Provisional

Probab=86.51  E-value=16  Score=29.59  Aligned_cols=24  Identities=13%  Similarity=0.134  Sum_probs=15.7

Q ss_pred             CCcEEEEecCCC---eEEEEeCCCCce
Q 043942           93 DGKTICTGSDNA---TLSIWNPKGGEN  116 (216)
Q Consensus        93 ~~~~l~t~~~d~---~i~~wd~~~~~~  116 (216)
                      +++..+.|+.++   .+..||.++.+-
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            577777777543   466788776543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.42  E-value=6.8  Score=32.06  Aligned_cols=60  Identities=13%  Similarity=0.215  Sum_probs=41.1

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +.+.-+|+.+++..-..+.......+. ..-.+..++.++.||.++.+|.++|+.+-.+..
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            457788888887776554222111121 112455777888899999999999999988765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR02608 delta_60_rpt delta-60 repeat domain

Probab=85.72  E-value=3.9  Score=21.91  Aligned_cols=48  Identities=17%  Similarity=0.156  Sum_probs=25.8

Q ss_pred             eEEEEeCCCCcEEEEecccCeEEeeeCCEEEEEEecCCCeEEEEeCCCcE
Q 043942          142 VTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTA  191 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~~~~~~~l~s~~~d~~v  191 (216)
                      ..+++..|||+++++|.....  .......-+.+.+||.+=-+-+.+|.+
T Consensus         3 ~~~~~~q~DGkIlv~G~~~~~--~~~~~~~l~Rln~DGsLDttFg~~G~v   50 (55)
T TIGR02608         3 AYAVAVQSDGKILVAGYVDNS--SGNNDFVLARLNADGSLDTTFGTGGKV   50 (55)
T ss_pred             eEEEEECCCCcEEEEEEeecC--CCcccEEEEEECCCCCccCCcCCCcEE
Confidence            456777778887777754321  122233445566666544444445544

This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.88  E-value=16  Score=28.29  Aligned_cols=19  Identities=16%  Similarity=0.129  Sum_probs=14.1

Q ss_pred             CCeeEEEEcCCCcEEEEec
Q 043942           83 SGLTCGDFTTDGKTICTGS  101 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~  101 (216)
                      .....++|.|||.+.++-+
T Consensus       124 ~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             ccccCceECCCCCEEEecc
Confidence            4477899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=84.36  E-value=6.5  Score=23.32  Aligned_cols=50  Identities=12%  Similarity=0.018  Sum_probs=33.7

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCC
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPK  112 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~  112 (216)
                      .-+.|..||..+-+.  ... --...+.|.++|++++|..++ ..+.|+++..+
T Consensus        34 ~~~~Vvyyd~~~~~~--va~-g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   34 PWGNVVYYDGKEVKV--VAS-GFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCceEEEEeCCEeEE--eec-cCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            456777888654222  222 224467899999999887665 67889998765

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PHA03098 kelch-like protein; Provisional

Probab=84.17  E-value=20  Score=29.29  Aligned_cols=23  Identities=13%  Similarity=0.328  Sum_probs=15.2

Q ss_pred             CCCEEEEEcCC-----CcEEEEECCCCc
Q 043942           25 DGQLLASGGFH-----GLVQNRDTSSRN   47 (216)
Q Consensus        25 ~~~~l~s~~~d-----~~v~vwd~~~~~   47 (216)
                      +++.++.||.+     ..+..||..+.+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            56677777765     346778877654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.85  E-value=22  Score=28.95  Aligned_cols=118  Identities=14%  Similarity=0.241  Sum_probs=71.9

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc-------EEEEecCCCeEEEEeCCC-CceeEEeecccccccccce
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-------TICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYW  132 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~  132 (216)
                      ...++--|++.|+.+..+.-|...  -+.|.|..+       .-+.|-.+..|.-.|.+- |..+....           
T Consensus       489 ~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-----------  555 (776)
T COG5167         489 RDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-----------  555 (776)
T ss_pred             cccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-----------
Confidence            334455566777777777766553  577777432       233444555566666653 32222221           


Q ss_pred             EEEeeeecCeEEEEeCC----CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942          133 MICTSLYDGVTCLSWPG----TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVF  194 (216)
Q Consensus       133 ~~~~~~~~~v~~~~~~~----~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw  194 (216)
                           ..+.++.-.|+.    ...++++++..|.|              .+....|..+..+.+|+++++.+ ...+.+-
T Consensus       556 -----sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~  629 (776)
T COG5167         556 -----SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLT  629 (776)
T ss_pred             -----ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEE
Confidence                 223333333432    44689999999887              55667899999999999876554 4567777


Q ss_pred             Ecc
Q 043942          195 EIA  197 (216)
Q Consensus       195 ~~~  197 (216)
                      |++
T Consensus       630 d~~  632 (776)
T COG5167         630 DVP  632 (776)
T ss_pred             ecc
Confidence            764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.26  E-value=28  Score=29.70  Aligned_cols=104  Identities=11%  Similarity=0.109  Sum_probs=60.7

Q ss_pred             CcEEEEecCCCeEEEEeCCCCceeEE------eec-ccccccccceEEEeeeecCeEEEEeCC--CCcEEEEecccCeE-
Q 043942           94 GKTICTGSDNATLSIWNPKGGENFHA------IRR-SSLEFSLNYWMICTSLYDGVTCLSWPG--TSKYLVTGCVDGKV-  163 (216)
Q Consensus        94 ~~~l~t~~~d~~i~~wd~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~i-  163 (216)
                      .+++++|. .+.|.||+++.-.....      +.. ...................|+.+....  +...|+.+.+||.+ 
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            55666654 67899999875433211      111 111000111010001334466665543  45678888999988 


Q ss_pred             --------------------------------EeeeCCEEEEEEe--cCCCeEEEEeCCCcEEEEEccc
Q 043942          164 --------------------------------DGHIDAIQSLSVS--AIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       164 --------------------------------~~~~~~i~~~~~~--~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                                                      .......++++++  ...++||+++....|.||-+..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l  196 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL  196 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence                                            1112467889988  7788889888888888887665

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=82.95  E-value=7.8  Score=23.16  Aligned_cols=40  Identities=8%  Similarity=0.064  Sum_probs=20.8

Q ss_pred             CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942          102 DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG  157 (216)
Q Consensus       102 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  157 (216)
                      .+|.+.-||..+++......                .-.-.+.+++++|+.+++.+
T Consensus        35 ~~GRll~ydp~t~~~~vl~~----------------~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLD----------------GLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEE----------------EESSEEEEEE-TTSSEEEEE
T ss_pred             CCcCEEEEECCCCeEEEehh----------------CCCccCeEEEcCCCCEEEEE
Confidence            45667777777665433333                22345666666666655543

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.83  E-value=23  Score=28.45  Aligned_cols=38  Identities=16%  Similarity=0.183  Sum_probs=27.1

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR   46 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~   46 (216)
                      .+-..-...+.|+|.|||++|++--..|.|++++..++
T Consensus        24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~   61 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETG   61 (454)
T ss_pred             EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence            34444566789999999988877655688888775443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=82.40  E-value=8.3  Score=23.05  Aligned_cols=40  Identities=5%  Similarity=0.023  Sum_probs=28.3

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG  100 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~  100 (216)
                      ..|.+.-||+.+++....+.+- .-.+.+++++|+.+++.+
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEE
T ss_pred             CCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEE
Confidence            6889999999988765445443 457899999999977665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=81.89  E-value=18  Score=26.50  Aligned_cols=53  Identities=17%  Similarity=0.198  Sum_probs=33.1

Q ss_pred             CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942           93 DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus        93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      .++.|+.|+.+| +.+++...........                ....|..+..-|+-+.+++-++ +.+
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~----------------~~~~I~ql~vl~~~~~llvLsd-~~l   58 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL----------------KLSSITQLSVLPELNLLLVLSD-GQL   58 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe----------------ecceEEEEEEecccCEEEEEcC-Ccc
Confidence            578899998888 9999983333222222                2334777777776665555443 444

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=81.62  E-value=23  Score=27.66  Aligned_cols=157  Identities=13%  Similarity=0.144  Sum_probs=82.3

Q ss_pred             cCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-Ccc---------------------c--CcEEEEEECC--Ccceeee
Q 043942           24 TDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-GGI---------------------E--DSTVWMWNAD--RGAYLNM   77 (216)
Q Consensus        24 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~~---------------------~--~~~v~i~d~~--~~~~~~~   77 (216)
                      |...+++...+++-+.+||+...+. +.+.... ..+                     .  ..+|++|.+.  ++. +..
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~l-q~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~  143 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKEL-QSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTD  143 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EE-EEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEE-EeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceE
Confidence            3456888888899999999975433 3332111 100                     2  2578888765  332 222


Q ss_pred             eec-------cCCCeeEEEE--cC-CCc-EEEEecCCCeEEEEeCC---CC----ceeEEeecccccccccceEEEeeee
Q 043942           78 FSG-------HGSGLTCGDF--TT-DGK-TICTGSDNATLSIWNPK---GG----ENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        78 ~~~-------~~~~v~~~~~--~~-~~~-~l~t~~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      +..       ....+..+++  +| +|. +++....+|.+..|.+.   ++    +.++.|..                .
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----------------~  207 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----------------G  207 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----------------S
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----------------C
Confidence            221       1123566665  33 454 55567788988888775   22    23444442                3


Q ss_pred             cCeEEEEeCCCCcEEEEecccCeE---------------------EeeeCCEEEEEEe--cCC-CeEEEEeC-CCcEEEE
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDGKV---------------------DGHIDAIQSLSVS--AIR-ESLVSVSV-DGTARVF  194 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~~i---------------------~~~~~~i~~~~~~--~~~-~~l~s~~~-d~~v~vw  194 (216)
                      ..+..+........|+.+-++.-|                     ......|..+++-  +++ .||+.+++ +++..||
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy  287 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVY  287 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEE
T ss_pred             CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEE
Confidence            345555555555555555554444                     1123456666663  343 36665554 7889999


Q ss_pred             Eccc
Q 043942          195 EIAE  198 (216)
Q Consensus       195 ~~~~  198 (216)
                      +.+.
T Consensus       288 ~r~~  291 (381)
T PF02333_consen  288 DREG  291 (381)
T ss_dssp             ESST
T ss_pred             ecCC
Confidence            9765

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein

Probab=81.48  E-value=12  Score=24.33  Aligned_cols=31  Identities=23%  Similarity=0.242  Sum_probs=24.9

Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEEeCCCCc
Q 043942           28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRGG   58 (216)
Q Consensus        28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~   58 (216)
                      +.+....||.|.+++..+++.+..+....++
T Consensus        43 l~f~d~~~G~v~V~~~~~G~~va~~~~g~~G   73 (135)
T TIGR03054        43 LVFEDRPDGAVAVVETPDGRLVAILEPGQNG   73 (135)
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEecCCCCc
Confidence            4556678999999999999999999766554

In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=81.19  E-value=7.9  Score=33.26  Aligned_cols=38  Identities=0%  Similarity=-0.031  Sum_probs=31.0

Q ss_pred             CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEe
Q 043942           83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI  120 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~  120 (216)
                      +.|.++....-+..++.+-.||+|.++|-.+.+.+...
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~  297 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET  297 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc
Confidence            45777777777888999999999999999988766555

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=80.48  E-value=22  Score=26.74  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=24.5

Q ss_pred             eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe
Q 043942           17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE   53 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~   53 (216)
                      |+++...++|++|+|+-.-..|.+.|..+++.+..+.
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lg  182 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLG  182 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeC
Confidence            6677777778888887766666666666655544443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=80.44  E-value=13  Score=24.13  Aligned_cols=99  Identities=14%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECC--------CcceeeeeeccCCCeeEE
Q 043942           17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNAD--------RGAYLNMFSGHGSGLTCG   88 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~--------~~~~~~~~~~~~~~v~~~   88 (216)
                      |..-.|......|+.++                          ..++|.|++..        ....+..+. -...|+++
T Consensus         1 VaiGkfDG~~pcL~~aT--------------------------~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~ital   53 (136)
T PF14781_consen    1 VAIGKFDGVHPCLACAT--------------------------TGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITAL   53 (136)
T ss_pred             CeEEEeCCCceeEEEEe--------------------------cCCEEEEECCCccccccccccCceeEEE-CCCceEEE


Q ss_pred             EEcC----CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe----CCCCcEEEEec
Q 043942           89 DFTT----DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW----PGTSKYLVTGC  158 (216)
Q Consensus        89 ~~~~----~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l~~~~  158 (216)
                      +-.+    +++-++.-+....+..||+.+...+.-..                -.+.++++.+    ......+++|+
T Consensus        54 aaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke----------------~~DGvn~i~~g~~~~~~~~l~ivGG  115 (136)
T PF14781_consen   54 AAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKE----------------VPDGVNAIVIGKLGDIPSPLVIVGG  115 (136)
T ss_pred             EEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhh----------------CccceeEEEEEecCCCCCcEEEECc

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-09
2h9l_A	329	Wdr5delta23 Length = 329		3e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-09
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		8e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-04

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 199
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 229

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 75  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 189
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 219

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 196
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 226

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 193
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 223

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 96  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 210
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 240

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 199
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 229

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 196
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 226

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 78  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 192
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 222

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 193
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 223

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 80  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 194
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 224

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 84  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 198
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 228

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 199
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 229

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 217
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 247

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LAS     L++         + T+ G + GI          
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 215
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 245

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
           + GH  + SS+ FS +G+ LA+     L++         + T+ G + GI          
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 60  ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
                 +D T+ +W+   G  L    GH + + C +F      I +GS + ++ IW+ K 
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
           G+       H+   S++ F+ +  +I +S YDG+ C  W   S      C+   +D    
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 196
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
            +  +  S   + +++ ++D T ++++ ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 226

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 29/206 (14%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC------TVEG----PRGGI 59
           + GH  S   +AFS DGQ +AS      V+  + + + LQ       +V G    P G  
Sbjct: 53  LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 112
Query: 60  -----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG 114
                +D TV +WN + G  L   +GH S +    F+ DG+TI + SD+ T+ +WN + G
Sbjct: 113 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNG 170
Query: 115 ENFHAIRRSS-----LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDA 169
           +    +   S     + FS +   I ++  D    L W    + L T      + GH  +
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL-WNRNGQLLQT------LTGHSSS 223
Query: 170 IQSLSVSAIRESLVSVSVDGTARVFE 195
           ++ ++ S   +++ S S D T +++ 
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWN 249

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 80/222 (36%), Gaps = 60/222 (27%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNA 69
           +  H D+     FS DGQ +AS G                           D T+ ++ A
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCG--------------------------ADKTLQVFKA 651
Query: 70  DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL 129
           + G  L     H   + C  F++D   I T S +  + IW+   G+  H     S     
Sbjct: 652 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS----- 706
Query: 130 NYWMICTSLYDGVTCLSWPGTSKYLV--TGCVD--------------GKVDGHIDAIQSL 173
                     + V C  +   S +L+  TG  D                + GH +++   
Sbjct: 707 ----------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 756
Query: 174 SVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL 215
             S   E L S S DGT R++++   R A +  S + K FFL
Sbjct: 757 RFSPDDELLASCSADGTLRLWDV---RSANERKSINVKRFFL 795

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 80/222 (36%), Gaps = 60/222 (27%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNA 69
           +  H D+     FS DGQ +AS G                           D T+ ++ A
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCG--------------------------ADKTLQVFKA 644
Query: 70  DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL 129
           + G  L     H   + C  F++D   I T S +  + IW+   G+  H     S     
Sbjct: 645 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS----- 699
Query: 130 NYWMICTSLYDGVTCLSWPGTSKYLV--TGCVD--------------GKVDGHIDAIQSL 173
                     + V C  +   S +L+  TG  D                + GH +++   
Sbjct: 700 ----------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 174 SVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL 215
             S   E L S S DGT R++++   R A +  S + K FFL
Sbjct: 750 RFSPDDELLASCSADGTLRLWDV---RSANERKSINVKRFFL 788

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE-----------GPRG 57
           +  H D  S++ F+ DG L+ S  + GL +  DT+S + L+  ++            P G
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 58  -----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTGSDNATLSIW 109
                   D+T+ +W+  +G  L  ++GH +   C   +F+ T GK I +GS++  + IW
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 110 NPKGGENFHAIR 121
           N +  E    ++
Sbjct: 268 NLQTKEIVQKLQ 279

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 55/202 (27%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNA 69
           + GH  + SS+ FS +G+ LAS     L++                          +W A
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIK--------------------------IWGA 55
Query: 70  DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL 129
             G +    SGH  G++   +++D   + + SD+ TL IW+   G+    ++  S     
Sbjct: 56  YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----- 110
Query: 130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSV 175
           NY          V C ++   S  +V+G  D  V                H D + ++  
Sbjct: 111 NY----------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 176 SAIRESLVSVSVDGTARVFEIA 197
           +     +VS S DG  R+++ A
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTA 182

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 55/202 (27%)
Query: 10  ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNA 69
           + GH  + SS+ FS +G+ LAS     L++                          +W A
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIK--------------------------IWGA 55
Query: 70  DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL 129
             G +    SGH  G++   +++D   + + SD+ TL IW+   G+    ++  S     
Sbjct: 56  YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----- 110
Query: 130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSV 175
           NY          V C ++   S  +V+G  D  V                H D + ++  
Sbjct: 111 NY----------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 176 SAIRESLVSVSVDGTARVFEIA 197
           +     +VS S DG  R+++ A
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTA 182

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 58  GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF 117
           G  D T+ +WNA+ G  ++   GH S + C       K + +GS +ATL +W+ + G+  
Sbjct: 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCL 232
Query: 118 HAIRRSSLEFSLNYW---MICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLS 174
           H +           +    + +  YD +  +  P T   L T      + GH + + SL 
Sbjct: 233 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT------LQGHTNRVYSLQ 286
Query: 175 VSAIRESLVSVSVDGTARVFEI 196
              I   +VS S+D + RV+++
Sbjct: 287 FDGIH--VVSGSLDTSIRVWDV 306

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 66/213 (30%)
Query: 19  SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMF 78
           S+ FS DG+ LA+G                           ED  + +W+ +    + + 
Sbjct: 128 SVCFSPDGKFLATGA--------------------------EDRLIRIWDIENRKIVMIL 161
Query: 79  SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138
            GH   +   D+   G  + +GS + T+ IW+ + G+        SL  S+         
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------CSLTLSIE-------- 206
Query: 139 YDGVTCLSW-PGTSKYLVTGCVDGKV---------------------DGHIDAIQSLSVS 176
            DGVT ++  PG  KY+  G +D  V                      GH D++ S+  +
Sbjct: 207 -DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 177 AIRESLVSVSVDGTARVFEI--AEFRRATKAPS 207
              +S+VS S+D + +++ +  A  +  +K P+
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 12/145 (8%)
Query: 61  DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
           D ++ +WN   G     F GH   +    F+ D + I +G  +  L +WN K GE  H +
Sbjct: 88  DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTL 146
Query: 121 RRSSLEFSLNYWMICTSL---YDGVTCLS--WPGTSKY--LVTGCVDGKVDGHIDAIQSL 173
            R     +   W+ C       D    +S  W    K   L TG +   + GH + + S+
Sbjct: 147 SRG----AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Query: 174 SVSAIRESLVSVSVDGTARVFEIAE 198
           +VS       S   DG AR++++ +
Sbjct: 203 TVSPDGSLCASSDKDGVARLWDLTK 227

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 58/166 (34%), Gaps = 31/166 (18%)
Query: 4   GDWASEILGHKDSFSSLAFSTDGQLLASGG---------FHGL--VQNRDTSSRNLQCTV 52
           GD+   + GH DS   ++F   G+LLAS           F G   ++       N+    
Sbjct: 140 GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 199
Query: 53  EGPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLS 107
             P G        D T+ MW    G  +  F+GH   +       DG  I + S++ T+ 
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259
Query: 108 IWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153
           +W     E    +R                    V C+SW   S Y
Sbjct: 260 VWVVATKECKAELREHR---------------HVVECISWAPESSY 290

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 26/163 (15%)
Query: 58  GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT--TDGKTICTGSDNATLSIWN-PK-- 112
           G  D TV +W+  +G   ++F GH S + C D     + K I TGS + TL +W  PK  
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 113 -----GGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK----- 162
                G E+ + +   + E +  +  +       V  +S  G    +V+G  D       
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWD 296
Query: 163 ---------VDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196
                    + GH D I S      R+  +S S+D T R++++
Sbjct: 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 58  GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT--TDGKTICTGSDNATLSIWN-PK-- 112
           G  D TV +W+  +G   ++F GH S + C D     + K I TGS + TL +W  PK  
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 113 -----GGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK----- 162
                G E+ + +   + E +  +  +       V  +S  G    +V+G  D       
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWD 296
Query: 163 ---------VDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196
                    + GH D I S      R+  +S S D T R++++
Sbjct: 297 VAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.98
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.98
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.98
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.83
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.82
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.82
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.81
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.79
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.79
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.75
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.74
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.74
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.74
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.73
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.72
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.68
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.68
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.66
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.64
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.61
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.6
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.6
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.59
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.59
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.58
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.58
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.56
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.55
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.49
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.49
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.46
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.44
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.43
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.42
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.39
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.33
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.32
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.31
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.29
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.29
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.29
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.27
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.26
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.25
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.25
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.22
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.21
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.19
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.15
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.13
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.13
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.12
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.12
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.11
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.1
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.08
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.06
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.03
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.02
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.01
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.01
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.98
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.95
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.95
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.95
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.92
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.88
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.86
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.78
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.73
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.72
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.72
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.71
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.68
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.67
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.66
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.65
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.64
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.63
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.62
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.61
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.58
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.54
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.53
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.53
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.52
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.41
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.35
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.32
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.29
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.08
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.08
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.07
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.06
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.99
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.97
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.95
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.92
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.87
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.84
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.82
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.78
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.77
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.77
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.75
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.67
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.62
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.56
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.55
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.53
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.51
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.45
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.44
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.44
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.38
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.34
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.3
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.3
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.29
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.21
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.15
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.12
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.1
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.02
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.02
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.82
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.76
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.71
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.66
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.62
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.6
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.45
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.38
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.38
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.32
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.3
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.03
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.77
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.74
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.73
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.69
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.67
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.49
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.43
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.21
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.14
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.02
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.66
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.54
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.37
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.34
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.1
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.94
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	93.32
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.83
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	92.71
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.7
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.16
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	92.11
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	91.85
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	91.23
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.96
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.69
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.62
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.59
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.84
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.49
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	87.94
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	87.28
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	87.24
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	87.04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	86.17
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	84.37
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	84.3
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.18
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.78
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	81.82
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	81.61
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	81.03
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	80.3

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.6e-38  Score=231.89  Aligned_cols=206  Identities=15%  Similarity=0.222  Sum_probs=168.9

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~   67 (216)
                      -+..+++++|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..+...+                .|++|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            35678899999999999999999999999999999999999999999998877654                79999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecc-----cccccc-c-ce-------
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRS-----SLEFSL-N-YW-------  132 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~-----~~~~~~-~-~~-------  132 (216)
                      |+++++.+..+.+|...|.+++|+|+++++++|+.|++|++||++++.. ...+...     ...+.+ . ..       
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            9999999999999999999999999999999999999999999987743 3333321     011111 0 01       


Q ss_pred             ---------------EEEeeeecCeEEEEeCC--CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCe
Q 043942          133 ---------------MICTSLYDGVTCLSWPG--TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRES  181 (216)
Q Consensus       133 ---------------~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~  181 (216)
                                     ....++...+..+.|+|  ++.++++++.|+.+              .+|...|..++|+|++++
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  242 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI  242 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence                           11112345677777765  66788888888877              678899999999999999


Q ss_pred             EEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          182 LVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       182 l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      |++++.||+|++||+.+++....+..+.
T Consensus       243 l~s~s~Dg~i~iWd~~~~~~~~~~~~~~  270 (304)
T 2ynn_A          243 IISGSEDGTLKIWNSSTYKVEKTLNVGL  270 (304)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred             EEEEcCCCeEEEEECCCCceeeeccCCC
Confidence            9999999999999999888776665543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.1e-36  Score=226.23  Aligned_cols=194  Identities=18%  Similarity=0.247  Sum_probs=169.9

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------------
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------------   59 (216)
                      +...++++|.+.|++++|+|++++|++++.|+.|++||..+++....+..+...+                         
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~  125 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            4567899999999999999999999999999999999998877666555433211                         


Q ss_pred             ------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC
Q 043942           60 ------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN  103 (216)
Q Consensus        60 ------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d  103 (216)
                                                          .|++|++||+++++.+..+.+|.+.|.+++|+|+++++++|+.|
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d  205 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence                                                57889999999999889999999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------Ee---ee
Q 043942          104 ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DG---HI  167 (216)
Q Consensus       104 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~---~~  167 (216)
                      +.|++||+++++....+..               |...|.+++|+|++++|++++.|+.+             ..   +.
T Consensus       206 ~~v~~wd~~~~~~~~~~~~---------------h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~  270 (340)
T 1got_B          206 ASAKLWDVREGMCRQTFTG---------------HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII  270 (340)
T ss_dssp             SCEEEEETTTCSEEEEECC---------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred             CcEEEEECCCCeeEEEEcC---------------CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc
Confidence            9999999999998888876               89999999999999999999999988             11   22


Q ss_pred             CCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942          168 DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF  213 (216)
Q Consensus       168 ~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~  213 (216)
                      ..|.+++|+|++++|++++.|+.|++||+.+.+....+..|...+.
T Consensus       271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~  316 (340)
T 1got_B          271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS  316 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEE
Confidence            4799999999999999999999999999998887777776665443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-36  Score=233.04  Aligned_cols=197  Identities=23%  Similarity=0.377  Sum_probs=179.7

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV   64 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v   64 (216)
                      +++++++.++++|.+.|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...+                .|++|
T Consensus       137 ~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i  216 (410)
T 1vyh_C          137 YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI  216 (410)
T ss_dssp             TTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             CCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            35788889999999999999999999999999999999999999999888887776654                79999


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      ++||++++.++..+.+|...|.+++++|+++++++|+.|+.|++||+++++....+..               |...|.+
T Consensus       217 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~---------------h~~~v~~  281 (410)
T 1vyh_C          217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---------------HRHVVEC  281 (410)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC---------------CSSCEEE
T ss_pred             EEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC---------------CCceEEE
Confidence            9999999999999999999999999999999999999999999999999988888876               8899999


Q ss_pred             EEeCCC--------------------CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942          145 LSWPGT--------------------SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGT  190 (216)
Q Consensus       145 ~~~~~~--------------------~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~  190 (216)
                      ++|+|+                    +.++++++.|+.+              .+|...|.+++|+|++++|++++.|+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~  361 (410)
T 1vyh_C          282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT  361 (410)
T ss_dssp             EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            999996                    6789999999988              578899999999999999999999999


Q ss_pred             EEEEEcccccceeecCCcceeE
Q 043942          191 ARVFEIAEFRRATKAPSYSFKL  212 (216)
Q Consensus       191 v~vw~~~~~~~~~~~~~~~~~~  212 (216)
                      |++||+.+++....+..|...+
T Consensus       362 i~vwd~~~~~~~~~~~~h~~~v  383 (410)
T 1vyh_C          362 LRVWDYKNKRCMKTLNAHEHFV  383 (410)
T ss_dssp             EEEECCTTSCCCEEEECCSSCE
T ss_pred             EEEEECCCCceEEEEcCCCCcE
Confidence            9999999888777776665443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.1e-36  Score=223.71  Aligned_cols=192  Identities=16%  Similarity=0.221  Sum_probs=175.0

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~   69 (216)
                      +...+.+|...|.+++|++++.++++++.|+.|++||+.+++.+..+..+...+                .++.|++||+
T Consensus        72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            345688999999999999999999999999999999999999998887765433                7899999999


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ++++....+..|...+.+++|+|++++|++|+.|+.|++||+++++.+..+..               |..+|.+++|+|
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---------------h~~~v~~l~~sp  216 (321)
T 3ow8_A          152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG---------------HAMPIRSLTFSP  216 (321)
T ss_dssp             TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---------------CSSCCCEEEECT
T ss_pred             CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc---------------cCCceeEEEEcC
Confidence            99999999999999999999999999999999999999999999998888876               889999999999


Q ss_pred             CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeE
Q 043942          150 TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKL  212 (216)
Q Consensus       150 ~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~  212 (216)
                      ++++|++++.|+.+              .+|...|.+++|+|++++|++++.|++|++||+.+++++..+..+...+
T Consensus       217 d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v  293 (321)
T 3ow8_A          217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV  293 (321)
T ss_dssp             TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcE
Confidence            99999999999988              5688899999999999999999999999999999988887776665444

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=227.52  Aligned_cols=178  Identities=16%  Similarity=0.183  Sum_probs=154.2

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG   72 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~   72 (216)
                      +.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+..+.+|...+                 .|++|++||++++
T Consensus       123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~  202 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP  202 (344)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc
Confidence            44899999999999999999999999999999999999999999887765                 7899999999999


Q ss_pred             ceeeeee--ccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           73 AYLNMFS--GHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        73 ~~~~~~~--~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ++...+.  .|...+.+++|+|+ ++++++|+.|+.|++||+++++.+..+..               |...|++++|+|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---------------h~~~v~~v~fsp  267 (344)
T 4gqb_B          203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---------------HSQCVTGLVFSP  267 (344)
T ss_dssp             SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC---------------CSSCEEEEEECS
T ss_pred             ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC---------------CCCCEEEEEEcc
Confidence            8887764  45567899999994 56889999999999999999999988887               999999999999


Q ss_pred             CC-cEEEEecccCeE-------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEcccccce
Q 043942          150 TS-KYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       150 ~~-~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      ++ ++|++++.|+.+             .+|...|.+++|+|+++ +|++++.|++|++|++.+....
T Consensus       268 ~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          268 HSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             SSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred             CCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence            98 579999999988             67899999999999986 5678999999999999875443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.6e-36  Score=228.19  Aligned_cols=189  Identities=15%  Similarity=0.233  Sum_probs=174.0

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~   70 (216)
                      ...+.+|.++|++++|+|++++|++|+.|+.|++||+.+++....+.+|...+                .|++|++||++
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            55788999999999999999999999999999999999999999998887765                79999999999


Q ss_pred             CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      +++.+..+.+|...|.+++|+|+++++++|+.|+.|++||++++..+..+..               |...+.++.++|+
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---------------h~~~v~~~~~~~~  245 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG---------------HREWVRMVRPNQD  245 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---------------CSSCEEEEEECTT
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC---------------CCccEEEEEECCC
Confidence            9999999999999999999999999999999999999999999998888876               8899999999999


Q ss_pred             CcEEEEecccCeE--------------EeeeCCEEEEEEecC--------------------CCeEEEEeCCCcEEEEEc
Q 043942          151 SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAI--------------------RESLVSVSVDGTARVFEI  196 (216)
Q Consensus       151 ~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~--------------------~~~l~s~~~d~~v~vw~~  196 (216)
                      +.++++++.|+.+              ..|...|.+++|+|+                    +.+|++++.|+.|++||+
T Consensus       246 g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~  325 (410)
T 1vyh_C          246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  325 (410)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999988              468889999999996                    678999999999999999


Q ss_pred             ccccceeecCCcce
Q 043942          197 AEFRRATKAPSYSF  210 (216)
Q Consensus       197 ~~~~~~~~~~~~~~  210 (216)
                      .+++....+..|..
T Consensus       326 ~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          326 STGMCLMTLVGHDN  339 (410)
T ss_dssp             TTTEEEEEEECCSS
T ss_pred             CCCceEEEEECCCC
Confidence            99887776665543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=220.26  Aligned_cols=182  Identities=20%  Similarity=0.255  Sum_probs=168.3

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV   64 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v   64 (216)
                      +++++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....+..+...+                .|+.|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i  188 (321)
T 3ow8_A          109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII  188 (321)
T ss_dssp             TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence            35778888999999999999999999999999999999999999998888777665433                79999


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      ++||+++++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++....+..               |...|.+
T Consensus       189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------------h~~~v~~  253 (321)
T 3ow8_A          189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---------------HASWVLN  253 (321)
T ss_dssp             EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC---------------CSSCEEE
T ss_pred             EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC---------------CCCceEE
Confidence            9999999999999999999999999999999999999999999999999988888876               8999999


Q ss_pred             EEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          145 LSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       145 ~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      ++|+|++++|++++.|+.+              .+|...|.+++|+|++++|++++.|+.|++||..
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999988              4688999999999999999999999999999963

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.8e-35  Score=219.23  Aligned_cols=194  Identities=20%  Similarity=0.303  Sum_probs=168.1

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC-----------------------------
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP-----------------------------   55 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-----------------------------   55 (216)
                      +..+++++|.+.|++++|+|++++|+||+.|++|++||..+++....+..+                             
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            457789999999999999999999999999999999998887665544332                             


Q ss_pred             -------------------CCcc----------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC--CCcEEE
Q 043942           56 -------------------RGGI----------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT--DGKTIC   98 (216)
Q Consensus        56 -------------------~~~~----------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~   98 (216)
                                         ...+                .|++|++||+++++.+..+.+|...|.+++|+|  ++++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence                               1111                789999999999999999999999999999988  568999


Q ss_pred             EecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------E-
Q 043942           99 TGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------D-  164 (216)
Q Consensus        99 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~-  164 (216)
                      +|+.|+.|++||+++++.+..+..               |...|.+++|+|++.+|++++.|+.+             . 
T Consensus       215 sgs~Dg~v~~wd~~~~~~~~~~~~---------------h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~  279 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQCVQAFET---------------HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS  279 (354)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECC---------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEeCCCeEEEEECCCCcEEEEecC---------------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            999999999999999998888876               89999999999999999999999988             0 


Q ss_pred             --eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942          165 --GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF  213 (216)
Q Consensus       165 --~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~  213 (216)
                        .+...+.+++|+|++++|++++.|+.|++||+.+++....+..|...+.
T Consensus       280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~  330 (354)
T 2pbi_B          280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS  330 (354)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred             CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEE
Confidence              1224689999999999999999999999999998887777766655443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.2e-35  Score=215.64  Aligned_cols=188  Identities=21%  Similarity=0.402  Sum_probs=171.4

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~   67 (216)
                      ..+..++.+|.+.|++++|+|++++|++++.|+.|++|+..+++....+..|...+                .|+.|++|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            34567888999999999999999999999999999999999999988888877655                79999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      |+++++.+..+.+|...|.+++|+|+++++++++.|+.|++||+++++.+..+..               |..++.+++|
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------~~~~v~~~~~  157 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA---------------HSDPVSAVHF  157 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC---------------CSSCEEEEEE
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC---------------CCCcEEEEEE
Confidence            9999999999999999999999999999999999999999999999998888876               8899999999


Q ss_pred             CCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          148 PGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                      +|+++++++++.|+.+               ..+...+..++|+|++++|++++.|+.|++||+.+++......
T Consensus       158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT  231 (312)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence            9999999999999988               2345679999999999999999999999999999887665543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.8e-35  Score=218.36  Aligned_cols=180  Identities=19%  Similarity=0.278  Sum_probs=154.7

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------   59 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------   59 (216)
                      +.++..+++|...|.+++|+|++++|++++.|++|++||+.+++....+.+|...+                        
T Consensus        55 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw  134 (319)
T 3frx_A           55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW  134 (319)
T ss_dssp             EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            34677899999999999999999999999999999999999999988888877654                        


Q ss_pred             ---------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe
Q 043942           60 ---------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG  100 (216)
Q Consensus        60 ---------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~  100 (216)
                                                             .|+.|++||+++.+....+.+|...|.+++|+|++++|+++
T Consensus       135 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~  214 (319)
T 3frx_A          135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA  214 (319)
T ss_dssp             ETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred             ECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence                                                   34455566666555666677899999999999999999999


Q ss_pred             cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------
Q 043942          101 SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------  163 (216)
Q Consensus       101 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------  163 (216)
                      +.|+.|++||+++++.+..+.                ....+.+++|+|++.++++++.++..                 
T Consensus       215 ~~dg~i~iwd~~~~~~~~~~~----------------~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~  278 (319)
T 3frx_A          215 GKDGEIMLWNLAAKKAMYTLS----------------AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF  278 (319)
T ss_dssp             ETTCEEEEEETTTTEEEEEEE----------------CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCC
T ss_pred             eCCCeEEEEECCCCcEEEEec----------------CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccc
Confidence            999999999999998888776                45689999999999999988876632                 


Q ss_pred             ----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          164 ----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       164 ----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                          ..|...+.+++|+|+|++|++++.|+.|++||+.+.
T Consensus       279 ~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence                124567899999999999999999999999998764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.4e-35  Score=218.27  Aligned_cols=182  Identities=17%  Similarity=0.221  Sum_probs=153.4

Q ss_pred             CCceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCc-----eEEEEeCCCCcc-----------------
Q 043942            3 QGDWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRN-----LQCTVEGPRGGI-----------------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~-----------------   59 (216)
                      +.++..+|+||.+.|++++|+|+ +++|+||+.|++|++||+.+.+     ....+.+|...+                 
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            34566789999999999999997 6899999999999999987643     344455554433                 


Q ss_pred             --------------------------------------------------------------------------------
Q 043942           60 --------------------------------------------------------------------------------   59 (216)
Q Consensus        60 --------------------------------------------------------------------------------   59 (216)
                                                                                                      
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence                                                                                            


Q ss_pred             ------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceE
Q 043942           60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWM  133 (216)
Q Consensus        60 ------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  133 (216)
                            .|+.|++||+++++.+..+.+|.+.|++++|+|++++|++|+.|+.|++||+++++.+..+.            
T Consensus       187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------  254 (340)
T 4aow_A          187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD------------  254 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE------------
T ss_pred             EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec------------
Confidence                  67889999999998888999999999999999999999999999999999999998888776            


Q ss_pred             EEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------------EeeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942          134 ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------------DGHIDAIQSLSVSAIRESLVSVSVDGT  190 (216)
Q Consensus       134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~  190 (216)
                          +...+.++.|+|++.+++ ++.|+.+                       ..|...|++++|+|++++|++++.||.
T Consensus       255 ----~~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          255 ----GGDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             ----CSSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             ----CCceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence                557899999999876554 5567765                       357789999999999999999999999


Q ss_pred             EEEEEcccccc
Q 043942          191 ARVFEIAEFRR  201 (216)
Q Consensus       191 v~vw~~~~~~~  201 (216)
                      |+|||++++++
T Consensus       330 v~iW~~~tGtr  340 (340)
T 4aow_A          330 VRVWQVTIGTR  340 (340)
T ss_dssp             EEEEEEEC---
T ss_pred             EEEEeCCCcCC
Confidence            99999998753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.5e-35  Score=223.56  Aligned_cols=190  Identities=18%  Similarity=0.307  Sum_probs=155.0

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------   59 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------   59 (216)
                      ..+.+++++|.+.|++++|+|++++|++|+.|++|++||..+++....+..|...+                        
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            45678899999999999999999999999999999999998877666554321100                        


Q ss_pred             --------------------------------------------------------------------------------
Q 043942           60 --------------------------------------------------------------------------------   59 (216)
Q Consensus        60 --------------------------------------------------------------------------------   59 (216)
                                                                                                      
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence                                                                                            


Q ss_pred             ----------cCcEEEEEECC-CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccccc
Q 043942           60 ----------EDSTVWMWNAD-RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFS  128 (216)
Q Consensus        60 ----------~~~~v~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  128 (216)
                                .|++|++||++ +++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+++++.+..+........
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~  295 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND  295 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc
Confidence                      45566666665 3455666778999999999999999999999999999999999988877754211000


Q ss_pred             ccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942          129 LNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSVDGT  190 (216)
Q Consensus       129 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~  190 (216)
                              .+...+.+++|+|+|+++++++.||.+                  .+|...|.+++|+|+|++|++|+.|++
T Consensus       296 --------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          296 --------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             --------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             --------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence                    023358899999999999999999987                  258889999999999999999999999


Q ss_pred             EEEEEcccccc
Q 043942          191 ARVFEIAEFRR  201 (216)
Q Consensus       191 v~vw~~~~~~~  201 (216)
                      |++|++...+.
T Consensus       368 i~iW~~~~~~~  378 (380)
T 3iz6_a          368 LKIWAFSGHRK  378 (380)
T ss_dssp             EEEEECCSSSS
T ss_pred             EEEEecCCCcc
Confidence            99999987654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.8e-34  Score=214.07  Aligned_cols=186  Identities=22%  Similarity=0.274  Sum_probs=163.1

Q ss_pred             ceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCC-----ceEEEEeCCCCcc----------------cCc
Q 043942            5 DWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSR-----NLQCTVEGPRGGI----------------EDS   62 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~----------------~~~   62 (216)
                      .+..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++...     ..+..+.+|...+                .|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            4567889999999999999965 89999999999999998642     3456777777655                799


Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      +|++||+++++.+..+.+|...|.+++|+|+++++++|+.|+.|++||++ ++.+..+..               |...+
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~---------------h~~~v  151 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG---------------HNDWV  151 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECC---------------CSSCE
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEec---------------cCCcE
Confidence            99999999999999999999999999999999999999999999999997 455555655               88999


Q ss_pred             EEEEeCCC------CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          143 TCLSWPGT------SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       143 ~~~~~~~~------~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      .++.|.|.      +..+++++.|+.+              .+|...|.+++|+|++++|++++.|+.|++||+.+.+..
T Consensus       152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            99999985      4489999999988              468899999999999999999999999999999988776


Q ss_pred             eecC
Q 043942          203 TKAP  206 (216)
Q Consensus       203 ~~~~  206 (216)
                      ..+.
T Consensus       232 ~~~~  235 (319)
T 3frx_A          232 YTLS  235 (319)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.9e-34  Score=215.80  Aligned_cols=177  Identities=20%  Similarity=0.330  Sum_probs=159.7

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMW   67 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~   67 (216)
                      ....+.+|.+.|.+++|+|+++.|++++.|++|++||+++++.+..+.+|...+                  .|+.|++|
T Consensus       146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w  225 (354)
T 2pbi_B          146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW  225 (354)
T ss_dssp             GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred             cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence            456777899999999999999999999999999999999999998888776543                  78999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      |+++++++..+.+|...|.+++|+|+++.|++|+.|++|++||++.++.+..+....             +...+.+++|
T Consensus       226 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~-------------~~~~~~~~~~  292 (354)
T 2pbi_B          226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES-------------IIFGASSVDF  292 (354)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-------------CCSCEEEEEE
T ss_pred             ECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC-------------cccceeEEEE
Confidence            999999999999999999999999999999999999999999999887766654311             3457899999


Q ss_pred             CCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          148 PGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      +|+++++++++.|+.+              .+|...|.+++|+|+|++|++++.|++|++|+
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999987              57889999999999999999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=216.99  Aligned_cols=181  Identities=21%  Similarity=0.357  Sum_probs=155.9

Q ss_pred             CCceeEEeecccc-ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE--E-eCCCCcc----------------cCc
Q 043942            3 QGDWASEILGHKD-SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT--V-EGPRGGI----------------EDS   62 (216)
Q Consensus         3 ~g~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~-~~~~~~~----------------~~~   62 (216)
                      +.+++.++.+|.+ .|++++|+|+|++||+|+.|+.|++||+.++.....  + .+|...+                .|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            3467889999988 999999999999999999999999999988764322  2 3455443                799


Q ss_pred             EEEEEECCCc--ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce---eEEeecccccccccceEEEee
Q 043942           63 TVWMWNADRG--AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN---FHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        63 ~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ++++||++++  +.+..+.+|...|.+++|+|++++|++|+.|+.|++||++++..   +..+..               
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---------------  148 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS---------------  148 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC---------------
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC---------------
Confidence            9999999866  45678899999999999999999999999999999999987643   333443               


Q ss_pred             eecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      |...|.+++|+|++.+|++++.|+.+                .+|...|.+++|+|++++|++++.|++|++|+...
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            88899999999999999999999977                46788999999999999999999999999999743

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.6e-34  Score=213.11  Aligned_cols=177  Identities=21%  Similarity=0.376  Sum_probs=159.8

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN   68 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d   68 (216)
                      +....+.+|.+.|.++.|++++. +++++.|+.|++||+.+++....+.+|...+                .|+.|++||
T Consensus       134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd  212 (340)
T 1got_B          134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            35567889999999999999875 8999999999999999999999988877655                799999999


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      ++++..+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+....             +...|.+++|+
T Consensus       213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s  279 (340)
T 1got_B          213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-------------IICGITSVSFS  279 (340)
T ss_dssp             TTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-------------CCSCEEEEEEC
T ss_pred             CCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC-------------cccceEEEEEC
Confidence            99999999999999999999999999999999999999999999888776664211             34579999999


Q ss_pred             CCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          149 GTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       149 ~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      |+++++++++.|+.+              .+|..+|.+++|+|++++|++++.|+.|++||
T Consensus       280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999987              67899999999999999999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-34  Score=218.35  Aligned_cols=178  Identities=18%  Similarity=0.222  Sum_probs=155.8

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG   72 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~   72 (216)
                      ..+|.+.|++++|+|++++|++++.|+.|++||+++++.+..+..|...+                 .|+.|++||++++
T Consensus       135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~  214 (357)
T 4g56_B          135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP  214 (357)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS
T ss_pred             cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC
Confidence            44799999999999999999999999999999999999999988877654                 7899999999998


Q ss_pred             ceeeeee--ccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           73 AYLNMFS--GHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        73 ~~~~~~~--~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ++...+.  .|...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..               +...|++++|+|
T Consensus       215 ~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~---------------~~~~v~~l~~sp  279 (357)
T 4g56_B          215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV---------------HSQNITGLAYSY  279 (357)
T ss_dssp             SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC---------------CSSCEEEEEECS
T ss_pred             ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec---------------cceeEEEEEEcC
Confidence            8776554  46678999999997 56889999999999999999998888876               889999999999


Q ss_pred             CC-cEEEEecccCeE-------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcccccce
Q 043942          150 TS-KYLVTGCVDGKV-------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       150 ~~-~~l~~~~~~~~i-------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      ++ ++|++++.|+.+             .+|...|++++|+| ++++|++++.||+|++|++.+..+.
T Consensus       280 ~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          280 HSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             SSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            87 578999999988             57889999999998 7999999999999999999765433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-33  Score=211.16  Aligned_cols=181  Identities=20%  Similarity=0.300  Sum_probs=155.7

Q ss_pred             ceeEEeeccccceEEEEE-----cc-CCCEEEEEcCCCcEEEEECCCC-------ceEEEEeCCCCcc------------
Q 043942            5 DWASEILGHKDSFSSLAF-----ST-DGQLLASGGFHGLVQNRDTSSR-------NLQCTVEGPRGGI------------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~~------------   59 (216)
                      ++..++++|.+.|++++|     ++ ++++|++|+.|++|++||+.+.       .....+.+|...+            
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            456789999999999999     77 8999999999999999998753       3455666776654            


Q ss_pred             ----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEE
Q 043942           60 ----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMIC  135 (216)
Q Consensus        60 ----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  135 (216)
                          .|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ........            
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~------------  158 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEK------------  158 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTT------------
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecc------------
Confidence                7999999999999999999999999999999999999999999999999999843 32222210            


Q ss_pred             eeeecCeEEEEeCCCC----------cEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEE
Q 043942          136 TSLYDGVTCLSWPGTS----------KYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTAR  192 (216)
Q Consensus       136 ~~~~~~v~~~~~~~~~----------~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~  192 (216)
                      ..|...+.+++|+|++          .++++++.|+.+             .+|...|.+++|+|+|++|++++.|+.|+
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence            0177889999999987          789999999987             57889999999999999999999999999


Q ss_pred             EEEccc
Q 043942          193 VFEIAE  198 (216)
Q Consensus       193 vw~~~~  198 (216)
                      +||+.+
T Consensus       239 iwd~~~  244 (343)
T 2xzm_R          239 IWDILN  244 (343)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            999954

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-33  Score=213.59  Aligned_cols=187  Identities=24%  Similarity=0.328  Sum_probs=161.3

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeee
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFS   79 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~   79 (216)
                      .|.+++|+|+|++|++|+.|+.|++||+.+++....+.+|...+                .|++|++||+++++....+.
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            49999999999999999999999999999999999998887765                79999999999998887776


Q ss_pred             ccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           80 GHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        80 ~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                       +...+.+++|+| +++++++|+.|+.|++||+++++.+..+.....        ...+|...|.+++|+|++++|++++
T Consensus       205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~--------~~~~h~~~v~~v~~~~~g~~l~s~s  275 (393)
T 1erj_A          205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE--------SGTGHKDSVYSVVFTRDGQSVVSGS  275 (393)
T ss_dssp             -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc--------CCCCCCCCEEEEEECCCCCEEEEEe
Confidence             567799999999 899999999999999999999887766632110        0113788999999999999999999


Q ss_pred             ccCeE--------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCccee
Q 043942          159 VDGKV--------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFK  211 (216)
Q Consensus       159 ~~~~i--------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~  211 (216)
                      .|+.+                          .+|...|.+++|+|++++|++++.|+.|++||+.+++....+..|...
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~  354 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS  354 (393)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC
Confidence            99987                          247778999999999999999999999999999998887766665543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-33  Score=207.29  Aligned_cols=182  Identities=22%  Similarity=0.298  Sum_probs=149.1

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--ceEEEE-eC-CCCcc----------------c
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--NLQCTV-EG-PRGGI----------------E   60 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~-~~-~~~~~----------------~   60 (216)
                      +.+.++++++++|.++|++++|+|+  +|++|+.|+.|++||+..+  +....+ .. |...+                .
T Consensus         1 ~~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~   78 (330)
T 2hes_X            1 MASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF   78 (330)
T ss_dssp             --CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred             CcccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence            3567789999999999999999987  9999999999999999875  344445 23 55444                7


Q ss_pred             CcEEEEEECCC-------cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC----ceeEEeecccccccc
Q 043942           61 DSTVWMWNADR-------GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG----ENFHAIRRSSLEFSL  129 (216)
Q Consensus        61 ~~~v~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~  129 (216)
                      |++|++||++.       .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||++..    +.+..+..       
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-------  151 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-------  151 (330)
T ss_dssp             TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-------
T ss_pred             CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-------
Confidence            99999999853       3456778899999999999999999999999999999999532    33445554       


Q ss_pred             cceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecC--CCeEEEEeCCCcE
Q 043942          130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAI--RESLVSVSVDGTA  191 (216)
Q Consensus       130 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~--~~~l~s~~~d~~v  191 (216)
                              |...|.+++|+|++.+|++++.|+.+                .+|...|.+++|+|+  +.+|++++.|++|
T Consensus       152 --------h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v  223 (330)
T 2hes_X          152 --------HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV  223 (330)
T ss_dssp             --------CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred             --------CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence                    88999999999999999999999987                357889999999998  6789999999999


Q ss_pred             EEEEcccc
Q 043942          192 RVFEIAEF  199 (216)
Q Consensus       192 ~vw~~~~~  199 (216)
                      ++||+...
T Consensus       224 ~iw~~~~~  231 (330)
T 2hes_X          224 RVWKYMGD  231 (330)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEecCC
Confidence            99999764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=208.43  Aligned_cols=185  Identities=16%  Similarity=0.189  Sum_probs=154.1

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEE----eCCCCcc----------------cCcEEEEEECCC
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV----EGPRGGI----------------EDSTVWMWNADR   71 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~----~~~~~~~----------------~~~~v~i~d~~~   71 (216)
                      .|...|.+++|+|++ .|++|+.||.|++||+.+++.....    .+|...+                .|++|++||+++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            466789999999985 7889999999999999988655433    3566554                899999999999


Q ss_pred             cceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           72 GAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      ++.+..+.+|...|++++|+|++. ++++++.|+.|++||+++++....+....             +...+.+++|+|+
T Consensus       159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~p~  225 (344)
T 4gqb_B          159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA-------------PGYLPTSLAWHPQ  225 (344)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----------------CCCEEEEEECSS
T ss_pred             CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce-------------eeccceeeeecCC
Confidence            999999999999999999999875 78999999999999999998887765311             5567899999985


Q ss_pred             -CcEEEEecccCeE--------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEcccccceeecCCccee
Q 043942          151 -SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFRRATKAPSYSFK  211 (216)
Q Consensus       151 -~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~  211 (216)
                       ++++++|+.|+.+              .+|...|++++|+|++ ++|++++.|++|+|||+.+++.. .+..|.-.
T Consensus       226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~  301 (344)
T 4gqb_B          226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF  301 (344)
T ss_dssp             CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC
T ss_pred             CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC
Confidence             5688999999987              6789999999999998 58999999999999999887654 34444433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=210.81  Aligned_cols=202  Identities=18%  Similarity=0.253  Sum_probs=152.1

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc---eEEEEeCCCCcc----------------cCcEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN---LQCTVEGPRGGI----------------EDSTVW   65 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~----------------~~~~v~   65 (216)
                      +++.++.+|.+.|.+++|+|++++|++++.|+.|++||+.+++   ....+..|...+                .|++|+
T Consensus        96 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~  175 (345)
T 3fm0_A           96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK  175 (345)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEE
T ss_pred             EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEE
Confidence            4577889999999999999999999999999999999998764   344555555433                799999


Q ss_pred             EEECCCcc--eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe-eeecCe
Q 043942           66 MWNADRGA--YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT-SLYDGV  142 (216)
Q Consensus        66 i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v  142 (216)
                      +||.+++.  ....+.+|...|.+++|+|++++|++++.|++|++||.........+................ .|...|
T Consensus       176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  255 (345)
T 3fm0_A          176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI  255 (345)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred             EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence            99998775  456788999999999999999999999999999999974332111100000000000011111 277889


Q ss_pred             EEEEeCCCCcEEEEecccCeE-----------------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccc
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV-----------------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i-----------------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~  198 (216)
                      .+++|+|++..+++++.|+.+                       .+|...|.+++|+|++ .+|++++.||+|++|++.+
T Consensus       256 ~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          256 YDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             EEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            999999999999999999877                       1567889999999998 4899999999999999998


Q ss_pred             ccceeecC
Q 043942          199 FRRATKAP  206 (216)
Q Consensus       199 ~~~~~~~~  206 (216)
                      .+...+.|
T Consensus       336 ~~~~~~~~  343 (345)
T 3fm0_A          336 PEGLHHHH  343 (345)
T ss_dssp             --------
T ss_pred             CCCccccc
Confidence            88765544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.8e-33  Score=203.60  Aligned_cols=178  Identities=20%  Similarity=0.291  Sum_probs=151.6

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC--CceEEEEeCCCCcc------------------cCcEEEE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS--RNLQCTVEGPRGGI------------------EDSTVWM   66 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~~------------------~~~~v~i   66 (216)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|++||+..  .+.+.++.+|...+                  .|++|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            456789999999999999999999999999999999974  35666776665443                  7999999


Q ss_pred             EECCCcc--eeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeec
Q 043942           67 WNADRGA--YLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        67 ~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      ||+++++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..               |..
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~---------------h~~  146 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA---------------HAI  146 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC---------------CSS
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec---------------ccC
Confidence            9999774  55667889999999999997  88999999999999999987632  233333               888


Q ss_pred             CeEEEEeCCC-------------CcEEEEecccCeE------------------EeeeCCEEEEEEecCC---CeEEEEe
Q 043942          141 GVTCLSWPGT-------------SKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIR---ESLVSVS  186 (216)
Q Consensus       141 ~v~~~~~~~~-------------~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~---~~l~s~~  186 (216)
                      .|.+++|+|+             +++|++++.|+.+                  .+|...|.+++|+|++   ++|++++
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence            9999999997             5799999999977                  3578899999999984   8999999


Q ss_pred             CCCcEEEEEcccc
Q 043942          187 VDGTARVFEIAEF  199 (216)
Q Consensus       187 ~d~~v~vw~~~~~  199 (216)
                      .|++|++||+.+.
T Consensus       227 ~D~~v~iWd~~~~  239 (297)
T 2pm7_B          227 QDRTCIIWTQDNE  239 (297)
T ss_dssp             TTSCEEEEEESST
T ss_pred             CCCcEEEEEeCCC
Confidence            9999999999764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.9e-33  Score=210.14  Aligned_cols=197  Identities=22%  Similarity=0.327  Sum_probs=156.6

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc-----------c-----cCcEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG-----------I-----EDSTV   64 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-----------~-----~~~~v   64 (216)
                      +++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+..+...           .     .|+.|
T Consensus       152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v  231 (393)
T 1erj_A          152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV  231 (393)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred             CCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence            3567788899999999999999999999999999999999999999877766543221           1     78999


Q ss_pred             EEEECCCcceeeee-------eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           65 WMWNADRGAYLNMF-------SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        65 ~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ++||++++..+..+       .+|...|.+++|+|++++|++|+.|+.|++||+++..........   ..........+
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~---~~~~~~~~~~~  308 (393)
T 1erj_A          232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP---NSGTCEVTYIG  308 (393)
T ss_dssp             EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------CEEEEEEC
T ss_pred             EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC---CCCcceEEEec
Confidence            99999998877766       578999999999999999999999999999999865432211100   00011122334


Q ss_pred             eecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEec------CCCeEEEEeCCCcEEEEEcc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSA------IRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~------~~~~l~s~~~d~~v~vw~~~  197 (216)
                      |...|.+++|+|++.+|++++.|+.+              .+|...|.+++|++      ++++|++++.||+|++|++.
T Consensus       309 h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            88899999999999999999999988              67889999999986      68899999999999999987


Q ss_pred             ccc
Q 043942          198 EFR  200 (216)
Q Consensus       198 ~~~  200 (216)
                      ..+
T Consensus       389 ~~~  391 (393)
T 1erj_A          389 KIA  391 (393)
T ss_dssp             EC-
T ss_pred             ccC
Confidence            543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.4e-32  Score=200.95  Aligned_cols=197  Identities=22%  Similarity=0.331  Sum_probs=168.9

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVW   65 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~   65 (216)
                      .+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...+                .|+.|+
T Consensus        53 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~  132 (312)
T 4ery_A           53 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR  132 (312)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             CCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            4677888999999999999999999999999999999999999999999988877654                799999


Q ss_pred             EEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           66 MWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        66 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      +||+++++.+..+..|...|.+++|+|+++++++++.|+.|++||+++++.+..+...              +...+..+
T Consensus       133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------------~~~~~~~~  198 (312)
T 4ery_A          133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--------------DNPPVSFV  198 (312)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS--------------SCCCEEEE
T ss_pred             EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc--------------CCCceEEE
Confidence            9999999999999999999999999999999999999999999999998877665431              56679999


Q ss_pred             EeCCCCcEEEEecccCeE--------------EeeeCCE--EEEEEe-cCCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942          146 SWPGTSKYLVTGCVDGKV--------------DGHIDAI--QSLSVS-AIRESLVSVSVDGTARVFEIAEFRRATKAPSY  208 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i--------------~~~~~~i--~~~~~~-~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~  208 (216)
                      +|+|+++++++++.|+.+              .+|...+  ....++ +++++|++++.||.|++||+.+++....+..|
T Consensus       199 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  278 (312)
T 4ery_A          199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH  278 (312)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence            999999999999999988              2232221  222343 67889999999999999999998887777666


Q ss_pred             ceeE
Q 043942          209 SFKL  212 (216)
Q Consensus       209 ~~~~  212 (216)
                      ...+
T Consensus       279 ~~~v  282 (312)
T 4ery_A          279 TDVV  282 (312)
T ss_dssp             SSCE
T ss_pred             CCcE
Confidence            5443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-32  Score=220.81  Aligned_cols=187  Identities=20%  Similarity=0.259  Sum_probs=162.1

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------c---
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------E---   60 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~---   60 (216)
                      ++++....+.+|.+.|++++|+|+|++||+|+.|++|++||+.+++  ....+..|...+                .   
T Consensus        47 ~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~  126 (611)
T 1nr0_A           47 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  126 (611)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             CCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence            4677888999999999999999999999999999999999997543  345666666544                1   


Q ss_pred             -CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           61 -DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        61 -~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                       .+.|++||  ++.....+.+|...|.+++|+|++. .|++|+.|++|++||..+++....+..               |
T Consensus       127 ~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~---------------H  189 (611)
T 1nr0_A          127 RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---------------H  189 (611)
T ss_dssp             CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---------------C
T ss_pred             ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc---------------c
Confidence             14677777  4666778899999999999999987 599999999999999998888887776               9


Q ss_pred             ecCeEEEEeCCCCcEEEEecccCeE--------------E-------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVDGKV--------------D-------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~~~i--------------~-------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      ...|.+++|+|++++|++++.|+.+              .       +|...|.+++|+|++++|++++.|++|++||+.
T Consensus       190 ~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~  269 (611)
T 1nr0_A          190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  269 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999988              1       688999999999999999999999999999999


Q ss_pred             cccceeec
Q 043942          198 EFRRATKA  205 (216)
Q Consensus       198 ~~~~~~~~  205 (216)
                      +++....+
T Consensus       270 ~~~~~~~~  277 (611)
T 1nr0_A          270 TLKVEKTI  277 (611)
T ss_dssp             TTEEEEEE
T ss_pred             CCceeeee
Confidence            87766544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.5e-32  Score=216.81  Aligned_cols=175  Identities=27%  Similarity=0.477  Sum_probs=159.3

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWM   66 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i   66 (216)
                      +++++.++.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...+                .|+.|++
T Consensus       374 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~  452 (577)
T 2ymu_A          374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL  452 (577)
T ss_dssp             TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEE
Confidence            46778889999999999999999999999999999999995 567777777776654                7899999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      ||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+..               |...|++++
T Consensus       453 w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~---------------h~~~v~~l~  515 (577)
T 2ymu_A          453 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG---------------HSSSVRGVA  515 (577)
T ss_dssp             EET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC---------------CSSCEEEEE
T ss_pred             EEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC---------------CCCCEEEEE
Confidence            996 46778889999999999999999999999999999999995 5777777776               899999999


Q ss_pred             eCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          147 WPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      |+|++++|++++.|+.+             .+|...|++++|+|||++|++++.|++|++||
T Consensus       516 ~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          516 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999988             67999999999999999999999999999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-32  Score=200.09  Aligned_cols=180  Identities=15%  Similarity=0.208  Sum_probs=150.1

Q ss_pred             CceeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------------cC
Q 043942            4 GDWASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------------ED   61 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------------~~   61 (216)
                      ++++.++.+|.++|++++|+|  ++++|++|+.|++|++||+++++  .+..+..|...+                  .|
T Consensus        43 ~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d  122 (297)
T 2pm7_B           43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD  122 (297)
T ss_dssp             BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence            467789999999999999986  48999999999999999998763  344444443322                  78


Q ss_pred             cEEEEEECCCcc--eeeeeeccCCCeeEEEEcCC-------------CcEEEEecCCCeEEEEeCCCCc----eeEEeec
Q 043942           62 STVWMWNADRGA--YLNMFSGHGSGLTCGDFTTD-------------GKTICTGSDNATLSIWNPKGGE----NFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~-------------~~~l~t~~~d~~i~~wd~~~~~----~~~~~~~  122 (216)
                      ++|++||++++.  ....+.+|...|.+++|+|+             +++|++|+.|+.|++||+++++    ....+..
T Consensus       123 ~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~  202 (297)
T 2pm7_B          123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  202 (297)
T ss_dssp             SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC
Confidence            999999998763  24567789999999999997             5799999999999999998765    3344544


Q ss_pred             ccccccccceEEEeeeecCeEEEEeCCCC---cEEEEecccCeE-------------------EeeeCCEEEEEEecCCC
Q 043942          123 SSLEFSLNYWMICTSLYDGVTCLSWPGTS---KYLVTGCVDGKV-------------------DGHIDAIQSLSVSAIRE  180 (216)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~i-------------------~~~~~~i~~~~~~~~~~  180 (216)
                                     |...|.+++|+|++   .+|++++.|+.+                   ..|...|.+++|+|+++
T Consensus       203 ---------------H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  267 (297)
T 2pm7_B          203 ---------------HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  267 (297)
T ss_dssp             ---------------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred             ---------------CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC
Confidence                           89999999999984   899999999987                   13456899999999999


Q ss_pred             eEEEEeCCCcEEEEEccc
Q 043942          181 SLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       181 ~l~s~~~d~~v~vw~~~~  198 (216)
                      +|++++.|+.|++|+...
T Consensus       268 ~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          268 VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CEEEEETTSCEEEEEECT
T ss_pred             EEEEEcCCCcEEEEEECC
Confidence            999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.7e-32  Score=201.44  Aligned_cols=179  Identities=16%  Similarity=0.211  Sum_probs=144.4

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~   67 (216)
                      +.+...+.+|...|.+++|+|++.++++++.|++|++||+.+++....+.+|...+                .|++|++|
T Consensus        66 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w  145 (343)
T 2xzm_R           66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW  145 (343)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred             ccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence            45667889999999999999999999999999999999999999999998887765                79999999


Q ss_pred             ECCCcceeee--eeccCCCeeEEEEcCCC----------cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEE
Q 043942           68 NADRGAYLNM--FSGHGSGLTCGDFTTDG----------KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMIC  135 (216)
Q Consensus        68 d~~~~~~~~~--~~~~~~~v~~~~~~~~~----------~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  135 (216)
                      |+........  ..+|...|.+++|+|++          .++++++.|+.|++||. +.+....+..             
T Consensus       146 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~-------------  211 (343)
T 2xzm_R          146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA-------------  211 (343)
T ss_dssp             ESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEEC-------------
T ss_pred             eccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcC-------------
Confidence            9984333222  23688899999999987          78999999999999994 4555555555             


Q ss_pred             eeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          136 TSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       136 ~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                        |...|.+++|+|++++|++++.|+.+              ..+...|.+++|+|++++++++ .|+.|++|++.+.
T Consensus       212 --h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~  286 (343)
T 2xzm_R          212 --HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ  286 (343)
T ss_dssp             --CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred             --ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence              77888888888888888888888877              2244567888888887766544 4677888877653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.2e-32  Score=200.82  Aligned_cols=197  Identities=17%  Similarity=0.257  Sum_probs=157.9

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC----ceEEEEeCCCCcc------------------cCcEE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR----NLQCTVEGPRGGI------------------EDSTV   64 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~~------------------~~~~v   64 (216)
                      ...+.+|.+.|++++|+|++++|++++.||.|++||+.++    +....+..|...+                  .|+.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            3467899999999999999999999999999999999876    3555555555433                  78999


Q ss_pred             EEEECCCc---------ceeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCceeEEeecc----------
Q 043942           65 WMWNADRG---------AYLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGENFHAIRRS----------  123 (216)
Q Consensus        65 ~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~----------  123 (216)
                      ++||++++         +.+..+..|...|.+++|+|+  ++++++++.|+.|++||+++++.+..+...          
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999876         557788889999999999999  999999999999999999877643222110          


Q ss_pred             --------cccccc---------------------------cceEEEeeeecCeEEEEeCCCC----cEEEEecccCeE-
Q 043942          124 --------SLEFSL---------------------------NYWMICTSLYDGVTCLSWPGTS----KYLVTGCVDGKV-  163 (216)
Q Consensus       124 --------~~~~~~---------------------------~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~i-  163 (216)
                              ...+.+                           .......+|...|.+++|+|++    ++|++++.||.+ 
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence                    000000                           0122233578899999999998    899999999987 


Q ss_pred             -----------------------------------------------------------EeeeCCEEEEEEecCCCeEEE
Q 043942          164 -----------------------------------------------------------DGHIDAIQSLSVSAIRESLVS  184 (216)
Q Consensus       164 -----------------------------------------------------------~~~~~~i~~~~~~~~~~~l~s  184 (216)
                                                                                 .+|...|++++|+|++++|++
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence                                                                       126679999999999999999


Q ss_pred             EeCCCcEEEEEccccccee
Q 043942          185 VSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       185 ~~~d~~v~vw~~~~~~~~~  203 (216)
                      ++.||.|++|++.+++...
T Consensus       324 ~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          324 AGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             EETTSCEEEEEECTTSCEE
T ss_pred             ecCCCcEEEEecCcCcchh
Confidence            9999999999999876544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-32  Score=203.90  Aligned_cols=182  Identities=22%  Similarity=0.315  Sum_probs=156.8

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC--CCceEEEEeCCCCcc------------------cCcE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS--SRNLQCTVEGPRGGI------------------EDST   63 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~~------------------~~~~   63 (216)
                      |+++..+++|.+.|.+++|+|++++|++++.|+.|++||+.  +++....+..|...+                  .|+.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            56788999999999999999999999999999999999998  556666676665544                  7899


Q ss_pred             EEEEECCCcc--eeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEee
Q 043942           64 VWMWNADRGA--YLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        64 v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      |++||+++++  .+..+..|...|.+++|+|+  ++++++++.|+.|++||++++..  ...+..               
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---------------  145 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---------------  145 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC---------------
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC---------------
Confidence            9999999886  77778889999999999999  99999999999999999998743  233333               


Q ss_pred             eecCeEEEEeCC-------------CCcEEEEecccCeE------------------EeeeCCEEEEEEecC---CCeEE
Q 043942          138 LYDGVTCLSWPG-------------TSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAI---RESLV  183 (216)
Q Consensus       138 ~~~~v~~~~~~~-------------~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~---~~~l~  183 (216)
                      |...|.+++|+|             ++.++++++.|+.+                  .+|...|.+++|+|+   +++|+
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~  225 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA  225 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence            888999999999             69999999999987                  347889999999999   89999


Q ss_pred             EEeCCCcEEEEEccccc
Q 043942          184 SVSVDGTARVFEIAEFR  200 (216)
Q Consensus       184 s~~~d~~v~vw~~~~~~  200 (216)
                      +++.||.|++||+.+++
T Consensus       226 s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          226 SVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             EEETTSCEEEEEESSTT
T ss_pred             EEeCCCEEEEEeCCCCC
Confidence            99999999999998864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.8e-31  Score=203.78  Aligned_cols=185  Identities=23%  Similarity=0.363  Sum_probs=155.0

Q ss_pred             CCCceeEEee--ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------
Q 043942            2 NQGDWASEIL--GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------   59 (216)
Q Consensus         2 ~~g~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------   59 (216)
                      ++|+++..+.  +|...|++++|+|+|++|++|+.|+.|++||+.+++.+..+.+|...+                    
T Consensus       133 ~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~  212 (420)
T 4gga_A          133 SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH  212 (420)
T ss_dssp             TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             CCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCcee
Confidence            5777777665  577889999999999999999999999999999999988888776544                    


Q ss_pred             -------------------------------------cCcEEEEEECCCcc----eeeeeeccCCCeeEEEEcCCCc-EE
Q 043942           60 -------------------------------------EDSTVWMWNADRGA----YLNMFSGHGSGLTCGDFTTDGK-TI   97 (216)
Q Consensus        60 -------------------------------------~~~~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l   97 (216)
                                                           .|+.+++||..+++    .+.....|...|.+++|+|++. .+
T Consensus       213 ~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l  292 (420)
T 4gga_A          213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL  292 (420)
T ss_dssp             EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred             EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE
Confidence                                                 67888888887654    3455667889999999999654 45


Q ss_pred             EE--ecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec--ccCeE----------
Q 043942           98 CT--GSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC--VDGKV----------  163 (216)
Q Consensus        98 ~t--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~i----------  163 (216)
                      ++  |+.|+.|++||+.+++....+.                ....+.++.|+|+++.+++++  .|+.+          
T Consensus       293 a~~~gs~D~~I~iwd~~t~~~~~~~~----------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~  356 (420)
T 4gga_A          293 ATGGGTSDRHIRIWNVCSGACLSAVD----------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK  356 (420)
T ss_dssp             EEEECTTTCEEEEEETTTTEEEEEEE----------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred             EEEeecCCCEEEEEeCCccccceeec----------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence            44  5689999999999999888776                556889999999999888754  67776          


Q ss_pred             ----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          164 ----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       164 ----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                          .+|...|++++|+|+|++|+||+.|++|++||+.+..+.
T Consensus       357 v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence                679999999999999999999999999999999765443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.5e-31  Score=199.19  Aligned_cols=186  Identities=15%  Similarity=0.197  Sum_probs=160.9

Q ss_pred             CCceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEe--CCCCcc-----------------cCc
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVE--GPRGGI-----------------EDS   62 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~~-----------------~~~   62 (216)
                      +.++...+.+|.+.|++++|+|++ ++|++|+.|+.|++||+.+++....+.  .|...+                 .|+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            456778899999999999999999 999999999999999999888777765  355443                 789


Q ss_pred             EEEEEECCCcceeeeeecc---CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942           63 TVWMWNADRGAYLNMFSGH---GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      .|++||+++ ..+..+..+   ...|.+++|+|+++++++++.|+.|++||++ ++.+..+..               |.
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~---------------h~  204 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKL---------------HK  204 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEEC---------------SS
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEecc---------------CC
Confidence            999999996 444555443   4789999999999999999999999999994 677777766               88


Q ss_pred             cCeEEEEeCCCCc-EEEEecccCeE-----------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEccccc
Q 043942          140 DGVTCLSWPGTSK-YLVTGCVDGKV-----------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       140 ~~v~~~~~~~~~~-~l~~~~~~~~i-----------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ..|.+++|+|+++ ++++++.|+.+                 ..|...|.+++|+| ++++|++++.|+.|++||+++++
T Consensus       205 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          205 AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence            9999999999999 89999999987                 46788999999999 99999999999999999999877


Q ss_pred             ceeec
Q 043942          201 RATKA  205 (216)
Q Consensus       201 ~~~~~  205 (216)
                      ....+
T Consensus       285 ~~~~~  289 (383)
T 3ei3_B          285 KPDQI  289 (383)
T ss_dssp             SCSEE
T ss_pred             ccccc
Confidence            65443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.3e-31  Score=214.30  Aligned_cols=190  Identities=19%  Similarity=0.310  Sum_probs=161.3

Q ss_pred             eeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCC-----ceEEEEeCCCCcc----------------cCcE
Q 043942            6 WASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSR-----NLQCTVEGPRGGI----------------EDST   63 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~----------------~~~~   63 (216)
                      ....+++|.+.|++++|+|++ ++|+||+.|++|++||+.+.     .....+.+|...+                .|++
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            445789999999999999864 79999999999999999764     3455677777655                7999


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      |++||+.++..+..+.+|...|.+++|+|++++|++++.|++|++||+........... .           .+|...|.
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~-----------~~h~~~v~  521 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG-G-----------EGHRDWVS  521 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-T-----------TSCSSCEE
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC-C-----------CCCCCcEE
Confidence            99999999999999999999999999999999999999999999999875433322211 0           02778899


Q ss_pred             EEEeCCCC--cEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          144 CLSWPGTS--KYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       144 ~~~~~~~~--~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      +++|+|++  ..+++++.|+.+              .+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~  601 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA  601 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence            99999987  589999999988              56889999999999999999999999999999998887665443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.4e-32  Score=203.54  Aligned_cols=176  Identities=19%  Similarity=0.320  Sum_probs=143.7

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------------cCcEEEEE
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------------EDSTVWMW   67 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------------~~~~v~i~   67 (216)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|++||+.+++  .+..+.+|...+                  .|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3467899999999999999999999999999999998764  456676665433                  78999999


Q ss_pred             ECCCc--ceeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCcee---EEeecccccccccceEEEeeeec
Q 043942           68 NADRG--AYLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGENF---HAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        68 d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      |++++  .....+.+|...|.+++|+|+  +.+|++|+.|+.|++||++.+...   ..+..               |..
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~---------------h~~  151 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA---------------HTI  151 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS---------------SSS
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc---------------ccC
Confidence            99987  456678889999999999997  789999999999999999876432   12222               778


Q ss_pred             CeEEEEeCCC-----------------CcEEEEecccCeE-----------------EeeeCCEEEEEEecCC----CeE
Q 043942          141 GVTCLSWPGT-----------------SKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIR----ESL  182 (216)
Q Consensus       141 ~v~~~~~~~~-----------------~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~----~~l  182 (216)
                      .+.+++|+|+                 +.+|++++.|+.+                 .+|..+|.+++|+|++    ++|
T Consensus       152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l  231 (316)
T 3bg1_A          152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI  231 (316)
T ss_dssp             CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred             CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence            8899999987                 4689999999876                 3578899999999987    789


Q ss_pred             EEEeCCCcEEEEEccc
Q 043942          183 VSVSVDGTARVFEIAE  198 (216)
Q Consensus       183 ~s~~~d~~v~vw~~~~  198 (216)
                      ++++.|++|++|++.+
T Consensus       232 as~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          232 ASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             EEEETTCEEEEEECSS
T ss_pred             EEEcCCCeEEEEEccC
Confidence            9999999999999876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-30  Score=193.65  Aligned_cols=177  Identities=19%  Similarity=0.322  Sum_probs=159.1

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcEEEEEECCCcc
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDSTVWMWNADRGA   73 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~v~i~d~~~~~   73 (216)
                      +|...|.+++|+|++++|++++.|+.|++||+.+++  ....+..+...+                .++.|++||+++++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            789999999999999999999999999999999887  555566555443                78999999999999


Q ss_pred             eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942           74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus        74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                      .+..+..|...+.+++|+|+++++++++.|+.|++||+++++....+.                +...+.+++|+|++++
T Consensus       175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----------------~~~~v~~~~~s~~~~~  238 (337)
T 1gxr_A          175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----------------FTSQIFSLGYCPTGEW  238 (337)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----------------CSSCEEEEEECTTSSE
T ss_pred             eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----------------CCCceEEEEECCCCCE
Confidence            999999999999999999999999999999999999999998877765                6778999999999999


Q ss_pred             EEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          154 LVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       154 l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      +++++.++.+             ..|...|.+++|+|++++|++++.||.|++|++.+++....
T Consensus       239 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~  302 (337)
T 1gxr_A          239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             EEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence            9999999987             56788999999999999999999999999999998776543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-31  Score=201.90  Aligned_cols=188  Identities=12%  Similarity=0.167  Sum_probs=146.9

Q ss_pred             eeccccceEEEEEccCCCEEEEEcC------CCcEEEEECCCCceE----EEEeCCCCcc---------------cCcEE
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGF------HGLVQNRDTSSRNLQ----CTVEGPRGGI---------------EDSTV   64 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~------d~~v~vwd~~~~~~~----~~~~~~~~~~---------------~~~~v   64 (216)
                      ..+|...|++++|+|||++|++++.      |+.|++|+..++...    .....+...+               .+++|
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v  117 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV  117 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence            4569999999999999999999997      778999998765422    2222233222               88999


Q ss_pred             EEEECCCcceee----eeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           65 WMWNADRGAYLN----MFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        65 ~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      ++||+.+++...    ...+|...|++++|+|++++|++|+.|+.|++||+++++.+..+..               |..
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~---------------h~~  182 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA---------------HSS  182 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC---------------CSS
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---------------CCC
Confidence            999999876543    2347999999999999999999999999999999999999888887               899


Q ss_pred             CeEEEEeCCCCc-EEEEecccCeE----------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEcccccce
Q 043942          141 GVTCLSWPGTSK-YLVTGCVDGKV----------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       141 ~v~~~~~~~~~~-~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      .|++++|+|++. ++++++.|+.+                ..+...+.+++|+|++ .+|++++.|+.|++||+++++..
T Consensus       183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~  262 (357)
T 4g56_B          183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA  262 (357)
T ss_dssp             CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred             CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence            999999999875 78899999987                2456679999999975 67889999999999999998887


Q ss_pred             eecCCcceeE
Q 043942          203 TKAPSYSFKL  212 (216)
Q Consensus       203 ~~~~~~~~~~  212 (216)
                      ..+..+...+
T Consensus       263 ~~~~~~~~~v  272 (357)
T 4g56_B          263 QTSAVHSQNI  272 (357)
T ss_dssp             EEECCCSSCE
T ss_pred             EEEeccceeE
Confidence            7766655443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-30  Score=207.07  Aligned_cols=190  Identities=25%  Similarity=0.403  Sum_probs=166.1

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~   67 (216)
                      ++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...+                .|+.|++|
T Consensus       334 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~  412 (577)
T 2ymu_A          334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  412 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE
Confidence            4566788899999999999999999999999999999995 567777777766654                78999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      |. +++.+..+.+|...|++++|+|++++|++++.|+.|++||.. ++.+..+..               |...|.+++|
T Consensus       413 ~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~---------------~~~~v~~~~~  475 (577)
T 2ymu_A          413 NR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTG---------------HSSSVRGVAF  475 (577)
T ss_dssp             CT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEEC---------------CSSCEEEEEE
T ss_pred             eC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcC---------------CCCCEEEEEE
Confidence            95 567788899999999999999999999999999999999964 666666665               8899999999


Q ss_pred             CCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeE
Q 043942          148 PGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKL  212 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~  212 (216)
                      +|++++|++++.|+.+             .+|...|++++|+|++++|++++.|+.|++||. +++.+..+..|+..+
T Consensus       476 spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v  552 (577)
T 2ymu_A          476 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  552 (577)
T ss_dssp             CTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCE
T ss_pred             cCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCE
Confidence            9999999999999987             678899999999999999999999999999996 566666666665444

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-30  Score=194.68  Aligned_cols=179  Identities=21%  Similarity=0.320  Sum_probs=147.3

Q ss_pred             eeEEe-ec-cccceEEEEEccCCCEEEEEcCCCcEEEEECCC-------CceEEEEeCCCCcc----------------c
Q 043942            6 WASEI-LG-HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-------RNLQCTVEGPRGGI----------------E   60 (216)
Q Consensus         6 ~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-------~~~~~~~~~~~~~~----------------~   60 (216)
                      .+..+ .+ |.+.|.+++|+|++++|++++.|++|++||+..       .+....+.+|...+                .
T Consensus        48 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~  127 (330)
T 2hes_X           48 LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR  127 (330)
T ss_dssp             EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred             EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            44555 34 999999999999999999999999999999853       34556666666554                7


Q ss_pred             CcEEEEEECCC----cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC--ceeEEeecccccccccceEE
Q 043942           61 DSTVWMWNADR----GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG--ENFHAIRRSSLEFSLNYWMI  134 (216)
Q Consensus        61 ~~~v~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~  134 (216)
                      |++|++||++.    .+.+..+.+|...|.+++|+|++++|++++.|++|++||..++  +.+..+..            
T Consensus       128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~------------  195 (330)
T 2hes_X          128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG------------  195 (330)
T ss_dssp             TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC------------
T ss_pred             CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC------------
Confidence            99999999953    2456778899999999999999999999999999999998866  45556655            


Q ss_pred             EeeeecCeEEEEeCCC--CcEEEEecccCeE------E-----------------eeeCCEEEEEEecCCCeEEEEeCCC
Q 043942          135 CTSLYDGVTCLSWPGT--SKYLVTGCVDGKV------D-----------------GHIDAIQSLSVSAIRESLVSVSVDG  189 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~~--~~~l~~~~~~~~i------~-----------------~~~~~i~~~~~~~~~~~l~s~~~d~  189 (216)
                         |...|.+++|+|+  +.++++++.|+.+      .                 .|...|.+++|++++ +|++++.||
T Consensus       196 ---h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg  271 (330)
T 2hes_X          196 ---HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG  271 (330)
T ss_dssp             ---CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred             ---CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence               8999999999998  6789999999987      1                 177899999999765 899999999


Q ss_pred             cEEEEEccccc
Q 043942          190 TARVFEIAEFR  200 (216)
Q Consensus       190 ~v~vw~~~~~~  200 (216)
                      .|++|+..+++
T Consensus       272 ~v~iw~~~~~~  282 (330)
T 2hes_X          272 VLAVYEEVDGE  282 (330)
T ss_dssp             CEEEEEEETTE
T ss_pred             EEEEEEcCCCc
Confidence            99999987653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.6e-31  Score=206.05  Aligned_cols=185  Identities=16%  Similarity=0.179  Sum_probs=150.8

Q ss_pred             ceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEE--eCCCCcc-----------------cCcEE
Q 043942            5 DWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTV--EGPRGGI-----------------EDSTV   64 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~~-----------------~~~~v   64 (216)
                      +......+|...|+||+|+| ++++||+|+.||.|++||+.+++....+  .+|...+                 .|++|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            34556778999999999999 5679999999999999999877544433  3455444                 78999


Q ss_pred             EEEECCCcceeeeeec--cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           65 WMWNADRGAYLNMFSG--HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      ++||++++........  +...+.+++|+|++++|++|+.|+.|++||++ ++.+..+..               |...|
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~---------------h~~~v  253 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRM---------------HKKKV  253 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBC---------------CSSCE
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEec---------------ccceE
Confidence            9999987654333332  33467899999999999999999999999987 444455554               88999


Q ss_pred             EEEEeCCCCc-EEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          143 TCLSWPGTSK-YLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       143 ~~~~~~~~~~-~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      .+++|+|++. ++++++.|+.+                 .+|...|.+++|+|+|++|++++.|+.|++||+.+++....
T Consensus       254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence            9999999886 67889999977                 46888999999999999999999999999999998776554


Q ss_pred             c
Q 043942          205 A  205 (216)
Q Consensus       205 ~  205 (216)
                      +
T Consensus       334 ~  334 (435)
T 4e54_B          334 L  334 (435)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-30  Score=193.90  Aligned_cols=186  Identities=13%  Similarity=0.153  Sum_probs=162.4

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-----------------------
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-----------------------   57 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----------------------   57 (216)
                      +.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+.....                       
T Consensus        61 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~  140 (369)
T 3zwl_B           61 SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKN  140 (369)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred             CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCC
Confidence            357888999999999999999999999999999999999999998876655531110                       


Q ss_pred             ------------------------------------cc----------------cCcEEEEEECCC-cceeeeeeccCCC
Q 043942           58 ------------------------------------GI----------------EDSTVWMWNADR-GAYLNMFSGHGSG   84 (216)
Q Consensus        58 ------------------------------------~~----------------~~~~v~i~d~~~-~~~~~~~~~~~~~   84 (216)
                                                          .+                .++.|++||+++ +..+..+..|...
T Consensus       141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  220 (369)
T 3zwl_B          141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS  220 (369)
T ss_dssp             CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC
T ss_pred             CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc
Confidence                                                00                678899999998 6788888899999


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC---
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG---  161 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---  161 (216)
                      |.+++|+|++++|++++.|+.|++||+++++....+.                +...+..++|+|+++++++++.++   
T Consensus       221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~  284 (369)
T 3zwl_B          221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----------------TDCPLNTAVITPLKEFIILGGGQEAKD  284 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------------CSSCEEEEEECSSSSEEEEEECCC---
T ss_pred             eeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----------------CCCCceeEEecCCCceEEEeecCCCce
Confidence            9999999999999999999999999999998888776                667899999999999999998877   


Q ss_pred             -----------eE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          162 -----------KV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       162 -----------~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                                 .+              .+|...|.+++|+|++++|++++.||.|++|++..+...
T Consensus       285 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          285 VTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             ----------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             EEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence                       22              568899999999999999999999999999999875543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.1e-30  Score=214.81  Aligned_cols=205  Identities=15%  Similarity=0.227  Sum_probs=170.9

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~   67 (216)
                      -+..+.+.+|.+.|.+++|+|++++|++++.||.|++||+.+++....+..|...+                .++.|++|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            35678899999999999999999999999999999999999999999999887765                78999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceeEEeeccc-----ccccc-cceEEE-----
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG-ENFHAIRRSS-----LEFSL-NYWMIC-----  135 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~-----~~~~~-~~~~~~-----  135 (216)
                      |+.+++.+..+.+|...|++++|+|++++|++++.|+.|++||+.++ .....+....     ..+.+ ....+.     
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999876 4444443211     11222 111111     


Q ss_pred             ------------------eeeecCeEEEEeCC--CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCe
Q 043942          136 ------------------TSLYDGVTCLSWPG--TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRES  181 (216)
Q Consensus       136 ------------------~~~~~~v~~~~~~~--~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~  181 (216)
                                        ..+...+..++|+|  ++.++++++.||.+              ..|...|.+++|+|++++
T Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  242 (814)
T 3mkq_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI  242 (814)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred             CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence                              11336788999998  89999999999987              467889999999999999


Q ss_pred             EEEEeCCCcEEEEEcccccceeecCCc
Q 043942          182 LVSVSVDGTARVFEIAEFRRATKAPSY  208 (216)
Q Consensus       182 l~s~~~d~~v~vw~~~~~~~~~~~~~~  208 (216)
                      |++++.||.|++||+.+++....+..+
T Consensus       243 l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          243 IISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             EEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            999999999999999987776655444

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-30  Score=199.31  Aligned_cols=182  Identities=17%  Similarity=0.271  Sum_probs=166.1

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc---------------c--------
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG---------------I--------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---------------~--------   59 (216)
                      +++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+..+...               +        
T Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (425)
T 1r5m_A          138 TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD  217 (425)
T ss_dssp             TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET
T ss_pred             CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC
Confidence            56788889999999999999999999999999999999999999988888766543               2        


Q ss_pred             -------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccce
Q 043942           60 -------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYW  132 (216)
Q Consensus        60 -------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  132 (216)
                             .++.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+..          
T Consensus       218 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----------  287 (425)
T 1r5m_A          218 DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG----------  287 (425)
T ss_dssp             TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC----------
T ss_pred             CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC----------
Confidence                   789999999999999989999999999999999999999999999999999999888888876          


Q ss_pred             EEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          133 MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                           +...+.+++|+|++ ++++++.|+.+              ..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus       288 -----~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          288 -----HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             -----CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             -----CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence                 88999999999999 99999999988              56678999999999999999999999999999998


Q ss_pred             cc
Q 043942          199 FR  200 (216)
Q Consensus       199 ~~  200 (216)
                      .+
T Consensus       362 ~~  363 (425)
T 1r5m_A          362 LN  363 (425)
T ss_dssp             HH
T ss_pred             Cc
Confidence            77

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2e-30  Score=207.63  Aligned_cols=188  Identities=22%  Similarity=0.301  Sum_probs=161.5

Q ss_pred             CCceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVW   65 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~   65 (216)
                      +++...++.+|...|++++|+|++. .|++++.|++|++||..+++....+.+|...+                .|++|+
T Consensus       136 ~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~  215 (611)
T 1nr0_A          136 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV  215 (611)
T ss_dssp             TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence            3556677889999999999999986 69999999999999999998888888887755                899999


Q ss_pred             EEECCCcceeeeee-------ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           66 MWNADRGAYLNMFS-------GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        66 i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      +||+.+++.+..+.       +|.+.|.+++|+|++++|++++.|++|++||+++++....+.....            +
T Consensus       216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~------------~  283 (611)
T 1nr0_A          216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR------------I  283 (611)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS------------G
T ss_pred             EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC------------c
Confidence            99999998888774       7999999999999999999999999999999999988877754210            3


Q ss_pred             ecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      ......+.|  ++..+++++.|+.+              .+|...|.+++|+|+|++|++++.|+.|++||+.+++....
T Consensus       284 ~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          284 EDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             GGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             cceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence            344556666  57788889888876              47889999999999999999999999999999988765443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-30  Score=193.04  Aligned_cols=195  Identities=18%  Similarity=0.304  Sum_probs=164.0

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~   69 (216)
                      ....+.+|.+.|++++|+|++++|++++.|+.|++||+.+++....+..|...+                .|+.|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            345688999999999999999999999999999999999999999998887765                7999999999


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceeEEeecccccccccceEEEeeeec--Ce
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD--GV  142 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v  142 (216)
                      ++++.+..+. +...+.+++|+|+++++++++.+     +.|++||+..+.....+.....    ........+..  .+
T Consensus       104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE----EPIHKIITHEGLDAA  178 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS----SCSEEEECCTTCCCE
T ss_pred             CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc----ceeeeccCCcCccce
Confidence            9999988888 88899999999999999999998     9999999987654322221000    00011112344  89


Q ss_pred             EEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      .+++|+|+++++++++.+|.+               ..|...|.+++|+|++++|++++.|+.|++||+.+++....+
T Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence            999999999999999999987               567889999999999999999999999999999987766544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.7e-31  Score=196.68  Aligned_cols=178  Identities=15%  Similarity=0.223  Sum_probs=148.8

Q ss_pred             eeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------------cCcE
Q 043942            6 WASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------------EDST   63 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------------~~~~   63 (216)
                      ++.++++|.++|++++|+|  ++++|++|+.|++|++||+++++  ....+..|...+                  .|++
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            4678899999999999986  48999999999999999998873  455555554433                  6899


Q ss_pred             EEEEECCCcce---eeeeeccCCCeeEEEEcCC-----------------CcEEEEecCCCeEEEEeCCCCc---eeEEe
Q 043942           64 VWMWNADRGAY---LNMFSGHGSGLTCGDFTTD-----------------GKTICTGSDNATLSIWNPKGGE---NFHAI  120 (216)
Q Consensus        64 v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~-----------------~~~l~t~~~d~~i~~wd~~~~~---~~~~~  120 (216)
                      |++||++++..   ...+.+|...+.+++|+|+                 +++|++|+.|+.|++||++.+.   ....+
T Consensus       129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l  208 (316)
T 3bg1_A          129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL  208 (316)
T ss_dssp             EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred             EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence            99999987532   3556789999999999997                 4789999999999999997552   34444


Q ss_pred             ecccccccccceEEEeeeecCeEEEEeCCCC----cEEEEecccCeE------------------EeeeCCEEEEEEecC
Q 043942          121 RRSSLEFSLNYWMICTSLYDGVTCLSWPGTS----KYLVTGCVDGKV------------------DGHIDAIQSLSVSAI  178 (216)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~  178 (216)
                      ..               |...|.+++|+|++    .+|++++.|+.+                  ..|...|.+++|+|+
T Consensus       209 ~~---------------h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  273 (316)
T 3bg1_A          209 EA---------------HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT  273 (316)
T ss_dssp             BC---------------CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT
T ss_pred             cc---------------CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC
Confidence            44               88999999999986    789999999987                  245678999999999


Q ss_pred             CCeEEEEeCCCcEEEEEccc
Q 043942          179 RESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       179 ~~~l~s~~~d~~v~vw~~~~  198 (216)
                      +++|++++.|+.|++|+...
T Consensus       274 g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          274 ANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             TCCEEEEESSSCEEEEEECT
T ss_pred             CCEEEEEcCCCeEEEEEECC
Confidence            99999999999999999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-32  Score=206.80  Aligned_cols=187  Identities=11%  Similarity=0.131  Sum_probs=151.0

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--ceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--NLQCTVEGPRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~----------------~~~~v~i~d~~   70 (216)
                      .++.|.++|++++|+|++++|++++.|+.|++||+.++  +....+..|...+                .|++|++||++
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            44557789999999999999999999999999999988  6666777776655                78999999999


Q ss_pred             Ccc---eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce---eEEeecccccccccceEEEeeeecCeEE
Q 043942           71 RGA---YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN---FHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        71 ~~~---~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      ++.   ....+.+|...|.+++|+|++++|++++.|+.|++||+++++.   ...+..              .|...|.+
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------~h~~~v~~  151 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR--------------PLRSTILS  151 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS--------------SCCSCEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec--------------ccCCCeEE
Confidence            876   6677788999999999999999999999999999999998763   444432              17889999


Q ss_pred             EEeCCCCcEEEEecccCeE----E---------------------------eeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942          145 LSWPGTSKYLVTGCVDGKV----D---------------------------GHIDAIQSLSVSAIRESLVSVSVDGTARV  193 (216)
Q Consensus       145 ~~~~~~~~~l~~~~~~~~i----~---------------------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~v  193 (216)
                      ++|+|+++++++++.|+.+    .                           .|...|.+++|+|++++|++++.|+.|++
T Consensus       152 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i  231 (377)
T 3dwl_C          152 LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTI  231 (377)
T ss_dssp             EEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence            9999999999999999987    1                           56778999999999999999999999999


Q ss_pred             EEcccccc----eeecCCcc
Q 043942          194 FEIAEFRR----ATKAPSYS  209 (216)
Q Consensus       194 w~~~~~~~----~~~~~~~~  209 (216)
                      ||+.+++.    ...+..+.
T Consensus       232 wd~~~~~~~~~~~~~~~~~~  251 (377)
T 3dwl_C          232 AYPSAPEQPPRALITVKLSQ  251 (377)
T ss_dssp             CEECSTTSCEEECCCEECSS
T ss_pred             EECCCCCCcceeeEeecCCC
Confidence            99998876    44444444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=7.4e-31  Score=200.22  Aligned_cols=181  Identities=19%  Similarity=0.248  Sum_probs=158.2

Q ss_pred             eeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCC-------ceEEEEeCCCCcc-----------------c
Q 043942            6 WASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSR-------NLQCTVEGPRGGI-----------------E   60 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~~-----------------~   60 (216)
                      .+..+.+|.+.|.+++|+| ++++|++|+.|+.|++||+.++       +....+..|...+                 .
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            3456778999999999999 8999999999999999999987       5667777766544                 7


Q ss_pred             CcEEEEEECCCcceeeee--eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEe-ecccccccccceEEEee
Q 043942           61 DSTVWMWNADRGAYLNMF--SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI-RRSSLEFSLNYWMICTS  137 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~  137 (216)
                      |+.|++||+++++.+..+  .+|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..               
T Consensus       153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------------  217 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP---------------  217 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS---------------
T ss_pred             CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC---------------
Confidence            899999999999999888  789999999999999999999999999999999999888877 44               


Q ss_pred             eecC-eEEEEeCCCCcEEEEe---cccCeE----------------EeeeCCEEEEEEecCCCeEEE-EeCCCcEEEEEc
Q 043942          138 LYDG-VTCLSWPGTSKYLVTG---CVDGKV----------------DGHIDAIQSLSVSAIRESLVS-VSVDGTARVFEI  196 (216)
Q Consensus       138 ~~~~-v~~~~~~~~~~~l~~~---~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s-~~~d~~v~vw~~  196 (216)
                      |... +.++.|+|++.+++++   +.++.+                ..|...+..++|+|++++|++ ++.|+.|++|++
T Consensus       218 ~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~  297 (402)
T 2aq5_A          218 HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI  297 (402)
T ss_dssp             SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred             CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence            5554 8999999999999999   788877                245678999999999999875 557999999999


Q ss_pred             ccccc
Q 043942          197 AEFRR  201 (216)
Q Consensus       197 ~~~~~  201 (216)
                      .+++.
T Consensus       298 ~~~~~  302 (402)
T 2aq5_A          298 TSEAP  302 (402)
T ss_dssp             CSSTT
T ss_pred             cCCCc
Confidence            98774

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.1e-31  Score=199.49  Aligned_cols=202  Identities=15%  Similarity=0.187  Sum_probs=153.1

Q ss_pred             CCceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEe-------------CCCCcc---------
Q 043942            3 QGDWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVE-------------GPRGGI---------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-------------~~~~~~---------   59 (216)
                      .++....+++|.+.|.+++|+| ++++|++++.||.|++||+.+++....+.             .|...+         
T Consensus        32 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  111 (408)
T 4a11_B           32 LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD  111 (408)
T ss_dssp             ECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred             cCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence            4566778889999999999999 99999999999999999998764433322             122211         


Q ss_pred             ----------------------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942           60 ----------------------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTC   87 (216)
Q Consensus        60 ----------------------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~   87 (216)
                                                                          .++.|++||+++++.+..+.+|...|.+
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          112 TGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             TTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred             CcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence                                                                4567777777777777778889999999


Q ss_pred             EEEcCCCc-EEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942           88 GDFTTDGK-TICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--  163 (216)
Q Consensus        88 ~~~~~~~~-~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--  163 (216)
                      ++|+|+++ .+++++.|+.|++||++++. ....+.................|...|.+++|+|+++++++++.|+.+  
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            99999998 58899999999999999776 344442211100000001112278899999999999999999999877  


Q ss_pred             -----------------------------------------------------------EeeeCCEEEEEEecCCCeEEE
Q 043942          164 -----------------------------------------------------------DGHIDAIQSLSVSAIRESLVS  184 (216)
Q Consensus       164 -----------------------------------------------------------~~~~~~i~~~~~~~~~~~l~s  184 (216)
                                                                                 .+|...|.+++|+|++++|++
T Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  351 (408)
T 4a11_B          272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS  351 (408)
T ss_dssp             EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence                                                                       237789999999999999999


Q ss_pred             EeCCCcEEEEEcccccceee
Q 043942          185 VSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       185 ~~~d~~v~vw~~~~~~~~~~  204 (216)
                      ++.||.|++|++.+.+.+..
T Consensus       352 ~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          352 GSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EETTSCEEEEEECC------
T ss_pred             ECCCCeEEEEeCCCCCccCC
Confidence            99999999999998876654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-30  Score=190.14  Aligned_cols=184  Identities=22%  Similarity=0.349  Sum_probs=154.6

Q ss_pred             CCCCceeEEee--ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------
Q 043942            1 INQGDWASEIL--GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------   59 (216)
Q Consensus         1 l~~g~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------   59 (216)
                      +++|++++.++  +|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|....                   
T Consensus        52 ~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~  131 (318)
T 4ggc_A           52 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI  131 (318)
T ss_dssp             TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             CCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCce
Confidence            36788887775  577889999999999999999999999999999999988888776543                   


Q ss_pred             --------------------------------------cCcEEEEEECCCcce----eeeeeccCCCeeEEEEcCCCcEE
Q 043942           60 --------------------------------------EDSTVWMWNADRGAY----LNMFSGHGSGLTCGDFTTDGKTI   97 (216)
Q Consensus        60 --------------------------------------~~~~v~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l   97 (216)
                                                            .|+.|++||+++++.    ......+.+.|.+++++|++..+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  211 (318)
T 4ggc_A          132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  211 (318)
T ss_dssp             EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred             EeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence                                                  789999999987653    34455678889999999976533


Q ss_pred             ---EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec--ccCeE---------
Q 043942           98 ---CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC--VDGKV---------  163 (216)
Q Consensus        98 ---~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~i---------  163 (216)
                         ++++.++.|++||.+.........                +...+..+.|+|++..+++++  .|+.+         
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~  275 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGACLSAVD----------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA  275 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCCEEEEEE----------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred             EEEEecCCCCEEEEEeccccccccccc----------------ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence               467789999999999887766554                677899999999998877654  67776         


Q ss_pred             -----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          164 -----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       164 -----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                           .+|...|++++|+|++++|+|++.||+|+|||+.+..
T Consensus       276 ~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence                 5799999999999999999999999999999997654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-30  Score=196.10  Aligned_cols=186  Identities=18%  Similarity=0.279  Sum_probs=162.9

Q ss_pred             CCCceeEEeec-cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEE
Q 043942            2 NQGDWASEILG-HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWM   66 (216)
Q Consensus         2 ~~g~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i   66 (216)
                      ++++....+.. |...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+              .++.|++
T Consensus       121 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i  200 (401)
T 4aez_A          121 DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHH  200 (401)
T ss_dssp             TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEE
Confidence            46777777765 88899999999999999999999999999999999999998887765              8999999


Q ss_pred             EECC-CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           67 WNAD-RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        67 ~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      ||++ ....+..+.+|.+.|.+++|+|+++++++++.|+.|++||+++++....+..               |...|.++
T Consensus       201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---------------~~~~v~~~  265 (401)
T 4aez_A          201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN---------------HNAAVKAV  265 (401)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC---------------CSSCCCEE
T ss_pred             EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC---------------CcceEEEE
Confidence            9999 5677788899999999999999999999999999999999999888888776               88999999


Q ss_pred             EeCCCCc-EEEEec--ccCeE-------------EeeeCCEEEEEEecCCCeEEEE--eCCCcEEEEEcccccce
Q 043942          146 SWPGTSK-YLVTGC--VDGKV-------------DGHIDAIQSLSVSAIRESLVSV--SVDGTARVFEIAEFRRA  202 (216)
Q Consensus       146 ~~~~~~~-~l~~~~--~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~--~~d~~v~vw~~~~~~~~  202 (216)
                      +|+|++. ++++++  .|+.+             ..+...|.+++|+|++++++++  +.||.|++|++.+++..
T Consensus       266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             EECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred             EECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence            9999775 555554  68887             4566789999999999999985  48999999999885443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-30  Score=211.25  Aligned_cols=179  Identities=21%  Similarity=0.330  Sum_probs=151.5

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------   59 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------   59 (216)
                      +...+.+.+|...|.+++|+|++++|++|+.|+.|++||+.+++....+.+|...+                        
T Consensus       420 ~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  499 (694)
T 3dm0_A          420 GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW  499 (694)
T ss_dssp             CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            34567889999999999999999999999999999999999998888887776654                        


Q ss_pred             ---------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe
Q 043942           60 ---------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG  100 (216)
Q Consensus        60 ---------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~  100 (216)
                                                             .|++|++||+++++....+.+|.+.|++++|+|++++|++|
T Consensus       500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence                                                   46777888888777788888999999999999999999999


Q ss_pred             cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------E------
Q 043942          101 SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------D------  164 (216)
Q Consensus       101 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------~------  164 (216)
                      +.|+.|++||+++++.+..+.                +...+.+++|+|++.++++++.++..          .      
T Consensus       580 ~~Dg~i~iwd~~~~~~~~~~~----------------~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~  643 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGKKLYSLE----------------ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDL  643 (694)
T ss_dssp             ETTSBCEEEETTTTEEEECCB----------------CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCC
T ss_pred             eCCCeEEEEECCCCceEEEec----------------CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccc
Confidence            999999999999998877665                45679999999999988887655422          0      


Q ss_pred             ----------------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          165 ----------------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       165 ----------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                                      .+...+++++|+|+|++|++|+.||.|++|++..
T Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          644 KAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             C----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                            0112378999999999999999999999999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.9e-30  Score=190.17  Aligned_cols=182  Identities=19%  Similarity=0.265  Sum_probs=154.1

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcc-----------------cCc
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGI-----------------EDS   62 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~-----------------~~~   62 (216)
                      +++++.+..+++|.+.|.+++|+|++++|++|+.|++|++||++++ .....+.+|...+                 .|+
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~  163 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence            3578889999999999999999999999999999999999999887 4445566655433                 799


Q ss_pred             EEEEEECCCcceeeeee-ccCCCeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942           63 TVWMWNADRGAYLNMFS-GHGSGLTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      +|++||++++.+...+. +|...+..++|+|  ++++|++|+.|+.|++||+++++.+..+..               |.
T Consensus       164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~---------------h~  228 (304)
T 2ynn_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------------HM  228 (304)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC---------------CS
T ss_pred             eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC---------------CC
Confidence            99999998877665554 4667899999987  778999999999999999999999888887               99


Q ss_pred             cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCC--eEEEEeCCCcEEEEEccc
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRE--SLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~--~l~s~~~d~~v~vw~~~~  198 (216)
                      ..|.+++|+|++++|++++.||.+              ..|...+.+++|+|++.  ++++++ |..+.+|++.+
T Consensus       229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~  302 (304)
T 2ynn_A          229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN  302 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred             CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence            999999999999999999999988              45667899999999875  466665 55577888765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=1.1e-30  Score=197.11  Aligned_cols=171  Identities=16%  Similarity=0.183  Sum_probs=141.8

Q ss_pred             cccceEEEEEccCCCEEEE--EcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCccee
Q 043942           13 HKDSFSSLAFSTDGQLLAS--GGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAYL   75 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s--~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~   75 (216)
                      +...+.+++|||||+++++  ++.|++|++||+.+++.+..+..+. .+               .++.+.+|+..+++.+
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~-~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~  210 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG-EVKDLHFSTDGKVVAYITGSSLEVISTVTGSCI  210 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS-CCCEEEECTTSSEEEEECSSCEEEEETTTCCEE
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC-ceEEEEEccCCceEEeccceeEEEEEeccCcce
Confidence            3456889999999998765  4478999999999999888886432 22               5677888888877665


Q ss_pred             e--eeeccCCCeeEEEEcCCCcEEEEecCCC----eEEEEeCCCCcee----EEeecccccccccceEEEeeeecCeEEE
Q 043942           76 N--MFSGHGSGLTCGDFTTDGKTICTGSDNA----TLSIWNPKGGENF----HAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        76 ~--~~~~~~~~v~~~~~~~~~~~l~t~~~d~----~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      .  ....|...|.+++|+|+++.+++++.|+    .++.||+......    ..+..               |...|+++
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------~~~~V~~~  275 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN---------------RFKGITSM  275 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES---------------SCSCEEEE
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC---------------CCCCeEeE
Confidence            4  3456888999999999999999998887    6888998866542    22332               78899999


Q ss_pred             EeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          146 SWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      +|+|+|++|++|+.|+.|               .+|..+|++++|+|||++|+++|.|++|+||++...
T Consensus       276 ~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          276 DVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999988               468899999999999999999999999999999653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.98  E-value=1.4e-29  Score=196.32  Aligned_cols=185  Identities=20%  Similarity=0.311  Sum_probs=162.7

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------------
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------------   59 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------------   59 (216)
                      +++++++.++.+|.+.|.+++|+|++ +|++|+.||.|++||+.+++....+..|...+                     
T Consensus       149 ~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~  227 (464)
T 3v7d_B          149 SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN  227 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred             CCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence            35788899999999999999999987 99999999999999999988777776554432                     


Q ss_pred             ------------------------------------------------------------cCcEEEEEECCCcceeeeee
Q 043942           60 ------------------------------------------------------------EDSTVWMWNADRGAYLNMFS   79 (216)
Q Consensus        60 ------------------------------------------------------------~~~~v~i~d~~~~~~~~~~~   79 (216)
                                                                                  .|+.|++||+++++.+..+.
T Consensus       228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  307 (464)
T 3v7d_B          228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS  307 (464)
T ss_dssp             CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence                                                                        36777888888788888888


Q ss_pred             ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942           80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      +|...|.+++|+|+++.+++|+.|+.|++||+++++.+..+..               |...|.++.|+  +.++++++.
T Consensus       308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---------------h~~~v~~~~~~--~~~l~s~s~  370 (464)
T 3v7d_B          308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG---------------HTALVGLLRLS--DKFLVSAAA  370 (464)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC---------------CSSCEEEEEEC--SSEEEEEET
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---------------CCCcEEEEEEc--CCEEEEEeC
Confidence            9999999999999999999999999999999999999988877               89999999997  589999999


Q ss_pred             cCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          160 DGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       160 ~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      ||.+             ..+...+..++|+|+++++++++ |+.|++||+++++.+..
T Consensus       371 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          371 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             TSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             CCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            9988             34556778889999999999998 99999999999887764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.98  E-value=2.1e-29  Score=187.11  Aligned_cols=175  Identities=19%  Similarity=0.260  Sum_probs=157.9

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~   69 (216)
                      ....+..|...|.+++|+|++++|++++.|+.|++||+.+++....+..+...+                .++.|++||+
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  212 (337)
T 1gxr_A          133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL  212 (337)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence            566788899999999999999999999999999999999999888888776654                7899999999


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ++++.+..+. +...+.+++|+|+++++++++.|+.|++||+++++.. .+..               |...+.+++|+|
T Consensus       213 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~---------------~~~~v~~~~~~~  275 (337)
T 1gxr_A          213 REGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL---------------HESCVLSLKFAY  275 (337)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC---------------CSSCEEEEEECT
T ss_pred             CCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC---------------CccceeEEEECC
Confidence            9998887775 7788999999999999999999999999999987654 3333               888999999999


Q ss_pred             CCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          150 TSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       150 ~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      +++++++++.||.+             ..|...|.+++|+|++++|++++.||.|++|++.
T Consensus       276 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             CCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            99999999999988             4678899999999999999999999999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.98  E-value=1.6e-30  Score=199.13  Aligned_cols=183  Identities=19%  Similarity=0.208  Sum_probs=156.8

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVW   65 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~   65 (216)
                      ++++....+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++....+..|...+                .|+.|+
T Consensus       127 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~  206 (420)
T 3vl1_A          127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR  206 (420)
T ss_dssp             TSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            4667777778999999999999999999999999999999999999999998887765                789999


Q ss_pred             EEECCCcceeeeeecc---C---------------------CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEee
Q 043942           66 MWNADRGAYLNMFSGH---G---------------------SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIR  121 (216)
Q Consensus        66 i~d~~~~~~~~~~~~~---~---------------------~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~  121 (216)
                      +||+++++.+..+..|   .                     ..+.+++|+|+++++++++.|+.|++||+++++....+.
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            9999999988887753   2                     344555568899999999999999999999988776664


Q ss_pred             cccccccccceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE---------------Ee-eeCCEEEEEEecCCCeEEE
Q 043942          122 RSSLEFSLNYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV---------------DG-HIDAIQSLSVSAIRESLVS  184 (216)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i---------------~~-~~~~i~~~~~~~~~~~l~s  184 (216)
                      .              .|...+.+++|+|++. ++++++.||.+               .. |...|..+. .+++++|++
T Consensus       287 ~--------------~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s  351 (420)
T 3vl1_A          287 S--------------KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVS  351 (420)
T ss_dssp             C--------------TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEE
T ss_pred             c--------------ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEE
Confidence            3              1678899999999998 99999999988               23 566777775 468889999


Q ss_pred             EeCCCcEEEEEcccc
Q 043942          185 VSVDGTARVFEIAEF  199 (216)
Q Consensus       185 ~~~d~~v~vw~~~~~  199 (216)
                      ++.|+.|++|++...
T Consensus       352 ~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          352 SGFDTSIKLDIISDP  366 (420)
T ss_dssp             ETTTEEEEEEEECCT
T ss_pred             ecCCccEEEEeccCC
Confidence            999999999999874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=5.8e-30  Score=192.79  Aligned_cols=187  Identities=17%  Similarity=0.200  Sum_probs=160.2

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~v~i~d~~   70 (216)
                      .+..|.++|.+++|+|++++|++++.|+.|++||+.+++  ....+..|...+                .|+.|++||++
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            355699999999999999999999999999999999987  788888877655                78999999998


Q ss_pred             Ccceeee--eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee---EEeecccccccccceEEEeeeecCeEEE
Q 043942           71 RGAYLNM--FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF---HAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        71 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      +++....  +..|...|.+++|+|+++++++++.|+.|++||++.+...   ..+..              .|...|.++
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~--------------~~~~~i~~~  148 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK--------------PIRSTVLSL  148 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT--------------TCCSCEEEE
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec--------------ccCCCeeEE
Confidence            8765433  4668899999999999999999999999999999987642   22211              178899999


Q ss_pred             EeCCCCcEEEEecccCeE---E-----------------------------eeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942          146 SWPGTSKYLVTGCVDGKV---D-----------------------------GHIDAIQSLSVSAIRESLVSVSVDGTARV  193 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i---~-----------------------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~v  193 (216)
                      +|+|+++++++++.|+.+   .                             .|...|.+++|+|++++|++++.|+.|++
T Consensus       149 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  228 (372)
T 1k8k_C          149 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL  228 (372)
T ss_dssp             EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence            999999999999998876   1                             45678999999999999999999999999


Q ss_pred             EEcccccceeecCCcc
Q 043942          194 FEIAEFRRATKAPSYS  209 (216)
Q Consensus       194 w~~~~~~~~~~~~~~~  209 (216)
                      ||+++++....+..+.
T Consensus       229 ~d~~~~~~~~~~~~~~  244 (372)
T 1k8k_C          229 ADADKKMAVATLASET  244 (372)
T ss_dssp             EEGGGTTEEEEEECSS
T ss_pred             EECCCCceeEEEccCC
Confidence            9999988777665554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=5.5e-30  Score=193.13  Aligned_cols=182  Identities=15%  Similarity=0.223  Sum_probs=155.1

Q ss_pred             CCceeEEeeccccceEEEEEccC--CCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------------c
Q 043942            3 QGDWASEILGHKDSFSSLAFSTD--GQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------------E   60 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------------~   60 (216)
                      +++.+..+.+|...|.+++|+++  +++|++++.|+.|++||+.+++  ....+..+...+                  .
T Consensus        44 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  123 (379)
T 3jrp_A           44 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS  123 (379)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC
Confidence            45677888999999999999987  8999999999999999999886  555555544333                  7


Q ss_pred             CcEEEEEECCCcc--eeeeeeccCCCeeEEEEcC-------------CCcEEEEecCCCeEEEEeCCCCcee----EEee
Q 043942           61 DSTVWMWNADRGA--YLNMFSGHGSGLTCGDFTT-------------DGKTICTGSDNATLSIWNPKGGENF----HAIR  121 (216)
Q Consensus        61 ~~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~t~~~d~~i~~wd~~~~~~~----~~~~  121 (216)
                      ++.|++||++++.  ....+..|...|.+++|+|             ++.++++++.|+.|++||++++...    ..+.
T Consensus       124 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  203 (379)
T 3jrp_A          124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE  203 (379)
T ss_dssp             TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred             CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe
Confidence            8999999998773  4456678999999999999             6999999999999999999876533    3333


Q ss_pred             cccccccccceEEEeeeecCeEEEEeCCC---CcEEEEecccCeE-------------------EeeeCCEEEEEEecCC
Q 043942          122 RSSLEFSLNYWMICTSLYDGVTCLSWPGT---SKYLVTGCVDGKV-------------------DGHIDAIQSLSVSAIR  179 (216)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~i-------------------~~~~~~i~~~~~~~~~  179 (216)
                      .               |...|.+++|+|+   +.++++++.||.+                   ..|...|.+++|+|++
T Consensus       204 ~---------------h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  268 (379)
T 3jrp_A          204 G---------------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG  268 (379)
T ss_dssp             C---------------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS
T ss_pred             c---------------ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC
Confidence            3               8899999999999   8999999999987                   2377889999999999


Q ss_pred             CeEEEEeCCCcEEEEEcccc
Q 043942          180 ESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       180 ~~l~s~~~d~~v~vw~~~~~  199 (216)
                      ++|++++.||.|++|++...
T Consensus       269 ~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          269 NVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CCEEEEESSSSEEEEEEEET
T ss_pred             CEEEEecCCCcEEEEeCCCC
Confidence            99999999999999999854

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=4.9e-31  Score=198.04  Aligned_cols=194  Identities=19%  Similarity=0.227  Sum_probs=155.3

Q ss_pred             CCCCceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEE---eCCCCcc----------------c
Q 043942            1 INQGDWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTV---EGPRGGI----------------E   60 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~---~~~~~~~----------------~   60 (216)
                      +++++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+.+++....+   ..+...+                .
T Consensus       102 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  181 (366)
T 3k26_A          102 PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM  181 (366)
T ss_dssp             TTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET
T ss_pred             chhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC
Confidence            356888999999999999999999 8999999999999999999999988888   4555544                7


Q ss_pred             CcEEEEEECCCcceeeeeec----------------------------cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942           61 DSTVWMWNADRGAYLNMFSG----------------------------HGSGLTCGDFTTDGKTICTGSDNATLSIWNPK  112 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~----------------------------~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~  112 (216)
                      |+.|++||+++++....+..                            |...|.+++|+  ++++++++.|+.|++||++
T Consensus       182 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~  259 (366)
T 3k26_A          182 DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPG  259 (366)
T ss_dssp             TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEES
T ss_pred             CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCC
Confidence            89999999998765544443                            89999999998  7799999999999999998


Q ss_pred             CCceeEEeecccccccccceEEEeeeecCeEEEEeCCC--CcEEEEecccCeE------------------Eee--eCCE
Q 043942          113 GGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT--SKYLVTGCVDGKV------------------DGH--IDAI  170 (216)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~i------------------~~~--~~~i  170 (216)
                      ++........ ..............|...|.+++|+|+  +++|++++.||.+                  ..|  ...|
T Consensus       260 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v  338 (366)
T 3k26_A          260 KMEDDIDKIK-PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAI  338 (366)
T ss_dssp             STTCCGGGCC-TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCE
T ss_pred             Cccccccccc-cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCce
Confidence            7754100000 000000011112237888999999999  9999999999988                  233  6889


Q ss_pred             EEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          171 QSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       171 ~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      .+++|+|++++|++++.||.|++||+.
T Consensus       339 ~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          339 RQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            999999999999999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.7e-31  Score=206.49  Aligned_cols=176  Identities=12%  Similarity=0.052  Sum_probs=147.1

Q ss_pred             EEeeccccceEEEEEccC------CCEEEEEcCCCcEEEEECCCCce-----------EEEEeCCCCcc-----------
Q 043942            8 SEILGHKDSFSSLAFSTD------GQLLASGGFHGLVQNRDTSSRNL-----------QCTVEGPRGGI-----------   59 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~------~~~l~s~~~d~~v~vwd~~~~~~-----------~~~~~~~~~~~-----------   59 (216)
                      .++.+|.+.|++++|+|+      +.+||+++.||+|++||+.+++.           ...+.+|...+           
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l  280 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV  280 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence            346678899999999996      57999999999999999987632           12444444333           


Q ss_pred             ----cCcEEEEEECCCc-ceeeeeeccCCCeeEE--EEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccc
Q 043942           60 ----EDSTVWMWNADRG-AYLNMFSGHGSGLTCG--DFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNY  131 (216)
Q Consensus        60 ----~~~~v~i~d~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  131 (216)
                          .|++|++||++++ .+...+.+|...|.++  +|+|++ .+|++|+.|++|++||+++++....+..         
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~---------  351 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS---------  351 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE---------
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc---------
Confidence                8999999999976 4455688999999999  578887 8999999999999999998876655543         


Q ss_pred             eEEEeeee--cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          132 WMICTSLY--DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       132 ~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                            |.  ..+.+++|+|++..+++++.|+.+              .+|...|++++|+|++++|++|+.|++|++||
T Consensus       352 ------~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          352 ------RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             ------ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             ------ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence                  43  247899999999999999999877              57889999999999999999999999999999


Q ss_pred             ccc
Q 043942          196 IAE  198 (216)
Q Consensus       196 ~~~  198 (216)
                      +..
T Consensus       426 ~~~  428 (524)
T 2j04_B          426 AAR  428 (524)
T ss_dssp             SCS
T ss_pred             chH
Confidence            764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.1e-29  Score=193.83  Aligned_cols=186  Identities=17%  Similarity=0.318  Sum_probs=158.5

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC-CCceEEEEeCCCCcc----------------cCcE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS-SRNLQCTVEGPRGGI----------------EDST   63 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~~----------------~~~~   63 (216)
                      +++++.+..+.+|...|.+++|+  +++|++++.|+.|++||+. .......+..|...+                .|+.
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~  240 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV  240 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence            35678889999999999999994  5799999999999999999 456677777776655                7899


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      |++||+++++.+..+..|...|.+++|+|++. ++++++  .|+.|++||+++++....+.                +..
T Consensus       241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----------------~~~  304 (401)
T 4aez_A          241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----------------AGS  304 (401)
T ss_dssp             EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----------------CSS
T ss_pred             EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----------------CCC
Confidence            99999999999999999999999999999764 566654  79999999999998888776                567


Q ss_pred             CeEEEEeCCCCcEEEE--ecccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          141 GVTCLSWPGTSKYLVT--GCVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~--~~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      .+.+++|+|+++++++  |+.||.+                .+|...|.+++|+|++++|++++.||.|++|++.+++..
T Consensus       305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            8999999999999998  4478887                467889999999999999999999999999999987765


Q ss_pred             ee
Q 043942          203 TK  204 (216)
Q Consensus       203 ~~  204 (216)
                      ..
T Consensus       385 ~~  386 (401)
T 4aez_A          385 KR  386 (401)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=8.1e-31  Score=200.69  Aligned_cols=194  Identities=15%  Similarity=0.186  Sum_probs=157.8

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~   70 (216)
                      ...+..| ..+....|+|++++|++++.|+.|++||+.+++....+..|...+                .|+.|++||++
T Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A           91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            3334444 445556789999999999999999999999988877777776655                78999999999


Q ss_pred             CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccc-cceEEE--------eeeecC
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL-NYWMIC--------TSLYDG  141 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~  141 (216)
                      +++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+......... ......        ..+...
T Consensus       170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence            99999999999999999999999999999999999999999999988887642211000 000000        013466


Q ss_pred             eEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEcccccc
Q 043942          142 VTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      +.+++|+|+++++++++.||.+               ..|...|.+++|+|+++ +|++++.||.|++||+++++.
T Consensus       250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             CCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             ccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence            7778889999999999999988               34678899999999998 999999999999999998754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.3e-29  Score=188.96  Aligned_cols=208  Identities=15%  Similarity=0.271  Sum_probs=160.2

Q ss_pred             CceeEEeeccccceEEEEEccC---CCEEEEEcCCCcEEEEECCC-CceE-EEEeCCCCcc----------------cCc
Q 043942            4 GDWASEILGHKDSFSSLAFSTD---GQLLASGGFHGLVQNRDTSS-RNLQ-CTVEGPRGGI----------------EDS   62 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~vwd~~~-~~~~-~~~~~~~~~~----------------~~~   62 (216)
                      .+.+..+++|.+.|++++|+|+   |++|++++.||.|++||+.+ ++.. ..+..|...+                .|+
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            4567788899999999999998   69999999999999999997 5444 6666666655                799


Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEE--cCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccc----cccceEE--
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDF--TTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEF----SLNYWMI--  134 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~--  134 (216)
                      .|++||+++++.+. +..|...|.+++|  +|+++++++++.|+.|++||+++++.+..+.......    .......  
T Consensus       109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVAT  187 (368)
T ss_dssp             EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEE
T ss_pred             cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEe
Confidence            99999999988766 5569999999999  8999999999999999999999988777666432100    0000000  


Q ss_pred             --------------------EeeeecCeEEEEeCCCCcE----EEEecccCeE-----------------EeeeC-----
Q 043942          135 --------------------CTSLYDGVTCLSWPGTSKY----LVTGCVDGKV-----------------DGHID-----  168 (216)
Q Consensus       135 --------------------~~~~~~~v~~~~~~~~~~~----l~~~~~~~~i-----------------~~~~~-----  168 (216)
                                          .......+.++.+.++...    +++++.|+.+                 ..|..     
T Consensus       188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  267 (368)
T 3mmy_A          188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT  267 (368)
T ss_dssp             GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred             CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence                                0012233455555444433    8999999977                 23333     


Q ss_pred             -------CEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeE
Q 043942          169 -------AIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKL  212 (216)
Q Consensus       169 -------~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~  212 (216)
                             +|.+++|+|++++|++++.||.|++||+.+++....+..+...+
T Consensus       268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  318 (368)
T 3mmy_A          268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPI  318 (368)
T ss_dssp             CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCE
T ss_pred             cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCc
Confidence                   79999999999999999999999999999988887777655443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=9.5e-31  Score=201.65  Aligned_cols=144  Identities=17%  Similarity=0.165  Sum_probs=115.0

Q ss_pred             eEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEE
Q 043942            7 ASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMW   67 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~   67 (216)
                      ...+.+|.+.|++++|+| ++++|++++.|++|++||++++........+....                  .++.|++|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL  236 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred             EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence            445568999999999998 68999999999999999998765433332222111                  78999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      |++ ++.+..+.+|...|++++|+|+++ ++++|+.|+.|++||+++.+....+...            .+|...|++++
T Consensus       237 d~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~------------~~h~~~v~~~~  303 (435)
T 4e54_B          237 NMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS------------LPHRHPVNAAC  303 (435)
T ss_dssp             ESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC------------CBCSSCEEECC
T ss_pred             ccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe------------eecccccccee
Confidence            997 456778889999999999999876 7889999999999999987654333210            12788899999


Q ss_pred             eCCCCcEEEEecccCeE
Q 043942          147 WPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i  163 (216)
                      |+|++++|++++.|+.+
T Consensus       304 ~spdg~~l~s~~~D~~i  320 (435)
T 4e54_B          304 FSPDGARLLTTDQKSEI  320 (435)
T ss_dssp             BCTTSSEEEEEESSSCE
T ss_pred             ECCCCCeeEEEcCCCEE
Confidence            99999999999999877

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=5.1e-30  Score=191.96  Aligned_cols=189  Identities=14%  Similarity=0.196  Sum_probs=152.9

Q ss_pred             CCCc-eeEEeeccccceEEEE------EccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeCCCC----------------
Q 043942            2 NQGD-WASEILGHKDSFSSLA------FSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEGPRG----------------   57 (216)
Q Consensus         2 ~~g~-~~~~~~~h~~~v~~~~------~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~----------------   57 (216)
                      ++++ ++..+.+|...|.+++      |+|++++|++++.|+.|++||+.+++ ....+..+..                
T Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  177 (357)
T 3i2n_A           98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN  177 (357)
T ss_dssp             TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred             CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence            3455 7888999999999995      47899999999999999999999876 5566544332                


Q ss_pred             ---cc-----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC---CCcEEEEecCCCeEEEEeCCCCceeEEeeccccc
Q 043942           58 ---GI-----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT---DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE  126 (216)
Q Consensus        58 ---~~-----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~  126 (216)
                         ..     .++.|++||+++++.... ..|...|.+++|+|   +++++++++.|+.|++||+++++....+..    
T Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----  252 (357)
T 3i2n_A          178 QEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS----  252 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE----
T ss_pred             CCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee----
Confidence               00     789999999999887544 55889999999999   999999999999999999987665444331    


Q ss_pred             ccccceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE---------------------------------EeeeCCEEE
Q 043942          127 FSLNYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV---------------------------------DGHIDAIQS  172 (216)
Q Consensus       127 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i---------------------------------~~~~~~i~~  172 (216)
                            .....|...|.+++|+|+++ ++++++.||.+                                 ..|..+|.+
T Consensus       253 ------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~  326 (357)
T 3i2n_A          253 ------VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS  326 (357)
T ss_dssp             ------EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred             ------eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence                  01112889999999999998 89999999987                                 126778999


Q ss_pred             EEEecCCCeEE-EEeCCCcEEEEEcccccc
Q 043942          173 LSVSAIRESLV-SVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       173 ~~~~~~~~~l~-s~~~d~~v~vw~~~~~~~  201 (216)
                      ++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus       327 ~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          327 LDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             EEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            99999999998 899999999999987653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.5e-30  Score=196.67  Aligned_cols=191  Identities=6%  Similarity=-0.039  Sum_probs=141.3

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc---eEEEEeCCCCcc----------------cCcEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN---LQCTVEGPRGGI----------------EDSTVW   65 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~----------------~~~~v~   65 (216)
                      +++..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++   ....+..|...+                .|+.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS  125 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence            5777888999999999999999999999999999999999876   555555555544                789999


Q ss_pred             EEECCCcc---eeeeeec-cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccccc---ccceEEEeee
Q 043942           66 MWNADRGA---YLNMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFS---LNYWMICTSL  138 (216)
Q Consensus        66 i~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  138 (216)
                      +||+++++   ....+.. |...|.+++|+|++++|++++.|+.|++||++.+..............   ....... .|
T Consensus       126 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  204 (377)
T 3dwl_C          126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS  204 (377)
T ss_dssp             ECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC
T ss_pred             EEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC
Confidence            99999876   3667777 999999999999999999999999999999964331111000000000   0000001 38


Q ss_pred             ecCeEEEEeCCCCcEEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      ...|.+++|+|++++|++++.|+.+                  ..|..+|.+++|+|++++|++++.|+.+ +|+..
T Consensus       205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            8999999999999999999999988                  4667789999999999999998866655 67665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=2.4e-29  Score=215.05  Aligned_cols=198  Identities=20%  Similarity=0.288  Sum_probs=171.0

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDST   63 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~   63 (216)
                      .+++.+.++.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...+                  .|+.
T Consensus       645 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~  724 (1249)
T 3sfz_A          645 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF  724 (1249)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred             CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence            5788899999999999999999999999999999999999999999999998877654                  6899


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc------------------c
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS------------------L  125 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~------------------~  125 (216)
                      |++||+++++.+..+.+|.+.|++++|+|+++++++++.|+.|++||+.+++....+....                  .
T Consensus       725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  804 (1249)
T 3sfz_A          725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC  804 (1249)
T ss_dssp             EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred             EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence            9999999999999999999999999999999999999999999999999887766554211                  0


Q ss_pred             cccccc----------------------eEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCC
Q 043942          126 EFSLNY----------------------WMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDA  169 (216)
Q Consensus       126 ~~~~~~----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~  169 (216)
                      .+.+..                      .....+|...+.+++|+|+++++++++.++.+              .+|...
T Consensus       805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~  884 (1249)
T 3sfz_A          805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW  884 (1249)
T ss_dssp             CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence            111111                      01112467889999999999999999999987              578899


Q ss_pred             EEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          170 IQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       170 i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      |.+++|+|++++|++++.|+.|++|++.+.
T Consensus       885 v~~v~~spdg~~l~s~s~dg~v~vw~~~~~  914 (1249)
T 3sfz_A          885 VHGVMFSPDGSSFLTASDDQTIRVWETKKV  914 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence            999999999999999999999999998753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.9e-30  Score=197.48  Aligned_cols=189  Identities=14%  Similarity=0.176  Sum_probs=153.6

Q ss_pred             CCceeEEe-eccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCC---Cc---eEEEEeCCCCcc---------------
Q 043942            3 QGDWASEI-LGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSS---RN---LQCTVEGPRGGI---------------   59 (216)
Q Consensus         3 ~g~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~---~~---~~~~~~~~~~~~---------------   59 (216)
                      +|+++.++ ++|.+.|++++|+| ++++|++|+.|+.|++||+.+   +.   ....+. |...+               
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCCCCEEEEE
Confidence            57788889 88999999999999 999999999999999999865   21   111111 11111               


Q ss_pred             ------------------------------------------------------------cCcEEEEEECCCcceeeeee
Q 043942           60 ------------------------------------------------------------EDSTVWMWNADRGAYLNMFS   79 (216)
Q Consensus        60 ------------------------------------------------------------~~~~v~i~d~~~~~~~~~~~   79 (216)
                                                                                  .|+.|++||+++++.+..+.
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence                                                                        45777778887788888888


Q ss_pred             c--cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC----CCCcE
Q 043942           80 G--HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP----GTSKY  153 (216)
Q Consensus        80 ~--~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~  153 (216)
                      +  |...|++++|+|++++|++|+.|+.|++||+++++.+..+...              +...|.+++|+    |++.+
T Consensus       210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~s~~~~~  275 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--------------DHAPITHVEVCQFYGKNSVI  275 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--------------TCEEEEEEEECTTTCTTEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--------------CCCceEEEEeccccCCCccE
Confidence            7  8899999999999999999999999999999999888877521              66789999554    56889


Q ss_pred             EEEecccCeE--------------E--------------------------eeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942          154 LVTGCVDGKV--------------D--------------------------GHIDAIQSLSVSAIRESLVSVSVDGTARV  193 (216)
Q Consensus       154 l~~~~~~~~i--------------~--------------------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~v  193 (216)
                      +++++.|+.+              .                          .|...|.+++|+ ++++|++++.|+.|++
T Consensus       276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~  354 (437)
T 3gre_A          276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM  354 (437)
T ss_dssp             EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred             EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence            9999999987              1                          156678999999 7799999999999999


Q ss_pred             EEcccccceeecCC
Q 043942          194 FEIAEFRRATKAPS  207 (216)
Q Consensus       194 w~~~~~~~~~~~~~  207 (216)
                      ||+.+++....+..
T Consensus       355 wd~~~~~~~~~~~~  368 (437)
T 3gre_A          355 FSLNELSSSKAVIS  368 (437)
T ss_dssp             EETTCGGGCEEEEC
T ss_pred             EECCCcccceEEec
Confidence            99999887766554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.7e-29  Score=188.04  Aligned_cols=194  Identities=12%  Similarity=0.057  Sum_probs=134.0

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWM   66 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i   66 (216)
                      .+.+++.++++|.+.|++++|+|||++|++|+.++ +++||..+++.......+....               .+++|++
T Consensus         7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i   85 (355)
T 3vu4_A            7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHI   85 (355)
T ss_dssp             ------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred             cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence            34566777789999999999999999999998775 7899998876655443221111               6789999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceeEEee-----------------cc---cc
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG-ENFHAIR-----------------RS---SL  125 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~-~~~~~~~-----------------~~---~~  125 (216)
                      ||.++++.+..+. +...|.+++++++.  ++++ .|+.|++||+.++ +.+..+.                 ..   .+
T Consensus        86 Wd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v  161 (355)
T 3vu4_A           86 WDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQI  161 (355)
T ss_dssp             EETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCE
T ss_pred             EECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEE
Confidence            9999999988887 66789999998763  2222 2455666666554 2111110                 00   00


Q ss_pred             -ccccc------------------c-eEEEeeeecCeEEEEeCCCCcEEEEecccCe-E--------------E-e-eeC
Q 043942          126 -EFSLN------------------Y-WMICTSLYDGVTCLSWPGTSKYLVTGCVDGK-V--------------D-G-HID  168 (216)
Q Consensus       126 -~~~~~------------------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-i--------------~-~-~~~  168 (216)
                       ..+..                  . .....+|...|.+++|+|++++|++++.|+. +              . + |..
T Consensus       162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~  241 (355)
T 3vu4_A          162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA  241 (355)
T ss_dssp             EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred             EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence             00000                  0 2334458999999999999999999999997 7              3 3 889


Q ss_pred             CEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          169 AIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       169 ~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      .|.+++|+|++++|++++.|++|++||++...
T Consensus       242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             cEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            99999999999999999999999999997653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=8.4e-29  Score=211.72  Aligned_cols=190  Identities=19%  Similarity=0.282  Sum_probs=170.4

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~   70 (216)
                      ...+.+|.+.|++++|+|+|++|++|+.||.|++||..+++.+..+..|...+                .|+.|++||+.
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            34677999999999999999999999999999999999999999998887765                78999999999


Q ss_pred             CcceeeeeeccCCCeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      +++.+..+.+|...|.+++|+|  ++..+++|+.|+.|++||+++++....+..               |...|.+++|+
T Consensus       688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~---------------h~~~v~~~~~s  752 (1249)
T 3sfz_A          688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG---------------HTNSVNHCRFS  752 (1249)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC---------------CSSCEEEEEEC
T ss_pred             CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC---------------CCCCEEEEEEe
Confidence            9999999999999999999999  556899999999999999999998888876               88899999999


Q ss_pred             CCCcEEEEecccCeE-----------------------------------------------------------------
Q 043942          149 GTSKYLVTGCVDGKV-----------------------------------------------------------------  163 (216)
Q Consensus       149 ~~~~~l~~~~~~~~i-----------------------------------------------------------------  163 (216)
                      |+++++++++.||.+                                                                 
T Consensus       753 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~  832 (1249)
T 3sfz_A          753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL  832 (1249)
T ss_dssp             SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred             cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence            999999999988877                                                                 


Q ss_pred             ----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCccee
Q 043942          164 ----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFK  211 (216)
Q Consensus       164 ----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~  211 (216)
                          .+|...|.+++|+|+++++++++.|+.|++|++.+++....+..|...
T Consensus       833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~  884 (1249)
T 3sfz_A          833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW  884 (1249)
T ss_dssp             EEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred             eEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence                045678889999999999999999999999999988877766665543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=3e-29  Score=190.57  Aligned_cols=188  Identities=18%  Similarity=0.204  Sum_probs=161.1

Q ss_pred             eeEEeeccccceEEEEEccC----C---CEEEEEcCCCcEEEEECCCCce-----EEEEeCCC-----C-----------
Q 043942            6 WASEILGHKDSFSSLAFSTD----G---QLLASGGFHGLVQNRDTSSRNL-----QCTVEGPR-----G-----------   57 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~----~---~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~-----~-----------   57 (216)
                      ++..+.+|...|.+++|+|+    +   ++|++++.|+.|++||+.+++.     ...+..+.     .           
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            68889999999999999999    9   9999999999999999988775     66665542     1           


Q ss_pred             -----c-c----cCcEEEEEECCC------cceee-----eee-------ccCCCeeEEEEcCCCcEEEEecCCCeEEEE
Q 043942           58 -----G-I----EDSTVWMWNADR------GAYLN-----MFS-------GHGSGLTCGDFTTDGKTICTGSDNATLSIW  109 (216)
Q Consensus        58 -----~-~----~~~~v~i~d~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~w  109 (216)
                           . +    .++.|++||+++      ++.+.     .+.       .|...|.+++|+|++ .+++++.|+.|++|
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS  212 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence                 1 1    678899999998      66666     664       488899999999999 99999999999999


Q ss_pred             eCCCCceeEEeecccccccccceEEEeee---ecCeEEEEeCCCCcEEEEeccc---CeE--------------Ee----
Q 043942          110 NPKGGENFHAIRRSSLEFSLNYWMICTSL---YDGVTCLSWPGTSKYLVTGCVD---GKV--------------DG----  165 (216)
Q Consensus       110 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~---~~i--------------~~----  165 (216)
                      |+++++.+..+...            .+|   ...+.+++|+|++++|++++.|   +.+              ..    
T Consensus       213 d~~~~~~~~~~~~~------------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~  280 (397)
T 1sq9_A          213 ELSTLRPLYNFESQ------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS  280 (397)
T ss_dssp             ETTTTEEEEEEECC------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred             ECCCCceeEEEecc------------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence            99998887777530            014   7889999999999999999999   877              34    


Q ss_pred             ---------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          166 ---------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       166 ---------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                               |...|.+++|+|++++|++++.|+.|++||+.+++....+.
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence                     88999999999999999999999999999999988777666

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=1e-28  Score=184.91  Aligned_cols=182  Identities=15%  Similarity=0.260  Sum_probs=153.8

Q ss_pred             CCceeEEe-eccccceEEEEEccC---CCEEEEEcCCCcEEEEECCCCc-eEEEEeCCCCcc------------------
Q 043942            3 QGDWASEI-LGHKDSFSSLAFSTD---GQLLASGGFHGLVQNRDTSSRN-LQCTVEGPRGGI------------------   59 (216)
Q Consensus         3 ~g~~~~~~-~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~------------------   59 (216)
                      +++..... .+|...|.+++|+|+   +++|++++.|+.|++||+.+++ ....+..|...+                  
T Consensus        53 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l  132 (357)
T 3i2n_A           53 HGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI  132 (357)
T ss_dssp             SSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEE
T ss_pred             CCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEE
Confidence            44444332 378999999999998   6999999999999999999887 777776665532                  


Q ss_pred             ----cCcEEEEEECCCcc-eeeeeeccCC----CeeEEE----EcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc
Q 043942           60 ----EDSTVWMWNADRGA-YLNMFSGHGS----GLTCGD----FTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE  126 (216)
Q Consensus        60 ----~~~~v~i~d~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~  126 (216)
                          .|+.|++||++++. ++..+..|.+    .+.+++    |+|+++++++++.|+.|++||+++++......     
T Consensus       133 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----  207 (357)
T 3i2n_A          133 VTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-----  207 (357)
T ss_dssp             EEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-----
T ss_pred             EEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-----
Confidence                78999999999886 6777766554    788888    78899999999999999999999888755433     


Q ss_pred             ccccceEEEeeeecCeEEEEeCC---CCcEEEEecccCeE--------------E-----eeeCCEEEEEEecCCC-eEE
Q 043942          127 FSLNYWMICTSLYDGVTCLSWPG---TSKYLVTGCVDGKV--------------D-----GHIDAIQSLSVSAIRE-SLV  183 (216)
Q Consensus       127 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~i--------------~-----~~~~~i~~~~~~~~~~-~l~  183 (216)
                                 +...+.+++|+|   ++.++++++.||.+              .     .|...|.+++|+|+++ +|+
T Consensus       208 -----------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  276 (357)
T 3i2n_A          208 -----------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL  276 (357)
T ss_dssp             -----------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             -----------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence                       788999999999   99999999999988              2     7889999999999998 899


Q ss_pred             EEeCCCcEEEEEccccc
Q 043942          184 SVSVDGTARVFEIAEFR  200 (216)
Q Consensus       184 s~~~d~~v~vw~~~~~~  200 (216)
                      +++.||.|++||++...
T Consensus       277 ~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          277 TAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEETTSEEEEEEEECCS
T ss_pred             EEeCCCcEEEeecCCCc
Confidence            99999999999998654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=5.3e-29  Score=187.51  Aligned_cols=177  Identities=10%  Similarity=0.061  Sum_probs=151.3

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEE--eCCCCcc----------------cCcEEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV--EGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~~----------------~~~~v~i~   67 (216)
                      .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+  ..+...+                .++.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            78889999999999999999999999999999999999888755544  2333322                78999999


Q ss_pred             ECCCcce---e-eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC------------------CCceeEEeecccc
Q 043942           68 NADRGAY---L-NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK------------------GGENFHAIRRSSL  125 (216)
Q Consensus        68 d~~~~~~---~-~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~------------------~~~~~~~~~~~~~  125 (216)
                      |++++..   . .....|...|.+++|+|+++++++++.|+.|++||++                  .++.+..+..   
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  200 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---  200 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC---
Confidence            9987763   2 3335688999999999999999999999999999964                  4555555554   


Q ss_pred             cccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcE
Q 043942          126 EFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTA  191 (216)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v  191 (216)
                                  |...+.+++|+|+++++++++.|+.+              ..|..+|.+++|+|++++|+++ .|+.|
T Consensus       201 ------------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i  267 (372)
T 1k8k_C          201 ------------SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFP  267 (372)
T ss_dssp             ------------CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSC
T ss_pred             ------------CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeE
Confidence                        88899999999999999999999988              5677899999999999988877 89999


Q ss_pred             EEEEccc
Q 043942          192 RVFEIAE  198 (216)
Q Consensus       192 ~vw~~~~  198 (216)
                      ++|++.+
T Consensus       268 ~i~~~~~  274 (372)
T 1k8k_C          268 VLFTYDS  274 (372)
T ss_dssp             EEEEEET
T ss_pred             EEEEccC
Confidence            9999987

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8e-30  Score=200.00  Aligned_cols=176  Identities=11%  Similarity=0.073  Sum_probs=143.7

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeCCCC--------------cc-----cCcEEEE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEGPRG--------------GI-----EDSTVWM   66 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~--------------~~-----~~~~v~i   66 (216)
                      ..++.+|...|++++|+++ ..|++|+.||+|++||+++++ ....+..|..              ..     .|++|++
T Consensus       259 ~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl  337 (524)
T 2j04_B          259 SLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI  337 (524)
T ss_dssp             SEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred             eEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence            4578899999999999986 489999999999999998653 2222322221              11     7999999


Q ss_pred             EECCCcceeeeeeccCC--CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942           67 WNADRGAYLNMFSGHGS--GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      ||+++++....+.+|..  .|.+++|+|+++.+++++.|++|++||++++..+..+..               |...|++
T Consensus       338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g---------------H~~~V~s  402 (524)
T 2j04_B          338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS---------------RETTITA  402 (524)
T ss_dssp             ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE---------------CSSCEEE
T ss_pred             EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec---------------CCCceEE
Confidence            99999888777777754  588999999999999999999999999999887777665               8888888


Q ss_pred             EEeCCCCcEEEEecccCeE----------------------------------------------------------Eee
Q 043942          145 LSWPGTSKYLVTGCVDGKV----------------------------------------------------------DGH  166 (216)
Q Consensus       145 ~~~~~~~~~l~~~~~~~~i----------------------------------------------------------~~~  166 (216)
                      ++|+|++++|++|+.|+.+                                                          .+|
T Consensus       403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh  482 (524)
T 2j04_B          403 IGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAH  482 (524)
T ss_dssp             EECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------C
T ss_pred             EEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCC
Confidence            8888888888888877755                                                          345


Q ss_pred             eCCEEEEEEecCCC---eEEEEeCCCcEEEEEccc
Q 043942          167 IDAIQSLSVSAIRE---SLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       167 ~~~i~~~~~~~~~~---~l~s~~~d~~v~vw~~~~  198 (216)
                      ..+|.+++|+|+++   .+++|+.||.|+||++..
T Consensus       483 ~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          483 GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            67889999999964   899999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=3.4e-29  Score=190.33  Aligned_cols=192  Identities=17%  Similarity=0.146  Sum_probs=153.6

Q ss_pred             eEEeecc-----ccceEEEEEc----cCCCE-EEEEcCCCcEEEEECCC------CceEE-----EEeC-------CCCc
Q 043942            7 ASEILGH-----KDSFSSLAFS----TDGQL-LASGGFHGLVQNRDTSS------RNLQC-----TVEG-------PRGG   58 (216)
Q Consensus         7 ~~~~~~h-----~~~v~~~~~s----~~~~~-l~s~~~d~~v~vwd~~~------~~~~~-----~~~~-------~~~~   58 (216)
                      +..+..|     ...|.+++|+    |++++ |++++.|+.|++||+.+      ++.+.     .+..       +...
T Consensus       109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (397)
T 1sq9_A          109 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF  188 (397)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred             ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC
Confidence            7788888     5899999999    99999 99999999999999988      65554     5532       2222


Q ss_pred             c---------------cCcEEEEEECCCcceeeeeec---c---CCCeeEEEEcCCCcEEEEecCC---CeEEEEeCCCC
Q 043942           59 I---------------EDSTVWMWNADRGAYLNMFSG---H---GSGLTCGDFTTDGKTICTGSDN---ATLSIWNPKGG  114 (216)
Q Consensus        59 ~---------------~~~~v~i~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~t~~~d---~~i~~wd~~~~  114 (216)
                      +               .++.|++||+++++.+..+..   |   ...|.+++|+|++++|++++.|   +.|++||++++
T Consensus       189 i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          189 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             CCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             ceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            2               689999999999999999998   8   9999999999999999999999   99999999999


Q ss_pred             ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------E------ee--------
Q 043942          115 ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------D------GH--------  166 (216)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~------~~--------  166 (216)
                      +.+..+........  .......|...|.+++|+|++++|++++.|+.+              .      .|        
T Consensus       269 ~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~  346 (397)
T 1sq9_A          269 ERIGSLSVPTHSSQ--ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD  346 (397)
T ss_dssp             CEEEEECBC----------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred             cccceeccCccccc--ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence            88777753110000  000000167889999999999999999999988              4      56        


Q ss_pred             -------eCCEEEEEEecCC----------CeEEEEeCCCcEEEEEccccc
Q 043942          167 -------IDAIQSLSVSAIR----------ESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       167 -------~~~i~~~~~~~~~----------~~l~s~~~d~~v~vw~~~~~~  200 (216)
                             ..+|.+++|+|++          ++|++++.||.|++|++.+++
T Consensus       347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                   8899999999998          799999999999999998763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=9.9e-29  Score=186.39  Aligned_cols=200  Identities=13%  Similarity=0.107  Sum_probs=142.0

Q ss_pred             ccceEEEEEccCCCEEEEEcCCC-------cEEEEECCCCce--------EE--EEeCCCCcc-----------------
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHG-------LVQNRDTSSRNL--------QC--TVEGPRGGI-----------------   59 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~-------~v~vwd~~~~~~--------~~--~~~~~~~~~-----------------   59 (216)
                      ..||++++|+||+++|++|+.+.       .|++|++.....        ..  .+..+...+                 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            46899999999999999997543       599999875431        11  122222211                 


Q ss_pred             --------cCcEEEEEECCCccee-e---e-----eeccCCCeeEEEEcCCCcEEEE--ecCCCeEEEEeCCCCceeEEe
Q 043942           60 --------EDSTVWMWNADRGAYL-N---M-----FSGHGSGLTCGDFTTDGKTICT--GSDNATLSIWNPKGGENFHAI  120 (216)
Q Consensus        60 --------~~~~v~i~d~~~~~~~-~---~-----~~~~~~~v~~~~~~~~~~~l~t--~~~d~~i~~wd~~~~~~~~~~  120 (216)
                              .++.+++|++.+.... .   .     ...+...+.+++|+|||+++++  ++.|++|++||+++++.+..+
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~  173 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI  173 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence                    5788999998754321 1   1     1234456889999999998764  457999999999999888776


Q ss_pred             eccc----ccccccceEE-----------------------EeeeecCeEEEEeCCCCcEEEEecccCe----E------
Q 043942          121 RRSS----LEFSLNYWMI-----------------------CTSLYDGVTCLSWPGTSKYLVTGCVDGK----V------  163 (216)
Q Consensus       121 ~~~~----~~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~l~~~~~~~~----i------  163 (216)
                      ....    +.+.+....+                       ...|...+.+++|+|+++++++++.++.    +      
T Consensus       174 ~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~  253 (365)
T 4h5i_A          174 ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK  253 (365)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred             CCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc
Confidence            5321    1122211111                       1124556888888888888888877662    1      


Q ss_pred             ------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec-CCcceeEE
Q 043942          164 ------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA-PSYSFKLF  213 (216)
Q Consensus       164 ------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~-~~~~~~~~  213 (216)
                                  .+|..+|++++|+|+|++||+|+.|++|+|||+++++.+..+ ..|...+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~  316 (365)
T 4h5i_A          254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT  316 (365)
T ss_dssp             TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred             cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence                        456788999999999999999999999999999999887764 56665554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-29  Score=192.26  Aligned_cols=189  Identities=13%  Similarity=0.239  Sum_probs=157.8

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCC----CceEEEEeCCCCcc-----------------cCcEEEEEECC
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS----RNLQCTVEGPRGGI-----------------EDSTVWMWNAD   70 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~----~~~~~~~~~~~~~~-----------------~~~~v~i~d~~   70 (216)
                      .|...|.+++|+|++++|++++.|+.|++||+.+    .+....+..|...+                 .|+.|++||++
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            5888999999999999999999999999999988    34666666665544                 78999999999


Q ss_pred             Ccc------eee---eeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           71 RGA------YLN---MFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        71 ~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      +++      ...   ....|...|.+++|+|+ +.++++++.|+.|++||+++++.+..+......         .++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------~~~~~  215 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---------SGIKQ  215 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS---------SCCCC
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc---------cccCC
Confidence            876      332   24678899999999998 789999999999999999999888877651100         00278


Q ss_pred             CeEEEEeCCCC-cEEEEecccC---eE---------------E-eeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcccc
Q 043942          141 GVTCLSWPGTS-KYLVTGCVDG---KV---------------D-GHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       141 ~v~~~~~~~~~-~~l~~~~~~~---~i---------------~-~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      .+.+++|+|++ .++++++.++   .+               . +|...|.+++|+| ++++|++++.|+.|++||+.++
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence            89999999997 6899999887   65               4 7889999999999 9999999999999999999998


Q ss_pred             cceeecCCcc
Q 043942          200 RRATKAPSYS  209 (216)
Q Consensus       200 ~~~~~~~~~~  209 (216)
                      +....+..+.
T Consensus       296 ~~~~~~~~~~  305 (416)
T 2pm9_A          296 EQLSQFPARG  305 (416)
T ss_dssp             CEEEEEECSS
T ss_pred             ccceeecCCC
Confidence            8776665443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=1.5e-28  Score=190.58  Aligned_cols=204  Identities=23%  Similarity=0.372  Sum_probs=164.4

Q ss_pred             eeEEeeccccce-EEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEEC
Q 043942            6 WASEILGHKDSF-SSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNA   69 (216)
Q Consensus         6 ~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~   69 (216)
                      ....+.+|...| .++.+  ++++|++|+.||.|++||+.+++.+..+.+|...+               .|++|++||+
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~  190 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI  190 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence            456889998885 55555  56899999999999999999999999999887766               8999999999


Q ss_pred             CCcceeeeeeccCCCeeEEEEc--CCCcEEEEecCCCeEEEEeCCCCceeEEeecccc--------cccccceEEEeeee
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFT--TDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL--------EFSLNYWMICTSLY  139 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  139 (216)
                      ++++.+..+.+|...|.+++|+  ++++++++++.|+.|++||++++...........        ...........+|.
T Consensus       191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence            9999999999999999999998  5789999999999999999998765433221100        00111123334577


Q ss_pred             cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      ..+.++  +++++++++++.|+.+              .+|...|.+++|+|++++|++++.||.|++||+.+++....+
T Consensus       271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            777776  5778999999999987              468899999999999999999999999999999998888777


Q ss_pred             CCcceeEE
Q 043942          206 PSYSFKLF  213 (216)
Q Consensus       206 ~~~~~~~~  213 (216)
                      ..+...+.
T Consensus       349 ~~h~~~v~  356 (464)
T 3v7d_B          349 QGHTALVG  356 (464)
T ss_dssp             CCCSSCEE
T ss_pred             eCCCCcEE
Confidence            66655443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=9.3e-29  Score=190.32  Aligned_cols=182  Identities=18%  Similarity=0.318  Sum_probs=154.4

Q ss_pred             CceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCce-------EEEEeCCCCcc----------------
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNL-------QCTVEGPRGGI----------------   59 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~-------~~~~~~~~~~~----------------   59 (216)
                      .+++..+.+|...|.+++|+|+++ +|++++.||.|++||+.++..       ...+..|...+                
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            567788999999999999999988 999999999999999987321       23444444332                


Q ss_pred             -cCcEEEEEECCCc---ceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCC-CceeEEeecccccccccceE
Q 043942           60 -EDSTVWMWNADRG---AYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWM  133 (216)
Q Consensus        60 -~~~~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~  133 (216)
                       .++.|++||++++   +.+..+..|...|++++|+|+++ ++++|+.|+.|++||+++ +..+..+..           
T Consensus       251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-----------  319 (430)
T 2xyi_A          251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-----------  319 (430)
T ss_dssp             ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-----------
T ss_pred             eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-----------
Confidence             7999999999976   57777888999999999999887 688999999999999997 455677765           


Q ss_pred             EEeeeecCeEEEEeCCCCc-EEEEecccCeE----------------------------EeeeCCEEEEEEecCCC-eEE
Q 043942          134 ICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV----------------------------DGHIDAIQSLSVSAIRE-SLV  183 (216)
Q Consensus       134 ~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i----------------------------~~~~~~i~~~~~~~~~~-~l~  183 (216)
                          |...|.+++|+|++. ++++++.|+.+                            .+|...|.+++|+|+++ +|+
T Consensus       320 ----h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~  395 (430)
T 2xyi_A          320 ----HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC  395 (430)
T ss_dssp             ----CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred             ----CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence                889999999999985 68889888876                            25677899999999999 899


Q ss_pred             EEeCCCcEEEEEccccc
Q 043942          184 SVSVDGTARVFEIAEFR  200 (216)
Q Consensus       184 s~~~d~~v~vw~~~~~~  200 (216)
                      +++.||.|++|++....
T Consensus       396 s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          396 SVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             EEETTSEEEEEEECHHH
T ss_pred             EEECCCCEEEeEccccc
Confidence            99999999999997643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-29  Score=207.75  Aligned_cols=179  Identities=22%  Similarity=0.309  Sum_probs=151.7

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC--CCceEEEEeCCCCcc------------------cCcEEEE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS--SRNLQCTVEGPRGGI------------------EDSTVWM   66 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~~------------------~~~~v~i   66 (216)
                      +..+.+|.+.|++++|+|++++|++|+.||.|++||+.  +++....+.+|...+                  .|+.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            45788999999999999999999999999999999998  446666666665544                  7899999


Q ss_pred             EECCCcc--eeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeec
Q 043942           67 WNADRGA--YLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        67 ~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      ||+++++  .+..+.+|...|++++|+|+  ++.+++|+.|+.|++||++++..  ...+..               |..
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~---------------~~~  146 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---------------HAI  146 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC---------------CSS
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec---------------CCC
Confidence            9999886  67778889999999999999  99999999999999999997743  233333               888


Q ss_pred             CeEEEEeCC-------------CCcEEEEecccCeE------------------EeeeCCEEEEEEecC---CCeEEEEe
Q 043942          141 GVTCLSWPG-------------TSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAI---RESLVSVS  186 (216)
Q Consensus       141 ~v~~~~~~~-------------~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~---~~~l~s~~  186 (216)
                      .|.+++|+|             ++.++++++.||.+                  .+|..+|.+++|+|+   +++|++++
T Consensus       147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            999999999             58999999999987                  457889999999999   89999999


Q ss_pred             CCCcEEEEEccccc
Q 043942          187 VDGTARVFEIAEFR  200 (216)
Q Consensus       187 ~d~~v~vw~~~~~~  200 (216)
                      .||.|++||+.+++
T Consensus       227 ~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          227 QDRTCIIWTQDNEQ  240 (753)
T ss_dssp             SSSCEEEEEESSSS
T ss_pred             cCCEEEEecCCCCC
Confidence            99999999998864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.4e-28  Score=185.80  Aligned_cols=196  Identities=18%  Similarity=0.255  Sum_probs=155.9

Q ss_pred             ccccceEEEEEccCCC-EEEEEcCCCcEEEEEC----CCCc------eEEEEeC----------CCCcc-----------
Q 043942           12 GHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDT----SSRN------LQCTVEG----------PRGGI-----------   59 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~----~~~~------~~~~~~~----------~~~~~-----------   59 (216)
                      .|.+.|.+++|+|+++ +|++++.|+.|++||+    .+++      ....+..          |...+           
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            4568999999999999 9999999999999999    8877      4444444          23222           


Q ss_pred             -----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc--------
Q 043942           60 -----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE--------  126 (216)
Q Consensus        60 -----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~--------  126 (216)
                           .++.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+......        
T Consensus       123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  201 (425)
T 1r5m_A          123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN  201 (425)
T ss_dssp             EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred             EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence                 789999999 667888889999999999999999999999999999999999998877766542211        


Q ss_pred             ------------ccc---------------------cceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------
Q 043942          127 ------------FSL---------------------NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------  163 (216)
Q Consensus       127 ------------~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------  163 (216)
                                  +.+                     ........|...+.+++|+|+++++++++.|+.+          
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  281 (425)
T 1r5m_A          202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS  281 (425)
T ss_dssp             ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred             ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence                        000                     1112223477889999999999999999999987          


Q ss_pred             ----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          164 ----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       164 ----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                          ..|...|.+++|+|++ ++++++.|+.|++||+.+++....+..+.
T Consensus       282 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  330 (425)
T 1r5m_A          282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG  330 (425)
T ss_dssp             SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence                4588899999999999 99999999999999999888776555443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.9e-28  Score=179.34  Aligned_cols=187  Identities=17%  Similarity=0.160  Sum_probs=162.2

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~   67 (216)
                      .++++++.+|.+.|.+++| |++++|++++.||.|++||+.+++....+..+...+                .++.+++|
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence            4678899999999999999 999999999999999999999998888887776654                78999999


Q ss_pred             ECCCc---ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942           68 NADRG---AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        68 d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      ++...   +.+..+.+|...|.+++|  +++.+++++.|+.|++||  .++....+..               |...+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~---------------~~~~v~~  147 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA---------------HNASVWD  147 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC---------------CSSCEEE
T ss_pred             EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc---------------CCCceeE
Confidence            98753   567778899999999999  577999999999999999  5666666665               8899999


Q ss_pred             EEeCC-CCcEEEEecccCeE------------E-eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942          145 LSWPG-TSKYLVTGCVDGKV------------D-GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF  210 (216)
Q Consensus       145 ~~~~~-~~~~l~~~~~~~~i------------~-~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~  210 (216)
                      +.|.| ++.++++++.|+.+            . .|...+.+++|+|++. +++++.|+.|++||+++++....+..+..
T Consensus       148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~  226 (313)
T 3odt_A          148 AKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES  226 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc
Confidence            99988 99999999999988            2 2788999999999998 89999999999999999887776655544


Q ss_pred             e
Q 043942          211 K  211 (216)
Q Consensus       211 ~  211 (216)
                      .
T Consensus       227 ~  227 (313)
T 3odt_A          227 F  227 (313)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.8e-28  Score=188.89  Aligned_cols=176  Identities=21%  Similarity=0.438  Sum_probs=158.6

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMW   67 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~   67 (216)
                      ++++.+..+.+|.+.|.+++|  ++++|++|+.||.|++||+.+++....+..|...+              .|+.|++|
T Consensus       161 ~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw  238 (435)
T 1p22_A          161 NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW  238 (435)
T ss_dssp             SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred             CCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEE
Confidence            567888999999999999999  78899999999999999999999999998887755              89999999


Q ss_pred             ECCCccee---eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942           68 NADRGAYL---NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC  144 (216)
Q Consensus        68 d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (216)
                      |++++...   ..+.+|...|.+++|  +++++++|+.|+.|++||+++++.+..+..               |...+.+
T Consensus       239 d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------------~~~~v~~  301 (435)
T 1p22_A          239 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG---------------HKRGIAC  301 (435)
T ss_dssp             ECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC---------------CSSCEEE
T ss_pred             eCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC---------------CCCcEEE
Confidence            99987655   667889999999999  688999999999999999999999888876               8889999


Q ss_pred             EEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          145 LSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       145 ~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +.+  ++.++++++.||.+              .+|...|.+++|  ++++|++++.||.|++||+.+++
T Consensus       302 ~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          302 LQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             EEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence            998  46899999999988              568889999998  78899999999999999998765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=9.7e-29  Score=190.49  Aligned_cols=186  Identities=17%  Similarity=0.270  Sum_probs=145.3

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-----------eEEEEeCCC------------Ccc----------
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-----------LQCTVEGPR------------GGI----------   59 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----------~~~~~~~~~------------~~~----------   59 (216)
                      |.+.|.+++|+|+|++||+|+.||.|++||+.+++           ....+.+|.            ..+          
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            57899999999999999999999999999999876           467777776            222          


Q ss_pred             --------cCcEEEEEECCCccee---------------------------------------ee-eeccCCCeeEEEEc
Q 043942           60 --------EDSTVWMWNADRGAYL---------------------------------------NM-FSGHGSGLTCGDFT   91 (216)
Q Consensus        60 --------~~~~v~i~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~   91 (216)
                              .|+.|++||+.++...                                       .. ..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence                    7899999999764432                                       12 35799999999999


Q ss_pred             CCCcEEEEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccCeE------
Q 043942           92 TDGKTICTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDGKV------  163 (216)
Q Consensus        92 ~~~~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~i------  163 (216)
                      |++++|++| .|+.|++||+++. +....+......        ..+|...|.+++|+|++ +++++++.||.+      
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPAN--------MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSS--------GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccc--------ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            999999999 7999999999943 333332111000        01278899999999998 999999999987      


Q ss_pred             ------------EeeeC------------CEEEEEEecCCCeEEEEeCCCcEEEEEccc-ccceeecCCc
Q 043942          164 ------------DGHID------------AIQSLSVSAIRESLVSVSVDGTARVFEIAE-FRRATKAPSY  208 (216)
Q Consensus       164 ------------~~~~~------------~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~-~~~~~~~~~~  208 (216)
                                  ..|..            .|.+++|+|++++|++++. +.|++||++. ++....+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence                        22332            8999999999999999998 9999999987 6655544433

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-29  Score=192.93  Aligned_cols=183  Identities=14%  Similarity=0.242  Sum_probs=156.3

Q ss_pred             ceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCc------eEEEE---eCCCCcc---------------
Q 043942            5 DWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRN------LQCTV---EGPRGGI---------------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~------~~~~~---~~~~~~~---------------   59 (216)
                      +.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++      ....+   ..+...+               
T Consensus       104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  183 (416)
T 2pm9_A          104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS  183 (416)
T ss_dssp             CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred             cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence            478889999999999999998 8999999999999999998876      22222   2222222               


Q ss_pred             --cCcEEEEEECCCcceeeeeecc------CCCeeEEEEcCCC-cEEEEecCCC---eEEEEeCCCC-ceeEEee-cccc
Q 043942           60 --EDSTVWMWNADRGAYLNMFSGH------GSGLTCGDFTTDG-KTICTGSDNA---TLSIWNPKGG-ENFHAIR-RSSL  125 (216)
Q Consensus        60 --~~~~v~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~t~~~d~---~i~~wd~~~~-~~~~~~~-~~~~  125 (216)
                        .++.|++||+++++.+..+..+      ...+.+++|+|++ .++++++.|+   .|++||++++ .....+. .   
T Consensus       184 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~---  260 (416)
T 2pm9_A          184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG---  260 (416)
T ss_dssp             ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC---
T ss_pred             EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC---
Confidence              7899999999999988888776      7889999999997 6899999998   9999999986 4455554 4   


Q ss_pred             cccccceEEEeeeecCeEEEEeCC-CCcEEEEecccCeE--------------EeeeCCEEEEEEecCC-CeEEEEeCCC
Q 043942          126 EFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIR-ESLVSVSVDG  189 (216)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~-~~l~s~~~d~  189 (216)
                                  |...|.+++|+| ++.+|++++.|+.+              ..|...|.+++|+|++ .+|++++.|+
T Consensus       261 ------------~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~  328 (416)
T 2pm9_A          261 ------------HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN  328 (416)
T ss_dssp             ------------CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred             ------------ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence                        889999999999 99999999999988              5678899999999999 8999999999


Q ss_pred             cEEEEEcccccce
Q 043942          190 TARVFEIAEFRRA  202 (216)
Q Consensus       190 ~v~vw~~~~~~~~  202 (216)
                      .|++|++.+.+..
T Consensus       329 ~i~iw~~~~~~~~  341 (416)
T 2pm9_A          329 KIEVQTLQNLTNT  341 (416)
T ss_dssp             EEEEEESCCCCCS
T ss_pred             cEEEEEccCCCCC
Confidence            9999999886643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.4e-28  Score=176.61  Aligned_cols=188  Identities=15%  Similarity=0.254  Sum_probs=159.5

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC---ceEEEEeCCCCcc--------------cCcEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR---NLQCTVEGPRGGI--------------EDSTV   64 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~--------------~~~~v   64 (216)
                      ++++....+..|...|.+++|+|++++|++++.|+.|++|++...   +....+..|...+              .++.|
T Consensus        47 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i  126 (313)
T 3odt_A           47 DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTA  126 (313)
T ss_dssp             SSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             CCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCE
Confidence            456778888899999999999999999999999999999998764   5566666666554              79999


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      ++||  .++....+..|...+.+++|.| +++.+++++.|+.|++||  .++....+..              .+...+.
T Consensus       127 ~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~--------------~~~~~i~  188 (313)
T 3odt_A          127 KVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSG--------------IHNDVVR  188 (313)
T ss_dssp             EEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECS--------------SCSSCEE
T ss_pred             EEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEec--------------cCcccEE
Confidence            9999  6777888889999999999988 899999999999999999  3444444432              1678899


Q ss_pred             EEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          144 CLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      +++|+|++. +++++.++.+              ..|...|.+++|+|++ .|++++.||.|++||+.+++....+..+.
T Consensus       189 ~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          189 HLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             EEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred             EEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence            999999998 8899999988              5688999999999999 68899999999999999988776665544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=2.5e-28  Score=194.93  Aligned_cols=185  Identities=20%  Similarity=0.218  Sum_probs=163.1

Q ss_pred             ceeEEeeccccc-eEEEEEcc--CCCEEEEEcCCCcEEEEECCCC--------ceEEEEeCCCCcc--------------
Q 043942            5 DWASEILGHKDS-FSSLAFST--DGQLLASGGFHGLVQNRDTSSR--------NLQCTVEGPRGGI--------------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~-v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~~~~--------------   59 (216)
                      +.+..+.+|.+. |.+++|+|  ++++|++++.||.|++||+.++        +....+..+...+              
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            788899999999 99999999  9999999999999999999754        6666777666554              


Q ss_pred             --cC----cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccce
Q 043942           60 --ED----STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYW  132 (216)
Q Consensus        60 --~~----~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  132 (216)
                        .+    +.|++||  +++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++....+..          
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----------  201 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----------  201 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----------
T ss_pred             eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----------
Confidence              22    6788887  5678888999999999999999998 899999999999999999998888876          


Q ss_pred             EEEeeeec---CeEEEEeCCC-CcEEEEecccCeE-------------E-----eeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942          133 MICTSLYD---GVTCLSWPGT-SKYLVTGCVDGKV-------------D-----GHIDAIQSLSVSAIRESLVSVSVDGT  190 (216)
Q Consensus       133 ~~~~~~~~---~v~~~~~~~~-~~~l~~~~~~~~i-------------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~  190 (216)
                           |..   .|.+++|+|+ ++++++++.|+.+             .     .|...|.+++|+ ++++|++++.|+.
T Consensus       202 -----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~  275 (615)
T 1pgu_A          202 -----HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT  275 (615)
T ss_dssp             -----SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE
T ss_pred             -----cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc
Confidence                 777   8999999999 9999999999987             2     788999999999 9999999999999


Q ss_pred             EEEEEcccccceeecCC
Q 043942          191 ARVFEIAEFRRATKAPS  207 (216)
Q Consensus       191 v~vw~~~~~~~~~~~~~  207 (216)
                      |++||+.+++....+..
T Consensus       276 i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          276 IRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEcC
Confidence            99999998877665443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=5.1e-28  Score=186.18  Aligned_cols=176  Identities=20%  Similarity=0.319  Sum_probs=150.7

Q ss_pred             EEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCC----------CceEEEEeCCCCcc-----------------
Q 043942            8 SEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSS----------RNLQCTVEGPRGGI-----------------   59 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~----------~~~~~~~~~~~~~~-----------------   59 (216)
                      .....|.+.|++++|+|+ +++|++++.||.|++||+.+          .+....+..|...+                 
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445679999999999997 68999999999999999986          56677777766544                 


Q ss_pred             cCcEEEEEECCCcce-------eeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCC---ceeEEeeccccccc
Q 043942           60 EDSTVWMWNADRGAY-------LNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGG---ENFHAIRRSSLEFS  128 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~  128 (216)
                      .++.|++||++++..       ...+.+|...|.+++|+| ++..+++++.|+.|++||++++   +....+..      
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~------  275 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA------  275 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC------
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec------
Confidence            789999999987322       455678999999999999 6789999999999999999987   45555554      


Q ss_pred             ccceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE---------------EeeeCCEEEEEEecCCC-eEEEEeCCCcE
Q 043942          129 LNYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV---------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTA  191 (216)
Q Consensus       129 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v  191 (216)
                               |...|++++|+|++. ++++++.||.+               ..|...|.+++|+|+++ +|++++.|+.|
T Consensus       276 ---------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i  346 (430)
T 2xyi_A          276 ---------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL  346 (430)
T ss_dssp             ---------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred             ---------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence                     889999999999987 68899999988               56889999999999995 68899999999


Q ss_pred             EEEEccc
Q 043942          192 RVFEIAE  198 (216)
Q Consensus       192 ~vw~~~~  198 (216)
                      ++||+..
T Consensus       347 ~iwd~~~  353 (430)
T 2xyi_A          347 HVWDLSK  353 (430)
T ss_dssp             EEEEGGG
T ss_pred             EEEeCCC
Confidence            9999987

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=5.9e-28  Score=182.93  Aligned_cols=186  Identities=13%  Similarity=0.110  Sum_probs=150.5

Q ss_pred             CCCceeEEee--ccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCC---Ccc----------------
Q 043942            2 NQGDWASEIL--GHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR---GGI----------------   59 (216)
Q Consensus         2 ~~g~~~~~~~--~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---~~~----------------   59 (216)
                      .+++....+.  +|...|.+++|+| ++++|++++.|+.|++||+.+ +....+..+.   ..+                
T Consensus       104 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  182 (383)
T 3ei3_B          104 DVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD  182 (383)
T ss_dssp             TSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred             CCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence            3455555554  6999999999999 779999999999999999986 4455554433   211                


Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCC----CceeEEeecccccccccceEE
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKG----GENFHAIRRSSLEFSLNYWMI  134 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~  134 (216)
                      .++.|++||+ +++++..+.+|...|.+++|+|+++ ++++++.|+.|++||+++    +..+..+.             
T Consensus       183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------------  248 (383)
T 3ei3_B          183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-------------  248 (383)
T ss_dssp             TTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-------------
T ss_pred             CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-------------
Confidence            7899999999 5778888999999999999999999 999999999999999997    44444442             


Q ss_pred             EeeeecCeEEEEeCC-CCcEEEEecccCeE--------------Eeee-----------------CCEEEEEEecCCCeE
Q 043942          135 CTSLYDGVTCLSWPG-TSKYLVTGCVDGKV--------------DGHI-----------------DAIQSLSVSAIRESL  182 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i--------------~~~~-----------------~~i~~~~~~~~~~~l  182 (216)
                         |...|.+++|+| ++.+|++++.|+.+              ..|.                 ..+..++|+|++++ 
T Consensus       249 ---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-  324 (383)
T 3ei3_B          249 ---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-  324 (383)
T ss_dssp             ---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred             ---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence               889999999999 99999999999988              2221                 34455677777777 


Q ss_pred             EEEeCCCcEEEEEcccccceeecCC
Q 043942          183 VSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       183 ~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                       +++.|+.|++||+.+++....+..
T Consensus       325 -s~s~d~~i~iwd~~~~~~~~~l~~  348 (383)
T 3ei3_B          325 -LLNDKRTIDIYDANSGGLVHQLRD  348 (383)
T ss_dssp             -CTTCCCCEEEEETTTCCEEEEECB
T ss_pred             -ccCCCCeEEEEecCCCceeeeecC
Confidence             778999999999999887766543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=2.3e-28  Score=183.45  Aligned_cols=176  Identities=12%  Similarity=0.143  Sum_probs=151.7

Q ss_pred             EeeccccceEEEEEccC----CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-----cc--------------------
Q 043942            9 EILGHKDSFSSLAFSTD----GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-----GI--------------------   59 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~~--------------------   59 (216)
                      ...+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+..+..     .+                    
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34489999999999984    45666666678999999998877665543221     11                    


Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEe---ecccccccccceEEE
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAI---RRSSLEFSLNYWMIC  135 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~  135 (216)
                      .|+.|++||+++++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+++++....+   ..             
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------  159 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG-------------  159 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS-------------
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc-------------
Confidence            789999999999999999999999999999999 9999999999999999999999888877   33             


Q ss_pred             eeeecCeEEEEeCCCCcEEEEecccCeE--------------Ee----------------------------eeCCEEEE
Q 043942          136 TSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DG----------------------------HIDAIQSL  173 (216)
Q Consensus       136 ~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~----------------------------~~~~i~~~  173 (216)
                        |...|.+++|+|+++++++++.|+.+              ..                            |...|.++
T Consensus       160 --~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  237 (366)
T 3k26_A          160 --HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV  237 (366)
T ss_dssp             --CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred             --ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence              88999999999999999999999988              11                            88999999


Q ss_pred             EEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          174 SVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       174 ~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      +|+  +++|++++.|+.|++||+.+.+.
T Consensus       238 ~~~--~~~l~~~~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          238 RWL--GDLILSKSCENAIVCWKPGKMED  263 (366)
T ss_dssp             EEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred             EEc--CCEEEEEecCCEEEEEeCCCccc
Confidence            998  77999999999999999987654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=204.83  Aligned_cols=188  Identities=12%  Similarity=0.089  Sum_probs=149.4

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCcce
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAY   74 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~   74 (216)
                      ..+|.+.|++++|+|++++||+|+.||.|++|+....+....+. +...+               .|++|++||+++++.
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcE
Confidence            34799999999999999999999999999999998776544432 22111               799999999999998


Q ss_pred             eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC-CcE
Q 043942           75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKY  153 (216)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~  153 (216)
                      +..+. |.+.|++++|+|+++++++|+.||.|++||+++++.. .+........   .....+|...|.+++|+|+ +..
T Consensus        92 ~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~---~~~~~~h~~~V~sl~~sp~~~~~  166 (902)
T 2oaj_A           92 LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKS---SFFPAARLSPIVSIQWNPRDIGT  166 (902)
T ss_dssp             EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHH---HTCSSSCCCCCCEEEEETTEEEE
T ss_pred             EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccccc---ccccccCCCCeEEEEEccCCCCE
Confidence            88886 7788999999999999999999999999999987653 2211000000   0001137889999999996 578


Q ss_pred             EEEecccCeE-------------Eee------------------eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          154 LVTGCVDGKV-------------DGH------------------IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       154 l~~~~~~~~i-------------~~~------------------~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      +++++.|+.+             ..|                  ...|.+++|+|+|++|++++.||.|++||+++++.+
T Consensus       167 l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          167 VLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            9999999876             112                  367999999999999999999999999999887764


Q ss_pred             e
Q 043942          203 T  203 (216)
Q Consensus       203 ~  203 (216)
                      .
T Consensus       247 ~  247 (902)
T 2oaj_A          247 M  247 (902)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=190.00  Aligned_cols=193  Identities=11%  Similarity=0.129  Sum_probs=146.8

Q ss_pred             eeEEeeccc------------cceEEEEEccCC--CEEEEEcCCCcEEEEECCCCceE----------------------
Q 043942            6 WASEILGHK------------DSFSSLAFSTDG--QLLASGGFHGLVQNRDTSSRNLQ----------------------   49 (216)
Q Consensus         6 ~~~~~~~h~------------~~v~~~~~s~~~--~~l~s~~~d~~v~vwd~~~~~~~----------------------   49 (216)
                      +...+++|.            +.|.+++|+|++  .+|++++.|+.|++||+.+++..                      
T Consensus        73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  152 (447)
T 3dw8_B           73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL  152 (447)
T ss_dssp             EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred             EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence            577889998            889999999998  79999999999999998764432                      


Q ss_pred             -----------------EEE-eCCCCcc---------------cCcEEEEEECCC-cceee-------eeeccCCCeeEE
Q 043942           50 -----------------CTV-EGPRGGI---------------EDSTVWMWNADR-GAYLN-------MFSGHGSGLTCG   88 (216)
Q Consensus        50 -----------------~~~-~~~~~~~---------------~~~~v~i~d~~~-~~~~~-------~~~~~~~~v~~~   88 (216)
                                       ..+ ..|...+               .|+.|++||+++ ++.+.       .+.+|...|.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  232 (447)
T 3dw8_B          153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA  232 (447)
T ss_dssp             CCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE
T ss_pred             EeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEE
Confidence                             111 3344333               799999999994 44443       356899999999


Q ss_pred             EEcCCC-cEEEEecCCCeEEEEeCCCCce----eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942           89 DFTTDG-KTICTGSDNATLSIWNPKGGEN----FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus        89 ~~~~~~-~~l~t~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      +|+|++ ++|++|+.|+.|++||+++++.    ...+........   ......+...|.+++|+|++++|++++. +.+
T Consensus       233 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v  308 (447)
T 3dw8_B          233 EFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN---RSFFSEIISSISDVKFSHSGRYMMTRDY-LSV  308 (447)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEE
T ss_pred             EECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc---cccccccCceEEEEEECCCCCEEEEeeC-CeE
Confidence            999998 9999999999999999998876    566654100000   0000002238999999999999999988 877


Q ss_pred             ---------------EeeeCC---------------EEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          164 ---------------DGHIDA---------------IQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       164 ---------------~~~~~~---------------i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                                     ..|...               +..++|+|++++|++++.||.|++||+.+++..
T Consensus       309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence                           233211               234899999999999999999999999987654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-28  Score=201.63  Aligned_cols=183  Identities=15%  Similarity=0.210  Sum_probs=156.0

Q ss_pred             CCceeEEeeccccceEEEEEccC--CCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------------c
Q 043942            3 QGDWASEILGHKDSFSSLAFSTD--GQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------------E   60 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------------~   60 (216)
                      +++.+.++.+|.++|.+++|+|+  +++|++|+.||.|++||+.+++  ....+..|...+                  .
T Consensus        42 ~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~  121 (753)
T 3jro_A           42 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS  121 (753)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC
Confidence            45677889999999999999988  9999999999999999999886  555555554433                  7


Q ss_pred             CcEEEEEECCCc--ceeeeeeccCCCeeEEEEcC-------------CCcEEEEecCCCeEEEEeCCCCc----eeEEee
Q 043942           61 DSTVWMWNADRG--AYLNMFSGHGSGLTCGDFTT-------------DGKTICTGSDNATLSIWNPKGGE----NFHAIR  121 (216)
Q Consensus        61 ~~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~-------------~~~~l~t~~~d~~i~~wd~~~~~----~~~~~~  121 (216)
                      |+.|++||++++  .....+.+|...|.+++|+|             +++.+++|+.||.|++||++++.    ....+.
T Consensus       122 dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~  201 (753)
T 3jro_A          122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE  201 (753)
T ss_dssp             TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred             CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec
Confidence            899999999876  34456678999999999999             58999999999999999998774    333444


Q ss_pred             cccccccccceEEEeeeecCeEEEEeCCC---CcEEEEecccCeE-------------------EeeeCCEEEEEEecCC
Q 043942          122 RSSLEFSLNYWMICTSLYDGVTCLSWPGT---SKYLVTGCVDGKV-------------------DGHIDAIQSLSVSAIR  179 (216)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~i-------------------~~~~~~i~~~~~~~~~  179 (216)
                      .               |...|.+++|+|+   +.++++++.||.+                   ..|...|++++|+|++
T Consensus       202 ~---------------h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg  266 (753)
T 3jro_A          202 G---------------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG  266 (753)
T ss_dssp             C---------------CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT
T ss_pred             C---------------CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC
Confidence            3               8899999999999   8999999999987                   3377889999999999


Q ss_pred             CeEEEEeCCCcEEEEEccccc
Q 043942          180 ESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       180 ~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ++|++++.||.|++|++....
T Consensus       267 ~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          267 NVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CCEEEECSSSCEECCBCCSSS
T ss_pred             CEEEEEcCCCEEEEEecCCCC
Confidence            999999999999999998543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=3.2e-27  Score=182.38  Aligned_cols=184  Identities=19%  Similarity=0.409  Sum_probs=164.4

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWM   66 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i   66 (216)
                      +++++.+.++.+|.+.|.+++|+  +++|++++.|+.|++||+.+++....+..|...+              .|+.|++
T Consensus       146 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~  223 (445)
T 2ovr_B          146 AVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV  223 (445)
T ss_dssp             TTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             CCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEE
Confidence            35788899999999999999998  5799999999999999999999999998887765              7999999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      ||+++++.+..+.+|...|.+++|  +++.+++++.|+.|++||+++++.+..+..               |...+.++.
T Consensus       224 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~v~~~~  286 (445)
T 2ovr_B          224 WDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG---------------HTNRVYSLQ  286 (445)
T ss_dssp             EESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC---------------CSSCEEEEE
T ss_pred             EECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC---------------CCCceEEEE
Confidence            999999999999999999999999  688999999999999999999998888876               889999999


Q ss_pred             eCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          147 WPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      |  ++.++++++.|+.+              .+|...+.++.+  ++++|++++.||.|++||+.+++....+..
T Consensus       287 ~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          287 F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             E--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             E--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence            9  78999999999988              466777877776  567999999999999999998887766543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=2.3e-27  Score=183.13  Aligned_cols=183  Identities=25%  Similarity=0.417  Sum_probs=161.3

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADR   71 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~   71 (216)
                      ....+.+|.+.|.. ++++++++|++|+.||.|++||+.+++....+.+|...+              .|++|++||+++
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  188 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET  188 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCc
Confidence            46778999987533 355578999999999999999999999999998888766              899999999999


Q ss_pred             cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942           72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS  151 (216)
Q Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  151 (216)
                      ++.+..+.+|...|.+++|+  ++.+++|+.|+.|++||+.+++.+..+..               |...+.++.|  ++
T Consensus       189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---------------~~~~v~~~~~--~~  249 (445)
T 2ovr_B          189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMG---------------HVAAVRCVQY--DG  249 (445)
T ss_dssp             TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEEC---------------CSSCEEEEEE--CS
T ss_pred             CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcC---------------CcccEEEEEE--CC
Confidence            99999999999999999996  56899999999999999999998888876               8899999999  68


Q ss_pred             cEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942          152 KYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF  210 (216)
Q Consensus       152 ~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~  210 (216)
                      .++++++.|+.+              .+|...|.+++|  +++++++++.|+.|++||+++++....+..+..
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  320 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS  320 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc
Confidence            899999999988              467889999999  889999999999999999999887776655543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=9.7e-28  Score=178.80  Aligned_cols=188  Identities=13%  Similarity=0.132  Sum_probs=156.6

Q ss_pred             eEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEEC-CCCceEEEEeC--CCCcc---------------cCcEEEEE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDT-SSRNLQCTVEG--PRGGI---------------EDSTVWMW   67 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~-~~~~~~~~~~~--~~~~~---------------~~~~v~i~   67 (216)
                      ...+.+|...|.+++|+|+++ +|++++.|+.|++||+ .+++. ..+..  |...+               .|+.|++|
T Consensus        49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iw  127 (342)
T 1yfq_A           49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVI  127 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred             ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEE
Confidence            456668999999999999999 9999999999999999 76654 44444  44433               79999999


Q ss_pred             ECCC---------cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-Ccee--EEeecccccccccceEEE
Q 043942           68 NADR---------GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-GENF--HAIRRSSLEFSLNYWMIC  135 (216)
Q Consensus        68 d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~~~~--~~~~~~~~~~~~~~~~~~  135 (216)
                      |+++         ++++..+. |...+.+++|+|++  +++++.|+.|++||+++ +...  .....             
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------------  191 (342)
T 1yfq_A          128 DPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESG-------------  191 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECS-------------
T ss_pred             cccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecC-------------
Confidence            9998         77777777 88999999999887  99999999999999998 5432  22222             


Q ss_pred             eeeecCeEEEEeCC-CCcEEEEecccCeE--------------------EeeeC---------CEEEEEEecCCCeEEEE
Q 043942          136 TSLYDGVTCLSWPG-TSKYLVTGCVDGKV--------------------DGHID---------AIQSLSVSAIRESLVSV  185 (216)
Q Consensus       136 ~~~~~~v~~~~~~~-~~~~l~~~~~~~~i--------------------~~~~~---------~i~~~~~~~~~~~l~s~  185 (216)
                        +...+.+++|+| +++++++++.+|.+                    ..|..         .|.+++|+|++++|+++
T Consensus       192 --~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  269 (342)
T 1yfq_A          192 --LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             --CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             --CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence              678899999999 99999999999877                    12333         89999999999999999


Q ss_pred             eCCCcEEEEEcccccceeecCCc-ceeEE
Q 043942          186 SVDGTARVFEIAEFRRATKAPSY-SFKLF  213 (216)
Q Consensus       186 ~~d~~v~vw~~~~~~~~~~~~~~-~~~~~  213 (216)
                      +.||.|++||+.+++....+..+ ...+.
T Consensus       270 ~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  298 (342)
T 1yfq_A          270 GSDGIISCWNLQTRKKIKNFAKFNEDSVV  298 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEECCCCSSSEEE
T ss_pred             cCCceEEEEcCccHhHhhhhhcccCCCce
Confidence            99999999999999888888776 55443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.2e-27  Score=184.34  Aligned_cols=180  Identities=21%  Similarity=0.420  Sum_probs=153.4

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE---EEEeCCCCcc--------------cCcE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ---CTVEGPRGGI--------------EDST   63 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~---~~~~~~~~~~--------------~~~~   63 (216)
                      +++++.+.++.+|...|.+++|++  +++++++.|+.|++||+.+++..   ..+..|...+              .|+.
T Consensus       200 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~  277 (435)
T 1p22_A          200 VNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT  277 (435)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSE
T ss_pred             CCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCe
Confidence            357888999999999999999974  59999999999999999987655   4555665544              7999


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      |++||+++++.+..+.+|...|.+++|+  ++++++|+.|+.|++||+++++.+..+..               |...|.
T Consensus       278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---------------h~~~v~  340 (435)
T 1p22_A          278 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG---------------HEELVR  340 (435)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC---------------CSSCEE
T ss_pred             EEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeC---------------CcCcEE
Confidence            9999999999999999999999999994  67999999999999999999999888876               889999


Q ss_pred             EEEeCCCCcEEEEecccCeE-----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          144 CLSWPGTSKYLVTGCVDGKV-----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~~~~i-----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +++|  ++.++++++.||.+                       .+|...|.+++|  ++++|++++.||.|++||+.+..
T Consensus       341 ~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          341 CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             EEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence            9999  78899999999987                       357788999999  78899999999999999998866


Q ss_pred             cee
Q 043942          201 RAT  203 (216)
Q Consensus       201 ~~~  203 (216)
                      ...
T Consensus       417 ~~~  419 (435)
T 1p22_A          417 AAQ  419 (435)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.3e-27  Score=180.38  Aligned_cols=169  Identities=15%  Similarity=0.005  Sum_probs=145.2

Q ss_pred             ccccceEEEEEccCCCEE-EEEcCCCcEEEEECC--CCceEEEEeC--CCCcc----------------cCcEEEEEECC
Q 043942           12 GHKDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTS--SRNLQCTVEG--PRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~--~~~~~~~~~~--~~~~~----------------~~~~v~i~d~~   70 (216)
                      +|.+.|.+++|+|++++| ++++.|+.|++||+.  +++....+..  +...+                .++.+++|++.
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN  179 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence            456689999999999996 899999999999999  8887777652  22222                78999999998


Q ss_pred             Ccceee----eeeccCCCeeEEEEcCC---CcEEEEecCCCeEEEEeCCCCceeEEe-ecccccccccceEEEeeeecCe
Q 043942           71 RGAYLN----MFSGHGSGLTCGDFTTD---GKTICTGSDNATLSIWNPKGGENFHAI-RRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        71 ~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~t~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      ++....    .+.+|...|++++|+|+   +++|++++.|+.|++||+++++.+..+ ..               |...|
T Consensus       180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---------------h~~~v  244 (450)
T 2vdu_B          180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG---------------HKHFV  244 (450)
T ss_dssp             SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC---------------CSSCE
T ss_pred             CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC---------------CCCce
Confidence            876544    77889999999999999   999999999999999999998877764 34               88999


Q ss_pred             EEEEeCCCCcEEEEecccCeE--------------E-------------------------eeeCCEEEEEEecCCCeEE
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV--------------D-------------------------GHIDAIQSLSVSAIRESLV  183 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i--------------~-------------------------~~~~~i~~~~~~~~~~~l~  183 (216)
                      .+++|+ ++++|++++.|+.+              .                         .....|.+++|+|++++|+
T Consensus       245 ~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  323 (450)
T 2vdu_B          245 SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA  323 (450)
T ss_dssp             EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE
T ss_pred             EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE
Confidence            999999 99999999999988              1                         1234689999999999999


Q ss_pred             EEe-CCCcEEEEEc
Q 043942          184 SVS-VDGTARVFEI  196 (216)
Q Consensus       184 s~~-~d~~v~vw~~  196 (216)
                      +++ .|+.|++|++
T Consensus       324 ~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          324 FFVEATKCIIILEM  337 (450)
T ss_dssp             EEETTCSEEEEEEE
T ss_pred             EEECCCCeEEEEEe
Confidence            998 8999999999

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1e-27  Score=182.58  Aligned_cols=190  Identities=12%  Similarity=0.079  Sum_probs=129.0

Q ss_pred             EEeeccccceEEEEEcc--------CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCc
Q 043942            8 SEILGHKDSFSSLAFST--------DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDS   62 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~--------~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~   62 (216)
                      ..+.+|.+.|++++|+|        |+++||+++.|++|++||+.++.....+..+...+                 .|+
T Consensus       130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~  209 (393)
T 4gq1_A          130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNG  209 (393)
T ss_dssp             CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence            34678999999999998        78999999999999999998887776665555443                 899


Q ss_pred             EEEEEECCCcceeee-------------------------eeccCCCeeEEEEc-CCCcEEEEecCCCeEEEEeCCCCce
Q 043942           63 TVWMWNADRGAYLNM-------------------------FSGHGSGLTCGDFT-TDGKTICTGSDNATLSIWNPKGGEN  116 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~-------------------------~~~~~~~v~~~~~~-~~~~~l~t~~~d~~i~~wd~~~~~~  116 (216)
                      +|++||+++++....                         ..+|...+.+++|. |+++.+++++.|+.+++||+..++.
T Consensus       210 ~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~  289 (393)
T 4gq1_A          210 NIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND  289 (393)
T ss_dssp             EEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred             EEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence            999999987654322                         23577789999986 7999999999999999999998776


Q ss_pred             eEEeeccccc-----ccccceEEEeeeecCeEEEEeCC-CCcEEEEecccCeE--------------EeeeCCEEEEEEe
Q 043942          117 FHAIRRSSLE-----FSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV--------------DGHIDAIQSLSVS  176 (216)
Q Consensus       117 ~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~  176 (216)
                      ...+......     ..+.... ...+...+..+.+.+ ++.++++++.||.+              ..|..+|.+++|+
T Consensus       290 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs  368 (393)
T 4gq1_A          290 YNEISDSTMKLGPKNLLPNVQG-ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH  368 (393)
T ss_dssp             --------------CCSCSEEE-ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC
T ss_pred             CceEeeecCccccEEEcccccc-ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc
Confidence            5555431110     1111000 001112222233333 44567788889988              6778899999999


Q ss_pred             cCCCeEEEEeCCCcEEEEEcccc
Q 043942          177 AIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       177 ~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      |+|++||+++.+| +.+|.+...
T Consensus       369 pdG~~LA~as~~G-v~lvrL~gf  390 (393)
T 4gq1_A          369 QDGSHLAIATEGS-VLLTRLMGF  390 (393)
T ss_dssp             TTSSEEEEEESSE-EEEEEEGGG
T ss_pred             CCCCEEEEEeCCC-eEEEEEeCc
Confidence            9999999998665 667766543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=1.8e-26  Score=184.22  Aligned_cols=209  Identities=17%  Similarity=0.197  Sum_probs=158.5

Q ss_pred             CCCceeEEe-e---ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------
Q 043942            2 NQGDWASEI-L---GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------   59 (216)
Q Consensus         2 ~~g~~~~~~-~---~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------   59 (216)
                      ++++.+..+ .   +|...|.+++|+ ++++|++++.|+.|++||+.+++....+..+....                  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  315 (615)
T 1pgu_A          237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL  315 (615)
T ss_dssp             TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred             CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence            567888888 6   899999999999 99999999999999999999999988888763111                  


Q ss_pred             -cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC---------------------------------CcEEEEecCCCe
Q 043942           60 -EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD---------------------------------GKTICTGSDNAT  105 (216)
Q Consensus        60 -~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------------~~~l~t~~~d~~  105 (216)
                       .++.|++||+++++.+..+.+|...|.+++| |+                                 ++.+++++.|+.
T Consensus       316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~  394 (615)
T 1pgu_A          316 SLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDT  394 (615)
T ss_dssp             ETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred             ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCC
Confidence             7999999999998888888777777777666 54                                 566667777777


Q ss_pred             EEEEeCCCCc----------------------------------eeEEeecc---------------------ccc-ccc
Q 043942          106 LSIWNPKGGE----------------------------------NFHAIRRS---------------------SLE-FSL  129 (216)
Q Consensus       106 i~~wd~~~~~----------------------------------~~~~~~~~---------------------~~~-~~~  129 (216)
                      +++||+.+++                                  .+..+...                     .+. .+.
T Consensus       395 i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~  474 (615)
T 1pgu_A          395 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL  474 (615)
T ss_dssp             EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred             EEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEEC
Confidence            7777665321                                  11111100                     000 000


Q ss_pred             cc--e--EEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------Ee-eeCCEEEEEEec----------CCC
Q 043942          130 NY--W--MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DG-HIDAIQSLSVSA----------IRE  180 (216)
Q Consensus       130 ~~--~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~-~~~~i~~~~~~~----------~~~  180 (216)
                      ..  .  .....|...|.+++|+|++++|++++.|+.+              .+ |...|++++|+|          +++
T Consensus       475 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~  554 (615)
T 1pgu_A          475 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED  554 (615)
T ss_dssp             TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred             CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCC
Confidence            00  0  1123477889999999999999999999988              33 889999999999          999


Q ss_pred             eEEEEeCCCcEEEEEcccc-cceeecCCcceeE
Q 043942          181 SLVSVSVDGTARVFEIAEF-RRATKAPSYSFKL  212 (216)
Q Consensus       181 ~l~s~~~d~~v~vw~~~~~-~~~~~~~~~~~~~  212 (216)
                      +|++++.||.|++||+.++ +....+..|...+
T Consensus       555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v  587 (615)
T 1pgu_A          555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV  587 (615)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred             EEEEEcCCCcEEEEECCCCceechhhhcCccce
Confidence            9999999999999999987 5666666665443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=4.9e-27  Score=174.97  Aligned_cols=172  Identities=12%  Similarity=0.121  Sum_probs=142.6

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc---eEEEEeCCCCcc-----------------cCcEEEEE
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN---LQCTVEGPRGGI-----------------EDSTVWMW   67 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~-----------------~~~~v~i~   67 (216)
                      ....+|.+.|.+++|+|++++|++++.|+.|++||+.+++   ....+..+...+                 .++.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3446899999999999999999999999999999998876   223333333222                 68999999


Q ss_pred             EC-CCcceeeeeec--cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC---------CceeEEeecccccccccceEEE
Q 043942           68 NA-DRGAYLNMFSG--HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG---------GENFHAIRRSSLEFSLNYWMIC  135 (216)
Q Consensus        68 d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~  135 (216)
                      |+ ++++. ..+.+  |...|.+++|+| ++.+++++.|+.|++||+++         ++.+..+.              
T Consensus        85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--------------  148 (342)
T 1yfq_A           85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--------------  148 (342)
T ss_dssp             CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--------------
T ss_pred             EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--------------
Confidence            99 77655 67788  999999999999 99999999999999999986         44333332              


Q ss_pred             eeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcc
Q 043942          136 TSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       136 ~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~  197 (216)
                        +...+.+++|+|++  +++++.++.+                 ..|...+.+++|+| +++++++++.||.+++|++.
T Consensus       149 --~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          149 --VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             --SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             --eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence              67889999999987  8888888777                 23556899999999 99999999999999999998


Q ss_pred             cc
Q 043942          198 EF  199 (216)
Q Consensus       198 ~~  199 (216)
                      ..
T Consensus       225 ~~  226 (342)
T 1yfq_A          225 DQ  226 (342)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=8.8e-27  Score=177.70  Aligned_cols=181  Identities=17%  Similarity=0.221  Sum_probs=152.5

Q ss_pred             ceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEE--eCCCCcc----------------cCcEEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTV--EGPRGGI----------------EDSTVW   65 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~~----------------~~~~v~   65 (216)
                      +++..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++....+  ..|...+                .|+.|+
T Consensus       122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  201 (402)
T 2aq5_A          122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR  201 (402)
T ss_dssp             SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEE
Confidence            5678899999999999999998 69999999999999999999999888  5666544                799999


Q ss_pred             EEECCCcceeeee-eccCCC-eeEEEEcCCCcEEEEe---cCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeee
Q 043942           66 MWNADRGAYLNMF-SGHGSG-LTCGDFTTDGKTICTG---SDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        66 i~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~t~---~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      +||+++++.+..+ .+|.+. +.++.|+|+++++++|   +.|+.|++||+++++. ......              .+.
T Consensus       202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~  267 (402)
T 2aq5_A          202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL--------------DTS  267 (402)
T ss_dssp             EEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC--------------CCC
T ss_pred             EEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec--------------cCC
Confidence            9999999998888 678775 8999999999999999   8999999999998764 332221              166


Q ss_pred             cCeEEEEeCCCCcEEEE-ecccCeE---------------Ee--eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          140 DGVTCLSWPGTSKYLVT-GCVDGKV---------------DG--HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~-~~~~~~i---------------~~--~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      ..+.+++|+|+++++++ ++.|+.+               ..  |..+|.+++|+|++.++++  .++.+++|++.+++.
T Consensus       268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            78999999999999864 5578877               22  3488999999999998874  467999999987543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=2.3e-26  Score=168.54  Aligned_cols=169  Identities=14%  Similarity=0.053  Sum_probs=120.9

Q ss_pred             ceEEEEEccC----CCEEEEEcC--------------------CCcEEEEEC-CCCceEEEEeCCCCcc-----------
Q 043942           16 SFSSLAFSTD----GQLLASGGF--------------------HGLVQNRDT-SSRNLQCTVEGPRGGI-----------   59 (216)
Q Consensus        16 ~v~~~~~s~~----~~~l~s~~~--------------------d~~v~vwd~-~~~~~~~~~~~~~~~~-----------   59 (216)
                      .|+.++++|+    ++++++++.                    |+.|++|++ .+++.+..+..|...+           
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~  192 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM  192 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence            5667777777    777776553                    889999999 4577776655554322           


Q ss_pred             --------cCcEEEEEECCCcceeeeeeccC---CCeeEEEEcCCCcEE------------EEecCCCeEEEEeCCCCce
Q 043942           60 --------EDSTVWMWNADRGAYLNMFSGHG---SGLTCGDFTTDGKTI------------CTGSDNATLSIWNPKGGEN  116 (216)
Q Consensus        60 --------~~~~v~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~t~~~d~~i~~wd~~~~~~  116 (216)
                              .|++|++||+++++.++++.+|.   ..+.+++|+|++.++            ++|+.|++|++||..+++.
T Consensus       193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~  272 (356)
T 2w18_A          193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS  272 (356)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred             CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence                    79999999999999999998654   367788999999876            5678999999999999988


Q ss_pred             eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEE-EEEEecCCCe
Q 043942          117 FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQ-SLSVSAIRES  181 (216)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~-~~~~~~~~~~  181 (216)
                      +..+....          ..+|...+.+..++  +.++++++.|+.|              .+|...+. .++|+|||++
T Consensus       273 l~v~~~~~----------p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~  340 (356)
T 2w18_A          273 VGVMLYCL----------PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH  340 (356)
T ss_dssp             EEEEEECC----------CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE
T ss_pred             EEEEEeec----------cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE
Confidence            76552100          00133334333333  7789999999988              35665554 5899999999


Q ss_pred             EEEEeCCCcEEEEEc
Q 043942          182 LVSVSVDGTARVFEI  196 (216)
Q Consensus       182 l~s~~~d~~v~vw~~  196 (216)
                      |++|+.|++|+|||+
T Consensus       341 LaSGS~D~TIklWd~  355 (356)
T 2w18_A          341 LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECTTSCEEEEEE
T ss_pred             EEEEECCCcEEEecC
Confidence            999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=173.44  Aligned_cols=191  Identities=13%  Similarity=0.082  Sum_probs=138.1

Q ss_pred             Ccee-EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEE
Q 043942            4 GDWA-SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTV   64 (216)
Q Consensus         4 g~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v   64 (216)
                      ++.+ ..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++...... |...+                  .|+.|
T Consensus        75 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i  153 (368)
T 3mmy_A           75 GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTL  153 (368)
T ss_dssp             SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred             CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence            3444 7888999999999999999999999999999999999987665332 33222                  78999


Q ss_pred             EEEECCCcceeeeeeccC-----------------------------------------CCeeEEEEcCCCcE----EEE
Q 043942           65 WMWNADRGAYLNMFSGHG-----------------------------------------SGLTCGDFTTDGKT----ICT   99 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~-----------------------------------------~~v~~~~~~~~~~~----l~t   99 (216)
                      ++||+++++.+..+..+.                                         ..+.++++.++...    +++
T Consensus       154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (368)
T 3mmy_A          154 KFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL  233 (368)
T ss_dssp             EEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence            999999887776665443                                         22334444433332    778


Q ss_pred             ecCCCeEEEEeCCCC---ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------
Q 043942          100 GSDNATLSIWNPKGG---ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------  163 (216)
Q Consensus       100 ~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------  163 (216)
                      ++.|+.|++||++..   .....+.......   .......+...|.+++|+|++++|++++.||.+             
T Consensus       234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~  310 (368)
T 3mmy_A          234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNG---TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT  310 (368)
T ss_dssp             EETTSEEEEEESSCSCHHHHSEEEECSEEC-------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ecCCCcEEEEecCCCCccccceeeeeeeccc---ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence            888888888888766   3344444311000   000001133379999999999999999999988             


Q ss_pred             -EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          164 -DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       164 -~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                       ..|..+|.+++|+|++++|++++.|+..+.|++.+
T Consensus       311 ~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          311 SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             CCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             ecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence             56788999999999999999999987666555443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-26  Score=173.36  Aligned_cols=170  Identities=9%  Similarity=0.002  Sum_probs=137.7

Q ss_pred             EEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-c------c----cCcEEEEEECC---------Ccceeeeee
Q 043942           20 LAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-G------I----EDSTVWMWNAD---------RGAYLNMFS   79 (216)
Q Consensus        20 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~------~----~~~~v~i~d~~---------~~~~~~~~~   79 (216)
                      ..+.+++++|++|+.||.|++||+.+++.+..+....- .      +    .|++|++|+..         +++.+..+.
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~  121 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIE  121 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence            34556888999999999999999999988777652110 0      1    68889998665         455444444


Q ss_pred             -ccCCCeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942           80 -GHGSGLTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT  156 (216)
Q Consensus        80 -~~~~~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  156 (216)
                       +|.+.|.+++|+|  +++++++++.|+.|++||+++++........              +...+.+++|+|++.++++
T Consensus       122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--------------~~~~i~~~~~~pdg~~las  187 (343)
T 3lrv_A          122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK--------------SDVEYSSGVLHKDSLLLAL  187 (343)
T ss_dssp             CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC--------------SSCCCCEEEECTTSCEEEE
T ss_pred             cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC--------------CCCceEEEEECCCCCEEEE
Confidence             5778899999999  9999999999999999999998886555321              4557999999999999999


Q ss_pred             ecccCeE---------------Ee-eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          157 GCVDGKV---------------DG-HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       157 ~~~~~~i---------------~~-~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      |+.||.+               .. |..+|.+++|+|++.+|++++ |+.|++||+++.+....
T Consensus       188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~  250 (343)
T 3lrv_A          188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA  250 (343)
T ss_dssp             ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS
T ss_pred             EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee
Confidence            9999988               33 889999999999999999999 55999999998776543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.95  E-value=1.6e-25  Score=184.27  Aligned_cols=188  Identities=18%  Similarity=0.239  Sum_probs=161.5

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcc-----------------cCc
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGI-----------------EDS   62 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~-----------------~~~   62 (216)
                      +.+++.+.++.+|.+.|.+++|+|++++|++++.|+.|++||+.++ .....+..|...+                 .++
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence            3578889999999999999999999999999999999999999887 5666666665543                 789


Q ss_pred             EEEEEECCCcceeeeeeccC-CCeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942           63 TVWMWNADRGAYLNMFSGHG-SGLTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      .|++||++++.....+..+. ..+.+++|+|  +++++++++.|+.|++||+++++.+..+..               |.
T Consensus       164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---------------~~  228 (814)
T 3mkq_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------------HM  228 (814)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC---------------CS
T ss_pred             eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC---------------CC
Confidence            99999999888777776655 8899999999  999999999999999999999998888876               88


Q ss_pred             cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCe-EEEEeCCCcEEEEEccccccee
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRES-LVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~-l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      ..+.+++|+|+++++++++.||.+              ..|...+.+++|+|++.. +++++.|+.+.+|++.......
T Consensus       229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (814)
T 3mkq_A          229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTL  307 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCcee
Confidence            999999999999999999999987              445679999999999874 3555568889999987655443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.2e-24  Score=165.02  Aligned_cols=190  Identities=13%  Similarity=0.077  Sum_probs=156.0

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDST   63 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~   63 (216)
                      +++++++..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++....+..+....                .++.
T Consensus        19 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~   97 (391)
T 1l0q_A           19 VTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASST   97 (391)
T ss_dssp             TTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCE
Confidence            35678888888775 58999999999876 677799999999999999888877554211                5699


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      |++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||+.+++....+..                ...+
T Consensus        98 v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------------~~~~  160 (391)
T 1l0q_A           98 LSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV----------------GRSP  160 (391)
T ss_dssp             EEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------CSSE
T ss_pred             EEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec----------------CCCc
Confidence            999999999988887754 568999999999977 6888899999999999988777763                3567


Q ss_pred             EEEEeCCCCcEE-EEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEe---CCCcEEEEEcccccceeec
Q 043942          143 TCLSWPGTSKYL-VTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVS---VDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       143 ~~~~~~~~~~~l-~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~---~d~~v~vw~~~~~~~~~~~  205 (216)
                      ..++|+|+++++ ++++.++.+             ..+...+.+++|+|++++|++++   .++.|++||+.+++....+
T Consensus       161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~  240 (391)
T 1l0q_A          161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence            899999999887 566778877             34556789999999999998887   6899999999988766555


Q ss_pred             CCc
Q 043942          206 PSY  208 (216)
Q Consensus       206 ~~~  208 (216)
                      +.+
T Consensus       241 ~~~  243 (391)
T 1l0q_A          241 PVG  243 (391)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.1e-26  Score=178.15  Aligned_cols=176  Identities=13%  Similarity=0.093  Sum_probs=147.3

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc---eEEEEeCCCC---------------------------------
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN---LQCTVEGPRG---------------------------------   57 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~---------------------------------   57 (216)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+..+..+..                                 
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999976666 47899999999988   5555542211                                 


Q ss_pred             ---------------------cc-----------------cCcEEEEEECC--Ccceeeeee--ccCCCeeEEEEcCCCc
Q 043942           58 ---------------------GI-----------------EDSTVWMWNAD--RGAYLNMFS--GHGSGLTCGDFTTDGK   95 (216)
Q Consensus        58 ---------------------~~-----------------~~~~v~i~d~~--~~~~~~~~~--~~~~~v~~~~~~~~~~   95 (216)
                                           .+                 .|+.|++||+.  ++..+..+.  .|...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                                 12                 78999999999  888887776  5678899999999999


Q ss_pred             EEEEecCCCeEEEEeCCCCceeE----EeecccccccccceEEEeeeecCeEEEEeCCC---CcEEEEecccCeE-----
Q 043942           96 TICTGSDNATLSIWNPKGGENFH----AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT---SKYLVTGCVDGKV-----  163 (216)
Q Consensus        96 ~l~t~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~i-----  163 (216)
                      +|++++.|+.+++|++.+++...    .+..               |...|.+++|+|+   +++|++++.|+.+     
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~---------------h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~  227 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILG---------------HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY  227 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEE---------------CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeec---------------ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence            99999999999999998776543    3333               8889999999999   9999999999988     


Q ss_pred             ----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          164 ----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       164 ----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                                .+|...|.+++|+ ++++|++++.|+.|++||+.+++....++
T Consensus       228 ~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          228 PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence                      3688999999999 99999999999999999999988665543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=5.2e-26  Score=170.93  Aligned_cols=182  Identities=10%  Similarity=0.036  Sum_probs=144.2

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCC-------------cccCcEEEEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRG-------------GIEDSTVWMW   67 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~-------------~~~~~~v~i~   67 (216)
                      ++++++..+. |...|.+++++++.  ++.+. |+.|++||+.++ +.+..+..+..             +..++.|++|
T Consensus        89 ~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iw  164 (355)
T 3vu4_A           89 VKKQDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHIT  164 (355)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEE
T ss_pred             CCCcEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEE
Confidence            5677888886 66799999999864  44443 789999999987 44333221000             1278999999


Q ss_pred             ECCCcc---------------e-eeeeeccCCCeeEEEEcCCCcEEEEecCCCe-EEEEeCCCCceeEEeeccccccccc
Q 043942           68 NADRGA---------------Y-LNMFSGHGSGLTCGDFTTDGKTICTGSDNAT-LSIWNPKGGENFHAIRRSSLEFSLN  130 (216)
Q Consensus        68 d~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~  130 (216)
                      |++++.               + +..+.+|.+.|++++|+|++++|++|+.|++ |++||+++++.+..+....      
T Consensus       165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~------  238 (355)
T 3vu4_A          165 KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL------  238 (355)
T ss_dssp             ECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT------
T ss_pred             ECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC------
Confidence            999765               2 6788999999999999999999999999998 9999999999888876210      


Q ss_pred             ceEEEeeeecCeEEEEeCCCCcEEEEecccCeEE------e-----e--------------------------eCCEEEE
Q 043942          131 YWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVD------G-----H--------------------------IDAIQSL  173 (216)
Q Consensus       131 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~------~-----~--------------------------~~~i~~~  173 (216)
                             |...|.+++|+|++++|++++.|+.+.      .     +                          ..+...+
T Consensus       239 -------h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (355)
T 3vu4_A          239 -------DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI  311 (355)
T ss_dssp             -------CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred             -------CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence                   778999999999999999999999880      0     0                          0112668


Q ss_pred             EEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          174 SVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       174 ~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +|++++++|++++.||.+++|++...+
T Consensus       312 a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          312 AWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            999999999999999999999988754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.2e-25  Score=168.07  Aligned_cols=183  Identities=9%  Similarity=0.032  Sum_probs=139.6

Q ss_pred             CCceeEEee-ccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-cc----------------cCc
Q 043942            3 QGDWASEIL-GHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-GI----------------EDS   62 (216)
Q Consensus         3 ~g~~~~~~~-~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~----------------~~~   62 (216)
                      +++.++.+. +|.++|.+++|+|  ++++|++++.|+.|++||+++++.......+.. .+                .|+
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg  192 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG  192 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence            455455554 6778999999999  999999999999999999999988766543322 12                899


Q ss_pred             EEEEEECCCccee-eeeec-cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           63 TVWMWNADRGAYL-NMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        63 ~v~i~d~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      .|++||+++++.+ ..+.. |.+.|++++|+|++.+|++++. +.|++||+++++....+.....            +..
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~------------~~~  259 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTI------------PEF  259 (343)
T ss_dssp             CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC---------------
T ss_pred             EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeeccccc------------ccc
Confidence            9999999999887 77887 9999999999999999999994 5999999998876544332000            112


Q ss_pred             Ce--EEEEeCCCCcEEEEecc-cCeEEe----------eeCCEEEEEEec---CCCeEEEEeCCCcEEEEEccc
Q 043942          141 GV--TCLSWPGTSKYLVTGCV-DGKVDG----------HIDAIQSLSVSA---IRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       141 ~v--~~~~~~~~~~~l~~~~~-~~~i~~----------~~~~i~~~~~~~---~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      .+  .+++|+|+++++++++. ++.+.-          ...++..++|+|   +.+.+++++.|+.++++-...
T Consensus       260 ~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          260 KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             --CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            22  57999999999999887 777711          113456788988   888999999999999886443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=4.2e-24  Score=162.09  Aligned_cols=188  Identities=15%  Similarity=0.108  Sum_probs=152.2

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV   64 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v   64 (216)
                      ++++++..+..|. .+.+++|+|++++|+ +++.++.|++||+.+++....+..+....                .++.|
T Consensus        62 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v  140 (391)
T 1l0q_A           62 ATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV  140 (391)
T ss_dssp             TTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence            5678888887665 899999999999775 55567999999999998887776543321                68999


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      ++||+++++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++....+.                +...+.
T Consensus       141 ~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----------------~~~~~~  203 (391)
T 1l0q_A          141 SVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----------------VEAAPS  203 (391)
T ss_dssp             EEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------------CSSEEE
T ss_pred             EEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----------------cCCCcc
Confidence            99999999988888765 457999999999887 677889999999999988777665                456788


Q ss_pred             EEEeCCCCcEEEEec---ccCeE-------------EeeeCCEEEEEEecCCCeE-EEEeCCCcEEEEEcccccceeecC
Q 043942          144 CLSWPGTSKYLVTGC---VDGKV-------------DGHIDAIQSLSVSAIRESL-VSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~---~~~~i-------------~~~~~~i~~~~~~~~~~~l-~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                      +++|+|+++++++++   .++.+             ......+.+++|+|++++| ++++.|+.|++||+.+++....++
T Consensus       204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence            999999999998887   46666             2223467899999999987 577889999999999887665544


Q ss_pred             C
Q 043942          207 S  207 (216)
Q Consensus       207 ~  207 (216)
                      .
T Consensus       284 ~  284 (391)
T 1l0q_A          284 V  284 (391)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.2e-25  Score=172.95  Aligned_cols=182  Identities=18%  Similarity=0.226  Sum_probs=145.7

Q ss_pred             cccceEEEE--EccCCCEEEEEcCCCcEEEEECCCCceEEEEeC--CCCcc----------------cCcEEEEEECCCc
Q 043942           13 HKDSFSSLA--FSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGGI----------------EDSTVWMWNADRG   72 (216)
Q Consensus        13 h~~~v~~~~--~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~~----------------~~~~v~i~d~~~~   72 (216)
                      +...+.++.  +++++++|++++.|+.|++||+.+++.+..+..  |...+                .|+.|++||++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence            345566666  557899999999999999999999999999887  45444                8999999999999


Q ss_pred             ceeeeee-ccCCCeeEEEEc----CCCcEEEEecCCCeEEEEeCCCCceeEEeecccc-----cccccce----EEEe--
Q 043942           73 AYLNMFS-GHGSGLTCGDFT----TDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL-----EFSLNYW----MICT--  136 (216)
Q Consensus        73 ~~~~~~~-~~~~~v~~~~~~----~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~-----~~~~~~~----~~~~--  136 (216)
                      +++..+. .|...|.+++|+    |++.++++++.|+.|++||+++++.+..+.....     .+.+...    ....  
T Consensus       247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  326 (437)
T 3gre_A          247 VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI  326 (437)
T ss_dssp             EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred             cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence            9988876 688899999665    4678999999999999999999998888774321     1111100    0011  


Q ss_pred             eeecCeEEEEeCCCCcEEEEecccCeE--------------Ee-------------------------------------
Q 043942          137 SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DG-------------------------------------  165 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~-------------------------------------  165 (216)
                      .|...|.+++|+ ++++|++++.|+.+              .+                                     
T Consensus       327 ~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (437)
T 3gre_A          327 RSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLY  405 (437)
T ss_dssp             CSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC------------
T ss_pred             ccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccc
Confidence            267789999999 78999999999988              11                                     


Q ss_pred             eeCCEEEEEEecC--CCeEEEEeCCCcEEEEE
Q 043942          166 HIDAIQSLSVSAI--RESLVSVSVDGTARVFE  195 (216)
Q Consensus       166 ~~~~i~~~~~~~~--~~~l~s~~~d~~v~vw~  195 (216)
                      |...|.+++|+++  +.+|++++.||.|++|+
T Consensus       406 h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          406 HHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            8899999999998  78999999999999995

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.5e-26  Score=175.97  Aligned_cols=162  Identities=13%  Similarity=0.115  Sum_probs=134.2

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc-----c----------------cCcEEEEEECC
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG-----I----------------EDSTVWMWNAD   70 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-----~----------------~~~~v~i~d~~   70 (216)
                      .|...|.+++|||+|++||+++.||.|++||...  .+..+. +...     +                .||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            5688999999999999999999999999999543  444444 3321     1                89999999999


Q ss_pred             Ccc-------eeeee----eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee---EEee-cccccccccceEEE
Q 043942           71 RGA-------YLNMF----SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF---HAIR-RSSLEFSLNYWMIC  135 (216)
Q Consensus        71 ~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~---~~~~-~~~~~~~~~~~~~~  135 (216)
                      ++.       .+.++    .+|...|.+++|+|+|  +++++.|+.+++||+.++...   ..+. .             
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~-------------  224 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA-------------  224 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC-------------
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc-------------
Confidence            875       25665    5677899999999999  888889999999999877732   3442 3             


Q ss_pred             eeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEE--ecCCCeEEEEeCCCcEEEEEcc
Q 043942          136 TSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSV--SAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       136 ~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~--~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                        |...|.+++|+  ++.+++++ ++.+              .+|...|..++|  +|++..|+++++||+ ++|...
T Consensus       225 --h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          225 --SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             --CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             --ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence              77899999999  68888887 5777              378899999999  999999999999999 999975

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=3.1e-24  Score=164.85  Aligned_cols=188  Identities=12%  Similarity=0.019  Sum_probs=155.3

Q ss_pred             CCCceeE-----EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------
Q 043942            2 NQGDWAS-----EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------   59 (216)
Q Consensus         2 ~~g~~~~-----~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------   59 (216)
                      ++++.+.     .+.+|...|.+++|+|+++++++++.|+.|++||+.+++....+..+...+                 
T Consensus       152 ~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  231 (433)
T 3bws_A          152 NSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW  231 (433)
T ss_dssp             TTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET
T ss_pred             CCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec
Confidence            3556665     445788899999999999999999999999999999998888887655433                 


Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec--------CCCeEEEEeCCCCceeEEeecccccccccc
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS--------DNATLSIWNPKGGENFHAIRRSSLEFSLNY  131 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~--------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  131 (216)
                      .++.|++||+++++.+..+..+ ..+.+++|+|+++.+++++        .|+.|++||+++++....+.          
T Consensus       232 ~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----------  300 (433)
T 3bws_A          232 ISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----------  300 (433)
T ss_dssp             TTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----------
T ss_pred             CCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----------
Confidence            5899999999999888877754 5599999999999999887        58899999999888776654          


Q ss_pred             eEEEeeeecCeEEEEeCCCCcEE-EEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeC----------
Q 043942          132 WMICTSLYDGVTCLSWPGTSKYL-VTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSV----------  187 (216)
Q Consensus       132 ~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~----------  187 (216)
                            +...+.+++|+|+++.+ ++++.++.+             ..+...+.+++|+|+++++++++.          
T Consensus       301 ------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  374 (433)
T 3bws_A          301 ------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYL  374 (433)
T ss_dssp             ------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTT
T ss_pred             ------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccc
Confidence                  56688999999999755 566788877             345678999999999998888776          


Q ss_pred             -----CCcEEEEEcccccceeecC
Q 043942          188 -----DGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       188 -----d~~v~vw~~~~~~~~~~~~  206 (216)
                           ||.|++||+.+++....++
T Consensus       375 ~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          375 KKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             SCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             cccccceEEEEEECCCCcEEEEec
Confidence                 5799999998877665543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1e-26  Score=180.44  Aligned_cols=170  Identities=11%  Similarity=0.074  Sum_probs=131.4

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------cCcEEEEEECCCcceeeeee-ccCCC
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------EDSTVWMWNADRGAYLNMFS-GHGSG   84 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------~~~~v~i~d~~~~~~~~~~~-~~~~~   84 (216)
                      .-...|.+++|+|||+++||++.|++|+  |...++.+   .+|...+      .+|.+..|++.+++....+. .|...
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~   87 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCY   87 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCC
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCc
Confidence            4557899999999999999999999999  75555433   5555554      56677777777655433333 46788


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-  163 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-  163 (216)
                      |.+++|+|+|..||+++.||.|++||...  .+..+.. ....          ....+.+++|+|+|++|++|+.||.+ 
T Consensus        88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~-~~~~----------~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDS-KGNL----------SSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCC-SSCS----------TTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccC-CCcc----------ccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            99999999999999999999999999543  3333321 0000          12359999999999999999999988 


Q ss_pred             ------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          164 ------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       164 ------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                                              .+|..+|.+++|+|+|  +++++.|++|++|++...+.
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence                                    1123589999999999  88888999999999988763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.4e-26  Score=190.83  Aligned_cols=182  Identities=8%  Similarity=0.064  Sum_probs=131.9

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTC   87 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~   87 (216)
                      ..+.+|...+.+++|+|++++|++|+.|++|++||+.++....          ...+. .++.  +.  .-.+|...|.+
T Consensus       429 ~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~----------~~~~~-~~l~--~~--~~~~h~~~V~s  493 (902)
T 2oaj_A          429 YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD----------NASFE-VNLS--RT--LNKAKELAVDK  493 (902)
T ss_dssp             CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT----------TBCEE-EEHH--HH--TTCSSSCCEEE
T ss_pred             CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC----------CceEE-eech--hh--cCCCCCCceeE
Confidence            3577888888899999999999999999999999987663200          00000 0000  00  01278899999


Q ss_pred             EEEcCCCcEEEEecCCCeEEEEeCCCCceeEE----------eeccc--c------------------cccccceEEEee
Q 043942           88 GDFTTDGKTICTGSDNATLSIWNPKGGENFHA----------IRRSS--L------------------EFSLNYWMICTS  137 (216)
Q Consensus        88 ~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~----------~~~~~--~------------------~~~~~~~~~~~~  137 (216)
                      ++|+|++++||+|+.|++|++||+.+++....          +....  .                  ...........+
T Consensus       494 vafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~  573 (902)
T 2oaj_A          494 ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA  573 (902)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC
T ss_pred             EEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc
Confidence            99999999999999999999999987642110          00000  0                  000011233445


Q ss_pred             eecCeEEEEeCCCCcEEEEecccCeE-------------------E-eeeCCEEEEEEe-----cCC---CeEEEEeCCC
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDGKV-------------------D-GHIDAIQSLSVS-----AIR---ESLVSVSVDG  189 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~~i-------------------~-~~~~~i~~~~~~-----~~~---~~l~s~~~d~  189 (216)
                      |...|++++|+|+| +|++|+.|+.+                   . +|...|++++|+     |||   ++|++++.|+
T Consensus       574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~  652 (902)
T 2oaj_A          574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG  652 (902)
T ss_dssp             CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred             CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence            89999999999999 99999999987                   1 577789999999     885   8999999999


Q ss_pred             cEEEEEc---ccccceeec
Q 043942          190 TARVFEI---AEFRRATKA  205 (216)
Q Consensus       190 ~v~vw~~---~~~~~~~~~  205 (216)
                      +|++||+   .+++....+
T Consensus       653 tv~~wd~~p~~~g~~~~~~  671 (902)
T 2oaj_A          653 EVITYKILPASGGKFDVQL  671 (902)
T ss_dssp             EEEEEEEEECGGGCEEEEE
T ss_pred             cEEEEEEecCCCCcEEEEe
Confidence            9999999   666654443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.93  E-value=2.8e-24  Score=162.84  Aligned_cols=151  Identities=21%  Similarity=0.345  Sum_probs=127.7

Q ss_pred             CCCceeEEe-----eccccceEEEEEcc-CCCEEEEEcCCCcEEEEECC-CCceEEEEeCCCCcc---------------
Q 043942            2 NQGDWASEI-----LGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTS-SRNLQCTVEGPRGGI---------------   59 (216)
Q Consensus         2 ~~g~~~~~~-----~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~~---------------   59 (216)
                      ++++.+..+     .+|...|.+++|++ ++++|++|+.|+.|++||++ ..+.+..+.+|...+               
T Consensus       188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~  267 (380)
T 3iz6_a          188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG  267 (380)
T ss_dssp             TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE
T ss_pred             CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE
Confidence            456666666     67999999999987 88999999999999999998 457777887777655               


Q ss_pred             -cCcEEEEEECCCcceeeeeeccC-------CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccc
Q 043942           60 -EDSTVWMWNADRGAYLNMFSGHG-------SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNY  131 (216)
Q Consensus        60 -~~~~v~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  131 (216)
                       .|++|++||++++..+..+..+.       ..|++++|+|+++++++|+.|+.|++||+.+++....+....       
T Consensus       268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-------  340 (380)
T 3iz6_a          268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ-------  340 (380)
T ss_dssp             CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSC-------
T ss_pred             cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEeccc-------
Confidence             89999999999998887776543       248999999999999999999999999999888777663210       


Q ss_pred             eEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942          132 WMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                          .+|...|.+++|+|++++|++|+.|+.+
T Consensus       341 ----~~h~~~v~~l~~s~dg~~l~sgs~D~~i  368 (380)
T 3iz6_a          341 ----NSHEGRISCLGLSSDGSALCTGSWDKNL  368 (380)
T ss_dssp             ----SSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred             ----CCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence                1288999999999999999999999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.93  E-value=8.4e-23  Score=150.53  Aligned_cols=193  Identities=12%  Similarity=0.166  Sum_probs=134.4

Q ss_pred             eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--CCcc----------------cCcEEEEEECCCcceeeee
Q 043942           17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--RGGI----------------EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~~----------------~~~~v~i~d~~~~~~~~~~   78 (216)
                      .++|+||+++ +||+|. |++|++||+.+++.+..+..+  ...+                .|++|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5789999875 777665 999999999999988887643  3323                8999999999999999999


Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccc-----cccc-----------------------
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSL-----EFSL-----------------------  129 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~-----~~~~-----------------------  129 (216)
                      .+|...+.++.+  ++..+++++.++.+++|+...... +..+.....     ....                       
T Consensus       106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            999988877665  467999999999999999887643 333333000     0000                       


Q ss_pred             ---cceEEEeeeecCeEEEEeCCCCcEE---EEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEe--CC
Q 043942          130 ---NYWMICTSLYDGVTCLSWPGTSKYL---VTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVS--VD  188 (216)
Q Consensus       130 ---~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~--~d  188 (216)
                         ........+...|..+.++|++..+   ++++.++.+             ..+...+..+.|+|++..+++++  .|
T Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d  263 (318)
T 4ggc_A          184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ  263 (318)
T ss_dssp             TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred             ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCC
Confidence               0001111133345555555543321   233344443             45566788999999998887654  78


Q ss_pred             CcEEEEEcccccceeecCCcceeEE
Q 043942          189 GTARVFEIAEFRRATKAPSYSFKLF  213 (216)
Q Consensus       189 ~~v~vw~~~~~~~~~~~~~~~~~~~  213 (216)
                      +.|++||+.+++++..+..|...+.
T Consensus       264 ~~i~iwd~~~~~~~~~l~gH~~~V~  288 (318)
T 4ggc_A          264 NQLVIWKYPTMAKVAELKGHTSRVL  288 (318)
T ss_dssp             CCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEE
Confidence            9999999999998888887765554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=4.6e-25  Score=167.89  Aligned_cols=152  Identities=14%  Similarity=0.117  Sum_probs=115.4

Q ss_pred             EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC------
Q 043942           19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT------   92 (216)
Q Consensus        19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~------   92 (216)
                      ...+++++.+|++++.|++|++||..+++....                     ..+..+.+|.+.|++++|+|      
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~---------------------~~~~~~~gH~~~v~~v~~~p~~~~~~  152 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQ---------------------HVLGGKSGHHNFVNDIDIADVYSADN  152 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEE---------------------EEECTTTSCSSCEEEEEEEEEECTTC
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCcccee---------------------eeecccCCCCCceEEEEEcccccccc
Confidence            334445666899999888888888766543221                     22345778999999999998      


Q ss_pred             --CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE------
Q 043942           93 --DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV------  163 (216)
Q Consensus        93 --~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i------  163 (216)
                        ++++|++|+.|++|++||++++.....+..               |...+.+++|+|++. +|++++.|+.+      
T Consensus       153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~---------------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~  217 (393)
T 4gq1_A          153 RLAEQVIASVGDDCTLIIWRLTDEGPILAGYP---------------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWT  217 (393)
T ss_dssp             SEEEEEEEEEETTSEEEEEEEETTEEEEEEEE---------------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEECCCeEEEEECCCCceeeeecC---------------CCCCcEEEEECCCCCceEEecCCCCEEEEEECC
Confidence              789999999999999999998877766655               889999999999875 79999999988      


Q ss_pred             ---------------------------------EeeeCCEEEEEEe-cCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          164 ---------------------------------DGHIDAIQSLSVS-AIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       164 ---------------------------------~~~~~~i~~~~~~-~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                                                       .+|...+.++.|+ |+++.|++++.|+.+++||+..++....+.
T Consensus       218 t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~  294 (393)
T 4gq1_A          218 LNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS  294 (393)
T ss_dssp             CCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------
T ss_pred             CCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe
Confidence                                             3466778889987 799999999999999999998766554443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=7.2e-23  Score=157.23  Aligned_cols=180  Identities=13%  Similarity=0.087  Sum_probs=146.0

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCCCCcc---------------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------------   59 (216)
                      ++++.+.++..|...+.+++|+|++++++ +++.|+.|++||+.+++....+..+....                     
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  278 (433)
T 3bws_A          199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ  278 (433)
T ss_dssp             TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred             CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence            56778888889999999999999998875 55589999999999988776655432211                     


Q ss_pred             --cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942           60 --EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT  136 (216)
Q Consensus        60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (216)
                        .++.|++||+++++.+..+. |...+.+++|+|+++.+ ++++.|+.|++||+.+++....+.               
T Consensus       279 ~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---------------  342 (433)
T 3bws_A          279 ESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---------------  342 (433)
T ss_dssp             CSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------------
T ss_pred             ccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---------------
Confidence              16799999999988776653 66688999999999754 667899999999999888777665               


Q ss_pred             eeecCeEEEEeCCCCcEEEEecc---------------cCeE-------------EeeeCCEEEEEEecCCCeEEEEeC-
Q 043942          137 SLYDGVTCLSWPGTSKYLVTGCV---------------DGKV-------------DGHIDAIQSLSVSAIRESLVSVSV-  187 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~~~---------------~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~-  187 (216)
                       +...+.+++|+|+++++++++.               ||.+             ..+...+.+++|+|+|++|++++. 
T Consensus       343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  421 (433)
T 3bws_A          343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL  421 (433)
T ss_dssp             -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETT
T ss_pred             -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECC
Confidence             5677899999999998888776               3566             233567899999999999988775 


Q ss_pred             CCcEEEEEccc
Q 043942          188 DGTARVFEIAE  198 (216)
Q Consensus       188 d~~v~vw~~~~  198 (216)
                      |+.|++|++..
T Consensus       422 d~~i~v~~~~~  432 (433)
T 3bws_A          422 DHQIRVYRRDG  432 (433)
T ss_dssp             TTEEEEEEETT
T ss_pred             CCeEEEEEecC
Confidence            99999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=9.2e-24  Score=154.87  Aligned_cols=145  Identities=14%  Similarity=0.170  Sum_probs=117.9

Q ss_pred             CCCceeEEeeccccceEEEEEcc---CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC---------------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFST---DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG---------------------   57 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---------------------   57 (216)
                      ++|+.+..+.+|...+..++|+|   ++++|++++.|++|++||+.+++.++++..+..                     
T Consensus       166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s  245 (356)
T 2w18_A          166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLS  245 (356)
T ss_dssp             TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC
T ss_pred             CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEec
Confidence            35777777888888888888888   668999999999999999999999999875432                     


Q ss_pred             ----------cccCcEEEEEECCCcceeeee-----eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           58 ----------GIEDSTVWMWNADRGAYLNMF-----SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        58 ----------~~~~~~v~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                                +..|+++++||..+++.+..+     .+|...+.+.+++  +.++++++.|++|++||+.+++.+.++..
T Consensus       246 ~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~g  323 (356)
T 2w18_A          246 HPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPP  323 (356)
T ss_dssp             ------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             cCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence                      116789999999999887655     3666555444444  78999999999999999999999999876


Q ss_pred             ccccccccceEEEeeeecCeE-EEEeCCCCcEEEEecccCeE
Q 043942          123 SSLEFSLNYWMICTSLYDGVT-CLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~i  163 (216)
                                     |...+. .++|+|+|++|++|+.|+.|
T Consensus       324 ---------------H~~~vvs~vafSPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          324 ---------------VSDQHWSFVKWSGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             ---------------C--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred             ---------------CCCCeEEEEEECCCCCEEEEEECCCcE
Confidence                           666554 68999999999999999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.92  E-value=1.1e-22  Score=156.01  Aligned_cols=194  Identities=13%  Similarity=0.178  Sum_probs=140.5

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--CCcc----------------cCcEEEEEECCCcceeee
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--RGGI----------------EDSTVWMWNADRGAYLNM   77 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~~----------------~~~~v~i~d~~~~~~~~~   77 (216)
                      .++.|+||++ ++||+|. |++|++||..+++....+..+  ...+                .|++|++||+++++.+..
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            3567999975 5777765 999999999999988877643  3333                899999999999999999


Q ss_pred             eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccc-----ccc-----------------------
Q 043942           78 FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSL-----EFS-----------------------  128 (216)
Q Consensus        78 ~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~-----~~~-----------------------  128 (216)
                      +.+|...+.+++++  +..+++|+.|+.+++||...... +..+.....     ...                       
T Consensus       185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            99999999998875  67999999999999999886543 333332000     000                       


Q ss_pred             ---ccceEEEeeeecCeEEEEeCCCCc-EEEE--ecccCeE-------------EeeeCCEEEEEEecCCCeEEEEe--C
Q 043942          129 ---LNYWMICTSLYDGVTCLSWPGTSK-YLVT--GCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVS--V  187 (216)
Q Consensus       129 ---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~--~  187 (216)
                         .........+...|.+++|+|.+. .+++  |+.|+.|             ..+...+.++.|+|+++.+++++  .
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~  342 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA  342 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTT
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecC
Confidence               001112233666788888888554 4443  3467766             34456788888888888877654  6


Q ss_pred             CCcEEEEEcccccceeecCCcceeEE
Q 043942          188 DGTARVFEIAEFRRATKAPSYSFKLF  213 (216)
Q Consensus       188 d~~v~vw~~~~~~~~~~~~~~~~~~~  213 (216)
                      |+.|+|||+.+++++..+..|...+.
T Consensus       343 d~~I~iwd~~~~~~v~~l~gH~~~V~  368 (420)
T 4gga_A          343 QNQLVIWKYPTMAKVAELKGHTSRVL  368 (420)
T ss_dssp             TCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEE
Confidence            88899999888888887777765554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=3.3e-22  Score=153.21  Aligned_cols=186  Identities=15%  Similarity=0.098  Sum_probs=142.4

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCC---cEEEEECCCCceEEEEeCCCCcc-------------------cC
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHG---LVQNRDTSSRNLQCTVEGPRGGI-------------------ED   61 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~~-------------------~~   61 (216)
                      +...+.+.+|...|.+++|+|+|++|++++.++   .|++||+.+++... +..+...+                   .+
T Consensus       168 g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g~  246 (415)
T 2hqs_A          168 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGS  246 (415)
T ss_dssp             SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEEEEEEecCCC
Confidence            445677888999999999999999999999875   99999999887653 33333221                   24


Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-CC--eEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      ..|++||+++++. ..+..|...+.+++|+|+|+.|++++. ++  .|++||+.+++.. .+..               +
T Consensus       247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~---------------~  309 (415)
T 2hqs_A          247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW---------------E  309 (415)
T ss_dssp             CEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC---------------S
T ss_pred             ceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec---------------C
Confidence            5699999998776 566778889999999999999988775 44  6888899877643 3332               5


Q ss_pred             ecCeEEEEeCCCCcEEEEeccc---CeE-------------EeeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEcccc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVD---GKV-------------DGHIDAIQSLSVSAIRESLVSVSVDG---TARVFEIAEF  199 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~---~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~~~~  199 (216)
                      ...+..++|+|+|++|++++.+   ..+             ..+ ..+.+++|+|+|++|++++.++   .|++||+. +
T Consensus       310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g  387 (415)
T 2hqs_A          310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-G  387 (415)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-S
T ss_pred             CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-C
Confidence            5678899999999999887764   234             222 3789999999999999888776   79999986 4


Q ss_pred             cceeecCCcc
Q 043942          200 RRATKAPSYS  209 (216)
Q Consensus       200 ~~~~~~~~~~  209 (216)
                      +....++.+.
T Consensus       388 ~~~~~l~~~~  397 (415)
T 2hqs_A          388 RFKARLPATD  397 (415)
T ss_dssp             CCEEECCCSS
T ss_pred             CcEEEeeCCC
Confidence            4445555544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=5.7e-23  Score=152.68  Aligned_cols=159  Identities=19%  Similarity=0.286  Sum_probs=119.2

Q ss_pred             ceeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCC---------ceEEEEeCCCCcc--------------
Q 043942            5 DWASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSR---------NLQCTVEGPRGGI--------------   59 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~---------~~~~~~~~~~~~~--------------   59 (216)
                      ++...+.+|...|.+++|+|  ++++|++++.|+.|++||+.++         +....+..+...+              
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            46677889999999999999  6999999999999999999886         4455665554433              


Q ss_pred             ----cCcEEEEEECCCcce------------------------------------------------------------e
Q 043942           60 ----EDSTVWMWNADRGAY------------------------------------------------------------L   75 (216)
Q Consensus        60 ----~~~~v~i~d~~~~~~------------------------------------------------------------~   75 (216)
                          .|+.|++||+++++.                                                            +
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence                789999999875431                                                            3


Q ss_pred             eeeeccCCCeeEEEEcCCC----cEEEEecCCCeEEEEeCCCCceeEEeecccc--------------------------
Q 043942           76 NMFSGHGSGLTCGDFTTDG----KTICTGSDNATLSIWNPKGGENFHAIRRSSL--------------------------  125 (216)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~----~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~--------------------------  125 (216)
                      ..+.+|...|++++|+|++    ++|++++.|+.|++||++++...........                          
T Consensus       208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence            4456788999999999998    8999999999999999987532211110000                          


Q ss_pred             -----cccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942          126 -----EFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       126 -----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                           ...........+|...|++++|+|++++|++++.||.+
T Consensus       288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v  330 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKV  330 (351)
T ss_dssp             ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCE
T ss_pred             eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcE
Confidence                 00001122233478899999999999999999999987

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=3.1e-22  Score=148.83  Aligned_cols=148  Identities=23%  Similarity=0.314  Sum_probs=115.0

Q ss_pred             cCcEEEEEECCCc-----ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc-----ccc
Q 043942           60 EDSTVWMWNADRG-----AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE-----FSL  129 (216)
Q Consensus        60 ~~~~v~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~-----~~~  129 (216)
                      .|++|++||+.+.     .+...+.+|...|.+++|+|++++|++++.|+.|++|+................     ...
T Consensus        59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (340)
T 4aow_A           59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS  138 (340)
T ss_dssp             TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred             CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee
Confidence            7999999998754     356678899999999999999999999999999999999987665544431100     000


Q ss_pred             --c---------------------ceEEEeeeecCeEEEEeCCCC--cEEEEecccCeE--------------EeeeCCE
Q 043942          130 --N---------------------YWMICTSLYDGVTCLSWPGTS--KYLVTGCVDGKV--------------DGHIDAI  170 (216)
Q Consensus       130 --~---------------------~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~i--------------~~~~~~i  170 (216)
                        .                     ......+|...+..++|++++  .++++++.|+.+              .+|..+|
T Consensus       139 ~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v  218 (340)
T 4aow_A          139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL  218 (340)
T ss_dssp             TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcE
Confidence              0                     001112366778899998764  567888888877              5688899


Q ss_pred             EEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          171 QSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       171 ~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      .+++|+|++++|++++.|+.|++||+.+.+....+..
T Consensus       219 ~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  255 (340)
T 4aow_A          219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG  255 (340)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC
Confidence            9999999999999999999999999998877655443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.90  E-value=8e-22  Score=149.84  Aligned_cols=197  Identities=21%  Similarity=0.274  Sum_probs=125.1

Q ss_pred             CCCceeEEeeccccceEEEEEccC---CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cC
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTD---GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------ED   61 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~   61 (216)
                      .+++.+..+. +...+.++.++|.   +.++++++.|+.|++||+.+++....+..|...+                 .+
T Consensus       130 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~d  208 (408)
T 4a11_B          130 NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASAD  208 (408)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCC
Confidence            4566666665 7788999999984   4599999999999999999998888887766544                 78


Q ss_pred             cEEEEEECCCcc-eeeee---------------eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccc
Q 043942           62 STVWMWNADRGA-YLNMF---------------SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL  125 (216)
Q Consensus        62 ~~v~i~d~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~  125 (216)
                      +.|++||++++. .+..+               ..|...|.+++|+|++++|++++.|+.|++||+++++..........
T Consensus       209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  288 (408)
T 4a11_B          209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC  288 (408)
T ss_dssp             SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC
T ss_pred             CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc
Confidence            999999998764 33333               56888999999999999999999999999999998765432221000


Q ss_pred             c--------------------------------ccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------
Q 043942          126 E--------------------------------FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------  163 (216)
Q Consensus       126 ~--------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------  163 (216)
                      .                                ..........+|...|.+++|+|++++|++++.||.+          
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence            0                                0111223334588899999999999999999999998          


Q ss_pred             -EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcccc
Q 043942          164 -DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       164 -~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                       ......-....+.+ ....+.+++.|+.+++|+....
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  406 (408)
T 4a11_B          369 VPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHPQF  406 (408)
T ss_dssp             --------------------------------------
T ss_pred             cCCCCceEeccccccccceeecccCccCceeecCCccc
Confidence             11111112223333 2334556778999999987644

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=5.4e-22  Score=152.73  Aligned_cols=157  Identities=15%  Similarity=0.143  Sum_probs=118.5

Q ss_pred             cccceEEEEEccCCCEEE----EEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEE
Q 043942           13 HKDSFSSLAFSTDGQLLA----SGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCG   88 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~----s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~   88 (216)
                      |...|.+++|+|+|++|+    +++.|+.|++||+.++...     .    . ..     .+.-..+..+.+|...|.++
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~-----~----~-~~-----~~~~~~~~~~~~h~~~V~~v  155 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE-----A----K-QQ-----KRPFAYHKLLKDAGGMVIDM  155 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCT-----T----C-SS-----CCCSEEEECCCSGGGSEEEE
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccC-----C----c-CC-----cceeeeeeccCCCCCceEEE
Confidence            566799999999999999    7888888888886543100     0    0 00     00001234566799999999


Q ss_pred             EEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----
Q 043942           89 DFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----  163 (216)
Q Consensus        89 ~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----  163 (216)
                      +|+|+ +.+|++++.|++|++||++++........               |...+.+++|+|+|++|++++.||.+    
T Consensus       156 ~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~---------------~~~~v~~v~wspdg~~lasgs~dg~v~iwd  220 (434)
T 2oit_A          156 KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP---------------STVAVTSVCWSPKGKQLAVGKQNGTVVQYL  220 (434)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC---------------GGGCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC---------------CCCceeEEEEcCCCCEEEEEcCCCcEEEEc
Confidence            99997 78999999999999999998865544443               77899999999999999999999988    


Q ss_pred             ---------Ee-------eeCCEEEEEEecCCCeEEEEe-CCC------cEEEEEcccc
Q 043942          164 ---------DG-------HIDAIQSLSVSAIRESLVSVS-VDG------TARVFEIAEF  199 (216)
Q Consensus       164 ---------~~-------~~~~i~~~~~~~~~~~l~s~~-~d~------~v~vw~~~~~  199 (216)
                               ..       |...|.+++|++++.++++.+ .||      .+++|++...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          221 PTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                     01       123799999999998886533 343      3899999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.86  E-value=2.5e-20  Score=142.76  Aligned_cols=182  Identities=16%  Similarity=0.064  Sum_probs=135.9

Q ss_pred             CCCcee--EEeeccccceEEEEEcc--------------CCCEEEEEcCC------CcEEEEECCCCceEEEEeCCCCcc
Q 043942            2 NQGDWA--SEILGHKDSFSSLAFST--------------DGQLLASGGFH------GLVQNRDTSSRNLQCTVEGPRGGI   59 (216)
Q Consensus         2 ~~g~~~--~~~~~h~~~v~~~~~s~--------------~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~   59 (216)
                      .+|+.+  .++.+|...+..+++++              .+..++.++.+      +.|++||+...+ ...+..+...+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v  181 (415)
T 2hqs_A          103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPL  181 (415)
T ss_dssp             STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCE
T ss_pred             CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcc
Confidence            456666  55888888888888775              15667766654      799999997543 44444433322


Q ss_pred             ----------------cC---cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEE-EecCCCe--EEEEeCCCCcee
Q 043942           60 ----------------ED---STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTIC-TGSDNAT--LSIWNPKGGENF  117 (216)
Q Consensus        60 ----------------~~---~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-t~~~d~~--i~~wd~~~~~~~  117 (216)
                                      .+   ..|++||+++++.. .+..|...+.+++|+|||+.|+ +++.++.  |++||+.+++. 
T Consensus       182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-  259 (415)
T 2hqs_A          182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-  259 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-
Confidence                            33   49999999988775 4666888999999999999887 6666554  99999998765 


Q ss_pred             EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cC--eE-------------EeeeCCEEEEEEecCCCe
Q 043942          118 HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DG--KV-------------DGHIDAIQSLSVSAIRES  181 (216)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~--~i-------------~~~~~~i~~~~~~~~~~~  181 (216)
                      ..+..               +...+.+++|+|+|++|++++. ++  .+             ..+...+..++|+|+|++
T Consensus       260 ~~l~~---------------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~  324 (415)
T 2hqs_A          260 RQVTD---------------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKF  324 (415)
T ss_dssp             EECCC---------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSE
T ss_pred             EeCcC---------------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCE
Confidence            34443               6678999999999998887775 44  33             234567889999999999


Q ss_pred             EEEEeCC---CcEEEEEcccccc
Q 043942          182 LVSVSVD---GTARVFEIAEFRR  201 (216)
Q Consensus       182 l~s~~~d---~~v~vw~~~~~~~  201 (216)
                      |++++.+   ..|++||+.+++.
T Consensus       325 l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          325 MVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCE
T ss_pred             EEEEECcCCceEEEEEECCCCCE
Confidence            9988764   5899999987665

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=9e-20  Score=132.60  Aligned_cols=181  Identities=12%  Similarity=0.121  Sum_probs=130.4

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC-CceEEEEeCCC-Ccc------------------c-
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVEGPR-GGI------------------E-   60 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~-~~~------------------~-   60 (216)
                      ++++.. .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+. ..+                  . 
T Consensus        30 ~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  107 (297)
T 2ojh_A           30 RTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF  107 (297)
T ss_dssp             TTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT
T ss_pred             CCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC
Confidence            344443 5667889999999999999999987 88999999999 77665554442 111                  1 


Q ss_pred             -CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEE-EecCCCeEEEEeCCC-CceeEEeecccccccccceEEEee
Q 043942           61 -DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTIC-TGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        61 -~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                       ...|..++..++. ...+..+ ..+..++|+|+++.++ +++.++.+++|+++. +.....+..               
T Consensus       108 ~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------  170 (297)
T 2ojh_A          108 GKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH---------------  170 (297)
T ss_dssp             SSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC---------------
T ss_pred             CcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc---------------
Confidence             3455555555554 3344433 3488999999999887 777899999998642 223333433               


Q ss_pred             eecCeEEEEeCCCCcEEEEec-ccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCC-----------Cc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGC-VDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVD-----------GT  190 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~-~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d-----------~~  190 (216)
                      +...+.+++|+|++++++.++ .++.+               ..+...+..++|+|++++|++++.+           +.
T Consensus       171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  250 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR  250 (297)
T ss_dssp             SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred             CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence            667889999999999887665 35543               3445678899999999999888765           56


Q ss_pred             EEEEEcccccc
Q 043942          191 ARVFEIAEFRR  201 (216)
Q Consensus       191 v~vw~~~~~~~  201 (216)
                      |++||+.+++.
T Consensus       251 l~~~d~~~~~~  261 (297)
T 2ojh_A          251 VQLMDMDGGNV  261 (297)
T ss_dssp             EEEEETTSCSC
T ss_pred             EEEEecCCCCc
Confidence            99999987654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=2.2e-18  Score=128.65  Aligned_cols=194  Identities=9%  Similarity=0.052  Sum_probs=145.6

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCCc------------c---------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRGG------------I---------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~------------~---------   59 (216)
                      ++++.+..+... ..+..++|+|+|+++ ++...++.|.+||..+++....+..+...            +         
T Consensus        77 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  155 (353)
T 3vgz_A           77 VTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTV  155 (353)
T ss_dssp             TTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEE
T ss_pred             CCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEE
Confidence            456667776643 457789999999855 45566899999999999988877664311            1         


Q ss_pred             ------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceE
Q 043942           60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWM  133 (216)
Q Consensus        60 ------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  133 (216)
                            .++.|.+||+++++.+..+..+...+.+++|+|+++.+++++.++.+.+||+.+++....+.....        
T Consensus       156 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------  227 (353)
T 3vgz_A          156 YISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD--------  227 (353)
T ss_dssp             EEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS--------
T ss_pred             EEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC--------
Confidence                  378899999999998888875666689999999999999999999999999999988776653110        


Q ss_pred             EEeeeecCeEEEEeCCCCcEEEEeccc-CeE------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEcccc
Q 043942          134 ICTSLYDGVTCLSWPGTSKYLVTGCVD-GKV------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEF  199 (216)
Q Consensus       134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~i------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~  199 (216)
                         ++...+..++|+|+++++++++.+ +.+            .........++|+|++++++.++ .++.|.+||+.++
T Consensus       228 ---~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          228 ---GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             ---SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ---CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence               034467889999999977766554 655            11112235789999999665554 6899999999988


Q ss_pred             cceeecCC
Q 043942          200 RRATKAPS  207 (216)
Q Consensus       200 ~~~~~~~~  207 (216)
                      +....++.
T Consensus       305 ~~~~~~~~  312 (353)
T 3vgz_A          305 KVVKTFDT  312 (353)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEec
Confidence            76655443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=5.5e-21  Score=147.12  Aligned_cols=160  Identities=17%  Similarity=0.139  Sum_probs=116.1

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD   93 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~   93 (216)
                      ...++.+++++++.++++++.++ +++|+.......   .....  ....  +....   ....+ .+...|.+++|+|+
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~--~~~~--~~~~~---~~~~~-~~~~~v~~l~~spd  103 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGD--DPNK--IVDKV---QGLLV-PMKFPIHHLALSCD  103 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTC--CTTC--EEECC---CCEEE-CCSSCEEEEEECTT
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---ccccc--Cccc--ccccC---ccccc-cCCCcccEEEEcCC
Confidence            34588999999999999999887 888875322100   00000  0000  11111   11122 35678999999999


Q ss_pred             CcEEE----EecCCCeEEEEeCCCC--------ceeEEeecccccccccceEEEeeeecCeEEEEeCCC-CcEEEEeccc
Q 043942           94 GKTIC----TGSDNATLSIWNPKGG--------ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKYLVTGCVD  160 (216)
Q Consensus        94 ~~~l~----t~~~d~~i~~wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~  160 (216)
                      +++|+    +++.|+.|++||++++        +.+..+..            ..+|...|.+++|+|+ +.+|++++.|
T Consensus       104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~------------~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A          104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL------------LKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC------------CCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec------------cCCCCCceEEEEECCCCCCEEEEEECC
Confidence            99999    8899999999998754        11111111            1127899999999998 7899999999


Q ss_pred             CeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          161 GKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       161 ~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      |.+              ..|...|.+++|+|+|++|++++.||.|++||++
T Consensus       172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            988              3467799999999999999999999999999998

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=2.8e-18  Score=127.20  Aligned_cols=201  Identities=9%  Similarity=0.014  Sum_probs=145.2

Q ss_pred             CCCceeEEeecccc--ceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCC------C--cc-----------
Q 043942            2 NQGDWASEILGHKD--SFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPR------G--GI-----------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~--~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~------~--~~-----------   59 (216)
                      ++++.+..+.....  .+..++|+|+|+++ +++..++.|.+||+.+++....+....      .  .+           
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~   98 (337)
T 1pby_B           19 EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred             CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence            46777777763322  47899999999765 566678899999999998887776432      1  11           


Q ss_pred             c--------------CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc-
Q 043942           60 E--------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS-  124 (216)
Q Consensus        60 ~--------------~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-  124 (216)
                      .              ++.|.+||+.+++.+..+.. ...+.+++|+|++++++++  ++.|.+||+.+++....+.... 
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~  175 (337)
T 1pby_B           99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW  175 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred             EecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence            2              48999999998888777764 4568899999999988888  6889999999988776665422 


Q ss_pred             ---ccccccc-----------------------------------eEE------------EeeeecCeEEEEeCCCCcEE
Q 043942          125 ---LEFSLNY-----------------------------------WMI------------CTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus       125 ---~~~~~~~-----------------------------------~~~------------~~~~~~~v~~~~~~~~~~~l  154 (216)
                         ....+..                                   ...            ...+...+..++|+|+++++
T Consensus       176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  255 (337)
T 1pby_B          176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA  255 (337)
T ss_dssp             TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence               0000000                                   000            11123456789999999998


Q ss_pred             EEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          155 VTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       155 ~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      +++  ++.+             ......+.+++|+|+|++|++++.++.|++||+.+++....++.
T Consensus       256 ~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          256 FGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            887  4555             22235678999999999999888899999999998877655443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=9.8e-19  Score=130.58  Aligned_cols=178  Identities=14%  Similarity=0.060  Sum_probs=140.2

Q ss_pred             cccceEEEEEccCCCEEEEEcC-------CCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942           13 HKDSFSSLAFSTDGQLLASGGF-------HGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~-------d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~   69 (216)
                      ....+..++|+|+++++++++.       ++.|.+||..+++....+.......                .++.|.+||.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            3456889999999998888774       5689999999999888776533221                5789999999


Q ss_pred             CCcceeeeeeccCCC---------eeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           70 DRGAYLNMFSGHGSG---------LTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      .+++.+..+..+...         +.+++|+|+++.+++++  .++.|.+||..+++....+..               +
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~---------------~  183 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN---------------T  183 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC---------------C
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC---------------C
Confidence            999888777654322         68899999999877765  588999999999988877763               3


Q ss_pred             ecCeEEEEeCCCCcEEEEecccCeE--------------E----eeeCCEEEEEEecCCCeEEEEeC-CCcEEEEEcccc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVDGKV--------------D----GHIDAIQSLSVSAIRESLVSVSV-DGTARVFEIAEF  199 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~~~i--------------~----~~~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~~  199 (216)
                      ...+..++|+|+++++++++.++.+              .    ++...+..++|+|++++++.++. ++.|.+||+.++
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            4457889999999999998888877              1    13445788999999997776654 599999999887


Q ss_pred             cceeec
Q 043942          200 RRATKA  205 (216)
Q Consensus       200 ~~~~~~  205 (216)
                      +....+
T Consensus       264 ~~~~~~  269 (353)
T 3vgz_A          264 NILAKV  269 (353)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            765443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.83  E-value=5.1e-18  Score=134.00  Aligned_cols=188  Identities=9%  Similarity=0.015  Sum_probs=143.4

Q ss_pred             CCCceeEEeeccccceEEEEEcc----CCCEEEEEcC-CCcEEEEECCCCceEEEEeCCC----------C-cc------
Q 043942            2 NQGDWASEILGHKDSFSSLAFST----DGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPR----------G-GI------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~----~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~----------~-~~------   59 (216)
                      ++++++.++.. ...+..++|+|    +|+++++++. +++|.+||..+++.++.+..+.          . .+      
T Consensus       210 ~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s  288 (543)
T 1nir_A          210 KEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS  288 (543)
T ss_dssp             SSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             CCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence            46778888874 45679999999    9999999884 8999999999888777665310          0 00      


Q ss_pred             -------------------------------------------------------cCcEEEEEECCCcceeeeeec----
Q 043942           60 -------------------------------------------------------EDSTVWMWNADRGAYLNMFSG----   80 (216)
Q Consensus        60 -------------------------------------------------------~~~~v~i~d~~~~~~~~~~~~----   80 (216)
                                                                             .+++|.+||..+++.+..+..    
T Consensus       289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p  368 (543)
T 1nir_A          289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  368 (543)
T ss_dssp             SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred             CCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence                                                                   467788888888877776653    


Q ss_pred             cCCCeeEEEEcCC-CcEEEEec-CCCeEEEEeCCC-------CceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942           81 HGSGLTCGDFTTD-GKTICTGS-DNATLSIWNPKG-------GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS  151 (216)
Q Consensus        81 ~~~~v~~~~~~~~-~~~l~t~~-~d~~i~~wd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  151 (216)
                      |.+....+ ++|+ +..++++. .|++|.+||+.+       .+.++.+..               +...+..++++|++
T Consensus       369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~---------------~g~~~~~v~~~pdg  432 (543)
T 1nir_A          369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG---------------QGGGSLFIKTHPKS  432 (543)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC---------------SCSCCCCEECCTTC
T ss_pred             CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc---------------CCCCceEEEcCCCC
Confidence            54433333 4676 66677765 689999999998       778888876               77778899999999


Q ss_pred             cEEEEecc-------cCeE-----------------------EeeeCCEEEEEEecCCCeEEEE-----eCCCcEEEEEc
Q 043942          152 KYLVTGCV-------DGKV-----------------------DGHIDAIQSLSVSAIRESLVSV-----SVDGTARVFEI  196 (216)
Q Consensus       152 ~~l~~~~~-------~~~i-----------------------~~~~~~i~~~~~~~~~~~l~s~-----~~d~~v~vw~~  196 (216)
                      ++|++++.       ++.|                       ..+...+..+.|+|+|+.+.++     +.|+.|.|||.
T Consensus       433 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          433 SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence            99999872       4444                       1235688999999999988865     24799999999


Q ss_pred             ccccceeecC
Q 043942          197 AEFRRATKAP  206 (216)
Q Consensus       197 ~~~~~~~~~~  206 (216)
                      ++++....++
T Consensus       513 ~t~~~~~~i~  522 (543)
T 1nir_A          513 KTLKLKAVVK  522 (543)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCceEEEeec
Confidence            9998877665

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.83  E-value=4.8e-18  Score=134.17  Aligned_cols=189  Identities=12%  Similarity=0.083  Sum_probs=139.5

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEEC--CCCceEEEEeCC--------------CCcc------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDT--SSRNLQCTVEGP--------------RGGI------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~--~~~~~~~~~~~~--------------~~~~------   59 (216)
                      .+++++.++..+.. +.+++|+|+|++|++++.|+.|++||+  .+++.+.++...              ....      
T Consensus       167 ~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          167 DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred             CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc
Confidence            56888888884433 889999999999999999999999999  788777666531              1211      


Q ss_pred             cCcEEEEEECCCcceeeeeec----------cC-CCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeE--Eeecccc
Q 043942           60 EDSTVWMWNADRGAYLNMFSG----------HG-SGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFH--AIRRSSL  125 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~--~~~~~~~  125 (216)
                      .+++|.+||..+++++..+..          |. ..+..+.++|++. ++++...++.|.+||+.+.+.+.  .+.    
T Consensus       246 ~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~----  321 (543)
T 1nir_A          246 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG----  321 (543)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE----
T ss_pred             cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec----
Confidence            578999999999998887764          22 2688999999765 55677789999999999876544  222    


Q ss_pred             cccccceEEEeeeecCeEEEEeCCCCcEEEEec-ccCeE--------------E----eeeCCEEEEEEecC-CCeEEEE
Q 043942          126 EFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-VDGKV--------------D----GHIDAIQSLSVSAI-RESLVSV  185 (216)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~i--------------~----~~~~~i~~~~~~~~-~~~l~s~  185 (216)
                                  +...+..+.|+|+|+++++++ .++.+              .    .|......+ ++|+ +.+++++
T Consensus       322 ------------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~  388 (543)
T 1nir_A          322 ------------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTS  388 (543)
T ss_dssp             ------------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred             ------------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEec
Confidence                        345677899999999876554 46666              1    243333333 4677 6667776


Q ss_pred             e-CCCcEEEEEccc-------ccceeecCCc
Q 043942          186 S-VDGTARVFEIAE-------FRRATKAPSY  208 (216)
Q Consensus       186 ~-~d~~v~vw~~~~-------~~~~~~~~~~  208 (216)
                      . .|++|.+||+.+       .+.+..++.+
T Consensus       389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~  419 (543)
T 1nir_A          389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQ  419 (543)
T ss_dssp             BSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             cCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence            5 589999999988       6666665554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.82  E-value=7.2e-18  Score=125.01  Aligned_cols=183  Identities=15%  Similarity=0.135  Sum_probs=128.8

Q ss_pred             CCCce-eEEeeccccceEEEEEccCCCEEEEEcCCC---cEEEEECCCCceEEEEeCCCCcc----------------cC
Q 043942            2 NQGDW-ASEILGHKDSFSSLAFSTDGQLLASGGFHG---LVQNRDTSSRNLQCTVEGPRGGI----------------ED   61 (216)
Q Consensus         2 ~~g~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~~----------------~~   61 (216)
                      ++++. ...+..+..+..+++|+|+|++++++..++   .|.+||+.+++.+..+..+....                .+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  149 (331)
T 3u4y_A           70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS  149 (331)
T ss_dssp             SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT
T ss_pred             CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCC
Confidence            45666 667777776666699999999999555553   89999999998887776543321                44


Q ss_pred             cE-EEEEECCCccee----eeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCce---eEEeecccccccccce
Q 043942           62 ST-VWMWNADRGAYL----NMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGEN---FHAIRRSSLEFSLNYW  132 (216)
Q Consensus        62 ~~-v~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~  132 (216)
                      +. +.+|++.....+    .........+..++|+|+++++ +++..++.|.+||+.+++.   +..+.           
T Consensus       150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-----------  218 (331)
T 3u4y_A          150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-----------  218 (331)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----------
T ss_pred             CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----------
Confidence            56 999998753322    1122344568999999999965 4555789999999998887   55555           


Q ss_pred             EEEeeeecCeEEEEeCCCCcEEEEecc-cCeE---------E------ee-----eC---CEEEEEEecCCCeEEEEe-C
Q 043942          133 MICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV---------D------GH-----ID---AIQSLSVSAIRESLVSVS-V  187 (216)
Q Consensus       133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i---------~------~~-----~~---~i~~~~~~~~~~~l~s~~-~  187 (216)
                           ....+..++|+|+|+++++++. ++.+         .      ..     ..   ....++|+|+|++|++++ .
T Consensus       219 -----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          219 -----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             -----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             -----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence                 3356788999999997766543 4445         0      00     01   123479999999886555 4


Q ss_pred             CCcEEEEEccccc
Q 043942          188 DGTARVFEIAEFR  200 (216)
Q Consensus       188 d~~v~vw~~~~~~  200 (216)
                      ++.|.+||+....
T Consensus       294 ~~~v~v~d~~~~~  306 (331)
T 3u4y_A          294 SRELKVFTISGKV  306 (331)
T ss_dssp             TTEEEEEETTSCE
T ss_pred             CCcEEEEEecCCc
Confidence            6799999998654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=8e-19  Score=143.32  Aligned_cols=187  Identities=10%  Similarity=0.035  Sum_probs=132.6

Q ss_pred             ccceEEEEEccCCCEEEEEcC-CC-----cEEEEECCCCceEEEEeCCCCc------------------------c----
Q 043942           14 KDSFSSLAFSTDGQLLASGGF-HG-----LVQNRDTSSRNLQCTVEGPRGG------------------------I----   59 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~-d~-----~v~vwd~~~~~~~~~~~~~~~~------------------------~----   59 (216)
                      ...+.+++|+|||++|++++. |+     .|++||+.+++....+..+...                        +    
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            346899999999999999998 88     8999999999877666543211                        1    


Q ss_pred             -----------cCcEEEEEECCCcc--eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc
Q 043942           60 -----------EDSTVWMWNADRGA--YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE  126 (216)
Q Consensus        60 -----------~~~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~  126 (216)
                                 .++.|++||+.++.  ....+..|...+..++|+|||++|++++ ++.|++||+.+++...........
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~  194 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT  194 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence                       45889999999873  4456677888899999999999999887 468999999987765443321000


Q ss_pred             ccccc--eEEEeeeecCeEEEEeCCCCcEEEEecccC---------------------------------eE------E-
Q 043942          127 FSLNY--WMICTSLYDGVTCLSWPGTSKYLVTGCVDG---------------------------------KV------D-  164 (216)
Q Consensus       127 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---------------------------------~i------~-  164 (216)
                      . ...  ..+.......+..+.|+|||++|++++.++                                 .+      . 
T Consensus       195 ~-~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          195 I-GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             E-EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             e-eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            0 000  000000011247799999999998886553                                 22      1 


Q ss_pred             ----------eeeCCEEEEEEecCCCeEEEEeC-----CCcEEEEEccccccee
Q 043942          165 ----------GHIDAIQSLSVSAIRESLVSVSV-----DGTARVFEIAEFRRAT  203 (216)
Q Consensus       165 ----------~~~~~i~~~~~~~~~~~l~s~~~-----d~~v~vw~~~~~~~~~  203 (216)
                                .|...+..++| |||++|++++.     +..|++||+.+++...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~  326 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV  326 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence                      24456889999 99999987653     5689999998876543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.81  E-value=1.2e-17  Score=124.11  Aligned_cols=171  Identities=11%  Similarity=0.100  Sum_probs=122.6

Q ss_pred             ccccceEEEEEccCCCEEEEEcCC-CcEEEEECC--CCc--eEEEEeCCCCcc----------------cCcEEEEEEC-
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFH-GLVQNRDTS--SRN--LQCTVEGPRGGI----------------EDSTVWMWNA-   69 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d-~~v~vwd~~--~~~--~~~~~~~~~~~~----------------~~~~v~i~d~-   69 (216)
                      .|...+.+++|+|+|++|++++.+ +.|++|++.  +++  .+..+..+....                .++.|.+||+ 
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            467788999999999988888876 999999997  554  334444322111                4888999999 


Q ss_pred             --CCcceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCC-CceeEEe----ecccccccccceEEEeeeecC
Q 043942           70 --DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKG-GENFHAI----RRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        70 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  141 (216)
                        .+.+.+..+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ ++.....    ..              .....
T Consensus       115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------------~~~~~  179 (343)
T 1ri6_A          115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT--------------VEGAG  179 (343)
T ss_dssp             TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC--------------STTCC
T ss_pred             CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc--------------CCCCC
Confidence              444455555533 4588999999999888777 899999999987 5443221    11              02346


Q ss_pred             eEEEEeCCCCcEEEEec-ccCeEE---------------ee---------eCCEEEEEEecCCCeEE-EEeCCCcEEEEE
Q 043942          142 VTCLSWPGTSKYLVTGC-VDGKVD---------------GH---------IDAIQSLSVSAIRESLV-SVSVDGTARVFE  195 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~-~~~~i~---------------~~---------~~~i~~~~~~~~~~~l~-s~~~d~~v~vw~  195 (216)
                      +..++|+|+++++++++ .++.+.               ..         ...+..++|+|+|++|+ ++..++.|++|+
T Consensus       180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d  259 (343)
T 1ri6_A          180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS  259 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence            78899999999776554 666650               00         12455799999998877 455789999999


Q ss_pred             cc
Q 043942          196 IA  197 (216)
Q Consensus       196 ~~  197 (216)
                      +.
T Consensus       260 ~~  261 (343)
T 1ri6_A          260 VS  261 (343)
T ss_dssp             EC
T ss_pred             Ec
Confidence            98

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.80  E-value=2.3e-17  Score=122.29  Aligned_cols=157  Identities=9%  Similarity=-0.019  Sum_probs=114.1

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcce-eeeee
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAY-LNMFS   79 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~-~~~~~   79 (216)
                      ++++.+..+..+...+ +++|+|+|+++++++. ++.|.+||+                          .+++. ...+.
T Consensus        28 ~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~--------------------------~~~~~~~~~~~   80 (331)
T 3u4y_A           28 DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET--------------------------QLEPPKVVAIQ   80 (331)
T ss_dssp             TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC--------------------------SSSSCEEEEEE
T ss_pred             cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC--------------------------CCCceeEEecc
Confidence            5678888877776777 9999999997776664 555555554                          44444 44455


Q ss_pred             ccCCCeeEEEEcCCCcEEEEecCCC---eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942           80 GHGSGLTCGDFTTDGKTICTGSDNA---TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT  156 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  156 (216)
                      .+.....+++|+|++++++++..++   .|.+||+.+++.+..+.                .......++|+|+|+++++
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~----------------~~~~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP----------------IPYDAVGIAISPNGNGLIL  144 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----------------CCTTEEEEEECTTSSCEEE
T ss_pred             cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE----------------CCCCccceEECCCCCEEEE
Confidence            5555555599999999999665553   89999999998877765                3445689999999986655


Q ss_pred             e-cccCe-EE------------------eeeCCEEEEEEecCCCeEEE-EeCCCcEEEEEcccccc
Q 043942          157 G-CVDGK-VD------------------GHIDAIQSLSVSAIRESLVS-VSVDGTARVFEIAEFRR  201 (216)
Q Consensus       157 ~-~~~~~-i~------------------~~~~~i~~~~~~~~~~~l~s-~~~d~~v~vw~~~~~~~  201 (216)
                      + ..++. +.                  .....+..++|+|+|++++. +..++.|++||+.+++.
T Consensus       145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            5 44355 41                  11246789999999996654 45689999999998776

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=6e-17  Score=120.61  Aligned_cols=199  Identities=8%  Similarity=-0.021  Sum_probs=138.2

Q ss_pred             CCCceeEEeeccc-cceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCC---------cc-----------
Q 043942            2 NQGDWASEILGHK-DSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRG---------GI-----------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~-~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~---------~~-----------   59 (216)
                      ++++.+.++..+. ..+..++|+|+|+++ ++...++.|.+||+.+++....+..+..         .+           
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  108 (349)
T 1jmx_B           29 ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA  108 (349)
T ss_dssp             TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred             CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEE
Confidence            4677777776543 257899999999865 4566789999999999988877764321         11           


Q ss_pred             --c------------CcEEEEEECCCcce---eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           60 --E------------DSTVWMWNADRGAY---LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        60 --~------------~~~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                        .            ++.|.+||+.+++.   +..+. +...+.+++|+|+++ +++++.  .|.+||+.+++....+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~  184 (349)
T 1jmx_B          109 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPL  184 (349)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECS
T ss_pred             EcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccc
Confidence              2            48999999988543   33333 344688999999999 555544  399999999987776654


Q ss_pred             ccccc----------------------cccceEE-------------------------------EeeeecCeEEEEeCC
Q 043942          123 SSLEF----------------------SLNYWMI-------------------------------CTSLYDGVTCLSWPG  149 (216)
Q Consensus       123 ~~~~~----------------------~~~~~~~-------------------------------~~~~~~~v~~~~~~~  149 (216)
                      .....                      .+.....                               .......+..++|+|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  264 (349)
T 1jmx_B          185 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP  264 (349)
T ss_dssp             TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS
T ss_pred             cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecC
Confidence            32000                      0000000                               001123567888999


Q ss_pred             -CCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          150 -TSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       150 -~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                       ++++++++  ++.+             ......+.+++|+|++++|++++.++.|++||+.+++.+..++
T Consensus       265 ~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          265 KDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             SCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence             99998888  5555             1233457899999999999888889999999999888765543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=8.7e-18  Score=136.83  Aligned_cols=184  Identities=12%  Similarity=0.059  Sum_probs=125.7

Q ss_pred             CCCceeEEeecccc---ceEEEEEccCCCEEEEEcCC---------CcEEEEECCCCceEEEEeCCCC---cc-------
Q 043942            2 NQGDWASEILGHKD---SFSSLAFSTDGQLLASGGFH---------GLVQNRDTSSRNLQCTVEGPRG---GI-------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~d---------~~v~vwd~~~~~~~~~~~~~~~---~~-------   59 (216)
                      ++|+....+.+|..   .|.+++|||||++|++++.+         +.+.+||+.+++. ..+.....   .+       
T Consensus        45 ~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP  123 (723)
T 1xfd_A           45 ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP  123 (723)
T ss_dssp             GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS
T ss_pred             CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC
Confidence            45677777776664   49999999999999999764         7788999998876 33322111   01       


Q ss_pred             --------cCcEEEEEECCCcceeeeeeccCCCe------------------eEEEEcCCCcEEEEecCCC---------
Q 043942           60 --------EDSTVWMWNADRGAYLNMFSGHGSGL------------------TCGDFTTDGKTICTGSDNA---------  104 (216)
Q Consensus        60 --------~~~~v~i~d~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~t~~~d~---------  104 (216)
                              .++.|++||+.+++.......+...+                  .+++|+|||+.|++++.|+         
T Consensus       124 dG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~  203 (723)
T 1xfd_A          124 KGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (723)
T ss_dssp             STTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             CCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence                    56799999999887766555444333                  7899999999999887543         


Q ss_pred             -------------------------eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942          105 -------------------------TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus       105 -------------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                                               .|++||+.+++....+......         ..+...+..++|+|||+++++...
T Consensus       204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~SpDg~~l~~~~~  274 (723)
T 1xfd_A          204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP---------RMREYYITMVKWATSTKVAVTWLN  274 (723)
T ss_dssp             CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG---------GGSSEEEEEEEESSSSEEEEEEEE
T ss_pred             ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC---------CCccceeEEEEEeCCCeEEEEEEc
Confidence                                     7889999887754544431000         002467889999999998876543


Q ss_pred             c----CeE--------------Ee-eeCCE----EEEEEecCCCeEEE--EeCCC------cEEEEE
Q 043942          160 D----GKV--------------DG-HIDAI----QSLSVSAIRESLVS--VSVDG------TARVFE  195 (216)
Q Consensus       160 ~----~~i--------------~~-~~~~i----~~~~~~~~~~~l~s--~~~d~------~v~vw~  195 (216)
                      .    ..+              .. +...+    ..++|+|||+.|+.  +..++      .|++||
T Consensus       275 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          275 RAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            2    222              11 22333    27899999998775  44566      466677

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.79  E-value=1e-16  Score=119.06  Aligned_cols=181  Identities=15%  Similarity=0.189  Sum_probs=119.8

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEc-CCCcEEEEECC---CCceEEEEeCCCCcc----------------cCcEEEE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTS---SRNLQCTVEGPRGGI----------------EDSTVWM   66 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~---~~~~~~~~~~~~~~~----------------~~~~v~i   66 (216)
                      +..+..+. .+..++|+|++++|++++ .++.|.+||+.   ..+....+..+....                .++.|.+
T Consensus        77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~  155 (343)
T 1ri6_A           77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICL  155 (343)
T ss_dssp             EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred             ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEE
Confidence            34454444 788999999999877665 48889999994   334444444322211                5789999


Q ss_pred             EECCC-cceee----eeec-cCCCeeEEEEcCCCcEEEE-ecCCCeEEEEeCCC--Cce--eEEeecccccccccceEEE
Q 043942           67 WNADR-GAYLN----MFSG-HGSGLTCGDFTTDGKTICT-GSDNATLSIWNPKG--GEN--FHAIRRSSLEFSLNYWMIC  135 (216)
Q Consensus        67 ~d~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~l~t-~~~d~~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~~  135 (216)
                      ||+.+ ++...    .+.. ....+..++|+|+++++++ +..++.+.+||+..  ++.  ...+......  .      
T Consensus       156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~--~------  227 (343)
T 1ri6_A          156 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN--F------  227 (343)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT--C------
T ss_pred             EEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc--c------
Confidence            99987 54432    2222 3347889999999997654 45899999999953  432  2222110000  0      


Q ss_pred             eeeecCeEEEEeCCCCcEEEE-ecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEc
Q 043942          136 TSLYDGVTCLSWPGTSKYLVT-GCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEI  196 (216)
Q Consensus       136 ~~~~~~v~~~~~~~~~~~l~~-~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~  196 (216)
                       .....+..++|+|+++++++ ...++.+                 ......+..++|+|+|++|++++ .++.+.+|++
T Consensus       228 -~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          228 -SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             -CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             -cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence             01345678999999988774 4456665                 11123477899999999888877 5899999966


Q ss_pred             c
Q 043942          197 A  197 (216)
Q Consensus       197 ~  197 (216)
                      .
T Consensus       307 d  307 (343)
T 1ri6_A          307 V  307 (343)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.79  E-value=4.8e-18  Score=138.74  Aligned_cols=166  Identities=13%  Similarity=0.084  Sum_probs=120.8

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCC---ceEEEEeCCCCcc---------------cCcEEEEEECCCcceeee
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSR---NLQCTVEGPRGGI---------------EDSTVWMWNADRGAYLNM   77 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~~~   77 (216)
                      .|.+++|||||++|++++. +.|++||+.++   +. ..+..+...+               .++.|++||+.+++....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~-~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV-RQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC-CBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE-EEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence            3889999999999999886 99999999887   33 2232222211               567899999998876655


Q ss_pred             eeccCCC----------------eeEEEEcCCCcEEEEecCCC---------------------------------eEEE
Q 043942           78 FSGHGSG----------------LTCGDFTTDGKTICTGSDNA---------------------------------TLSI  108 (216)
Q Consensus        78 ~~~~~~~----------------v~~~~~~~~~~~l~t~~~d~---------------------------------~i~~  108 (216)
                      ...+...                +..++|+|||++|++++.|+                                 .|++
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            4433332                47899999999999987665                                 7899


Q ss_pred             EeCCC-CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-----cCeE--------------EeeeC
Q 043942          109 WNPKG-GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-----DGKV--------------DGHID  168 (216)
Q Consensus       109 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~~~i--------------~~~~~  168 (216)
                      ||+.+ ++........             .+...+..++| |||++|++++.     +..+              ..+..
T Consensus       268 ~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~  333 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGK-------------EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP  333 (741)
T ss_dssp             ECSSTTCCCEEECCCS-------------CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS
T ss_pred             EECCCCCceEEecCCC-------------CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC
Confidence            99988 7654433210             15567899999 99999887654     2222              22222


Q ss_pred             ----CEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          169 ----AIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       169 ----~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                          .+..++|+|||+++++++.|+.+++|.+.
T Consensus       334 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          334 TWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             SCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             CcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence                34578999999988899999988888776

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.79  E-value=1.5e-17  Score=135.10  Aligned_cols=177  Identities=11%  Similarity=0.074  Sum_probs=125.9

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc--c------------cCcEEEEEECCC-----ccee
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG--I------------EDSTVWMWNADR-----GAYL   75 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--~------------~~~~v~i~d~~~-----~~~~   75 (216)
                      ..|.+++|+|| +.++.+. ++.+++||+.+++...........  +            .++.|++||+.+     ++..
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence            46999999999 6666554 599999999988765544321111  0            688999999998     7765


Q ss_pred             eeeeccCCC--------------eeEEEEcCCCcEEEEec---------------------------------CCCeEEE
Q 043942           76 NMFSGHGSG--------------LTCGDFTTDGKTICTGS---------------------------------DNATLSI  108 (216)
Q Consensus        76 ~~~~~~~~~--------------v~~~~~~~~~~~l~t~~---------------------------------~d~~i~~  108 (216)
                      .....+...              +.+++|+|||++|++++                                 .+..|++
T Consensus       160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~  239 (706)
T 2z3z_A          160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI  239 (706)
T ss_dssp             ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred             EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence            544433332              48999999999999987                                 4577999


Q ss_pred             EeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC-----eE--------------E--eee
Q 043942          109 WNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG-----KV--------------D--GHI  167 (216)
Q Consensus       109 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----~i--------------~--~~~  167 (216)
                      ||+.+++........             .+...+..++|+|||+++++++.++     .+              .  .+.
T Consensus       240 ~d~~~~~~~~~~~~~-------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~  306 (706)
T 2z3z_A          240 YHLATGKTVYLQTGE-------------PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK  306 (706)
T ss_dssp             EETTTTEEEECCCCS-------------CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred             EECCCCceEeeccCC-------------CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence            999988754433210             1456789999999999988876554     22              1  111


Q ss_pred             C---CEEEEEEec--CCCeEEEEeCCCcEEEEEcc-cccceeecC
Q 043942          168 D---AIQSLSVSA--IRESLVSVSVDGTARVFEIA-EFRRATKAP  206 (216)
Q Consensus       168 ~---~i~~~~~~~--~~~~l~s~~~d~~v~vw~~~-~~~~~~~~~  206 (216)
                      .   .+..++|+|  +|+++++++.|+.+++|.+. +++....+.
T Consensus       307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~  351 (706)
T 2z3z_A          307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT  351 (706)
T ss_dssp             SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred             CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence            1   135679999  99999999999999999887 444444443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=4.7e-16  Score=116.09  Aligned_cols=187  Identities=13%  Similarity=0.167  Sum_probs=121.7

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEc-CCCcEEEEECCC-C--ceEEEEeCCC--------------------Ccc--
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSS-R--NLQCTVEGPR--------------------GGI--   59 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~-~--~~~~~~~~~~--------------------~~~--   59 (216)
                      .+..+..+...+..++|+|+|++|++++ .++.|.+|++.. +  +.+..+....                    ..+  
T Consensus        77 ~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v  156 (347)
T 3hfq_A           77 KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV  156 (347)
T ss_dssp             EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred             EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence            3444455777889999999999888887 679999999963 3  2233332210                    001  


Q ss_pred             ---cCcEEEEEECC-Cccee--eeeecc-CCCeeEEEEcCCCcEEEE-ecCCCeEEEEeCCC--Ccee--EEeecccccc
Q 043942           60 ---EDSTVWMWNAD-RGAYL--NMFSGH-GSGLTCGDFTTDGKTICT-GSDNATLSIWNPKG--GENF--HAIRRSSLEF  127 (216)
Q Consensus        60 ---~~~~v~i~d~~-~~~~~--~~~~~~-~~~v~~~~~~~~~~~l~t-~~~d~~i~~wd~~~--~~~~--~~~~~~~~~~  127 (216)
                         .++.|.+||+. +++..  ..+..+ ...+..++|+|+|+++++ ...++.+.+|++..  ++..  ..+...... 
T Consensus       157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~-  235 (347)
T 3hfq_A          157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD-  235 (347)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT-
T ss_pred             EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC-
Confidence               57789999998 45432  222222 236788999999996655 56789999999874  4432  222210000 


Q ss_pred             cccceEEEeeeecCeEEEEeCCCCcEEEEe-cccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeC-C
Q 043942          128 SLNYWMICTSLYDGVTCLSWPGTSKYLVTG-CVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSV-D  188 (216)
Q Consensus       128 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~-d  188 (216)
                       .       .....+..++|+|+|++++++ ..++.+                 ..+...+..++|+|+|++|++++. +
T Consensus       236 -~-------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  307 (347)
T 3hfq_A          236 -Y-------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT  307 (347)
T ss_dssp             -C-------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred             -C-------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence             0       011457889999999987554 445655                 122345789999999998888776 4


Q ss_pred             CcEEEEEc--ccccc
Q 043942          189 GTARVFEI--AEFRR  201 (216)
Q Consensus       189 ~~v~vw~~--~~~~~  201 (216)
                      +.+.+|++  .+++.
T Consensus       308 ~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          308 DNATLYARDLTSGKL  322 (347)
T ss_dssp             TEEEEEEECTTTCCE
T ss_pred             CcEEEEEEeCCCCeE
Confidence            89999955  44443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.77  E-value=2.1e-18  Score=140.47  Aligned_cols=179  Identities=9%  Similarity=0.056  Sum_probs=127.7

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc---c----------------c---------CcEEEEE
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG---I----------------E---------DSTVWMW   67 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---~----------------~---------~~~v~i~   67 (216)
                      .+.+++|+|||+++++ +.|+.|++||..+++....+..+...   +                .         ++.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999997776 78999999999999887777665431   1                1         3789999


Q ss_pred             ECCCcce--eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee-------
Q 043942           68 NADRGAY--LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL-------  138 (216)
Q Consensus        68 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  138 (216)
                      |+.+++.  +.....|...+..++|+|||+.|++++. +.|++||+.+++............      ...++       
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------~~~g~~~~v~~e  169 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------IYNGLSDWLYEE  169 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT------EEEEECCHHHHH
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc------eECcccceeEEE
Confidence            9998875  2222334455889999999999999876 789999999887765544311000      00001       


Q ss_pred             --ecCeEEEEeCCCCcEEEEecccC----------------------------------eE--------------Ee---
Q 043942          139 --YDGVTCLSWPGTSKYLVTGCVDG----------------------------------KV--------------DG---  165 (216)
Q Consensus       139 --~~~v~~~~~~~~~~~l~~~~~~~----------------------------------~i--------------~~---  165 (216)
                        ...+..+.|+|||++|++++.++                                  .+              ..   
T Consensus       170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~  249 (723)
T 1xfd_A          170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (723)
T ss_dssp             TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence              11347899999999999887542                                  23              11   


Q ss_pred             ---eeCCEEEEEEecCCCeEEEEeC----CCcEEEEEcccccce
Q 043942          166 ---HIDAIQSLSVSAIRESLVSVSV----DGTARVFEIAEFRRA  202 (216)
Q Consensus       166 ---~~~~i~~~~~~~~~~~l~s~~~----d~~v~vw~~~~~~~~  202 (216)
                         +...+..++|+|||++|++.+.    +..|++||+.+++..
T Consensus       250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~  293 (723)
T 1xfd_A          250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (723)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence               1346788999999998876643    357999999887643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.77  E-value=2.8e-18  Score=136.67  Aligned_cols=165  Identities=15%  Similarity=-0.000  Sum_probs=117.5

Q ss_pred             cccceEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcc--------------------------------
Q 043942           13 HKDSFSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGI--------------------------------   59 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~--------------------------------   59 (216)
                      +..+|++++|+|||++||+++. ||++++|++.+++..+....+...+                                
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence            3568999999999999999887 9999999986543322111110000                                


Q ss_pred             ------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC----Ce
Q 043942           60 ------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN----AT  105 (216)
Q Consensus        60 ------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d----~~  105 (216)
                                                    .++.+.+||+.+++...... +..  .+++|+|||++|++++.+    +.
T Consensus       100 ~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A          100 PGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             TTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEE
T ss_pred             CCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeE
Confidence                                          22223355555554333322 222  789999999999988877    78


Q ss_pred             EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC--eE-------------EeeeCCE
Q 043942          106 LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG--KV-------------DGHIDAI  170 (216)
Q Consensus       106 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~i-------------~~~~~~i  170 (216)
                      |++||+.+++.. .+..               +...+..++|+|||+.|+++..++  .+             ..|...+
T Consensus       177 i~~~d~~~g~~~-~l~~---------------~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  240 (582)
T 3o4h_A          177 LFTSNLSSGGLR-VFDS---------------GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDF  240 (582)
T ss_dssp             EEEEETTTCCCE-EECC---------------SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHH
T ss_pred             EEEEcCCCCCce-Eeec---------------CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcCh
Confidence            999999988765 3443               667789999999999999877777  44             1233344


Q ss_pred             EEEE--------EecCCCeEEEEeCCCcEEEEEc
Q 043942          171 QSLS--------VSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       171 ~~~~--------~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                      ..++        |+|||.++++++.|+.+++|++
T Consensus       241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            4455        9999988889999999999998

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.75  E-value=9.2e-16  Score=115.16  Aligned_cols=171  Identities=17%  Similarity=0.154  Sum_probs=115.1

Q ss_pred             cccceEEEEEccCCCEEEEEcCC----CcEEEEECCC--Cce--EEEEeCCCCcc---------------cCcEEEEEEC
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFH----GLVQNRDTSS--RNL--QCTVEGPRGGI---------------EDSTVWMWNA   69 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d----~~v~vwd~~~--~~~--~~~~~~~~~~~---------------~~~~v~i~d~   69 (216)
                      +...+..++|+|+|++|++++.+    +.|.+|++..  ++.  +.....+....               .++.+.+|++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence            56677889999999999998876    7999998865  432  22332211111               5789999999


Q ss_pred             CCcceeeee------ec--------cCCCeeEEEEcCCCcEEEEe-cCCCeEEEEeCCCCce------eE------Eeec
Q 043942           70 DRGAYLNMF------SG--------HGSGLTCGDFTTDGKTICTG-SDNATLSIWNPKGGEN------FH------AIRR  122 (216)
Q Consensus        70 ~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~l~t~-~~d~~i~~wd~~~~~~------~~------~~~~  122 (216)
                      .+...+..+      .+        +...+.+++|+|++++++++ ..++.|.+|++.....      +.      ....
T Consensus       128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (361)
T 3scy_A          128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV  207 (361)
T ss_dssp             CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred             CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence            754322211      11        12235789999999966554 4689999999875431      11      1111


Q ss_pred             ccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-ccCeE-------------------EeeeCCEEEEEEecCCCeE
Q 043942          123 SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-VDGKV-------------------DGHIDAIQSLSVSAIRESL  182 (216)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~i-------------------~~~~~~i~~~~~~~~~~~l  182 (216)
                                    .....+..++|+|+|+++++++ .++.+                   ..+......++|+|+|++|
T Consensus       208 --------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l  273 (361)
T 3scy_A          208 --------------APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYL  273 (361)
T ss_dssp             --------------CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEE
T ss_pred             --------------CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEE
Confidence                          0345578899999999887766 46666                   0111335699999999998


Q ss_pred             EEEeC--CCcEEEEEcc
Q 043942          183 VSVSV--DGTARVFEIA  197 (216)
Q Consensus       183 ~s~~~--d~~v~vw~~~  197 (216)
                      +++..  ++.|.+|++.
T Consensus       274 ~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          274 YASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEECSSSCEEEEEEEC
T ss_pred             EEECCCCCCEEEEEEEc
Confidence            76655  4899999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=4.5e-16  Score=116.20  Aligned_cols=175  Identities=17%  Similarity=0.142  Sum_probs=114.7

Q ss_pred             eccccceEEEEEccCCCEEEEEcC---CCcEEEEECCCCc--eEEEEeCCCCcc-----------------cCcEEEEEE
Q 043942           11 LGHKDSFSSLAFSTDGQLLASGGF---HGLVQNRDTSSRN--LQCTVEGPRGGI-----------------EDSTVWMWN   68 (216)
Q Consensus        11 ~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~vwd~~~~~--~~~~~~~~~~~~-----------------~~~~v~i~d   68 (216)
                      ..+...+..++|+|+|+ |++++.   ++.|++|++.+++  .+..+..+....                 .++.+.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34556778899999999 555543   6899999997765  333322111111                 568999999


Q ss_pred             CCC-c--ceeeeeec---------cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC-CCceeEEeecccccccccceEEE
Q 043942           69 ADR-G--AYLNMFSG---------HGSGLTCGDFTTDGKTICTGSDNATLSIWNPK-GGENFHAIRRSSLEFSLNYWMIC  135 (216)
Q Consensus        69 ~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~  135 (216)
                      +.. +  ..+..+..         +...+.+++|+|+++.+++...++.|.+||+. +++........            
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~------------  182 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT------------  182 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE------------
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE------------
Confidence            962 2  23333321         11247889999999977777788999999998 45432211100            


Q ss_pred             eeeecCeEEEEeCCCCcEEEEe-cccCeE-----E-------------eee------CCEEEEEEecCCCeEE-EEeCCC
Q 043942          136 TSLYDGVTCLSWPGTSKYLVTG-CVDGKV-----D-------------GHI------DAIQSLSVSAIRESLV-SVSVDG  189 (216)
Q Consensus       136 ~~~~~~v~~~~~~~~~~~l~~~-~~~~~i-----~-------------~~~------~~i~~~~~~~~~~~l~-s~~~d~  189 (216)
                      ......+..++|+|+|++++++ ..++.+     .             ...      ..+..++|+|+|++|+ +...++
T Consensus       183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~  262 (347)
T 3hfq_A          183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN  262 (347)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred             cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence            0022356789999999976664 445554     0             000      2377899999999874 556689


Q ss_pred             cEEEEEccc
Q 043942          190 TARVFEIAE  198 (216)
Q Consensus       190 ~v~vw~~~~  198 (216)
                      .|.+|++..
T Consensus       263 ~v~v~~~~~  271 (347)
T 3hfq_A          263 TLAVFAVTA  271 (347)
T ss_dssp             EEEEEEECG
T ss_pred             EEEEEEECC
Confidence            999999973

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.74  E-value=1.1e-16  Score=135.36  Aligned_cols=168  Identities=15%  Similarity=0.095  Sum_probs=132.7

Q ss_pred             cccceEEEEEc-cCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-cc---------------cCcEEE-EEECCCcce
Q 043942           13 HKDSFSSLAFS-TDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-GI---------------EDSTVW-MWNADRGAY   74 (216)
Q Consensus        13 h~~~v~~~~~s-~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~---------------~~~~v~-i~d~~~~~~   74 (216)
                      |...+.+++|+ |||++|++++ ++.+.+|+..+++... +..+.. .+               .+..+. +||+.+++.
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~  371 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA  371 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCc
Confidence            45578999999 9999999888 8899999998776433 222222 00               245677 889887765


Q ss_pred             eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      .. +.+|...+..++|+|||++|++++.++.|++||+.+++.......               +...+..++|+|||++|
T Consensus       372 ~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---------------~~~~v~~~~~SpDG~~l  435 (1045)
T 1k32_A          372 EK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---------------REAMITDFTISDNSRFI  435 (1045)
T ss_dssp             EE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---------------SSSCCCCEEECTTSCEE
T ss_pred             eE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC---------------CCCCccceEECCCCCeE
Confidence            43 447878899999999999999999999999999999887776654               77788999999999999


Q ss_pred             EEecccC----------eE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          155 VTGCVDG----------KV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       155 ~~~~~~~----------~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ++++.++          .+             ..|...+..++|+|+|++|++++.++...+|+...
T Consensus       436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             EEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             EEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            8877643          34             34556688899999999999999888888887653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=2.2e-16  Score=117.56  Aligned_cols=123  Identities=11%  Similarity=0.094  Sum_probs=93.0

Q ss_pred             EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC--Ccc----------------cCcEEEEEECCCcceeeeeec
Q 043942           19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR--GGI----------------EDSTVWMWNADRGAYLNMFSG   80 (216)
Q Consensus        19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~~----------------~~~~v~i~d~~~~~~~~~~~~   80 (216)
                      .++++++++++++++.++.|++||..+++....+..+.  ...                .++.|.+||+.+++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678888999999999999999999999888887554  211                578899999999888776653


Q ss_pred             cC------CCeeEEEEcCCCcEEEEecCC------------CeEEEEeCCCCcee---EEeecccccccccceEEEeeee
Q 043942           81 HG------SGLTCGDFTTDGKTICTGSDN------------ATLSIWNPKGGENF---HAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        81 ~~------~~v~~~~~~~~~~~l~t~~~d------------~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      ..      ..+..++|+|+++++++++.+            +.|.+||+.+++..   ..+.                +.
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----------------~~  147 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP----------------MP  147 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE----------------CC
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc----------------CC
Confidence            22      237899999999999998865            89999999875432   2332                23


Q ss_pred             cCeEEEEeCCCCcEEEEec
Q 043942          140 DGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~  158 (216)
                      ..+.+++|+|+|+ +++++
T Consensus       148 ~~~~~~~~s~dg~-l~~~~  165 (349)
T 1jmx_B          148 RQVYLMRAADDGS-LYVAG  165 (349)
T ss_dssp             SSCCCEEECTTSC-EEEES
T ss_pred             CcccceeECCCCc-EEEcc
Confidence            3567777888887 44443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.74  E-value=4.4e-17  Score=118.33  Aligned_cols=170  Identities=16%  Similarity=0.102  Sum_probs=118.8

Q ss_pred             CceeEEeecc-ccceEEEEEccCCCEEEEEc--CCCcEEEE--ECCCCceEEEEeCCC----------Cc-c-----cCc
Q 043942            4 GDWASEILGH-KDSFSSLAFSTDGQLLASGG--FHGLVQNR--DTSSRNLQCTVEGPR----------GG-I-----EDS   62 (216)
Q Consensus         4 g~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~--~d~~v~vw--d~~~~~~~~~~~~~~----------~~-~-----~~~   62 (216)
                      ++.......| ...+.+++|+|++++|++++  .++..++|  +..+++. ..+..+.          .. +     .++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~  151 (297)
T 2ojh_A           73 PSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQ  151 (297)
T ss_dssp             CSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETT
T ss_pred             CCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCC
Confidence            5555555555 36789999999999999998  33455555  5454432 2221111          11 1     577


Q ss_pred             EEEEEECCC-cceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCC-CCceeEEeecccccccccceEEEeeee
Q 043942           63 TVWMWNADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPK-GGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        63 ~v~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      .+.+|+++. +.....+..+...+.+++|+|+++.++.++ .++.+.+|++. .+.....+..               +.
T Consensus       152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------~~  216 (297)
T 2ojh_A          152 VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD---------------SA  216 (297)
T ss_dssp             EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC---------------CS
T ss_pred             ceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec---------------CC
Confidence            788888542 233455666788899999999999887665 58899999886 4555555554               56


Q ss_pred             cCeEEEEeCCCCcEEEEecccC-----------eE----------------EeeeCCEEEEEEecCCCeEEEEeCCC
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDG-----------KV----------------DGHIDAIQSLSVSAIRESLVSVSVDG  189 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~-----------~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~  189 (216)
                      ..+..+.|+|++++|++++.++           .+                ..|...+..++|+|++++|++++.+.
T Consensus       217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            6788999999999998887652           23                25566788899999999998887653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.74  E-value=1.5e-15  Score=128.42  Aligned_cols=191  Identities=9%  Similarity=-0.038  Sum_probs=138.0

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cC----------
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------ED----------   61 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~----------   61 (216)
                      ..+.+|...+..++|+|||++|++++.++.|++||+.+++.......+...+                .+          
T Consensus       372 ~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~  451 (1045)
T 1k32_A          372 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  451 (1045)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence            4455788899999999999999999999999999999998877775554432                22          


Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee-------EEeecc--c--------
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF-------HAIRRS--S--------  124 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~-------~~~~~~--~--------  124 (216)
                      +.|++||+.+++ ...+..|...+..++|+|+|+.|++++.++....|+.......       ..+...  .        
T Consensus       452 ~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (1045)
T 1k32_A          452 QAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP  530 (1045)
T ss_dssp             EEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC
T ss_pred             CeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCc
Confidence            489999999877 6667778888999999999999999999888888886643321       111100  0        


Q ss_pred             ---------cccc--ccceEEEeeeecCeEEEEeCCCCcEEEEe-----------cc--cCeE----------EeeeCCE
Q 043942          125 ---------LEFS--LNYWMICTSLYDGVTCLSWPGTSKYLVTG-----------CV--DGKV----------DGHIDAI  170 (216)
Q Consensus       125 ---------~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----------~~--~~~i----------~~~~~~i  170 (216)
                               ....  .........+...+..+.++|++.++++.           +.  ...+          ......+
T Consensus       531 ~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v  610 (1045)
T 1k32_A          531 RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNL  610 (1045)
T ss_dssp             GGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEE
T ss_pred             CccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCc
Confidence                     0000  00111222355778999999999877751           11  2223          1122567


Q ss_pred             EEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          171 QSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       171 ~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ..++|||||++|++++.+ .+++||+.+++
T Consensus       611 ~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          611 TDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             EEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             ceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence            899999999999998866 89999998876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.73  E-value=3.6e-16  Score=127.09  Aligned_cols=169  Identities=12%  Similarity=0.056  Sum_probs=120.4

Q ss_pred             eEEEEEccCCCEEEEEc---------------------------------CCCcEEEEECCCCceEEEEeC--CCCcc--
Q 043942           17 FSSLAFSTDGQLLASGG---------------------------------FHGLVQNRDTSSRNLQCTVEG--PRGGI--   59 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~---------------------------------~d~~v~vwd~~~~~~~~~~~~--~~~~~--   59 (216)
                      +.+++|+|||++|++++                                 .+..|++||+.+++.......  +...+  
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            48999999999999987                                 446799999988765433221  11111  


Q ss_pred             --------------cC-----cEEEEEECCCcceeeeee-c-cCC---CeeEEEEcC--CCcEEEEecCCCeEEEEeCC-
Q 043942           60 --------------ED-----STVWMWNADRGAYLNMFS-G-HGS---GLTCGDFTT--DGKTICTGSDNATLSIWNPK-  112 (216)
Q Consensus        60 --------------~~-----~~v~i~d~~~~~~~~~~~-~-~~~---~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~-  112 (216)
                                    .+     ..|++||+.+++....+. . +..   .+..++|+|  +|+++++++.|+.+++|++. 
T Consensus       263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~  342 (706)
T 2z3z_A          263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT  342 (706)
T ss_dssp             EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET
T ss_pred             EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC
Confidence                          22     489999999884333332 1 222   246789999  99999999999999999876 


Q ss_pred             CCceeEEeecccccccccceEEEeeeecCeEE-EEeCCCCcEEEEecc-cC----eE------------EeeeCCEEEEE
Q 043942          113 GGENFHAIRRSSLEFSLNYWMICTSLYDGVTC-LSWPGTSKYLVTGCV-DG----KV------------DGHIDAIQSLS  174 (216)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-~~----~i------------~~~~~~i~~~~  174 (216)
                      ++.....+..               +...+.. ++|+|+++.|+.++. ++    .+            ..+...+..++
T Consensus       343 ~~~~~~~l~~---------------~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  407 (706)
T 2z3z_A          343 TGRLIRQVTK---------------GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQ  407 (706)
T ss_dssp             TSCEEEECCC---------------SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEE
T ss_pred             CCCEEEecCC---------------CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEE
Confidence            5666666654               5566766 799999987765544 33    33            23456789999


Q ss_pred             EecCCCeEEEEeCC----CcEEEEEccccc
Q 043942          175 VSAIRESLVSVSVD----GTARVFEIAEFR  200 (216)
Q Consensus       175 ~~~~~~~l~s~~~d----~~v~vw~~~~~~  200 (216)
                      |+|+|++++....+    +.+++||+.+++
T Consensus       408 ~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          408 LSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            99999988765433    569999998765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.72  E-value=1.6e-15  Score=112.25  Aligned_cols=95  Identities=11%  Similarity=0.087  Sum_probs=76.5

Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEEeCCC---Ccc----------------cCcEEEEEECCCcceeeeeecc-----C
Q 043942           27 QLLASGGFHGLVQNRDTSSRNLQCTVEGPR---GGI----------------EDSTVWMWNADRGAYLNMFSGH-----G   82 (216)
Q Consensus        27 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---~~~----------------~~~~v~i~d~~~~~~~~~~~~~-----~   82 (216)
                      ++|++++.++.|++||..+++....+....   ...                .++.|.+||+.+++.+..+...     .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            478999999999999999999888886443   111                5789999999998887766532     1


Q ss_pred             CCeeEEEEcCCCcEEEEec------------CCCeEEEEeCCCCceeEEee
Q 043942           83 SGLTCGDFTTDGKTICTGS------------DNATLSIWNPKGGENFHAIR  121 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~------------~d~~i~~wd~~~~~~~~~~~  121 (216)
                      ..+..++|+|+++++++++            .++.|.+||+.+++....+.
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  132 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence            2678999999999998886            57999999999888776665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=1.8e-15  Score=114.39  Aligned_cols=184  Identities=13%  Similarity=0.053  Sum_probs=131.6

Q ss_pred             CCCceeEEeeccccceEE-----EEEccCCCEEEEEcC-CC--cEEEEECCCCceEEEEeCCCCcc--------------
Q 043942            2 NQGDWASEILGHKDSFSS-----LAFSTDGQLLASGGF-HG--LVQNRDTSSRNLQCTVEGPRGGI--------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~-----~~~s~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~--------------   59 (216)
                      .+|..+..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++.......+....              
T Consensus        18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~   97 (388)
T 3pe7_A           18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY   97 (388)
T ss_dssp             TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred             CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence            457778888888766666     889999999998887 66  38888999887766554443211              


Q ss_pred             --cCcEEEEEECCCcceeeeeeccCCCeeEEE--EcCCCcEEEEe----------------------cCCCeEEEEeCCC
Q 043942           60 --EDSTVWMWNADRGAYLNMFSGHGSGLTCGD--FTTDGKTICTG----------------------SDNATLSIWNPKG  113 (216)
Q Consensus        60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~t~----------------------~~d~~i~~wd~~~  113 (216)
                        .++.+++||+.+++....+..+...+....  ++|+++.++..                      ..+..|.+||+.+
T Consensus        98 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  177 (388)
T 3pe7_A           98 VKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT  177 (388)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred             EeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence              567899999999887766666666554444  48999988742                      2457899999998


Q ss_pred             CceeEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecccC------eE-------------Eeee--CCEE
Q 043942          114 GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDG------KV-------------DGHI--DAIQ  171 (216)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~------~i-------------~~~~--~~i~  171 (216)
                      ++......                +...+..+.|+| +|+.|+.....+      .+             ..+.  ..+.
T Consensus       178 g~~~~l~~----------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  241 (388)
T 3pe7_A          178 GESTVILQ----------------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCT  241 (388)
T ss_dssp             CCEEEEEE----------------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEE
T ss_pred             CceEEeec----------------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccc
Confidence            86544433                556788999999 999887665432      33             1222  2477


Q ss_pred             EEEEecCCCeEEEEeC-CC----cEEEEEcccccc
Q 043942          172 SLSVSAIRESLVSVSV-DG----TARVFEIAEFRR  201 (216)
Q Consensus       172 ~~~~~~~~~~l~s~~~-d~----~v~vw~~~~~~~  201 (216)
                      ...|+|||+.|+..+. ++    .|++||+.+++.
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             cceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence            8899999998865443 22    399999988763

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=1.1e-14  Score=109.64  Aligned_cols=173  Identities=8%  Similarity=0.024  Sum_probs=118.2

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECC-CCceEEEEeC--CCC----------c---c-----------------c
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTS-SRNLQCTVEG--PRG----------G---I-----------------E   60 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~--~~~----------~---~-----------------~   60 (216)
                      ...+..++|+|+|++|++++.+ .|.+|++. +++.......  ...          .   +                 .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3467899999999999999888 99999997 7765443221  111          0   0                 2


Q ss_pred             CcEEEEEECC-Ccceeeeee----ccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCC-CCceeE--Eeecccccccccc
Q 043942           61 DSTVWMWNAD-RGAYLNMFS----GHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPK-GGENFH--AIRRSSLEFSLNY  131 (216)
Q Consensus        61 ~~~v~i~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~-~~~~~~--~~~~~~~~~~~~~  131 (216)
                      ++.+.+|++. .++....+.    .+...+.+++|+|+|+++++++ .++.|++||+. +++...  .+...        
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~--------  189 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP--------  189 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS--------
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC--------
Confidence            4567888886 455443333    2456789999999999888765 46899999998 676432  22110        


Q ss_pred             eEEEeeeecCeEEEEeCCCCcEEEEecc-cCeEE--------e------------------eeC------CEEEEE-Eec
Q 043942          132 WMICTSLYDGVTCLSWPGTSKYLVTGCV-DGKVD--------G------------------HID------AIQSLS-VSA  177 (216)
Q Consensus       132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i~--------~------------------~~~------~i~~~~-~~~  177 (216)
                           .+...+..++|+|+|+++++++. ++.+.        +                  |..      .+..++ |+|
T Consensus       190 -----~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp  264 (365)
T 1jof_A          190 -----DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF  264 (365)
T ss_dssp             -----STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred             -----CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence                 02356889999999998877654 44440        0                  000      377899 999


Q ss_pred             CCCeEEEEeCC-C-----cEEEEEcc-ccc
Q 043942          178 IRESLVSVSVD-G-----TARVFEIA-EFR  200 (216)
Q Consensus       178 ~~~~l~s~~~d-~-----~v~vw~~~-~~~  200 (216)
                      ||++|+++..+ +     .|.+|++. +++
T Consensus       265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~  294 (365)
T 1jof_A          265 SGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             TSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             CCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence            99988776543 3     89999996 444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.68  E-value=6.2e-14  Score=105.17  Aligned_cols=178  Identities=14%  Similarity=0.078  Sum_probs=115.3

Q ss_pred             eeccccceEEEEEccCCCEEEEEc-CCCcEEEEECCCCceEE----E--------------------Ee-CCCCc-c---
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQC----T--------------------VE-GPRGG-I---   59 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~----~--------------------~~-~~~~~-~---   59 (216)
                      ...+......+++  ++++|++++ .++.|.+|++.....+.    .                    +. .+... +   
T Consensus        95 ~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~  172 (361)
T 3scy_A           95 QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD  172 (361)
T ss_dssp             EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred             eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence            3334456667777  788777666 57899999987532211    0                    11 11111 1   


Q ss_pred             --cCcEEEEEECCCcce------e-------eeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeE--Eee
Q 043942           60 --EDSTVWMWNADRGAY------L-------NMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFH--AIR  121 (216)
Q Consensus        60 --~~~~v~i~d~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~--~~~  121 (216)
                        .++.|.+|++.....      +       .....+...+..++|+|+++++++++ .++.|.+||+.+++...  .+.
T Consensus       173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~  252 (361)
T 3scy_A          173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA  252 (361)
T ss_dssp             ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred             eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence              578899998874331      1       11222445678999999999887766 68999999998775422  222


Q ss_pred             cccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc--CeE-----------------EeeeCCEEEEEEecCCCeE
Q 043942          122 RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD--GKV-----------------DGHIDAIQSLSVSAIRESL  182 (216)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~i-----------------~~~~~~i~~~~~~~~~~~l  182 (216)
                      ...            .+......++|+|+|++|+++..+  +.+                 ......+..++|+|+|++|
T Consensus       253 ~~~------------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l  320 (361)
T 3scy_A          253 ADT------------VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYL  320 (361)
T ss_dssp             SCS------------SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEE
T ss_pred             cCC------------CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEE
Confidence            100            023456899999999988776654  544                 0112357789999999988


Q ss_pred             EEEe-CCCcEEEEEcc--cccc
Q 043942          183 VSVS-VDGTARVFEIA--EFRR  201 (216)
Q Consensus       183 ~s~~-~d~~v~vw~~~--~~~~  201 (216)
                      ++++ .++.|.+|++.  +++.
T Consensus       321 ~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          321 LVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             EEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEECCCCCEEEEEEECCCCcE
Confidence            8877 57899997654  4443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.68  E-value=1.7e-16  Score=129.34  Aligned_cols=190  Identities=12%  Similarity=0.053  Sum_probs=122.5

Q ss_pred             CCCceeEEeecccc---ceEEEEEccCCCEEEEEcC---------CCcEEEEECCCCceE--EEEeCC--------CC-c
Q 043942            2 NQGDWASEILGHKD---SFSSLAFSTDGQLLASGGF---------HGLVQNRDTSSRNLQ--CTVEGP--------RG-G   58 (216)
Q Consensus         2 ~~g~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~---------d~~v~vwd~~~~~~~--~~~~~~--------~~-~   58 (216)
                      .+|+....+.+|..   .+.+++|||||++|++++.         ++.|++||+.+++..  ..+...        .+ .
T Consensus        44 ~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~  123 (719)
T 1z68_A           44 ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSK  123 (719)
T ss_dssp             SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTC
T ss_pred             CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCE
Confidence            45666666655544   3899999999999998876         789999999988762  111111        11 0


Q ss_pred             c---cCcEEEEEECCCcceeeee-eccCCCe-----------------eEEEEcCCCcEEEEecCCC-------------
Q 043942           59 I---EDSTVWMWNADRGAYLNMF-SGHGSGL-----------------TCGDFTTDGKTICTGSDNA-------------  104 (216)
Q Consensus        59 ~---~~~~v~i~d~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~t~~~d~-------------  104 (216)
                      +   .++.|++||+.+++..... .++...+                 .+++|+|||+.|++++.|.             
T Consensus       124 la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~  203 (719)
T 1z68_A          124 LAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD  203 (719)
T ss_dssp             EEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCS
T ss_pred             EEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCC
Confidence            1   6789999999887765432 2222212                 5899999999999987552             


Q ss_pred             ---------------------eEEEEeCCCCcee--EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942          105 ---------------------TLSIWNPKGGENF--HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG  161 (216)
Q Consensus       105 ---------------------~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  161 (216)
                                           .|++||+.+++..  ..+.... .        ..++...+..++|+||++++++....+
T Consensus       204 ~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~SpD~~~~~~~~~~~  274 (719)
T 1z68_A          204 EQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA-M--------IASSDYYFSWLTWVTDERVCLQWLKRV  274 (719)
T ss_dssp             SSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH-H--------HHTSCEEEEEEEESSSSEEEEEEEESS
T ss_pred             CCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc-c--------CCCCcceEEEeEEeCCCeEEEEEeccc
Confidence                                 7889998877642  1111100 0        001566789999999988776633211


Q ss_pred             ----eE---E-------------------eeeCCEE-----EEEEecCCCeEEE--EeCCC--cEEEEEccccc
Q 043942          162 ----KV---D-------------------GHIDAIQ-----SLSVSAIRESLVS--VSVDG--TARVFEIAEFR  200 (216)
Q Consensus       162 ----~i---~-------------------~~~~~i~-----~~~~~~~~~~l~s--~~~d~--~v~vw~~~~~~  200 (216)
                          .+   .                   .|...+.     .+.|+|||+.|+.  ...++  .|.+|++.+++
T Consensus       275 ~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          275 QNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             TTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             cCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence                12   1                   2233454     7899999996654  44555  56667766554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.67  E-value=3.7e-15  Score=121.90  Aligned_cols=176  Identities=7%  Similarity=0.044  Sum_probs=122.7

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc--------c-------------c---------CcEE
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG--------I-------------E---------DSTV   64 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--------~-------------~---------~~~v   64 (216)
                      ....+++|+|||++++++  |+.|++||+.+++....+..+...        .             .         .+.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999999886  899999999999887776655421        0             1         1677


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee-----
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY-----  139 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  139 (216)
                      .+||+.+++.. .+..+.+.+...+|+|||+.|+.+ .++.|++||+.+++..+........      ....++.     
T Consensus        95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~------~~~~g~~~~v~~  166 (740)
T 4a5s_A           95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED------IIYNGITDWVYE  166 (740)
T ss_dssp             EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT------TEEESBCCHHHH
T ss_pred             EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCcc------ceecCccccccc
Confidence            89999988764 466677889999999999999988 4689999999987754422211000      0000011     


Q ss_pred             ----cCeEEEEeCCCCcEEEEecccCe------------------------------------E------E---e-----
Q 043942          140 ----DGVTCLSWPGTSKYLVTGCVDGK------------------------------------V------D---G-----  165 (216)
Q Consensus       140 ----~~v~~~~~~~~~~~l~~~~~~~~------------------------------------i------~---~-----  165 (216)
                          .....+.|+|||+.|+..+.|..                                    +      .   +     
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~  246 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS  246 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence                22245889999998887643211                                    1      1   1     


Q ss_pred             -----------eeCCEEEEEEecCCCeEEEEeC----CCcEEEEEccccc
Q 043942          166 -----------HIDAIQSLSVSAIRESLVSVSV----DGTARVFEIAEFR  200 (216)
Q Consensus       166 -----------~~~~i~~~~~~~~~~~l~s~~~----d~~v~vw~~~~~~  200 (216)
                                 |...+..++|+|||+.++....    +..|++||+.+++
T Consensus       247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                       3445788999999997665432    3479999998876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=1.1e-13  Score=102.72  Aligned_cols=186  Identities=12%  Similarity=-0.001  Sum_probs=137.8

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC------Ccc---------------c
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR------GGI---------------E   60 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~------~~~---------------~   60 (216)
                      ++++.+.++.. ......++++++++.+++...++.|.+||..+++....+....      .+.               .
T Consensus        72 ~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~  150 (328)
T 3dsm_A           72 NTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSY  150 (328)
T ss_dssp             TTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTT
T ss_pred             cccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCC
Confidence            46777787853 4567899999998655555589999999999999888777544      211               2


Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC----------CeEEEEeCCCCceeEEeeccccccccc
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN----------ATLSIWNPKGGENFHAIRRSSLEFSLN  130 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d----------~~i~~wd~~~~~~~~~~~~~~~~~~~~  130 (216)
                      ++.|.++|+.+++.+..+.. ......++++|+|++++++..+          +.|.++|..+++....+...       
T Consensus       151 ~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-------  222 (328)
T 3dsm_A          151 QNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-------  222 (328)
T ss_dssp             CCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-------
T ss_pred             CCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-------
Confidence            78899999999988777764 3446789999999988777655          78999999988877666431       


Q ss_pred             ceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEec-CCCeEEEE----eCCC
Q 043942          131 YWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSA-IRESLVSV----SVDG  189 (216)
Q Consensus       131 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~-~~~~l~s~----~~d~  189 (216)
                             .......++++|+++.++++..  .+                .........++++| +++++++.    ..++
T Consensus       223 -------~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~  293 (328)
T 3dsm_A          223 -------LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG  293 (328)
T ss_dssp             -------TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred             -------CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence                   1236789999999988887654  33                11135688999999 55555665    5689


Q ss_pred             cEEEEEcccccceeecC
Q 043942          190 TARVFEIAEFRRATKAP  206 (216)
Q Consensus       190 ~v~vw~~~~~~~~~~~~  206 (216)
                      .|.+||.. ++.+..++
T Consensus       294 ~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          294 IVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEEEECTT-CCEEEEEE
T ss_pred             EEEEECCC-CCEEEEEE
Confidence            99999987 76655443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.66  E-value=8.3e-15  Score=110.78  Aligned_cols=183  Identities=13%  Similarity=0.022  Sum_probs=122.4

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------------   59 (216)
                      ++++..+...+|...+..+.|+|||+.|+.++.++.+++||+.+++.......+....                      
T Consensus        68 ~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~  147 (388)
T 3pe7_A           68 NTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRRE  147 (388)
T ss_dssp             TTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGG
T ss_pred             CCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCc
Confidence            4555555555666666678999999999999999999999999987665444332200                      


Q ss_pred             ------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCC------CeEEEEeCCCC
Q 043942           60 ------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDN------ATLSIWNPKGG  114 (216)
Q Consensus        60 ------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d------~~i~~wd~~~~  114 (216)
                                        .+..|++||+.+++... +..+...+..++|+| +++.|+....+      ..|.++|...+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (388)
T 3pe7_A          148 DWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT  226 (388)
T ss_dssp             GCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred             ccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence                              23789999999886544 444667789999999 99988876653      37888888755


Q ss_pred             ceeEEeecccccccccceEEEeeee--cCeEEEEeCCCCcEEEEecc-cC----eE------------EeeeCC------
Q 043942          115 ENFHAIRRSSLEFSLNYWMICTSLY--DGVTCLSWPGTSKYLVTGCV-DG----KV------------DGHIDA------  169 (216)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-~~----~i------------~~~~~~------  169 (216)
                      .. ..+..               +.  ..+..+.|+|+|+.|+..+. ++    .+            ......      
T Consensus       227 ~~-~~l~~---------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~  290 (388)
T 3pe7_A          227 NM-RKVKT---------------HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS  290 (388)
T ss_dssp             CC-EESCC---------------CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE
T ss_pred             ce-EEeee---------------CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee
Confidence            43 33322               22  34678899999997755433 22    13            000001      


Q ss_pred             -EEEEEEecCCCeEEEE---------eCCCcEEEEEcccccc
Q 043942          170 -IQSLSVSAIRESLVSV---------SVDGTARVFEIAEFRR  201 (216)
Q Consensus       170 -i~~~~~~~~~~~l~s~---------~~d~~v~vw~~~~~~~  201 (216)
                       .....|+|||+.|+..         ..+..|++||+.+++.
T Consensus       291 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          291 NYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             CTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             cCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence             1123699999988753         4467899999987654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=3.5e-13  Score=97.88  Aligned_cols=171  Identities=9%  Similarity=0.092  Sum_probs=120.4

Q ss_pred             cccceEEEEE-ccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCC-c-----------c-----cCcEEEEEECCCcc
Q 043942           13 HKDSFSSLAF-STDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRG-G-----------I-----EDSTVWMWNADRGA   73 (216)
Q Consensus        13 h~~~v~~~~~-s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~-~-----------~-----~~~~v~i~d~~~~~   73 (216)
                      |...+.++++ .++++++++... ++.|++|| .+++.+..+..... .           +     .++.|.+||.. ++
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  152 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN  152 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence            4457889999 467777666643 88999999 56666665532211 0           1     46788888864 45


Q ss_pred             eeeeee--ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942           74 YLNMFS--GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS  151 (216)
Q Consensus        74 ~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  151 (216)
                      .+..+.  .+...+..++++|+++++++...++.|++||.. ++.+..+....             +...+..++++++|
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g-------------~~~~p~~i~~d~~G  218 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG-------------ITNYPIGVGINSNG  218 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT-------------TSCSEEEEEECTTC
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCC-------------ccCCCcEEEECCCC
Confidence            555543  344568999999999988888889999999975 55555554210             22567899999999


Q ss_pred             cEEEEecccC-eE-------------Eee--eCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          152 KYLVTGCVDG-KV-------------DGH--IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       152 ~~l~~~~~~~-~i-------------~~~--~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +++++...++ .+             ..+  ...+.+++++|+|+++++ +.|+.|++|++....
T Consensus       219 ~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          219 EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            8888877665 55             111  124779999999987777 579999999986543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.64  E-value=4.3e-15  Score=121.06  Aligned_cols=174  Identities=7%  Similarity=0.062  Sum_probs=118.1

Q ss_pred             EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC------cc-------------c---------CcEEEEEECC
Q 043942           19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG------GI-------------E---------DSTVWMWNAD   70 (216)
Q Consensus        19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~------~~-------------~---------~~~v~i~d~~   70 (216)
                      +++|+|+|++++++ .|+.|++||..+++....+..+..      ..             .         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            78999999655554 699999999999987766654321      11             2         5899999999


Q ss_pred             CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee---------cC
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY---------DG  141 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  141 (216)
                      +++.+.... ....+..++|+|||+.|+++. ++.|++||+.+++...........      .+..++.         ..
T Consensus        99 ~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~------~v~~g~~~~v~~ee~~~~  170 (719)
T 1z68_A           99 NGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN------KIFNGIPDWVYEEEMLAT  170 (719)
T ss_dssp             TTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT------TEEESSCCHHHHHHTTCS
T ss_pred             CCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC------CeEcccccceeeeecccC
Confidence            887631111 125688999999999999885 789999999988765432211000      0000111         12


Q ss_pred             eEEEEeCCCCcEEEEecccC----------------------------------eE--------E--------------e
Q 043942          142 VTCLSWPGTSKYLVTGCVDG----------------------------------KV--------D--------------G  165 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~----------------------------------~i--------~--------------~  165 (216)
                      ...++|+|||++|++++.|.                                  .+        .              .
T Consensus       171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred             cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence            25899999999999887552                                  22        1              2


Q ss_pred             eeCCEEEEEEecCCCeEEEEeCC----CcEEEEE----cccccc
Q 043942          166 HIDAIQSLSVSAIRESLVSVSVD----GTARVFE----IAEFRR  201 (216)
Q Consensus       166 ~~~~i~~~~~~~~~~~l~s~~~d----~~v~vw~----~~~~~~  201 (216)
                      |...+..++|+||++++++....    ..|.+||    +.+++.
T Consensus       251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~  294 (719)
T 1z68_A          251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC  294 (719)
T ss_dssp             SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred             CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence            44568999999998877764432    2488899    666544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.63  E-value=1e-14  Score=116.15  Aligned_cols=162  Identities=10%  Similarity=0.066  Sum_probs=117.9

Q ss_pred             eEEEEEccCCC--EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cC----cEEEEEECCCcceeee
Q 043942           17 FSSLAFSTDGQ--LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------ED----STVWMWNADRGAYLNM   77 (216)
Q Consensus        17 v~~~~~s~~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~----~~v~i~d~~~~~~~~~   77 (216)
                      +...+|+|+|+  .+++++ ++.+.+||+.+++.......+....             .+    ..|++||+.+++.. .
T Consensus       112 ~~~~~~s~dg~~~~~~s~~-~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~  189 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGAT-EDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-V  189 (582)
T ss_dssp             BEEEEEEECSSCEEEEEEC-SSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-E
T ss_pred             ceeeeeCCCCCeEEEEecC-CCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-E
Confidence            44678888885  344444 4455599999887655544333211             23    77999999988764 6


Q ss_pred             eeccCCCeeEEEEcCCCcEEEEecCCC--eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE--------e
Q 043942           78 FSGHGSGLTCGDFTTDGKTICTGSDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS--------W  147 (216)
Q Consensus        78 ~~~~~~~v~~~~~~~~~~~l~t~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~  147 (216)
                      +..|.+.+..++|+|||+.|+++..++  .|++||+.+++.. .+..               +...+..+.        |
T Consensus       190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~---------------~~~~~~~~~~~~~~~~~~  253 (582)
T 3o4h_A          190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL---------------PSKDFSSYRPTAITWLGY  253 (582)
T ss_dssp             ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC---------------SCSHHHHHCCSEEEEEEE
T ss_pred             eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC---------------CCcChhhhhhccccceeE
Confidence            677888899999999999999888888  8999999988776 4443               333344444        9


Q ss_pred             CCCCcEEEEecccCeEE---------eeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEcc
Q 043942          148 PGTSKYLVTGCVDGKVD---------GHIDAIQSLSVSAIRESLVSVSVDG---TARVFEIA  197 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i~---------~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~~  197 (216)
                      +|||.++++++.++.+.         .....+.+++|+ +++++++++.+.   .+++|+..
T Consensus       254 spdg~~~~~~~~~g~~~l~~~g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          254 LPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             CTTSCEEEEEEETTEEEEEETTEEECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             cCCCcEEEEEEcCCcEEEEEECCeeccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            99998888888888761         234567899999 999998887774   46666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.61  E-value=8.6e-13  Score=95.81  Aligned_cols=169  Identities=12%  Similarity=0.145  Sum_probs=124.3

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC------------------CCcc------cCcEEEEEE
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP------------------RGGI------EDSTVWMWN   68 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------------------~~~~------~~~~v~i~d   68 (216)
                      +-..+.+++++++++++++...++.|.+||.. ++....+...                  ...+      .++.|.+||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            44678999999999999988889999999987 5555554321                  0101      167888888


Q ss_pred             CCCcceeeeeec-cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           69 ADRGAYLNMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        69 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                       .+++.+..+.. +...+..++++|+++++++...++.|.+||.. ++....+....             +...+..+++
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-------------~~~~p~~i~~  171 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK-------------HLEFPNGVVV  171 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------------TCSSEEEEEE
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC-------------ccCCcEEEEE
Confidence             45666655532 34568999999999988888888999999965 55555553210             3346789999


Q ss_pred             CCCCcEEEEecccCeE------------E---eeeCCEEEEEEecCCCeEEEEeCCC-cEEEEEcc
Q 043942          148 PGTSKYLVTGCVDGKV------------D---GHIDAIQSLSVSAIRESLVSVSVDG-TARVFEIA  197 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i------------~---~~~~~i~~~~~~~~~~~l~s~~~d~-~v~vw~~~  197 (216)
                      +|+|+++++...++.+            .   ++...+..++++++|+++++...++ .|++|+..
T Consensus       172 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          172 NDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence            9999988777767666            1   1125688999999999888887776 99999954

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.60  E-value=4.5e-13  Score=100.83  Aligned_cols=155  Identities=8%  Similarity=0.045  Sum_probs=100.1

Q ss_pred             cccceEEEEEccCCCEEEEEcC-CCcEEEEECC-CCceEEEEeCCCCcccCcEEEEEECCCcceeeeee--ccCCCeeEE
Q 043942           13 HKDSFSSLAFSTDGQLLASGGF-HGLVQNRDTS-SRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFS--GHGSGLTCG   88 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~-~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~--~~~~~v~~~   88 (216)
                      +...+.+++|+|||++|++++. ++.|++||+. +++..                        .+..+.  .|...+..+
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~------------------------~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE------------------------LVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE------------------------EEEEEECSSTTCCEEEE
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE------------------------EeeeEecCCCCCCCCEe
Confidence            4567899999999998887653 4566666665 33321                        111222  234568899


Q ss_pred             EEcCCCcEEEEec-CCCeEEEEeCC--CCceeE---EeecccccccccceEEEeeeec------CeEEEE-eCCCCcEEE
Q 043942           89 DFTTDGKTICTGS-DNATLSIWNPK--GGENFH---AIRRSSLEFSLNYWMICTSLYD------GVTCLS-WPGTSKYLV  155 (216)
Q Consensus        89 ~~~~~~~~l~t~~-~d~~i~~wd~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~v~~~~-~~~~~~~l~  155 (216)
                      +|+|+|+++++++ .++.|.+|+++  +++...   .+.......        .++..      .+..++ |+|+|++|+
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~i~~~spdG~~l~  270 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI--------PDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC--------CCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc--------CCcccccccccccccEEEECCCCCEEE
Confidence            9999999888776 47899999875  455422   222100000        00121      478899 999999888


Q ss_pred             EecccC------eE-----------E-----e--eeCCEEEEEEec---CCCeEEEEeCC-CcEEEEEcccc
Q 043942          156 TGCVDG------KV-----------D-----G--HIDAIQSLSVSA---IRESLVSVSVD-GTARVFEIAEF  199 (216)
Q Consensus       156 ~~~~~~------~i-----------~-----~--~~~~i~~~~~~~---~~~~l~s~~~d-~~v~vw~~~~~  199 (216)
                      +++.+.      .+           .     .  +...+..++|+|   +|++|++++.+ +.|++|++...
T Consensus       271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            765432      44           1     0  112345677899   89999988764 89999998754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.60  E-value=2.2e-13  Score=103.07  Aligned_cols=166  Identities=11%  Similarity=-0.053  Sum_probs=114.3

Q ss_pred             EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----------------------------------------
Q 043942           19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----------------------------------------   58 (216)
Q Consensus        19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----------------------------------------   58 (216)
                      .+.|+|||++|+.++.++.|++||+.+++.......+...                                        
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            4789999999999999999999999988765544422210                                        


Q ss_pred             ccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCC------CeEEEEeCCCCceeEEeecccccccccc
Q 043942           59 IEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDN------ATLSIWNPKGGENFHAIRRSSLEFSLNY  131 (216)
Q Consensus        59 ~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~  131 (216)
                      ..+..|++||+.+++..... .+...+..+.|+| +++.|+..+.+      ..|.+||+..++.......         
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---------  234 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH---------  234 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC---------
T ss_pred             CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc---------
Confidence            13458999999987765444 4667789999999 78877765533      4688899875543222211         


Q ss_pred             eEEEeee-ecCeEEEEeCCCCcEEEEeccc-----CeE------------EeeeCCEEEEEEec-CCCeEEEEe------
Q 043942          132 WMICTSL-YDGVTCLSWPGTSKYLVTGCVD-----GKV------------DGHIDAIQSLSVSA-IRESLVSVS------  186 (216)
Q Consensus       132 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~-----~~i------------~~~~~~i~~~~~~~-~~~~l~s~~------  186 (216)
                            . ...+..+.|+|+|++|+..+.+     +.+            ........ +.|+| +|+++++++      
T Consensus       235 ------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~  307 (396)
T 3c5m_A          235 ------AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVD  307 (396)
T ss_dssp             ------CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC---
T ss_pred             ------CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCccee
Confidence                  1 2357788999999987766443     224            11111233 88999 999888754      


Q ss_pred             ----------CCCcEEEEEcccccc
Q 043942          187 ----------VDGTARVFEIAEFRR  201 (216)
Q Consensus       187 ----------~d~~v~vw~~~~~~~  201 (216)
                                .+..|++||+.+++.
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             -------CCCCCCEEEEEETTTTBC
T ss_pred             eccccccccCCCCcEEEEecccCce
Confidence                      347899999877653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.59  E-value=1e-13  Score=111.99  Aligned_cols=161  Identities=9%  Similarity=-0.022  Sum_probs=110.2

Q ss_pred             ceeEEeec-----cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCC------cc
Q 043942            5 DWASEILG-----HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADR------GA   73 (216)
Q Consensus         5 ~~~~~~~~-----h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~------~~   73 (216)
                      .....+..     |...+.+++|+|||+.|++++.+..      ..          ........|++||+.+      +.
T Consensus       115 ~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~------~~----------~~~~~~~~i~~~~~~~~~~~~~~~  178 (662)
T 3azo_A          115 AVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT------GE----------GPSDVRRFLAAVPLDGSAAADRSA  178 (662)
T ss_dssp             CCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC------SS----------STTCEEEEEEEEETTSTTTTCGGG
T ss_pred             CCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc------CC----------CCCCceeEEEEEECCCCccccCCc
Confidence            34455665     6778899999999999998885410      00          0000235677777776      44


Q ss_pred             eeeeee-ccCCCeeEEEEcCCCcEEEEecCC--------CeEEEEeCC-CCc--eeEEeecccccccccceEEEeeeecC
Q 043942           74 YLNMFS-GHGSGLTCGDFTTDGKTICTGSDN--------ATLSIWNPK-GGE--NFHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        74 ~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d--------~~i~~wd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      . ..+. .+...+..++|+|||++|+.++.+        ..|++||+. ++.  ....+..              .+...
T Consensus       179 ~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~--------------~~~~~  243 (662)
T 3azo_A          179 V-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG--------------GPEEA  243 (662)
T ss_dssp             S-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE--------------ETTBC
T ss_pred             e-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC--------------CCCce
Confidence            3 3444 455678889999999999987754        479999999 562  2222221              13577


Q ss_pred             eEEEEeCCCCcEEEEecccC--eE--------------EeeeCC--------EEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          142 VTCLSWPGTSKYLVTGCVDG--KV--------------DGHIDA--------IQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~--~i--------------~~~~~~--------i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      +..+.|+|||+++++++.++  .+              ..+...        +..++|+|+++++++++. +.+++|.+.
T Consensus       244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            89999999999888887777  34              011111        457889999999999988 999999443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.59  E-value=5.7e-13  Score=98.91  Aligned_cols=181  Identities=13%  Similarity=0.117  Sum_probs=122.8

Q ss_pred             CCceeEEee-ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeC--------------------C-CCcc
Q 043942            3 QGDWASEIL-GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEG--------------------P-RGGI   59 (216)
Q Consensus         3 ~g~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~--------------------~-~~~~   59 (216)
                      +|+.+..+. ++...+..++++|+|+++++...++.|++||..... .+..+..                    + ...+
T Consensus        78 ~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~l  157 (329)
T 3fvz_A           78 NAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAV  157 (329)
T ss_dssp             TCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCE
T ss_pred             CCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeE
Confidence            456555554 344578899999999999999889999999986542 3333321                    0 1111


Q ss_pred             ------cCcEEEEEECCCcceeeeeecc----------CCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           60 ------EDSTVWMWNADRGAYLNMFSGH----------GSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        60 ------~~~~v~i~d~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                            .++.|++|| .++..+..+...          -.....++++|+ ++++++...++.|++||..+++.+..+..
T Consensus       158 yv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~  236 (329)
T 3fvz_A          158 FVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH  236 (329)
T ss_dssp             EEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             EEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence                  256677777 345555555322          234789999998 77788888899999999998888877753


Q ss_pred             ccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-------ccCeE-----------------EeeeCCEEEEEEecC
Q 043942          123 SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-------VDGKV-----------------DGHIDAIQSLSVSAI  178 (216)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~~~i-----------------~~~~~~i~~~~~~~~  178 (216)
                      ..             +...+..++++| +..+.+.+       .+..+                 ..+...+..++++|+
T Consensus       237 ~~-------------~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d  302 (329)
T 3fvz_A          237 AS-------------FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED  302 (329)
T ss_dssp             TT-------------TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred             cc-------------cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence            21             334566777777 32222221       11121                 134566899999999


Q ss_pred             CCeEEEEeCCCcEEEEEccc
Q 043942          179 RESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       179 ~~~l~s~~~d~~v~vw~~~~  198 (216)
                      |+++++...++.|++|++..
T Consensus       303 G~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          303 GTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCc
Confidence            98888888899999999865

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.58  E-value=1.1e-11  Score=91.87  Aligned_cols=177  Identities=12%  Similarity=0.101  Sum_probs=121.9

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cC----cEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------ED----STV   64 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~----~~v   64 (216)
                      +....+..+...+.+++|+|+|++++++..++.|.+||..+++.......+...+                .+    +.|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i  114 (333)
T 2dg1_A           35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI  114 (333)
T ss_dssp             EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred             ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence            4455666777788999999999988888889999999998877654432222111                22    578


Q ss_pred             EEEECCCcceeeeee--ccCCCeeEEEEcCCCcEEEEecC------CCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942           65 WMWNADRGAYLNMFS--GHGSGLTCGDFTTDGKTICTGSD------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT  136 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (216)
                      .+||..++.....+.  .+...+..++++|+++++++...      .+.|..+|..+++......               
T Consensus       115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------  179 (333)
T 2dg1_A          115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---------------  179 (333)
T ss_dssp             EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---------------
T ss_pred             EEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec---------------
Confidence            899988766543332  23457899999999988887654      3567777766544332221               


Q ss_pred             eeecCeEEEEeCCCCcEEEEe-cccCeE---Ee-----------------ee--CCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942          137 SLYDGVTCLSWPGTSKYLVTG-CVDGKV---DG-----------------HI--DAIQSLSVSAIRESLVSVSVDGTARV  193 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~-~~~~~i---~~-----------------~~--~~i~~~~~~~~~~~l~s~~~d~~v~v  193 (216)
                       ....+..++|+|+++.++.+ ..++.+   ..                 ..  ..+..++++++|+++++...++.|.+
T Consensus       180 -~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~  258 (333)
T 2dg1_A          180 -NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV  258 (333)
T ss_dssp             -EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             -CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence             33457889999999865443 444544   00                 00  25677999999998888777899999


Q ss_pred             EEcc
Q 043942          194 FEIA  197 (216)
Q Consensus       194 w~~~  197 (216)
                      ||..
T Consensus       259 ~d~~  262 (333)
T 2dg1_A          259 FNKR  262 (333)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            9984

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.58  E-value=1.6e-14  Score=109.33  Aligned_cols=184  Identities=8%  Similarity=-0.086  Sum_probs=121.9

Q ss_pred             CCCceeEEeeccccc-----eEEEEEccCCCEEEEEcCC---CcEEEEECCCCceEEEEeCCCCc---c-----------
Q 043942            2 NQGDWASEILGHKDS-----FSSLAFSTDGQLLASGGFH---GLVQNRDTSSRNLQCTVEGPRGG---I-----------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~-----v~~~~~s~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~---~-----------   59 (216)
                      .+|+.+..+..+...     +..++|+|||++|+.....   ..+.+||+.+++.......+...   .           
T Consensus        18 ~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~   97 (396)
T 3c5m_A           18 DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFY   97 (396)
T ss_dssp             TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEE
T ss_pred             CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEE
Confidence            467777777765444     7788999999998876543   46888899887654433222110   1           


Q ss_pred             --cCcEEEEEECCCcceeeeeeccCCCeeE-------------------EEEcCCCcEEEEe-----cCCCeEEEEeCCC
Q 043942           60 --EDSTVWMWNADRGAYLNMFSGHGSGLTC-------------------GDFTTDGKTICTG-----SDNATLSIWNPKG  113 (216)
Q Consensus        60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~t~-----~~d~~i~~wd~~~  113 (216)
                        .++.|++||+.+++.......+......                   +.|+|+++.++.+     ..+..|++||+.+
T Consensus        98 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~  177 (396)
T 3c5m_A           98 VKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET  177 (396)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence              5567999999888765555544432222                   3467777766554     4567899999998


Q ss_pred             CceeEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecccC------eE-------------Eee--eCCEE
Q 043942          114 GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDG------KV-------------DGH--IDAIQ  171 (216)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~------~i-------------~~~--~~~i~  171 (216)
                      ++......                +...+..+.|+| +++.++..+.++      .+             ..+  ...+.
T Consensus       178 g~~~~~~~----------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  241 (396)
T 3c5m_A          178 GELEVIHQ----------------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT  241 (396)
T ss_dssp             CCEEEEEE----------------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred             CcEEeecc----------------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence            77654442                556788899999 787666554322      23             111  12477


Q ss_pred             EEEEecCCCeEEEEeCC-----CcEEEEEcccccc
Q 043942          172 SLSVSAIRESLVSVSVD-----GTARVFEIAEFRR  201 (216)
Q Consensus       172 ~~~~~~~~~~l~s~~~d-----~~v~vw~~~~~~~  201 (216)
                      .++|+|+|++|+..+.+     +.|++||+.+++.
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             ceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence            88999999988776544     4499999987654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=1.5e-12  Score=95.11  Aligned_cols=156  Identities=11%  Similarity=-0.028  Sum_probs=111.3

Q ss_pred             CCceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH   81 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~   81 (216)
                      .+..+..+..+.....+++|+|+|+ +++++..++.|..||..                          ++  ...+..+
T Consensus        16 ~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~--------------------------~~--~~~~~~~   67 (296)
T 3e5z_A           16 AGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD--------------------------GQ--LSPEMHP   67 (296)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT--------------------------SC--EEEEESS
T ss_pred             CCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC--------------------------CC--eEEEECC
Confidence            4555667777777889999999998 77777766666666654                          33  2334445


Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE----e
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT----G  157 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~  157 (216)
                      ...+.+++++|+++++++...++.|.+||..+++..........           .....+..++++|+|+++++    +
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-----------~~~~~~~~i~~d~~G~l~vtd~~~g  136 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG-----------KKLNSPNDVCLAPDGSLWFSDPTYG  136 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT-----------EECCCCCCEEECTTSCEEEEECSHH
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC-----------CCCCCCCCEEECCCCCEEEECCccc
Confidence            66789999999999888887889999999987875433221000           02235678899999998886    3


Q ss_pred             c-------------ccCeE------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          158 C-------------VDGKV------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       158 ~-------------~~~~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      +             ..+.+            ..+......++|+|+++.+++.+.++.|++|++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          137 IDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             HHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence            2             12233            2334567899999999988777778999999987

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.56  E-value=1.3e-12  Score=97.02  Aligned_cols=186  Identities=10%  Similarity=0.006  Sum_probs=124.0

Q ss_pred             ccceEEEEEccCCCEEEEEcCC------------------------CcEEEEECCCCceEEEEeCCC-Cc----------
Q 043942           14 KDSFSSLAFSTDGQLLASGGFH------------------------GLVQNRDTSSRNLQCTVEGPR-GG----------   58 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d------------------------~~v~vwd~~~~~~~~~~~~~~-~~----------   58 (216)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++....+.... ..          
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3579999999999999888877                        479999999888776554211 00          


Q ss_pred             -c-----cCcEEEEEECCCcc-eeeee---------eccCCCeeEEEEcC-CCcEEEEec-CCCeEEEEeCCCCceeEEe
Q 043942           59 -I-----EDSTVWMWNADRGA-YLNMF---------SGHGSGLTCGDFTT-DGKTICTGS-DNATLSIWNPKGGENFHAI  120 (216)
Q Consensus        59 -~-----~~~~v~i~d~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~t~~-~d~~i~~wd~~~~~~~~~~  120 (216)
                       +     .++.|++||..... .+..+         .++......++++| ++.++++.+ .++.|++|| .+++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence             1     56778888876432 34444         23344688999999 788888886 699999999 557766665


Q ss_pred             ecccccccccceEEEeeeecCeEEEEeCCC-CcEEEEecccCeE----------------EeeeCCEEEEEEec------
Q 043942          121 RRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKYLVTGCVDGKV----------------DGHIDAIQSLSVSA------  177 (216)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~------  177 (216)
                      .........     ..+.......++++|+ +.++++...++.|                ..+...+..++++|      
T Consensus       182 ~~~g~~~~~-----~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~  256 (329)
T 3fvz_A          182 GEESSGSSP-----RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV  256 (329)
T ss_dssp             CEECCSSSC-----CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred             ccCCCCCCC-----CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence            421100000     0003345789999998 7777777667666                11234678888998      


Q ss_pred             CCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          178 IRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       178 ~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      +|+..++...+..|++|++.+++....+
T Consensus       257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          257 NGKPYFGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             ECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred             CCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence            3333333344568999999887766553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.55  E-value=1.6e-13  Score=112.33  Aligned_cols=190  Identities=10%  Similarity=0.035  Sum_probs=116.7

Q ss_pred             CCCceeEEeeccccc-----eEEEEEccCCCEEEEEcCC---------CcEEEEECCCCceEEEEeCCCCcc--------
Q 043942            2 NQGDWASEILGHKDS-----FSSLAFSTDGQLLASGGFH---------GLVQNRDTSSRNLQCTVEGPRGGI--------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~-----v~~~~~s~~~~~l~s~~~d---------~~v~vwd~~~~~~~~~~~~~~~~~--------   59 (216)
                      ++|+....+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++... +..+....        
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPd  122 (740)
T 4a5s_A           44 EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPV  122 (740)
T ss_dssp             TTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSS
T ss_pred             CCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCC
Confidence            567777777777643     2347899999999998876         566799999886543 22221111        


Q ss_pred             -------cCcEEEEEECCCcceeee-eeccCCCe-----------------eEEEEcCCCcEEEEecCCC----------
Q 043942           60 -------EDSTVWMWNADRGAYLNM-FSGHGSGL-----------------TCGDFTTDGKTICTGSDNA----------  104 (216)
Q Consensus        60 -------~~~~v~i~d~~~~~~~~~-~~~~~~~v-----------------~~~~~~~~~~~l~t~~~d~----------  104 (216)
                             .++.|++||+.++...+. ..++...+                 ..+.|+|||+.|+.++.|.          
T Consensus       123 G~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~  202 (740)
T 4a5s_A          123 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF  202 (740)
T ss_dssp             TTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred             CCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEe
Confidence                   788999999988765432 22222222                 3589999999999875332          


Q ss_pred             --------------------------eEEEEeCCC---Cc--eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942          105 --------------------------TLSIWNPKG---GE--NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus       105 --------------------------~i~~wd~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                                                .|++||+.+   ++  ....+.....         ..++...+..++|+|||+.
T Consensus       203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~wspdg~~  273 (740)
T 4a5s_A          203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS---------MLIGDHYLCDVTWATQERI  273 (740)
T ss_dssp             CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH---------HHTSCEEEEEEEEEETTEE
T ss_pred             ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc---------CCCCCeEEEEEEEeCCCeE
Confidence                                      366666665   42  1112211000         0014556889999999996


Q ss_pred             EEEeccc----CeE----------------------EeeeCCE-----EEEEEecCCCeEE-EEeC-C--CcEEEEEccc
Q 043942          154 LVTGCVD----GKV----------------------DGHIDAI-----QSLSVSAIRESLV-SVSV-D--GTARVFEIAE  198 (216)
Q Consensus       154 l~~~~~~----~~i----------------------~~~~~~i-----~~~~~~~~~~~l~-s~~~-d--~~v~vw~~~~  198 (216)
                      ++.....    ..+                      ..+...+     ....|+|||+.|+ ..+. +  ..|++|++..
T Consensus       274 ~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          274 SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred             EEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence            5543221    122                      1122233     2688999999877 6654 4  4678888776


Q ss_pred             ccc
Q 043942          199 FRR  201 (216)
Q Consensus       199 ~~~  201 (216)
                      ++.
T Consensus       354 ~~~  356 (740)
T 4a5s_A          354 KDC  356 (740)
T ss_dssp             SSC
T ss_pred             Cce
Confidence            543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.55  E-value=7.6e-12  Score=94.05  Aligned_cols=197  Identities=12%  Similarity=0.150  Sum_probs=126.8

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCCC-------Cc--c---
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGPR-------GG--I---   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~-------~~--~---   59 (216)
                      ++++.+.++..+..+  .++|+|||+++++++          .++.|.+||..+++.+.++..+.       .+  +   
T Consensus        39 ~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s  116 (361)
T 2oiz_A           39 TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT  116 (361)
T ss_dssp             TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC
T ss_pred             CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC
Confidence            467788888877665  899999999999886          36779999999999988876431       11  1   


Q ss_pred             -----------c-CcEEEEEECCCcceeee-eeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCC-CceeEEee---
Q 043942           60 -----------E-DSTVWMWNADRGAYLNM-FSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKG-GENFHAIR---  121 (216)
Q Consensus        60 -----------~-~~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~-~~~~~~~~---  121 (216)
                                 . ++.|.+||+.+++.+.. +. ..+ ...+.+.|++ ..+++.+.||.+.+|++.. ++......   
T Consensus       117 pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~  194 (361)
T 2oiz_A          117 TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ  194 (361)
T ss_dssp             TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred             CCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence                       2 68899999999988776 54 222 2235566654 5666777788888887754 43331111   


Q ss_pred             ---cc--cc----cccccc---------eEEEee-----------------------eecCeEEEEeCCCCcEEEEecc-
Q 043942          122 ---RS--SL----EFSLNY---------WMICTS-----------------------LYDGVTCLSWPGTSKYLVTGCV-  159 (216)
Q Consensus       122 ---~~--~~----~~~~~~---------~~~~~~-----------------------~~~~v~~~~~~~~~~~l~~~~~-  159 (216)
                         ..  ..    ......         ......                       .......++++|+++.++++.. 
T Consensus       195 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~  274 (361)
T 2oiz_A          195 MFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP  274 (361)
T ss_dssp             CSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred             eEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence               00  00    000000         000000                       0011112688999887776543 


Q ss_pred             c----------CeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc--cceeec
Q 043942          160 D----------GKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF--RRATKA  205 (216)
Q Consensus       160 ~----------~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~--~~~~~~  205 (216)
                      +          +.+              ..+ . +.+++|+|+|++|++++. +.|.+||..++  +.+..+
T Consensus       275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             SCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             CCCcccccCCCceEEEEECCCCcEEEEEecC-C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence            1          233              222 3 899999999999998886 99999999999  777664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.52  E-value=3.5e-12  Score=91.66  Aligned_cols=172  Identities=12%  Similarity=0.010  Sum_probs=118.5

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC-----------CCcc-----cCcEEEEEECCCcceeeee
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP-----------RGGI-----EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-----------~~~~-----~~~~v~i~d~~~~~~~~~~   78 (216)
                      ..+.+++++++|+++++.. ++.|.+||.............           ...+     .++.|.+|+..+.......
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~  145 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP  145 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence            4678899999999777766 889999998765432111011           1111     3566777765544333222


Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                      ......+..++++++++++++...++.|.+||............               ....+..++++++|.++++..
T Consensus       146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------------~~~~p~~i~~d~~g~l~v~~~  210 (270)
T 1rwi_B          146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT---------------DITAPWGIAVDEAGTVYVTEH  210 (270)
T ss_dssp             CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS---------------SCCSEEEEEECTTCCEEEEET
T ss_pred             cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc---------------CCCCceEEEECCCCCEEEEEC
Confidence            22334678999999999888877788999999886554332211               225678899999997777766


Q ss_pred             ccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          159 VDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       159 ~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      .++.+              ..+...+.+++++++|+++++...++.|+++++...+..
T Consensus       211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence            66666              122256899999999998888888999999998876543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=4.9e-12  Score=91.58  Aligned_cols=169  Identities=12%  Similarity=0.041  Sum_probs=125.6

Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-cc--------------cCcEEEEEECCCcceeeeeeccC-CCeeEE
Q 043942           25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-GI--------------EDSTVWMWNADRGAYLNMFSGHG-SGLTCG   88 (216)
Q Consensus        25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~--------------~~~~v~i~d~~~~~~~~~~~~~~-~~v~~~   88 (216)
                      .+++|++++.++.|.+||.++++.+.++..+.. ..              .++.|..||. +++.+..+..+. ..+.++
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence            467899999999999999999999998877541 11              5667888888 788888887653 468899


Q ss_pred             EEcCCCcEEEEecC-CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----
Q 043942           89 DFTTDGKTICTGSD-NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----  163 (216)
Q Consensus        89 ~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----  163 (216)
                      .+.|+|+.+++.+. ++.+..+|. +++.+..+.......         .+......+...++|+++++...++.+    
T Consensus        83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~---------~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d  152 (276)
T 3no2_A           83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE---------RPHAQFRQINKNKKGNYLVPLFATSEVREIA  152 (276)
T ss_dssp             EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS---------SGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred             EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC---------cccccccCceECCCCCEEEEecCCCEEEEEC
Confidence            99999999999887 788888886 688777665321100         011233445667888888888777776    


Q ss_pred             --------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          164 --------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       164 --------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                              ......+.++...++|+++++++.++.|..+|..+++.+-+
T Consensus       153 ~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          153 PNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             TTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred             CCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence                    22224566778889999999988888999999887776443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.51  E-value=5.2e-12  Score=102.95  Aligned_cols=177  Identities=8%  Similarity=0.017  Sum_probs=111.5

Q ss_pred             cccceEEEEEccCCCEEEEEcCCC-----cEEEEECCCCceEEEEe-CCC-Ccc-------------cC-----------
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHG-----LVQNRDTSSRNLQCTVE-GPR-GGI-------------ED-----------   61 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~-~~~-~~~-------------~~-----------   61 (216)
                      |...+..++|||||++||.++.++     .|++||+.+++...... ... ..+             .+           
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            434688999999999999776543     89999999997765321 111 111             22           


Q ss_pred             -----cEEEEEECCCccee--eeee--ccCCCeeEEEEcCCCcEEEEecC-----CCeEEEEeCCC------Cc-eeEEe
Q 043942           62 -----STVWMWNADRGAYL--NMFS--GHGSGLTCGDFTTDGKTICTGSD-----NATLSIWNPKG------GE-NFHAI  120 (216)
Q Consensus        62 -----~~v~i~d~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~t~~~-----d~~i~~wd~~~------~~-~~~~~  120 (216)
                           ..|++|++.+++..  ..+.  .+...+..+.|+|||++|+.++.     +..|++||+.+      +. ....+
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l  282 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence                 24999999877522  2222  24556789999999999887764     67899999986      43 23444


Q ss_pred             ecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC----eE----------------EeeeC--CEEEEEEecC
Q 043942          121 RRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG----KV----------------DGHID--AIQSLSVSAI  178 (216)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~i----------------~~~~~--~i~~~~~~~~  178 (216)
                      ..               +...+.. .|+|+|..|+..+..+    .+                ..+..  .+..++|+++
T Consensus       283 ~~---------------~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  346 (710)
T 2xdw_A          283 ID---------------NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS  346 (710)
T ss_dssp             EC---------------SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT
T ss_pred             eC---------------CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC
Confidence            33               2223322 3556665544433221    12                22323  5778899888


Q ss_pred             CCeEEEEeCCCc--EEEEEcccccceeec
Q 043942          179 RESLVSVSVDGT--ARVFEIAEFRRATKA  205 (216)
Q Consensus       179 ~~~l~s~~~d~~--v~vw~~~~~~~~~~~  205 (216)
                      +.++++...|+.  |++|++.+++....+
T Consensus       347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l  375 (710)
T 2xdw_A          347 NFLVLCYLHDVKNTLQLHDLATGALLKIF  375 (710)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             CEEEEEEEECCEEEEEEEECCCCCEEEec
Confidence            888888888885  556676556544333

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.49  E-value=3.1e-11  Score=87.38  Aligned_cols=164  Identities=12%  Similarity=0.054  Sum_probs=117.7

Q ss_pred             CCCceeEEeeccc-cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc-c----------------c-Cc
Q 043942            2 NQGDWASEILGHK-DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG-I----------------E-DS   62 (216)
Q Consensus         2 ~~g~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~----------------~-~~   62 (216)
                      ++|+.+.++..+. ..+.++.++|+|++|+  +.++.|..||. +++.+.++..+... +                . ++
T Consensus        23 ~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~   99 (276)
T 3no2_A           23 DTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS   99 (276)
T ss_dssp             TTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred             CCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence            5889999998776 4789999999999888  34778999999 88888888765321 1                2 45


Q ss_pred             EEEEEECCCcceeeeeec------cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942           63 TVWMWNADRGAYLNMFSG------HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT  136 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (216)
                      .+..+|. +++.+..+..      +......+++.++|+++++...++.|..||.. |+.+..+..              
T Consensus       100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~--------------  163 (276)
T 3no2_A          100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL--------------  163 (276)
T ss_dssp             EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC--------------
T ss_pred             EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC--------------
Confidence            5666664 5666555431      22245567788999999999999999999998 998888864              


Q ss_pred             eeecCeEEEEeCCCCcEEEEecccCeE--------------Eee------eCCEEEEEEecCCCeEEEEe
Q 043942          137 SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGH------IDAIQSLSVSAIRESLVSVS  186 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~------~~~i~~~~~~~~~~~l~s~~  186 (216)
                        ...+..+...+++++++++..++.+              ...      ...+..+...++|+++++..
T Consensus       164 --~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          164 --SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             --SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             --CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence              1234445666777777776666555              111      12377888889999888763

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.49  E-value=2e-11  Score=89.13  Aligned_cols=171  Identities=11%  Similarity=0.056  Sum_probs=112.4

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-------cc---cCc--------------
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-------GI---EDS--------------   62 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-------~~---~~~--------------   62 (216)
                      ...+..+...+.+++++|+|+++++...++.|.+||..+++..........       .+   .+|              
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~  140 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP  140 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence            456666777899999999999888887788999999988765433221100       01   233              


Q ss_pred             -------------EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC-CCce---eEEeecccc
Q 043942           63 -------------TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK-GGEN---FHAIRRSSL  125 (216)
Q Consensus        63 -------------~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~---~~~~~~~~~  125 (216)
                                   .|..++.. ++ +..+..+......++|+|+++.+++.+.++.|.+||+. +++.   ...+..   
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~---  215 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV---  215 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC---
T ss_pred             cccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC---
Confidence                         33334433 32 23344455667899999999988778888999999997 4543   222211   


Q ss_pred             cccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEE-ecCCCeEEEEeCCCcE
Q 043942          126 EFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSV-SAIRESLVSVSVDGTA  191 (216)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~-~~~~~~l~s~~~d~~v  191 (216)
                                  ....+..++++++|++.++.  ++.+             ..+.. +.+++| +|+++.|++++.+ .+
T Consensus       216 ------------~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l  279 (296)
T 3e5z_A          216 ------------EPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EF  279 (296)
T ss_dssp             ------------SSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EE
T ss_pred             ------------CCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eE
Confidence                        33445678889999866655  4444             22333 788999 5899888888765 34


Q ss_pred             EEEEccc
Q 043942          192 RVFEIAE  198 (216)
Q Consensus       192 ~vw~~~~  198 (216)
                      .-++.++
T Consensus       280 ~~~~~~~  286 (296)
T 3e5z_A          280 WSIETNV  286 (296)
T ss_dssp             EEEECSC
T ss_pred             EEEEccc
Confidence            4444443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.47  E-value=9.4e-13  Score=106.32  Aligned_cols=176  Identities=12%  Similarity=0.050  Sum_probs=118.4

Q ss_pred             EeeccccceEEEEEccCCCEEEEE--cCCCcEEEEECCCCceEEEEeCC-----------------------CCc-c---
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASG--GFHGLVQNRDTSSRNLQCTVEGP-----------------------RGG-I---   59 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~--~~d~~v~vwd~~~~~~~~~~~~~-----------------------~~~-~---   59 (216)
                      .+.+|...+..+++++++-++++.  +.++...+|....+.....+..+                       ... +   
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            355788999999999887777777  66888999985433222222211                       111 1   


Q ss_pred             --cCcEEEEEECC--Ccceeeeeec-----cCCCeeEEEEcCCCcEEEEecCC----------CeEEEEeCCC------C
Q 043942           60 --EDSTVWMWNAD--RGAYLNMFSG-----HGSGLTCGDFTTDGKTICTGSDN----------ATLSIWNPKG------G  114 (216)
Q Consensus        60 --~~~~v~i~d~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~t~~~d----------~~i~~wd~~~------~  114 (216)
                        .+..|+++++.  .......+..     |...+..++|+|||+.|++++.+          ..|++||+.+      +
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  177 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS  177 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred             ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence              23445666655  2033344544     56678899999999999988876          5899999987      4


Q ss_pred             ceeEEee-cccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc-------------------C---eE----Eeee
Q 043942          115 ENFHAIR-RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD-------------------G---KV----DGHI  167 (216)
Q Consensus       115 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------------------~---~i----~~~~  167 (216)
                      +. ..+. .               +...+..++|+|||++|+.++.+                   |   ..    ..+.
T Consensus       178 ~~-~~l~~~---------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~  241 (662)
T 3azo_A          178 AV-RELSDD---------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE  241 (662)
T ss_dssp             GS-EESSCS---------------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred             ce-eEEEec---------------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence            43 3333 2               44566778999999998876533                   2   11    2235


Q ss_pred             CCEEEEEEecCCCeEEEEeCCC--cEEEEEccccc
Q 043942          168 DAIQSLSVSAIRESLVSVSVDG--TARVFEIAEFR  200 (216)
Q Consensus       168 ~~i~~~~~~~~~~~l~s~~~d~--~v~vw~~~~~~  200 (216)
                      ..+..+.|+|||+++++++.++  .|.+||+.+++
T Consensus       242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~  276 (662)
T 3azo_A          242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA  276 (662)
T ss_dssp             BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred             ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence            6788999999999878888888  56666654544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.46  E-value=3.3e-12  Score=96.15  Aligned_cols=145  Identities=12%  Similarity=0.058  Sum_probs=102.9

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK   95 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~   95 (216)
                      +++.+++++...++++|+.++ +++|++.+.+....  .     ..+.        .++.... .+.. |+.++|  +++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~-----~~~~--------~~~~~~~-~lp~-V~~l~f--d~~   98 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--S-----DSTP--------LTFKWEK-EIPD-VIFVCF--HGD   98 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--S-----SSCC--------CCCSEEE-ECTT-EEEEEE--ETT
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--c-----cccc--------ccceEEe-eCCC-eeEEEE--CCC
Confidence            689999999999999999874 55587653320000  0     0000        0111122 3556 999999  899


Q ss_pred             EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------Ee
Q 043942           96 TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------DG  165 (216)
Q Consensus        96 ~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------~~  165 (216)
                      +|+++ .++.|++||+++.........               +..++.++.+.+.  .+++++.||.+          ..
T Consensus        99 ~L~v~-~~~~l~v~dv~sl~~~~~~~~---------------~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~  160 (388)
T 1xip_A           99 QVLVS-TRNALYSLDLEELSEFRTVTS---------------FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ  160 (388)
T ss_dssp             EEEEE-ESSEEEEEESSSTTCEEEEEE---------------CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEE-cCCcEEEEEchhhhccCccce---------------eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc
Confidence            99998 889999999987765544443               5556777666543  27778888887          44


Q ss_pred             eeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          166 HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       166 ~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +...|++++|||+|  ++.+..||++++|+....+
T Consensus       161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             EEESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred             ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence            56799999999999  6778899999999887666

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.44  E-value=2.5e-11  Score=90.36  Aligned_cols=161  Identities=11%  Similarity=0.135  Sum_probs=103.2

Q ss_pred             cceEEEEEccCCCEEEEEcCC---C--cEEEEECCCCceEEEEeCCC---------Cc-c----c---------------
Q 043942           15 DSFSSLAFSTDGQLLASGGFH---G--LVQNRDTSSRNLQCTVEGPR---------GG-I----E---------------   60 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d---~--~v~vwd~~~~~~~~~~~~~~---------~~-~----~---------------   60 (216)
                      ..+..++|+|||++|+.++.+   +  .|.+||+.+++.......+.         +. +    .               
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            457789999999999987754   2  37888888776544332211         11 0    1               


Q ss_pred             ------------CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC-------eEEEEeCCCCceeEEee
Q 043942           61 ------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA-------TLSIWNPKGGENFHAIR  121 (216)
Q Consensus        61 ------------~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~-------~i~~wd~~~~~~~~~~~  121 (216)
                                  ...|++||+.+++.+..+.. . .+..++|+|+| +++++..+.       ...+|.+.+++. ..+.
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~  214 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMF  214 (347)
T ss_dssp             CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEE
T ss_pred             eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEec
Confidence                        25789999988876455554 3 78899999999 777775442       334443334443 3332


Q ss_pred             cccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC--------eE------------EeeeCCEEE-EEEecCCC
Q 043942          122 RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG--------KV------------DGHIDAIQS-LSVSAIRE  180 (216)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------~i------------~~~~~~i~~-~~~~~~~~  180 (216)
                      .               + ..+..+  +|+|+.|+..+.++        .+            ..+...+.. +.|+ ++ 
T Consensus       215 ~---------------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg-  274 (347)
T 2gop_A          215 E---------------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK-  274 (347)
T ss_dssp             E---------------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-
T ss_pred             c---------------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc-Cc-
Confidence            2               2 333333  78888776655332        22            223456775 8899 88 


Q ss_pred             eEEEEeCCCcEEEEEccccc
Q 043942          181 SLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       181 ~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ++++++.++.+++| +.+++
T Consensus       275 ~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          275 VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             EEEEEEETTEEEEE-EESSS
T ss_pred             EEEEEecCCcEEEE-EcCCc
Confidence            88888999999999 87544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.43  E-value=1.4e-11  Score=100.23  Aligned_cols=168  Identities=14%  Similarity=0.081  Sum_probs=105.9

Q ss_pred             ccccceEEEEEccCCCEEE-----EEcCCCcEEEEECCCCceE-EE-EeCCC-Ccc-------------cCc--------
Q 043942           12 GHKDSFSSLAFSTDGQLLA-----SGGFHGLVQNRDTSSRNLQ-CT-VEGPR-GGI-------------EDS--------   62 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~-----s~~~d~~v~vwd~~~~~~~-~~-~~~~~-~~~-------------~~~--------   62 (216)
                      +|...+..++|||||++||     .|+.+..|++||+.+++.. .. +.... ..+             .+.        
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            3555789999999999998     4444578999999998765 21 11111 111             222        


Q ss_pred             -----EEEEEECCCcc----eeeeeeccCCCeeEEEEcCCCcEEEEecCCC----eEEEEeCCCCceeEEeecccccccc
Q 043942           63 -----TVWMWNADRGA----YLNMFSGHGSGLTCGDFTTDGKTICTGSDNA----TLSIWNPKGGENFHAIRRSSLEFSL  129 (216)
Q Consensus        63 -----~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~  129 (216)
                           .|++|++.++.    .+.....+...+..+.|+|||++|+.++.++    .|++||..++.......        
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~--------  269 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK--------  269 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE--------
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec--------
Confidence                 39999998775    3333334556788999999999998877665    68888766554333322        


Q ss_pred             cceEEEeeeecCeEEEEeCCCCcEEEEecc---cCeE----------------Eee--eCCEEEEEEecCCCeEEEEeCC
Q 043942          130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCV---DGKV----------------DGH--IDAIQSLSVSAIRESLVSVSVD  188 (216)
Q Consensus       130 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~~~i----------------~~~--~~~i~~~~~~~~~~~l~s~~~d  188 (216)
                              +...+....+ ++|.+++....   ++.+                ..+  ...+..++|+ ++.++++...|
T Consensus       270 --------~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d  339 (695)
T 2bkl_A          270 --------GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD  339 (695)
T ss_dssp             --------CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET
T ss_pred             --------CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC
Confidence                    2223333334 33443332221   2222                222  3347778887 67788888889


Q ss_pred             CcEEEEEcc
Q 043942          189 GTARVFEIA  197 (216)
Q Consensus       189 ~~v~vw~~~  197 (216)
                      +..++|.+.
T Consensus       340 g~~~l~~~~  348 (695)
T 2bkl_A          340 ATSEVRVAT  348 (695)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            998888765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.42  E-value=1.2e-11  Score=91.62  Aligned_cols=168  Identities=11%  Similarity=0.093  Sum_probs=113.8

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-----------Ccc-----cCcEEEEEECCCcceeeee
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-----------GGI-----EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-----------~~~-----~~~~v~i~d~~~~~~~~~~   78 (216)
                      ..|.++.|++++..++..+.++.++.|.   ++....+..+.           ..+     .++.|.+||..+++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCcccc---cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            3467778888777666666677777772   22222222211           111     5678999999887765544


Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCC----CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDN----ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      ..+...+.+++++|+++++++...+    +.|.+||..++.....+....             ....+..++++|+|+++
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~~~~~~i~~d~~g~l~  149 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS-------------TAYCIDDMVFDSKGGFY  149 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS-------------SCCCEEEEEECTTSCEE
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc-------------cCCcccceEECCCCCEE
Confidence            4566789999999999988887766    689999998776543332100             33568899999999877


Q ss_pred             EEecc------cCeE-------------EeeeCCEEEEEEecCCCeEE-EEeCCCcEEEEEccc
Q 043942          155 VTGCV------DGKV-------------DGHIDAIQSLSVSAIRESLV-SVSVDGTARVFEIAE  198 (216)
Q Consensus       155 ~~~~~------~~~i-------------~~~~~~i~~~~~~~~~~~l~-s~~~d~~v~vw~~~~  198 (216)
                      ++...      .+.+             ......+..++|+|++++|+ +.+.++.|++|++.+
T Consensus       150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          150 FTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             EEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            76553      2333             12234578899999998664 455678999999864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=9.6e-11  Score=84.11  Aligned_cols=170  Identities=14%  Similarity=0.012  Sum_probs=112.1

Q ss_pred             ceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCC-CC--cc------------cCcEEEEEECCCcceeeeee
Q 043942           16 SFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGP-RG--GI------------EDSTVWMWNADRGAYLNMFS   79 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~-~~--~~------------~~~~v~i~d~~~~~~~~~~~   79 (216)
                      ...+++++++|++++ +...++.|.+||..+.......... ..  .+            .++.|.+||...........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~  104 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF  104 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence            678999999999777 5477889999997655432211111 00  01            35678888876544322211


Q ss_pred             ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942           80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      .....+..++++++++.+++...++.|.+|+..+.........               ....+..++++++|+++++...
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------------~~~~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---------------GLNDPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---------------SCCSCCCEEECTTCCEEEEEGG
T ss_pred             CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---------------cCCCceeEEEeCCCCEEEEECC
Confidence            2235688999999999888877888999998665443221111               2345678899999987777666


Q ss_pred             cCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          160 DGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       160 ~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ++.+              ..+...+..++++++|.++++...++.|.+|+.....
T Consensus       170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            6666              1122568899999999877777778999999986543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.39  E-value=3.5e-10  Score=89.66  Aligned_cols=173  Identities=11%  Similarity=0.002  Sum_probs=113.1

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH   81 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~   81 (216)
                      ++++.+.++... ..+..+.++|||+++++++.|+.|.+||+..                        .+++.+..+.. 
T Consensus       185 ~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~------------------------~t~~~v~~i~~-  238 (567)
T 1qks_A          185 STYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM------------------------KEPTTVAEIKI-  238 (567)
T ss_dssp             TTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS------------------------SSCCEEEEEEC-
T ss_pred             CCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC------------------------CCCcEeEEEec-
Confidence            467777777643 3567899999999999988777777666630                        13333344442 


Q ss_pred             CCCeeEEEEc----CCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeee-ecCeEEEEeCCCCcE-E
Q 043942           82 GSGLTCGDFT----TDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL-YDGVTCLSWPGTSKY-L  154 (216)
Q Consensus        82 ~~~v~~~~~~----~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l  154 (216)
                      ......++|+    |||+++++++ .++.+.++|..+.+.+..+...........     .| ...+..+..++++.. +
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~-----~~p~~rva~i~~s~~~~~~v  313 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE-----YHPEPRVAAILASHYRPEFI  313 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC-----EESCCCEEEEEECSSSSEEE
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc-----ccCCCceEEEEEcCCCCEEE
Confidence            2335789999    6999888776 569999999999998887764221100000     01 124566667776543 3


Q ss_pred             EEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEcccccceeec
Q 043942          155 VTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       155 ~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~~~~~~~  205 (216)
                      +.....|.+               ........++.|+|+|++++++. .+++|.++|+.+++....+
T Consensus       314 v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          314 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence            333444554               11233556789999999887655 5789999999988765433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.38  E-value=1.9e-10  Score=85.28  Aligned_cols=166  Identities=8%  Similarity=-0.062  Sum_probs=117.5

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCcceeeeeec
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAYLNMFSG   80 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~~~~~~   80 (216)
                      ....+.+. +++++++...++.|.+||..+++.+.++.....+.               .++.|.+||+.+++....+..
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~  123 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC  123 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence            45677774 35566677778999999999999988875432221               478899999999887766653


Q ss_pred             cC-----CCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           81 HG-----SGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        81 ~~-----~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      ..     .....+++ .+++.+++.. .++.|.++|+.+++....+..                ......+.++|+|+++
T Consensus       124 g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----------------g~~p~~i~~~~dG~l~  186 (328)
T 3dsm_A          124 PDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----------------GIQPTSLVMDKYNKMW  186 (328)
T ss_dssp             TTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----------------SSCBCCCEECTTSEEE
T ss_pred             CCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----------------CCCccceEEcCCCCEE
Confidence            32     14567777 3444444443 488999999999988777753                2334677888988877


Q ss_pred             EEeccc----------CeE----------E-e--e--eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          155 VTGCVD----------GKV----------D-G--H--IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       155 ~~~~~~----------~~i----------~-~--~--~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      +++..+          +.+          . .  .  ......++++|++++|..+..  .|.+||..+++.
T Consensus       187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          187 TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             EEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence            766554          445          1 1  1  125789999999998887754  899999987664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=3.8e-11  Score=90.41  Aligned_cols=129  Identities=11%  Similarity=0.018  Sum_probs=94.2

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeee
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNM   77 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~   77 (216)
                      .+.. |+.++|  |+++|+++ .++.|++||+.+.........+...+              .+|.+.+||+.++.... 
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-  160 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-  160 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-
Confidence            4666 999999  89999999 88999999988765443332222211              89999999999776643 


Q ss_pred             eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           78 FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        78 ~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                         +...|+|++|+|+|  ++.|..||.+++|+...+..  ..++.........      .++...|.++.|.+++.+++
T Consensus       161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~------~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEEL------PVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             ---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTS------CTTTSEEEEEEESSSSEEEE
T ss_pred             ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccc------cCCCeeEEEEEEecCCeEEE
Confidence               44579999999999  67788999999999887765  5556332110000      00457789999999888887


Q ss_pred             E
Q 043942          156 T  156 (216)
Q Consensus       156 ~  156 (216)
                      +
T Consensus       230 ~  230 (388)
T 1xip_A          230 V  230 (388)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.33  E-value=2.2e-09  Score=81.99  Aligned_cols=176  Identities=15%  Similarity=0.073  Sum_probs=114.4

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc-c-------------cCc--EEEEEECCCcceeeee
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG-I-------------EDS--TVWMWNADRGAYLNMF   78 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~-------------~~~--~v~i~d~~~~~~~~~~   78 (216)
                      .....++|+++++++++...++.|++||..+++..........+ +             .++  .|.+++...+.....+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~  210 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI  210 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence            46789999999998888888899999999987766554432211 1             212  7788887655443333


Q ss_pred             ----eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec-CeEEEEeCCC-Cc
Q 043942           79 ----SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD-GVTCLSWPGT-SK  152 (216)
Q Consensus        79 ----~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~  152 (216)
                          ......+.+++++|++..|..+..++.|+.||..++... .+.......         .... +...++|+|+ +.
T Consensus       211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g---------~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSG---------SLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCS---------CCCCSSCCEEEEETTTTE
T ss_pred             eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccC---------CCCCCccccEEEeCCCCE
Confidence                214456789999995555555777889999999876532 221100000         0011 1127888884 55


Q ss_pred             EEEEecccCeE------------Eee---------------eCCEEEEEEecCCCeEEEEe-CCCcEEEEEccccc
Q 043942          153 YLVTGCVDGKV------------DGH---------------IDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEFR  200 (216)
Q Consensus       153 ~l~~~~~~~~i------------~~~---------------~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~~  200 (216)
                      ++++-..++.|            .++               -.....++++|+|+++++-+ .++.|+.|++.+++
T Consensus       281 lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            55555555555            111               13478999999999888877 78999999976654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.32  E-value=3.6e-09  Score=76.76  Aligned_cols=172  Identities=5%  Similarity=-0.030  Sum_probs=117.3

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--CCcc----------------cCcEEEEEECCC
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--RGGI----------------EDSTVWMWNADR   71 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~~----------------~~~~v~i~d~~~   71 (216)
                      +..+...+.+++++++|+++++...++.|.+||.. ++.. .+..+  ....                .++.|..||.. 
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            44556789999999999988887778899999988 5433 22211  1111                35678888876 


Q ss_pred             cce-eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           72 GAY-LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        72 ~~~-~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      ++. ...+......+..+++.++++++++...++.|..||. +++....... .             ....+..++++++
T Consensus        87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~-~-------------~~~~~~~i~~~~~  151 (299)
T 2z2n_A           87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP-N-------------KGSYPSFITLGSD  151 (299)
T ss_dssp             SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS-S-------------TTCCEEEEEECTT
T ss_pred             CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC-C-------------CCCCCceEEEcCC
Confidence            322 1112224457889999999998888878889999998 5544322111 0             2345788899999


Q ss_pred             CcEEEEecccCeE---------E-----eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          151 SKYLVTGCVDGKV---------D-----GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       151 ~~~l~~~~~~~~i---------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +..+++...++.+         .     .....+..++++++|++.++...++.|.+|+. +++
T Consensus       152 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          152 NALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             CCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence            8877766555554         1     11245788999999997777767889999998 544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.31  E-value=2.6e-10  Score=93.03  Aligned_cols=182  Identities=11%  Similarity=0.090  Sum_probs=117.8

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCc----------------EEEEECCCCceE--EEEeCC--CCcc--
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGL----------------VQNRDTSSRNLQ--CTVEGP--RGGI--   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~----------------v~vwd~~~~~~~--~~~~~~--~~~~--   59 (216)
                      ++|+.+.....+ ..+..++|+|||+.|+.++.++.                |++|++.+++..  ..+...  ....  
T Consensus       159 ~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~  237 (710)
T 2xdw_A          159 DGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG  237 (710)
T ss_dssp             TTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             CCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence            455554432222 23678999999999999888766                999999887522  222221  1100  


Q ss_pred             --------------c-----CcEEEEEECCC------cc-eeeeeeccCCCeeEEEEcCCCcEEEEecCC----CeEEEE
Q 043942           60 --------------E-----DSTVWMWNADR------GA-YLNMFSGHGSGLTCGDFTTDGKTICTGSDN----ATLSIW  109 (216)
Q Consensus        60 --------------~-----~~~v~i~d~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d----~~i~~w  109 (216)
                                    .     +..|++||+.+      +. ....+..+...+.. .|+|+|+.|+..+.+    ..|.+|
T Consensus       238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence                          1     67899999986      43 35556666665554 488888877765543    369999


Q ss_pred             eCCCCce--eEEeecccccccccceEEEeeee--cCeEEEEeCCCCcEEEEecccCeE----------------EeeeCC
Q 043942          110 NPKGGEN--FHAIRRSSLEFSLNYWMICTSLY--DGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDA  169 (216)
Q Consensus       110 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~  169 (216)
                      |+.++..  ...+..               +.  ..+..+.|++++.++++...++..                ..+...
T Consensus       317 d~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~  381 (710)
T 2xdw_A          317 DFTDPEESKWKVLVP---------------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS  381 (710)
T ss_dssp             ETTSCCGGGCEEEEC---------------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSE
T ss_pred             eCCCCCcccceeccC---------------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCce
Confidence            9987642  233322               22  256778888777777777766643                122345


Q ss_pred             EEEEEEecCCCeEEEE-e---CCCcEEEEEccccc
Q 043942          170 IQSLSVSAIRESLVSV-S---VDGTARVFEIAEFR  200 (216)
Q Consensus       170 i~~~~~~~~~~~l~s~-~---~d~~v~vw~~~~~~  200 (216)
                      +..+.++|++..++.. +   ..+.++.||+.+++
T Consensus       382 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          382 VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7788899998765522 2   35789999998766

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.29  E-value=7e-09  Score=78.23  Aligned_cols=181  Identities=10%  Similarity=-0.080  Sum_probs=115.2

Q ss_pred             eEEEEEccCCCEEEEEcC--CCcEEEEECCCCceEEE-EeCCCCc-------------ccCcEEEEEECCCcceeeeee-
Q 043942           17 FSSLAFSTDGQLLASGGF--HGLVQNRDTSSRNLQCT-VEGPRGG-------------IEDSTVWMWNADRGAYLNMFS-   79 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~-~~~~~~~-------------~~~~~v~i~d~~~~~~~~~~~-   79 (216)
                      ...+.|+|||++|+.+..  +..|.++| .+++.... +..+...             ..++.+.++|. +++...... 
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~  204 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV  204 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec
Confidence            457899999999998874  47899999 99998888 6543210             06788889998 776653321 


Q ss_pred             ----ccCCC-eeEEEEcCCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           80 ----GHGSG-LTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        80 ----~~~~~-v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                          ....+ .....+.+++..++..+..+.+.+.|+..+..  ...+.......     ............+.++|+++
T Consensus       205 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~-----~~~~~~p~g~~~~~~s~d~~  279 (373)
T 2mad_H          205 GAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR-----KADTWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             cccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc-----cccceecCceEeEEECCCCC
Confidence                11111 12345666665555445788999999975532  22221100000     00000123344577899988


Q ss_pred             EEEEeccc----------CeE-------------EeeeCCEEEEEEecCCC-eEEEEe-CCCcEEEEEcccccceee
Q 043942          153 YLVTGCVD----------GKV-------------DGHIDAIQSLSVSAIRE-SLVSVS-VDGTARVFEIAEFRRATK  204 (216)
Q Consensus       153 ~l~~~~~~----------~~i-------------~~~~~~i~~~~~~~~~~-~l~s~~-~d~~v~vw~~~~~~~~~~  204 (216)
                      .++++..+          +.+             ........+++|+|||+ +++++. .++.|.++|+.+++....
T Consensus       280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            87775432          234             12234578999999999 777777 489999999999888766

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.29  E-value=9.3e-10  Score=81.82  Aligned_cols=166  Identities=19%  Similarity=0.184  Sum_probs=100.7

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCC---------------------------CcEEEEECCCCceEEEEeCC
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFH---------------------------GLVQNRDTSSRNLQCTVEGP   55 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---------------------------~~v~vwd~~~~~~~~~~~~~   55 (216)
                      +|+... +..+.. +..++|+|||+.|+.++.+                           ..|.+||+.+++....+...
T Consensus        94 ~g~~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~  171 (347)
T 2gop_A           94 TLSSKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP  171 (347)
T ss_dssp             TTEEEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred             CCceEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence            344433 333334 8999999999998887642                           56899999988763333321


Q ss_pred             -CCc-------c-----c---------CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC--------Ce
Q 043942           56 -RGG-------I-----E---------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN--------AT  105 (216)
Q Consensus        56 -~~~-------~-----~---------~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d--------~~  105 (216)
                       ...       +     .         ...|.++|  +++. ..+..+ ..+..+  +|+|+.|+.++.+        ..
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~  245 (347)
T 2gop_A          172 RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNK  245 (347)
T ss_dssp             TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCE
T ss_pred             CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccce
Confidence             000       1     0         12344444  3333 333334 444444  9999988877644        46


Q ss_pred             EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE-EEeCCCCcEEEEecccCeE------------EeeeCCEEE
Q 043942          106 LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC-LSWPGTSKYLVTGCVDGKV------------DGHIDAIQS  172 (216)
Q Consensus       106 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~i------------~~~~~~i~~  172 (216)
                      |.+||  +++.......               +...+.. +.|+ ++ ++++++.++..            ..+...|.+
T Consensus       246 l~~~d--~~~~~~l~~~---------------~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~~~~g~~~~~~~~~~~v~~  306 (347)
T 2gop_A          246 LYIYD--GKEVMGILDE---------------VDRGVGQAKIKD-GK-VYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMG  306 (347)
T ss_dssp             EEEEC--SSCEEESSTT---------------CCSEEEEEEEET-TE-EEEEEEETTEEEEEEESSSEEEEECSSSEEEE
T ss_pred             EEEEC--CCceEecccc---------------CCcccCCccEEc-Cc-EEEEEecCCcEEEEEcCCceEEEecCCCeEEe
Confidence            88888  4543332222               3455665 7888 77 77776666543            223456888


Q ss_pred             EEEecCCCeEEEEeCCCcE-EEEEcc
Q 043942          173 LSVSAIRESLVSVSVDGTA-RVFEIA  197 (216)
Q Consensus       173 ~~~~~~~~~l~s~~~d~~v-~vw~~~  197 (216)
                      ++|+|  .++++++.++.. .+|.+.
T Consensus       307 ~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          307 FDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEESS--SEEEEEECSSSCCEEEEES
T ss_pred             eeeeC--cEEEEEcCCCChHHheEeC
Confidence            99999  667777766654 777775

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.29  E-value=9.6e-09  Score=73.37  Aligned_cols=183  Identities=10%  Similarity=0.062  Sum_probs=123.2

Q ss_pred             CceeEEeecccc--ceEEEEEccCCCEEEEEcC--CCcEEEEECCCCceEEEEeCCCCcc----------------cCcE
Q 043942            4 GDWASEILGHKD--SFSSLAFSTDGQLLASGGF--HGLVQNRDTSSRNLQCTVEGPRGGI----------------EDST   63 (216)
Q Consensus         4 g~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~   63 (216)
                      .+.+.++. |..  ....++|++++.++++.+.  ++.|++.|+.+++.+..+.......                .++.
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~   87 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSE
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCE
Confidence            45666664 543  3579999998766665553  5799999999999999886433211                7899


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT  143 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  143 (216)
                      +.++|..+.+.+.++.....  ....+++|++.++++..++.|.++|..+.+....+......          .....++
T Consensus        88 v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~----------~p~~~~n  155 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG----------HRVIRLN  155 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT----------EECCCEE
T ss_pred             EEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC----------cccccce
Confidence            99999999988888763212  12335567887777778899999999998888777642100          0111355


Q ss_pred             EEEeCCCCcEEEEecccCeE--------------Eee-------------eCCEEEEEEecCCCe-EEEEeCCCcEEEEE
Q 043942          144 CLSWPGTSKYLVTGCVDGKV--------------DGH-------------IDAIQSLSVSAIRES-LVSVSVDGTARVFE  195 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~~~~~i--------------~~~-------------~~~i~~~~~~~~~~~-l~s~~~d~~v~vw~  195 (216)
                      .+.|. ++..++....++.|              ...             ..-...++|+|+++. ++++...+++.+-+
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            66666 55444444344444              100             024589999999864 55666788999988


Q ss_pred             ccccc
Q 043942          196 IAEFR  200 (216)
Q Consensus       196 ~~~~~  200 (216)
                      +....
T Consensus       235 l~~~~  239 (266)
T 2iwa_A          235 LHLVR  239 (266)
T ss_dssp             EEECC
T ss_pred             Eeccc
Confidence            87653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.27  E-value=4.7e-09  Score=76.85  Aligned_cols=171  Identities=9%  Similarity=0.049  Sum_probs=106.2

Q ss_pred             cccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEE-EeCCC----C---cc-------------cC---------
Q 043942           13 HKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCT-VEGPR----G---GI-------------ED---------   61 (216)
Q Consensus        13 h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~----~---~~-------------~~---------   61 (216)
                      +...+.+++++++ |+++++.. ...|.+||.. ++.... .....    .   .+             .+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4567899999999 76555554 4478899988 654332 11110    0   00             11         


Q ss_pred             ------cEEEEEECCCcceeeeeeccCCCeeEEEEc----CCCcEEE-EecCCCeEEEEeCC-CCceeE--Eeecccccc
Q 043942           62 ------STVWMWNADRGAYLNMFSGHGSGLTCGDFT----TDGKTIC-TGSDNATLSIWNPK-GGENFH--AIRRSSLEF  127 (216)
Q Consensus        62 ------~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~-t~~~d~~i~~wd~~-~~~~~~--~~~~~~~~~  127 (216)
                            +.|..||.. ++... +..+......++|+    |+++.+. +...++.|.+||+. +++...  .+..     
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~-----  219 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH-----  219 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE-----
T ss_pred             cccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE-----
Confidence                  456666654 43322 22233456889999    9997654 44578899999986 443211  1110     


Q ss_pred             cccceEEEeeee-cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeE-EEEeCCCcE
Q 043942          128 SLNYWMICTSLY-DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESL-VSVSVDGTA  191 (216)
Q Consensus       128 ~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l-~s~~~d~~v  191 (216)
                             ...+. ..+..++++++|+++++...++.+              ..+...+.+++++|+++.| ++...++.|
T Consensus       220 -------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l  292 (314)
T 1pjx_A          220 -------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAV  292 (314)
T ss_dssp             -------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             -------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeE
Confidence                   00022 456788999999887776555555              2233678999999999955 455567899


Q ss_pred             EEEEcccc
Q 043942          192 RVFEIAEF  199 (216)
Q Consensus       192 ~vw~~~~~  199 (216)
                      ..|++...
T Consensus       293 ~~~~~~~~  300 (314)
T 1pjx_A          293 WKFEWQRN  300 (314)
T ss_dssp             EEEECSSC
T ss_pred             EEEeCCCC
Confidence            99998753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.26  E-value=2.5e-08  Score=72.77  Aligned_cols=178  Identities=13%  Similarity=0.053  Sum_probs=112.9

Q ss_pred             eeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCC----------cc---cCcEEEEEECCCccee
Q 043942           10 ILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----------GI---EDSTVWMWNADRGAYL   75 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----------~~---~~~~v~i~d~~~~~~~   75 (216)
                      +..+..-..+..|+|++ .++++...++.|+.||..+++.. .+.....          ..   .+..|.+||..+++..
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAV   86 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEE
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEE
Confidence            34444556789999954 56666677899999999887542 2222111          11   4567889998877543


Q ss_pred             eeeec----cCCCeeEEEEcCCCcEEEEecC-----------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           76 NMFSG----HGSGLTCGDFTTDGKTICTGSD-----------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        76 ~~~~~----~~~~v~~~~~~~~~~~l~t~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      .....    ....+..++++|+|+++++...           .+.|..+|.. ++... +..               ...
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~---------------~~~  149 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFD---------------QVD  149 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEE---------------EES
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-Eee---------------ccc
Confidence            32221    1235788999999997775432           2344444433 33222 221               344


Q ss_pred             CeEEEEeCCCCcEEEE-ecccCeEE---------------------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          141 GVTCLSWPGTSKYLVT-GCVDGKVD---------------------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~-~~~~~~i~---------------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ..+.++|+|+++.++. .+.++.|.                     .+...+..++++++|++.++....+.|.+||..+
T Consensus       150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t  229 (297)
T 3g4e_A          150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT  229 (297)
T ss_dssp             BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred             cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence            5678999999986654 44455551                     0113467889999998888877788899999987


Q ss_pred             ccceeec
Q 043942          199 FRRATKA  205 (216)
Q Consensus       199 ~~~~~~~  205 (216)
                      ++....+
T Consensus       230 G~~~~~i  236 (297)
T 3g4e_A          230 GKRLQTV  236 (297)
T ss_dssp             CCEEEEE
T ss_pred             ceEEEEE
Confidence            7765543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.25  E-value=2.1e-08  Score=72.75  Aligned_cols=166  Identities=11%  Similarity=0.067  Sum_probs=113.8

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--C-----------Ccc-----cCcEEEEEECCCcce
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--R-----------GGI-----EDSTVWMWNADRGAY   74 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~-----------~~~-----~~~~v~i~d~~~~~~   74 (216)
                      +...+.+++++++|+++++...++.|..||.. ++. ..+..+  .           ..+     .++.|..||. +++.
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  131 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI  131 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence            44678999999999988888778889999976 332 222221  1           111     3567778887 4443


Q ss_pred             eee-eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEE-eecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           75 LNM-FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA-IRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        75 ~~~-~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      ... .......+..+++.++++.+++...++.|..||. +++.... ...               ....+..+++++++.
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~---------------~~~~~~~i~~~~~g~  195 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPT---------------PASGPVGITKGNDDA  195 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS---------------TTCCEEEEEECTTSS
T ss_pred             EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCC---------------CCCcceeEEECCCCC
Confidence            322 2223456889999999988888777889999998 5654432 111               234577889999888


Q ss_pred             EEEEecccCeE---------E-----eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          153 YLVTGCVDGKV---------D-----GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       153 ~l~~~~~~~~i---------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      +.++...++.+         .     .+...+.+++++++|++.++...++.|..||..
T Consensus       196 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          196 LWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             EEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence            76665555544         1     122568899999999977776678899999973

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.25  E-value=1.1e-08  Score=74.81  Aligned_cols=175  Identities=11%  Similarity=0.133  Sum_probs=113.8

Q ss_pred             eeccccceEEEEEccCCCEEEE-------EcCCCcEEEEECCCCceEEEEe---------------CCC-Ccc----cCc
Q 043942           10 ILGHKDSFSSLAFSTDGQLLAS-------GGFHGLVQNRDTSSRNLQCTVE---------------GPR-GGI----EDS   62 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s-------~~~d~~v~vwd~~~~~~~~~~~---------------~~~-~~~----~~~   62 (216)
                      +...-....+++|+++|+++++       ...++.|.+||..+++......               .+. ..+    ...
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~   92 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL   92 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence            3444456789999999988888       5678899999988776543211               011 111    234


Q ss_pred             EEEEEECCCcceeee-eec----cCCCeeEEEEcCCCcEEEEecCC---------------CeEEEEeCCCCceeEEeec
Q 043942           63 TVWMWNADRGAYLNM-FSG----HGSGLTCGDFTTDGKTICTGSDN---------------ATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~t~~~d---------------~~i~~wd~~~~~~~~~~~~  122 (216)
                      .|.+||.. ++.... ...    ....+.+++++++++++++...+               +.|..||.. ++...... 
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence            67778877 554322 211    12357899999999988877655               567778766 54333222 


Q ss_pred             ccccccccceEEEeeeecCeEEEEeC----CCCcEEEEe-cccCeE-----E---------------eee-CCEEEEEEe
Q 043942          123 SSLEFSLNYWMICTSLYDGVTCLSWP----GTSKYLVTG-CVDGKV-----D---------------GHI-DAIQSLSVS  176 (216)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~~~~i-----~---------------~~~-~~i~~~~~~  176 (216)
                                     .......++++    |+++.++.+ ..++.+     .               .+. ..+..++++
T Consensus       170 ---------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d  234 (314)
T 1pjx_A          170 ---------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD  234 (314)
T ss_dssp             ---------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred             ---------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence                           33456778888    888655444 344444     0               001 347788999


Q ss_pred             cCCCeEEEEeCCCcEEEEEcccccce
Q 043942          177 AIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       177 ~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      ++|+++++...++.|.+||..+++..
T Consensus       235 ~~G~l~v~~~~~~~i~~~d~~~g~~~  260 (314)
T 1pjx_A          235 EDNNLLVANWGSSHIEVFGPDGGQPK  260 (314)
T ss_dssp             TTCCEEEEEETTTEEEEECTTCBSCS
T ss_pred             CCCCEEEEEcCCCEEEEEcCCCCcEe
Confidence            99998888878899999998755543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.22  E-value=1.9e-09  Score=88.40  Aligned_cols=168  Identities=17%  Similarity=0.162  Sum_probs=100.9

Q ss_pred             cccceEEEEEccCCCEEEEEcCC-----CcEEEEECCCCceEEEE-eC---------CCCcc----c-------------
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFH-----GLVQNRDTSSRNLQCTV-EG---------PRGGI----E-------------   60 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~-~~---------~~~~~----~-------------   60 (216)
                      |...+..++|||||++||.++.+     ..|++||+.+++.+... ..         +...+    .             
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~  240 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALN  240 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CC
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCC
Confidence            33468899999999999877644     46999999998765431 11         11111    1             


Q ss_pred             -CcEEEEEECCCcce--eeeee--ccCCCeeEEEEcCCCcEEEEecCCC-----eEEEEeCCCC--ceeEEeeccccccc
Q 043942           61 -DSTVWMWNADRGAY--LNMFS--GHGSGLTCGDFTTDGKTICTGSDNA-----TLSIWNPKGG--ENFHAIRRSSLEFS  128 (216)
Q Consensus        61 -~~~v~i~d~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~t~~~d~-----~i~~wd~~~~--~~~~~~~~~~~~~~  128 (216)
                       ...|++|++.++..  ...+.  .+...+..+.|+|||++|+..+.++     .|++||+.++  +....+..      
T Consensus       241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~------  314 (741)
T 1yr2_A          241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP------  314 (741)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC------
T ss_pred             CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC------
Confidence             33588999877652  22222  2334588999999999988776543     8999999876  31333332      


Q ss_pred             ccceEEEeeeecCeEEEEeCCCCcEEEEecccC----eE----------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942          129 LNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG----KV----------------DGHIDAIQSLSVSAIRESLVSVSVD  188 (216)
Q Consensus       129 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d  188 (216)
                               +........ +|+|..|+..+.++    .+                ..+...+..+.|+ ++.++++...|
T Consensus       315 ---------~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d  383 (741)
T 1yr2_A          315 ---------DLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHD  383 (741)
T ss_dssp             ---------SSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEET
T ss_pred             ---------CCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEEC
Confidence                     122222222 24555444333211    12                1122335567776 55677788889


Q ss_pred             CcEEEEEcc
Q 043942          189 GTARVFEIA  197 (216)
Q Consensus       189 ~~v~vw~~~  197 (216)
                      +..++|.+.
T Consensus       384 g~~~l~~~~  392 (741)
T 1yr2_A          384 AKSQVLAFD  392 (741)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            988887665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.21  E-value=5.8e-09  Score=78.33  Aligned_cols=97  Identities=18%  Similarity=0.108  Sum_probs=72.5

Q ss_pred             CCCEEEEEc------CCCcEEEEECCCCceEEEEeCCCCcc-------------c-----------CcEEEEEECCCcce
Q 043942           25 DGQLLASGG------FHGLVQNRDTSSRNLQCTVEGPRGGI-------------E-----------DSTVWMWNADRGAY   74 (216)
Q Consensus        25 ~~~~l~s~~------~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~-----------~~~v~i~d~~~~~~   74 (216)
                      ++++++...      .|+.|.+||..+++.+..+.....+.             .           ++.|.+||..+++.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~   93 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF   93 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence            555555543      47799999999998877765432211             1           45799999999888


Q ss_pred             eeeeecc------CCCeeEEEEcCCCcEEEEecC--CCeEEEEeCCCCceeEE-ee
Q 043942           75 LNMFSGH------GSGLTCGDFTTDGKTICTGSD--NATLSIWNPKGGENFHA-IR  121 (216)
Q Consensus        75 ~~~~~~~------~~~v~~~~~~~~~~~l~t~~~--d~~i~~wd~~~~~~~~~-~~  121 (216)
                      +..+...      ......++++|+|++|+++..  ++.|.+||+.+++.+.. +.
T Consensus        94 ~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~  149 (361)
T 2oiz_A           94 EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA  149 (361)
T ss_dssp             EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred             EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence            8777532      245778999999999998863  68999999999988776 44

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.19  E-value=1.3e-08  Score=77.76  Aligned_cols=198  Identities=13%  Similarity=0.029  Sum_probs=114.3

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCC--------CCc--c--
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGP--------RGG--I--   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~--------~~~--~--   59 (216)
                      .+++.+.++..-..+  .++++|||++++.+.          .++.|.++|..+++.+.++...        ..+  +  
T Consensus       107 ~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~  184 (426)
T 3c75_H          107 STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL  184 (426)
T ss_dssp             TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred             CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence            467777777755555  899999999888776          3678999999999999888643        111  1  


Q ss_pred             ------------c-CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEE----ee
Q 043942           60 ------------E-DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHA----IR  121 (216)
Q Consensus        60 ------------~-~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~----~~  121 (216)
                                  . ++.|.++|+.+++.+.++.-...    ....|++ +.+++.+.||.+.+.+..+++....    +.
T Consensus       185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~  260 (426)
T 3c75_H          185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH  260 (426)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred             cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence                        2 57899999998887777653111    1111211 2223333334433333322221110    00


Q ss_pred             cc------cc--cccccc---------eEEEee-----------------------eecCeEEEEeCCCCcEEEEecc--
Q 043942          122 RS------SL--EFSLNY---------WMICTS-----------------------LYDGVTCLSWPGTSKYLVTGCV--  159 (216)
Q Consensus       122 ~~------~~--~~~~~~---------~~~~~~-----------------------~~~~v~~~~~~~~~~~l~~~~~--  159 (216)
                      ..      ..  ......         ......                       .......++++|+++.+++...  
T Consensus       261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~  340 (426)
T 3c75_H          261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR  340 (426)
T ss_dssp             CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred             cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence            00      00  000000         000000                       1111223678888887666542  


Q ss_pred             --------cCeE-------------EeeeCCEEEEEEecCCC-eEEEEe-CCCcEEEEEcccccceeec
Q 043942          160 --------DGKV-------------DGHIDAIQSLSVSAIRE-SLVSVS-VDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       160 --------~~~i-------------~~~~~~i~~~~~~~~~~-~l~s~~-~d~~v~vw~~~~~~~~~~~  205 (216)
                              .+.+             ..-......+.|+|||+ ++++.. .++.|.++|+.+.+....+
T Consensus       341 ~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          341 DEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                    1233             12223578899999999 888777 5899999999999887765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.17  E-value=1.2e-07  Score=68.63  Aligned_cols=166  Identities=10%  Similarity=0.047  Sum_probs=114.3

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC--Cc-----------c-----cCcEEEEEECCCcce
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR--GG-----------I-----EDSTVWMWNADRGAY   74 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~-----------~-----~~~~v~i~d~~~~~~   74 (216)
                      ....+.+++++++|++.++...++.|.+||.. ++... +..+.  ..           +     .++.|..||.. ++.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            44678999999999988888788999999988 54433 22211  11           1     35678888877 443


Q ss_pred             e-eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942           75 L-NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus        75 ~-~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                      . .........+.++++.++++++++...++.|..+|.. ++... +....             ....+..+++++++++
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~-------------~~~~~~~i~~d~~g~l  159 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDLPN-------------KGSYPAFITLGSDNAL  159 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EECSS-------------TTCCEEEEEECTTSSE
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccCCC-------------CCCCceeEEECCCCCE
Confidence            2 1222234568899999999988888778899999987 55432 22100             2346788899999886


Q ss_pred             EEEecccCeE---------E-----eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          154 LVTGCVDGKV---------D-----GHIDAIQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       154 l~~~~~~~~i---------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                      .++...++.+         .     .....+..++++++|++.++....+.|.+|+.
T Consensus       160 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          160 WFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             EEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence            6665545554         1     11245789999999987777666778999987

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.15  E-value=3.5e-08  Score=69.84  Aligned_cols=113  Identities=14%  Similarity=0.230  Sum_probs=85.1

Q ss_pred             ceeEEeeccccc--eEEEEEccCCCEEEEEcCCC--cEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942            5 DWASEILGHKDS--FSSLAFSTDGQLLASGGFHG--LVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV   64 (216)
Q Consensus         5 ~~~~~~~~h~~~--v~~~~~s~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v   64 (216)
                      +.++++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+..+....                .++.+
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence            345556 35543  4789998 677777777766  89999999999999887655321                68999


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .+||..+.+.+.++.-..   ....++++++.|+.+..++.|.++|..+.+....+..
T Consensus       110 ~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             EEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             EEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            999999999998887432   2233345677777777788999999999988877765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.13  E-value=1.2e-08  Score=76.73  Aligned_cols=186  Identities=12%  Similarity=0.059  Sum_probs=116.2

Q ss_pred             ceEEEEEccCCCEEEEEcC--CCcEEEEECCCCceEEEEeCCCCc-------------ccCcEEEEEECCC-cceeeeee
Q 043942           16 SFSSLAFSTDGQLLASGGF--HGLVQNRDTSSRNLQCTVEGPRGG-------------IEDSTVWMWNADR-GAYLNMFS   79 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~-------------~~~~~v~i~d~~~-~~~~~~~~   79 (216)
                      ....++++|||++++.+..  ++.|.++|+.+++.+.++..+...             ..||.+.+.++.+ ++......
T Consensus       138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~  217 (386)
T 3sjl_D          138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT  217 (386)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred             CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec
Confidence            3456899999999888764  689999999999999988653210             1788899999876 55432211


Q ss_pred             cc----CCCee-EEEEc-CCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942           80 GH----GSGLT-CGDFT-TDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS  151 (216)
Q Consensus        80 ~~----~~~v~-~~~~~-~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  151 (216)
                      .+    ...+. ...|. ++|++++ .+.++.+++.|+.++..  ...+..-........+     .......+++++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~-----~p~g~q~~a~~~~~  291 (386)
T 3sjl_D          218 EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW-----RPGGWQQVAYHRAL  291 (386)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE-----EECSSSCEEEETTT
T ss_pred             ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccc-----cCCCcceeeECCCC
Confidence            11    11221 24554 6776555 45589999999976542  2222100000000000     22334456668888


Q ss_pred             cEEEEeccc----------CeE-------------EeeeCCEEEEEEecCCC-eEEEE-eCCCcEEEEEcccccceeecC
Q 043942          152 KYLVTGCVD----------GKV-------------DGHIDAIQSLSVSAIRE-SLVSV-SVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       152 ~~l~~~~~~----------~~i-------------~~~~~~i~~~~~~~~~~-~l~s~-~~d~~v~vw~~~~~~~~~~~~  206 (216)
                      +.++....+          ..+             ..-...+.++++++|++ +|+++ ..++.|.++|..+++....++
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence            877765421          223             22234678999999997 66654 558999999999998877654


Q ss_pred             C
Q 043942          207 S  207 (216)
Q Consensus       207 ~  207 (216)
                      .
T Consensus       372 ~  372 (386)
T 3sjl_D          372 Q  372 (386)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.13  E-value=4.1e-08  Score=71.86  Aligned_cols=153  Identities=10%  Similarity=0.041  Sum_probs=99.3

Q ss_pred             eeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG   84 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~   84 (216)
                      .+..+..+........|+|+|+ ++++...++.|..|+..                           +. ...+..+...
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~---------------------------g~-~~~~~~~~~~   87 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED---------------------------GT-VDVLLDATAF   87 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT---------------------------SC-EEEEEESCSC
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC---------------------------CC-EEEEeCCCCc
Confidence            3455555666778999999998 55666655666666541                           21 1233335566


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE----ecc-
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT----GCV-  159 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-  159 (216)
                      +..++++++|+++++...++.|..||.. ++..........           .....+..++++|+|++.++    +.. 
T Consensus        88 ~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~-----------~~~~~~~~i~~d~dG~l~~td~~~g~~~  155 (305)
T 3dr2_A           88 TNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG-----------KRLNSPNDLIVARDGAIWFTDPPFGLRK  155 (305)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETT-----------EECSCCCCEEECTTSCEEEECCSGGGSC
T ss_pred             cceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCC-----------CccCCCCCEEECCCCCEEEeCcCCCccc
Confidence            8899999999977777677899999986 553222211000           02234667889999988775    321 


Q ss_pred             ------------cCeE-------------EeeeCCEEEEEEecCCCeEEEEeCC------CcEEEEEcccc
Q 043942          160 ------------DGKV-------------DGHIDAIQSLSVSAIRESLVSVSVD------GTARVFEIAEF  199 (216)
Q Consensus       160 ------------~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d------~~v~vw~~~~~  199 (216)
                                  .+.+             . .......++|+|+++.|+.+...      +.|++|++...
T Consensus       156 ~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          156 PSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             GGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             cccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence                        1223             2 33456789999999977776554      78999998754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.12  E-value=4.1e-11  Score=90.32  Aligned_cols=158  Identities=9%  Similarity=0.037  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCcceeeeeeccCC-Cee-E
Q 043942           25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAYLNMFSGHGS-GLT-C   87 (216)
Q Consensus        25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~~~~~~~~~-~v~-~   87 (216)
                      ++..+++++.|+.|+.||..+++.+.++.. ....               .++.|+.||.++++.+..+..+.. .+. +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            577899999999999999999999887765 2111               688999999998887666543321 111 1


Q ss_pred             EEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeEEee-
Q 043942           88 GDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGH-  166 (216)
Q Consensus        88 ~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~-  166 (216)
                      ..+. ++..+++++.|+.++.||.++|+.+..+..               +.    ...++|++..+++++.++.+... 
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---------------~~----~~~~~p~~~~v~~~~~dg~v~a~d  146 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---------------AF----ADSLSPSTSLLYLGRTEYTITMYD  146 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC-----------------------------------------EEEEEEEEEEECCC
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---------------CC----cccccccCCEEEEEecCCEEEEEE
Confidence            1111 345677888899999999999998776653               11    12345577788888877776100 


Q ss_pred             ---eC--------CEEEEEEecCC---CeEEEEeCCCcEEEEEccccccee
Q 043942          167 ---ID--------AIQSLSVSAIR---ESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       167 ---~~--------~i~~~~~~~~~---~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                         ..        .....+++++.   ..+++++.||.++.||..+++..-
T Consensus       147 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W  197 (369)
T 2hz6_A          147 TKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW  197 (369)
T ss_dssp             SSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred             CCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence               00        11112223322   567778889999999998887653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.12  E-value=1.4e-07  Score=72.08  Aligned_cols=174  Identities=10%  Similarity=0.055  Sum_probs=106.8

Q ss_pred             EEEccCCCEEEEEcCCC--cEEEEECCCCceEEEE----eCCCC---cc-------------cCcEEEEEECCCcceeee
Q 043942           20 LAFSTDGQLLASGGFHG--LVQNRDTSSRNLQCTV----EGPRG---GI-------------EDSTVWMWNADRGAYLNM   77 (216)
Q Consensus        20 ~~~s~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~----~~~~~---~~-------------~~~~v~i~d~~~~~~~~~   77 (216)
                      ++|+++++.|++++.++  .|.+++...+.....+    .....   .+             .++.|+.||..++.....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            89999999999888766  7888888766554444    10000   11             346788888876643222


Q ss_pred             ----eeccCCCe-e-EEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeeccc-ccccccceEEEeeeecCeEEEEeCC
Q 043942           78 ----FSGHGSGL-T-CGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSS-LEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        78 ----~~~~~~~v-~-~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                          ..++...- . .++|+|+ +.++++-..++.|+.|+....  ...+.... ..-.... ......-.....++++|
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg-~~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDG-LREEALFAQPNGMTVDE  332 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCE-EGGGCBCSSEEEEEECT
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCC-cccccEeCCCeEEEEeC
Confidence                12222222 3 9999995 666677778899999997743  22222110 0000000 00000123478899999


Q ss_pred             CCcEEEEec-ccCeE-------------Eee---------------eCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          150 TSKYLVTGC-VDGKV-------------DGH---------------IDAIQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       150 ~~~~l~~~~-~~~~i-------------~~~---------------~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                      +|+++++-. .++.|             .++               -.....++++++|.++++-..++.|+.+++
T Consensus       333 dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          333 DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            999777766 55555             121               245889999999888888888888888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.12  E-value=1.9e-07  Score=67.62  Aligned_cols=166  Identities=10%  Similarity=0.031  Sum_probs=112.9

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC--Ccc----------------cCcEEEEEECCCccee
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR--GGI----------------EDSTVWMWNADRGAYL   75 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~~----------------~~~~v~i~d~~~~~~~   75 (216)
                      ...+.+++++++|+++++...++.|..||.. ++.. .+..+.  ...                .++.|..+|.. ++..
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            3578899999999988887778889999987 5442 232211  111                35677777776 4433


Q ss_pred             e-eeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           76 N-MFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        76 ~-~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      . .+......+..+++.++++.+++...++.|..+|. +++... +....             ....+..+++++++++.
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~-------------~~~~~~~i~~d~~g~l~  202 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPT-------------NAAAPVGITSGNDGALW  202 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS-------------TTCCEEEEEECTTSSEE
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCC-------------CCCCcceEEECCCCCEE
Confidence            2 22223456889999999997777777889999998 455433 22100             23457888999988877


Q ss_pred             EEecccCeE---------E-----eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          155 VTGCVDGKV---------D-----GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       155 ~~~~~~~~i---------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      ++....+.+         .     .....+.+++++++|++.++...++.|..|+..
T Consensus       203 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          203 FVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            666555544         1     123467899999999977776667899999873

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.11  E-value=1.2e-09  Score=88.86  Aligned_cols=166  Identities=5%  Similarity=-0.083  Sum_probs=104.3

Q ss_pred             EEEEEccCCCEEEEEcCCCc-------------EEEEECCCCce--EEEEeC--CCCcc----------------cC---
Q 043942           18 SSLAFSTDGQLLASGGFHGL-------------VQNRDTSSRNL--QCTVEG--PRGGI----------------ED---   61 (216)
Q Consensus        18 ~~~~~s~~~~~l~s~~~d~~-------------v~vwd~~~~~~--~~~~~~--~~~~~----------------~~---   61 (216)
                      ..++|+|||+.|+.++.|..             |++|++.+++.  ...+..  +....                .+   
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            67899999999999988776             99999988762  222222  11111                22   


Q ss_pred             -cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec---CCCeEEEEeCCCCce---eEEeecccccccccceEE
Q 043942           62 -STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS---DNATLSIWNPKGGEN---FHAIRRSSLEFSLNYWMI  134 (216)
Q Consensus        62 -~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~---~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~  134 (216)
                       ..|+++|..++. ...+..+...+....+ +++++++.+.   .++.|.+||+.++..   ...+..            
T Consensus       251 ~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~------------  316 (695)
T 2bkl_A          251 ENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE------------  316 (695)
T ss_dssp             EEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC------------
T ss_pred             ceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC------------
Confidence             267777665554 3444455556666666 5666444444   358899999987653   233321            


Q ss_pred             Eeee-ecCeEEEEeCCCCcEEEEecccCeE---------------Eee-eCCEEEEEEecCCCeEEE----EeCCCcEEE
Q 043942          135 CTSL-YDGVTCLSWPGTSKYLVTGCVDGKV---------------DGH-IDAIQSLSVSAIRESLVS----VSVDGTARV  193 (216)
Q Consensus       135 ~~~~-~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~-~~~i~~~~~~~~~~~l~s----~~~d~~v~v  193 (216)
                         + ...+..++|+ ++.++++...++..               ..+ ...+..+.++|+++.++.    ....+.|++
T Consensus       317 ---~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~  392 (695)
T 2bkl_A          317 ---DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK  392 (695)
T ss_dssp             ---CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred             ---CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence               2 3346667777 56667777666654               111 344667778898876662    233578999


Q ss_pred             EEcccccc
Q 043942          194 FEIAEFRR  201 (216)
Q Consensus       194 w~~~~~~~  201 (216)
                      ||+.+++.
T Consensus       393 ~d~~~g~~  400 (695)
T 2bkl_A          393 TSVSTGKS  400 (695)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCcE
Confidence            99987653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.10  E-value=2.2e-08  Score=74.58  Aligned_cols=168  Identities=11%  Similarity=0.001  Sum_probs=101.6

Q ss_pred             cccceEEEEEccCCCEEEEEcC-----CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942           13 HKDSFSSLAFSTDGQLLASGGF-----HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTC   87 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~   87 (216)
                      |...+.+++++++++++++-..     +..|.+||+.+++.+..+..+.               .     ...+...+..
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~---------------~-----~~~~~~~~~~  124 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP---------------P-----ITLSNSFVND  124 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT---------------T-----TSCTTCCCCE
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh---------------h-----hcccccccce
Confidence            4567888999988876555432     3556666665444333322110               0     0012345689


Q ss_pred             EEEcCCC-cEEEEec---CCCeEEEEeCCCCceeEEeecc-cccc-----cccceEEE--ee------eecCeEEEEeCC
Q 043942           88 GDFTTDG-KTICTGS---DNATLSIWNPKGGENFHAIRRS-SLEF-----SLNYWMIC--TS------LYDGVTCLSWPG  149 (216)
Q Consensus        88 ~~~~~~~-~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~-~~~~-----~~~~~~~~--~~------~~~~v~~~~~~~  149 (216)
                      +++++++ ..+++-.   .++.|.+||+.+++....+... ....     ........  ..      ....+..++|+|
T Consensus       125 v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~  204 (343)
T 2qe8_A          125 LAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA  204 (343)
T ss_dssp             EEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT
T ss_pred             EEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc
Confidence            9999864 4445554   6789999999988766554321 1100     01110000  00      113468899999


Q ss_pred             CCcEEEEecccC-eE------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          150 TSKYLVTGCVDG-KV------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       150 ~~~~l~~~~~~~-~i------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +++.|+.+...+ .+                        .++......++++++|+++++...++.|.+||.++++
T Consensus       205 dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          205 ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            999888776554 22                        1233355679999999999998889999999984443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.08  E-value=1.4e-08  Score=82.60  Aligned_cols=169  Identities=14%  Similarity=0.119  Sum_probs=99.4

Q ss_pred             cccceEEEEEccCCCEEEEE-----cCCCcEEEEECCCCceEEE-EeCC-CCc--------c----cC------------
Q 043942           13 HKDSFSSLAFSTDGQLLASG-----GFHGLVQNRDTSSRNLQCT-VEGP-RGG--------I----ED------------   61 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~-----~~d~~v~vwd~~~~~~~~~-~~~~-~~~--------~----~~------------   61 (216)
                      |...+..++|||||++||-+     +....|++||+.+++.+.. +... ...        +    .+            
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~  206 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTD  206 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CC
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCC
Confidence            44568899999999998843     2335799999999975542 2211 011        1    22            


Q ss_pred             -cEEEEEECCCcce----eeeeec-cCCCeeEEEEcCCCcEEEEec----CCCeEEEEeCCCCc-eeEEeeccccccccc
Q 043942           62 -STVWMWNADRGAY----LNMFSG-HGSGLTCGDFTTDGKTICTGS----DNATLSIWNPKGGE-NFHAIRRSSLEFSLN  130 (216)
Q Consensus        62 -~~v~i~d~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~t~~----~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~  130 (216)
                       ..|++|++.++..    +..... |......+.|+|||++|+...    .+..++++|+.++. ....+..        
T Consensus       207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~--------  278 (693)
T 3iuj_A          207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG--------  278 (693)
T ss_dssp             CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC--------
T ss_pred             CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC--------
Confidence             3488888876542    222333 445578899999999886433    23589999998763 2333332        


Q ss_pred             ceEEEeeeecCeEEEEeCCCCcEE-EEeccc---CeE----------------EeeeCCEEEEEEecCCCeEEEEeC-CC
Q 043942          131 YWMICTSLYDGVTCLSWPGTSKYL-VTGCVD---GKV----------------DGHIDAIQSLSVSAIRESLVSVSV-DG  189 (216)
Q Consensus       131 ~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~---~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~-d~  189 (216)
                             +....... +++++..| +....+   +.+                ..|...+.  .|++++++|+.... ++
T Consensus       279 -------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g  348 (693)
T 3iuj_A          279 -------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA  348 (693)
T ss_dssp             -------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT
T ss_pred             -------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC
Confidence                   12222222 22322222 222211   111                34444444  89999998876665 44


Q ss_pred             --cEEEEEcccc
Q 043942          190 --TARVFEIAEF  199 (216)
Q Consensus       190 --~v~vw~~~~~  199 (216)
                        .|++|++...
T Consensus       349 ~~~l~~~d~~g~  360 (693)
T 3iuj_A          349 TARVEQFDYEGK  360 (693)
T ss_dssp             EEEEEEECTTSC
T ss_pred             eeEEEEEECCCC
Confidence              6888888643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.06  E-value=6.9e-08  Score=70.67  Aligned_cols=166  Identities=10%  Similarity=0.041  Sum_probs=98.4

Q ss_pred             EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-------Ccc---c-----------------
Q 043942            8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-------GGI---E-----------------   60 (216)
Q Consensus         8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------~~~---~-----------------   60 (216)
                      ..+..+...+..++++++|+++++...++.|.+|+.. ++.........       ..+   .                 
T Consensus        79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~  157 (305)
T 3dr2_A           79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPS  157 (305)
T ss_dssp             EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGG
T ss_pred             EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccc
Confidence            4455566778999999999977776667889999976 44322111000       001   1                 


Q ss_pred             ----------CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC------CeEEEEeCCCCceeEEeeccc
Q 043942           61 ----------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN------ATLSIWNPKGGENFHAIRRSS  124 (216)
Q Consensus        61 ----------~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~  124 (216)
                                .+.|+.+|..+++.....  .......++|+|+++.|+.+...      +.|.+||+..+. +.....  
T Consensus       158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~--  232 (305)
T 3dr2_A          158 QGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRH--  232 (305)
T ss_dssp             GSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEE--
T ss_pred             cccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeE--
Confidence                      245666666555443322  33456789999999987776654      789999987654 211110  


Q ss_pred             ccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------EeeeCCEEEEEEecCCCeEEEEeCCC
Q 043942          125 LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------DGHIDAIQSLSVSAIRESLVSVSVDG  189 (216)
Q Consensus       125 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------~~~~~~i~~~~~~~~~~~l~s~~~d~  189 (216)
                               ...........++++++|++.+ ++.++..           ......+.+++|+|+++.|..++.++
T Consensus       233 ---------~~~~~~~~pdgi~~d~~G~lwv-~~~~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          233 ---------FASVPDGLPDGFCVDRGGWLWS-SSGTGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             ---------EECCSSSCCCSEEECTTSCEEE-CCSSEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred             ---------EEECCCCCCCeEEECCCCCEEE-ecCCcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence                     0000122344567788887443 3333322           11123578899999988887776654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.03  E-value=2.3e-08  Score=81.98  Aligned_cols=166  Identities=14%  Similarity=0.016  Sum_probs=103.2

Q ss_pred             eEEEEEccCCCEEEEEcCCCc--------------EEEEECCCCce--EEEEeCCCCc--c----------------c--
Q 043942           17 FSSLAFSTDGQLLASGGFHGL--------------VQNRDTSSRNL--QCTVEGPRGG--I----------------E--   60 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d~~--------------v~vwd~~~~~~--~~~~~~~~~~--~----------------~--   60 (216)
                      +..++|+|| +.|+.++.++.              |++|++.++..  ...+......  .                .  
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            357899999 99988877654              88999977652  2222221110  0                1  


Q ss_pred             ---CcEEEEEECCCc--ceeeeeeccCCCeeEEEEcCCCcEEEEecC----CCeEEEEeCCCC--ceeEEeecccccccc
Q 043942           61 ---DSTVWMWNADRG--AYLNMFSGHGSGLTCGDFTTDGKTICTGSD----NATLSIWNPKGG--ENFHAIRRSSLEFSL  129 (216)
Q Consensus        61 ---~~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~----d~~i~~wd~~~~--~~~~~~~~~~~~~~~  129 (216)
                         ...|++||+.++  +....+..+...+.... +|+++.|+..+.    ++.|.+||+.++  .....+..       
T Consensus       290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-------  361 (741)
T 1yr2_A          290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-------  361 (741)
T ss_dssp             TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-------
T ss_pred             CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC-------
Confidence               348999998876  31445555555555543 488888877765    455999999875  22333322       


Q ss_pred             cceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------Ee-eeCCEEEEEEecCCCeEEE----EeCCC
Q 043942          130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DG-HIDAIQSLSVSAIRESLVS----VSVDG  189 (216)
Q Consensus       130 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~-~~~~i~~~~~~~~~~~l~s----~~~d~  189 (216)
                              +...+..+.++ ++.++++...++..               .. ....+..+.++|+++.|+.    ....+
T Consensus       362 --------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  432 (741)
T 1yr2_A          362 --------SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPA  432 (741)
T ss_dssp             --------CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred             --------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence                    23334556665 44556666555543               11 2345788899999876652    23458


Q ss_pred             cEEEEEccccc
Q 043942          190 TARVFEIAEFR  200 (216)
Q Consensus       190 ~v~vw~~~~~~  200 (216)
                      +|++||+.+++
T Consensus       433 ~i~~~d~~tg~  443 (741)
T 1yr2_A          433 TVLALDPATAK  443 (741)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCc
Confidence            89999998765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.02  E-value=5e-07  Score=65.83  Aligned_cols=159  Identities=10%  Similarity=0.035  Sum_probs=93.8

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----c------cCcEEE-----------------
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----I------EDSTVW-----------------   65 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----~------~~~~v~-----------------   65 (216)
                      ....+.+++++++|+++++.  +..|.+||..+++...........    .      .+|.+.                 
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~  129 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ  129 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence            45678999999999965554  567999999887654333221110    0      223222                 


Q ss_pred             --EEECCC-cceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeC--CCCcee--EEeecccccccccceEEEee
Q 043942           66 --MWNADR-GAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNP--KGGENF--HAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        66 --i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~  137 (216)
                        +|.+.. ++. ..+.........++|+|+++.+ ++.+.++.|..||+  .++...  ..+..            ...
T Consensus       130 ~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~------------~~~  196 (297)
T 3g4e_A          130 GALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK------------LEK  196 (297)
T ss_dssp             EEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE------------CCG
T ss_pred             cEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE------------CCC
Confidence              222221 222 1222233456789999999866 45566889999987  455432  11110            000


Q ss_pred             eecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEe-cCCCeEEEEe
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVS-AIRESLVSVS  186 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~-~~~~~l~s~~  186 (216)
                      .......++++++|++.++....+.|              ..+...+++++|. |+++.|..++
T Consensus       197 ~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          197 EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            22456778889988766665545444              2233578999998 8887665443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.01  E-value=4.6e-07  Score=63.57  Aligned_cols=113  Identities=14%  Similarity=0.124  Sum_probs=85.2

Q ss_pred             ceeEEeecccc--ceEEEEEccCCCEEEEEcCC--CcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942            5 DWASEILGHKD--SFSSLAFSTDGQLLASGGFH--GLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV   64 (216)
Q Consensus         5 ~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v   64 (216)
                      +.++++ .|..  ....+.|++ +.++.+.+.+  ..|+++|+.+++.+..+..+....                .++.+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v   87 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence            455666 4654  466899987 5666676665  489999999999999887655421                78999


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .+||..+.+.+.++.... .-..++  +++..|+.+..++.|.++|..+.+....+..
T Consensus        88 ~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           88 FVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             EEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            999999999998887433 223444  5677777667789999999999988877765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.01  E-value=6.3e-08  Score=72.68  Aligned_cols=52  Identities=19%  Similarity=0.024  Sum_probs=39.6

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCC
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGP   55 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~   55 (216)
                      ++++.+.++.....+  .+.++||+++++.+.          .++.|.+||..+++.+.++..+
T Consensus        54 ~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~  115 (368)
T 1mda_H           54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP  115 (368)
T ss_dssp             TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred             CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            467788888765556  799999999888876          3567888888888877777543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.98  E-value=2.8e-07  Score=65.30  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=84.3

Q ss_pred             ceeEEeeccccc--eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----c------------cCcEEEE
Q 043942            5 DWASEILGHKDS--FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----I------------EDSTVWM   66 (216)
Q Consensus         5 ~~~~~~~~h~~~--v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----~------------~~~~v~i   66 (216)
                      +.++++ .|...  ...+.|+. +.++.+.+.+|.|+++|+.+++.+..+ .+...    +            .++.+.+
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred             EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEE
Confidence            455566 35433  46888874 677888888899999999999988887 43321    1            7899999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      ||..+.+.+.++... ..-..++  ++++.|+.+..++.|.++|..+.+....+..
T Consensus       121 ~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          121 WSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             EETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            999999999888743 2223444  5677777777799999999999988887765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.95  E-value=1.6e-07  Score=74.57  Aligned_cols=122  Identities=11%  Similarity=0.181  Sum_probs=86.3

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC--CCceeEEeecccccccccceEEEeee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK--GGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      ++.|.++|..+++.+..+.. ...+..+.|+||++++++++.|+.|.+||+.  +++.+..+..                
T Consensus       176 ~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----------------  238 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----------------  238 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----------------
T ss_pred             CCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----------------
Confidence            44455555555555555542 3356789999999999999999999999996  7777776653                


Q ss_pred             ecCeEEEEeC----CCCcEEEEeccc-CeE--------------E--e--------e-eCCEEEEEEecCCCe-EEEEeC
Q 043942          139 YDGVTCLSWP----GTSKYLVTGCVD-GKV--------------D--G--------H-IDAIQSLSVSAIRES-LVSVSV  187 (216)
Q Consensus       139 ~~~v~~~~~~----~~~~~l~~~~~~-~~i--------------~--~--------~-~~~i~~~~~~~~~~~-l~s~~~  187 (216)
                      ......++|+    |+|+++++++.. +.+              .  +        | ...+..+..++++.. +++...
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            3346789999    699998887664 444              0  1        1 125778888887654 455566


Q ss_pred             CCcEEEEEcccc
Q 043942          188 DGTARVFEIAEF  199 (216)
Q Consensus       188 d~~v~vw~~~~~  199 (216)
                      +|.|.++|+.+.
T Consensus       319 ~g~v~~vd~~~~  330 (567)
T 1qks_A          319 TGKILLVDYTDL  330 (567)
T ss_dssp             TTEEEEEETTCS
T ss_pred             CCeEEEEecCCC
Confidence            799999998764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.95  E-value=1.6e-06  Score=66.17  Aligned_cols=162  Identities=12%  Similarity=0.053  Sum_probs=111.7

Q ss_pred             cCCCEEE-EEcCCCcEEEEECCCC----ceEEEEe--------C---------CCCcc-----------cCcEEEEEECC
Q 043942           24 TDGQLLA-SGGFHGLVQNRDTSSR----NLQCTVE--------G---------PRGGI-----------EDSTVWMWNAD   70 (216)
Q Consensus        24 ~~~~~l~-s~~~d~~v~vwd~~~~----~~~~~~~--------~---------~~~~~-----------~~~~v~i~d~~   70 (216)
                      +++++|+ ++..++.|.++|+.+.    +..+.++        +         ...++           ..+.+.++|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence            7777655 5667889999999754    5556662        0         01112           23789999999


Q ss_pred             CcceeeeeeccC---CCeeEEEEcCCCcEEEEec-------------------CCCeEEEEeCCCCceeEEeeccccccc
Q 043942           71 RGAYLNMFSGHG---SGLTCGDFTTDGKTICTGS-------------------DNATLSIWNPKGGENFHAIRRSSLEFS  128 (216)
Q Consensus        71 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~t~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~  128 (216)
                      +.+.+.++....   ..-..+.|+|+++.+++..                   .+.+|.+||+.+++.+.++....    
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~----  248 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE----  248 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT----
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC----
Confidence            999988886322   2234688899999888874                   37899999999988777776421    


Q ss_pred             ccceEEEeeeecCeEEEEe--CCCCcEEEEecc-----c-CeEE------------------ee----------------
Q 043942          129 LNYWMICTSLYDGVTCLSW--PGTSKYLVTGCV-----D-GKVD------------------GH----------------  166 (216)
Q Consensus       129 ~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~-----~-~~i~------------------~~----------------  166 (216)
                               .......+.|  +|++++.++++.     . +.+.                  ..                
T Consensus       249 ---------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          249 ---------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             ---------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             ---------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence                     1123344544  899988777665     2 2220                  00                


Q ss_pred             eCCEEEEEEecCCCeEEEEeC-CCcEEEEEccc
Q 043942          167 IDAIQSLSVSAIRESLVSVSV-DGTARVFEIAE  198 (216)
Q Consensus       167 ~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~  198 (216)
                      ......+.+||||++|.++.. .+.|.+||+..
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            234688999999999887665 68999999863

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.95  E-value=2.3e-06  Score=64.53  Aligned_cols=110  Identities=15%  Similarity=0.056  Sum_probs=77.2

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCC----------CCcc--
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGP----------RGGI--   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~----------~~~~--   59 (216)
                      .+++.+.++.....+  .++++|||++++.+.          .++.|.+||..+.+.+.++...          ....  
T Consensus        55 ~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~  132 (373)
T 2mad_H           55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence            456677777654444  899999999988886          3678999999998888877543          0011  


Q ss_pred             ------------c-CcEEEEEECCCcceeee-eeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEE
Q 043942           60 ------------E-DSTVWMWNADRGAYLNM-FSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHA  119 (216)
Q Consensus        60 ------------~-~~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~  119 (216)
                                  . ++.|.++| .+++.+.. +.. ..   ++.+.|++ +.+++.+.|+.+.++|. +++....
T Consensus       133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~  201 (373)
T 2mad_H          133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA  201 (373)
T ss_pred             CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence                        2 47799999 88887766 542 22   24455554 45567778999999999 7776633

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.92  E-value=2.1e-06  Score=63.42  Aligned_cols=157  Identities=15%  Similarity=0.018  Sum_probs=92.7

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC----cc------cC----------------cEEEE
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----GI------ED----------------STVWM   66 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----~~------~~----------------~~v~i   66 (216)
                      ....+.+++|+++|+++++. .+ .|.+||..+++..........    .+      .+                +.|..
T Consensus        88 ~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~  165 (326)
T 2ghs_A           88 LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  165 (326)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence            34678999999999877765 33 499999988765433221110    00      11                34444


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEE-ecCCCeEEEEeCC--CC-cee--EEeecccccccccceEEEeeeec
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICT-GSDNATLSIWNPK--GG-ENF--HAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t-~~~d~~i~~wd~~--~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      ++  +++.. .+..+......++|+|+++.++. .+.++.|.+||+.  ++ ...  ..+....            ....
T Consensus       166 ~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~------------~~~~  230 (326)
T 2ghs_A          166 VA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST------------GIKG  230 (326)
T ss_dssp             EE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT------------TSSS
T ss_pred             Ee--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC------------CCCC
Confidence            55  33322 22223345678999999987654 4567899999986  55 321  1111000            0123


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEe-cCCCeEEEEe
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVS-AIRESLVSVS  186 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~-~~~~~l~s~~  186 (216)
                      ....++++++|.+.++...++.+             ..+...+++++|+ |+++.|+.++
T Consensus       231 ~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          231 GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            35678888888766655444444             2233468999998 8887665443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.88  E-value=2.2e-07  Score=69.90  Aligned_cols=188  Identities=13%  Similarity=0.051  Sum_probs=115.7

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCCC--------Cc--c--
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGPR--------GG--I--   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~--------~~--~--   59 (216)
                      .+++.+.++.....+ . ++++|||++++.++          .++.|.+||..+++.+.++..+.        .+  +  
T Consensus        67 ~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~  144 (386)
T 3sjl_D           67 EAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  144 (386)
T ss_dssp             TTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             CCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence            467777777755555 4 99999999887765          36789999999999999886432        11  1  


Q ss_pred             -------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-CceeEEeecccc
Q 043942           60 -------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-GENFHAIRRSSL  125 (216)
Q Consensus        60 -------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~  125 (216)
                                   .++.|.++|+.+++.+.++.-. + . ...+....+.+++.+.||++.+.++.+ ++...... ..+
T Consensus       145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~  220 (386)
T 3sjl_D          145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVF  220 (386)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCC
T ss_pred             cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-cee
Confidence                         2578999999999888887532 2 1 223333456677778899999999876 55432111 111


Q ss_pred             cccccceEEEeeeecCeE-EEEe-CCCCcEEEEecccCeE----------------E----------eeeCCEEEEEEec
Q 043942          126 EFSLNYWMICTSLYDGVT-CLSW-PGTSKYLVTGCVDGKV----------------D----------GHIDAIQSLSVSA  177 (216)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~-~~~~-~~~~~~l~~~~~~~~i----------------~----------~~~~~i~~~~~~~  177 (216)
                      ..          ...++. ...| .++|++++... +|.+                .          ........++++|
T Consensus       221 ~~----------~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~  289 (386)
T 3sjl_D          221 HP----------EDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR  289 (386)
T ss_dssp             SC----------TTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred             cc----------ccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence            00          001111 1233 34555443222 3443                0          0112233477788


Q ss_pred             CCCeEEEEeC----------CCcEEEEEcccccceeecC
Q 043942          178 IRESLVSVSV----------DGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       178 ~~~~l~s~~~----------d~~v~vw~~~~~~~~~~~~  206 (216)
                      +++.++....          .+.|.+.|+++.+.+..++
T Consensus       290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~  328 (386)
T 3sjl_D          290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE  328 (386)
T ss_dssp             TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence            8887776532          2579999999988766543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.86  E-value=8.5e-06  Score=60.18  Aligned_cols=167  Identities=8%  Similarity=-0.025  Sum_probs=103.4

Q ss_pred             ceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----------c---cCcEEEEEECCCcceeeeeec-
Q 043942           16 SFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----------I---EDSTVWMWNADRGAYLNMFSG-   80 (216)
Q Consensus        16 ~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----------~---~~~~v~i~d~~~~~~~~~~~~-   80 (216)
                      ...+..|+|++ .++++...++.|..||..+++.. .+......          .   .+..|.+||..+++....... 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~  128 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELE  128 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSS
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeCC
Confidence            45688999975 55666667889999999877543 22221110          0   334588889887765332211 


Q ss_pred             ---cCCCeeEEEEcCCCcEEEEecC------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942           81 ---HGSGLTCGDFTTDGKTICTGSD------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS  151 (216)
Q Consensus        81 ---~~~~v~~~~~~~~~~~l~t~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  151 (216)
                         ....+..++++|+|+++++...      .+.|..+|  +++... +..               .......++|+|++
T Consensus       129 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~---------------~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          129 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA---------------DISIPNSICFSPDG  190 (326)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE---------------EESSEEEEEECTTS
T ss_pred             CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC---------------CCcccCCeEEcCCC
Confidence               1235789999999997765532      24566666  444322 221               33456788999999


Q ss_pred             cEEEEe-cccCeE---E-----e--------------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          152 KYLVTG-CVDGKV---D-----G--------------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       152 ~~l~~~-~~~~~i---~-----~--------------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      +.++.+ +.++.+   .     +              ....+..++++++|++.++...++.|.+|+. +++..
T Consensus       191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~  263 (326)
T 2ghs_A          191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHI  263 (326)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEE
T ss_pred             CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEE
Confidence            866544 333444   1     0              0123567888999987777766788999997 44443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.80  E-value=1.8e-09  Score=81.31  Aligned_cols=114  Identities=8%  Similarity=0.063  Sum_probs=62.3

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC------Cc-------c----cCcEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR------GG-------I----EDSTV   64 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~------~~-------~----~~~~v   64 (216)
                      ++|+.+.+++.  +.+.+..+..++..+++++.|+.|+.||..+++.+..+..+.      .+       +    .++.+
T Consensus        27 ~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v  104 (369)
T 2hz6_A           27 RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIW  104 (369)
T ss_dssp             TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEE
T ss_pred             CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEE
Confidence            57888777775  455555566677788888899999999999887765543221      11       0    57889


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEee
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIR  121 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~  121 (216)
                      +.||.++|+.+..+..+.    ...++|++..+++++.|+.|+.||.++|+.+..+.
T Consensus       105 ~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A          105 YVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             EEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             EEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            999999999887776543    23456788899999999999999999998765554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.78  E-value=6.6e-06  Score=58.31  Aligned_cols=122  Identities=11%  Similarity=0.065  Sum_probs=86.7

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEE-EcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLAS-GGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWM   66 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i   66 (216)
                      +++|+.++++.-. .........++++.|.. .-.++.+.+||..+.+.+.++.....+.             ..+.|.+
T Consensus        72 ~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~  150 (262)
T 3nol_A           72 IESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRF  150 (262)
T ss_dssp             TTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEE
T ss_pred             CCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEE
Confidence            3577777777643 33334334444544444 4468899999999999999998654433             4567999


Q ss_pred             EECCCcceeeeeecc--C---CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc
Q 043942           67 WNADRGAYLNMFSGH--G---SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS  124 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~  124 (216)
                      +|..+.+.+..+.-.  .   ..++.+.|. +|+..+..-.+..|.+.|.++++....+....
T Consensus       151 iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~  212 (262)
T 3nol_A          151 LDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG  212 (262)
T ss_dssp             ECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTT
T ss_pred             EcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCc
Confidence            999998887776532  1   335567876 77766666678899999999999998887643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.73  E-value=2.1e-06  Score=67.71  Aligned_cols=158  Identities=13%  Similarity=0.037  Sum_probs=105.2

Q ss_pred             cCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcc-------------------------------------cCcEEE
Q 043942           24 TDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGI-------------------------------------EDSTVW   65 (216)
Q Consensus        24 ~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~-------------------------------------~~~~v~   65 (216)
                      +||+++..... +..|.+.|+.+.+..+.+..+....                                     .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            37877776654 5679999999998877554322110                                     356889


Q ss_pred             EEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC---------------eEEEE---------------------
Q 043942           66 MWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA---------------TLSIW---------------------  109 (216)
Q Consensus        66 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~---------------~i~~w---------------------  109 (216)
                      ++|..+.+...++.-- +....++++|+|+++++++.+.               .+.+.                     
T Consensus       179 vID~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999988887776632 2457788999999998887553               23443                     


Q ss_pred             --eCCC--Cce-eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cCeE-----E--------------
Q 043942          110 --NPKG--GEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV-----D--------------  164 (216)
Q Consensus       110 --d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i-----~--------------  164 (216)
                        |.++  ++. +..++                .....-++.++|||+++++++. +..+     .              
T Consensus       258 VID~~~~~~~~~~~~Ip----------------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIP----------------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             EEECSGGGCCSSEEEEE----------------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             EEeCcccCCceeEEEEe----------------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence              3333  211 12221                2345667899999998877654 3444     0              


Q ss_pred             ------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          165 ------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       165 ------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                            .-......++|+|+|...++.-.|+.|.+||+..
T Consensus       322 ~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          322 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence                  1124678999999994444566699999999987

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.72  E-value=4.8e-06  Score=65.68  Aligned_cols=156  Identities=9%  Similarity=0.009  Sum_probs=113.0

Q ss_pred             EEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------------------------------------
Q 043942           29 LASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------------------------------------   59 (216)
Q Consensus        29 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------------------------------------   59 (216)
                      |.||+..|.++|+-+.+++.++.+..-....                                                 
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            7788999999999999999988886422211                                                 


Q ss_pred             ------------cCcEEEEEECCCcceeeeeecc-CCCeeEEEE-c-CCCcEEEEec------------------CCCeE
Q 043942           60 ------------EDSTVWMWNADRGAYLNMFSGH-GSGLTCGDF-T-TDGKTICTGS------------------DNATL  106 (216)
Q Consensus        60 ------------~~~~v~i~d~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~t~~------------------~d~~i  106 (216)
                                  .+..|.+.|+.+.+....+.-. ......+++ . |+++++++++                  .++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence                        5677889999988877744422 245788888 5 8999998884                  34679


Q ss_pred             EEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe---------------E--------
Q 043942          107 SIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK---------------V--------  163 (216)
Q Consensus       107 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~---------------i--------  163 (216)
                      .++|..+.+...++..                ......++++|+|+++++.+.+..               +        
T Consensus       178 tvID~~t~~v~~qI~V----------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~  241 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLV----------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI  241 (595)
T ss_dssp             EEEETTTTEEEEEEEE----------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred             EEEECCCCeEEEEEEe----------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence            9999999888777763                123455667888888877775531               1        


Q ss_pred             --------------------Ee-----------eeCCEEEEEEecCCCeEEEEe-CCCcEEEEEccccc
Q 043942          164 --------------------DG-----------HIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEFR  200 (216)
Q Consensus       164 --------------------~~-----------~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~~  200 (216)
                                          ..           -.....++.++|||++++.++ .+.+|.++|+.+.+
T Consensus       242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~  310 (595)
T 1fwx_A          242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  310 (595)
T ss_dssp             HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             eEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence                                11           112345688999999887665 47999999999653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.72  E-value=1.3e-06  Score=71.23  Aligned_cols=164  Identities=10%  Similarity=0.025  Sum_probs=100.8

Q ss_pred             EEEEEccCCCEEEEEcCCCc-------------EEEEECCCCce--EEEEeCCC---Ccc--------------------
Q 043942           18 SSLAFSTDGQLLASGGFHGL-------------VQNRDTSSRNL--QCTVEGPR---GGI--------------------   59 (216)
Q Consensus        18 ~~~~~s~~~~~l~s~~~d~~-------------v~vwd~~~~~~--~~~~~~~~---~~~--------------------   59 (216)
                      ..++|+ ||+.|+.++.+..             |++|++.+...  ...+....   ...                    
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            578999 9999998887743             99999987642  22222221   100                    


Q ss_pred             cCcEEEEEECCCcc-eeeeeeccCCCeeEEEEcCCCcEEE-EecCC---CeEEEEeCCCCce--eEEeecccccccccce
Q 043942           60 EDSTVWMWNADRGA-YLNMFSGHGSGLTCGDFTTDGKTIC-TGSDN---ATLSIWNPKGGEN--FHAIRRSSLEFSLNYW  132 (216)
Q Consensus        60 ~~~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~-t~~~d---~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~  132 (216)
                      ..+.++++|+.++. ....+..+....... +++++..|+ ....+   +.|..+|+.++..  ...+..          
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~----------  325 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP----------  325 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC----------
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec----------
Confidence            33588999987663 344555565555554 566665554 44433   6799999987654  233333          


Q ss_pred             EEEeeeecCeEEEEeCCCCcEEEEecccC---eE--------------EeeeCCEEEEEEecCCCeEEEEeCC----CcE
Q 043942          133 MICTSLYDGVTCLSWPGTSKYLVTGCVDG---KV--------------DGHIDAIQSLSVSAIRESLVSVSVD----GTA  191 (216)
Q Consensus       133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d----~~v  191 (216)
                           +...+.  .|++++++|+....++   .+              ......+..+.++|++..++....+    +.+
T Consensus       326 -----~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l  398 (693)
T 3iuj_A          326 -----ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTL  398 (693)
T ss_dssp             -----CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred             -----CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence                 334444  7778887776655433   12              1122346677778888766644433    789


Q ss_pred             EEEEccccc
Q 043942          192 RVFEIAEFR  200 (216)
Q Consensus       192 ~vw~~~~~~  200 (216)
                      +.||+.+++
T Consensus       399 ~~~d~~~g~  407 (693)
T 3iuj_A          399 YRFEPKSGA  407 (693)
T ss_dssp             EEECTTTCC
T ss_pred             EEEECCCCe
Confidence            999987654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.71  E-value=2.2e-06  Score=69.66  Aligned_cols=143  Identities=13%  Similarity=0.162  Sum_probs=87.2

Q ss_pred             EEEEEECCCcceeeeeec--cC-------CCeeEEEEcCCC---cEEEEecCCCeEEEEeCCCCceeEEeeccccccc--
Q 043942           63 TVWMWNADRGAYLNMFSG--HG-------SGLTCGDFTTDG---KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFS--  128 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--  128 (216)
                      .|..+|.++++.+..++.  |.       .....+....+|   +.++.++.+|.++++|.++|+.+..+........  
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            588889999988877653  21       122233334467   6889999999999999999998877654321100  


Q ss_pred             --ccceEE--------------Eeee--ecCeEEEEeCCCCcEEEEeccc------------------------------
Q 043942          129 --LNYWMI--------------CTSL--YDGVTCLSWPGTSKYLVTGCVD------------------------------  160 (216)
Q Consensus       129 --~~~~~~--------------~~~~--~~~v~~~~~~~~~~~l~~~~~~------------------------------  160 (216)
                        ......              +.+.  ...-..++++|++.++++...+                              
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence              000000              0000  0000145666766666554221                              


Q ss_pred             -------------CeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          161 -------------GKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       161 -------------~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                                   +.+             ..+..++....+...+..++.++.||.+++||.++++.+-.+
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence                         233             233344455566677888888999999999999999877544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.68  E-value=4.2e-05  Score=57.44  Aligned_cols=169  Identities=13%  Similarity=0.048  Sum_probs=98.5

Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeeeeeccCCCe-----
Q 043942           25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNMFSGHGSGL-----   85 (216)
Q Consensus        25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~~~~~~~~v-----   85 (216)
                      ++..++.++.++.|..+|..+++............              .++.+..+|.++++.+..........     
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence            45677888889999999999999887766543211              68889999999998877765432211     


Q ss_pred             eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942           86 TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--  163 (216)
Q Consensus        86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--  163 (216)
                      ......  +..++.++.++.+..+|..+++.+.......................++.      .+..++.++.++.+  
T Consensus       182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV------VNGVVFALAYNGNLTA  253 (376)
T ss_dssp             CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE------ETTEEEEECTTSCEEE
T ss_pred             CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE------ECCEEEEEecCcEEEE
Confidence            122222  45677888899999999999988776653211000000000000001100      12233333333333  


Q ss_pred             ----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          164 ----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       164 ----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                                .........+..  ++..+..++.++.+..+|..+++..-
T Consensus       254 ~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w  301 (376)
T 3q7m_A          254 LDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW  301 (376)
T ss_dssp             EETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred             EECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence                      111122333333  45667777889999999998877653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.67  E-value=9.1e-06  Score=57.66  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=85.4

Q ss_pred             CCCCceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWM   66 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i   66 (216)
                      +++|+.++++ - ..........+++ ++.+..-.++.+.+||..+.+.+.++.....+.             .++.|.+
T Consensus        82 ~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~  159 (268)
T 3nok_A           82 LESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTF  159 (268)
T ss_dssp             SSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEE
T ss_pred             CCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEE
Confidence            3567777766 2 2233332233333 455555678999999999999999998654433             5788999


Q ss_pred             EECCCcceeeeeec--cC---CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecc
Q 043942           67 WNADRGAYLNMFSG--HG---SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRS  123 (216)
Q Consensus        67 ~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~  123 (216)
                      +|..+.+.+.++.-  +.   ..++.+.|. +|+..+..-.+..|.+.|.++++.+..+...
T Consensus       160 iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~  220 (268)
T 3nok_A          160 HEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDAS  220 (268)
T ss_dssp             ECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred             EcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence            99999888777653  21   245677877 7776666667889999999999999888864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.66  E-value=5.9e-06  Score=63.18  Aligned_cols=99  Identities=11%  Similarity=-0.042  Sum_probs=74.4

Q ss_pred             cCCCEEEEEcC-C----CcEEEEECCCCceEEEEeCCCC-cc------------c-----------CcEEEEEECCCcce
Q 043942           24 TDGQLLASGGF-H----GLVQNRDTSSRNLQCTVEGPRG-GI------------E-----------DSTVWMWNADRGAY   74 (216)
Q Consensus        24 ~~~~~l~s~~~-d----~~v~vwd~~~~~~~~~~~~~~~-~~------------~-----------~~~v~i~d~~~~~~   74 (216)
                      +++++++.+.. +    +.|.++|..+++.+.++..... .+            .           ++.|.++|..+++.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v  161 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP  161 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence            46666555544 2    6999999999999988864222 22            1           45799999999988


Q ss_pred             eeeeecc-------CCCeeEEEEcCCCcEEEEecC--CCeEEEEeCCCCceeEEeec
Q 043942           75 LNMFSGH-------GSGLTCGDFTTDGKTICTGSD--NATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        75 ~~~~~~~-------~~~v~~~~~~~~~~~l~t~~~--d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +..+.-.       ......++++|||++++++..  ++.|.+.|+.+++.+..+..
T Consensus       162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            8776522       234568899999999998764  68899999999998887765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.65  E-value=5.8e-06  Score=67.28  Aligned_cols=60  Identities=20%  Similarity=0.306  Sum_probs=42.5

Q ss_pred             EEEEEECCCcceeeeeec--cC-------CCeeEEEEcCCCc---EEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           63 TVWMWNADRGAYLNMFSG--HG-------SGLTCGDFTTDGK---TICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .|..+|.++|+.+..++.  |.       ..........+|+   .++.++.+|.++++|.++|+.+...+.
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~  347 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGI  347 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccc
Confidence            489999999998877654  21       1122222223565   788999999999999999998765543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.64  E-value=2.7e-05  Score=55.62  Aligned_cols=156  Identities=10%  Similarity=-0.002  Sum_probs=100.6

Q ss_pred             CCCceeEEeeccc-cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC-CCcc-------------cCcEEEE
Q 043942            2 NQGDWASEILGHK-DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP-RGGI-------------EDSTVWM   66 (216)
Q Consensus         2 ~~g~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~~-------------~~~~v~i   66 (216)
                      ++|+.+.++.-.. .....+++.. ++..++.-.++.+.++|..+.+.+.++... ..+.             .++.|.+
T Consensus        52 ~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~v  130 (266)
T 2iwa_A           52 QTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYE  130 (266)
T ss_dssp             TTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEE
T ss_pred             CCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEE
Confidence            5677777665211 1222444542 244455556889999999999999998755 2222             6688999


Q ss_pred             EECCCcceeeeeeccC-----CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccccc--ccceEEEeeee
Q 043942           67 WNADRGAYLNMFSGHG-----SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFS--LNYWMICTSLY  139 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  139 (216)
                      +|..+.+.+..+.-..     ..++.+.|. ++...+....++.|.+.|..+++.+..+........  ...    ....
T Consensus       131 iD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~----~~~~  205 (266)
T 2iwa_A          131 IDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEG----FRDI  205 (266)
T ss_dssp             ECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTT----CTTC
T ss_pred             EECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccc----cccc
Confidence            9999888777765211     236788888 776666666789999999999999888875321100  000    0012


Q ss_pred             cCeEEEEeCCCCcEEEEe-cccCeE
Q 043942          140 DGVTCLSWPGTSKYLVTG-CVDGKV  163 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~-~~~~~i  163 (216)
                      ...+.++|+|+++.++++ ...+.+
T Consensus       206 ~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          206 DVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCCeE
Confidence            456899999998765554 344433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.63  E-value=3.7e-05  Score=53.98  Aligned_cols=121  Identities=9%  Similarity=0.026  Sum_probs=85.2

Q ss_pred             CCCceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEEE
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWMW   67 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i~   67 (216)
                      ++|+.++++.-.. ........++++ .....-.++.+.+||..+.+.+.++.....+.             .++.|.++
T Consensus        51 ~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~i  129 (243)
T 3mbr_X           51 ETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKL  129 (243)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEE
T ss_pred             CCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEE
Confidence            5677777665332 223333333344 44455678999999999999999998654433             67789999


Q ss_pred             ECCCcceeeeeeccC-----CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc
Q 043942           68 NADRGAYLNMFSGHG-----SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS  124 (216)
Q Consensus        68 d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~  124 (216)
                      |..+.+.+.++.-..     ..++.+.|. +|+..+..-.+..|.+.|.++++.+..+....
T Consensus       130 Dp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~  190 (243)
T 3mbr_X          130 DPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQA  190 (243)
T ss_dssp             CTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGG
T ss_pred             eCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCc
Confidence            999988877765321     345677766 67766666578899999999999998888643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.62  E-value=9.6e-06  Score=61.93  Aligned_cols=170  Identities=14%  Similarity=0.043  Sum_probs=107.6

Q ss_pred             ceEEEEEccCCCEEEEEcCC------CcEEEEECCCCceEEEEeCCCCcc-----------------c------------
Q 043942           16 SFSSLAFSTDGQLLASGGFH------GLVQNRDTSSRNLQCTVEGPRGGI-----------------E------------   60 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~-----------------~------------   60 (216)
                      ....+..+|+| .++++..+      +.+.+.|..+.+.+.++.......                 .            
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence            34566788999 77776655      789999999999998886432110                 1            


Q ss_pred             ---------CcEEEEEECCCcceeeeeecc-C-CCeeEEEE--cCCCcEEEEec------CCCeEEEEeCCCCcee--EE
Q 043942           61 ---------DSTVWMWNADRGAYLNMFSGH-G-SGLTCGDF--TTDGKTICTGS------DNATLSIWNPKGGENF--HA  119 (216)
Q Consensus        61 ---------~~~v~i~d~~~~~~~~~~~~~-~-~~v~~~~~--~~~~~~l~t~~------~d~~i~~wd~~~~~~~--~~  119 (216)
                               ..+|.+||+.+++.+.++..- . .....++|  +|+++++.+++      .+++|.+|..+.++..  +.
T Consensus       218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v  297 (462)
T 2ece_A          218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV  297 (462)
T ss_dssp             CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred             chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence                     699999999998877777642 1 23456656  99999887766      5678888777655321  12


Q ss_pred             eecccccccccc--e-EEEeeeecCeEEEEeCCCCcEEEEecc-cCeE---------------EeeeC------------
Q 043942          120 IRRSSLEFSLNY--W-MICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV---------------DGHID------------  168 (216)
Q Consensus       120 ~~~~~~~~~~~~--~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i---------------~~~~~------------  168 (216)
                      +...........  . ..+.+.......+.+++||++|+++.. .+.|               ....+            
T Consensus       298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~  377 (462)
T 2ece_A          298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH  377 (462)
T ss_dssp             EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred             EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence            111100000000  0 000000245678999999999888765 3333               00111            


Q ss_pred             ----CEEEEEEecCCCeEEEEe
Q 043942          169 ----AIQSLSVSAIRESLVSVS  186 (216)
Q Consensus       169 ----~i~~~~~~~~~~~l~s~~  186 (216)
                          ....+.++|||++|+++.
T Consensus       378 ~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          378 KLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCSCCCCEEECTTSSEEEEEC
T ss_pred             cCCCCCCEEEEcCCCCEEEEEc
Confidence                257899999999998887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.61  E-value=4.6e-05  Score=54.41  Aligned_cols=176  Identities=7%  Similarity=-0.069  Sum_probs=98.7

Q ss_pred             cceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCCC-Cc--c--------------cCcEEEEEECCCcceee
Q 043942           15 DSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPR-GG--I--------------EDSTVWMWNADRGAYLN   76 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~-~~--~--------------~~~~v~i~d~~~~~~~~   76 (216)
                      ..+..++|+++++.|. +-...+.|.++++........+.... .+  +              ..+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            3567899999665554 55567899999997665433332211 11  1              33455555554322111


Q ss_pred             eeeccCCCeeEEEEcCCCcEEEEecC---CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942           77 MFSGHGSGLTCGDFTTDGKTICTGSD---NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                      ...........++++|++..|..+..   .+.|..+++. +.....+...              .......+++++++..
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~--------------~~~~P~gia~d~~~~~  180 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQD--------------NLGLPNGLTFDAFSSQ  180 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECT--------------TCSCEEEEEEETTTTE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEEC--------------CCCCCcEEEEcCCCCE
Confidence            12112245789999996555544443   4688888876 3333322210              2245678899987665


Q ss_pred             EEEe-cccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          154 LVTG-CVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       154 l~~~-~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                      |+.+ ...+.|             .........++.. .+.++++....+.|.++|..+++....++
T Consensus       181 lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          181 LCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            5444 444555             1111234566553 33444444456899999998877665543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.58  E-value=1e-05  Score=60.15  Aligned_cols=88  Identities=11%  Similarity=0.027  Sum_probs=56.7

Q ss_pred             cceEEEEEccCCCEEEEEcC--CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942           15 DSFSSLAFSTDGQLLASGGF--HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT   92 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~   92 (216)
                      ..+..++++++|+.+++...  ++.+++|.+.+++. ..+.  .               ..  .....+-..+..+++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p--~---------------~~--~~~~~~~~~p~gv~~d~   76 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFP--P---------------QS--GNAIITFDTVLGIKSDG   76 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESC--C---------------CC--SSCCCCCSCEEEEEECS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCC--C---------------cc--cCcccceeEeeEEEEcC
Confidence            67899999999999988642  34345555433221 1100  0               00  01123556789999999


Q ss_pred             CCcEEEEecC-----CCeEEEEeCCCCceeEEeec
Q 043942           93 DGKTICTGSD-----NATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        93 ~~~~l~t~~~-----d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +++++++-..     ++.|.+||+.+++.+..+..
T Consensus        77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~  111 (343)
T 2qe8_A           77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYL  111 (343)
T ss_dssp             SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEEC
T ss_pred             CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEEC
Confidence            9887766543     57899999999987766653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.54  E-value=8.4e-06  Score=59.86  Aligned_cols=172  Identities=15%  Similarity=0.087  Sum_probs=96.4

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEEC
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNA   69 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~   69 (216)
                      |+.......+...+.++...+++. +..++.++.+..+|.. ++....+.......              . +.+..+| 
T Consensus       126 g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d-  201 (330)
T 3hxj_A          126 GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-DKVYAIN-  201 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-SSEEEEC-
T ss_pred             CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-CEEEEEC-
Confidence            344444444444556666766666 5556677889999988 77666555432221              3 5667777 


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      .+++...........+.++...+++.. ..++.++.+..+|. +++....+...               ...+..+...+
T Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~---------------~~~~~~~~~~~  264 (330)
T 3hxj_A          202 PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTG---------------KRIESSPVIGN  264 (330)
T ss_dssp             TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECS---------------SCCCSCCEECT
T ss_pred             CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCC---------------CCccccceEcC
Confidence            666666555555566778888877654 44556777888874 45555544431               11112233333


Q ss_pred             CCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          150 TSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       150 ~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ++. ++.++.+|.+             ......+.++..+++|+ |..++.+|.+++...+.
T Consensus       265 ~g~-l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          265 TDT-IYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             TSC-EEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             CCe-EEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            443 3344444333             11122344555556665 45577788888876554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.53  E-value=1.8e-05  Score=64.35  Aligned_cols=98  Identities=12%  Similarity=0.101  Sum_probs=74.9

Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEEeCC-C----Ccc---------------c------CcEEEEEECCCcceeeee
Q 043942           25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGP-R----GGI---------------E------DSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~----~~~---------------~------~~~v~i~d~~~~~~~~~~   78 (216)
                      ++..++.++.|+.+..+|..+++.+.++... .    ..+               .      ++.|+.+|.++|+.+..+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            4567888889999999999999999888765 2    011               1      689999999999988766


Q ss_pred             eccCC--------------------------------CeeEEEEcCCCcEEEEecCCC-------------------eEE
Q 043942           79 SGHGS--------------------------------GLTCGDFTTDGKTICTGSDNA-------------------TLS  107 (216)
Q Consensus        79 ~~~~~--------------------------------~v~~~~~~~~~~~l~t~~~d~-------------------~i~  107 (216)
                      .....                                ....++++|++..+..++.++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            53221                                113578899888888877664                   599


Q ss_pred             EEeCCCCceeEEeec
Q 043942          108 IWNPKGGENFHAIRR  122 (216)
Q Consensus       108 ~wd~~~~~~~~~~~~  122 (216)
                      .+|.++|+.+-.+..
T Consensus       287 AlD~~TG~~~W~~~~  301 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQE  301 (677)
T ss_dssp             EECTTTCCEEEEEES
T ss_pred             EEECCCCCEEEEEec
Confidence            999999998877764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.53  E-value=5.8e-06  Score=60.71  Aligned_cols=152  Identities=14%  Similarity=0.109  Sum_probs=94.1

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDF   90 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~   90 (216)
                      +..+..++.++.+..+|.. ++.......+....               .++.+..+|.. ++....+......+.++..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence            4567778888899999988 76665555433221               45888889988 7776666655566777888


Q ss_pred             cCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------
Q 043942           91 TTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------  163 (216)
Q Consensus        91 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------  163 (216)
                      .+++..++..   +.+..+| .+++.......               ....+.++...++|.+.+ ++.++.+       
T Consensus       185 d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~---------------~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          185 GKDGTIYFGS---DKVYAIN-PDGTEKWNFYA---------------GYWTVTRPAISEDGTIYV-TSLDGHLYAINPDG  244 (330)
T ss_dssp             CTTCCEEEES---SSEEEEC-TTSCEEEEECC---------------SSCCCSCCEECTTSCEEE-EETTTEEEEECTTS
T ss_pred             cCCCEEEEEe---CEEEEEC-CCCcEEEEEcc---------------CCcceeceEECCCCeEEE-EcCCCeEEEECCCC
Confidence            7777755544   7899999 66776655543               233455566666655433 3333333       


Q ss_pred             ------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          164 ------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       164 ------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                            ......+..+...+++ .|..++.+|.+..+|. +++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCE
T ss_pred             CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcE
Confidence                  1111122334444455 4566777888988885 4443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.52  E-value=8.2e-05  Score=55.83  Aligned_cols=158  Identities=13%  Similarity=0.060  Sum_probs=96.2

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc---------c----------cCcEEEEEECCCcceeeeeeccCCC--
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG---------I----------EDSTVWMWNADRGAYLNMFSGHGSG--   84 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---------~----------~~~~v~i~d~~~~~~~~~~~~~~~~--   84 (216)
                      +..++.++.++.+..+|..+++...........         .          .++.+..+|..+++.+.........  
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~  222 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS  222 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence            347788888999999999999888776553221         1          5788999999999887665422110  


Q ss_pred             -----eeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942           85 -----LTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG  157 (216)
Q Consensus        85 -----v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  157 (216)
                           +..+.-.|  .+..+..++.++.+..+|.++++.+.......                 ...+..  ++..++.+
T Consensus       223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-----------------~~~~~~--~~~~l~~~  283 (376)
T 3q7m_A          223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-----------------VNDFIV--DGNRIYLV  283 (376)
T ss_dssp             -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-----------------EEEEEE--ETTEEEEE
T ss_pred             cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-----------------CCCceE--ECCEEEEE
Confidence                 00011111  24577778889999999999998876654311                 112222  13344444


Q ss_pred             cccCeEE-----------ee----eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          158 CVDGKVD-----------GH----IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       158 ~~~~~i~-----------~~----~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      +.++.+.           ..    ...+.....  .+..|+.++.+|.++++|..+++....
T Consensus       284 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~  343 (376)
T 3q7m_A          284 DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQ  343 (376)
T ss_dssp             ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            4444440           00    011111222  245677888899999999998876543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.41  E-value=0.00018  Score=51.08  Aligned_cols=177  Identities=16%  Similarity=0.217  Sum_probs=101.6

Q ss_pred             EeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCC----Ccc-------------cCcEEEEEECC
Q 043942            9 EILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPR----GGI-------------EDSTVWMWNAD   70 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----~~~-------------~~~~v~i~d~~   70 (216)
                      .+.+-.+.+..++|+|+++ ++++...++.|...|.. ++.++.+....    .++             .++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4445556899999999765 55557778889999998 88888775421    111             45667777765


Q ss_pred             Ccce---eeeee------ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC---CceeEEeecccccccccceEEEeee
Q 043942           71 RGAY---LNMFS------GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG---GENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        71 ~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      ....   +....      ..+.....++|+|+++.|.++.......+|.++.   ...+...........        ..
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~--------~~  171 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ--------FT  171 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT--------CC
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc--------cc
Confidence            4331   12221      1344568999999987777776555555555541   111222211000000        02


Q ss_pred             ecCeEEEEeCCCCcEE-EEecccCeE----------------Ee------eeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          139 YDGVTCLSWPGTSKYL-VTGCVDGKV----------------DG------HIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l-~~~~~~~~i----------------~~------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      ...+..++++|....+ +.+.....+                .+      .......++|+++|++.++ ++.+.++++.
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            2345777887754443 333333333                11      1135689999999985555 6666555554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.35  E-value=4.7e-05  Score=62.03  Aligned_cols=178  Identities=10%  Similarity=0.041  Sum_probs=106.5

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC---------------cc----------cCcEEEEEECCCcceeeeeec
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG---------------GI----------EDSTVWMWNADRGAYLNMFSG   80 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---------------~~----------~~~~v~i~d~~~~~~~~~~~~   80 (216)
                      +..++.++.++.|..+|..+++.+-++.....               ..          .++.|+.+|.++|+.+..+..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~  149 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT  149 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence            55677788889999999999999888754321               01          689999999999998877654


Q ss_pred             c--CCCeeEEEEcC---CCcEEEEec-----CCCeEEEEeCCCCceeEEeeccccccccc-----------c-----eEE
Q 043942           81 H--GSGLTCGDFTT---DGKTICTGS-----DNATLSIWNPKGGENFHAIRRSSLEFSLN-----------Y-----WMI  134 (216)
Q Consensus        81 ~--~~~v~~~~~~~---~~~~l~t~~-----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----------~-----~~~  134 (216)
                      .  ......+..+|   ++..++..+     .++.|..||.++|+.+-.+..........           .     +..
T Consensus       150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~  229 (689)
T 1yiq_A          150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE  229 (689)
T ss_dssp             CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH
T ss_pred             cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeee
Confidence            2  11111111222   444444322     37899999999999887775321100000           0     000


Q ss_pred             EeeeecCeEEEEeCCCCcEEEEecccCe-------------------E--------------Ee--e-------eCCEEE
Q 043942          135 CTSLYDGVTCLSWPGTSKYLVTGCVDGK-------------------V--------------DG--H-------IDAIQS  172 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~-------------------i--------------~~--~-------~~~i~~  172 (216)
                      ..+.......++++|+...++.+..++.                   +              ..  |       ..++.-
T Consensus       230 ~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l  309 (689)
T 1yiq_A          230 QGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMIL  309 (689)
T ss_dssp             HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred             cCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEE
Confidence            0001111224667777777777766542                   3              10  1       112222


Q ss_pred             EEEecCCC---eEEEEeCCCcEEEEEccccccee
Q 043942          173 LSVSAIRE---SLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       173 ~~~~~~~~---~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      .....+|+   .++.++.+|.++++|..+++.+.
T Consensus       310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  343 (689)
T 1yiq_A          310 AELPIDGKPRKVLMQAPKNGFFYVIDRATGELLS  343 (689)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             EeeccCCcEEEEEEEECCCCeEEEEECCCCCEec
Confidence            22233564   78889999999999999998764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.32  E-value=0.00021  Score=52.90  Aligned_cols=155  Identities=11%  Similarity=0.146  Sum_probs=98.0

Q ss_pred             CCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-Ccc---------------------c--CcEEEEEECC--Ccceeeee
Q 043942           25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-GGI---------------------E--DSTVWMWNAD--RGAYLNMF   78 (216)
Q Consensus        25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~~---------------------~--~~~v~i~d~~--~~~~~~~~   78 (216)
                      ...+++.....+-+.+||+ +++.++.+.... ..+                     .  +++|.+|++.  ++. +..+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i  116 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM  116 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence            3456777777889999999 888888775311 111                     4  7899999763  333 4333


Q ss_pred             ec------cC-CCeeEEEE--cCC-Cc-EEEEecCCCeEEEEeCC---CC----ceeEEeecccccccccceEEEeeeec
Q 043942           79 SG------HG-SGLTCGDF--TTD-GK-TICTGSDNATLSIWNPK---GG----ENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        79 ~~------~~-~~v~~~~~--~~~-~~-~l~t~~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      ..      .. ..+..+++  +|. ++ ++++...++.+..|++.   .+    +.+.++..                ..
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----------------gs  180 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----------------NS  180 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----------------SS
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----------------CC
Confidence            21      11 45667777  674 43 67778888999999983   22    44555553                34


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE---------------------EeeeCCEEEEEE--ecCCC-eEEEEe-CCCcEEEEE
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV---------------------DGHIDAIQSLSV--SAIRE-SLVSVS-VDGTARVFE  195 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i---------------------~~~~~~i~~~~~--~~~~~-~l~s~~-~d~~v~vw~  195 (216)
                      .+..+...+....|+.+-++..|                     ......+..+++  .++++ ||++++ .++++.+||
T Consensus       181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            55566666665666665555444                     011135777777  45555 666666 478999999


Q ss_pred             cc
Q 043942          196 IA  197 (216)
Q Consensus       196 ~~  197 (216)
                      ..
T Consensus       261 r~  262 (355)
T 3amr_A          261 RQ  262 (355)
T ss_dssp             SS
T ss_pred             CC
Confidence            96

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.29  E-value=0.00011  Score=53.94  Aligned_cols=161  Identities=6%  Similarity=0.058  Sum_probs=98.1

Q ss_pred             eeccccceEEEEEccCCCEEEEEc-CCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeec------cC
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSG------HG   82 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~------~~   82 (216)
                      +....--..++.|.+....|..++ ..+.|..||...+.....                         .+.+      ..
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-------------------------~~~~~s~~g~~~   62 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-------------------------VIDGASSNGDGE   62 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-------------------------CCTTTCCSSCCS
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-------------------------ecCCccccCCCc
Confidence            333344456789988555555544 677777777653322111                         1111      11


Q ss_pred             CCeeEEEE---cCCCcEEEEec-------------CCCeEEEEeCC---CCceeEEeeccccccc--ccceEEEeeeecC
Q 043942           83 SGLTCGDF---TTDGKTICTGS-------------DNATLSIWNPK---GGENFHAIRRSSLEFS--LNYWMICTSLYDG  141 (216)
Q Consensus        83 ~~v~~~~~---~~~~~~l~t~~-------------~d~~i~~wd~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  141 (216)
                      ..+..|.|   .|+++++++..             .++.+..+|+.   +++.+...........  ...    ......
T Consensus        63 ~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~----g~~~~~  138 (334)
T 2p9w_A           63 QQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKA----GKRPFG  138 (334)
T ss_dssp             EEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHH----SSCCEE
T ss_pred             ceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccc----cccccC
Confidence            13478999   68877777543             26789999999   7877665543211000  000    001124


Q ss_pred             eEEEEeCCCCcEEEEeccc-CeE------------Eee-------eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          142 VTCLSWPGTSKYLVTGCVD-GKV------------DGH-------IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~-~~i------------~~~-------~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      ...++..++|+..++++.. +.|            ...       ....+.++++|+|+.|++....+.+..+|+...
T Consensus       139 ~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          139 VVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            7788889999888877776 665            000       112458999999998888766999999998753

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.29  E-value=0.00046  Score=50.67  Aligned_cols=166  Identities=12%  Similarity=0.052  Sum_probs=96.9

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC----------------------CCcc---c-CcE-----
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP----------------------RGGI---E-DST-----   63 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~----------------------~~~~---~-~~~-----   63 (216)
                      ....+++|+++++++.++..++.|..||..+++........                      ..++   . ++.     
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            44678899999987888888899999998765433211100                      0000   1 344     


Q ss_pred             ----EEEEECCCcceeeeeec-----cCCCeeEEEEcC-CCcEEEEecC-----------------CCeEEEEeCCCCce
Q 043942           64 ----VWMWNADRGAYLNMFSG-----HGSGLTCGDFTT-DGKTICTGSD-----------------NATLSIWNPKGGEN  116 (216)
Q Consensus        64 ----v~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~t~~~-----------------d~~i~~wd~~~~~~  116 (216)
                          +..+|..++.. ..+..     .......+++.+ +|+..++-..                 ++.|..+|..+++.
T Consensus        99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence                44444443321 11111     113467899999 8887776432                 36788888776654


Q ss_pred             eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe-cccCeEE---------------eeeCCEEEEEEecCCC
Q 043942          117 FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG-CVDGKVD---------------GHIDAIQSLSVSAIRE  180 (216)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~i~---------------~~~~~i~~~~~~~~~~  180 (216)
                      .....                .......++++|++++++.+ ..++.|.               ........++++++|+
T Consensus       178 ~~~~~----------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~G~  241 (322)
T 2fp8_A          178 TLLLK----------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGH  241 (322)
T ss_dssp             EEEEE----------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTTSC
T ss_pred             EEecc----------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCCCC
Confidence            32221                22345678899998866554 4445550               0011167789999998


Q ss_pred             eEEEEeC----------CCcEEEEEcc
Q 043942          181 SLVSVSV----------DGTARVFEIA  197 (216)
Q Consensus       181 ~l~s~~~----------d~~v~vw~~~  197 (216)
                      +.++...          .+.|..+|..
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             EEEEecCcccccccCCCccEEEEECCC
Confidence            7776544          3556777653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.08  E-value=1.3e-05  Score=60.24  Aligned_cols=86  Identities=16%  Similarity=0.092  Sum_probs=62.5

Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec----------CCCeEEEEeCCCCceeEEeeccc-ccccccc
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS----------DNATLSIWNPKGGENFHAIRRSS-LEFSLNY  131 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~----------~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~  131 (216)
                      +|.++|..+++.+.++..-..+  .+.++||+++++++.          .++.|.+||+.+++.+..+.... ..+.   
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~---  121 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS---  121 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC---
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc---
Confidence            7888888888888887654454  799999999998886          47889999999999998886410 0000   


Q ss_pred             eEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942          132 WMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus       132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                            .......+.++|||++++++..
T Consensus       122 ------~g~~P~~ia~SpDGk~lyVan~  143 (368)
T 1mda_H          122 ------VGPRVHIIGNCASSACLLFFLF  143 (368)
T ss_dssp             ------BSCCTTSEEECTTSSCEEEEEC
T ss_pred             ------cCCCcceEEEcCCCCEEEEEcc
Confidence                  0123456778888888777653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.08  E-value=0.0017  Score=49.11  Aligned_cols=172  Identities=9%  Similarity=-0.056  Sum_probs=93.9

Q ss_pred             cceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCC---Ccc----cCcEEEEEE----------CCCcceee
Q 043942           15 DSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPR---GGI----EDSTVWMWN----------ADRGAYLN   76 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~---~~~----~~~~v~i~d----------~~~~~~~~   76 (216)
                      ..+..++|++.+..| .+-...+.|+.+++........+....   .++    .++.+++-|          +.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            456789999755544 455567889999988765444332211   111    234444444          33222222


Q ss_pred             eeeccCCCeeEEEEcCCCcEEEEe-cCC-CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           77 MFSGHGSGLTCGDFTTDGKTICTG-SDN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~~l~t~-~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      .+.........++++|.+..|..+ ... +.|..+++...........               .......++++|++..|
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------------~~~~PnGlavd~~~~~l  260 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---------------HLFWPNGLTIDYAGRRM  260 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---------------SCSCEEEEEEEGGGTEE
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---------------CCCCeeeEEEeCCCCEE
Confidence            222223457889999866655444 344 6788888774332222221               22345678887655444


Q ss_pred             EEe-cccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          155 VTG-CVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       155 ~~~-~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      +.+ ...+.|              .........+++ ..+.++++-...+.|..++..+++..
T Consensus       261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          261 YWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             EEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence            433 333444              111235567777 34455556556788888885555543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.07  E-value=0.0007  Score=55.00  Aligned_cols=97  Identities=13%  Similarity=0.135  Sum_probs=70.6

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC---------cc----------c------CcEEEEEECCCcceeeeeec
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG---------GI----------E------DSTVWMWNADRGAYLNMFSG   80 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---------~~----------~------~~~v~i~d~~~~~~~~~~~~   80 (216)
                      +..++.++.|+.|..+|..+++.+.+......         +.          .      ++.|+.+|.++|+.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            45788888899999999999998887765321         10          1      58899999999998877642


Q ss_pred             cC-------------------------------CCeeEEEEcCCCcEEEEecCCCe-------------------EEEEe
Q 043942           81 HG-------------------------------SGLTCGDFTTDGKTICTGSDNAT-------------------LSIWN  110 (216)
Q Consensus        81 ~~-------------------------------~~v~~~~~~~~~~~l~t~~~d~~-------------------i~~wd  110 (216)
                      ..                               .....++++|+...+..++.++.                   |..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            10                               01124688888888888877663                   88888


Q ss_pred             CCCCceeEEeec
Q 043942          111 PKGGENFHAIRR  122 (216)
Q Consensus       111 ~~~~~~~~~~~~  122 (216)
                      .++|+.+-.+..
T Consensus       277 ~~tG~~~W~~~~  288 (668)
T 1kv9_A          277 PDTGKLAWHYQV  288 (668)
T ss_dssp             TTTCCEEEEEES
T ss_pred             CCCCceeeEeec
Confidence            888887766653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.06  E-value=0.0014  Score=52.26  Aligned_cols=60  Identities=20%  Similarity=0.236  Sum_probs=41.6

Q ss_pred             EEEEEECCCcceeeeeecc--CC-------CeeEEEEcCCCc---EEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           63 TVWMWNADRGAYLNMFSGH--GS-------GLTCGDFTTDGK---TICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~--~~-------~v~~~~~~~~~~---~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .|..+|.++++.+..++..  ..       ...-+...++|+   .++.++.+|.+.++|..+|+.+..+..
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence            5888999999887776532  11       111122224674   577889999999999999998876654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.00  E-value=0.00058  Score=55.49  Aligned_cols=60  Identities=12%  Similarity=0.270  Sum_probs=47.3

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +.|..||+.+++.+.+...+ .......+...+.++++++.|+.++.||.++++.+..+..
T Consensus       438 g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            78999999999988776633 3333334445678899999999999999999999888865

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.99  E-value=0.0023  Score=47.63  Aligned_cols=172  Identities=11%  Similarity=-0.024  Sum_probs=94.9

Q ss_pred             cceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCCC---Ccc--------------cCcEEEEEECCCcceee
Q 043942           15 DSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPR---GGI--------------EDSTVWMWNADRGAYLN   76 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~---~~~--------------~~~~v~i~d~~~~~~~~   76 (216)
                      ..+..++|++....|. +-...+.|+.+++........+....   .++              ..+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            3467899997655554 44567889999988765444332211   111              33455555554332222


Q ss_pred             eeeccCCCeeEEEEcCCCcEE-EEecCC-CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           77 MFSGHGSGLTCGDFTTDGKTI-CTGSDN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~~l-~t~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      .+...-.....++++|.+..| ++-... +.|..+++.. .....+...              .-.....++++|++..|
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~--------------~~~~PnGla~d~~~~~l  217 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADT--------------HLFWPNGLTIDYAGRRM  217 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCS--------------SCSCEEEEEEETTTTEE
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEEC--------------CCCCcceEEEeCCCCEE
Confidence            222233457899999865544 444444 7888888773 333332210              22346778888755544


Q ss_pred             EEe-cccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          155 VTG-CVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       155 ~~~-~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      +.+ ...+.|              .........+++ .++..+++-...+.|...+..+++..
T Consensus       218 Y~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          218 YWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence            443 333444              111235567777 34455555556778888875555443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.97  E-value=0.0019  Score=45.95  Aligned_cols=126  Identities=10%  Similarity=-0.017  Sum_probs=76.5

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcE-EEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKT-ICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      .++.|..+++........+.........++++|++.. +++-...+.|.++++...........               .
T Consensus        56 ~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---------------~  120 (267)
T 1npe_A           56 SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT---------------G  120 (267)
T ss_dssp             TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------------S
T ss_pred             CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC---------------C
Confidence            4567888888755433333222246789999996554 45555678999999874332222221               1


Q ss_pred             ecCeEEEEeCCCCcEEEEecc---cCeE------------E--eeeCCEEEEEEecCCCeEE-EEeCCCcEEEEEccccc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCV---DGKV------------D--GHIDAIQSLSVSAIRESLV-SVSVDGTARVFEIAEFR  200 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~---~~~i------------~--~~~~~i~~~~~~~~~~~l~-s~~~d~~v~vw~~~~~~  200 (216)
                      ......++++|++..++.+..   .+.+            .  ........++++|++..|. +....+.|.++++....
T Consensus       121 ~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            234578888885554443332   2344            0  1123578899999876665 44556899999987543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=0.00062  Score=52.30  Aligned_cols=118  Identities=7%  Similarity=-0.091  Sum_probs=65.2

Q ss_pred             EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-CC----eEEEEeCCCCcee--EEeecccccccccceEEE
Q 043942           63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NA----TLSIWNPKGGENF--HAIRRSSLEFSLNYWMIC  135 (216)
Q Consensus        63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~----~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~  135 (216)
                      .|+.+|+.++.... +.........++|+++++.|+.+.. ++    .+.+++.. +...  ..+.              
T Consensus       160 ~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~--------------  223 (430)
T 3tc9_A          160 PTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELT--------------  223 (430)
T ss_dssp             EEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEE--------------
T ss_pred             cEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeec--------------
Confidence            34444544433222 2223456789999999996655543 11    23334432 2221  1111              


Q ss_pred             eeeecCeEEEEeCC-CCcEEEEecccCeE---------E---e---eeCCEEEEEEecCCCeEE-EEeCCCcEEEEEccc
Q 043942          136 TSLYDGVTCLSWPG-TSKYLVTGCVDGKV---------D---G---HIDAIQSLSVSAIRESLV-SVSVDGTARVFEIAE  198 (216)
Q Consensus       136 ~~~~~~v~~~~~~~-~~~~l~~~~~~~~i---------~---~---~~~~i~~~~~~~~~~~l~-s~~~d~~v~vw~~~~  198 (216)
                        .......++++| ++.++++-..++.+         .   .   .......++|+|+|++|. +-...+.|..++...
T Consensus       224 --~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          224 --KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             --ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             --cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence              123456677888 66655555455555         0   0   112467899999999554 445578899988653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.92  E-value=0.0012  Score=50.13  Aligned_cols=133  Identities=11%  Similarity=0.075  Sum_probs=82.5

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC---
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT---   92 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~---   92 (216)
                      .|..+..||+|++||..+ +..|.|-.+..+.....   +......-.++.|.+...+     .....+|..+.|+|   
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~---~~~~~~~~q~~ty~l~~~~-----~~~~s~I~qVlWHPl~~  137 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVE---DVSIQDAFQIFHYSIDEEE-----VGPKSSIKKVLFHPKSY  137 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCC---CHHHHHTTEEEEEEGGGCC-------CCCCEEEEEECTTBG
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCc---ccccccccceeEEEcCCcc-----cCCCCceeEEEeccccC
Confidence            578899999999999987 56788888874321100   0000011224455554211     11357899999999   


Q ss_pred             CCcEEEEecCCCeEEEEeCCCCcee-EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe--cccCeE
Q 043942           93 DGKTICTGSDNATLSIWNPKGGENF-HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG--CVDGKV  163 (216)
Q Consensus        93 ~~~~l~t~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~~i  163 (216)
                      .+..|++-..|+.|++||+...... ..+.....      ..........+.+++|.+++-.|+..  .++|.|
T Consensus       138 ~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~------~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI  205 (452)
T 3pbp_A          138 RDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNN------SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI  205 (452)
T ss_dssp             GGCEEEEEETTSCEEEEETTCTTSCCEEESCCCS------EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred             CCCeEEEEecCCEEEEEEcccCCCCCcchhcccc------ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence            4568999999999999999863211 12321100      00111134778999999988777774  478877

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.87  E-value=0.00016  Score=59.60  Aligned_cols=104  Identities=9%  Similarity=-0.097  Sum_probs=63.8

Q ss_pred             ceEEEEEc-cCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCc-ceee-eeeccCCCeeEEEEc
Q 043942           16 SFSSLAFS-TDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRG-AYLN-MFSGHGSGLTCGDFT   91 (216)
Q Consensus        16 ~v~~~~~s-~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~-~~~~-~~~~~~~~v~~~~~~   91 (216)
                      .+...+|| |||++||-+.. +|.                      ...+|+++|+.++ +.+. .+.   .....++|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~----------------------~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Ws  229 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGN----------------------EVYTIEFKRISDPSQTIADKVS---GTNGEIVWG  229 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSS----------------------SCEEEEEEETTCTTCCCCCCEE---EECSCCEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCC----------------------ceEEEEEEECCCCCEeCCcccc---CceeeEEEe
Confidence            57789999 99998886543 221                      1234566666655 4221 111   123578999


Q ss_pred             CCCcEEEEecCC-----CeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           92 TDGKTICTGSDN-----ATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        92 ~~~~~l~t~~~d-----~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                      ||++.|+....|     ..|+++++.++..  ...+...              .......+.|+|||++|+...
T Consensus       230 pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~--------------~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          230 PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEH--------------NPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECC--------------CTTCEEEEEECTTSSEEEEEE
T ss_pred             cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecC--------------CCceEEEEEECCCCCEEEEEe
Confidence            999888776654     3688888876642  2222210              223356788999999877654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.84  E-value=0.0042  Score=49.80  Aligned_cols=61  Identities=16%  Similarity=0.160  Sum_probs=43.1

Q ss_pred             cEEEEEECCCcceeeeeeccCC---------CeeEEEEc-CCC---cEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           62 STVWMWNADRGAYLNMFSGHGS---------GLTCGDFT-TDG---KTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~---------~v~~~~~~-~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +.|..+|.++++.+..++....         ...-+... .+|   +.++.++.+|.+.++|.++|+.+.....
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  351 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKL  351 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccc
Confidence            4788999999988877654221         11112222 467   5677889999999999999998876653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.84  E-value=0.0065  Score=48.57  Aligned_cols=61  Identities=16%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             cEEEEEECCCcceeeeeec--cCC-------CeeEEEEc-CCC---cEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           62 STVWMWNADRGAYLNMFSG--HGS-------GLTCGDFT-TDG---KTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~--~~~-------~v~~~~~~-~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +.|..+|..+|+.+..++.  |..       ...-+... .+|   ..++.++.+|.++++|.++|+.+..+..
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            5789999999998877653  211       11112222 466   3788899999999999999998876654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.82  E-value=0.0049  Score=45.89  Aligned_cols=167  Identities=10%  Similarity=-0.005  Sum_probs=90.8

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeee
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFS   79 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~   79 (216)
                      ...|.+..++. +|+.+. ...|+..++...+....+.....+.                ..+.|..+++........+.
T Consensus        35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             CCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            34555555533 444333 3457777776655444433322221                33444444444333222222


Q ss_pred             ccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE-Ee
Q 043942           80 GHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV-TG  157 (216)
Q Consensus        80 ~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~  157 (216)
                      ........+++.+. +++.++-...+.|.+.++........+..               .......++++|.+..++ +-
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---------------~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---------------SLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT---------------TCSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC---------------CCCCcceEEEecCcCeEEEec
Confidence            22234578899874 44556666778899999874433222221               224467788887554443 33


Q ss_pred             ccc-CeE--------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcccc
Q 043942          158 CVD-GKV--------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEF  199 (216)
Q Consensus       158 ~~~-~~i--------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~  199 (216)
                      ... +.|              .........++++|++..|..+ +..+.|..+++...
T Consensus       178 ~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          178 WGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             CSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            333 444              1122357899999876666544 45678999987653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.78  E-value=0.0023  Score=51.16  Aligned_cols=61  Identities=16%  Similarity=0.273  Sum_probs=44.2

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .+.|..||+.+++.+.+..... .+..-.....+.+++.++.|+.++.||.++|+.+..+..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            4678889999998876665332 222211222466788899999999999999999988875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.78  E-value=0.0051  Score=44.74  Aligned_cols=183  Identities=9%  Similarity=0.007  Sum_probs=94.3

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc--c---cCcE------------EEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG--I---EDST------------VWM   66 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--~---~~~~------------v~i   66 (216)
                      .+.+..+... .....++|+++|+++++-..++.|..||.... ....+.....+  +   .++.            |..
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            3445555432 45789999999997777778899999998753 33333221111  1   2233            444


Q ss_pred             EECCCcceeeeeec-cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccc-cccceEEEeeeecCeE
Q 043942           67 WNADRGAYLNMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEF-SLNYWMICTSLYDGVT  143 (216)
Q Consensus        67 ~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~v~  143 (216)
                      +|..+++....... .......++..+++..+++-..++.|+++|...++. +..... .... ...      ......+
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~-~~~~~~~~------~~~~~pn  172 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP-MLARSNSE------SVFPAAN  172 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG-GGSCSSTT------CCSCSEE
T ss_pred             EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECC-cccccccc------CCCCcCC
Confidence            45444443221111 112233444455555555555688999999876532 111111 0000 000      0001122


Q ss_pred             EEEeCCCCcEEEEec-ccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          144 CLSWPGTSKYLVTGC-VDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       144 ~~~~~~~~~~l~~~~-~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      .+  +|+++.++.+. ..+.|                .........++++++|++.++....+.|.+++..
T Consensus       173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            23  45554433332 23333                1111235678889999887777677889999865

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.77  E-value=0.0054  Score=44.90  Aligned_cols=98  Identities=6%  Similarity=0.036  Sum_probs=54.7

Q ss_pred             CeeEEEEcCCCcEEEEe-cCCCeEEEEeCCCCc--eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-
Q 043942           84 GLTCGDFTTDGKTICTG-SDNATLSIWNPKGGE--NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-  159 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~-~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  159 (216)
                      ....++++|+++.|..+ ...+.|.+|++....  ....+..               ... ...++++++|++.++... 
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---------------~~g-P~gi~~d~~G~l~va~~~~  249 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---------------IPN-PGNIKRNADGHFWVSSSEE  249 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---------------CSS-EEEEEECTTSCEEEEEEEE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---------------CCC-CCCeEECCCCCEEEEecCc
Confidence            45679999999866554 567899999987532  1111110               111 455677777765544332 


Q ss_pred             ---------cCeE-------------Eee----eCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          160 ---------DGKV-------------DGH----IDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       160 ---------~~~i-------------~~~----~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                               .+.+             ...    ...++.+++ .++++.++....+.|.++++..
T Consensus       250 ~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          250 LDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             ccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                     1222             000    123555555 4566666665677888888754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.77  E-value=0.007  Score=45.98  Aligned_cols=176  Identities=7%  Similarity=-0.045  Sum_probs=93.1

Q ss_pred             cccceEEEEEccCCCEEEEE-cCCCcEEEEECCCC----ceEEEEeCCCC---cc----cCcEEE----------EEECC
Q 043942           13 HKDSFSSLAFSTDGQLLASG-GFHGLVQNRDTSSR----NLQCTVEGPRG---GI----EDSTVW----------MWNAD   70 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~----~~~~~~~~~~~---~~----~~~~v~----------i~d~~   70 (216)
                      ....+..++|++.+..|..+ ...+.|+.+++...    .....+.....   ++    ..+.|+          +.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            34567899999865555544 45678888888752    22222221111   11    234444          44444


Q ss_pred             CcceeeeeeccCCCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      .......+.........|+++|.+..|..+.  ..+.|...++...........               .-.....++++
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~---------------~l~~P~glavd  254 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------------NIQWPNGITLD  254 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS---------------SCSCEEEEEEE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC---------------CCCceEEEEEE
Confidence            3322222322334578899998665555443  246788888874333222221               22456778888


Q ss_pred             CCCcEEEEec-ccCeE--------------Ee--eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          149 GTSKYLVTGC-VDGKV--------------DG--HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       149 ~~~~~l~~~~-~~~~i--------------~~--~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      +++..|+.+. ..+.|              ..  .......+++. .+.++.+-...+.|..++..+++....
T Consensus       255 ~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          255 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL  326 (400)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred             eCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEE
Confidence            7665555443 33344              10  11344566662 334455555678888888666655443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.75  E-value=0.0025  Score=50.83  Aligned_cols=61  Identities=11%  Similarity=0.091  Sum_probs=44.9

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      ++.+..||+.+++.+.++... ..+....+...+..++.++.|+.++.+|.++++.+..+..
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            368899999999887776532 2233322333466777899999999999999999888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.73  E-value=0.0077  Score=45.50  Aligned_cols=165  Identities=9%  Similarity=-0.015  Sum_probs=89.2

Q ss_pred             EEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeeecc
Q 043942           18 SSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFSGH   81 (216)
Q Consensus        18 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~~~   81 (216)
                      .|.+..+. .+|+.+. ...|+..++...+....+.....+.                ..+.|..+++........+...
T Consensus        80 ~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  157 (386)
T 3v65_B           80 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  157 (386)
T ss_dssp             CEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred             eECCcccc-ceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence            34444442 3444333 3568888887665544443322221                3344555555443322222222


Q ss_pred             CCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-c
Q 043942           82 GSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-V  159 (216)
Q Consensus        82 ~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  159 (216)
                      ......+++.+. +++.++-...+.|.+.++........+..               .......++++|.+..|+... .
T Consensus       158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~---------------~l~~P~giavdp~~g~ly~td~~  222 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---------------SLEKPRAIALHPMEGTIYWTDWG  222 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS---------------SCSCEEEEEEETTTTEEEEEECS
T ss_pred             CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC---------------CCCCCcEEEEEcCCCeEEEeccC
Confidence            234567888875 44555656678899988874433222221               224567778887555444333 2


Q ss_pred             c-CeE--------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcccc
Q 043942          160 D-GKV--------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEF  199 (216)
Q Consensus       160 ~-~~i--------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~  199 (216)
                      . +.|              .........++++|++..|..+ +..+.|..+++...
T Consensus       223 ~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          223 NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             SSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            2 344              1112346899999876666544 45678999887643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.67  E-value=0.0082  Score=43.99  Aligned_cols=174  Identities=9%  Similarity=-0.074  Sum_probs=93.5

Q ss_pred             ccceEEEEEccCCCEE-EEEcCCCcEEEEECCC----CceEEEEeCC---CCcc--------------cCcEEEEEECCC
Q 043942           14 KDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSS----RNLQCTVEGP---RGGI--------------EDSTVWMWNADR   71 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~----~~~~~~~~~~---~~~~--------------~~~~v~i~d~~~   71 (216)
                      ...+..++|++.++.| .+-...+.|..+++..    ......+...   ..++              ..+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            3456789999865544 4555568999999876    2222222211   1111              334455555543


Q ss_pred             cceeeeeeccCCCeeEEEEcCCCcEEEEec-CC-CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942           72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGS-DN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  149 (216)
                      ......+.........++++|.+..+..+. .. +.|...++. +.....+...              .-.....+++++
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~--------------~~~~P~gla~d~  173 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE--------------NIQWPNGITLDL  173 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECS--------------SCSCEEEEEEET
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEEC--------------CCCCceEEEEec
Confidence            222222222334678999998666554443 33 688888876 4433333210              224567788887


Q ss_pred             CCcEEEEec-ccCeE------------Ee----eeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          150 TSKYLVTGC-VDGKV------------DG----HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       150 ~~~~l~~~~-~~~~i------------~~----~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      ++..|+.+. ..+.|            ..    .......+++. .+.++++-...+.|..++..+++...
T Consensus       174 ~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          174 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  243 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             cCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence            655554433 33444            10    11345677774 35555556567889888876665433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.62  E-value=0.00022  Score=58.68  Aligned_cols=99  Identities=10%  Similarity=0.010  Sum_probs=64.2

Q ss_pred             CeeEEEEc-CCCcEEEEecC-C----CeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942           84 GLTCGDFT-TDGKTICTGSD-N----ATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT  156 (216)
Q Consensus        84 ~v~~~~~~-~~~~~l~t~~~-d----~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  156 (216)
                      .+...+|+ |||++|+.+.. +    ..|+++|+.++ +.+...                 .......+.|+|||+.|+.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-----------------~~~~~~~~~WspDg~~l~y  237 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-----------------VSGTNGEIVWGPDHTSLFY  237 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-----------------EEEECSCCEECSSTTEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-----------------ccCceeeEEEecCCCEEEE
Confidence            57789999 99998885432 2    35999999988 532110                 1111346789999877665


Q ss_pred             ecccC-----eE----------------E-eeeCCEEEEEEecCCCeEEEEeC---CCcEEEEEcccc
Q 043942          157 GCVDG-----KV----------------D-GHIDAIQSLSVSAIRESLVSVSV---DGTARVFEIAEF  199 (216)
Q Consensus       157 ~~~~~-----~i----------------~-~~~~~i~~~~~~~~~~~l~s~~~---d~~v~vw~~~~~  199 (216)
                      ...+.     .+                . ........+.|+|||++|+..+.   ...|+++|+.++
T Consensus       238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            55431     23                0 11234567899999998886553   346888888765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.56  E-value=0.026  Score=46.82  Aligned_cols=171  Identities=13%  Similarity=0.153  Sum_probs=103.8

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE----------------EEE-eCCCCcc----cCcEEEEEECCCcc
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ----------------CTV-EGPRGGI----EDSTVWMWNADRGA   73 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~----------------~~~-~~~~~~~----~~~~v~i~d~~~~~   73 (216)
                      ..|.++...++|.+ -.|+.++-|..|+..+....                ..+ ......+    .++-+..||..+++
T Consensus       310 ~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~  388 (795)
T 4a2l_A          310 RSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR  388 (795)
T ss_dssp             SCEEEEEECTTSCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC
T ss_pred             CcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc
Confidence            56999999998874 44556667888876543221                111 1111111    44568888877654


Q ss_pred             eeeeeec--------cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           74 YLNMFSG--------HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        74 ~~~~~~~--------~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      .......        ....|.++...++++.|..|+.++-+..+|..+++..........           .....|.++
T Consensus       389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~-----------l~~~~v~~i  457 (795)
T 4a2l_A          389 FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ-----------LVNENVYAI  457 (795)
T ss_dssp             EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC-----------CSCSCEEEE
T ss_pred             EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC-----------cCCCeeEEE
Confidence            4322111        235688999888888566677777799999887764332211000           034568888


Q ss_pred             EeCCCCcEEEEecccCeE---------E--e--------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          146 SWPGTSKYLVTGCVDGKV---------D--G--------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       146 ~~~~~~~~l~~~~~~~~i---------~--~--------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ...++|.+.+... +|..         .  .        ....|.++..+++|++.+...  +-+..|+..+.+
T Consensus       458 ~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~  528 (795)
T 4a2l_A          458 LPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD  528 (795)
T ss_dssp             EECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred             EECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence            8888887554433 5543         1  0        125688898988888666543  457888876544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.55  E-value=0.012  Score=43.05  Aligned_cols=124  Identities=13%  Similarity=0.021  Sum_probs=69.9

Q ss_pred             cCcEEEEEECCC----cceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEE
Q 043942           60 EDSTVWMWNADR----GAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI  134 (216)
Q Consensus        60 ~~~~v~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  134 (216)
                      .++.|..+++..    ......+...-.....+++++.+ +..++-...+.|.+.|+........+..            
T Consensus        50 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~------------  117 (316)
T 1ijq_A           50 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------  117 (316)
T ss_dssp             TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC------------
T ss_pred             CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC------------
Confidence            356677777664    11112222222456789998744 4555556788999999874433222221            


Q ss_pred             EeeeecCeEEEEeCCCCcEEEEecc-c-CeE------------E--eeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcc
Q 043942          135 CTSLYDGVTCLSWPGTSKYLVTGCV-D-GKV------------D--GHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIA  197 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~~~~~l~~~~~-~-~~i------------~--~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~  197 (216)
                         .......++++|.+..++.+.. . +.|            .  ..-.....++++|++..|..+ +..+.|..+++.
T Consensus       118 ---~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          118 ---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             ---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ---CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence               2234567777775444433322 2 344            0  112456899999877666554 456789999986


Q ss_pred             c
Q 043942          198 E  198 (216)
Q Consensus       198 ~  198 (216)
                      .
T Consensus       195 g  195 (316)
T 1ijq_A          195 G  195 (316)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.53  E-value=0.018  Score=44.25  Aligned_cols=168  Identities=11%  Similarity=0.042  Sum_probs=95.9

Q ss_pred             ceEEEEEccC--CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----cCcEEEEEECCC---cceeeeee------
Q 043942           16 SFSSLAFSTD--GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----EDSTVWMWNADR---GAYLNMFS------   79 (216)
Q Consensus        16 ~v~~~~~s~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----~~~~v~i~d~~~---~~~~~~~~------   79 (216)
                      ....++|+|+  +..|..+...+.|+.+|..+++..........+.     .++.+++=|...   ...+..+.      
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            4678999984  4455555544899999998776655433221111     455566666421   11111111      


Q ss_pred             -----ccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942           80 -----GHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus        80 -----~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                           ........++++| ++.++++-..++.|+.+|..++.....+....             .......++|+|++++
T Consensus       220 ~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-------------~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          220 ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-------------TKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-------------CCSSCEEEEECTTSSE
T ss_pred             ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-------------CCCCcccEEEeCCCCE
Confidence                 1123356788899 66666666678899999998776522221100             1112235788888874


Q ss_pred             EEEe-cccCeEEe---------------------------------eeCCEEEEEE---------ecCCCeEEEEeCCCc
Q 043942          154 LVTG-CVDGKVDG---------------------------------HIDAIQSLSV---------SAIRESLVSVSVDGT  190 (216)
Q Consensus       154 l~~~-~~~~~i~~---------------------------------~~~~i~~~~~---------~~~~~~l~s~~~d~~  190 (216)
                      |+.+ ...+.|..                                 .-.....+++         .++|++.++-...+.
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~  366 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT  366 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence            4443 33344410                                 0123566888         677777777666778


Q ss_pred             EEEEEc
Q 043942          191 ARVFEI  196 (216)
Q Consensus       191 v~vw~~  196 (216)
                      |+.++.
T Consensus       367 I~~~~~  372 (433)
T 4hw6_A          367 VRVLTP  372 (433)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            888874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.51  E-value=0.0015  Score=53.31  Aligned_cols=175  Identities=9%  Similarity=-0.041  Sum_probs=90.6

Q ss_pred             cceEEEEEccCCCEEEEEc-CCCcEEEEECCC----CceEEEEe----CCCCcc-------------cCcEEEEEECCCc
Q 043942           15 DSFSSLAFSTDGQLLASGG-FHGLVQNRDTSS----RNLQCTVE----GPRGGI-------------EDSTVWMWNADRG   72 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~----~~~~~~~~----~~~~~~-------------~~~~v~i~d~~~~   72 (216)
                      ..+..++|++.+..|+.+. ..+.|+.+++..    ......+.    .+..-.             ..+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3456889998666665554 557899998875    22111111    111100             3456666666544


Q ss_pred             ceeeeeeccCCCeeEEEEcCCCcEEEEec-CC-CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           73 AYLNMFSGHGSGLTCGDFTTDGKTICTGS-DN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      .....+.........++++|.+..|+.+. .. +.|..+++... ....+...              .-...+.|+|+|+
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~--------------~l~~PnGlavd~~  550 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE--------------NIQWPNGITLDLL  550 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCS--------------SCSSCCCEEECTT
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeC--------------CCCCccEEEEecc
Confidence            33222222234567889998665555443 22 67888777632 22222110              1233566778776


Q ss_pred             CcEEE-EecccCeEE----------------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          151 SKYLV-TGCVDGKVD----------------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       151 ~~~l~-~~~~~~~i~----------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      +..|+ +-...+.|.                ........+++..+ .++++....+.|..++..+++....+
T Consensus       551 ~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          551 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             TCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             CCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            54443 333344440                00122334555443 34445555688999987766654433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.50  E-value=0.019  Score=43.93  Aligned_cols=189  Identities=10%  Similarity=0.100  Sum_probs=113.3

Q ss_pred             EEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEEEECCC-cceeeeeeccC---
Q 043942           20 LAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWMWNADR-GAYLNMFSGHG---   82 (216)
Q Consensus        20 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i~d~~~-~~~~~~~~~~~---   82 (216)
                      .--+|..+.+|-=. ...+.++|+++.+.++....++.-+             .+..|+-|++.. ..+.+.+..|.   
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~  149 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA  149 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcc
Confidence            44567777666554 6789999999999999998877654             889999999973 45666666553   


Q ss_pred             -CCeeEEEEcCCCcEEEEec-------CCCeEEEEeCCCCceeEEeecccccccccceEEEee--eecCeEEEEeC-CCC
Q 043942           83 -SGLTCGDFTTDGKTICTGS-------DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS--LYDGVTCLSWP-GTS  151 (216)
Q Consensus        83 -~~v~~~~~~~~~~~l~t~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~-~~~  151 (216)
                       ..|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.+....+..   ....+  +...+.+++.. +.|
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~---~~~~g~~~~~~lf~fa~r~~~g  225 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ---FKMEGNAEESTLFCFAVRGQAG  225 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEE---EECTTCSSEEEEEEEEECSTTC
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEE---EecCCCCCCceEEEEEEecCCC
Confidence             4666777788999887543       24778889887543 3333331111000   00000  11122333322 122


Q ss_pred             cEEEEe--ccc--Ce--E-----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942          152 KYLVTG--CVD--GK--V-----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF  213 (216)
Q Consensus       152 ~~l~~~--~~~--~~--i-----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~  213 (216)
                      ..|-..  +..  +.  .           ..-..-..++..++....+..-+.-|.+++||++++.++..-...+-.+|
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF  304 (494)
T 1bpo_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (494)
T ss_dssp             CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence            211111  100  10  0           11123456777788777788888899999999999998875444444443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.50  E-value=0.019  Score=46.01  Aligned_cols=103  Identities=14%  Similarity=0.119  Sum_probs=69.4

Q ss_pred             EEEccCCCE----EEEEcCCCcEEEEECCCCceEEEEeCCCC---------cc---------c-------CcEEEEEECC
Q 043942           20 LAFSTDGQL----LASGGFHGLVQNRDTSSRNLQCTVEGPRG---------GI---------E-------DSTVWMWNAD   70 (216)
Q Consensus        20 ~~~s~~~~~----l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---------~~---------~-------~~~v~i~d~~   70 (216)
                      ++++|.+..    ++.++.|+.+..+|..+++.+-+......         +.         .       ++.|+-+|.+
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~  190 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVK  190 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETT
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECC
Confidence            455443333    78888899999999999998877654321         11         1       6899999999


Q ss_pred             CcceeeeeeccCCC-------------------------------------e-eEEEEcCCCcEEEEecCC---------
Q 043942           71 RGAYLNMFSGHGSG-------------------------------------L-TCGDFTTDGKTICTGSDN---------  103 (216)
Q Consensus        71 ~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~t~~~d---------  103 (216)
                      +|+.+.++......                                     + ..+++.++...+..++.+         
T Consensus       191 TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r  270 (599)
T 1w6s_A          191 TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR  270 (599)
T ss_dssp             TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred             CCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence            99987665532111                                     0 135566777777776654         


Q ss_pred             -------CeEEEEeCCCCceeEEeec
Q 043942          104 -------ATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus       104 -------~~i~~wd~~~~~~~~~~~~  122 (216)
                             +.|..+|.++|+.+-.+..
T Consensus       271 ~gd~~y~~sv~Ald~~TG~~~W~~q~  296 (599)
T 1w6s_A          271 PGDNKWTMTIFGRDADTGEAKFGYQK  296 (599)
T ss_dssp             CSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred             CCCccccceEEEEeCCCCceeeEeec
Confidence                   3688888888887766654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.45  E-value=0.016  Score=42.06  Aligned_cols=155  Identities=10%  Similarity=0.055  Sum_probs=84.1

Q ss_pred             cceEEEEEccCCCEEEEEcCC--CcEEEEECCCCceEEEEeCCCCc------------c-----cCcEEEEEECCCcce-
Q 043942           15 DSFSSLAFSTDGQLLASGGFH--GLVQNRDTSSRNLQCTVEGPRGG------------I-----EDSTVWMWNADRGAY-   74 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~------------~-----~~~~v~i~d~~~~~~-   74 (216)
                      ..+..++++++|+++++....  ..|..+|..+++...........            .     .++.|+++|..+++. 
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            467889999999966655432  24667787777654433321110            0     356777777664321 


Q ss_pred             eeee-------e--ccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCC-Cce--eEEeecccccccccceEEEeeeecC
Q 043942           75 LNMF-------S--GHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKG-GEN--FHAIRRSSLEFSLNYWMICTSLYDG  141 (216)
Q Consensus        75 ~~~~-------~--~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      +...       .  ..-.....+  +|+++.| ++-...+.|..+|+.. ++.  ...+.                ....
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~----------------~~~~  213 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV----------------EQTN  213 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE----------------ESCC
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe----------------ccCC
Confidence            1100       0  111234455  7777655 4455678999999874 321  11111                1123


Q ss_pred             eEEEEeCCCCcEEEEecccCeE---------Ee------eeCCEEEEEEe---cCCCeEEEEeC
Q 043942          142 VTCLSWPGTSKYLVTGCVDGKV---------DG------HIDAIQSLSVS---AIRESLVSVSV  187 (216)
Q Consensus       142 v~~~~~~~~~~~l~~~~~~~~i---------~~------~~~~i~~~~~~---~~~~~l~s~~~  187 (216)
                      ...++++++|+++++....+.|         ..      .....++++|.   |+++.|+.++.
T Consensus       214 P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          214 IDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            3456666776655444333333         10      12457889998   78766655443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.44  E-value=0.013  Score=41.54  Aligned_cols=105  Identities=10%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             eeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942           78 FSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT  156 (216)
Q Consensus        78 ~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  156 (216)
                      +.+-...+..++|+|++..| ++...++.|...|.. ++....++..              .......+++.+++.++++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~--------------g~~D~EGIa~~~~g~~~vs   86 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD--------------FVKDLETIEYIGDNQFVIS   86 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS--------------SCSSEEEEEECSTTEEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC--------------CCCChHHeEEeCCCEEEEE
Confidence            44555679999999976655 557788999999998 8877776531              1234556666666655444


Q ss_pred             ecccCeE-----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          157 GCVDGKV-----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       157 ~~~~~~i-----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      .-.++.+                       .........++|+|.++.|.++.+.....+|.+.
T Consensus        87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            3233222                       0122345899999999777776665555555554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.44  E-value=0.037  Score=45.84  Aligned_cols=170  Identities=10%  Similarity=0.053  Sum_probs=101.7

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe---------------CCCCcc---cCcEEEEEECCCcceee
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE---------------GPRGGI---EDSTVWMWNADRGAYLN   76 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---------------~~~~~~---~~~~v~i~d~~~~~~~~   76 (216)
                      ..|.++...++|+.|..|+.++-+..||..+++......               .....+   ..+-+.+||..+++...
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTT  485 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEE
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEE
Confidence            568999998888856666666779999988765332211               111111   22457788887664432


Q ss_pred             eee------ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           77 MFS------GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        77 ~~~------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      ...      .....|.++...++++..+...  +-+..||..+++.  .+.......        ......|.++..+++
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~--------~l~~~~i~~i~~d~~  553 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVS--------NVTKLFTNCIYEASN  553 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSC--------GGGGSCEEEEEECTT
T ss_pred             ccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCC--------CCCCCeeEEEEECCC
Confidence            211      1235688999998888666554  4588899877654  332100000        003456888888888


Q ss_pred             CcEEEEecccCeE---------Ee-------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          151 SKYLVTGCVDGKV---------DG-------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       151 ~~~l~~~~~~~~i---------~~-------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      |.+.+... .|..         ..       ....|.++..+++|++.+++  ++-+..|+..+.
T Consensus       554 g~lWigT~-~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~  615 (795)
T 4a2l_A          554 GIIWVGTR-EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETE  615 (795)
T ss_dssp             SCEEEEES-SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTT
T ss_pred             CCEEEEeC-CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCC
Confidence            87554433 3544         10       12458888888888876655  345667776543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.38  E-value=0.021  Score=41.85  Aligned_cols=171  Identities=9%  Similarity=-0.044  Sum_probs=93.5

Q ss_pred             ceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEE-EE-eC--CCCcc--------------cCcEEEEEECCCcceee
Q 043942           16 SFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQC-TV-EG--PRGGI--------------EDSTVWMWNADRGAYLN   76 (216)
Q Consensus        16 ~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~-~~-~~--~~~~~--------------~~~~v~i~d~~~~~~~~   76 (216)
                      .+..++|++.+ .++.+-...+.|..+++....... .+ ..  ...++              ..+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            45688999854 445555567889999987763211 11 11  11111              33455555554322222


Q ss_pred             eeeccCCCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           77 MFSGHGSGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      .+.........++++|.+..|..+.  ..+.|...++. |.....+...              .-...+.++++|++..|
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~--------------~l~~Pnglavd~~~~~l  180 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINS--------------EIYWPNGLTLDYEEQKL  180 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECS--------------SCSCEEEEEEETTTTEE
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEEC--------------CCCCccEEEEeccCCEE
Confidence            2223334578899998655555444  35788888876 3333332210              22345778888755544


Q ss_pred             EEe-cccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          155 VTG-CVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       155 ~~~-~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      +.+ ...+.|              .........+++.. +.++.+-...+.|..++..+++..
T Consensus       181 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          181 YWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence            443 333444              11223456677743 344455555788988888766543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=0.046  Score=45.19  Aligned_cols=171  Identities=12%  Similarity=0.062  Sum_probs=99.9

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEE-------------EE-eCCCCcc----cCcEEEEEECCCcceee
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC-------------TV-EGPRGGI----EDSTVWMWNADRGAYLN   76 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~-------------~~-~~~~~~~----~~~~v~i~d~~~~~~~~   76 (216)
                      ..|.++...++|++. .|+.++-+..||..++....             .+ ......+    .++-+..+|.++++...
T Consensus       363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~  441 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI  441 (781)
T ss_dssp             SCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE
T ss_pred             cceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE
Confidence            468899888887744 45545568888876543211             11 1111111    34667888877664432


Q ss_pred             eee--ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           77 MFS--GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        77 ~~~--~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      ...  .....|.++...+++++.+. +. +-+..+|..+++..........   .       .....|.++...++|.+.
T Consensus       442 ~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~---~-------~~~~~i~~i~~d~~g~lW  509 (781)
T 3v9f_A          442 IELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNS---Q-------LLENFVRSIAQDSEGRFW  509 (781)
T ss_dssp             CCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTS---S-------CSCSCEEEEEECTTCCEE
T ss_pred             eccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCccc---c-------cccceeEEEEEcCCCCEE
Confidence            211  13457889988888875554 44 5688999887654432221100   0       023568888888888765


Q ss_pred             EEecccCeE---------Ee-------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          155 VTGCVDGKV---------DG-------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       155 ~~~~~~~~i---------~~-------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      +....+|..         ..       ....|.++..+++|++.++.. +|.+..||..+.
T Consensus       510 igt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~  569 (781)
T 3v9f_A          510 IGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF  569 (781)
T ss_dssp             EEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred             EEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence            544334543         10       124688888888888665443 665477776654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.30  E-value=0.033  Score=42.29  Aligned_cols=156  Identities=11%  Similarity=0.024  Sum_probs=86.1

Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------cCcEEEEEECCCcc--------------eeeeeeccCCCeeE
Q 043942           28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------EDSTVWMWNADRGA--------------YLNMFSGHGSGLTC   87 (216)
Q Consensus        28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------~~~~v~i~d~~~~~--------------~~~~~~~~~~~v~~   87 (216)
                      +|+.+. ...|+..++...+....+.......      .++.|++-|...++              ....+.........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            344333 4577777777665544443322221      23444444443221              11112222345678


Q ss_pred             EEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-c-cCeE-
Q 043942           88 GDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-V-DGKV-  163 (216)
Q Consensus        88 ~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~~~i-  163 (216)
                      +++.+ .+++.++-...+.|.+.+++.......+..               .......++++|.+..|+... . .+.| 
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~---------------~~~~P~~iavdp~~g~ly~td~~~~~~I~  228 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIK  228 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC---------------SSCCEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC---------------CCCCcceEEEecccCeEEEEeCCCCCEEE
Confidence            88887 455556666778899999875443333322               233467778877544444332 1 2333 


Q ss_pred             -------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcccc
Q 043942          164 -------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEF  199 (216)
Q Consensus       164 -------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~  199 (216)
                                   ...-.....+++++++..|..+ +..+.|..+|+...
T Consensus       229 ~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          229 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence                         1112467899999877766655 44678999988653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.30  E-value=0.056  Score=44.84  Aligned_cols=174  Identities=9%  Similarity=-0.041  Sum_probs=89.0

Q ss_pred             cccceEEEEEccCCC-EEEEEcCCCcEEEEECCCC----ceEEEEeCC---CCcc--------------cCcEEEEEECC
Q 043942           13 HKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSR----NLQCTVEGP---RGGI--------------EDSTVWMWNAD   70 (216)
Q Consensus        13 h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~----~~~~~~~~~---~~~~--------------~~~~v~i~d~~   70 (216)
                      ....+..++|++... ++++-...+.|+.+++...    .....+...   ..++              ..+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            345567899998544 4455555678888888753    222223211   1111              34455555555


Q ss_pred             CcceeeeeeccCCCeeEEEEcCCCcEEEEec-C-CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGS-D-NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      .......+.........|+++|.+..|..+. . .+.|...++........+..               .-.....|+++
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~---------------~l~~P~GLavD  566 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------------NIQWPNGITLD  566 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---------------SCSCEEEEEEE
T ss_pred             CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC---------------CCCCceEEEEe
Confidence            3332222222334578999999755554443 3 36788888874333222221               22456777777


Q ss_pred             CCCcEEEEec-ccCeE--------------Ee--eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          149 GTSKYLVTGC-VDGKV--------------DG--HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       149 ~~~~~l~~~~-~~~~i--------------~~--~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      +.+..|+.+. ..+.|              ..  .-....++++.. ++++++-...+.|...+..+++..
T Consensus       567 ~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          567 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred             cCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence            6555444432 33334              10  112344555532 233344445677777776665543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.29  E-value=0.036  Score=42.49  Aligned_cols=105  Identities=6%  Similarity=0.023  Sum_probs=57.4

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcC-CC----cEEEEECCCCceE--EEEe--CCCCcc--------------cCcE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGF-HG----LVQNRDTSSRNLQ--CTVE--GPRGGI--------------EDST   63 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~----~v~vwd~~~~~~~--~~~~--~~~~~~--------------~~~~   63 (216)
                      +..+.........++|+++|++|+.+.. ++    .+.+.+. .+...  ..+.  .+...+              .++.
T Consensus       171 v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~  249 (430)
T 3tc9_A          171 VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQ  249 (430)
T ss_dssp             EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTE
T ss_pred             EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCE
Confidence            3344334456789999999996665554 22    2333443 22221  2221  111111              3455


Q ss_pred             EEEEECCCcceeeeeec-cCCCeeEEEEcCCCcE-EEEecCCCeEEEEeCC
Q 043942           64 VWMWNADRGAYLNMFSG-HGSGLTCGDFTTDGKT-ICTGSDNATLSIWNPK  112 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~t~~~d~~i~~wd~~  112 (216)
                      |..++..++........ .......++|+|++++ +++-...+.|..++..
T Consensus       250 V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          250 VFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            66666654433121211 1234678999999995 4555577889998866

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.21  E-value=0.019  Score=39.66  Aligned_cols=147  Identities=14%  Similarity=0.156  Sum_probs=79.1

Q ss_pred             cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942           15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG   94 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~   94 (216)
                      ..+.+++|+|+|.+.+.  .+|.+.-.+..+....                .|- .+.+.+-.. +-. ....+.|.|+|
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~----------------~W~-~s~t~IG~~-Gw~-~F~a~~fD~~G   99 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND----------------NWM-GRAKKIGNG-GWN-QFQFLFFDPNG   99 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC----------------CHH-HHCEEEECS-CGG-GCSEEEECTTS
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcc----------------ccc-ccccEeccc-ccc-cceEEEECCCC
Confidence            46789999999987666  5565544443221100                000 000111000 111 25789999999


Q ss_pred             cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeEEeeeC------
Q 043942           95 KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID------  168 (216)
Q Consensus        95 ~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~~------  168 (216)
                      .+.++  .||.|+-++--+.....-+..        ...+-...-..+..+.+.|+|.+.++.  ++.+..+..      
T Consensus       100 ~LYav--~dG~iyr~~pP~~~~~~Wl~~--------a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~  167 (236)
T 1tl2_A          100 YLYAV--SKDKLYKASPPQSDTDNWIAR--------ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQD  167 (236)
T ss_dssp             CEEEE--ETTEEEEESCCCSTTCCHHHH--------SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTC
T ss_pred             CEEEe--CCCEEEEeCCCcCCCCceecc--------ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCc
Confidence            98888  569888887532211100000        000000022567899999999988777  666621211      


Q ss_pred             ---------------CEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          169 ---------------AIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       169 ---------------~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                                     .-..+.|++++.+.+..  ++  ++|....
T Consensus       168 ~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~  208 (236)
T 1tl2_A          168 NWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP  208 (236)
T ss_dssp             CHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             ccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence                           23446688888876655  66  4454443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.15  E-value=0.043  Score=40.75  Aligned_cols=121  Identities=10%  Similarity=-0.014  Sum_probs=64.9

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCee
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLT   86 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~   86 (216)
                      +..+-..-...+.|+|.|+|+++++--..|.|++++..+++... +              -.+.     ...........
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~-v--------------~~~~-----~v~~~g~~Gll   83 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTE-L--------------GEVP-----GVSPSGEGGLL   83 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-E--------------EECT-----TCCCBTTBSEE
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEee-e--------------cccC-----ceeecCCCCce
Confidence            34444445677899999999988877657777777654333210 0              0000     01112345678


Q ss_pred             EEEEcCC----CcEEEEe--cCCCeEEEEeCCCCc--------eeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           87 CGDFTTD----GKTICTG--SDNATLSIWNPKGGE--------NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        87 ~~~~~~~----~~~l~t~--~~d~~i~~wd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      .|+++|+    +.+.++-  ..++.|.-|....+.        ....+....           .........+.|.|+|.
T Consensus        84 Gia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p-----------~~~~H~g~~l~fgpDG~  152 (347)
T 3das_A           84 GIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIP-----------KGVIHNGGRIAFGPDKM  152 (347)
T ss_dssp             EEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEEC-----------CCSSCCCCCEEECTTSC
T ss_pred             eeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCC-----------CCCCccCccccCCCCCC
Confidence            9999995    4333321  234556666655421        111111000           00122346789999998


Q ss_pred             EEEEec
Q 043942          153 YLVTGC  158 (216)
Q Consensus       153 ~l~~~~  158 (216)
                      ++++.+
T Consensus       153 Lyvt~G  158 (347)
T 3das_A          153 LYAGTG  158 (347)
T ss_dssp             EEEECB
T ss_pred             EEEEEC
Confidence            777654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.12  E-value=0.044  Score=40.26  Aligned_cols=101  Identities=13%  Similarity=0.154  Sum_probs=58.8

Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      ....+..+.+.++++.++. +.+|.+++.+...++.-..+......           ....+..+.+.+++..++++. +
T Consensus       203 ~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~g~-~  269 (327)
T 2xbg_A          203 TSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRR-----------NSVGFLDLAYRTPNEVWLAGG-A  269 (327)
T ss_dssp             SSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSS-----------CCSCEEEEEESSSSCEEEEES-T
T ss_pred             CCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCccc-----------CCcceEEEEecCCCEEEEEeC-C
Confidence            3456788899988876654 45777777643323322212110000           223577888888777666654 4


Q ss_pred             CeE----------E------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          161 GKV----------D------GHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       161 ~~i----------~------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      +.+          .      .....+..+.|.++++ +++++.+|.|.-++
T Consensus       270 g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          270 GALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             TCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            433          1      1124678888876555 55666788776655

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.10  E-value=0.016  Score=44.10  Aligned_cols=94  Identities=16%  Similarity=0.210  Sum_probs=63.9

Q ss_pred             CCCcEEEEecCCCeEEEEeCCCCceeEEeeccc-ccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------
Q 043942           92 TDGKTICTGSDNATLSIWNPKGGENFHAIRRSS-LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------  163 (216)
Q Consensus        92 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------  163 (216)
                      .++..++.+ .++.||.-++......+.+..+. +            ....+..+..+|+|++++..+..+..       
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i------------~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~   96 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHL------------VLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWG   96 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTC------------CCCTTCEEEECTTSSEEEEECSSEEEEEECCTT
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCCcceEEecCccc------------ccCceeEEEECCCCCEEEEecCCeEEEEEecCc
Confidence            345555544 34678877777544444444311 0            12367889999999999987765543       


Q ss_pred             ----E--------------------eeeCCEEEEEEecCC---CeEEEEeCCCcEEEEEccc
Q 043942          164 ----D--------------------GHIDAIQSLSVSAIR---ESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       164 ----~--------------------~~~~~i~~~~~~~~~---~~l~s~~~d~~v~vw~~~~  198 (216)
                          .                    ....+|..+.|+|-+   ..|++-..|+.||+||+..
T Consensus        97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A           97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                0                    014579999999954   5799999999999999986

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.02  E-value=0.011  Score=47.91  Aligned_cols=99  Identities=13%  Similarity=0.215  Sum_probs=60.5

Q ss_pred             EEEEcc-CCCEEEEEcCCC-----------cEEEEECCCCceEE--EEeCC----C--------Ccc------cCcEEEE
Q 043942           19 SLAFST-DGQLLASGGFHG-----------LVQNRDTSSRNLQC--TVEGP----R--------GGI------EDSTVWM   66 (216)
Q Consensus        19 ~~~~s~-~~~~l~s~~~d~-----------~v~vwd~~~~~~~~--~~~~~----~--------~~~------~~~~v~i   66 (216)
                      .+++.+ +++.++.|+.+.           .+.+||..+++...  .+..+    .        ..+      .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 888888887543           58899998875322  22111    1        001      3447888


Q ss_pred             EECCCcceeeeeeccC-CCeeEEEEcCCCcEEEEec-CC-----CeEEEEeCCCCcee
Q 043942           67 WNADRGAYLNMFSGHG-SGLTCGDFTTDGKTICTGS-DN-----ATLSIWNPKGGENF  117 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~t~~-~d-----~~i~~wd~~~~~~~  117 (216)
                      ||..+.+-...-..+. ..-.+++..++++.++.|+ .+     ..+.+||..+++..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            8887654332211111 1223556667899999988 34     56999999877643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.02  E-value=0.072  Score=40.89  Aligned_cols=104  Identities=7%  Similarity=0.017  Sum_probs=54.8

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCC---Cc-EEEEECCCCc----eEEEEeCCCCcc-------------cCcEEEEE
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFH---GL-VQNRDTSSRN----LQCTVEGPRGGI-------------EDSTVWMW   67 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~-v~vwd~~~~~----~~~~~~~~~~~~-------------~~~~v~i~   67 (216)
                      ++.........++++++|+++++....   .. +...+...+.    ....+..+....             .++.|+.+
T Consensus       176 ~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~  255 (433)
T 4hw6_A          176 IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSY  255 (433)
T ss_dssp             EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEE
T ss_pred             EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEE
Confidence            343344568899999999955554321   11 2233322211    111111111111             45567777


Q ss_pred             ECCCcceeeee-ec-cCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCC
Q 043942           68 NADRGAYLNMF-SG-HGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPK  112 (216)
Q Consensus        68 d~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~  112 (216)
                      |..++.....+ .. ....-..++|+|+++.| ++-...+.|+.++..
T Consensus       256 d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          256 DPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             ECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            77655542222 11 11223469999999854 455567889998865

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.97  E-value=0.078  Score=42.96  Aligned_cols=156  Identities=11%  Similarity=0.032  Sum_probs=85.9

Q ss_pred             EEEEccCCCEEEEEc-CC-----CcEEEEECCCCceEEEE-----eCCCC---cc---------------------cCcE
Q 043942           19 SLAFSTDGQLLASGG-FH-----GLVQNRDTSSRNLQCTV-----EGPRG---GI---------------------EDST   63 (216)
Q Consensus        19 ~~~~s~~~~~l~s~~-~d-----~~v~vwd~~~~~~~~~~-----~~~~~---~~---------------------~~~~   63 (216)
                      +++..++++.++.|+ .+     ..+.+||..+.+....-     .....   ..                     ....
T Consensus       291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~  370 (656)
T 1k3i_A          291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTA  370 (656)
T ss_dssp             EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSE
T ss_pred             ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccc
Confidence            455667899999988 34     56999999887543320     00000   00                     2346


Q ss_pred             EEEEECCCcceeeeeeccC---------CCeeEEEEcC-CCcEEEEecCCC-----------eEEEEeCCCCceeEEeec
Q 043942           64 VWMWNADRGAYLNMFSGHG---------SGLTCGDFTT-DGKTICTGSDNA-----------TLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~~l~t~~~d~-----------~i~~wd~~~~~~~~~~~~  122 (216)
                      +..||..+.........+.         ..-.++.|.. +++.++.|+.++           .+.+||..+.........
T Consensus       371 v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~  450 (656)
T 1k3i_A          371 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN  450 (656)
T ss_dssp             EEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT
T ss_pred             eeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC
Confidence            7788887655332222111         1223444443 778888887543           677888876654433200


Q ss_pred             ccccccccceEEEeeeecC-eEEEEeCCCCcEEEEecccC-----------eE----------------EeeeCCEEEEE
Q 043942          123 SSLEFSLNYWMICTSLYDG-VTCLSWPGTSKYLVTGCVDG-----------KV----------------DGHIDAIQSLS  174 (216)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~-----------~i----------------~~~~~~i~~~~  174 (216)
                       .+            .... -.+.+..|++++++.|+.+.           .+                ...........
T Consensus       451 -~m------------p~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~  517 (656)
T 1k3i_A          451 -GL------------YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISL  517 (656)
T ss_dssp             -CC------------SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEE
T ss_pred             -CC------------CCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhh
Confidence             00            1111 12345567889888887541           11                00111223455


Q ss_pred             EecCCCeEEEEeC
Q 043942          175 VSAIRESLVSVSV  187 (216)
Q Consensus       175 ~~~~~~~l~s~~~  187 (216)
                      +.|+++.++.|+.
T Consensus       518 ll~dg~v~v~GG~  530 (656)
T 1k3i_A          518 LLPDGRVFNGGGG  530 (656)
T ss_dssp             ECTTSCEEEEECC
T ss_pred             cCCCcEEEecCCC
Confidence            6789999999885

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.82  E-value=0.084  Score=38.68  Aligned_cols=124  Identities=10%  Similarity=-0.029  Sum_probs=68.9

Q ss_pred             cCcEEEEEECCCccee-eeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           60 EDSTVWMWNADRGAYL-NMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ..+.|..+++..+... ..+...-.....+++.+. ++++++-...+.|.++++........+..               
T Consensus        55 ~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---------------  119 (318)
T 3sov_A           55 SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ---------------  119 (318)
T ss_dssp             TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------------
T ss_pred             CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC---------------
Confidence            3455666666544221 112222234678899874 45556656778899999874332222222               


Q ss_pred             eecCeEEEEeCCCCcEEEEec--ccCeE--------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEccc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGC--VDGKV--------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAE  198 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~--~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~  198 (216)
                      .......++++|.+..|+.+.  ..+.|              ...-.....++++|++..|..+ +..+.|..+++..
T Consensus       120 ~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          120 ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            223456666666433333322  12333              1112356899999976665544 4568899999864

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.76  E-value=0.18  Score=41.66  Aligned_cols=168  Identities=11%  Similarity=0.105  Sum_probs=96.5

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE------------E-eCCCCcc---cCcEEEEEECCCcceeee
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT------------V-EGPRGGI---EDSTVWMWNADRGAYLNM   77 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~------------~-~~~~~~~---~~~~v~i~d~~~~~~~~~   77 (216)
                      ...|.++...++|++.+ |+.++-+..+|..+++....            + ......+   ..+-+..||..+++....
T Consensus       406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~  484 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHH  484 (781)
T ss_dssp             CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEE
T ss_pred             CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEec
Confidence            35688898888887555 55556688888766543221            1 1111111   235677888776554332


Q ss_pred             eecc-----CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           78 FSGH-----GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        78 ~~~~-----~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      ....     ...|.++...++|++.+.. .++-+..+|..+++.. .+.....           .....|.++...++|.
T Consensus       485 ~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~-~~~~~~~-----------l~~~~i~~i~~d~~g~  551 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVR-KFNQYEG-----------FCSNTINQIYRSSKGQ  551 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEE-EECTTTT-----------CSCSCEEEEEECTTSC
T ss_pred             ccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEE-EccCCCC-----------CCCCeeEEEEECCCCC
Confidence            2211     3578899999888766544 4334777888765433 3321100           0345688888888887


Q ss_pred             EEEEecccCe-E---------Ee-------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          153 YLVTGCVDGK-V---------DG-------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       153 ~l~~~~~~~~-i---------~~-------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      +.++.. +|. .         ..       ....|.++..+++|++.+++ .+| |..++..+
T Consensus       552 lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~  611 (781)
T 3v9f_A          552 MWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSK  611 (781)
T ss_dssp             EEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTT
T ss_pred             EEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCC
Confidence            554433 666 3         00       11356788888888765544 344 66666554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.018  Score=42.56  Aligned_cols=97  Identities=19%  Similarity=0.201  Sum_probs=66.0

Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEEeCC--CCc-------------------ccCcEEEEEECCCcceeeeeecc----
Q 043942           27 QLLASGGFHGLVQNRDTSSRNLQCTVEGP--RGG-------------------IEDSTVWMWNADRGAYLNMFSGH----   81 (216)
Q Consensus        27 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~-------------------~~~~~v~i~d~~~~~~~~~~~~~----   81 (216)
                      ..++.++.||.|.-.|..+|+..-+++..  ...                   ..||.++.++..+|.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888889999999999999888877654  110                   15788888888777544333211    


Q ss_pred             CCCeeE---EEE-c----CCCcEEEEecCCCeEEEEeCCCCceeEEeecc
Q 043942           82 GSGLTC---GDF-T----TDGKTICTGSDNATLSIWNPKGGENFHAIRRS  123 (216)
Q Consensus        82 ~~~v~~---~~~-~----~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~  123 (216)
                      ..++..   ... .    ..+..+.+|+.++.+...|+++|+.+..+...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            111111   000 0    14568889999999999999999999988753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.71  E-value=0.011  Score=48.24  Aligned_cols=100  Identities=11%  Similarity=-0.005  Sum_probs=56.9

Q ss_pred             CeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-c-
Q 043942           84 GLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-D-  160 (216)
Q Consensus        84 ~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~-  160 (216)
                      ....|++.+. ++++++-...+.|.++++........+..               .......++++|.+.+|+.+.. . 
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~---------------~~~~P~giavDp~~g~ly~td~~~~  518 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------------QGSKPRAIVVDPVHGFMYWTDWGTP  518 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC---------------SSCCCCCEECCSSSSCCEECCCSSS
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC---------------CCCCcceEEEccCCCcEEEcccCCC
Confidence            3457788754 44555555678899999875443333221               1233456677775444333321 1 


Q ss_pred             CeE--------------EeeeCCEEEEEEecCCCeEE-EEeCCCcEEEEEccc
Q 043942          161 GKV--------------DGHIDAIQSLSVSAIRESLV-SVSVDGTARVFEIAE  198 (216)
Q Consensus       161 ~~i--------------~~~~~~i~~~~~~~~~~~l~-s~~~d~~v~vw~~~~  198 (216)
                      +.|              .........++|+|++..|+ +-+..+.|.++++..
T Consensus       519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            333              01123456899998765554 445567899998864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.71  E-value=0.15  Score=39.87  Aligned_cols=28  Identities=4%  Similarity=-0.160  Sum_probs=20.4

Q ss_pred             EEEEEEecCCCeE-EEEeCCCcEEEEEcc
Q 043942          170 IQSLSVSAIRESL-VSVSVDGTARVFEIA  197 (216)
Q Consensus       170 i~~~~~~~~~~~l-~s~~~d~~v~vw~~~  197 (216)
                      ...++|+|+|++| ++-+....|+.++..
T Consensus       312 p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          312 EFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            4689999999954 444556788886654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.66  E-value=0.042  Score=48.24  Aligned_cols=188  Identities=10%  Similarity=0.119  Sum_probs=105.5

Q ss_pred             EccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEEEECCC-cceeeeeecc----CC
Q 043942           22 FSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWMWNADR-GAYLNMFSGH----GS   83 (216)
Q Consensus        22 ~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i~d~~~-~~~~~~~~~~----~~   83 (216)
                      -+|..+.+|--. ..++.|+|+++...++....+..-+             .+..|+-|++.. ..+...+..|    ..
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~  151 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGC  151 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccC
Confidence            456666666544 6789999999888777777655533             888999999973 3555555555    34


Q ss_pred             CeeEEEEcCCCcEEEEec-------CCCeEEEEeCCCCceeEEeecccccccccceEEE-eeeecCeEEEEeC-CCCcEE
Q 043942           84 GLTCGDFTTDGKTICTGS-------DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMIC-TSLYDGVTCLSWP-GTSKYL  154 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~-~~~~~l  154 (216)
                      .|..-..+++.++++..+       -.|.+.+|..+.+.. +.+.+....+..  .... ......+.+.+.. ++|..|
T Consensus       152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~--~~~~~~~~~~~l~~f~~~~~~g~kL  228 (1630)
T 1xi4_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQ--FKMEGNAEESTLFCFAVRGQAGGKL  228 (1630)
T ss_pred             eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhhe--eccCCCCCCceEEEEEEecCCCceE
Confidence            677777788888877543       357788888774432 222221100000  0000 0011222232221 222211


Q ss_pred             EEe--cc----cCeE-----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942          155 VTG--CV----DGKV-----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF  213 (216)
Q Consensus       155 ~~~--~~----~~~i-----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~  213 (216)
                      -..  +.    .+..           ..-..-...+..++.-..+..-+.-|.++++|+.++..+..-...+-.+|
T Consensus       229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF  304 (1630)
T 1xi4_A          229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (1630)
T ss_pred             EEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence            111  00    0111           11123345666677666777778889999999999988765444444444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.62  E-value=0.053  Score=37.51  Aligned_cols=91  Identities=10%  Similarity=-0.034  Sum_probs=59.6

Q ss_pred             CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee------EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942           83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF------HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT  156 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  156 (216)
                      ..+..++|+|++.+.++  .++.++-.+..+....      ..+-.             . .-..-.++.|.|+|.+.++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~-------------~-Gw~~F~a~~fD~~G~LYav  104 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN-------------G-GWNQFQFLFFDPNGYLYAV  104 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC-------------S-CGGGCSEEEECTTSCEEEE
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc-------------c-ccccceEEEECCCCCEEEe
Confidence            36789999999987776  6777777776542211      11100             0 1112478889999998887


Q ss_pred             ecccCeEEee------------------e---CCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942          157 GCVDGKVDGH------------------I---DAIQSLSVSAIRESLVSVSVDGTARV  193 (216)
Q Consensus       157 ~~~~~~i~~~------------------~---~~i~~~~~~~~~~~l~s~~~d~~v~v  193 (216)
                        .||.+..+                  .   ..+..+.++|+|.+.+..  |+.++-
T Consensus       105 --~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          105 --SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             --ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             --CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence              55888111                  1   467999999999977766  777543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.60  E-value=0.25  Score=41.08  Aligned_cols=103  Identities=12%  Similarity=-0.022  Sum_probs=62.5

Q ss_pred             CCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-cc
Q 043942           83 SGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-VD  160 (216)
Q Consensus        83 ~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~  160 (216)
                      .....|++.+.++ ++++-...+.|.+.++........+..               .......|+++|...+|+... .+
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~---------------~l~~P~gIaVDp~~g~LYwtD~g~  535 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGT  535 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---------------TTCCEEEEEEETTTTEEEEEECSS
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC---------------CCCCcceEEEecCCCCEEEecCCC
Confidence            4567899987664 555556778999999884433332221               223467777777644443332 22


Q ss_pred             -CeE--------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEccccc
Q 043942          161 -GKV--------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEFR  200 (216)
Q Consensus       161 -~~i--------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~~  200 (216)
                       +.|              ...-.....|++++.+..|+.+ ...+.|...++....
T Consensus       536 ~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          536 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence             334              1122467899999876666555 445778888876533

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.45  E-value=0.27  Score=39.73  Aligned_cols=172  Identities=8%  Similarity=-0.074  Sum_probs=94.5

Q ss_pred             cceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCC---CCcc--------------cCcEEEEEECCCcceee
Q 043942           15 DSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGP---RGGI--------------EDSTVWMWNADRGAYLN   76 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~---~~~~--------------~~~~v~i~d~~~~~~~~   76 (216)
                      ..+..++|++.+..|. +-..++.|+.+++........+...   ..++              ..+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            3567899998655554 5556788999998765444444322   1111              33445555554322211


Q ss_pred             eeeccCCCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           77 MFSGHGSGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      .+...-.....++++|....|..+.  ..+.|...++.... ...+..               .-.....+++++++..|
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~---------------~~~~P~GlalD~~~~~L  180 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP---------------NVGRANGLTIDYAKRRL  180 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC---------------SCSSEEEEEEETTTTEE
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC---------------CCCCcceEEEccccCEE
Confidence            1222334578999998554554443  35678888876433 332222               23456777887765554


Q ss_pred             EEec-ccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          155 VTGC-VDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       155 ~~~~-~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      +.+. ..+.|             ........++++.. +..+++-...+.|...|..+++...
T Consensus       181 Y~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~  242 (628)
T 4a0p_A          181 YWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT  242 (628)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             EEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence            4443 23333             12223445677754 4444455457888888876665443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.38  E-value=0.29  Score=39.44  Aligned_cols=173  Identities=9%  Similarity=-0.066  Sum_probs=86.9

Q ss_pred             cceEEEEEccCCCEEEEE-cCCCcEEEEECCCCce-EEEEeCCCC---cc--------------cCcEEEEEECCCccee
Q 043942           15 DSFSSLAFSTDGQLLASG-GFHGLVQNRDTSSRNL-QCTVEGPRG---GI--------------EDSTVWMWNADRGAYL   75 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~~-~~~~~~~~~---~~--------------~~~~v~i~d~~~~~~~   75 (216)
                      ..+..++|++.+..|..+ ...+.|..+++..... ...+.....   ++              ..+.|.+.++......
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            356789999866655544 4467888888876532 222222111   11              3455555555533222


Q ss_pred             eeeeccCCCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942           76 NMFSGHGSGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                      ..+...-.....|+++|.+..|..+.  ..+.|...++. |.....+...              .-.....+++++++..
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~--------------~~~~P~Glald~~~~~  184 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINS--------------EIYWPNGLTLDYEEQK  184 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECS--------------SCSSEEEEEEETTTTE
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeC--------------CCCCCcEEEEEccCCE
Confidence            22222334567899988655554443  24567777766 3333322210              2344677888876554


Q ss_pred             EEEe-cccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          154 LVTG-CVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       154 l~~~-~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      |+.+ ...+.|              ........++++.++ ..+++-...+.|...|..+++...
T Consensus       185 LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          185 LYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             EEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred             EEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence            4443 333334              111122245566444 333444456788888887765443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.38  E-value=0.2  Score=37.40  Aligned_cols=155  Identities=14%  Similarity=0.159  Sum_probs=83.5

Q ss_pred             ceEEEEEccCCCEEEEEc------------CCCcEEEEECCCC--ceE-EEEeCC-CC-------cc-------------
Q 043942           16 SFSSLAFSTDGQLLASGG------------FHGLVQNRDTSSR--NLQ-CTVEGP-RG-------GI-------------   59 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~------------~d~~v~vwd~~~~--~~~-~~~~~~-~~-------~~-------------   59 (216)
                      ...++...|+|..+++++            .+|.|.++|..+.  +.. ..+.+. ..       ++             
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            455778888886666652            6899999998742  221 122221 00       00             


Q ss_pred             ------cCcEEEEEECCCc-c---eeeeeecc-CCCeeEEEEcCCCcEEEEecC-----------------CCeEEEEeC
Q 043942           60 ------EDSTVWMWNADRG-A---YLNMFSGH-GSGLTCGDFTTDGKTICTGSD-----------------NATLSIWNP  111 (216)
Q Consensus        60 ------~~~~v~i~d~~~~-~---~~~~~~~~-~~~v~~~~~~~~~~~l~t~~~-----------------d~~i~~wd~  111 (216)
                            .+.++.+|++... .   .+..+.+. -...+.+++.++|++.++...                 .+.+..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence                  1333444444321 1   12223222 235788999999988777541                 234444543


Q ss_pred             CCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cCeE----------------EeeeCCEEEEE
Q 043942          112 KGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV----------------DGHIDAIQSLS  174 (216)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i----------------~~~~~~i~~~~  174 (216)
                        ++ ...+..               .-...+.++|+||++.++.+.. .+.+                .......-.++
T Consensus       211 --~~-~~~~~~---------------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~  272 (355)
T 3sre_A          211 --ND-VRVVAE---------------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNIS  272 (355)
T ss_dssp             --TC-CEEEEE---------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEE
T ss_pred             --Ce-EEEeec---------------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEE
Confidence              22 121211               3456789999999987776543 4444                00123446677


Q ss_pred             Eec-CCCeEEEEeCC
Q 043942          175 VSA-IRESLVSVSVD  188 (216)
Q Consensus       175 ~~~-~~~~l~s~~~d  188 (216)
                      +++ +|++.+++..+
T Consensus       273 vD~e~G~lwva~~~~  287 (355)
T 3sre_A          273 VDPVTGDLWVGCHPN  287 (355)
T ss_dssp             ECTTTCCEEEEEESC
T ss_pred             EeCCCCcEEEEecCC
Confidence            777 47776655433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.32  E-value=0.26  Score=38.13  Aligned_cols=35  Identities=14%  Similarity=0.058  Sum_probs=25.7

Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN  116 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~  116 (216)
                      -.....|+|.|+|+++++-...+.|++++..+++.
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~   60 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence            34578999999999777755445788888765543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.30  E-value=0.16  Score=37.40  Aligned_cols=93  Identities=11%  Similarity=0.050  Sum_probs=59.4

Q ss_pred             CcEEEEEECC---Ccceeeeee--c-----------cCCCeeEEEEcCCCcEEEEecCC-CeEEEEeCCCCceeEEeecc
Q 043942           61 DSTVWMWNAD---RGAYLNMFS--G-----------HGSGLTCGDFTTDGKTICTGSDN-ATLSIWNPKGGENFHAIRRS  123 (216)
Q Consensus        61 ~~~v~i~d~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~t~~~d-~~i~~wd~~~~~~~~~~~~~  123 (216)
                      +..|..||+.   +++.+....  .           .......++..++|+..++++.- +.|...+.. ++.+..+...
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~  177 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWE  177 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEEC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeec
Confidence            4556666766   555543332  1           11247899999999999998888 888888877 3333333210


Q ss_pred             cccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942          124 SLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      .. +        .......+.++++|+|..|++....|.+
T Consensus       178 ~~-~--------~~~~~G~nGIv~~pdg~~Liv~~~~g~L  208 (334)
T 2p9w_A          178 SG-N--------GGQRPGYSGITFDPHSNKLIAFGGPRAL  208 (334)
T ss_dssp             CC-C--------SSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred             CC-C--------cccccCcceEEEeCCCCEEEEEcCCCeE
Confidence            00 0        0022346789999999988887667776

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.03  E-value=0.37  Score=37.25  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=25.6

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS   45 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~   45 (216)
                      +..+-..-...+.|+|.|+|+++++-...+.|++++..+
T Consensus        19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~   57 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPES   57 (454)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             EEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence            334433345678999999999887765444677666543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.77  E-value=0.4  Score=35.64  Aligned_cols=110  Identities=13%  Similarity=-0.002  Sum_probs=58.4

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD   93 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~   93 (216)
                      -.....++|.|+|+++++ ..++.|++++. +++  ..+              -++.      ...........|+++|+
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~--~~~--------------~~~~------v~~~g~~g~~gia~~pd   83 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK--KLV--------------ASFD------VANVGEAGLLGLALHPE   83 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE--EEE--------------EECC------CCCSTTCSEEEEEECTT
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc--eEe--------------eccc------eeecCCCceeeEEeCCC
Confidence            456789999999985555 44577777752 222  111              0110      01112345789999997


Q ss_pred             ---CcEEEEecC----C----CeEEEEeCCCCc--e--eEE-eecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942           94 ---GKTICTGSD----N----ATLSIWNPKGGE--N--FHA-IRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG  157 (216)
Q Consensus        94 ---~~~l~t~~~----d----~~i~~wd~~~~~--~--~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  157 (216)
                         +..|..+..    +    ..|..|+.....  .  ... +..           ...........++|.|+|.++++.
T Consensus        84 f~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~-----------~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           84 FPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG-----------IPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             TTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE-----------EECCSSCCCCCEEECTTSCEEEEC
T ss_pred             CCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEc-----------CCCCCCcCCceEEECCCCcEEEEE
Confidence               444444332    3    567777766441  1  011 110           000011234678999999877764


Q ss_pred             c
Q 043942          158 C  158 (216)
Q Consensus       158 ~  158 (216)
                      +
T Consensus       153 G  153 (354)
T 3a9g_A          153 G  153 (354)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.74  E-value=0.62  Score=37.57  Aligned_cols=124  Identities=6%  Similarity=-0.099  Sum_probs=69.2

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      .+.|+.+++........+...-.....+++.+. +++.++-+..+.|.+.++.... ...+...              .-
T Consensus       370 ~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~--------------~l  434 (619)
T 3s94_A          370 VRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISE--------------DL  434 (619)
T ss_dssp             TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECT--------------TC
T ss_pred             CCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEEC--------------CC
Confidence            344555555433222222222345678899864 4455565677889999887443 3333211              23


Q ss_pred             cCeEEEEeCCC-CcEEEEec-ccCeE--------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEcccc
Q 043942          140 DGVTCLSWPGT-SKYLVTGC-VDGKV--------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEF  199 (216)
Q Consensus       140 ~~v~~~~~~~~-~~~l~~~~-~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~  199 (216)
                      .....++++|. |.++++-. ....|              ...-.....+++++++..|..+. ..+.|...++...
T Consensus       435 ~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          435 EEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             CSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             CCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence            45677777775 44434321 12333              11234678899998766666554 4567888887543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.73  E-value=0.42  Score=35.51  Aligned_cols=112  Identities=13%  Similarity=0.067  Sum_probs=59.5

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD   93 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~   93 (216)
                      -.....++|.|+|+++++ ..++.|++++  +++. ..              +-++.      ...........++++|+
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~--------------~~~~~------v~~~g~~~p~gia~~pd   85 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-ST--------------YAELS------VYHRGESGLLGLALHPR   85 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EE--------------EEECC------CCCSTTCSEEEEEECTT
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cE--------------eecce------EeecCCCCceeEEECCC
Confidence            345679999999986665 4457777777  3321 00              00111      11112345789999998


Q ss_pred             ---CcEEEEecC-C-----CeEEEEeCCCCcee---EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           94 ---GKTICTGSD-N-----ATLSIWNPKGGENF---HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        94 ---~~~l~t~~~-d-----~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                         +..|..+.. .     +.|..++...+...   ..+......         .........++|.|+|.++++.+
T Consensus        86 f~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~---------~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           86 FPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPAR---------PHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCC---------TTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCC---------CCCCcCCceEEECCCCCEEEEEC
Confidence               444444332 2     67888887643211   111100000         00112336889999997666643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.69  E-value=0.37  Score=34.59  Aligned_cols=92  Identities=11%  Similarity=0.165  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCC-----CcEEEEECCCCc---eEEEEeCCCCcc---------------------cCcEEEEEECCCccee
Q 043942           25 DGQLLASGGFH-----GLVQNRDTSSRN---LQCTVEGPRGGI---------------------EDSTVWMWNADRGAYL   75 (216)
Q Consensus        25 ~~~~l~s~~~d-----~~v~vwd~~~~~---~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~~   75 (216)
                      +++.++.|+.+     ..+.+||..+.+   ....-..+....                     ....+.+||+.+.+-.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            56677777754     468899988776   333211111110                     2346777887765432


Q ss_pred             e--eeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceeE
Q 043942           76 N--MFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGENFH  118 (216)
Q Consensus        76 ~--~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~~  118 (216)
                      .  .+......-..+.+  +++.++.|+.+     ..+.+||+.+.+-..
T Consensus       142 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          142 MLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             EEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             ECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            2  22111111122222  67777777754     458889988765443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.67  E-value=0.98  Score=39.35  Aligned_cols=130  Identities=8%  Similarity=0.058  Sum_probs=69.6

Q ss_pred             cCcEEEEEECCCcceeeee-eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccc------cc-cccc
Q 043942           60 EDSTVWMWNADRGAYLNMF-SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL------EF-SLNY  131 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~------~~-~~~~  131 (216)
                      ..|.|++|++..++..... ....+++++++-- +|++++..  .+++++|++...+.+. ......      .. ....
T Consensus       862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~  937 (1158)
T 3ei3_A          862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKGD  937 (1158)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETT
T ss_pred             CceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEE-EEeeccccEEEEEEeccCC
Confidence            5688999988643322111 1245778887643 45544433  4789999998665433 111000      00 0011


Q ss_pred             eEEEeeeecCeEEEEeCCCCcEEEEecccCeEEeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          132 WMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      +.+...-...+.-+.|.++.+.|..-+.|    ....+++++.+-.++ .++.+..+|++.+.....
T Consensus       938 ~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D----~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          938 FILVGDLMRSVLLLAYKPMEGNFEEIARD----FNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEEESSBCEEEEEEETTTTEEEEEEEC----CSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             EEEEEEhhheEEEEEEEcCCCeEEEEEee----cccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            22222233344445554443333322222    244578888886554 566688899999987654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.49  E-value=0.42  Score=34.32  Aligned_cols=92  Identities=18%  Similarity=0.233  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCC-----CcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECCCcceee--
Q 043942           25 DGQLLASGGFH-----GLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNADRGAYLN--   76 (216)
Q Consensus        25 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~~~--   76 (216)
                      ++..++.|+.+     ..+.+||..+.+....-..+....                     .-..+.+||+.+.+-..  
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  140 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA  140 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence            55677777754     358889988765433222111111                     11356677776553222  


Q ss_pred             eeeccCCCeeEEEEcCCCcEEEEecCC-------CeEEEEeCCCCceeE
Q 043942           77 MFSGHGSGLTCGDFTTDGKTICTGSDN-------ATLSIWNPKGGENFH  118 (216)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-------~~i~~wd~~~~~~~~  118 (216)
                      .+.........+.+  +++.++.|+.+       ..+.+||+.+.+-..
T Consensus       141 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~  187 (302)
T 2xn4_A          141 PMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY  187 (302)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred             CCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence            12111111122222  56677777642       358889988765443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.43  E-value=0.55  Score=34.88  Aligned_cols=29  Identities=24%  Similarity=0.241  Sum_probs=21.3

Q ss_pred             ccceEEEEEccCCC-EEEEEcCCCcEEEEEC
Q 043942           14 KDSFSSLAFSTDGQ-LLASGGFHGLVQNRDT   43 (216)
Q Consensus        14 ~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~   43 (216)
                      -.....|+|.|+|+ ++++ ...|.|++++.
T Consensus        17 l~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~   46 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLIT-LRGGELRHWQA   46 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEE-ETTTEEEEEET
T ss_pred             CCCcEEEEEcCCCCEEEEE-eCCceEEEEeC
Confidence            44668999999998 6655 45677777763

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.21  E-value=0.65  Score=34.48  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=27.6

Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN  116 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~  116 (216)
                      -.....|+|.|+|+++++--..|.|++++..+++.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~   65 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK   65 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence            45578999999999777765589999998765553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.14  E-value=0.7  Score=34.37  Aligned_cols=124  Identities=15%  Similarity=0.225  Sum_probs=73.4

Q ss_pred             cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC----Cc---EEEEec-C--CCeEEEEeCC--CCceeEEeecc--cc
Q 043942           60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD----GK---TICTGS-D--NATLSIWNPK--GGENFHAIRRS--SL  125 (216)
Q Consensus        60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~t~~-~--d~~i~~wd~~--~~~~~~~~~~~--~~  125 (216)
                      ..+-+.+||+ +|+.++.+..  +.++.+..-|+    ++   ++++.. .  +++|.+|++.  ++ .+..+...  +.
T Consensus        48 k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~~~~~pv  123 (355)
T 3amr_A           48 KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMTDPDHPI  123 (355)
T ss_dssp             TTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECSCTTSCE
T ss_pred             CCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeeccccccCc
Confidence            4578999999 7888888753  56777777663    22   223333 3  5889999774  33 34444211  00


Q ss_pred             cccccceEEEeeeecCeEEEEe--CCC-Cc-EEEEecccCeE--------------------EeeeCCEEEEEEecCCCe
Q 043942          126 EFSLNYWMICTSLYDGVTCLSW--PGT-SK-YLVTGCVDGKV--------------------DGHIDAIQSLSVSAIRES  181 (216)
Q Consensus       126 ~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~~~~i--------------------~~~~~~i~~~~~~~~~~~  181 (216)
                      ..          ....+..+|+  +|. +. ++++...+|.+                    ......+..+..++....
T Consensus       124 ~t----------~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~  193 (355)
T 3amr_A          124 AT----------AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR  193 (355)
T ss_dssp             EC----------CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred             CC----------CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence            00          1133444555  553 32 45555555554                    223457788889888888


Q ss_pred             EEEEeCCCcEEEEEcc
Q 043942          182 LVSVSVDGTARVFEIA  197 (216)
Q Consensus       182 l~s~~~d~~v~vw~~~  197 (216)
                      |+.+-++.-|..++.+
T Consensus       194 Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEEETTTEEEEEECS
T ss_pred             EEEecccceEEEEeCC
Confidence            9999888666555543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.02  E-value=0.77  Score=34.24  Aligned_cols=125  Identities=13%  Similarity=0.111  Sum_probs=72.7

Q ss_pred             cCcEEEEEECCCc--ce-eeeeec-----cCCCeeEEEEcC--CCc--EEEEecC--CCeEEEEeCCCCcee----EEee
Q 043942           60 EDSTVWMWNADRG--AY-LNMFSG-----HGSGLTCGDFTT--DGK--TICTGSD--NATLSIWNPKGGENF----HAIR  121 (216)
Q Consensus        60 ~~~~v~i~d~~~~--~~-~~~~~~-----~~~~v~~~~~~~--~~~--~l~t~~~--d~~i~~wd~~~~~~~----~~~~  121 (216)
                      .+|.|.++|+.+.  +. ...+.+     .......+.+.+  ++.  ++++-..  +..+.+|++......    ..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999998742  21 112222     223567777755  343  3344333  567888777653221    1222


Q ss_pred             cccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-----------------cCeE-----------EeeeCCEEEE
Q 043942          122 RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-----------------DGKV-----------DGHIDAIQSL  173 (216)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------~~~i-----------~~~~~~i~~~  173 (216)
                      ..              .-...+.+.+.++|++.++...                 .|.+           ...-.....+
T Consensus       161 g~--------------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGi  226 (355)
T 3sre_A          161 HK--------------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGI  226 (355)
T ss_dssp             CT--------------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEE
T ss_pred             cC--------------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcc
Confidence            11              2234677777777776665431                 1223           2223456899


Q ss_pred             EEecCCCeEEEEe-CCCcEEEEEccc
Q 043942          174 SVSAIRESLVSVS-VDGTARVFEIAE  198 (216)
Q Consensus       174 ~~~~~~~~l~s~~-~d~~v~vw~~~~  198 (216)
                      +|+||++.|..+. ..+.|+.|++..
T Consensus       227 a~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          227 NISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             eECCCCCEEEEEeCCCCeEEEEEECC
Confidence            9999998776554 578999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.66  E-value=0.55  Score=34.92  Aligned_cols=31  Identities=13%  Similarity=0.054  Sum_probs=23.2

Q ss_pred             CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 043942           83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE  115 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~  115 (216)
                      .....++|.|+|+++++ ..++.|+++| .+++
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~   59 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK   59 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc
Confidence            45789999999985554 5569999997 3454

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.54  E-value=0.88  Score=32.68  Aligned_cols=91  Identities=8%  Similarity=0.071  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCC----CcEEEEECCCCceEEEEeCCCCcc----------------------cCcEEEEEECCCcceeee-
Q 043942           25 DGQLLASGGFH----GLVQNRDTSSRNLQCTVEGPRGGI----------------------EDSTVWMWNADRGAYLNM-   77 (216)
Q Consensus        25 ~~~~l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~~~----------------------~~~~v~i~d~~~~~~~~~-   77 (216)
                      ++..++.|+.+    ..+.+||..+.+....-..+....                      ....+.+||+.+.+-... 
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~  134 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP  134 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence            55677777754    568889988875443322222111                      124466777766532221 


Q ss_pred             -eeccCCCeeEEEEcCCCcEEEEecC---------CCeEEEEeCCCCcee
Q 043942           78 -FSGHGSGLTCGDFTTDGKTICTGSD---------NATLSIWNPKGGENF  117 (216)
Q Consensus        78 -~~~~~~~v~~~~~~~~~~~l~t~~~---------d~~i~~wd~~~~~~~  117 (216)
                       +......-..+.  -+++.++.|+.         -..+.+||+.+.+-.
T Consensus       135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~  182 (306)
T 3ii7_A          135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT  182 (306)
T ss_dssp             CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred             CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE
Confidence             111111112222  25677777763         345888998877543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.37  E-value=0.83  Score=36.33  Aligned_cols=85  Identities=13%  Similarity=0.088  Sum_probs=49.4

Q ss_pred             cceEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942           15 DSFSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD   93 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~   93 (216)
                      .....+..+|||++++.++. +.++.++|++......         .++   +.+.+ .......+ -.-...-.+|.++
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~---------~~k---~~~~~-~~~~ae~e-~GlGPlHt~Fd~~  388 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLF---------AGK---LADPR-DVIVGEPE-LGLGPLHTTFDGR  388 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHH---------TTC---CSCGG-GGEEECCB-CCSCEEEEEECSS
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhh---------hcc---ccCcc-cceEeecc-CCCcccEEEECCC
Confidence            34567899999999888775 4455555543211000         000   00000 01112222 2335678899999


Q ss_pred             CcEEEEecCCCeEEEEeCCC
Q 043942           94 GKTICTGSDNATLSIWNPKG  113 (216)
Q Consensus        94 ~~~l~t~~~d~~i~~wd~~~  113 (216)
                      |....|.--|..|.-|++..
T Consensus       389 G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          389 GNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             SEEEEEETTTTEEEEEEHHH
T ss_pred             CceEeeeeecceEEEEeccH
Confidence            97667777999999999974

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.34  E-value=0.87  Score=33.76  Aligned_cols=27  Identities=11%  Similarity=0.165  Sum_probs=21.5

Q ss_pred             CCeeEEEEcCCCcEEEEecCCCeEEEEe
Q 043942           83 SGLTCGDFTTDGKTICTGSDNATLSIWN  110 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd  110 (216)
                      .....++|.|+|+++++ ..++.|++++
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~   57 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR   57 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence            45679999999985555 5669999998

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.94  E-value=1.7  Score=33.69  Aligned_cols=30  Identities=20%  Similarity=-0.001  Sum_probs=21.6

Q ss_pred             ccceEEEEEccCCC-EEEEEcCCCcEEEEEC
Q 043942           14 KDSFSSLAFSTDGQ-LLASGGFHGLVQNRDT   43 (216)
Q Consensus        14 ~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~   43 (216)
                      -...+.|+|.|+|. .++.+...|.|++++.
T Consensus        13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~   43 (463)
T 2wg3_C           13 LRQPVGALHSGDGSQRLFILEKEGYVKILTP   43 (463)
T ss_dssp             ESSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred             CCCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence            34567999999985 4444566788888864

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=93.32  E-value=1.7  Score=31.73  Aligned_cols=95  Identities=12%  Similarity=0.134  Sum_probs=54.7

Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      ....+..+++.|++.+++.+...+..+-+|-. +..-..+...              ....+..+.+.+++..++.+. +
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~-~  224 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRT--------------TSRRLHNMGFTPDGRLWMIVN-G  224 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECC--------------SSSCEEEEEECTTSCEEEEET-T
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCC--------------CCCccceeEECCCCCEEEEeC-C
Confidence            34568889999998888777554444444421 2221112110              345667778888777655432 2


Q ss_pred             CeE--------------E-e---eeCCEEEEEEecCCCeEEEEeCCCcEE
Q 043942          161 GKV--------------D-G---HIDAIQSLSVSAIRESLVSVSVDGTAR  192 (216)
Q Consensus       161 ~~i--------------~-~---~~~~i~~~~~~~~~~~l~s~~~d~~v~  192 (216)
                      |.+              . .   ....+..+.+.++++.++++ .++.+.
T Consensus       225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~  273 (327)
T 2xbg_A          225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL  273 (327)
T ss_dssp             TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE
T ss_pred             ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE
Confidence            222              0 1   12347889998887766655 467663

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.83  E-value=0.99  Score=33.49  Aligned_cols=30  Identities=13%  Similarity=0.145  Sum_probs=22.6

Q ss_pred             CCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942           83 SGLTCGDFTTDGKTICTGSDNATLSIWNPK  112 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~  112 (216)
                      .....|+|.|+|+.++++...+.|++++..
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            457899999999834445567899999853

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=92.71  E-value=2.4  Score=31.88  Aligned_cols=138  Identities=6%  Similarity=0.008  Sum_probs=85.2

Q ss_pred             cCcEEEEEECCCc--ceeeeeecc------CCCeeEEEEc---CC----CcEEEEe-cCCCeEEEEeCCCCceeEEeecc
Q 043942           60 EDSTVWMWNADRG--AYLNMFSGH------GSGLTCGDFT---TD----GKTICTG-SDNATLSIWNPKGGENFHAIRRS  123 (216)
Q Consensus        60 ~~~~v~i~d~~~~--~~~~~~~~~------~~~v~~~~~~---~~----~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~  123 (216)
                      ..-.|.+||+.+.  +.++++.-.      ...+..+++.   |+    +.++..+ +....|.|+|+.+++.-.... .
T Consensus       121 ~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~-~  199 (381)
T 3q6k_A          121 HRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH-P  199 (381)
T ss_dssp             CCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC-G
T ss_pred             CCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc-C
Confidence            4567889999998  888776532      3457788887   22    2333333 356789999999998776553 2


Q ss_pred             cccccccceEEEee----eecCeEEEEeCCC----CcEEEEecccC-eE-------------------EeeeC---CEEE
Q 043942          124 SLEFSLNYWMICTS----LYDGVTCLSWPGT----SKYLVTGCVDG-KV-------------------DGHID---AIQS  172 (216)
Q Consensus       124 ~~~~~~~~~~~~~~----~~~~v~~~~~~~~----~~~l~~~~~~~-~i-------------------~~~~~---~i~~  172 (216)
                      ...+.........+    ....+..++++|+    ++.|+-....+ .+                   .+..+   .-..
T Consensus       200 ~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~  279 (381)
T 3q6k_A          200 TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA  279 (381)
T ss_dssp             GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred             CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence            22222111111122    2468999999997    66666444333 22                   22222   2334


Q ss_pred             EEEe-cCCCeEEEEeCCCcEEEEEccc
Q 043942          173 LSVS-AIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       173 ~~~~-~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ++.+ .+|.++++--..+.|..|+...
T Consensus       280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          280 LAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            5675 5787777777789999999865

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.70  E-value=3.3  Score=33.45  Aligned_cols=171  Identities=9%  Similarity=-0.013  Sum_probs=89.5

Q ss_pred             cceEEEEEccCCCEEEEE-cCCCcEEEEECCCCceEEEEeC---------CCCcc--------------cCcEEEEEECC
Q 043942           15 DSFSSLAFSTDGQLLASG-GFHGLVQNRDTSSRNLQCTVEG---------PRGGI--------------EDSTVWMWNAD   70 (216)
Q Consensus        15 ~~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~---------~~~~~--------------~~~~v~i~d~~   70 (216)
                      ..+..++|.+..+.|.-+ ...+.|+.+++........+..         ...++              ..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            457789999866555544 4467788888765443322221         01111              33444455554


Q ss_pred             Ccceeeee-eccCCCeeEEEEcC-CCcEEEEecCCC--eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           71 RGAYLNMF-SGHGSGLTCGDFTT-DGKTICTGSDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        71 ~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~t~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                       ++....+ .........|++.| +|..+.+-....  .|...++. |.....+...              .-...+.++
T Consensus       420 -G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~--------------~l~~P~gla  483 (628)
T 4a0p_A          420 -GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFS--------------GLSKPIALA  483 (628)
T ss_dssp             -SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECS--------------SCSCEEEEE
T ss_pred             -CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEec--------------cCCCccEEE
Confidence             3332232 22345688999999 555555533332  57777766 4433333211              223456777


Q ss_pred             eCCCCcEEEEec-ccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          147 WPGTSKYLVTGC-VDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       147 ~~~~~~~l~~~~-~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      ++++...|+.+. ..+.|              ........+++... +..+.+-...+.|...|..+++..
T Consensus       484 ~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~  553 (628)
T 4a0p_A          484 LDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGR  553 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCC
T ss_pred             EeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCc
Confidence            777655444432 23333              11223456677644 444444445677777777665543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.16  E-value=2.9  Score=35.68  Aligned_cols=39  Identities=10%  Similarity=0.028  Sum_probs=33.9

Q ss_pred             CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .+.+++..++..++++-+.|+++|+|++.+++.+.+...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            567778888888999999999999999999998887654

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=92.11  E-value=2.4  Score=30.34  Aligned_cols=108  Identities=11%  Similarity=0.063  Sum_probs=59.8

Q ss_pred             CCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           82 GSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        82 ~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      ...|..+-... +...++..+.+|.++-..+..-. ..  ..........       ..+.+..+....+...++..+.+
T Consensus        67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~--~~G~~~i~lk-------egD~l~~~~~~~~~~~ill~T~~  136 (276)
T 3no0_A           67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YK--AQGMPIIKLT-------EGDEVVSIASSVDETHILLFTKK  136 (276)
T ss_dssp             TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TC--STTEECSCCC-------TTCCEEEEEECCSSCEEEEEETT
T ss_pred             CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hh--cCCeEEEecC-------CCCEEEEEEEeCCCCEEEEEECC
Confidence            34455443321 46788889999999988865432 10  0000000000       23444444444444456666666


Q ss_pred             CeE----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          161 GKV----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       161 ~~i----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      |.+                      ......|..+...+++.+++..+..|.++...+...
T Consensus       137 G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~  197 (276)
T 3no0_A          137 GRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI  197 (276)
T ss_dssp             SEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred             CEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence            665                      111245666655566677888888999888887653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=91.85  E-value=3.6  Score=31.84  Aligned_cols=151  Identities=11%  Similarity=0.125  Sum_probs=89.4

Q ss_pred             CCcEEEEECCCCceEEEEeCC--------CCcc----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC
Q 043942           35 HGLVQNRDTSSRNLQCTVEGP--------RGGI----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD  102 (216)
Q Consensus        35 d~~v~vwd~~~~~~~~~~~~~--------~~~~----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~  102 (216)
                      +..|.|-|+.+++....-...        ...+    ...++.++|+++...+..+.- ...|.--.|-.+.. |+..+ 
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~-l~lVT-  123 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-  123 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTE-EEEEC-
T ss_pred             CCeEEEEECCCCCcceecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-CCCceEEEecCCCe-EEEEc-
Confidence            347888999886544332221        1222    789999999999988888774 45677778865444 33332 


Q ss_pred             CCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec---ccCeE---------------
Q 043942          103 NATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC---VDGKV---------------  163 (216)
Q Consensus       103 d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~i---------------  163 (216)
                      +..|+-|++... .+.+.+.....-           ....|.....+++.++++..+   .++.+               
T Consensus       124 ~taVyHWsi~~~s~P~kvFdR~~~L-----------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ  192 (494)
T 1bpo_A          124 DNAVYHWSMEGESQPVKMFDRHSSL-----------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ  192 (494)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGG-----------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE
T ss_pred             CCeeEEecccCCCCchhheecchhc-----------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc
Confidence            567999999743 344555432111           235677777788888876543   34544               


Q ss_pred             --EeeeCCEEEEEEecC---CCeEEEEeCC---CcEEEEEcccc
Q 043942          164 --DGHIDAIQSLSVSAI---RESLVSVSVD---GTARVFEIAEF  199 (216)
Q Consensus       164 --~~~~~~i~~~~~~~~---~~~l~s~~~d---~~v~vw~~~~~  199 (216)
                        .+|......+...-+   .+.++.+...   ++++|-++...
T Consensus       193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~  236 (494)
T 1bpo_A          193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP  236 (494)
T ss_dssp             EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC
T ss_pred             hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence              444443333333211   1234444332   78999988543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.74  E-value=2.7  Score=30.21  Aligned_cols=90  Identities=12%  Similarity=0.125  Sum_probs=46.2

Q ss_pred             CCCEEEEEcC----C-----CcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECCCcce
Q 043942           25 DGQLLASGGF----H-----GLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNADRGAY   74 (216)
Q Consensus        25 ~~~~l~s~~~----d-----~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~   74 (216)
                      ++++++.|+.    +     ..+.+||+.+.+....-..+....                     .-..+.+||+.+.+-
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  149 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW  149 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence            5566777765    2     468888988765333211111110                     123466677765432


Q ss_pred             ee--eeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 043942           75 LN--MFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGEN  116 (216)
Q Consensus        75 ~~--~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~  116 (216)
                      ..  .+......-..+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus       150 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          150 HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence            21  11111111122222  56777777654     4588888887654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=91.23  E-value=4.4  Score=31.72  Aligned_cols=36  Identities=14%  Similarity=0.148  Sum_probs=26.6

Q ss_pred             CCEEEEEEecC-CCeEEEEeCCCcEEEEEccccccee
Q 043942          168 DAIQSLSVSAI-RESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       168 ~~i~~~~~~~~-~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      .....++++++ |.++++-.....|+.++++......
T Consensus       444 ~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          444 RDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             CCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            45789999997 7777777778899999987655443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.96  E-value=1.2  Score=37.95  Aligned_cols=39  Identities=18%  Similarity=0.093  Sum_probs=34.0

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG   54 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~   54 (216)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            467778888888999999999999999999999887754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.69  E-value=6.8  Score=31.38  Aligned_cols=75  Identities=15%  Similarity=0.018  Sum_probs=50.3

Q ss_pred             EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------------------------------c
Q 043942           28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------------------------------E   60 (216)
Q Consensus        28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------------------------------~   60 (216)
                      .|.||+..|.|+|+-+.+++.+..+..-....                                               .
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            37899999999999999999999886533222                                               4


Q ss_pred             CcEEEEEECCCcceeeeeec-cCCCeeEEEEc--CCCcEEEEecC
Q 043942           61 DSTVWMWNADRGAYLNMFSG-HGSGLTCGDFT--TDGKTICTGSD  102 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~t~~~  102 (216)
                      +..|-..++..-++-+.++- ....+..++|-  |+..+++.++.
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e  196 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAE  196 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEEC
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecce
Confidence            44455555554444333332 23567788886  67778877764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.62  E-value=6  Score=30.67  Aligned_cols=30  Identities=13%  Similarity=0.160  Sum_probs=23.3

Q ss_pred             CCeeEEEEcCCCc-EEEEecCCCeEEEEeCC
Q 043942           83 SGLTCGDFTTDGK-TICTGSDNATLSIWNPK  112 (216)
Q Consensus        83 ~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~  112 (216)
                      .....|+|.|++. .++++...|.|++++..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            4467999999996 45556788999999754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.59  E-value=4.1  Score=29.25  Aligned_cols=90  Identities=13%  Similarity=0.163  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCC-----CcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECCCcceee--
Q 043942           25 DGQLLASGGFH-----GLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNADRGAYLN--   76 (216)
Q Consensus        25 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~~~--   76 (216)
                      +++.++.|+.+     ..+.+||+.+.+....-..+....                     ....+.+||+.+.+-..  
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  200 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT  200 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC
Confidence            55666776643     357888887764332211111110                     13456677776543221  


Q ss_pred             eeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 043942           77 MFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGEN  116 (216)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~  116 (216)
                      .+......-..+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus       201 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          201 AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            11111111222222  56777777654     4588888876643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.84  E-value=4.9  Score=28.63  Aligned_cols=90  Identities=22%  Similarity=0.292  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCCC-----cEEEEECCCCceEEEEeCCCCcc------c-----------------CcEEEEEECCCcceee
Q 043942           25 DGQLLASGGFHG-----LVQNRDTSSRNLQCTVEGPRGGI------E-----------------DSTVWMWNADRGAYLN   76 (216)
Q Consensus        25 ~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~~~------~-----------------~~~v~i~d~~~~~~~~   76 (216)
                      +++.++.|+.++     .+.+||+.+.+....-..+....      .                 -..+.+||+.+.+-..
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~  187 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY  187 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence            566777777553     47788887765433221111110      1                 2446777776553222


Q ss_pred             --eeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 043942           77 --MFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGEN  116 (216)
Q Consensus        77 --~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~  116 (216)
                        .+.........+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus       188 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          188 IAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             CCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence              12111111122222  56777777754     3577888876653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.49  E-value=5.2  Score=28.74  Aligned_cols=54  Identities=7%  Similarity=0.128  Sum_probs=27.9

Q ss_pred             cEEEEEECCCcceee--eeeccCCCeeEEEEcCCCcEEEEecCCC-----eEEEEeCCCCcee
Q 043942           62 STVWMWNADRGAYLN--MFSGHGSGLTCGDFTTDGKTICTGSDNA-----TLSIWNPKGGENF  117 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~t~~~d~-----~i~~wd~~~~~~~  117 (216)
                      ..+.+||+.+.+-..  .+......-..+.+  +++.++.|+.++     .+.+||+.+.+-.
T Consensus       165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          165 NKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            456777776553221  11111111122222  567777777543     4788888876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=87.94  E-value=5.7  Score=28.33  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCC------CcEEEEECCCCceEEEEeCCCCcc---------------------c----CcEEEEEECCCcc
Q 043942           25 DGQLLASGGFH------GLVQNRDTSSRNLQCTVEGPRGGI---------------------E----DSTVWMWNADRGA   73 (216)
Q Consensus        25 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~---------------------~----~~~v~i~d~~~~~   73 (216)
                      +++.++.|+.+      ..+.+||..+.+....-..+....                     .    -..+.+||+.+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~  180 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET  180 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence            56677777765      458899988775433221111111                     1    4557777877653


Q ss_pred             eeee--eeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 043942           74 YLNM--FSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGEN  116 (216)
Q Consensus        74 ~~~~--~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~  116 (216)
                      -...  +......- ++... +++.++.|+.+     ..+.+||+.+.+-
T Consensus       181 W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  228 (306)
T 3ii7_A          181 WTELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEW  228 (306)
T ss_dssp             EEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred             EEECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence            2211  11111111 22222 56777777643     3578888876643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=87.28  E-value=6.2  Score=28.03  Aligned_cols=91  Identities=13%  Similarity=0.183  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCC-----CcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECCCcceeee-
Q 043942           25 DGQLLASGGFH-----GLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNADRGAYLNM-   77 (216)
Q Consensus        25 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~~~~-   77 (216)
                      +++.++.|+.+     ..+.+||+.+.+....-..+....                     ....+.+||+.+.+-... 
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  191 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT  191 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence            56677777654     358889988775444322222111                     134566777765533221 


Q ss_pred             -eeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCcee
Q 043942           78 -FSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGENF  117 (216)
Q Consensus        78 -~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~  117 (216)
                       +......-..+.+  +++.++.|+.+     ..+.+||+.+.+-.
T Consensus       192 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          192 PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence             1111111122222  56777777754     45888888876543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=87.24  E-value=6.6  Score=35.29  Aligned_cols=109  Identities=11%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             CCcEEEEECCCCceEEEEeC--------CCCcc----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC
Q 043942           35 HGLVQNRDTSSRNLQCTVEG--------PRGGI----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD  102 (216)
Q Consensus        35 d~~v~vwd~~~~~~~~~~~~--------~~~~~----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~  102 (216)
                      ...|.|-|+.+++.+..-..        +...+    ...++.|+|+++...+..+.- ...|.--.|-.+...-+++  
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT--  123 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT--  123 (1630)
T ss_pred             CceEEEEECCCCCCcccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc--
Confidence            34788888887654422211        11111    788899999998887777663 4567777886544433332  


Q ss_pred             CCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942          103 NATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG  157 (216)
Q Consensus       103 d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  157 (216)
                      +..|+-|++... .+...+...+.-           ....|..-..+++.++++..
T Consensus       124 ~~aVyHW~~~~~s~P~k~fdR~~~L-----------~~~QIinY~~d~~~kW~~l~  168 (1630)
T 1xi4_A          124 DNAVYHWSMEGESQPVKMFDRHSSL-----------AGCQIINYRTDAKQKWLLLT  168 (1630)
T ss_pred             CCeEEEeccCCCCccHHHHhcchhc-----------ccCeeEEeeeCCCCCeEEEE
Confidence            457999999742 222223221000           24567777778888877643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=87.04  E-value=6.7  Score=28.16  Aligned_cols=53  Identities=11%  Similarity=0.011  Sum_probs=27.9

Q ss_pred             cEEEEEECCCcceee--eeeccCCCeeEEEEcCCCcEEEEecC-C-----CeEEEEeCCCCce
Q 043942           62 STVWMWNADRGAYLN--MFSGHGSGLTCGDFTTDGKTICTGSD-N-----ATLSIWNPKGGEN  116 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~t~~~-d-----~~i~~wd~~~~~~  116 (216)
                      ..+.+||+.+.+-..  .+......- +++. .+++.++.|+. +     ..+.+||+.+.+-
T Consensus       117 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A          117 DSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred             ceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence            456777777653221  111111111 2222 35677777775 2     4588899887654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=86.17  E-value=7.6  Score=27.93  Aligned_cols=90  Identities=16%  Similarity=0.186  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCC-------CcEEEEECCCCceEEEEeCCCC------cc----------------cCcEEEEEECCCccee
Q 043942           25 DGQLLASGGFH-------GLVQNRDTSSRNLQCTVEGPRG------GI----------------EDSTVWMWNADRGAYL   75 (216)
Q Consensus        25 ~~~~l~s~~~d-------~~v~vwd~~~~~~~~~~~~~~~------~~----------------~~~~v~i~d~~~~~~~   75 (216)
                      +++.++.|+.+       ..+.+||..+.+....-..+..      ..                .-..+.+||+.+.+-.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~  188 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK  188 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence            45666777653       2477888877654332111111      00                1234777777765322


Q ss_pred             e--eeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 043942           76 N--MFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGEN  116 (216)
Q Consensus        76 ~--~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~  116 (216)
                      .  .+......-..+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus       189 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          189 DLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             EECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             ECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            1  11111111122222  56777777643     3467788776653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=84.37  E-value=9.4  Score=27.42  Aligned_cols=26  Identities=31%  Similarity=0.597  Sum_probs=17.6

Q ss_pred             CCCcEEEEecC------CCeEEEEeCCCCcee
Q 043942           92 TDGKTICTGSD------NATLSIWNPKGGENF  117 (216)
Q Consensus        92 ~~~~~l~t~~~------d~~i~~wd~~~~~~~  117 (216)
                      .+++.++.|+.      -..+.+||+.+.+-.
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~  188 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK  188 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence            36677777764      245889998877543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=84.30  E-value=6.5  Score=31.58  Aligned_cols=59  Identities=19%  Similarity=0.162  Sum_probs=37.8

Q ss_pred             eeEEEEcCCCcEEEEecCC------------CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           85 LTCGDFTTDGKTICTGSDN------------ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      .--|+|+|.|++++.-..+            ..+.+.+..+++....+...              ...+++.++|+||++
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P--------------~gaE~TG~~fspDg~  543 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--------------IGCEVTGISFSPDQK  543 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC--------------TTCEEEEEEECTTSS
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC--------------CCccCcCeeECCCCC
Confidence            3468899999876654322            23555565656544433321              456788899999988


Q ss_pred             EEEEe
Q 043942          153 YLVTG  157 (216)
Q Consensus       153 ~l~~~  157 (216)
                      .|++.
T Consensus       544 tlfvn  548 (592)
T 3zwu_A          544 TLFVG  548 (592)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.18  E-value=1.4  Score=38.33  Aligned_cols=39  Identities=10%  Similarity=0.028  Sum_probs=32.9

Q ss_pred             CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .+.+++..++..++++-+.|+++|+|++.+++.+.+...
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence            445666677888999999999999999999999887664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.78  E-value=1.3  Score=38.48  Aligned_cols=39  Identities=18%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG   54 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~   54 (216)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence            344566667788999999999999999999998887654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=81.82  E-value=3.5  Score=33.82  Aligned_cols=37  Identities=16%  Similarity=-0.001  Sum_probs=30.6

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG   54 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~   54 (216)
                      .|.++.+  +..++++-+.|.++|+|++.+++++.+...
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            4555554  467999999999999999999998888766

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=81.61  E-value=3.3  Score=33.99  Aligned_cols=37  Identities=16%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .|.++.+  +..++++-+.|+++|+|++++++.+.....
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            4555554  477999999999999999999998887766

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=81.03  E-value=14  Score=26.99  Aligned_cols=16  Identities=13%  Similarity=0.191  Sum_probs=11.2

Q ss_pred             CcEEEEECCCCceEEE
Q 043942           36 GLVQNRDTSSRNLQCT   51 (216)
Q Consensus        36 ~~v~vwd~~~~~~~~~   51 (216)
                      ..+.+||..+.+....
T Consensus       168 ~~v~~yd~~~~~W~~~  183 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYA  183 (357)
T ss_dssp             CEEEEEETTTTEEEEE
T ss_pred             ccEEEEeCCCCcEEEC
Confidence            4688999988754443

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=80.30  E-value=16  Score=29.23  Aligned_cols=60  Identities=20%  Similarity=0.171  Sum_probs=38.8

Q ss_pred             CeeEEEEcCCCcEEEEecC------------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942           84 GLTCGDFTTDGKTICTGSD------------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS  151 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~~------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  151 (216)
                      ....|.|.++|.+.+....            ...+..++..+++....+...              ....++.++|+||+
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P--------------~~aEpnGiafSPD~  542 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--------------IGCEVTGISFSPDQ  542 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC--------------TTCEEEEEEECTTS
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC--------------CCccccCCEECCCC
Confidence            4567999999987774321            125666666666654433210              23567899999999


Q ss_pred             cEEEEe
Q 043942          152 KYLVTG  157 (216)
Q Consensus       152 ~~l~~~  157 (216)
                      +.|++.
T Consensus       543 ktLfV~  548 (592)
T 4a9v_A          543 KTLFVG  548 (592)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.4 bits (168), Expect = 1e-14
 Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 27/151 (17%)

Query: 58  GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF 117
           G  D++  +W+   G     F+GH S +    F  +G    TGSD+AT  +++ +  +  
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261

Query: 118 HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------- 163
                              ++  G+T +S+  + + L+ G  D                 
Sbjct: 262 M-------------TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 164 DGHIDAIQSLSVSAIRESLVSVSVDGTARVF 194
            GH + +  L V+    ++ + S D   +++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.8 bits (156), Expect = 4e-13
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 18/128 (14%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG--- 57
           + +G       GH+   +++ F  +G   A+G      +  D  +     T         
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 58  ---------------GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD 102
                          G +D    +W+A +     + +GH + ++C   T DG  + TGS 
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

Query: 103 NATLSIWN 110
           ++ L IWN
Sbjct: 333 DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.5 bits (119), Expect = 3e-08
 Identities = 27/201 (13%), Positives = 51/201 (25%), Gaps = 18/201 (8%)

Query: 12  GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADR 71
           GH     ++ + TD +LL S    G +   D+ + N    +      +            
Sbjct: 53  GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 72  GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNY 131
                        L   +          G              +   +   ++       
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 132 WMICTSLY----DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSL 173
               T+ +      V  LS    ++  V+G  D                  GH   I ++
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 174 SVSAIRESLVSVSVDGTARVF 194
                  +  + S D T R+F
Sbjct: 233 CFFPNGNAFATGSDDATCRLF 253

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 4e-14
 Identities = 31/209 (14%), Positives = 69/209 (33%), Gaps = 35/209 (16%)

Query: 1   INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
           +  G       GH++    +  + DG L+AS      V+    +++  +  +   R  +E
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 61  DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
             +    ++             +G         G  + +GS + T+ +W+   G     +
Sbjct: 190 CISWAPESS------YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243

Query: 121 RRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGH 166
                              + V  + +    K++++   D  +              + H
Sbjct: 244 VGHD---------------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288

Query: 167 IDAIQSLSVSAIRESLVSVSVDGTARVFE 195
              + SL        +V+ SVD T +V+E
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 1e-08
 Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 19/160 (11%)

Query: 60  EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA 119
            D T+ MW    G  +  F+GH   +       DG  I + S++ T+ +W     E    
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180

Query: 120 IR-----RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------- 163
           +R        + ++        S   G           +L++G  D  +           
Sbjct: 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240

Query: 164 ---DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200
               GH + ++ +   +  + ++S + D T RV++    R
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 6e-07
 Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 37/194 (19%)

Query: 12  GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADR 71
           GH+   + + F     ++ S                            ED+T+ +W+ + 
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSAS--------------------------EDATIKVWDYET 48

Query: 72  GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI-----RRSSLE 126
           G +     GH   +    F   GK + + S + T+ +W+ +G E    +       SS+ 
Sbjct: 49  GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 108

Query: 127 FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVS 186
              N   I ++  D    +    T   + T        GH + ++ +  +     + S S
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT------GHREWVRMVRPNQDGTLIASCS 162

Query: 187 VDGTARVFEIAEFR 200
            D T RV+ +A   
Sbjct: 163 NDQTVRVWVVATKE 176

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 78  FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS 137
            SGH S +T   F      + + S++AT+ +W+ + G+    ++  + +   +     + 
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT-DSVQDISFDHSG 71

Query: 138 LYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197
                                    + GH   + S+S+    + +VS S D T +++E+ 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 198 EFR 200
              
Sbjct: 132 TGY 134

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (134), Expect = 4e-10
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 30/166 (18%)

Query: 58  GIEDSTVWMWNADRG-------AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
           G  D  V +W+++ G       +     +GH   +    FT DG+++ +GS + ++ +WN
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 111 PKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------- 163
            +   N    +  +       ++      D V  ++     +Y+++G  D  V       
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

Query: 164 -------DGHIDAIQSL------SVSAIRESLVSVSVDGTARVFEI 196
                   GH +++ S+      S+        + S D  AR+++ 
Sbjct: 340 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 8e-10
 Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 23/152 (15%)

Query: 12  GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADR 71
           GHKDS  S+ F+ DGQ + SG     V+  +  + N +                    + 
Sbjct: 252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK--------------SDSKTPNS 297

Query: 72  GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNY 131
           G     + GH   +     T + + I +GS +  +  W+ K G     ++          
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 357

Query: 132 WMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163
                         S         TG  D K 
Sbjct: 358 V---------ANGSSLGPEYNVFATGSGDCKA 380

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 40/240 (16%), Positives = 72/240 (30%), Gaps = 59/240 (24%)

Query: 11  LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNAD 70
           L H      + FS DG+ LA+G  +   Q    S  +L   +       +D         
Sbjct: 59  LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL----- 112

Query: 71  RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL------------------------ 106
                +        +    F+ DGK + TG+++  +                        
Sbjct: 113 ---NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169

Query: 107 ----SIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK 162
               S      G     +R   L       +  +      T    PG  KY+  G +D  
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228

Query: 163 V---------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201
           V                      GH D++ S+  +   +S+VS S+D + +++ +     
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 42/232 (18%), Positives = 73/232 (31%), Gaps = 50/232 (21%)

Query: 12  GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS----------------SRNLQCTVEGP 55
                  S+ FS DG+ LA+G    L++  D                  S +   + +  
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 56  RGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE 115
             G  D TV +W+   G      S      T      DGK I  GS +  + +W+ + G 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 116 NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------------ 163
               +   +           T   D V  + +    + +V+G +D  V            
Sbjct: 239 LVERLDSENESG--------TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290

Query: 164 --------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201
                          GH D + S++ +   E ++S S D     ++      
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 4e-07
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 27/98 (27%)

Query: 13  HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRG 72
           H+    SL F+  G+   S G                          +D+ +  W    G
Sbjct: 264 HESCVLSLKFAYCGKWFVSTG--------------------------KDNLLNAWRTPYG 297

Query: 73  AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
           A +       S +   D + D K I TGS +   +++ 
Sbjct: 298 ASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-06
 Identities = 17/99 (17%), Positives = 24/99 (24%), Gaps = 16/99 (16%)

Query: 65  WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS 124
                           H S +    F   GK   +   +  L+ W    G +    + S 
Sbjct: 248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES- 306

Query: 125 LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163
                            V         KY+VTG  D K 
Sbjct: 307 ---------------SSVLSCDISVDDKYIVTGSGDKKA 330

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 32/143 (22%)

Query: 11  LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNAD 70
           L H +   ++  S   + + +GG                              V +W+  
Sbjct: 48  LNHGEVVCAVTISNPTRHVYTGG---------------------------KGCVKVWDIS 80

Query: 71  RGAYLN-----MFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL 125
                +           + +       DG T+  G + +TLSIW+            +S 
Sbjct: 81  HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS 140

Query: 126 EFSLNYWMICTSLYDGVTCLSWP 148
             +     I        +C S  
Sbjct: 141 APACYALAISPDSKVCFSCCSDG 163

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 27/244 (11%), Positives = 58/244 (23%), Gaps = 56/244 (22%)

Query: 9   EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWN 68
           + L   +   S     DG  L  GG    +   D ++   +   E          + +  
Sbjct: 92  DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

Query: 69  ADRGAYLNMF----------------------------------------SGHGSGLTCG 88
             +  +                                                +  +  
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211

Query: 89  DFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD---GVTCL 145
                       +       + P G      +  S++E           L+     V  L
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271

Query: 146 SWPGTSKYLVTGCVDGKVD-------------GHIDAIQSLSVSAIRESLVSVSVDGTAR 192
            +    K+ V+   D  ++                 ++ S  +S   + +V+ S D  A 
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKAT 331

Query: 193 VFEI 196
           V+E+
Sbjct: 332 VYEV 335

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 4e-06
 Identities = 19/142 (13%), Positives = 39/142 (27%), Gaps = 2/142 (1%)

Query: 59  IEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNAT--LSIWNPKGGEN 116
             D  V  ++ +  +   +                  T   G  +        +P   + 
Sbjct: 204 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP 263

Query: 117 FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVS 176
                   LE S+  + +             P     L       KV    + +  L +S
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLS 323

Query: 177 AIRESLVSVSVDGTARVFEIAE 198
           A R++++    DG    F + +
Sbjct: 324 ADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.2 bits (92), Expect = 9e-05
 Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 19/123 (15%)

Query: 12  GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADR 71
               S +            +G +      + +S  N+          +E S +       
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284

Query: 72  GAYLNMFS-------------------GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK 112
           G +   +                       + LT    + D KT+    D+  +  +  +
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

Query: 113 GGE 115
             E
Sbjct: 345 KPE 347

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 4e-06
 Identities = 14/125 (11%), Positives = 31/125 (24%), Gaps = 28/125 (22%)

Query: 13  HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRG 72
             +  S  A++ D   +A                              +  V ++     
Sbjct: 6   LVEPISCHAWNKDRTQIAICP--------------------------NNHEVHIYEKSGN 39

Query: 73  AY--LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLN 130
            +  ++    H   +T  D+  D   I T   +    +W  KG      +    +  +  
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 131 YWMIC 135
                
Sbjct: 100 CVRWA 104

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 16/76 (21%)

Query: 136 TSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAIR 179
           + L + ++C +W      +     + +V                  H   +  +  +   
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 180 ESLVSVSVDGTARVFE 195
             +V+   D  A V+ 
Sbjct: 64  NRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 15/177 (8%), Positives = 40/177 (22%), Gaps = 25/177 (14%)

Query: 12  GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC--------------------- 50
            H    + + ++ D   + + G            R  +                      
Sbjct: 49  EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 108

Query: 51  -TVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIW 109
               G    +     +    D     ++     S +   D+  +   +  GS +    I+
Sbjct: 109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

Query: 110 NPKGGENFHAIRRSSLEFSLNYWMICTSL---YDGVTCLSWPGTSKYLVTGCVDGKV 163
           +    E       +     + +  +          V  + +      +     D  V
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 225

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 60  EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNAT-LSIWNPKGGENFH 118
            DSTV + +AD+   +   +     L    F T+   +  G D    L  ++   G+   
Sbjct: 221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSF 280

Query: 119 AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAI 178
             R    + S    +     +  +   +    S         G    H +++  +SV + 
Sbjct: 281 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGS----AAAGAGLDSLHKNSVSQISVLSG 336

Query: 179 RES----LVSVSVDGTARVFEI 196
            ++      +  +DG   ++++
Sbjct: 337 GKAKCSQFCTTGMDGGMSIWDV 358

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 10/141 (7%)

Query: 61  DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE---NF 117
           D T+ +WN     ++   +GH  G+ C  +    + + +GS + T+ +W+ + G      
Sbjct: 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL 214

Query: 118 HAIRRSSLEFSLNYWMICTSLYDG---VTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLS 174
                       +   I +  YDG   V  L      +          +  H   +  L 
Sbjct: 215 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 274

Query: 175 VSAIRESLVSVSVDGTARVFE 195
                  +VS S D T  +++
Sbjct: 275 FDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 9e-04
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 75  LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI 134
           ++  S    G+ C  +  D + I +G  + T+ IW+    E    +   +       +  
Sbjct: 8   IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 135 CTSLYDGVTCLSWP 148
              +          
Sbjct: 66  RVIITGSSDSTVRV 79

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 17/128 (13%), Positives = 31/128 (24%), Gaps = 30/128 (23%)

Query: 12  GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADR 71
             KD  S +       LL                               D ++ ++  D 
Sbjct: 9   APKDYISDIKIIPSKSLLLITS--------------------------WDGSLTVYKFDI 42

Query: 72  GAY---LNMFSGHGSGLTCGDFT-TDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEF 127
            A    L     +   L C +F       I  G+    +   +  G  +F A+  +    
Sbjct: 43  QAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL 102

Query: 128 SLNYWMIC 135
            +      
Sbjct: 103 GICRICKY 110

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 3e-05
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 72  GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR------SSL 125
           G+   +  GH   +T    + DGKT+ +      ++ W+   G +            + +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 126 EFSLNYWMICTSLYDGVTCLSWPGTS 151
           + +    +   S  D +  +   G+ 
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 1e-04
 Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 27/137 (19%)

Query: 12  GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADR 71
           GH  + ++L+ S DG+ L S                             +  +  W+   
Sbjct: 10  GHNKAITALSSSADGKTLFSAD--------------------------AEGHINSWDIST 43

Query: 72  GAYLNMFS-GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLN 130
           G    +F   H + +T    T+ G       D+    +     G +      + L     
Sbjct: 44  GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 103

Query: 131 YWMICTSLYDGVTCLSW 147
              +       V     
Sbjct: 104 GLAVSADGDIAVAACYK 120

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 7e-05
 Identities = 9/117 (7%), Positives = 24/117 (20%), Gaps = 27/117 (23%)

Query: 19  SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMF 78
            L  +  G  +                                ++V+           ++
Sbjct: 22  VLGNTPAGDKIQYCN---------------------------GTSVYTVPVGSLTDTEIY 54

Query: 79  SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMIC 135
           + H    T    +  G    +G  +  + IW+     +            +      
Sbjct: 55  TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 1/55 (1%)

Query: 58  GIEDSTVWMWNADRGAYLNMFSGHGSGL-TCGDFTTDGKTICTGSDNATLSIWNP 111
              D T+ +WN                           + + + S N  ++  NP
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 25/161 (15%)

Query: 22  FSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG--------------GIEDSTVWMW 67
              DG  + SG     ++  D  + N   T+ G +               G  DSTV +W
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242

Query: 68  NADRGAYLNMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE 126
           +   G  L    G +           +   + T SD+ T+ +W+ K GE    +      
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 127 FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHI 167
            S             V  +    T      G  +G  +  +
Sbjct: 303 GS----------GGVVWRIRASNTKLVCAVGSRNGTEETKL 333

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 58  GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF 117
           G  D+++ +W+ + G  ++  +GH S  +  +       + +G+ ++T+ IW+ K G+  
Sbjct: 193 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 250

Query: 118 HAIRRSSLEFSLNYWM------ICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQ 171
             ++  +   S    +      + TS  DG   L W   +   +   V  +  G    + 
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL-WDLKTGEFIRNLVTLESGGSGGVVW 309

Query: 172 SLSVSAIRESLVSVSVDGTARVF 194
            +  S  +      S +GT    
Sbjct: 310 RIRASNTKLVCAVGSRNGTEETK 332

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 11/125 (8%), Positives = 30/125 (24%), Gaps = 16/125 (12%)

Query: 6   WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE----- 60
           W         +        D        +   +   D  +  +                 
Sbjct: 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV 248

Query: 61  ----------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
                      + +  ++ ++ A +             + +TDG T+  G     L+ ++
Sbjct: 249 NPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307

Query: 111 PKGGE 115
            +  E
Sbjct: 308 AETLE 312

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 27/128 (21%)

Query: 12  GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADR 71
           GH  S  +     +   + +G                           +D  + ++++  
Sbjct: 10  GHMTSVIT-CLQFEDNYVITGA--------------------------DDKMIRVYDSIN 42

Query: 72  GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNY 131
             +L   SGH  G+    +   G  +   +D         KG         +S    L+ 
Sbjct: 43  KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 102

Query: 132 WMICTSLY 139
                  Y
Sbjct: 103 VEYKNIKY 110

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 61  DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE 115
            + +  ++  +   +   +       C  F   G  +  G     L+++NP   E
Sbjct: 271 LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 58  GIEDSTVWMWNADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
           G  D+ +++++  R    +   + H  G+    + T    + +G+D   +  WN
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADA-CIKRWN 285

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.77
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.76
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.7
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.59
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.54
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.45
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.38
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.21
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.13
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.08
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.02
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.95
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.83
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.79
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.7
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.69
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.68
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.57
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.52
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.49
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.48
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.48
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.45
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.45
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.17
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.92
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.79
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.61
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.49
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.48
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.25
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.11
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.1
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.1
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.08
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.87
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.8
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.58
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.56
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.31
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.17
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.17
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.07
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.94
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.63
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.13
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.4
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.62
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.22
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.68
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	90.68
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.86
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	87.92
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	86.78
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	86.14
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	83.64

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-37  Score=228.84  Aligned_cols=179  Identities=21%  Similarity=0.345  Sum_probs=164.2

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------   59 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------   59 (216)
                      .+..++|+||.++|++++|+|++++||||+.||+|++||+.+++.+..+..|...+                        
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            35678899999999999999999999999999999999999999988888776654                        


Q ss_pred             -------------------------------------------------------------------------------c
Q 043942           60 -------------------------------------------------------------------------------E   60 (216)
Q Consensus        60 -------------------------------------------------------------------------------~   60 (216)
                                                                                                     .
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence                                                                                           7


Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      ++.|++||+++++++..+.+|...|++++|+|++++|++|+.|+.|++||++.......+....             +..
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~-------------~~~  271 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-------------IIC  271 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-------------CCS
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc-------------ccC
Confidence            8999999999999999999999999999999999999999999999999999888777664322             667


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                      .+.+++|+|++++|++++.||.+              .+|..+|++++|+|++++|++|+.||.|++||
T Consensus       272 ~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            89999999999999999999988              57899999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-37  Score=226.77  Aligned_cols=192  Identities=19%  Similarity=0.216  Sum_probs=169.8

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE--EEEeCCCCcc------------------c
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ--CTVEGPRGGI------------------E   60 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~~------------------~   60 (216)
                      +++++..+.+.+|.+.|++++|+|+|++||+|+.||.|++||+.+++..  ..+..|...+                  .
T Consensus        45 ~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~  124 (311)
T d1nr0a1          45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR  124 (311)
T ss_dssp             TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccc
Confidence            3567788889999999999999999999999999999999999887643  4566666554                  3


Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcE-EEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKT-ICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      +..+++|++++++....+.+|...|++++|+|++++ +++|+.|+.|++||+++++....+..               |.
T Consensus       125 ~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~---------------~~  189 (311)
T d1nr0a1         125 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---------------HT  189 (311)
T ss_dssp             SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---------------CS
T ss_pred             cccccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccccc---------------cc
Confidence            456899999999999999999999999999999885 78899999999999999988888776               88


Q ss_pred             cCeEEEEeCCCCcEEEEecccCeE---------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDGKV---------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~~i---------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      .+|+++.|+|+++++++++.|+.+                     .+|..+|++++|+|++++|++++.||.|+|||+++
T Consensus       190 ~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999999999999999987                     35778999999999999999999999999999999


Q ss_pred             ccceeecCC
Q 043942          199 FRRATKAPS  207 (216)
Q Consensus       199 ~~~~~~~~~  207 (216)
                      ++....++.
T Consensus       270 ~~~~~~l~~  278 (311)
T d1nr0a1         270 LKVEKTIPV  278 (311)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            887765543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-34  Score=208.80  Aligned_cols=195  Identities=19%  Similarity=0.330  Sum_probs=172.2

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------   59 (216)
                      ......+|++|.++|++++|+|++++|+||+.||+|++||+.+++.+.++..|...+                       
T Consensus         6 ~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            345567899999999999999999999999999999999999999988888776654                       


Q ss_pred             -----------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC
Q 043942           60 -----------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA  104 (216)
Q Consensus        60 -----------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~  104 (216)
                                                         .|+.+++||+++++.+..+.+|...+.+++|+|+++++++++.|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  165 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  165 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence                                               789999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC--------------------CcEEEEecccCeE-
Q 043942          105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT--------------------SKYLVTGCVDGKV-  163 (216)
Q Consensus       105 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~~~~i-  163 (216)
                      .|++|++.+++....+..               +...+.++.|+|+                    +.++++++.|+.+ 
T Consensus       166 ~v~~~~~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         166 TVRVWVVATKECKAELRE---------------HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             CEEEEETTTCCEEEEECC---------------CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             eEEEEeeccceeeEEEec---------------CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            999999999998888776               6666777777664                    4468888888877 


Q ss_pred             -------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeE
Q 043942          164 -------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKL  212 (216)
Q Consensus       164 -------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~  212 (216)
                                   .+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V  292 (317)
T d1vyhc1         231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV  292 (317)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCE
Confidence                         5688999999999999999999999999999999998887777665444

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-32  Score=196.67  Aligned_cols=184  Identities=17%  Similarity=0.212  Sum_probs=148.6

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe-CCCCcc---------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE-GPRGGI---------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~~---------------~~~~v~i~   67 (216)
                      |+..+.++||.++|++++|+|++++|+||+.||.|++||+++++....+. .|...+               .|+.+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            67889999999999999999999999999999999999999988777664 344433               67888888


Q ss_pred             ECCCcce---------------------------------eeee-------eccCCCeeEEEEcCCCcEEEEecCCCeEE
Q 043942           68 NADRGAY---------------------------------LNMF-------SGHGSGLTCGDFTTDGKTICTGSDNATLS  107 (216)
Q Consensus        68 d~~~~~~---------------------------------~~~~-------~~~~~~v~~~~~~~~~~~l~t~~~d~~i~  107 (216)
                      +......                                 +..+       ......+.+++|+|+++++++|+.|+.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8643110                                 0000       01234577888999999999999999999


Q ss_pred             EEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCE
Q 043942          108 IWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAI  170 (216)
Q Consensus       108 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i  170 (216)
                      +||+++++.......              .|...|++++|+|+++++++++.++.+                 ..|..+|
T Consensus       162 ~~d~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         162 VYKLSGASVSEVKTI--------------VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             EEEEETTEEEEEEEE--------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             ccccccccccccccc--------------ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999887665432211              278899999999999999999999987                 4578899


Q ss_pred             EEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          171 QSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       171 ~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      .+++|+|++++|++++.||.|++||+++++.
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             ccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            9999999999999999999999999987654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-31  Score=195.66  Aligned_cols=180  Identities=19%  Similarity=0.324  Sum_probs=160.5

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--ceEEEEeCCCCcc----------------cCcEEEEEECCC
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--NLQCTVEGPRGGI----------------EDSTVWMWNADR   71 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~----------------~~~~v~i~d~~~   71 (216)
                      ..+|.+.|.+++|+|++++|++++.|+.|++||+...  +....+..+...+                .++.+++||+++
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3478999999999999999999999999999998754  4455555555443                788999999999


Q ss_pred             cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942           72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS  151 (216)
Q Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  151 (216)
                      ++.......|...+.+++|++++..+++++.|+.+++||+++++.+..+.                +...|.+++|+|++
T Consensus       173 ~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~----------------~~~~i~~l~~~~~~  236 (337)
T d1gxra_         173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----------------FTSQIFSLGYCPTG  236 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----------------CSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccceeecccc----------------cccceEEEEEcccc
Confidence            99998999999999999999999999999999999999999998887765                77899999999999


Q ss_pred             cEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          152 KYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       152 ~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      +++++++.++.+             ..|...|.+++|+|++++|++++.||.|++||+.+++.+...
T Consensus       237 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~  303 (337)
T d1gxra_         237 EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc
Confidence            999999999987             577889999999999999999999999999999988776543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-32  Score=202.66  Aligned_cols=188  Identities=16%  Similarity=0.203  Sum_probs=157.0

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcEEEEEECCCcce
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDSTVWMWNADRGAY   74 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~   74 (216)
                      +.++|+|++|+|+|++||+|+.|+.|++||..+++  ....+.+|..++                .|++|++||++++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            34789999999999999999999999999998775  566778888766                789999999987653


Q ss_pred             --eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           75 --LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        75 --~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                        ...+.+|...|++++|+|+++.+++++.|+.+++|++............           ...+...|.+++|+|+++
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~-----------~~~~~~~v~~v~~~p~~~  154 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI-----------KKPIRSTVLSLDWHPNSV  154 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE-----------CTTCCSCEEEEEECTTSS
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc-----------cccccccccccccccccc
Confidence              4456678899999999999999999999999999998876543322210           011778999999999999


Q ss_pred             EEEEecccCeE--------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          153 YLVTGCVDGKV--------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       153 ~l~~~~~~~~i--------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      +|++++.|+.+                                ..|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       155 ~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~  234 (371)
T d1k8kc_         155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  234 (371)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc
Confidence            99999999877                                3566789999999999999999999999999999988


Q ss_pred             ceeecCCccee
Q 043942          201 RATKAPSYSFK  211 (216)
Q Consensus       201 ~~~~~~~~~~~  211 (216)
                      ....+..+..+
T Consensus       235 ~~~~~~~~~~~  245 (371)
T d1k8kc_         235 AVATLASETLP  245 (371)
T ss_dssp             EEEEEECSSCC
T ss_pred             ceeeeeccccc
Confidence            87766655543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-31  Score=194.19  Aligned_cols=176  Identities=19%  Similarity=0.246  Sum_probs=158.6

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~   67 (216)
                      ++....+..|...|.+++|+|++.++++++.|+.|++|++.+++.......+...+                .++.+++|
T Consensus       131 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~  210 (337)
T d1gxra_         131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW  210 (337)
T ss_dssp             -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45567788899999999999999999999999999999999998888877766654                78999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      |+++++.+..+. |...|.+++|+|+++++++++.|+.+++||+++++......                |...|++++|
T Consensus       211 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------~~~~i~~v~~  273 (337)
T d1gxra_         211 DLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL----------------HESCVLSLKF  273 (337)
T ss_dssp             ETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC----------------CSSCEEEEEE
T ss_pred             ccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccccc----------------cccccceEEE
Confidence            999998887775 88899999999999999999999999999999887654433                8899999999


Q ss_pred             CCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          148 PGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                      +|++++|++++.|+.+             ..|...|.+++|+|++++|++++.||+|+|||+
T Consensus       274 s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999988             567889999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-30  Score=192.85  Aligned_cols=193  Identities=22%  Similarity=0.284  Sum_probs=160.9

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCccee
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYL   75 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~   75 (216)
                      .|...|++++|+|++++|++|+.||.|++||...++....+.+|...+                .++.+++||.++....
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccc
Confidence            467779999999999999999999999999999999988888777655                7899999999998888


Q ss_pred             eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                      .....+...+....+.+++++|++++.|+.|++||.+++.....+.....        ...+|...|.+++|+|++++|+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~l~~s~~~~~l~  270 (388)
T d1erja_         199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE--------SGTGHKDSVYSVVFTRDGQSVV  270 (388)
T ss_dssp             EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccc--------cccCCCCCEEEEEECCCCCEEE
Confidence            77775555444444445889999999999999999999988776653211        1123778999999999999999


Q ss_pred             EecccCeE--------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          156 TGCVDGKV--------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       156 ~~~~~~~i--------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      +++.|+.+                          ..|...|.+++|+|++++|++++.||.|++||+++++++..++.|.
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~  350 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR  350 (388)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC
Confidence            99999987                          3567789999999999999999999999999999999888777665


Q ss_pred             eeE
Q 043942          210 FKL  212 (216)
Q Consensus       210 ~~~  212 (216)
                      ..+
T Consensus       351 ~~V  353 (388)
T d1erja_         351 NSV  353 (388)
T ss_dssp             SCE
T ss_pred             CCE
Confidence            443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4e-30  Score=193.84  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=101.1

Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      +...+.+++|+|++ +|++|+.|+.|++||+.+++.+..+....         ...+|..+|++++|+|++++|++++.|
T Consensus       183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~---------~l~~h~~~V~~l~~spdg~~l~sgs~D  252 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH---------SMINNSNSIRSVKFSPQGSLLAIAHDS  252 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC------------CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             CCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc---------ccccccceEEEcccccccceeeeecCC
Confidence            44568899999987 88999999999999999998887765421         112378999999999999999999988


Q ss_pred             Ce---E---------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942          161 GK---V---------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS  209 (216)
Q Consensus       161 ~~---i---------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~  209 (216)
                      +.   +                           .+|...|++++|+|++++|++++.|++|++||+++++++..+..|.
T Consensus       253 ~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~  331 (393)
T d1sq9a_         253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC  331 (393)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred             CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcC
Confidence            74   2                           3689999999999999999999999999999999999887776654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.4e-29  Score=181.15  Aligned_cols=177  Identities=19%  Similarity=0.297  Sum_probs=161.5

Q ss_pred             CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942            4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~   67 (216)
                      .+....+.+|...+.++.|+|+++.+++++.|+.+++||+.+++....+..+....                .|+.|++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~  170 (317)
T d1vyhc1          91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW  170 (317)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEE
Confidence            44556677899999999999999999999999999999999999988888776544                78999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCC--------------------cEEEEecCCCeEEEEeCCCCceeEEeecccccc
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDG--------------------KTICTGSDNATLSIWNPKGGENFHAIRRSSLEF  127 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~  127 (216)
                      +++++.....+.+|...+.+++|+|++                    ..+++++.|+.|++||+++++.+..+..     
T Consensus       171 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-----  245 (317)
T d1vyhc1         171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-----  245 (317)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-----
T ss_pred             eeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC-----
Confidence            999999999999999999999998763                    4688999999999999999999888876     


Q ss_pred             cccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942          128 SLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARV  193 (216)
Q Consensus       128 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~v  193 (216)
                                |...|.+++|+|++++|++++.||.+              .+|..+|++++|+|++++|++++.||+|++
T Consensus       246 ----------~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         246 ----------HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV  315 (317)
T ss_dssp             ----------CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             ----------CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence                      88999999999999999999999988              678999999999999999999999999999


Q ss_pred             EE
Q 043942          194 FE  195 (216)
Q Consensus       194 w~  195 (216)
                      ||
T Consensus       316 Wd  317 (317)
T d1vyhc1         316 WE  317 (317)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.4e-29  Score=187.69  Aligned_cols=176  Identities=24%  Similarity=0.436  Sum_probs=145.2

Q ss_pred             eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc------------------c-------------
Q 043942           11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG------------------I-------------   59 (216)
Q Consensus        11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~------------------~-------------   59 (216)
                      .+|.+.|+|++|+|||++||+|+ |+.|++||+.+++.+..+..+...                  +             
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999987 899999999999887766543211                  0             


Q ss_pred             ---cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942           60 ---EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT  136 (216)
Q Consensus        60 ---~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (216)
                         .|+.|++||..+++.+..+.+|...|.++++++++..+++++.++.+++||.++.........              
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------------  203 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--------------  203 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--------------
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccc--------------
Confidence               789999999999999999999999999999999999999999999999999998877766653              


Q ss_pred             eeecCeEEEEeCCCCcEEEEecccCeE---------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          137 SLYDGVTCLSWPGTSKYLVTGCVDGKV---------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                       +...+....+.+++++|++++.|+.+                     .+|...|.+++|+|++++|++++.|+.|++||
T Consensus       204 -~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd  282 (388)
T d1erja_         204 -EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  282 (388)
T ss_dssp             -SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             -ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEe
Confidence             33333444445688999999999988                     35678899999999999999999999999999


Q ss_pred             cccccce
Q 043942          196 IAEFRRA  202 (216)
Q Consensus       196 ~~~~~~~  202 (216)
                      +.+.+..
T Consensus       283 ~~~~~~~  289 (388)
T d1erja_         283 LQNANNK  289 (388)
T ss_dssp             C------
T ss_pred             ccCCccc
Confidence            9875543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=3e-29  Score=183.57  Aligned_cols=183  Identities=15%  Similarity=0.223  Sum_probs=150.1

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcC--CCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGF--HGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMW   67 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~   67 (216)
                      ...+.+|.++|.+++|+|++++|++++.  +..+++|++++++....+..|...+                 .|+.|++|
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccc
Confidence            4568899999999999999999999875  4669999999887776666555433                 68999999


Q ss_pred             ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      |+++++....+..|...|+++.|+|+++++++++.|+.+++||+.++.....+......        ..+|...|++++|
T Consensus       175 d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~--------~~~h~~~V~~~~~  246 (311)
T d1nr0a1         175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK--------NVAHSGSVFGLTW  246 (311)
T ss_dssp             ETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS--------SCSSSSCEEEEEE
T ss_pred             cccccccccccccccccccccccCccccccccccccccccccccccccccccccccccc--------ccccccccccccc
Confidence            99999999999999999999999999999999999999999999999887776542211        1127789999999


Q ss_pred             CCCCcEEEEecccCeE--------------EeeeC-CEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          148 PGTSKYLVTGCVDGKV--------------DGHID-AIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i--------------~~~~~-~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      +|++++|++|+.||.+              ..|.. ....+.+.+++++|++++.||.|++||.+
T Consensus       247 s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            9999999999999988              11211 12233455567789999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=8.2e-29  Score=185.29  Aligned_cols=193  Identities=9%  Similarity=0.015  Sum_probs=147.5

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEE--eCCCCcc----------------cCcEEEEE
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV--EGPRGGI----------------EDSTVWMW   67 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~~----------------~~~~v~i~   67 (216)
                      .+..+++|.++|.+++|+|++++|++++.|+.|++||+.+++....+  ..+...+                .++++++|
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~  122 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  122 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceee
Confidence            56788999999999999999999999999999999999887655443  3333333                78899999


Q ss_pred             ECCCcce----eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccc---cccccceEEEeeeec
Q 043942           68 NADRGAY----LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL---EFSLNYWMICTSLYD  140 (216)
Q Consensus        68 d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  140 (216)
                      ++.....    ......|...|.+++|+|++++|++|+.|+.+++||...............   ............|..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (371)
T d1k8kc_         123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  202 (371)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             eeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC
Confidence            9876543    233456888999999999999999999999999999876543221111100   000111222334788


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      .+.+++|+|+++++++++.|+.+              ..|..+|.+++|+|++++|++|+ |+.+++|.....
T Consensus       203 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~  274 (371)
T d1k8kc_         203 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSA  274 (371)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred             cEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence            89999999999999999999988              56778999999999998887654 787777776553

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-28  Score=179.60  Aligned_cols=181  Identities=19%  Similarity=0.336  Sum_probs=146.2

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------   59 (216)
                      +.++.+.|+||.+.|.+ +++++|++||||+.||+|++||+.+++.+.++.+|...+                       
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccc
Confidence            45677889999999865 467789999999999999999999999999888877654                       


Q ss_pred             -----------------------------------------------------------------------cCcEEEEEE
Q 043942           60 -----------------------------------------------------------------------EDSTVWMWN   68 (216)
Q Consensus        60 -----------------------------------------------------------------------~~~~v~i~d   68 (216)
                                                                                             .++.+++||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence                                                                                   556666676


Q ss_pred             CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942           69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP  148 (216)
Q Consensus        69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  148 (216)
                      .+....+..+.+|...+..+.  +++..+++++.|+.|++||++.++.+..+..               |...+.++.++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~---------------~~~~v~~~~~~  226 (342)
T d2ovrb2         164 PETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTG---------------HQSLTSGMELK  226 (342)
T ss_dssp             GGGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECC---------------CCSCEEEEEEE
T ss_pred             cccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEecc---------------cccceeEEecC
Confidence            666666666777766555544  4688999999999999999999998888776               78888888776


Q ss_pred             CCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          149 GTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       149 ~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                      +  +++++++.|+.+                 ..|...+.++.+  +++++++++.||+|++||+++++.+..+
T Consensus       227 ~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         227 D--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             T--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             C--CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence            4  699999999988                 234556666665  5679999999999999999998876544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.8e-29  Score=183.52  Aligned_cols=189  Identities=17%  Similarity=0.173  Sum_probs=148.8

Q ss_pred             ceeEEeeccc-cceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCceEE--------EEeCCCCcc--------------
Q 043942            5 DWASEILGHK-DSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRNLQC--------TVEGPRGGI--------------   59 (216)
Q Consensus         5 ~~~~~~~~h~-~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~~--------~~~~~~~~~--------------   59 (216)
                      ..+..+.+|. ..|++++|+|  ++++|++|+.||+|++||+..++...        .+..+..++              
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            3456677774 6899999998  56899999999999999987643221        122233222              


Q ss_pred             ----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcE-EEEecCCCeEEEEeCCCCceeEEeecccccccccceEE
Q 043942           60 ----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKT-ICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI  134 (216)
Q Consensus        60 ----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  134 (216)
                          .++.+.+|+..+++.+..+.+|...|.+++|+|++.. +++++.|+.+++||....+.........          
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~----------  202 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH----------  202 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS----------
T ss_pred             eeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceeccccc----------
Confidence                4677899999999999999999999999999998875 6789999999999998877666554311          


Q ss_pred             EeeeecCeEEEEeCCC-CcEEEEecccCeE--------------EeeeCCEEEEEEe---cCCCeEEEEeCCCcEEEEEc
Q 043942          135 CTSLYDGVTCLSWPGT-SKYLVTGCVDGKV--------------DGHIDAIQSLSVS---AIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~~-~~~l~~~~~~~~i--------------~~~~~~i~~~~~~---~~~~~l~s~~~d~~v~vw~~  196 (216)
                        .+...|.+++|+|+ +.++++++.|+.+              .+|..++..+.|+   |++++|++++.|+.|+|||+
T Consensus       203 --~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~  280 (325)
T d1pgua1         203 --KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV  280 (325)
T ss_dssp             --CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred             --CCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEEC
Confidence              16678999999996 6889999999988              3455566555555   78999999999999999999


Q ss_pred             ccccceeec
Q 043942          197 AEFRRATKA  205 (216)
Q Consensus       197 ~~~~~~~~~  205 (216)
                      ++++.+...
T Consensus       281 ~~~~~~~~~  289 (325)
T d1pgua1         281 TTSKCVQKW  289 (325)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCCEEEEE
Confidence            988876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.6e-29  Score=180.11  Aligned_cols=174  Identities=16%  Similarity=0.258  Sum_probs=136.7

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce-----EEEEeCCCCcc------------------
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL-----QCTVEGPRGGI------------------   59 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~------------------   59 (216)
                      +++++++|++|.++|++++|+|    |+||+.||+|++||+.++..     +..+.......                  
T Consensus         2 ~~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~   77 (287)
T d1pgua2           2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH   77 (287)
T ss_dssp             EEEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE
T ss_pred             CcceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeecccccccccccc
Confidence            4688999999999999999987    99999999999998775421     11111110000                  


Q ss_pred             -------------------------------------------------------------cCcEEEEEECCCcceeeee
Q 043942           60 -------------------------------------------------------------EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        60 -------------------------------------------------------------~~~~v~i~d~~~~~~~~~~   78 (216)
                                                                                   .++.+++|++........+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~  157 (287)
T d1pgua2          78 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL  157 (287)
T ss_dssp             ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred             ccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeee
Confidence                                                                         3456788887655544443


Q ss_pred             e-ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEE-eecccccccccceEEEeeeecCeEEEEeCCC------
Q 043942           79 S-GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA-IRRSSLEFSLNYWMICTSLYDGVTCLSWPGT------  150 (216)
Q Consensus        79 ~-~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------  150 (216)
                      . .|...+++++|+|++.+|++|+.|+.|++||+.+++.... +..               |...|.+++|+|.      
T Consensus       158 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~---------------h~~~v~~~~~~p~~~~~~~  222 (287)
T d1pgua2         158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF---------------RTSKINAISWKPAEKGANE  222 (287)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC---------------CSSCEEEEEECCCC-----
T ss_pred             eeccCCceeEEEeccCccccccccccccccceeecccccccccccc---------------cccccceeeeccccccccc
Confidence            3 4677899999999999999999999999999998876543 233               7889999999874      


Q ss_pred             ----CcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942          151 ----SKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI  196 (216)
Q Consensus       151 ----~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~  196 (216)
                          +.++++|+.|+.+               .+|...|++++|+|++ .|++++.|+.|++|++
T Consensus       223 ~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                4689999999988               5788999999999986 5889999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6e-27  Score=172.41  Aligned_cols=193  Identities=18%  Similarity=0.289  Sum_probs=152.6

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------------
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------------   59 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------------   59 (216)
                      +++++++.++++|.++|++++|+|+ .+|++|+.|+.|++|+....+............                     
T Consensus        40 ~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  118 (355)
T d1nexb2          40 SINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN  118 (355)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTS
T ss_pred             CCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCC
Confidence            3678999999999999999999985 589999999999999998876554433222111                     


Q ss_pred             ------------------------------------------------------------cCcEEEEEECCCcceeeeee
Q 043942           60 ------------------------------------------------------------EDSTVWMWNADRGAYLNMFS   79 (216)
Q Consensus        60 ------------------------------------------------------------~~~~v~i~d~~~~~~~~~~~   79 (216)
                                                                                  .++.+++||+++++.+....
T Consensus       119 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  198 (355)
T d1nexb2         119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS  198 (355)
T ss_dssp             EEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             cEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeee
Confidence                                                                        45566666666666666677


Q ss_pred             ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942           80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      ++...+.++.|+|++..+++++.|+.|++||++++..+..+..               |...|.++.+++  +++++++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---------------h~~~v~~~~~~~--~~l~~~~~  261 (355)
T d1nexb2         199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG---------------HTALVGLLRLSD--KFLVSAAA  261 (355)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC---------------CSSCCCEEEECS--SEEEEECT
T ss_pred             ccccccccccccccceeeecccccceEEeeecccccccccccc---------------cccccccccccc--ceeeeeec
Confidence            7888899999999999999999999999999999999888877               889999999874  68999999


Q ss_pred             cCeE------------EeeeCCEEEEE-EecCCCeEEEEeCCCcEEEEEccccccee-ecCCcceeE
Q 043942          160 DGKV------------DGHIDAIQSLS-VSAIRESLVSVSVDGTARVFEIAEFRRAT-KAPSYSFKL  212 (216)
Q Consensus       160 ~~~i------------~~~~~~i~~~~-~~~~~~~l~s~~~d~~v~vw~~~~~~~~~-~~~~~~~~~  212 (216)
                      ||.+            ..|...+..+. +++++++++++ .|+.|++||+++++.+. .+..+...+
T Consensus       262 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V  327 (355)
T d1nexb2         262 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQI  327 (355)
T ss_dssp             TSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEE
T ss_pred             ccccccccccccceecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCE
Confidence            9988            55666666654 56677766655 58999999999988764 344444333

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-26  Score=165.35  Aligned_cols=171  Identities=22%  Similarity=0.414  Sum_probs=129.2

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------------   59 (216)
                      +++++++++++|.+.|.+++|  ++++|++|+.|+.|++|++..+.............                      
T Consensus        43 ~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (293)
T d1p22a2          43 NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW  120 (293)
T ss_dssp             SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEe
Confidence            456677777777777777665  45677777777777777776654433332211110                      


Q ss_pred             -----------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC
Q 043942           60 -----------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA  104 (216)
Q Consensus        60 -----------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~  104 (216)
                                                         .|+.+++||+++++.+..+.++...+..+.++  +..+++++.|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg  198 (293)
T d1p22a2         121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDN  198 (293)
T ss_dssp             ECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTS
T ss_pred             eccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCC
Confidence                                               78889999998888888888888888777775  56888999999


Q ss_pred             eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------------
Q 043942          105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------------  163 (216)
Q Consensus       105 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------------  163 (216)
                      .|++||+++.+.+.....               +...+..  +++++.+|++++.||.+                     
T Consensus       199 ~i~i~d~~~~~~~~~~~~---------------~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  261 (293)
T d1p22a2         199 TIRLWDIECGACLRVLEG---------------HEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR  261 (293)
T ss_dssp             CEEEEETTTCCEEEEECC---------------CSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred             EEEEEecccceeeeeecc---------------cceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeE
Confidence            999999998888777765               5666654  45677899999999988                     


Q ss_pred             --EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942          164 --DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE  195 (216)
Q Consensus       164 --~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~  195 (216)
                        .+|...|++++|  ++++|++++.||+|++||
T Consensus       262 ~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         262 TLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence              467889999988  567899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.6e-27  Score=173.28  Aligned_cols=203  Identities=9%  Similarity=0.092  Sum_probs=143.0

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEE---eCCCCcc-----------------cCcEE
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV---EGPRGGI-----------------EDSTV   64 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~---~~~~~~~-----------------~~~~v   64 (216)
                      +.++..++|++.|++|+|+|++++||+|+.|++|++||++++.....+   ..|..++                 .|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            567778899999999999999999999999999999999765433222   2344433                 78999


Q ss_pred             EEEECCCcceeeeeeccCCC-eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec----cccc---------cccc
Q 043942           65 WMWNADRGAYLNMFSGHGSG-LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR----SSLE---------FSLN  130 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~----~~~~---------~~~~  130 (216)
                      ++|++...........+... .....+.++...+++++.|+.+++||++.+........    ....         ....
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            99999987766665544443 34555667888999999999999999865432211110    0000         0000


Q ss_pred             -----------------------ceEEEeeeecCeEEEEe-CCCCcEEEEecccCeE-----------------------
Q 043942          131 -----------------------YWMICTSLYDGVTCLSW-PGTSKYLVTGCVDGKV-----------------------  163 (216)
Q Consensus       131 -----------------------~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~i-----------------------  163 (216)
                                             ................+ ..++..+++++.||.+                       
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence                                   00001112223444444 4466788888888876                       


Q ss_pred             ------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          164 ------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       164 ------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                            ..|...+.+++|+|++++|++|+.||.|++||+.+++.+..++.
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC
Confidence                  34556789999999999999999999999999999888776654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=1.4e-25  Score=162.57  Aligned_cols=183  Identities=15%  Similarity=0.249  Sum_probs=136.8

Q ss_pred             CCCCceeEEee-ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce-------------EEEEe-CCCCcc------
Q 043942            1 INQGDWASEIL-GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL-------------QCTVE-GPRGGI------   59 (216)
Q Consensus         1 l~~g~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-------------~~~~~-~~~~~~------   59 (216)
                      ++++++++.+. +|...|.+++|+|++++ ++++.|+.+++|+......             ...+. .+....      
T Consensus        41 ~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~  119 (299)
T d1nr0a2          41 ISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY  119 (299)
T ss_dssp             TTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred             CCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCcccccccccccccccccccccccccccccccccc
Confidence            35677777774 68999999999999875 5566699999999754211             00000 000000      


Q ss_pred             ------------------------------------cCcEEEEEECCCcceee-eeeccCCCeeEEEEcCCCcEEEEecC
Q 043942           60 ------------------------------------EDSTVWMWNADRGAYLN-MFSGHGSGLTCGDFTTDGKTICTGSD  102 (216)
Q Consensus        60 ------------------------------------~~~~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~t~~~  102 (216)
                                                          .++.+++||+++++... ....|...|++++|+|+++++++++.
T Consensus       120 ~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  199 (299)
T d1nr0a2         120 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ  199 (299)
T ss_dssp             SEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                78999999998776543 34568899999999999999999999


Q ss_pred             CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------Ee-
Q 043942          103 NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DG-  165 (216)
Q Consensus       103 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~-  165 (216)
                      |+.|++||+.++........            ...|...|++++|+|++++|++++.|+.+                .. 
T Consensus       200 d~~i~~~~~~~~~~~~~~~~------------~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  267 (299)
T d1nr0a2         200 SRKVIPYSVANNFELAHTNS------------WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH  267 (299)
T ss_dssp             TSCEEEEEGGGTTEESCCCC------------CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred             cccccccccccccccccccc------------ccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCC
Confidence            99999999987765432221            01278899999999999999999999987                12 


Q ss_pred             eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          166 HIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       166 ~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      +...+..+.| +++++|++++.|++|++||+.
T Consensus       268 ~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         268 AMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            2345666554 667899999999999999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=3.8e-25  Score=163.55  Aligned_cols=186  Identities=12%  Similarity=0.076  Sum_probs=144.2

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCC--cEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHG--LVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV   64 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v   64 (216)
                      .++.+ .+ +|...|.+++|+|||++|++++.+.  .|++||..+++... +..+...+                .++.+
T Consensus        33 ~~~~~-~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~~~~~  109 (360)
T d1k32a3          33 GTYVL-KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEI  109 (360)
T ss_dssp             SSBEE-EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCcEE-Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-eeCCCceEEeeeecccccccceecccccc
Confidence            44443 34 6999999999999999998876553  79999999876553 33333322                88899


Q ss_pred             EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe----------cCCCeEEEEeCCCCceeEEeecccccccccceEE
Q 043942           65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG----------SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI  134 (216)
Q Consensus        65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~----------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  134 (216)
                      ++|+..+++....+..|...+.+++|+|+|++|+.+          ..++.+++||+.+++......             
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-------------  176 (360)
T d1k32a3         110 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-------------  176 (360)
T ss_dssp             EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-------------
T ss_pred             ccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc-------------
Confidence            999999999988899899999999999999999854          345679999999876554333             


Q ss_pred             EeeeecCeEEEEeCCCCcEEEEecccCeE---------------------------------------------------
Q 043942          135 CTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------------------------------------------  163 (216)
Q Consensus       135 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------------------------------------------  163 (216)
                         +...+..+.|+|+|++|++++.++.+                                                   
T Consensus       177 ---~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  253 (360)
T d1k32a3         177 ---ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY  253 (360)
T ss_dssp             ---SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred             ---cccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccc
Confidence               44555666677777776666554432                                                   


Q ss_pred             ---------------------------------------------------------EeeeCCEEEEEEecCCCeEEEEe
Q 043942          164 ---------------------------------------------------------DGHIDAIQSLSVSAIRESLVSVS  186 (216)
Q Consensus       164 ---------------------------------------------------------~~~~~~i~~~~~~~~~~~l~s~~  186 (216)
                                                                               ..|...|.+++|+|||++|++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~  333 (360)
T d1k32a3         254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRK  333 (360)
T ss_dssp             GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEE
T ss_pred             cceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEE
Confidence                                                                     35567799999999999999999


Q ss_pred             CCCcEEEEEcccccceeecCC
Q 043942          187 VDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       187 ~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      .||.|++||+++++....+..
T Consensus       334 ~Dg~i~v~d~~~~~~~~~~~~  354 (360)
T d1k32a3         334 DDGKIYTFPLEKPEDERTVET  354 (360)
T ss_dssp             TTSCEEEEESSCTTSCEECCC
T ss_pred             CCCeEEEEECCCCCcceEEEe
Confidence            999999999999887766543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.2e-24  Score=159.90  Aligned_cols=199  Identities=22%  Similarity=0.328  Sum_probs=138.7

Q ss_pred             eEEeeccccce-EEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECC
Q 043942            7 ASEILGHKDSF-SSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNAD   70 (216)
Q Consensus         7 ~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~   70 (216)
                      ..+|+||.+.| +|+++  ++++|+||+.|++|++||+.+++.+.++.+|...+               .|++|++|+..
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETT
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccc
Confidence            56799998876 55554  67899999999999999999999999999988766               79999999999


Q ss_pred             CcceeeeeeccCC--CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc------c--cccceEEEeeeec
Q 043942           71 RGAYLNMFSGHGS--GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE------F--SLNYWMICTSLYD  140 (216)
Q Consensus        71 ~~~~~~~~~~~~~--~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~  140 (216)
                      ..........+..  ......+.++++.+++++.|+.|++||+.+.............      .  ..........+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence            8877666554333  3456677889999999999999999999877654433221100      0  0011111112223


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                      .+.  .+.+++++++++..|+.+              ..+...+.++.|+|+++++++++.|+.|++||++++.....+.
T Consensus       163 ~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         163 SVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             CEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccc--ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc
Confidence            333  334566777777777766              3455677888888888888888888888888888777766655


Q ss_pred             Ccc
Q 043942          207 SYS  209 (216)
Q Consensus       207 ~~~  209 (216)
                      .|.
T Consensus       241 ~h~  243 (355)
T d1nexb2         241 GHT  243 (355)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.5e-25  Score=162.67  Aligned_cols=173  Identities=21%  Similarity=0.217  Sum_probs=135.1

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcC--CCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEEC
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGF--HGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNA   69 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~   69 (216)
                      .+..|.++|.+++|++++++|++++.  ++.+++|+..+++.+..+..|...+                 .|+.+++||.
T Consensus       110 ~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~  189 (325)
T d1pgua1         110 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG  189 (325)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred             ccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccc
Confidence            45678899999999999999887764  6789999999999888887766654                 7999999999


Q ss_pred             CCcceeeee---eccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           70 DRGAYLNMF---SGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        70 ~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      ++.+....+   ..|...|.+++|+|+ +.++++++.|+.|++||+++++.+..+..               |..++..+
T Consensus       190 ~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~---------------~~~~v~~~  254 (325)
T d1pgua1         190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED---------------DQEPVQGG  254 (325)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB---------------TTBCCCSC
T ss_pred             cccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccc---------------cccccccc
Confidence            877665544   456778999999996 68899999999999999999998888875               44554444


Q ss_pred             EeC---CCCcEEEEecccCeE--------------EeeeC--CEEEEEEecC-CCeEEEEeCCCcEEEEEc
Q 043942          146 SWP---GTSKYLVTGCVDGKV--------------DGHID--AIQSLSVSAI-RESLVSVSVDGTARVFEI  196 (216)
Q Consensus       146 ~~~---~~~~~l~~~~~~~~i--------------~~~~~--~i~~~~~~~~-~~~l~s~~~d~~v~vw~~  196 (216)
                      .|+   |++++|++++.|+.+              ..|..  .+..+++.+. +.+|++++.||.|++||+
T Consensus       255 ~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            443   678999999999988              12222  2333333332 347889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.8e-24  Score=154.28  Aligned_cols=180  Identities=19%  Similarity=0.382  Sum_probs=143.1

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE-------------------------------
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ-------------------------------   49 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~-------------------------------   49 (216)
                      ++++++++++.+|.+.|.+++|+|+  +|++++.|+.+++|+.......                               
T Consensus        44 ~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  121 (342)
T d2ovrb2          44 AVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV  121 (342)
T ss_dssp             TTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             CCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEE
Confidence            4678999999999999999999874  8999999998888886542111                               


Q ss_pred             -------------------------------------------------EEEeCCCCcc--------------cCcEEEE
Q 043942           50 -------------------------------------------------CTVEGPRGGI--------------EDSTVWM   66 (216)
Q Consensus        50 -------------------------------------------------~~~~~~~~~~--------------~~~~v~i   66 (216)
                                                                       ..+..+....              .|+.|++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~  201 (342)
T d2ovrb2         122 WDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV  201 (342)
T ss_dssp             EESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             eecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEE
Confidence                                                             1111111111              7899999


Q ss_pred             EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942           67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS  146 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  146 (216)
                      ||++.++.+..+.+|...+.++++++  +++++++.|+.|++||+...+....+.....            |...+.++.
T Consensus       202 ~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~------------~~~~~~~~~  267 (342)
T d2ovrb2         202 WDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNK------------HQSAVTCLQ  267 (342)
T ss_dssp             EETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTS------------CSSCEEEEE
T ss_pred             eecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccce------------eeeceeecc
Confidence            99999999999999999999888764  6999999999999999998887776654211            556677777


Q ss_pred             eCCCCcEEEEecccCeE-------------------EeeeCCEEEEEEecCCCeEEEEeCCCc----EEEEEccc
Q 043942          147 WPGTSKYLVTGCVDGKV-------------------DGHIDAIQSLSVSAIRESLVSVSVDGT----ARVFEIAE  198 (216)
Q Consensus       147 ~~~~~~~l~~~~~~~~i-------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~----v~vw~~~~  198 (216)
                      ++  ++++++++.||.+                   .+|...|++++|+|++.+|++|+.||+    |++||+..
T Consensus       268 ~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         268 FN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             cC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            65  5689999999988                   245567999999999999999998885    99999863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.8e-22  Score=143.39  Aligned_cols=171  Identities=23%  Similarity=0.449  Sum_probs=132.1

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADR   71 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~   71 (216)
                      .++....|...|+|++|  ++++||||+.||+|++||+.+++.+.++.+|...+              .|+.|++|++..
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccc
Confidence            34555678888998765  78999999999999999999999999999988876              789999999876


Q ss_pred             cceeee-------------------------------------------eeccCCCeeEEEEcCCCcEEEEecCCCeEEE
Q 043942           72 GAYLNM-------------------------------------------FSGHGSGLTCGDFTTDGKTICTGSDNATLSI  108 (216)
Q Consensus        72 ~~~~~~-------------------------------------------~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~  108 (216)
                      +.....                                           +..|...+..+.+.  ...+++++.|+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~  162 (293)
T d1p22a2          85 GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV  162 (293)
T ss_dssp             CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred             ccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceee
Confidence            543211                                           12344455555544  456778888999999


Q ss_pred             EeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEE
Q 043942          109 WNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLS  174 (216)
Q Consensus       109 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~  174 (216)
                      ||+++++.+..+..               +...+..+.++  +.++++++.|+.+              ..+...+.  .
T Consensus       163 ~d~~~~~~~~~~~~---------------~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~  223 (293)
T d1p22a2         163 WNTSTCEFVRTLNG---------------HKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--C  223 (293)
T ss_dssp             EETTTCCEEEEEEC---------------CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--E
T ss_pred             ecCCCCcEEEEEcc---------------cccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeee--e
Confidence            99998888877765               66777777765  5689999999987              34455554  4


Q ss_pred             EecCCCeEEEEeCCCcEEEEEcccc
Q 043942          175 VSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       175 ~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      +++++.+|++++.||.|++||+...
T Consensus       224 ~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         224 IRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             ccccceEEEEEcCCCEEEEEECCCC
Confidence            5678899999999999999998754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.2e-23  Score=158.07  Aligned_cols=158  Identities=22%  Similarity=0.314  Sum_probs=128.5

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC------CCCcc----------------cC---cEEEE
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG------PRGGI----------------ED---STVWM   66 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~------~~~~~----------------~~---~~v~i   66 (216)
                      .+...+.+++|+|++ +||+|+.|++|++||+.+++.+..++.      |...+                .|   +.|++
T Consensus       182 ~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~l  260 (393)
T d1sq9a_         182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL  260 (393)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeee
Confidence            355668999999997 899999999999999999987766543      33333                23   46999


Q ss_pred             EECCCcceeeeee-------------ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceE
Q 043942           67 WNADRGAYLNMFS-------------GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWM  133 (216)
Q Consensus        67 ~d~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  133 (216)
                      ||+++++.+..+.             +|.+.|++++|+|++++|++|+.|++|++||+++++.+.++..           
T Consensus       261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g-----------  329 (393)
T d1sq9a_         261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM-----------  329 (393)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-----------
T ss_pred             cccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECC-----------
Confidence            9999988777663             7999999999999999999999999999999999999999987           


Q ss_pred             EEeeeecCeE----EEEeCCCCcEEEEecccCeEEeeeCCEEEEEEecCC----------CeEEEEeCCCcEEEEEc
Q 043942          134 ICTSLYDGVT----CLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIR----------ESLVSVSVDGTARVFEI  196 (216)
Q Consensus       134 ~~~~~~~~v~----~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~~~~~----------~~l~s~~~d~~v~vw~~  196 (216)
                          |.+.|.    .++|+|++..++++           .+.++.|.+.+          +.|++++.|+.|++|.-
T Consensus       330 ----H~~~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         330 ----HCDDIEIEEDILAVDEHGDSLAEP-----------GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             ----CGGGCSSGGGCCCBCTTSCBCSSC-----------CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             ----cCCcccCCccEEEECCCCCEEEEc-----------ccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence                777765    47888888876543           35666666543          46889999999999963

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=2.2e-21  Score=139.90  Aligned_cols=204  Identities=14%  Similarity=0.089  Sum_probs=151.0

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcE
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDST   63 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~   63 (216)
                      +++++.++++... ..+..++|+|||++| ++++.++.|++||+.+++.+..+..+....                .+..
T Consensus        19 ~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (301)
T d1l0qa2          19 VTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASST   97 (301)
T ss_dssp             TTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccce
Confidence            4678888888754 457899999999987 567789999999999999998887765432                6788


Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEE-EecCCCeEEEEeCCCCceeEEeecccc----ccccc--ceEE--
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTIC-TGSDNATLSIWNPKGGENFHAIRRSSL----EFSLN--YWMI--  134 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-t~~~d~~i~~wd~~~~~~~~~~~~~~~----~~~~~--~~~~--  134 (216)
                      +.+|+..+++....+..+ ....++.|+|+++.++ ++..++.+.+|+..+++....+.....    ...+.  ....  
T Consensus        98 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (301)
T d1l0qa2          98 LSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVAN  176 (301)
T ss_dssp             EEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred             eeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeec
Confidence            999999999888888744 5678999999998775 566788999999998887766554211    11111  0100  


Q ss_pred             ------------------EeeeecCeEEEEeCCCCcEEEEeccc---CeE-------------EeeeCCEEEEEEecCCC
Q 043942          135 ------------------CTSLYDGVTCLSWPGTSKYLVTGCVD---GKV-------------DGHIDAIQSLSVSAIRE  180 (216)
Q Consensus       135 ------------------~~~~~~~v~~~~~~~~~~~l~~~~~~---~~i-------------~~~~~~i~~~~~~~~~~  180 (216)
                                        .......+..+++++++..++.++.+   +.+             ..+...+.+++|+|||+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~  256 (301)
T d1l0qa2         177 FDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK  256 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred             ccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCC
Confidence                              01123446678899999887765443   334             23446789999999999


Q ss_pred             eE-EEEeCCCcEEEEEcccccceeecC
Q 043942          181 SL-VSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       181 ~l-~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                      +| ++++.|+.|++||+++++.+..++
T Consensus       257 ~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         257 KVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            87 577789999999999998776654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.3e-21  Score=143.16  Aligned_cols=143  Identities=20%  Similarity=0.332  Sum_probs=127.2

Q ss_pred             eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942            6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA   69 (216)
Q Consensus         6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~   69 (216)
                      .......+...+....+.+.+.++++++.|+.|++||+++++.+..+..|...+                .|+.|++||+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~  255 (340)
T d1tbga_         176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL  255 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEee
Confidence            344555677889999999999999999999999999999999999988877654                7899999999


Q ss_pred             CCcceeeee--eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           70 DRGAYLNMF--SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        70 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      +.......+  ..+...+.+++|+|++++|++|+.|+.|++||+.+++.+..+..               |...|++++|
T Consensus       256 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---------------H~~~V~~l~~  320 (340)
T d1tbga_         256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG---------------HDNRVSCLGV  320 (340)
T ss_dssp             TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC---------------CSSCEEEEEE
T ss_pred             cccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC---------------CCCCEEEEEE
Confidence            988776655  34567899999999999999999999999999999999998887               8999999999


Q ss_pred             CCCCcEEEEecccCeE
Q 043942          148 PGTSKYLVTGCVDGKV  163 (216)
Q Consensus       148 ~~~~~~l~~~~~~~~i  163 (216)
                      +|++++|++|+.||.|
T Consensus       321 s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         321 TDDGMAVATGSWDSFL  336 (340)
T ss_dssp             CTTSSCEEEEETTSCE
T ss_pred             eCCCCEEEEEccCCEE
Confidence            9999999999999876

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=1.8e-21  Score=143.63  Aligned_cols=163  Identities=15%  Similarity=0.086  Sum_probs=133.2

Q ss_pred             EEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEEECCCcceeeee
Q 043942           18 SSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMWNADRGAYLNMF   78 (216)
Q Consensus        18 ~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~d~~~~~~~~~~   78 (216)
                      ..-.||| ||+++|+++ +|.|++||...+...+.  .|...+                  .+..|++||.++++.. .+
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~   81 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF   81 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Ee
Confidence            3467999 999999987 57999999988876553  344333                  2347999999987654 56


Q ss_pred             eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                      ..|...+.+++|+|++++|++++.++.+++|++.+++....+..               +...+.+++|+|+|++|+.+.
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---------------REAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---------------SSSCCCCEEECTTSCEEEEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceeeeeec---------------ccccccchhhccceeeeeeec
Confidence            67999999999999999999999999999999999988877776               778889999999999998654


Q ss_pred             ccCe----------E-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942          159 VDGK----------V-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       159 ~~~~----------i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~  199 (216)
                      .+..          +             ..+...+..++|+|+|++|++++.|+.+++|+....
T Consensus       147 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         147 PLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             cccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            3322          1             344567888999999999999999999999997654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1e-19  Score=138.24  Aligned_cols=117  Identities=9%  Similarity=-0.036  Sum_probs=90.0

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce--EEEEeC---CC-----------Cc-c----
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL--QCTVEG---PR-----------GG-I----   59 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~---~~-----------~~-~----   59 (216)
                      +++++++.++..|. .+..++|||||+++++++.|+.+++||+.+++.  ..+++.   +.           +. +    
T Consensus        49 ~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~  127 (432)
T d1qksa2          49 GSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA  127 (432)
T ss_dssp             TTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEc
Confidence            36789999998774 689999999999999999999999999988753  333321   11           10 1    


Q ss_pred             -cCcEEEEEECCCcceeeeeecc-----------CCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeE
Q 043942           60 -EDSTVWMWNADRGAYLNMFSGH-----------GSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFH  118 (216)
Q Consensus        60 -~~~~v~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~  118 (216)
                       .++++++||..+++++..+..+           ......+.++|++..+ ++...++.|.+||..+++...
T Consensus       128 ~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~  199 (432)
T d1qksa2         128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK  199 (432)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred             CCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce
Confidence             7899999999999888776543           3455678899988765 566778999999998776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1.2e-19  Score=132.37  Aligned_cols=203  Identities=9%  Similarity=-0.010  Sum_probs=149.4

Q ss_pred             CCCCceeEEeecc--ccceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------
Q 043942            1 INQGDWASEILGH--KDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------   59 (216)
Q Consensus         1 l~~g~~~~~~~~h--~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------   59 (216)
                      +++++.+.++..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+....                  
T Consensus        18 ~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~   97 (337)
T d1pbyb_          18 TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred             CCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEE
Confidence            4678888888754  3457899999999987 567789999999999999988886643321                  


Q ss_pred             ---------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc
Q 043942           60 ---------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS  124 (216)
Q Consensus        60 ---------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~  124 (216)
                                     .+..+.+||..+++....+.. ...+..++|+|+++++++++.+  +.+||..+++....+....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~  174 (337)
T d1pbyb_          98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQS  174 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTT
T ss_pred             EeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCC
Confidence                           567889999999988888874 4568899999999999998755  6789999887776654311


Q ss_pred             cc----ccc----------------------------------------------c-ceEEEeeeecCeEEEEeCCCCcE
Q 043942          125 LE----FSL----------------------------------------------N-YWMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus       125 ~~----~~~----------------------------------------------~-~~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                      ..    ..+                                              . .......+...+..+.++|++.+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (337)
T d1pbyb_         175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR  254 (337)
T ss_dssp             TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceE
Confidence            00    000                                              0 00011123445667778888888


Q ss_pred             EEEecccCeE-----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942          154 LVTGCVDGKV-----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP  206 (216)
Q Consensus       154 l~~~~~~~~i-----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~  206 (216)
                      ++.+...-.+           ..+...+.+++|+|||++|++++.|+.|++||+++.+.+..++
T Consensus       255 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         255 AFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EEEccccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            7766432222           4456678999999999999999999999999999988776543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=3.4e-20  Score=140.58  Aligned_cols=199  Identities=10%  Similarity=0.072  Sum_probs=124.2

Q ss_pred             CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE--EeCCCC--------------c-c----
Q 043942            1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT--VEGPRG--------------G-I----   59 (216)
Q Consensus         1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~--------------~-~----   59 (216)
                      +++++++.++..|. .+..++|||||++|++++.|++|++||+.+++....  +.....              . +    
T Consensus        49 ~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~  127 (426)
T d1hzua2          49 GDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA  127 (426)
T ss_dssp             TTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEee
Confidence            46889999999875 589999999999999999999999999998875432  221111              0 0    


Q ss_pred             -cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcE-EEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           60 -EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKT-ICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        60 -~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                       .++.+.+||..++.....+..|...+...++.+++.. .+..+.|+...++.......+.........   ........
T Consensus       128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~  204 (426)
T d1hzua2         128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID---NLTVTSIG  204 (426)
T ss_dssp             EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS---SCEEEEEE
T ss_pred             cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc---ceeeEEec
Confidence             7899999999999888877766555544444444432 233333333333333222111111110000   00000111


Q ss_pred             eecCeEEEEeCCCCcEEEEecccCeE------------------------------------------------------
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDGKV------------------------------------------------------  163 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~~i------------------------------------------------------  163 (216)
                      +...+..+.|+|++++++++..+...                                                      
T Consensus       205 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~  284 (426)
T d1hzua2         205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD  284 (426)
T ss_dssp             CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred             cCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecc
Confidence            34445555555555555444322211                                                      


Q ss_pred             ---------------EeeeCCEEEEEEecCCCeEEE-------EeCCCcEEEEEccccccee
Q 043942          164 ---------------DGHIDAIQSLSVSAIRESLVS-------VSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       164 ---------------~~~~~~i~~~~~~~~~~~l~s-------~~~d~~v~vw~~~~~~~~~  203 (216)
                                     .+|...+..++|+|++++|++       ++.|++|+|||+++++...
T Consensus       285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~  346 (426)
T d1hzua2         285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY  346 (426)
T ss_dssp             TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred             ccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCe
Confidence                           566778999999999999994       5568999999999877543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.7e-20  Score=136.55  Aligned_cols=187  Identities=12%  Similarity=0.036  Sum_probs=125.6

Q ss_pred             eccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------------
Q 043942           11 LGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------------   59 (216)
Q Consensus        11 ~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------------   59 (216)
                      .+|.++|.+++|+|++ .+|++|+.|+.|++|+............+....                              
T Consensus        53 ~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~  132 (342)
T d1yfqa_          53 LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY  132 (342)
T ss_dssp             EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHH
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecccc
Confidence            3699999999999864 589999999999999998765444333222111                              


Q ss_pred             -----------------------------------cCcEEEEEECCCcceeee---eeccCCCeeEEEEcC-CCcEEEEe
Q 043942           60 -----------------------------------EDSTVWMWNADRGAYLNM---FSGHGSGLTCGDFTT-DGKTICTG  100 (216)
Q Consensus        60 -----------------------------------~~~~v~i~d~~~~~~~~~---~~~~~~~v~~~~~~~-~~~~l~t~  100 (216)
                                                         .++.|++||+++......   ...+...+.+..+.+ ++..++++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (342)
T d1yfqa_         133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             TTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             ccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEee
Confidence                                               567777777765443222   222334455555554 67789999


Q ss_pred             cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------Eeee
Q 043942          101 SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DGHI  167 (216)
Q Consensus       101 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~  167 (216)
                      +.|+.+.+|+...........................+...+++++|+|++++|++|+.||.|             ..+.
T Consensus       213 s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~  292 (342)
T d1yfqa_         213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             cCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            999999999987543221110000000000000011266789999999999999999999998             1223


Q ss_pred             CCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          168 DAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       168 ~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      ..+..++|+|++++|++++.|+.+++|...
T Consensus       293 ~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         293 NEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            456678899999999999999988888653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=2.5e-17  Score=120.33  Aligned_cols=204  Identities=8%  Similarity=-0.032  Sum_probs=140.6

Q ss_pred             CCCCceeEEee-ccccceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------
Q 043942            1 INQGDWASEIL-GHKDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------   59 (216)
Q Consensus         1 l~~g~~~~~~~-~h~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------   59 (216)
                      +++++++++++ .|...+.+++|+|||+++ +++..++.|++||+.+++....+.......                   
T Consensus        25 ~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~  104 (346)
T d1jmxb_          25 VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY  104 (346)
T ss_dssp             TTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             CCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEE
Confidence            46788888887 456678899999999986 566688999999999999888776433211                   


Q ss_pred             ---------------cCcEEEEEECCCcceeeeeecc--CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           60 ---------------EDSTVWMWNADRGAYLNMFSGH--GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        60 ---------------~~~~v~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                                     .+..+.+||..+++....+..+  ...+..+.+++++..++++   +.+.+||+.+++....+..
T Consensus       105 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  181 (346)
T d1jmxb_         105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPL  181 (346)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECS
T ss_pred             EEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEec
Confidence                           4667788888877655444332  3456667777777766553   4588999988887766643


Q ss_pred             ccc----ccccc-------------------------------------------------ceEEEeeeecCeEEEEeCC
Q 043942          123 SSL----EFSLN-------------------------------------------------YWMICTSLYDGVTCLSWPG  149 (216)
Q Consensus       123 ~~~----~~~~~-------------------------------------------------~~~~~~~~~~~v~~~~~~~  149 (216)
                      ...    ...+.                                                 .......+...+..+.+++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (346)
T d1jmxb_         182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP  261 (346)
T ss_dssp             TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS
T ss_pred             CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeC
Confidence            110    00000                                                 0011112444566777888


Q ss_pred             CCcEEEEecccCeE------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942          150 TSKYLVTGCVDGKV------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       150 ~~~~l~~~~~~~~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                      ++.+++....+...            ..+...+.+++|+|||++|++++.|+.|++||+++++.+..++.
T Consensus       262 ~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         262 KDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             SCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            77776665543221            33446788999999999999999999999999999998865543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=4.2e-16  Score=115.37  Aligned_cols=201  Identities=10%  Similarity=0.012  Sum_probs=130.1

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCCCCcc------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGPRGGI------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~~~~------------   59 (216)
                      ++|+.+.++..+..+  .++|+|||++|++++          .++.|.+||..+++....+..+....            
T Consensus        55 ~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (373)
T d2madh_          55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             CCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence            578888888776544  799999999999875          45789999999999988876554322            


Q ss_pred             --c-----------CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccc
Q 043942           60 --E-----------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSL  125 (216)
Q Consensus        60 --~-----------~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~  125 (216)
                        .           ++.+.+|+..+.+..    .+.....++.++|+++.+ ++.+.|+.+.+||...+...........
T Consensus       133 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~  208 (373)
T d2madh_         133 TPNNADLLFFQFAAGPAVGLVVQGGSSDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML  208 (373)
T ss_pred             EeCCCcEEEEEEcCCCceEEeeccCCeEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecc
Confidence              2           233334444333322    233456788999998755 6788999999999987765543322100


Q ss_pred             -----------cccccceEEEee---------------------------------eecCeEEEEeCCCCcEEEEecccC
Q 043942          126 -----------EFSLNYWMICTS---------------------------------LYDGVTCLSWPGTSKYLVTGCVDG  161 (216)
Q Consensus       126 -----------~~~~~~~~~~~~---------------------------------~~~~v~~~~~~~~~~~l~~~~~~~  161 (216)
                                 ........+...                                 .......+++++++..++....++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  288 (373)
T d2madh_         209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ  288 (373)
T ss_pred             ccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCC
Confidence                       000000000000                                 111223456666666555443322


Q ss_pred             ----------eE-------------EeeeCCEEEEEEecCCCe--EEEEeCCCcEEEEEcccccceeecCCc
Q 043942          162 ----------KV-------------DGHIDAIQSLSVSAIRES--LVSVSVDGTARVFEIAEFRRATKAPSY  208 (216)
Q Consensus       162 ----------~i-------------~~~~~~i~~~~~~~~~~~--l~s~~~d~~v~vw~~~~~~~~~~~~~~  208 (216)
                                .+             ..+...+..++|+|||+.  +++++.|+.|++||+.+++.+..++.+
T Consensus       289 ~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         289 SAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             ceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence                      22             345567899999999984  467889999999999999988877643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=6.1e-17  Score=122.53  Aligned_cols=196  Identities=10%  Similarity=-0.000  Sum_probs=133.4

Q ss_pred             ccccceEEEEEccCCCEEEE-EcCCCcEEEEECCCCceEEEEeCCCCcc----------------------------cCc
Q 043942           12 GHKDSFSSLAFSTDGQLLAS-GGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------------------EDS   62 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------------------~~~   62 (216)
                      +|.+.+.+++|+|||+++++ +..++.+++||..+++....+..+....                            ..+
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence            56777888899999998754 4578999999999998888776544322                            223


Q ss_pred             EEEEEECCCccee-eeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeeccccc--------------
Q 043942           63 TVWMWNADRGAYL-NMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLE--------------  126 (216)
Q Consensus        63 ~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~--------------  126 (216)
                      .+.+++....... .....+...+..++|+|++++++++. .+..+.+++..+++.+.........              
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence            3333433332221 12234667788999999999877665 6778999999988877655432100              


Q ss_pred             ------cc-------------------ccceEEEeeeecCeEEEEeCCCCcEEEE-------ecccCeE-----------
Q 043942          127 ------FS-------------------LNYWMICTSLYDGVTCLSWPGTSKYLVT-------GCVDGKV-----------  163 (216)
Q Consensus       127 ------~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~-------~~~~~~i-----------  163 (216)
                            ..                   ........+|...+..++|+|+++++++       +..++.+           
T Consensus       266 ~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~  345 (426)
T d1hzua2         266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  345 (426)
T ss_dssp             EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             ceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcC
Confidence                  00                   0111223346777899999999999995       3345555           


Q ss_pred             ------------EeeeCCEEEEEEecCCCeEE-EE----eCCCcEEEEEcccccceeecCC
Q 043942          164 ------------DGHIDAIQSLSVSAIRESLV-SV----SVDGTARVFEIAEFRRATKAPS  207 (216)
Q Consensus       164 ------------~~~~~~i~~~~~~~~~~~l~-s~----~~d~~v~vw~~~~~~~~~~~~~  207 (216)
                                  ..+...+..++|||||++++ ++    +.++.|+|||.++.+....+..
T Consensus       346 ~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~  406 (426)
T d1hzua2         346 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  406 (426)
T ss_dssp             CEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             eEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECC
Confidence                        13445689999999999774 33    3578999999999887665544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=6.9e-18  Score=120.88  Aligned_cols=111  Identities=22%  Similarity=0.274  Sum_probs=89.7

Q ss_pred             ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942           12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT   91 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~   91 (216)
                      .|...+++++|+|++++|++++.||.|++||+.+++..                         ...+.+|...|.+++|+
T Consensus       160 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-------------------------~~~~~~h~~~v~~~~~~  214 (287)
T d1pgua2         160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-------------------------TSRWAFRTSKINAISWK  214 (287)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-------------------------ECCSCCCSSCEEEEEEC
T ss_pred             ccCCceeEEEeccCccccccccccccccceeecccccc-------------------------cccccccccccceeeec
Confidence            47788999999999999999998888888887654321                         12356788999999998


Q ss_pred             CC----------CcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           92 TD----------GKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        92 ~~----------~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      |.          +.++++|+.|+.|++||++++. .+..+..               |...|++++|+|++ .+++++.|
T Consensus       215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~---------------h~~~V~~v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA---------------HKDGVNNLLWETPS-TLVSSGAD  278 (287)
T ss_dssp             CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS---------------STTCEEEEEEEETT-EEEEEETT
T ss_pred             ccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC---------------CCCCeEEEEECCCC-EEEEEECC
Confidence            74          4689999999999999998744 4455554               88999999999986 47888888


Q ss_pred             CeE
Q 043942          161 GKV  163 (216)
Q Consensus       161 ~~i  163 (216)
                      +.+
T Consensus       279 ~~v  281 (287)
T d1pgua2         279 ACI  281 (287)
T ss_dssp             SCE
T ss_pred             CeE
Confidence            876

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=1.2e-16  Score=116.19  Aligned_cols=161  Identities=12%  Similarity=0.089  Sum_probs=126.1

Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------cCcEEEEEECCCcceeeeeeccCC----
Q 043942           27 QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------EDSTVWMWNADRGAYLNMFSGHGS----   83 (216)
Q Consensus        27 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------~~~~v~i~d~~~~~~~~~~~~~~~----   83 (216)
                      +++++++.|++|++||+.+++.+.++..+....                   .++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            589999999999999999999999987643311                   688999999999999888765533    


Q ss_pred             -CeeEEEEcCCCcEEEEec------------CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           84 -GLTCGDFTTDGKTICTGS------------DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        84 -~v~~~~~~~~~~~l~t~~------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                       .+..++|+|+++.++++.            .+..+.+||..+++....+.                ....+..++|+|+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----------------~~~~~~~~~~s~d  145 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE----------------APRQITMLAWARD  145 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE----------------CCSSCCCEEECTT
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc----------------ccCCceEEEEcCC
Confidence             456899999999998776            35778899999888877776                4456778889999


Q ss_pred             CcEEEEecccCeE-------------------------------------------------------------------
Q 043942          151 SKYLVTGCVDGKV-------------------------------------------------------------------  163 (216)
Q Consensus       151 ~~~l~~~~~~~~i-------------------------------------------------------------------  163 (216)
                      |+++++++.+..+                                                                   
T Consensus       146 g~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             SSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             CCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence            9888887765443                                                                   


Q ss_pred             -----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942          164 -----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA  205 (216)
Q Consensus       164 -----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~  205 (216)
                                 ..+...+..+.++|++.+++.+  ++.+++||+.+++....+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~  276 (337)
T d1pbyb_         226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             cCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE
Confidence                       2234456677788888887655  589999999998876654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=2e-16  Score=119.92  Aligned_cols=177  Identities=10%  Similarity=-0.055  Sum_probs=127.6

Q ss_pred             ccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCccee--eee---eccC
Q 043942           23 STDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAYL--NMF---SGHG   82 (216)
Q Consensus        23 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~--~~~---~~~~   82 (216)
                      +++.-++++.+.|++|.+||..+++.+..+..+....               .|+++++||+.+++..  ..+   ..|.
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~  108 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  108 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence            3333346899999999999999999999998765422               7899999999876532  222   3455


Q ss_pred             CCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE-Eeccc
Q 043942           83 SGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV-TGCVD  160 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~  160 (216)
                      +.+.+.+|+|||++| ++++.++.+++||..+++.+..+..........    ..........+.++|++..++ +...+
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ----EYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC----CEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccce----eccCCCceeEEEECCCCCEEEEEEccC
Confidence            666777888999976 678889999999999999888776522111100    001445567788899887654 44555


Q ss_pred             CeE---------------EeeeCCEEEEEEecCCCeEEEEeC-CCcEEEEEccccccee
Q 043942          161 GKV---------------DGHIDAIQSLSVSAIRESLVSVSV-DGTARVFEIAEFRRAT  203 (216)
Q Consensus       161 ~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~~~~~~  203 (216)
                      +.+               ..+...+..++|+|+|+++++++. ++.+.+++..+.+...
T Consensus       185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEE
Confidence            555               244567889999999998877665 5688999988766554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.2e-16  Score=117.45  Aligned_cols=200  Identities=11%  Similarity=0.007  Sum_probs=128.0

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCCCCcc------------
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGPRGGI------------   59 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~~~~------------   59 (216)
                      .+|+++.++..+..+  .++|||||++|++++          .|+.|++||..+++....+..+....            
T Consensus        36 ~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (355)
T d2bbkh_          36 EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  113 (355)
T ss_dssp             TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             CCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE
Confidence            578888888766544  799999999887653          47899999999999888876433211            


Q ss_pred             -------------cCcEEEEEECCCcceeeeeecc---------------------------------------------
Q 043942           60 -------------EDSTVWMWNADRGAYLNMFSGH---------------------------------------------   81 (216)
Q Consensus        60 -------------~~~~v~i~d~~~~~~~~~~~~~---------------------------------------------   81 (216)
                                   .+..+.+|+..+++.+..+..+                                             
T Consensus       114 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~  193 (355)
T d2bbkh_         114 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED  193 (355)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred             ecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee
Confidence                         4566778888776554433211                                             


Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec--ccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR--SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      ...+....+.+++..++.++.++.+++|++..++.......  .........     ........+++++++..++....
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~d~~~~~~~~~  268 (355)
T d2bbkh_         194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG-----WRPGGWQQVAYHRALDRIYLLVD  268 (355)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT-----EEECSSSCEEEETTTTEEEEEEE
T ss_pred             cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeee-----eeccceEEEEEeCCCCeEEEEec
Confidence            11122344555566677777788888888876653221110  000000000     02233445778888887766544


Q ss_pred             cCe----------E-------------EeeeCCEEEEEEecCCC--eEEEEeCCCcEEEEEcccccceeecCCc
Q 043942          160 DGK----------V-------------DGHIDAIQSLSVSAIRE--SLVSVSVDGTARVFEIAEFRRATKAPSY  208 (216)
Q Consensus       160 ~~~----------i-------------~~~~~~i~~~~~~~~~~--~l~s~~~d~~v~vw~~~~~~~~~~~~~~  208 (216)
                      ++.          +             ..+...+.+++|+|||+  ++++++.|+.|++||+++++.+..++..
T Consensus       269 ~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         269 QRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             cCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            332          1             23445678999999998  3456778999999999999988776543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.3e-15  Score=109.40  Aligned_cols=203  Identities=10%  Similarity=0.024  Sum_probs=122.2

Q ss_pred             ccccceEEEEEccCCCEEEE-EcCCCcEEEEECCCCceEEEE----eCCCCcc----------------cCcEEEEEECC
Q 043942           12 GHKDSFSSLAFSTDGQLLAS-GGFHGLVQNRDTSSRNLQCTV----EGPRGGI----------------EDSTVWMWNAD   70 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~----~~~~~~~----------------~~~~v~i~d~~   70 (216)
                      .|.+.+..++|+|||++|++ +..|+.|++|++.......++    .....+.                .++.+.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            57889999999999998855 455899999999765432222    2211111                56678888776


Q ss_pred             Ccceee--eeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeec-----c------cccccccc--eEE
Q 043942           71 RGAYLN--MFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRR-----S------SLEFSLNY--WMI  134 (216)
Q Consensus        71 ~~~~~~--~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~-----~------~~~~~~~~--~~~  134 (216)
                      ......  ....+...+.++.++|+++++++++ .+..+.+|+............     .      .+.+....  ...
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence            554332  2334666788999999999887766 556799999876533221111     0      00000000  000


Q ss_pred             E----------e---------------------eeecCeEEEEeCCCCcEEEEecc-cCeE-----------------Ee
Q 043942          135 C----------T---------------------SLYDGVTCLSWPGTSKYLVTGCV-DGKV-----------------DG  165 (216)
Q Consensus       135 ~----------~---------------------~~~~~v~~~~~~~~~~~l~~~~~-~~~i-----------------~~  165 (216)
                      .          .                     ........+++++++++++.... ++.+                 ..
T Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (333)
T d1ri6a_         194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP  273 (333)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred             eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC
Confidence            0          0                     01223556788999987665543 3333                 12


Q ss_pred             eeCCEEEEEEecCCCeEEEEe-CCCcEEEEEc--cccc--ceeecCCcceeEEE
Q 043942          166 HIDAIQSLSVSAIRESLVSVS-VDGTARVFEI--AEFR--RATKAPSYSFKLFF  214 (216)
Q Consensus       166 ~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~--~~~~--~~~~~~~~~~~~~~  214 (216)
                      ....+.+++|+|||++|++++ .++.|++|++  ++++  ....++.-..+.++
T Consensus       274 ~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~p~~v  327 (333)
T d1ri6a_         274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWV  327 (333)
T ss_dssp             CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEE
T ss_pred             CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCCCCcEE
Confidence            234567899999999887765 4689999965  4443  23344433334433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.68  E-value=7.7e-14  Score=99.70  Aligned_cols=159  Identities=12%  Similarity=0.081  Sum_probs=123.8

Q ss_pred             EEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942           29 LASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT   92 (216)
Q Consensus        29 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~   92 (216)
                      +++.+.|++|.+||+.+++.++++.....+.                .++.|++||+.+++.+..+..+. .+..++|++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence            4567789999999999999998887654322                67899999999999999888665 478999999


Q ss_pred             CCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-ccCeE-------
Q 043942           93 DGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-VDGKV-------  163 (216)
Q Consensus        93 ~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~i-------  163 (216)
                      ++..+ +++..++.+.+|+..+++....+.                .......+.|+|++..++..+ .++.+       
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~  147 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVK----------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT  147 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEE----------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccccccccccccceeeecccccceeeeecc----------------ccccceEEEeecCCCeeeeeeccccceeeeeccc
Confidence            98865 456688899999999998888776                456678899999998876544 44444       


Q ss_pred             ------EeeeCCEEEEEEecCCCeEEEEeCC-CcEEEEEcccccceee
Q 043942          164 ------DGHIDAIQSLSVSAIRESLVSVSVD-GTARVFEIAEFRRATK  204 (216)
Q Consensus       164 ------~~~~~~i~~~~~~~~~~~l~s~~~d-~~v~vw~~~~~~~~~~  204 (216)
                            ..+...+..+.++|+++++++++.+ +.+.+|+....+....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (301)
T ss_dssp             TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeec
Confidence                  3445668899999999988877665 6677787766554443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.64  E-value=7.4e-15  Score=106.99  Aligned_cols=98  Identities=11%  Similarity=0.115  Sum_probs=78.6

Q ss_pred             EEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-cc-----------------cCcEEEEEECCCcceeeeeecc
Q 043942           20 LAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-GI-----------------EDSTVWMWNADRGAYLNMFSGH   81 (216)
Q Consensus        20 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~-----------------~~~~v~i~d~~~~~~~~~~~~~   81 (216)
                      ++|++++++|++++.+++|.+||+.+++.+.++..+.. ..                 .++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            47899999999999999999999999999998875322 11                 6889999999999888766532


Q ss_pred             C------CCeeEEEEcCCCcEEEEec------------CCCeEEEEeCCCCcee
Q 043942           82 G------SGLTCGDFTTDGKTICTGS------------DNATLSIWNPKGGENF  117 (216)
Q Consensus        82 ~------~~v~~~~~~~~~~~l~t~~------------~d~~i~~wd~~~~~~~  117 (216)
                      .      ..+..++|+|||+++++++            .+..+.+||..+++..
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  135 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence            2      2466899999999988765            4677899998876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=7.1e-14  Score=103.41  Aligned_cols=103  Identities=8%  Similarity=-0.092  Sum_probs=65.1

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH   81 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~   81 (216)
                      .+++.+.++..+..+  .++|+|||+.|++++..+.    ....+.            .++.|.+||..+++++..+..+
T Consensus        54 ~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~----~~~~g~------------~d~~v~v~D~~t~~~~~~i~~p  115 (368)
T d1mdah_          54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFA----RSAKGK------------RTDYVEVFDPVTFLPIADIELP  115 (368)
T ss_dssp             TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEET----TTTSSS------------EEEEEEEECTTTCCEEEEEEET
T ss_pred             CCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCc----cccccc------------cCCeEEEEECCCCcEeeeecCC
Confidence            356677777766544  5899999998887652100    000000            3444555555555555444332


Q ss_pred             C-------CCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeec
Q 043942           82 G-------SGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        82 ~-------~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .       .....++|+|||++++++. .++.+.+||+.+++....+..
T Consensus       116 ~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_         116 DAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             TSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred             ccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence            2       2234689999999998775 579999999999887766543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.54  E-value=3.9e-13  Score=99.17  Aligned_cols=162  Identities=11%  Similarity=-0.037  Sum_probs=111.4

Q ss_pred             eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEE
Q 043942           10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGD   89 (216)
Q Consensus        10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~   89 (216)
                      ...+..++.+++++|||+.++.......-                     ..+.|.+||..+++.+.++..+..  ..++
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~---------------------~~~~v~v~D~~tg~~~~~~~~~~~--~~~a   72 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHS---------------------AIIQQWVLDAGSGSILGHVNGGFL--PNPV   72 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccC---------------------CCceEEEEECCCCCEEEEEeCCCC--ccEE
Confidence            34678899999999999988765421100                     345567777777777777665543  3799


Q ss_pred             EcCCCcEEEEec----------CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942           90 FTTDGKTICTGS----------DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus        90 ~~~~~~~l~t~~----------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      |+|||+++++++          .++.|.+||..+++....+........        ........+.|+++++.++....
T Consensus        73 ~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~~~v~~~  144 (373)
T d2madh_          73 AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF--------DVGPYSWMNANTPNNADLLFFQF  144 (373)
T ss_pred             EcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCccee--------EeccCCCcEEEEeCCCcEEEEEE
Confidence            999999998874          467899999999998877764211000        01122345778888887665443


Q ss_pred             c--CeE----------EeeeCCEEEEEEecCCCeE-EEEeCCCcEEEEEcccccce
Q 043942          160 D--GKV----------DGHIDAIQSLSVSAIRESL-VSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       160 ~--~~i----------~~~~~~i~~~~~~~~~~~l-~s~~~d~~v~vw~~~~~~~~  202 (216)
                      +  +.+          ..+......+.++|+++.+ ++.+.|+.+.+|+....+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         145 AAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             cCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence            2  222          4555667788999998755 67888999999998876544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.9e-13  Score=99.11  Aligned_cols=109  Identities=11%  Similarity=0.121  Sum_probs=80.1

Q ss_pred             ccCCCeeEEEEcCCCcEEEE-ecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942           80 GHGSGLTCGDFTTDGKTICT-GSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        80 ~~~~~v~~~~~~~~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  158 (216)
                      .|.+.+..++|+|||++|++ +..|+.|++|++........+...            ......+..++|+|||+++++++
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~------------~~~~~~p~~l~~spDg~~l~v~~  101 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE------------SALPGSLTHISTDHQGQFVFVGS  101 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE------------EECSSCCSEEEECTTSSEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee------------cccCCCceEEEEcCCCCEEeecc
Confidence            47788999999999998855 456899999999876543332210            01345577899999999999887


Q ss_pred             c-cCeE----------------EeeeCCEEEEEEecCCCeEEEEeC-CCcEEEEEccccc
Q 043942          159 V-DGKV----------------DGHIDAIQSLSVSAIRESLVSVSV-DGTARVFEIAEFR  200 (216)
Q Consensus       159 ~-~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~~~  200 (216)
                      . ++.+                ..+...+.++.++|++++++.++. +..+.+|+.....
T Consensus       102 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_         102 YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            5 4444                334456778899999998887765 5679999987643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.45  E-value=1.2e-12  Score=99.79  Aligned_cols=140  Identities=11%  Similarity=0.132  Sum_probs=91.1

Q ss_pred             CCCceeEEee-----ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceee
Q 043942            2 NQGDWASEIL-----GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLN   76 (216)
Q Consensus         2 ~~g~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~   76 (216)
                      ++|+....+.     .|...|.++.|||||++|+.++.  ..++|...               .++.+.+||+.+++. .
T Consensus        44 ~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~--~~~~~r~s---------------~~~~~~l~d~~~~~~-~  105 (470)
T d2bgra1          44 EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN--YVKQWRHS---------------YTASYDIYDLNKRQL-I  105 (470)
T ss_dssp             TTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEE--EEECSSSC---------------EEEEEEEEETTTTEE-C
T ss_pred             CCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEEC--Ccceeeec---------------cCceEEEEECCCCcc-c
Confidence            4555544343     45578999999999999998873  23444432               567889999998764 4


Q ss_pred             eeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccc---eEEEeeeecCeEEEEeCCCCcE
Q 043942           77 MFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNY---WMICTSLYDGVTCLSWPGTSKY  153 (216)
Q Consensus        77 ~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~  153 (216)
                      .+..+...+..+.|+|||+.+|.. .++.+++|+..+++..+.............   +............+.|+|||+.
T Consensus       106 ~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~  184 (470)
T d2bgra1         106 TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF  184 (470)
T ss_dssp             CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE
T ss_pred             ccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCc
Confidence            577788899999999999999986 567899999998876654332110000000   0000001223445678888887


Q ss_pred             EEEeccc
Q 043942          154 LVTGCVD  160 (216)
Q Consensus       154 l~~~~~~  160 (216)
                      |+....|
T Consensus       185 ia~~~~d  191 (470)
T d2bgra1         185 LAYAQFN  191 (470)
T ss_dssp             EEEEEEE
T ss_pred             cceeEec
Confidence            7776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=1.2e-11  Score=90.26  Aligned_cols=178  Identities=10%  Similarity=-0.098  Sum_probs=125.0

Q ss_pred             ceEEEEEccCCCEEEEEc-----CCCcEEEEECCCCceEEEEeCCCCcc------------------------cCcEEEE
Q 043942           16 SFSSLAFSTDGQLLASGG-----FHGLVQNRDTSSRNLQCTVEGPRGGI------------------------EDSTVWM   66 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~-----~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------~~~~v~i   66 (216)
                      ++.-.+.+||++.++...     .+..|.+||..+++.+.++..+....                        .++.|++
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            334446789999887653     45679999999999988886543321                        3678999


Q ss_pred             EECCCcceeeeeeccC-------CCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           67 WNADRGAYLNMFSGHG-------SGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        67 ~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      ||+.+++.+..+..+.       .....++|+|++++++.++  .+..+.+||..+++.+..+......        ...
T Consensus        83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  154 (355)
T d2bbkh_          83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY--------HIF  154 (355)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE--------EEE
T ss_pred             EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc--------eEe
Confidence            9999998887765433       2345689999999887764  5678999999999888776542110        001


Q ss_pred             eecCeEEEEeCCCCcEEEEecccC-eE---------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942          138 LYDGVTCLSWPGTSKYLVTGCVDG-KV---------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR  201 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~~~~~-~i---------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~  201 (216)
                      .......+.++++++.++....+. .+         ..+...+....+.+++..++.++.++.+++|++..++.
T Consensus       155 ~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA  228 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC
T ss_pred             ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE
Confidence            233455677888888777654433 22         22233455567888888899999999999999987653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.38  E-value=1.2e-12  Score=99.80  Aligned_cols=141  Identities=16%  Similarity=0.166  Sum_probs=97.3

Q ss_pred             EEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942           18 SSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI   97 (216)
Q Consensus        18 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   97 (216)
                      ..+.|.++++++..  .|+.+.+||+.+++....+..                     ..+..|...|.++.|+||+++|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~---------------------~~~~~~~~~i~~~~~SpDg~~i   76 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLEN---------------------STFDEFGHSINDYSISPDGQFI   76 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECT---------------------TTTTTSSSCCCEEEECTTSSEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEch---------------------hhhhhccCccceeEECCCCCEE
Confidence            35789999887654  356677777776654333221                     1344566789999999999999


Q ss_pred             EEecC---------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----
Q 043942           98 CTGSD---------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----  163 (216)
Q Consensus        98 ~t~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----  163 (216)
                      +.++.         ++.+.+||+.+++.. .+..               +...+..+.|+|||+.++........     
T Consensus        77 ~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~---------------~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~  140 (470)
T d2bgra1          77 LLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEER---------------IPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP  140 (470)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSC---------------CCTTEEEEEECSSTTCEEEEETTEEEEESST
T ss_pred             EEEECCcceeeeccCceEEEEECCCCccc-cccc---------------CCccccccccccCcceeeEeecccceEEECC
Confidence            98753         567899999987643 3443               77889999999999999886543322     


Q ss_pred             ---------E-----------------eeeCCEEEEEEecCCCeEEEEeCCCc-EEEEEcc
Q 043942          164 ---------D-----------------GHIDAIQSLSVSAIRESLVSVSVDGT-ARVFEIA  197 (216)
Q Consensus       164 ---------~-----------------~~~~~i~~~~~~~~~~~l~s~~~d~~-v~vw~~~  197 (216)
                               .                 ...+....+.|||||++|+....|.. +..|.+.
T Consensus       141 ~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~  201 (470)
T d2bgra1         141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS  201 (470)
T ss_dssp             TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             CCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEE
Confidence                     0                 01123455789999999998876533 5555543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=1.3e-10  Score=86.74  Aligned_cols=156  Identities=12%  Similarity=0.036  Sum_probs=110.2

Q ss_pred             EEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------------------------------cC
Q 043942           29 LASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------------------------------ED   61 (216)
Q Consensus        29 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------------------------------~~   61 (216)
                      ++|++.+|.|++|++.+++.++++..-....                                               .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            6788899999999999999998875421100                                               78


Q ss_pred             cEEEEEECCCcceeeeeec-cCCCeeEEEEcCCCcE--EEEecCCC-----------------eEEEEeCCCCceeEEee
Q 043942           62 STVWMWNADRGAYLNMFSG-HGSGLTCGDFTTDGKT--ICTGSDNA-----------------TLSIWNPKGGENFHAIR  121 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~t~~~d~-----------------~i~~wd~~~~~~~~~~~  121 (216)
                      +.|.++|+.+.+....+.- +...+..++|+|+++.  ++..+.+.                 .+..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            8899999999988776653 4567899999999984  44433332                 23446666666555554


Q ss_pred             cccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------------------------------
Q 043942          122 RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------------------------------  163 (216)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------------------------------  163 (216)
                                      -......+.++|+|+++++.+.+...                                      
T Consensus       174 ----------------v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~  237 (441)
T d1qnia2         174 ----------------VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS  237 (441)
T ss_dssp             ----------------ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred             ----------------cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence                            23456788899999988877654311                                      


Q ss_pred             ----------------EeeeCCEEEEEEecCCCeEEE-EeCCCcEEEEEccccc
Q 043942          164 ----------------DGHIDAIQSLSVSAIRESLVS-VSVDGTARVFEIAEFR  200 (216)
Q Consensus       164 ----------------~~~~~~i~~~~~~~~~~~l~s-~~~d~~v~vw~~~~~~  200 (216)
                                      ..-......+.++|||+++++ +..+++|.|||+...+
T Consensus       238 ~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~  291 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD  291 (441)
T ss_dssp             CCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred             CcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhh
Confidence                            111223467899999998765 5669999999987643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=2.9e-10  Score=83.61  Aligned_cols=60  Identities=13%  Similarity=0.158  Sum_probs=49.7

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcE--EEEecCCCeEEEEeCCCCceeEEeec
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKT--ICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      ..+.+||..+++.+..+. +...+..++|+|||+.  ++++..|+.|++||..+++.+..++.
T Consensus       294 ~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         294 ENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             ceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            357889999998887776 4466889999999973  46777899999999999999888874

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.13  E-value=1.2e-08  Score=74.86  Aligned_cols=161  Identities=7%  Similarity=0.010  Sum_probs=94.0

Q ss_pred             ceEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeee--eccCCCeeEEEEcC
Q 043942           16 SFSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMF--SGHGSGLTCGDFTT   92 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~--~~~~~~v~~~~~~~   92 (216)
                      .+.++.|+|||+++++++. ...|.+|+......+                       ......  .........++|+|
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~-----------------------~~~~~~~~~~~g~gPr~i~f~p  202 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-----------------------ELVGSVDAPDPGDHPRWVAMHP  202 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-----------------------EEEEEEECSSTTCCEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCce-----------------------eeccceeecCCCCceEEEEECC
Confidence            4679999999998887764 234555543321100                       001111  12345688999999


Q ss_pred             CCcEEEE-ecCCCeEEEEeCCCCceeEEeecccccccccce----EEEeeeecCeEEEEeCCCCcEEEEeccc--C----
Q 043942           93 DGKTICT-GSDNATLSIWNPKGGENFHAIRRSSLEFSLNYW----MICTSLYDGVTCLSWPGTSKYLVTGCVD--G----  161 (216)
Q Consensus        93 ~~~~l~t-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~----  161 (216)
                      +++++.+ .-.++.|.+|++..++.................    ............+.++|+|++++++...  .    
T Consensus       203 dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~  282 (365)
T d1jofa_         203 TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG  282 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCC
T ss_pred             CCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccce
Confidence            9998754 557899999999866543222211000000000    0000022345678999999998876431  1    


Q ss_pred             eE--------------------EeeeCCEEEEEEec-CCCeEEEEe-CCCcEEEEEcccc
Q 043942          162 KV--------------------DGHIDAIQSLSVSA-IRESLVSVS-VDGTARVFEIAEF  199 (216)
Q Consensus       162 ~i--------------------~~~~~~i~~~~~~~-~~~~l~s~~-~d~~v~vw~~~~~  199 (216)
                      .+                    .........++++| +|++|+++. .++.|.+|++...
T Consensus       283 ~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            12                    01123456789998 789887665 5799999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.1e-07  Score=66.39  Aligned_cols=182  Identities=13%  Similarity=0.055  Sum_probs=101.7

Q ss_pred             CCceeEEeeccccceEEEEEccCCCEEEEEcCCC---cEEEEECCCCceEEEEeCCCCcc-----cCcE-EEEEECCC--
Q 043942            3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHG---LVQNRDTSSRNLQCTVEGPRGGI-----EDST-VWMWNADR--   71 (216)
Q Consensus         3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~~-----~~~~-v~i~d~~~--   71 (216)
                      +|.-.+.+..+...+...+|||||+.||-.....   .+.+.+...+.............     .++. +.+.....  
T Consensus        27 dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~  106 (269)
T d2hqsa1          27 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGS  106 (269)
T ss_dssp             TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             CCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCc
Confidence            3444555666677888999999999999765432   46666666665443332221111     1221 11111111  


Q ss_pred             ----------cceeeeeeccCCCeeEEEEcCCCcEEEE-ecCCC--eEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           72 ----------GAYLNMFSGHGSGLTCGDFTTDGKTICT-GSDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        72 ----------~~~~~~~~~~~~~v~~~~~~~~~~~l~t-~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                                ..... ............+++++..+.. ...++  .+...++..+.......                .
T Consensus       107 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~----------------~  169 (269)
T d2hqsa1         107 LNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW----------------E  169 (269)
T ss_dssp             CEEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC----------------S
T ss_pred             cceeeccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccceeeec----------------c
Confidence                      11111 1122333445556666655443 33444  35555655443332222                4


Q ss_pred             ecCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeC---CCcEEEEEccccc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSV---DGTARVFEIAEFR  200 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~---d~~v~vw~~~~~~  200 (216)
                      ........|+|+++.++..+.++..               ...........|+|||+.|+..+.   ...++++++....
T Consensus       170 ~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         170 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             cccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            4556677899999988876655422               223345677899999999875543   3468889987655


Q ss_pred             c
Q 043942          201 R  201 (216)
Q Consensus       201 ~  201 (216)
                      .
T Consensus       250 ~  250 (269)
T d2hqsa1         250 K  250 (269)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.02  E-value=1.6e-08  Score=75.36  Aligned_cols=184  Identities=12%  Similarity=-0.008  Sum_probs=109.4

Q ss_pred             ccccceEEEEEccCCCEEEEE-cCCCcEEEEECCCCceEEEEeCCCCcc--------cC---------------------
Q 043942           12 GHKDSFSSLAFSTDGQLLASG-GFHGLVQNRDTSSRNLQCTVEGPRGGI--------ED---------------------   61 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~--------~~---------------------   61 (216)
                      .|.........+|||++|+.. ..+..|.++|+.+++..+.++.+....        ..                     
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            355556666778999988655 577899999999999888776543211        11                     


Q ss_pred             -------cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC-eEEEEeCCCCceeEEe---ec--------
Q 043942           62 -------STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA-TLSIWNPKGGENFHAI---RR--------  122 (216)
Q Consensus        62 -------~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~-~i~~wd~~~~~~~~~~---~~--------  122 (216)
                             ..+..+|..+.+...++.. .+....++++|+|+++++++.+. .+..++..+.+....+   ..        
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                   1234466666666655553 34578899999999988776442 2222222111111000   00        


Q ss_pred             ---------cc---ccc-c-ccceEEEeeeecCeEEEEeCCCCcEEEE-ecccCeE----------------------E-
Q 043942          123 ---------SS---LEF-S-LNYWMICTSLYDGVTCLSWPGTSKYLVT-GCVDGKV----------------------D-  164 (216)
Q Consensus       123 ---------~~---~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~~i----------------------~-  164 (216)
                               ..   +.. . ........ .......+.++|||+++++ +..++.+                      . 
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IP-vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIP-VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEEC-CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEe-CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence                     00   000 0 00000000 2233567899999998765 4556666                      0 


Q ss_pred             --eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          165 --GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       165 --~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                        ...-......|+++|..+.+...|..|..|++.
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ecccccCcccceecCCceEEEcccccceEEEeccc
Confidence              011124556899999888888999999999985

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=7.1e-08  Score=67.33  Aligned_cols=167  Identities=10%  Similarity=0.050  Sum_probs=106.7

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc--c---cCcEEEEEECCCcceee---------ee-ec
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG--I---EDSTVWMWNADRGAYLN---------MF-SG   80 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--~---~~~~v~i~d~~~~~~~~---------~~-~~   80 (216)
                      ....++++++++++++....+.+++++-.+............+  +   .++.+.+-|....+...         .. ..
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            3568899999998888777777777665555443332221111  1   45556655543322111         11 11


Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD  160 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  160 (216)
                      -......++++|+++.+++...++.|..+|....... .+...              .......++++++|+++++...+
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~--------------~~~~p~gi~~d~~g~l~vsd~~~  202 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFT--------------DITAPWGIAVDEAGTVYVTEHNT  202 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCS--------------SCCSEEEEEECTTCCEEEEETTT
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccceee-eeecc--------------ccCCCccceeeeeeeeeeeecCC
Confidence            1234678999999998888888899999998754332 22210              33556889999999888887777


Q ss_pred             CeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942          161 GKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA  197 (216)
Q Consensus       161 ~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~  197 (216)
                      +.+              ...-.....++++++|+++++-..++.|+..+..
T Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         203 NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            776              1122456899999999887776667777665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=6.6e-07  Score=62.93  Aligned_cols=168  Identities=11%  Similarity=0.109  Sum_probs=108.7

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------cCcEEEEEECCC
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------EDSTVWMWNADR   71 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------~~~~v~i~d~~~   71 (216)
                      ....++++++|+.+++-.....|++||.+ ++.+..+.......                        .++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            46899999999988887788899999965 66665553211100                        23344444432 


Q ss_pred             cceeeeee-ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           72 GAYLNMFS-GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        72 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      +.....+. ........+++.++++.+++....+.+.+++.. ++.+..+....             +......+++.++
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~-------------~~~~~~~i~~d~~  167 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK-------------HLEFPNGVVVNDK  167 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------------TCSSEEEEEECSS
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccc-------------cccccceeeeccc
Confidence            33333332 233456789999999988888888888888865 55555553211             3345566777777


Q ss_pred             CcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeC-CCcEEEEEccccc
Q 043942          151 SKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSV-DGTARVFEIAEFR  200 (216)
Q Consensus       151 ~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~~~  200 (216)
                      ++.+++....+.+               .+.......++++++|+.+++-.. ++.|.+|+. +++
T Consensus       168 g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~  232 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQ  232 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSC
T ss_pred             eeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCC
Confidence            7766666655555               112345788999999997777544 456888874 344

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.95  E-value=7.9e-08  Score=68.59  Aligned_cols=80  Identities=13%  Similarity=0.181  Sum_probs=54.8

Q ss_pred             ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942            5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG   84 (216)
Q Consensus         5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~   84 (216)
                      +.+.++... ..+..++++|||+++++...++.|..|+....                            ...+......
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~----------------------------~~~~~~~~~~   69 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN----------------------------QQIHATVEGK   69 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC----------------------------EEEEEECSSE
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC----------------------------EEEEEcCCCC
Confidence            344445432 25789999999999999887777766664311                            1122234466


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPKG  113 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~  113 (216)
                      +.+++|+++|+++++...++.+..|+...
T Consensus        70 ~~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          70 VSGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             cceEEEcCCCCeEEEecCCceEEEEEecc
Confidence            88899999999888887777777777653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=2.2e-06  Score=60.20  Aligned_cols=105  Identities=7%  Similarity=0.043  Sum_probs=73.8

Q ss_pred             cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-
Q 043942           81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-  159 (216)
Q Consensus        81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  159 (216)
                      +......+++.++++.+++....+.|++||.. ++.+..+....             .......++++++|+++++-.. 
T Consensus       155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g-------------~~~~P~giavD~~G~i~Vad~~~  220 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG-------------ITNYPIGVGINSNGEILIADNHN  220 (279)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT-------------TSCSEEEEEECTTCCEEEEECSS
T ss_pred             cccccceeeeccceeEEeeeccccceeeeecC-Cceeeeecccc-------------cccCCcccccccCCeEEEEECCC
Confidence            44567889999999999888899999999976 66666653211             2334667888888886665433 


Q ss_pred             cCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          160 DGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       160 ~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ++.+               .........+++.|+|+++++ +.++.|++|......
T Consensus       221 ~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         221 NFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             SCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeeec
Confidence            2233               111235789999999986654 568999999987653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=3e-07  Score=64.08  Aligned_cols=154  Identities=14%  Similarity=0.073  Sum_probs=94.2

Q ss_pred             ceeEEeeccc--cceEEEEEccCCCEEEEEc-CCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc
Q 043942            5 DWASEILGHK--DSFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH   81 (216)
Q Consensus         5 ~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~   81 (216)
                      +.+..+.++.  -...+++++++|+..++.. ..+.+..++....                         ........+ 
T Consensus         2 ~~~~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~-------------------------~~~~~~~~~-   55 (260)
T d1rwia_           2 QTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-------------------------GTTVLPFNG-   55 (260)
T ss_dssp             EEECCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC-----------------------------CEEECCCCS-
T ss_pred             CeEEecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc-------------------------eEEEeccCC-
Confidence            4444555543  3458999999998666544 3344444332211                         111111221 


Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG  161 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  161 (216)
                      ......++++++++++++....+.+++++-.+........                .......++++++++++++-..+.
T Consensus        56 ~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~----------------~~~~p~~iavd~~g~i~v~d~~~~  119 (260)
T d1rwia_          56 LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD----------------GLNYPEGLAVDTQGAVYVADRGNN  119 (260)
T ss_dssp             CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC----------------SCCSEEEEEECTTCCEEEEEGGGT
T ss_pred             ccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee----------------eeeecccccccccceeEeeccccc
Confidence            2345788999999988887777777777655444332221                234567888999888777655544


Q ss_pred             eE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          162 KV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       162 ~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      .+              .........++++|+++++++...++.|..++.....
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_         120 RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             EEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             cccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            44              1112355788999999988887778889999876543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.70  E-value=4.4e-06  Score=59.67  Aligned_cols=173  Identities=10%  Similarity=0.093  Sum_probs=98.1

Q ss_pred             eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-------cc---cCcEEEEEECC----------------
Q 043942           17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-------GI---EDSTVWMWNAD----------------   70 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-------~~---~~~~v~i~d~~----------------   70 (216)
                      ...++|.++++.+++++....+...+...............       .+   .+|.+++=|..                
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            45799999998888887777788888765432211111000       00   33444433321                


Q ss_pred             --------CcceeeeeeccCCCeeEEEEcCCCc-----EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe-
Q 043942           71 --------RGAYLNMFSGHGSGLTCGDFTTDGK-----TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT-  136 (216)
Q Consensus        71 --------~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-  136 (216)
                              .++... +...-...+.++|+|+++     ++++-+..+.|..||+.....+.....         ..... 
T Consensus       153 G~v~~~~~dg~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~---------~~~~~~  222 (314)
T d1pjxa_         153 GSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV---------WGHIPG  222 (314)
T ss_dssp             EEEEEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE---------EEECCC
T ss_pred             ceEEEEeecCceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeE---------EEEccc
Confidence                    122211 111223346788988764     445556788898888764332221110         00000 


Q ss_pred             eeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEcccc
Q 043942          137 SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEF  199 (216)
Q Consensus       137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~  199 (216)
                      ......-.+++.++|++.++....+.|              ......+++++|.|+++ ++++.+.++.|...++...
T Consensus       223 ~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            011234568888888877766555655              22235788999999987 4566677888877776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.69  E-value=1.5e-05  Score=56.91  Aligned_cols=174  Identities=11%  Similarity=0.107  Sum_probs=107.0

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------cCcEEEEEECC--------------Ccc
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------EDSTVWMWNAD--------------RGA   73 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------~~~~v~i~d~~--------------~~~   73 (216)
                      ...+..++|.++|++.++-...+.|..|+..+++....+.......      .||.+.+.+..              +..
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            3445789999999988887788999999988876555443322211      56666665432              111


Q ss_pred             eeeeeec--cCCCeeEEEEcCCCcEEEEecC------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942           74 YLNMFSG--HGSGLTCGDFTTDGKTICTGSD------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL  145 (216)
Q Consensus        74 ~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  145 (216)
                      .......  -......+++.++|++.++...      .+.+..++... +.+..+..               .-...+.+
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~---------------~~~~pnGi  182 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQ---------------NISVANGI  182 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEE---------------EESSEEEE
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEee---------------ccceeeee
Confidence            1111111  1234678899999987776432      23355555442 22222221               33456789


Q ss_pred             EeCCCCcEEEEe-cccCeEE------------------ee----eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942          146 SWPGTSKYLVTG-CVDGKVD------------------GH----IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA  202 (216)
Q Consensus       146 ~~~~~~~~l~~~-~~~~~i~------------------~~----~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~  202 (216)
                      +|+|+++.|+.+ +..+.|.                  ..    ......++++++|++.++....+.|.+++. +++.+
T Consensus       183 a~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l  261 (319)
T d2dg1a1         183 ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPI  261 (319)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEE
T ss_pred             eeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEE
Confidence            999999866544 4455550                  00    112467899999998888888999999995 56655


Q ss_pred             ee
Q 043942          203 TK  204 (216)
Q Consensus       203 ~~  204 (216)
                      ..
T Consensus       262 ~~  263 (319)
T d2dg1a1         262 GQ  263 (319)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.68  E-value=7e-06  Score=59.88  Aligned_cols=105  Identities=10%  Similarity=0.069  Sum_probs=66.0

Q ss_pred             CeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cC
Q 043942           84 GLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DG  161 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~  161 (216)
                      .+.++.|+|+|+++++++ ....|.+|+......+......          .........+.++|+|+++++++..+ ++
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~----------~~~~~g~gPr~i~f~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV----------DAPDPGDHPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE----------ECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce----------eecCCCCceEEEEECCCCceEEEeccCCC
Confidence            478999999999887775 4567888876543322211110          00003456889999999998866554 44


Q ss_pred             eE-------------E--------------------eeeCCEEEEEEecCCCeEEEEeC-C-----CcEEEEEccc
Q 043942          162 KV-------------D--------------------GHIDAIQSLSVSAIRESLVSVSV-D-----GTARVFEIAE  198 (216)
Q Consensus       162 ~i-------------~--------------------~~~~~i~~~~~~~~~~~l~s~~~-d-----~~v~vw~~~~  198 (216)
                      .+             .                    .+......+.++|+|++|+++.. +     ..|..|++..
T Consensus       216 ~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             EEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence            44             0                    11123467899999999887642 2     2366677654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.57  E-value=2.3e-06  Score=59.62  Aligned_cols=54  Identities=20%  Similarity=0.284  Sum_probs=35.8

Q ss_pred             EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC----C--CeEEEEeCCCCceeE
Q 043942           64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD----N--ATLSIWNPKGGENFH  118 (216)
Q Consensus        64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~----d--~~i~~wd~~~~~~~~  118 (216)
                      |.+.|+.+++.. .+..+.+.....+|+|||+.|+....    +  ..|.+++..+++..+
T Consensus        23 l~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2          23 LWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            445555555443 45556677889999999999986532    2  247788887776544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.52  E-value=5.1e-05  Score=54.00  Aligned_cols=174  Identities=11%  Similarity=0.056  Sum_probs=97.5

Q ss_pred             cccceEEEEEccCCCEEEEEcC-------CCcEEEEECCCCceEEEEeCCCC-------cc-------------cCcEEE
Q 043942           13 HKDSFSSLAFSTDGQLLASGGF-------HGLVQNRDTSSRNLQCTVEGPRG-------GI-------------EDSTVW   65 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~-------d~~v~vwd~~~~~~~~~~~~~~~-------~~-------------~~~~v~   65 (216)
                      .-.....++|.++|+++++...       ++.|..||..+++..........       ++             ..+.+.
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            3345678899999998776543       46788999888765443221111       01             123344


Q ss_pred             EEECCCcceeeeeeccC----CCeeEEEEcCCCcEEEEecC---------------CCeEEEEeCCCCceeEEeeccccc
Q 043942           66 MWNADRGAYLNMFSGHG----SGLTCGDFTTDGKTICTGSD---------------NATLSIWNPKGGENFHAIRRSSLE  126 (216)
Q Consensus        66 i~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~t~~~---------------d~~i~~wd~~~~~~~~~~~~~~~~  126 (216)
                      .+|...+..........    ...+.+++.++|++.++-..               ++.|..++.. ++......     
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-----  169 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-----  169 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-----
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-----
Confidence            55544332211111111    13578999999988877432               2345444433 33222221     


Q ss_pred             ccccceEEEeeeecCeEEEEeCCCCc----EE-EEecccCeE-----------E----------eeeCCEEEEEEecCCC
Q 043942          127 FSLNYWMICTSLYDGVTCLSWPGTSK----YL-VTGCVDGKV-----------D----------GHIDAIQSLSVSAIRE  180 (216)
Q Consensus       127 ~~~~~~~~~~~~~~~v~~~~~~~~~~----~l-~~~~~~~~i-----------~----------~~~~~i~~~~~~~~~~  180 (216)
                                 .....+.++|+|++.    .| ++-+..+.+           .          ........++++++|+
T Consensus       170 -----------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn  238 (314)
T d1pjxa_         170 -----------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             -----------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             -----------CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence                       233446677766553    33 333444444           0          0112346789999999


Q ss_pred             eEEEEeCCCcEEEEEccccccee
Q 043942          181 SLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       181 ~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      +.++....+.|.+|+...++...
T Consensus       239 lyVa~~~~g~I~~~dp~~g~~~~  261 (314)
T d1pjxa_         239 LLVANWGSSHIEVFGPDGGQPKM  261 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBSCSE
T ss_pred             EEEEEcCCCEEEEEeCCCCEEEE
Confidence            88887778999999987666543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.49  E-value=3.4e-06  Score=59.88  Aligned_cols=110  Identities=13%  Similarity=0.139  Sum_probs=80.3

Q ss_pred             ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942           73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK  152 (216)
Q Consensus        73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  152 (216)
                      +.+..+.. ...+..++++|||+++++...+++|..||.. ++... +..               ....+..++|+++|+
T Consensus        19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~-~~~---------------~~~~~~gla~~~dG~   80 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQI-HAT---------------VEGKVSGLAFTSNGD   80 (302)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EEE---------------CSSEEEEEEECTTSC
T ss_pred             cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEE-EEc---------------CCCCcceEEEcCCCC
Confidence            33444432 2357899999999999999999999999866 43322 222               456788999999999


Q ss_pred             EEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942          153 YLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR  200 (216)
Q Consensus       153 ~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~  200 (216)
                      ++++...++.+                 .........+++.++++++++.+.++.+..++...+.
T Consensus        81 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~  145 (302)
T d2p4oa1          81 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS  145 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCc
Confidence            88887666544                 1123457889999999999988888888888776543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.48  E-value=3.8e-05  Score=56.26  Aligned_cols=154  Identities=8%  Similarity=-0.003  Sum_probs=104.6

Q ss_pred             EEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------------------------------------
Q 043942           29 LASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------------------------------------   59 (216)
Q Consensus        29 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------------------------------------   59 (216)
                      |.||+..|.|+|+-+.+++.++.+..-....                                                 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            6788999999999999999888875422211                                                 


Q ss_pred             ------------cCcEEEEEECCCcceeeeeecc-CCCeeEEEEcC--CCcEEEEecCCC------------------eE
Q 043942           60 ------------EDSTVWMWNADRGAYLNMFSGH-GSGLTCGDFTT--DGKTICTGSDNA------------------TL  106 (216)
Q Consensus        60 ------------~~~~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~t~~~d~------------------~i  106 (216)
                                  .++.|.+.|+.+.+..+.+.-. ...+..++..+  +..+++.++.+.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence                        6777778888777765544322 23456666644  555777665532                  36


Q ss_pred             EEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe--E---------------------
Q 043942          107 SIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK--V---------------------  163 (216)
Q Consensus       107 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--i---------------------  163 (216)
                      .++|..+.+...++..                ......+.++++|+++++.+.+..  +                     
T Consensus       176 t~ID~~tm~V~~QV~V----------------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~ri  239 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLV----------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI  239 (459)
T ss_dssp             EEEETTTTEEEEEEEE----------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred             EEEecCCceEEEEeee----------------CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHh
Confidence            6788887776666552                334567888999998887664321  1                     


Q ss_pred             -------------------------------EeeeCCEEEEEEecCCCeEEEEeC-CCcEEEEEccc
Q 043942          164 -------------------------------DGHIDAIQSLSVSAIRESLVSVSV-DGTARVFEIAE  198 (216)
Q Consensus       164 -------------------------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~  198 (216)
                                                     ..-......+..+|||+++++++. +.++.|+|++.
T Consensus       240 e~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         240 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             HHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             HHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                                           111234567899999999887664 89999999975

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.9e-06  Score=63.99  Aligned_cols=119  Identities=9%  Similarity=0.014  Sum_probs=75.5

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeee--eeccCCCeeEEEEcCC
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNM--FSGHGSGLTCGDFTTD   93 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~   93 (216)
                      .+....||||+++++....-.  ++|...               ..+...++|+.++.....  .......+....|+||
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~--~~~r~s---------------~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD  124 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVE--PIYQHS---------------YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK  124 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCC--CCSSSC---------------CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS
T ss_pred             ccceeEECCCCCeEEEEEccc--ceeEee---------------ccccEEEEEccCCceeeccCccCCccccceeeeccC
Confidence            567788999999887765322  234322               456788888887764332  2223445667899999


Q ss_pred             CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee---------cCeEEEEeCCCCcEEEEec
Q 043942           94 GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY---------DGVTCLSWPGTSKYLVTGC  158 (216)
Q Consensus        94 ~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~  158 (216)
                      |+.+|... ++.|.+.+...+...+.........      +..+..         ..-..+-|||||++|+...
T Consensus       125 G~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~------i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         125 GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGV------IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTT------EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CceEEEEe-cceEEEEecCCCceEEEecccCcce------eeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            99998765 6679999988776665544321110      000111         1125678999999998764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=3.9e-05  Score=52.85  Aligned_cols=135  Identities=19%  Similarity=0.155  Sum_probs=76.6

Q ss_pred             eEEeeccccceEEEEEccCCCEEEEEcC-CCcEE--EEECCCCceEEEEeCCCCcc------------------cCcEEE
Q 043942            7 ASEILGHKDSFSSLAFSTDGQLLASGGF-HGLVQ--NRDTSSRNLQCTVEGPRGGI------------------EDSTVW   65 (216)
Q Consensus         7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~v~--vwd~~~~~~~~~~~~~~~~~------------------~~~~v~   65 (216)
                      ...+..+.+......|+|+|+.++.... ++...  .+..................                  ....+.
T Consensus        75 ~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~  154 (269)
T d2hqsa1          75 VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY  154 (269)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             eeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEe
Confidence            4455567788889999999998886553 22222  22222222211111111100                  233556


Q ss_pred             EEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC---eEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942           66 MWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA---TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        66 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      ..++..+... .+...........|+|+++.++..+.++   .+.+.|...+.. ....                .....
T Consensus       155 ~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~----------------~~~~~  216 (269)
T d2hqsa1         155 KVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS----------------STFLD  216 (269)
T ss_dssp             EEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC----------------CSSSC
T ss_pred             eeecccccce-eeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEee----------------cCccc
Confidence            6666655433 2333556677889999999888766443   355555554432 2222                34556


Q ss_pred             EEEEeCCCCcEEEEecc
Q 043942          143 TCLSWPGTSKYLVTGCV  159 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~  159 (216)
                      ....|+|||+.|+..+.
T Consensus       217 ~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         217 ETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             EEEEECTTSSEEEEEEE
T ss_pred             cceEECCCCCEEEEEEc
Confidence            77889999998875543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.45  E-value=8.3e-05  Score=52.97  Aligned_cols=170  Identities=14%  Similarity=0.091  Sum_probs=91.9

Q ss_pred             EeeccccceEEEEEccCCCEEEEEcCC----CcEEEEECCCCceEEEEeCCCCcc--------cCcEEEEEECCC-----
Q 043942            9 EILGHKDSFSSLAFSTDGQLLASGGFH----GLVQNRDTSSRNLQCTVEGPRGGI--------EDSTVWMWNADR-----   71 (216)
Q Consensus         9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~~~--------~~~~v~i~d~~~-----   71 (216)
                      .+.........++++++|+++++...+    +.+...+.................        .+|.+++=|...     
T Consensus        76 ~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~  155 (319)
T d2dg1a1          76 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  155 (319)
T ss_dssp             EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             EEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccC
Confidence            333445567899999999987775432    334555555544443333211111        344444333221     


Q ss_pred             ----------cceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeee
Q 043942           72 ----------GAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        72 ----------~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                                +..+..+...-...+.++|+|+++.| ++-+..+.|..||+... ...........        ......
T Consensus       156 ~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~--------~~~~~~  227 (319)
T d2dg1a1         156 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP--------YYFTGH  227 (319)
T ss_dssp             CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE--------EECCSS
T ss_pred             cceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceee--------eccCCc
Confidence                      11222222222345789999999866 55567889999998643 22211111000        000011


Q ss_pred             cCeEEEEeCCCCcEEEEecccCeE-------------------EeeeCCEEEEEEecCCCeEEEEe
Q 043942          140 DGVTCLSWPGTSKYLVTGCVDGKV-------------------DGHIDAIQSLSVSAIRESLVSVS  186 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~~~~i-------------------~~~~~~i~~~~~~~~~~~l~s~~  186 (216)
                      ...-.++++++|++.++....+.|                   ..+...+++++|.+++..+++.+
T Consensus       228 ~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         228 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             cceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            224568888888877776666666                   12233567889988877666544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=5.4e-06  Score=62.50  Aligned_cols=101  Identities=9%  Similarity=0.006  Sum_probs=63.7

Q ss_pred             CeeEEEEcCCCcEEEEec---------CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942           84 GLTCGDFTTDGKTICTGS---------DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL  154 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~---------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  154 (216)
                      .+....|+||+++++...         ..+.+.++|+.++..........             ....+....|+|||+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~-------------~~~~l~~~~wSPDG~~i  128 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-------------SNAKLQYAGWGPKGQQL  128 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-------------CSCCCSBCCBCSSTTCE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC-------------CccccceeeeccCCceE
Confidence            567788999999887763         35678999999887544322210             23344567889999887


Q ss_pred             EEecccCeE----------------------Eeee---------CCEEEEEEecCCCeEEEEeC-CCcEEEEEcc
Q 043942          155 VTGCVDGKV----------------------DGHI---------DAIQSLSVSAIRESLVSVSV-DGTARVFEIA  197 (216)
Q Consensus       155 ~~~~~~~~i----------------------~~~~---------~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~  197 (216)
                      |-...+...                      .+..         ..-..+-|||||++||.... +..|..+.+.
T Consensus       129 afv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         129 IFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             EEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             EEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecc
Confidence            654432211                      0110         11256779999999998764 4556666553

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.92  E-value=0.0013  Score=46.04  Aligned_cols=169  Identities=9%  Similarity=0.019  Sum_probs=103.3

Q ss_pred             EEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCc--c-----------cCcEEEEEECCCcceeeeeec---
Q 043942           18 SSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG--I-----------EDSTVWMWNADRGAYLNMFSG---   80 (216)
Q Consensus        18 ~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--~-----------~~~~v~i~d~~~~~~~~~~~~---   80 (216)
                      .+..|++.. ++..+=-..+.|..||..+++.. .+..+...  +           ....+..+|..+++.......   
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~   99 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESD   99 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecC
Confidence            356788744 44444446678888998887543 23222211  1           345588889888765433221   


Q ss_pred             -cCCCeeEEEEcCCCcEEEEecC----CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           81 -HGSGLTCGDFTTDGKTICTGSD----NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        81 -~~~~v~~~~~~~~~~~l~t~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                       ....++.+.+.|+|++.++...    .+.-.+|.+..++......                .....+.++|+++++.++
T Consensus       100 ~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~----------------~~~~~Ng~~~s~d~~~l~  163 (295)
T d2ghsa1         100 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA----------------DISIPNSICFSPDGTTGY  163 (295)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE----------------EESSEEEEEECTTSCEEE
T ss_pred             CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee----------------ccCCcceeeecCCCceEE
Confidence             1235788999999987776532    2334556555555433332                334567888999887655


Q ss_pred             Ee-cccCeEE----------------------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942          156 TG-CVDGKVD----------------------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK  204 (216)
Q Consensus       156 ~~-~~~~~i~----------------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~  204 (216)
                      .+ +..+.+.                      ........++++.+|++.++.-..+.|..||. +++....
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~  234 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIAR  234 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEE
T ss_pred             EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeE
Confidence            44 4444440                      11234678899999998777767788999995 4555543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=0.0021  Score=44.62  Aligned_cols=189  Identities=10%  Similarity=0.120  Sum_probs=111.8

Q ss_pred             EEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEEEECCC-cceeeeeeccC---
Q 043942           20 LAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWMWNADR-GAYLNMFSGHG---   82 (216)
Q Consensus        20 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i~d~~~-~~~~~~~~~~~---   82 (216)
                      .--+|..+.||--+ ..++.++|+++.+.++....++.-+             .+..|+-|+++. ..+.+.+..|.   
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~  146 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA  146 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhccccc
Confidence            44567777777665 5689999999999999998888755             888899999953 35666666554   


Q ss_pred             -CCeeEEEEcCCCcEEEEec-------CCCeEEEEeCCCCceeEEeecccccccccceEEEee--eecCeEEEEeC-CC-
Q 043942           83 -SGLTCGDFTTDGKTICTGS-------DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS--LYDGVTCLSWP-GT-  150 (216)
Q Consensus        83 -~~v~~~~~~~~~~~l~t~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~-~~-  150 (216)
                       ..|-.-..+++.++++..+       -.|.+.+|..+.+. .+.+++....+..-   ...+  +...+.+.+.. +. 
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~---~~~g~~~~~~lf~fa~r~~~~  222 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQF---KMEGNAEESTLFCFAVRGQAG  222 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEE---CCTTCSSCEEEEEEEEEETTE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEE---EcCCCCCCceEEEEEECCCCC
Confidence             3666777788899877543       23678888887443 33344311100000   0000  11112222211 11 


Q ss_pred             CcEEE--Eec-ccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942          151 SKYLV--TGC-VDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF  213 (216)
Q Consensus       151 ~~~l~--~~~-~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~  213 (216)
                      +++-+  .+. ..+.-             ..-..-..++..++.-..+..-+.-|.+++||++++.++..-...+-.+|
T Consensus       223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF  301 (327)
T d1utca2         223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  301 (327)
T ss_dssp             EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE
Confidence            11100  010 01100             11123456777787777888888899999999999998875444333333

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.61  E-value=0.0006  Score=46.81  Aligned_cols=81  Identities=11%  Similarity=0.058  Sum_probs=54.7

Q ss_pred             EEcCC--CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cC----
Q 043942           89 DFTTD--GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DG----  161 (216)
Q Consensus        89 ~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~----  161 (216)
                      ..+|+  |+.++..+ ++.|.+.|+.+++..+ +..               ........+|||||+.|+.... ++    
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~---------------~~~~~~~p~~SPDG~~iaf~~~~~~~~~~   67 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVS---------------NLGVINNARFFPDGRKIAIRVMRGSSLNT   67 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EEC---------------SSSEEEEEEECTTSSEEEEEEEESTTCCE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-Eec---------------CCCcccCEEECCCCCEEEEEEeeCCCCCc
Confidence            35788  88887664 4569999999877654 433               5566788999999998885432 21    


Q ss_pred             -eE--------------------EeeeCCEEEEEEecCCCeEEEEe
Q 043942          162 -KV--------------------DGHIDAIQSLSVSAIRESLVSVS  186 (216)
Q Consensus       162 -~i--------------------~~~~~~i~~~~~~~~~~~l~s~~  186 (216)
                       .+                    ...........|+|+|+.|+...
T Consensus        68 ~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          68 ADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence             12                    01112346778999999888653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.49  E-value=0.0089  Score=43.67  Aligned_cols=177  Identities=13%  Similarity=0.080  Sum_probs=103.7

Q ss_pred             EEEEcc---CCCEEEEEc-CCCcEEEEECCCCceEEEEeCCCCcc-----------------------------------
Q 043942           19 SLAFST---DGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------------------   59 (216)
Q Consensus        19 ~~~~s~---~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------------------   59 (216)
                      .+++..   ||++|+... .+..|-+-|+.+.+..+.++.+....                                   
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            456654   788877665 67889999999998877665443221                                   


Q ss_pred             --cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC---------------eEEEEeCCC-------Cc
Q 043942           60 --EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA---------------TLSIWNPKG-------GE  115 (216)
Q Consensus        60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~---------------~i~~wd~~~-------~~  115 (216)
                        ..+.+.++|..+.+....+. -.+....++++++|+++++.+.+.               .+.+++...       |+
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence              12445677888777666555 234567899999999998876431               133333210       00


Q ss_pred             -----eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cCeE-------------------------E
Q 043942          116 -----NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV-------------------------D  164 (216)
Q Consensus       116 -----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i-------------------------~  164 (216)
                           .+..+......  ..............-.+..+|||+++++++. +..+                         .
T Consensus       248 ~~eingV~VVD~~~~~--~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEA--SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             SEEETTEEEEECSGG----CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             cEEeCCceeecccccC--CcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                 00111110000  0000000112233456789999999887765 4444                         1


Q ss_pred             eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942          165 GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE  198 (216)
Q Consensus       165 ~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~  198 (216)
                      ...-....-+|+..|+-..|---|..|.-|++..
T Consensus       326 elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            2233456778888886555556799999999864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.48  E-value=0.007  Score=42.18  Aligned_cols=157  Identities=15%  Similarity=0.085  Sum_probs=89.1

Q ss_pred             ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------cCcEEE--------------EEEC
Q 043942           14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------EDSTVW--------------MWNA   69 (216)
Q Consensus        14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------~~~~v~--------------i~d~   69 (216)
                      ...+.++++.++|.+++++ .+ .+..+|..+++............          .+|.+.              +|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            4568899999998777654 34 58899999887654433221111          233332              3333


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCce-----eEEe-ecccccccccceEEEeeeecCe
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGEN-----FHAI-RRSSLEFSLNYWMICTSLYDGV  142 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~v  142 (216)
                      ..++...... .-...+.++|+++++.+ ++-+..+.|..+++.....     ...+ ...             +.....
T Consensus       136 ~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~-------------~~~g~p  201 (295)
T d2ghsa1         136 AKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-------------GIKGGM  201 (295)
T ss_dssp             ETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-------------TSSSEE
T ss_pred             cCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccC-------------cccccc
Confidence            3343333332 22345789999998865 4556778899888753211     1111 100             023345


Q ss_pred             EEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEe-cCCCeE-EEEe
Q 043942          143 TCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVS-AIRESL-VSVS  186 (216)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~-~~~~~l-~s~~  186 (216)
                      ..++++++|++.++.-..+.|             ..-...+++++|- |+.+.| +|.+
T Consensus       202 dG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         202 DGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             cceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            667778888766554444444             1112468999996 665544 4444

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.25  E-value=0.0086  Score=45.76  Aligned_cols=61  Identities=11%  Similarity=0.266  Sum_probs=44.1

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      .+.+.-+|+.+++.+-+... ......-...-.+.+++.|+.|+.++.+|.++|+.+-++..
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            35778888888887766542 22222222333567888899999999999999999988875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.11  E-value=0.02  Score=43.79  Aligned_cols=60  Identities=12%  Similarity=0.109  Sum_probs=40.8

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +.+.-+|+++++.+-+.... ....+-.....+.++++|+.|+.++.+|.++|+.+-++..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence            46777777777776554421 1111111222466788899999999999999999988875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.10  E-value=0.0074  Score=46.25  Aligned_cols=60  Identities=17%  Similarity=0.275  Sum_probs=43.1

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +.+.-||+.+++.+-+.+.. .+...-...-.+.++++|+.|+.++.+|.++|+.+-++..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            46777888888777666532 2222112233577888899999999999999999988875

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.018  Score=39.29  Aligned_cols=126  Identities=13%  Similarity=0.027  Sum_probs=70.5

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY  139 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (216)
                      .+.|+..++..+.....+......+.++++..-++.| .+-...+.|.+.++........+..               ..
T Consensus        57 ~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~---------------~l  121 (263)
T d1npea_          57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT---------------GL  121 (263)
T ss_dssp             TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------------SC
T ss_pred             CCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecc---------------cc
Confidence            3444445554433333333233457888888655554 4555678899999875443332222               22


Q ss_pred             cCeEEEEeCCCCcEEEEecc---cCeE--------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcccccc
Q 043942          140 DGVTCLSWPGTSKYLVTGCV---DGKV--------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEFRR  201 (216)
Q Consensus       140 ~~v~~~~~~~~~~~l~~~~~---~~~i--------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~~~  201 (216)
                      ..+..++++|...+++-...   ...|              ...-.....+++++.++.|..+ ...+.|...++.....
T Consensus       122 ~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~  201 (263)
T d1npea_         122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR  201 (263)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe
Confidence            45667777765554442211   1123              1112356789998877766554 4567888888865443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.08  E-value=0.021  Score=40.61  Aligned_cols=160  Identities=12%  Similarity=0.097  Sum_probs=80.3

Q ss_pred             ceEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCccee-eeee--cc-----CCCee
Q 043942           16 SFSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYL-NMFS--GH-----GSGLT   86 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~-~~~~--~~-----~~~v~   86 (216)
                      ..-+++..|+|..+++++. .+.+.-|+..               ..|.+.++|+.+.... ..+.  +.     .-...
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~---------------~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph  100 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPD---------------KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH  100 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------C---------------CCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCC---------------CCCeEEEEecCCCCCcceEEEecCCCCCCcceecc
Confidence            3457888899877766652 2222223221               3577777777654321 1111  11     11223


Q ss_pred             EEEE--cCCCc-EEEEe---cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec--
Q 043942           87 CGDF--TTDGK-TICTG---SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC--  158 (216)
Q Consensus        87 ~~~~--~~~~~-~l~t~---~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--  158 (216)
                      .++.  .++++ +|++.   ....+|.+|++............          .........+.+.+..++++++|-.  
T Consensus       101 Gi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~----------v~~~~~~~pNDv~~~~~g~fy~Tnd~~  170 (340)
T d1v04a_         101 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKT----------IRHKLLPSVNDIVAVGPEHFYATNDHY  170 (340)
T ss_dssp             EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEE----------ECCTTCSSEEEEEEEETTEEEEEESCS
T ss_pred             ceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEee----------cCCccccCccceEEecCCCEEEecCcc
Confidence            4443  34454 23332   24556777776543221111100          0000223456777777777776621  


Q ss_pred             ccC---------------eE-----------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEccccc
Q 043942          159 VDG---------------KV-----------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEFR  200 (216)
Q Consensus       159 ~~~---------------~i-----------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~~  200 (216)
                      ...               .+           ...-.....++++||+++|+.+ +..+.|++|++...+
T Consensus       171 ~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         171 FIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             CCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            110               11           2233567899999999877654 557899999987544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.87  E-value=0.024  Score=43.47  Aligned_cols=60  Identities=17%  Similarity=0.306  Sum_probs=43.6

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +.+.-+|+.+++.+-+.+.+ .++..-..+..+.++++|+.|+.++.+|.++|+.+-+++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            56777888888777666533 2222222334577888899999999999999999988875

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.80  E-value=0.052  Score=39.74  Aligned_cols=17  Identities=41%  Similarity=0.724  Sum_probs=12.2

Q ss_pred             ceEEEEEccCCCEEEEE
Q 043942           16 SFSSLAFSTDGQLLASG   32 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~   32 (216)
                      .+...++||+++++|.+
T Consensus       126 ~~~~~~~Spd~~~la~s  142 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYG  142 (430)
T ss_dssp             EEEEEEECTTSSEEEEE
T ss_pred             eecceEecCCCCEEEEE
Confidence            34567789999887743

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.58  E-value=0.066  Score=38.08  Aligned_cols=159  Identities=9%  Similarity=0.075  Sum_probs=91.3

Q ss_pred             cCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-cc---------------------c--CcEEEEEECCC-cceeeee
Q 043942           24 TDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-GI---------------------E--DSTVWMWNADR-GAYLNMF   78 (216)
Q Consensus        24 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~---------------------~--~~~v~i~d~~~-~~~~~~~   78 (216)
                      |+..+++...+.+-+++||+. |+.+..+..... .+                     .  ..+|.+|.+.. ...+..+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            455778877888789999985 666655432110 00                     1  24677777642 2223323


Q ss_pred             ecc-------CCCeeEEEE--cCC-Cc-EEEEecCCCeEEEEeCC---CCc----eeEEeecccccccccceEEEeeeec
Q 043942           79 SGH-------GSGLTCGDF--TTD-GK-TICTGSDNATLSIWNPK---GGE----NFHAIRRSSLEFSLNYWMICTSLYD  140 (216)
Q Consensus        79 ~~~-------~~~v~~~~~--~~~-~~-~l~t~~~d~~i~~wd~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  140 (216)
                      ...       ...+..+++  ++. +. ++++...+|.+..|.+.   .+.    .+..+.                ...
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~----------------~~~  180 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK----------------MNS  180 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE----------------CSS
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC----------------CCC
Confidence            211       124666666  554 44 45667788999888763   222    223333                345


Q ss_pred             CeEEEEeCCCCcEEEEecccCeE---------------------EeeeCCEEEEEEec--CCC-eEEEEe-CCCcEEEEE
Q 043942          141 GVTCLSWPGTSKYLVTGCVDGKV---------------------DGHIDAIQSLSVSA--IRE-SLVSVS-VDGTARVFE  195 (216)
Q Consensus       141 ~v~~~~~~~~~~~l~~~~~~~~i---------------------~~~~~~i~~~~~~~--~~~-~l~s~~-~d~~v~vw~  195 (216)
                      .+..+.+++....|+.+-++..+                     ......+..++.=.  +++ ||++++ .+++..+||
T Consensus       181 q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             ccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            66777777776777766555444                     11234566666532  333 665555 478999999


Q ss_pred             cccc
Q 043942          196 IAEF  199 (216)
Q Consensus       196 ~~~~  199 (216)
                      ....
T Consensus       261 r~~~  264 (353)
T d1h6la_         261 RQGQ  264 (353)
T ss_dssp             SSTT
T ss_pred             cCCC
Confidence            8753

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.56  E-value=0.083  Score=38.97  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=27.7

Q ss_pred             cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce
Q 043942           13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL   48 (216)
Q Consensus        13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~   48 (216)
                      .-...++|+|.|+|++|++--..|.|++++..+++.
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~   60 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence            345678999999999988876578888887665543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.31  E-value=0.088  Score=38.83  Aligned_cols=62  Identities=10%  Similarity=0.045  Sum_probs=40.6

Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT  150 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (216)
                      -...++|+|.|+++++++--.+|.|++++..+++...............       .+.....++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~-------ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDAD-------GQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTT-------SSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccC-------CCCceeeEEeCCC
Confidence            3567899999999988876567999999988776543332211111111       3456778888874

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.17  E-value=0.17  Score=38.47  Aligned_cols=61  Identities=20%  Similarity=0.200  Sum_probs=40.9

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCe---------eEEEEcCCCc---EEEEecCCCeEEEEeCCCCceeEEee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGL---------TCGDFTTDGK---TICTGSDNATLSIWNPKGGENFHAIR  121 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~t~~~d~~i~~wd~~~~~~~~~~~  121 (216)
                      ...+.-.|.++++.+..++.....+         .......+++   .++.++.+|.+.++|..+|+.+...+
T Consensus       271 s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~  343 (571)
T d2ad6a1         271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeec
Confidence            4567788999998887766432221         1222222443   56788899999999999999875543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.17  E-value=0.14  Score=39.16  Aligned_cols=60  Identities=17%  Similarity=0.196  Sum_probs=42.0

Q ss_pred             cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      +.+.-||+.+++.+-... +.....+-..+..+.+++.|+.|+.++.+|.++|+.+-++..
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence            567777777777665543 222222222233567888899999999999999999988875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.07  E-value=0.19  Score=38.17  Aligned_cols=26  Identities=12%  Similarity=0.088  Sum_probs=22.5

Q ss_pred             CCCeEEEEeCCCcEEEEEccccccee
Q 043942          178 IRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       178 ~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      .+.++++++.||.++.+|.++++.+=
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW  512 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLW  512 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeE
Confidence            56788888999999999999999773

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.94  E-value=0.16  Score=36.04  Aligned_cols=83  Identities=11%  Similarity=0.177  Sum_probs=49.4

Q ss_pred             EEEEEECCCcceee--ee-eccCCCeeEEEEcCCCcEEEEecCC-CeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942           63 TVWMWNADRGAYLN--MF-SGHGSGLTCGDFTTDGKTICTGSDN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL  138 (216)
Q Consensus        63 ~v~i~d~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~l~t~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                      .+.+||+.+++-..  .. ..+.......++.+++++++.|+.+ ..+.+||..+......-...              .
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~--------------~  118 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ--------------V  118 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS--------------S
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccc--------------c
Confidence            35678887654322  11 2233334567788999999988754 67999999876653311110              1


Q ss_pred             ecCeEEEEeCCCCcEEEEecc
Q 043942          139 YDGVTCLSWPGTSKYLVTGCV  159 (216)
Q Consensus       139 ~~~v~~~~~~~~~~~l~~~~~  159 (216)
                      ...--..+..+||++++.++.
T Consensus       119 ~r~~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3         119 ARGYQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             CCSSCEEEECTTSCEEEECCC
T ss_pred             cccccceeeecCCceeeeccc
Confidence            111224455678888887765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.63  E-value=0.3  Score=36.97  Aligned_cols=62  Identities=15%  Similarity=0.176  Sum_probs=39.8

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCee---------EEEEcCCC---cEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLT---------CGDFTTDG---KTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~---------~~~~~~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      ...|.-.|+++++....++.....+.         -+....++   ..++.+..+|.+.++|..+++.+...+.
T Consensus       269 s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~  342 (560)
T d1kv9a2         269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF  342 (560)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             ceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccc
Confidence            45667778888887665553222221         12222233   3567788999999999999998765543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.37  E-value=0.19  Score=32.99  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=59.9

Q ss_pred             CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------cCcEEEEEECCCcceeeee--------------eccC-CC
Q 043942           26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------EDSTVWMWNADRGAYLNMF--------------SGHG-SG   84 (216)
Q Consensus        26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------~~~~v~i~d~~~~~~~~~~--------------~~~~-~~   84 (216)
                      .++++.+...|.+.++-+..++.++.-+.+-...      -|..+.+-|+..|+..+.+              .... -.
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~vR  105 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMR  105 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSBE
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceEE
Confidence            3477777789999999888777665443333222      4666667777766544332              1111 24


Q ss_pred             eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942           85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR  122 (216)
Q Consensus        85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~  122 (216)
                      |.++++. +.+...+|+......+|-++.|+.......
T Consensus       106 I~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~v  142 (313)
T d2hu7a1         106 ILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARL  142 (313)
T ss_dssp             EEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred             EEEeeec-CceEEEecccCCceEEEEEeCCceeeeccC
Confidence            5566654 445667888777888888888876544443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.13  E-value=0.32  Score=34.32  Aligned_cols=101  Identities=11%  Similarity=0.096  Sum_probs=56.2

Q ss_pred             eEEEEEccCCCEEEEEcCC-CcEEEEECCCCceEEEEeCCCCc------------c-----------cCcEEEEEECCCc
Q 043942           17 FSSLAFSTDGQLLASGGFH-GLVQNRDTSSRNLQCTVEGPRGG------------I-----------EDSTVWMWNADRG   72 (216)
Q Consensus        17 v~~~~~s~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~~------------~-----------~~~~v~i~d~~~~   72 (216)
                      ....++.++|++++.|+.+ ..+.+||..+......-..+...            +           .-..+.+||+.+.
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            3456788999999988765 58999998766443211111110            0           2245677787765


Q ss_pred             ceeee--ee-------ccCC-----CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee
Q 043942           73 AYLNM--FS-------GHGS-----GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF  117 (216)
Q Consensus        73 ~~~~~--~~-------~~~~-----~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~  117 (216)
                      +-...  ..       .+..     .-..+..-++++.+..+..++.+.++|..+....
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence            32111  00       0000     0111222346777777777778888887766543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.40  E-value=0.59  Score=33.88  Aligned_cols=57  Identities=21%  Similarity=0.376  Sum_probs=38.1

Q ss_pred             CeeEEEEcCCCcEEEEe-----cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942           84 GLTCGDFTTDGKTICTG-----SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT  156 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  156 (216)
                      .+...+++|++++++.+     +..-.++++|+.+++.+...-                .......++|.++++.|+-
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i----------------~~~~~~~~~W~~D~~~~~Y  187 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL----------------ERVKFSCMAWTHDGKGMFY  187 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE----------------EEECSCCEEECTTSSEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc----------------ccccccceEEcCCCCEEEE
Confidence            34566789999988743     233569999999998654221                1222356789998887654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.62  Score=31.36  Aligned_cols=176  Identities=9%  Similarity=-0.054  Sum_probs=90.6

Q ss_pred             ccccceEEEEEccCCCEEEEEc-CCCcEEEEECCCCc---eEEE-EeCC---CCcc--------------cCcEEEEEEC
Q 043942           12 GHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRN---LQCT-VEGP---RGGI--------------EDSTVWMWNA   69 (216)
Q Consensus        12 ~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~---~~~~-~~~~---~~~~--------------~~~~v~i~d~   69 (216)
                      .....+..++|++..+.|.-.. ..+.|+.-++....   .... +...   ..++              ..+.|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            3445667899988777666554 45666666654321   1111 1111   1111              4456666666


Q ss_pred             CCcceeeeeeccCCCeeEEEEcCCCcEEEEe--cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942           70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTG--SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW  147 (216)
Q Consensus        70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  147 (216)
                      ........+.........++++|...++...  +..+.|.-.++...........               .-.....+++
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~---------------~~~~p~gl~i  171 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------------NIQWPNGITL  171 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---------------SCSCEEEEEE
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc---------------ccceeeEEEe
Confidence            6444433344445667889998865555433  2345677777663333222221               2234567777


Q ss_pred             CCCCcEEEEe-cccCeE--------------Eee--eCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          148 PGTSKYLVTG-CVDGKV--------------DGH--IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       148 ~~~~~~l~~~-~~~~~i--------------~~~--~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      ++.+..|+-+ ...+.|              ...  .....++++. ++....+-..++.|+..+..+++...
T Consensus       172 D~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~  243 (266)
T d1ijqa1         172 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN  243 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             eccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceE
Confidence            7655544433 334444              011  1234566665 23334444467888888877765544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.22  E-value=0.73  Score=30.96  Aligned_cols=127  Identities=6%  Similarity=-0.110  Sum_probs=66.0

Q ss_pred             CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec-C--CCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942           61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS-D--NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS  137 (216)
Q Consensus        61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (216)
                      .+.|.+.++........+......+..++++|...++.... .  ...|..-++...........               
T Consensus       100 ~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~---------------  164 (263)
T d1npea_         100 LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---------------  164 (263)
T ss_dssp             TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT---------------
T ss_pred             CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee---------------
Confidence            44566666654332222222335678999998766655432 2  23354455553322222221               


Q ss_pred             eecCeEEEEeCCCCcEEEEe-cccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942          138 LYDGVTCLSWPGTSKYLVTG-CVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT  203 (216)
Q Consensus       138 ~~~~v~~~~~~~~~~~l~~~-~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~  203 (216)
                      .-.....+++++.++.|+.+ ...+.|             ........++++. ++.+..+-...+.|...|..+++...
T Consensus       165 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccce
Confidence            22345678887666555433 344555             1111234567764 33333444456888888888776544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.68  E-value=1.4  Score=30.45  Aligned_cols=117  Identities=8%  Similarity=0.040  Sum_probs=75.2

Q ss_pred             ceeEEeeccc----cceEEEEEccCCCEEEEEc-------CCCcEEEEECCCCceEEEEeCCCCcc--------------
Q 043942            5 DWASEILGHK----DSFSSLAFSTDGQLLASGG-------FHGLVQNRDTSSRNLQCTVEGPRGGI--------------   59 (216)
Q Consensus         5 ~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~-------~d~~v~vwd~~~~~~~~~~~~~~~~~--------------   59 (216)
                      ++++.+.-|.    ..|..-..+++.++++..+       -.|.+.+|..+.+ ..+.+++|...-              
T Consensus       134 ~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~l  212 (327)
T d1utca2         134 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTL  212 (327)
T ss_dssp             CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEE
T ss_pred             CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceE
Confidence            4555555444    3577778888999877654       2367888887754 333444433321              


Q ss_pred             --------cCcEEEEEECCCcc----ee----eeee----ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEE
Q 043942           60 --------EDSTVWMWNADRGA----YL----NMFS----GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA  119 (216)
Q Consensus        60 --------~~~~v~i~d~~~~~----~~----~~~~----~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~  119 (216)
                              ..+.+++.++....    +.    ..+.    ...+-..++..++.-..+..-+.-|.+.+||+.++..+..
T Consensus       213 f~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         213 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             EEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEE
Confidence                    45778888875421    10    0111    1233455778888778888888999999999999998876


Q ss_pred             eec
Q 043942          120 IRR  122 (216)
Q Consensus       120 ~~~  122 (216)
                      -..
T Consensus       293 nRI  295 (327)
T d1utca2         293 NRI  295 (327)
T ss_dssp             EEC
T ss_pred             eec
Confidence            654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=1.5  Score=29.29  Aligned_cols=103  Identities=14%  Similarity=0.033  Sum_probs=62.4

Q ss_pred             CCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE-Ee-cc
Q 043942           83 SGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV-TG-CV  159 (216)
Q Consensus        83 ~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~~  159 (216)
                      ..+..+++.+.++.| .+-...+.|.+.++...........               .......++++|...+++ +- +.
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~---------------~~~~P~~l~vd~~~g~ly~~~~~~  141 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGT  141 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---------------TTCCEEEEEEETTTTEEEEEECSS
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcC---------------CCCCcceEEEEcccCeEEEeccCC
Confidence            456788988755544 4445678899999885554443332               234456677766443333 22 12


Q ss_pred             cCeE--------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEccccc
Q 043942          160 DGKV--------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEFR  200 (216)
Q Consensus       160 ~~~i--------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~~  200 (216)
                      .+.|              ...-....++++++.++.|..+ +..+.|...++....
T Consensus       142 ~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         142 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            2233              1222457899999887766655 456788888876543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.86  E-value=2.9  Score=29.75  Aligned_cols=93  Identities=6%  Similarity=-0.105  Sum_probs=60.9

Q ss_pred             CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942           82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG  161 (216)
Q Consensus        82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  161 (216)
                      ...+..+.++|.  .++....++.+.++++.+++........          ........+.+++|++.|..++++..+.
T Consensus       125 ~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v----------~~~~~~~~~~~v~ws~kgkq~v~~~g~~  192 (381)
T d1xipa_         125 EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNV----------TSFDVTNSQLAVLLKDRSFQSFAWRNGE  192 (381)
T ss_dssp             SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESE----------EEEEECSSEEEEEETTSCEEEEEEETTE
T ss_pred             cccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCc----------ceEEecCCceEEEEeCCcEEEEEeCCCc
Confidence            455777777775  4555667889999999988654332210          0011446789999999999988874332


Q ss_pred             e-E-------------EeeeCCEEEEEEecCCCeEEEEe
Q 043942          162 K-V-------------DGHIDAIQSLSVSAIRESLVSVS  186 (216)
Q Consensus       162 ~-i-------------~~~~~~i~~~~~~~~~~~l~s~~  186 (216)
                      . +             ......|.++.|-.+..++++-+
T Consensus       193 ~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         193 MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence            1 1             11234688999988877777553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.92  E-value=4.3  Score=30.69  Aligned_cols=53  Identities=11%  Similarity=0.088  Sum_probs=41.5

Q ss_pred             CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------------cCcEEEEEECCCcceeeeee
Q 043942           27 QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------------EDSTVWMWNADRGAYLNMFS   79 (216)
Q Consensus        27 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------------~~~~v~i~d~~~~~~~~~~~   79 (216)
                      .+++.++.|+.+.-.|..+++............                         ..|.|+-+|.++|+.+-++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            468889999999999999999988875432111                         35889999999999887654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.78  E-value=3.9  Score=29.01  Aligned_cols=83  Identities=8%  Similarity=-0.033  Sum_probs=45.5

Q ss_pred             CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942           84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV  163 (216)
Q Consensus        84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i  163 (216)
                      .|..++|+.+  .++.. .++.+..++...-........               ...++.++.++|..-  +....++.+
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~---------------~~~~~~~~~~~p~~~--~l~~~~~~~  147 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTS---------------FEKPVFQLKNVNNTL--VILNSVNDL  147 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEE---------------CSSCEEEEEECSSEE--EEEETTSEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeecccccccccc---------------ccccccceecCCcee--EEEecCCCE
Confidence            5888999754  45444 445678788776544433332               334566666665432  222222222


Q ss_pred             -------------------EeeeCCEEEEEEecCCCeEEEEe
Q 043942          164 -------------------DGHIDAIQSLSVSAIRESLVSVS  186 (216)
Q Consensus       164 -------------------~~~~~~i~~~~~~~~~~~l~s~~  186 (216)
                                         ..-.+.+.+++|++.|..++++.
T Consensus       148 ~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         148 SALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             EEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence                               11235567777777777777664

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.14  E-value=1.2  Score=33.67  Aligned_cols=51  Identities=20%  Similarity=0.162  Sum_probs=29.2

Q ss_pred             CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe
Q 043942            2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE   53 (216)
Q Consensus         2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~   53 (216)
                      .+|+.+-+...+. ++..-..+..+.++++|+.||.++.+|.++|+.+-+++
T Consensus       474 ~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         474 VSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             TTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            4555555554332 22222233456677778878777777777777654443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=83.64  E-value=4.2  Score=26.57  Aligned_cols=137  Identities=17%  Similarity=0.198  Sum_probs=73.8

Q ss_pred             ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cC--cEEEEEECCCcceeeee
Q 043942           16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------ED--STVWMWNADRGAYLNMF   78 (216)
Q Consensus        16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~--~~v~i~d~~~~~~~~~~   78 (216)
                      .|.++++. +.+...+|+....+.+|-++.++..+....+....               ..  ....+=|+..|. ++.+
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~-lri~  182 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVF  182 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEE-EEEE
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCC-EEEe
Confidence            34444443 34567788888889999998887766555444322               11  123333443332 2344


Q ss_pred             eccCCCeeEEEEcCCCcEEEEec---CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942           79 SGHGSGLTCGDFTTDGKTICTGS---DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV  155 (216)
Q Consensus        79 ~~~~~~v~~~~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  155 (216)
                      ....+.++...+.+..+. ++.-   .......+|+++++.-. +..+..++...       ..-.|.-+-+.|+++.++
T Consensus       183 tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yer-ve~P~kd~~sy-------~p~~I~~~~Y~Pdd~L~i  253 (313)
T d2hu7a1         183 DSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVED-LELPSKDFSSY-------RPTAITWLGYLPDGRLAV  253 (313)
T ss_dssp             CCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEE-CCCSSCHHHHH-------CCSEEEEEEECTTSCEEE
T ss_pred             cCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceee-eecCcccceee-------cceEEEeeeeCCCCcEEE
Confidence            445566666666665544 3322   12222355888665432 11111111000       233456667899999988


Q ss_pred             EecccCeE
Q 043942          156 TGCVDGKV  163 (216)
Q Consensus       156 ~~~~~~~i  163 (216)
                      .+-.||.-
T Consensus       254 iakrdG~s  261 (313)
T d2hu7a1         254 VARREGRS  261 (313)
T ss_dssp             EEEETTEE
T ss_pred             EEecCCch
Confidence            88777754