Citrus Sinensis ID: 043943

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-----
Protein Sequence
FSLPVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVKKLIIMILLPLLGVLALSIISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQLP
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccEEEEEcccccccEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEEEccEEEEcccccccccccccEEEccccccccccccccccccccccEEccccccEEccccccccccccccEEccccccccccccccccccccccccccccEEEEcccccccccccccEEEccccEEEEEccHHccccccccEEEccccEEEEccccccccccccccEEccccEEEcccccccccccccccEEccccEEEEEcccccccccccccEEEccccEEEEEcccccccccccccEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEcccccccccccHHHHccccccccccccccccccccHHHHHHHHcccEEEcccccccccccHHHHccccccEEccccccccccccccccccccccEEEcccccccccccccccccccccHHcccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccccEEccccccEEEEEEEccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccHHHHHHHHHHHHcccccccHccccccccccccccccccEEEEEEcccccEEEEEcccccccccccHHHHHHcccccEEEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHHcccccccEEEccccEEEEEccHHHcccccccEEEEcEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHccHHHHHHHEccccccccccccHHHHHHHcccEEEcccccccccccHHHHcccccEEEEEcccccccccccccHHccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEccccccEcHHHHHHHHccccHccEEEccccEEEEEEEcccccEEEEEEEccccc
Coil and Loop (DISEMBL)
fslpvssdsTEEARALLKWKTSlqihsrsllpswtlspvnatkknlcawsgiycnhdervvginltttslngtldefsfssfpdllflnlfnnelfgiippqISQLFKLQYLDLsanklsgkippeigqlsfLSELSLYsnclngsipqslgnlskqSLLSLYNnslsgyippviGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFnnslsgfipstlgklkCLSNLNMSMnhlsgaipssignvrNLRSLFLYsnelsgsipkeignlrslsnldlsinrlngvipssignsnnLSILYLYSnqlsgsipkeignLKCLFDLELSMNnltgvipssignlRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLgfnyfrgpipknfknLTNLVRVRMNQnnlsgniseafvgtyptlsfldlshnnfhgqissdwgrfpqlgtldfsvnnitgsippeignssKLQVLNLssnhiggkipmelgrLSSLNKLIlnknqlfgslppeigtlteLELLDLSenrlsnaipgslGNLLKVHYLNlsnnefshkiPTQFEKLQLQLSELDLSqnflegeipsqicNMESLVKLNLSYnqlsgfipncfedmhglssidisynrlqgpvpfskafrdapaealqgnrglcgddkglssckAFRSSRRASVKKLIIMILLPLLGVLALSIISIGLlfnsrrtkmvsqtgqsspanasgFLSTLTLEGKITYDQIIRATndfdeeycigkgaqgslykaklqSEDLIAVKKFNSQLP
Flexible Loop (DISEMBL)
fslpvssdsteEARALLKWktslqihsrsllpswtlspvNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTgvipssigNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQgnrglcgddkglssCKAFRSSRRASVKKLIIMILLPLLGVLALSIISIGLLFNSRRTKMVsqtgqsspanasGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQLP
Low Complexity Region (SEG)
FSLPVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTldefsfssfpdllflnlfnnelfGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGnlskqsllslynnslsGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPssignsnnlsilylysnqlsGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGnlrnlrllylyrnELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRlsslnklilnknqlFGSlppeigtltelelldlseNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKlqlqlseldlsqNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVKKliimillpllgvlalsiiSIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQLP
Disordered region (IsUnstruct)
**************ALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFR***********GLCG*******CKAFR**RRASVKKLIIMILLPLLGVLALSIISIGLLFNS******************GFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAV********
Disordered Region (DISOPRED)
FSLP**SDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDD*********************IMILLPLLGVLALSIISIGLLFNS**********************TLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL*
Disordered Region (DISEMBL)
*************RALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVKKLIIMILLPLLGVLALSIISIGLLFNSRRT************NASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQLP
Disordered Region (DISPRO)
FSLPVSSDSTEEARALLKWKTSLQIHS*SLLPSWTLS*****KKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKA****RRASVKKLIIMILLPLLGVLALSIISIGLLFNSRRT**************SGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FSLPVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVKKLIIMILLPLLGVLALSIISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	775	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.974	0.722	0.439	1e-166
Q9LP24	1120	Probable leucine-rich rep	no	no	0.971	0.672	0.404	1e-165
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.981	0.691	0.349	1e-115
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.935	0.657	0.341	1e-109
O49318	1124	Probable leucine-rich rep	no	no	0.908	0.626	0.363	1e-107
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.895	0.555	0.366	1e-106
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.898	0.555	0.365	1e-104
C0LGV1	1135	LRR receptor-like serine/	no	no	0.971	0.663	0.339	1e-103
C0LGR3	1091	Probable LRR receptor-lik	no	no	0.954	0.678	0.362	2e-99
Q9LHP4	1141	Receptor-like protein kin	no	no	0.809	0.549	0.343	3e-94

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 339/771 (43%), Positives = 483/771 (62%), Gaps = 16/771 (2%)

Query: 7   SDSTEEARALLKWKTSLQIH-SRSLLPSWTLSPVNATKKNLC-AWSGIYCNHDERVVGIN 64
           S + EEA ALLKWK++     S S L SW    VN    + C +W G+ C+    ++ +N
Sbjct: 45  SATVEEANALLKWKSTFTNQTSSSKLSSW----VNPNTSSFCTSWYGVACSLGS-IIRLN 99

Query: 65  LTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP 124
           LT T + GT ++F FSS P+L F++L  N   G I P   +  KL+Y DLS N+L G+IP
Sbjct: 100 LTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIP 159

Query: 125 PEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTL 184
           PE+G LS L  L L  N LNGSIP  +G L+K + +++Y+N L+G IP   GNL  L  L
Sbjct: 160 PELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNL 219

Query: 185 DLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP 244
            L +N L GS+P  +GNL NL  L L  N+L+G IPS+ G LK ++ LNM  N LSG IP
Sbjct: 220 YLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIP 279

Query: 245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSIL 304
             IGN+  L +L L++N+L+G IP  +GN+++L+ L L +N+LNG IP  +G   ++  L
Sbjct: 280 PEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDL 339

Query: 305 YLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIP 364
            +  N+L+G +P   G L  L  L L  N L+G IP  I N   L +L L  N  +G +P
Sbjct: 340 EISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLP 399

Query: 365 QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSF 424
             I    +L +L L  N+F GP+PK+ ++  +L+RVR   N+ SG+ISEAF G YPTL+F
Sbjct: 400 DTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAF-GVYPTLNF 458

Query: 425 LDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKI 484
           +DLS+NNFHGQ+S++W +  +L     S N+ITG+IPPEI N ++L  L+LSSN I G++
Sbjct: 459 IDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGEL 518

Query: 485 PMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHY 544
           P  +  ++ ++KL LN N+L G +P  I  LT LE LDLS NR S+ IP +L NL +++Y
Sbjct: 519 PESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYY 578

Query: 545 LNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGF 604
           +NLS N+    IP    KL  QL  LDLS N L+GEI SQ  ++++L +L+LS+N LSG 
Sbjct: 579 MNLSRNDLDQTIPEGLTKLS-QLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQ 637

Query: 605 IPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGD---DKGLSSCKA 661
           IP  F+DM  L+ +D+S+N LQGP+P + AFR+AP +A +GN+ LCG     +GL  C  
Sbjct: 638 IPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSI 697

Query: 662 FRSSRRASVKKLIIMILLPLLGVLALSIISIGLLFNSR-RTKMVSQTGQSSPANASGFLS 720
             S +    + LII IL+P++G + +  +  G+    R RTK + +   S     +  LS
Sbjct: 698 TSSKKSHKDRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDSESGGET--LS 755

Query: 721 TLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771
             + +GK+ Y +II+AT +FD +Y IG G  G +YKAKL +  ++AVKK N
Sbjct: 756 IFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLN 805

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  583 bits (1503), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 349/862 (40%), Positives = 504/862 (58%), Gaps = 109/862 (12%)

Query: 12  EARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLN 71
           EA ALLKWK++    S+  L SW       T  +  +W G+ CN    +  +NLT T + 
Sbjct: 33  EANALLKWKSTFTNSSK--LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIE 90

Query: 72  GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPP------ 125
           GT  +F F S  +L +++L  N L G IPPQ   L KL Y DLS N L+G+I P      
Sbjct: 91  GTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLK 150

Query: 126 ------------------EIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL 167
                             E+G +  +++L+L  N L GSIP SLGNL    +L LY N L
Sbjct: 151 NLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYL 210

Query: 168 SGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLK 227
           +G IPP +GN+ S++ L LS N+L GS+P  LGNL NL+ L+L+ N L+G IP  +G ++
Sbjct: 211 TGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNME 270

Query: 228 CLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRL 287
            ++NL +S N L+G+IPSS+GN++NL  L L+ N L+G IP ++GN+ S+ +L+LS N+L
Sbjct: 271 SMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKL 330

Query: 288 NGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLR 347
            G IPSS+GN  NL+ILYLY N L+G IP E+GN++ + DL+L+ N LTG IPSS GNL+
Sbjct: 331 TGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLK 390

Query: 348 ------------------------------------------------NLRLLYLYRNEL 359
                                                            L  LYL  N L
Sbjct: 391 NLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHL 450

Query: 360 SGSIPQAIGNLVELVSLL------------------------LGFNYFRGPIPKNFKNLT 395
           SG+IP  + N   L +L+                        L +N+  GPIPK+ ++  
Sbjct: 451 SGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCK 510

Query: 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
           +L+R R   N  +G+I EAF G YP L+F+D SHN FHG+ISS+W + P+LG L  S NN
Sbjct: 511 SLIRARFLGNKFTGDIFEAF-GIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNN 569

Query: 456 ITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTL 515
           ITG+IP EI N ++L  L+LS+N++ G++P  +G L++L++L LN NQL G +P  +  L
Sbjct: 570 ITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFL 629

Query: 516 TELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQN 575
           T LE LDLS N  S+ IP +  + LK+H +NLS N+F   IP +  KL  QL++LDLS N
Sbjct: 630 TNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLT-QLTQLDLSHN 687

Query: 576 FLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAF 635
            L+GEIPSQ+ +++SL KL+LS+N LSG IP  FE M  L+++DIS N+L+GP+P +  F
Sbjct: 688 QLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTF 747

Query: 636 RDAPAEALQGNRGLCGD--DKGLSSCKAFRSSRRASVKKLIIMILLPLLGVLA-LSIISI 692
           R A A+AL+ N GLC +   + L  C+  +  ++     L++ IL+P+LGVL  LSI + 
Sbjct: 748 RKATADALEENIGLCSNIPKQRLKPCRELKKPKKNG--NLVVWILVPILGVLVILSICAN 805

Query: 693 GLLFNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQG 752
              +  R+ K+  Q G+++       +S  +++GK  Y  II +TN+FD  + IG G   
Sbjct: 806 TFTYCIRKRKL--QNGRNTDPETGENMSIFSVDGKFKYQDIIESTNEFDPTHLIGTGGYS 863

Query: 753 SLYKAKLQSEDLIAVKKFNSQL 774
            +Y+A LQ + +IAVK+ +  +
Sbjct: 864 KVYRANLQ-DTIIAVKRLHDTI 884

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  417 bits (1073), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 290/829 (34%), Positives = 417/829 (50%), Gaps = 68/829 (8%)

Query: 1   FSLPVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERV 60
           FS  +     EE R LL++K  L   S   L SW     N    N C W+GI C H   V
Sbjct: 16  FSFILVRSLNEEGRVLLEFKAFLN-DSNGYLASW-----NQLDSNPCNWTGIACTHLRTV 69

Query: 61  VGINLTTTSLNGTLDEF--------------SFSSFP---------DLLFLNLFNNELFG 97
             ++L   +L+GTL                 +F S P          L  L+L  N   G
Sbjct: 70  TSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHG 129

Query: 98  IIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ 157
           +IP Q++ +  L+ L L  N L G IP +IG LS L EL +YSN L G IP S+  L + 
Sbjct: 130 VIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQL 189

Query: 158 SLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSG 217
            ++    N  SG IP  I    SL  L L+ N L GS+P  L  L NL  L L+ N LSG
Sbjct: 190 RIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSG 249

Query: 218 FIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSL 277
            IP ++G +  L  L +  N+ +G+IP  IG +  ++ L+LY+N+L+G IP+EIGNL   
Sbjct: 250 EIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDA 309

Query: 278 SNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337
           + +D S N+L G IP   G+  NL +L+L+ N L G IP+E+G L  L  L+LS+N L G
Sbjct: 310 AEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNG 369

Query: 338 VIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397
            IP  +  L  L  L L+ N+L G IP  IG       L +  N   GPIP +F     L
Sbjct: 370 TIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTL 429

Query: 398 VRVRMNQNNLSGNISE----------------AFVGTYPT-------LSFLDLSHNNFHG 434
           + + +  N LSGNI                     G+ P        L+ L+L  N   G
Sbjct: 430 ILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSG 489

Query: 435 QISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSL 494
            IS+D G+   L  L  + NN TG IPPEIGN +K+   N+SSN + G IP ELG   ++
Sbjct: 490 NISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTI 549

Query: 495 NKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSH 554
            +L L+ N+  G +  E+G L  LE+L LS+NRL+  IP S G+L ++  L L  N  S 
Sbjct: 550 QRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSE 609

Query: 555 KIPTQFEKL-QLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMH 613
            IP +  KL  LQ+S L++S N L G IP  + N++ L  L L+ N+LSG IP    ++ 
Sbjct: 610 NIPVELGKLTSLQIS-LNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLM 668

Query: 614 GLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASV--- 670
            L   +IS N L G VP +  F+   +    GN GLC   +  S C+       + +   
Sbjct: 669 SLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQR--SHCQPLVPHSDSKLNWL 726

Query: 671 ------KKLIIMILLPLLGVLALSIISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTL 724
                 +K++ +  + +  V  ++ + +      R    V+   Q+ P     +      
Sbjct: 727 INGSQRQKILTITCIVIGSVFLITFLGLCWTIKRREPAFVALEDQTKPDVMDSYYFP--- 783

Query: 725 EGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773
           +   TY  ++ AT +F E+  +G+GA G++YKA++   ++IAVKK NS+
Sbjct: 784 KKGFTYQGLVDATRNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLNSR 832

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 288/843 (34%), Positives = 418/843 (49%), Gaps = 118/843 (13%)

Query: 12  EARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLN 71
           E + LL+ K+   + ++  L +W     N+     C W+G+ C++               
Sbjct: 30  EGQYLLEIKSKF-VDAKQNLRNW-----NSNDSVPCGWTGVMCSN--------------- 68

Query: 72  GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLS 131
                  +SS P++L LNL +  L G + P I  L  L+ LDLS N LSGKIP EIG  S
Sbjct: 69  -------YSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCS 121

Query: 132 FLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL 191
            L  L L +N  +G IP  +G L     L +YNN +SG +P  IGNL+SLS L    N +
Sbjct: 122 SLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNI 181

Query: 192 IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVR 251
            G +P  +GNL  L +     N +SG +PS +G  + L  L ++ N LSG +P  IG ++
Sbjct: 182 SGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLK 241

Query: 252 NLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL 311
            L  + L+ NE SG IP+EI N  SL  L L  N+L G IP  +G+  +L  LYLY N L
Sbjct: 242 KLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGL 301

Query: 312 SGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLV 371
           +G+IP+EIGNL    +++ S N LTG IP  +GN+  L LLYL+ N+L+G+IP  +  L 
Sbjct: 302 NGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLK 361

Query: 372 ELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNN 431
            L  L L  N   GPIP  F+ L  L  +++ QN+LSG I    +G Y  L  LD+S N+
Sbjct: 362 NLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPK-LGWYSDLWVLDMSDNH 420

Query: 432 FHGQISSDW-----------------------------------------GRFPQ----- 445
             G+I S                                           GRFP      
Sbjct: 421 LSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQ 480

Query: 446 --LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503
             +  ++   N   GSIP E+GN S LQ L L+ N   G++P E+G LS L  L ++ N+
Sbjct: 481 VNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNK 540

Query: 504 LFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL 563
           L G +P EI     L+ LD+  N  S  +P  +G+L ++  L LSNN  S  IP     L
Sbjct: 541 LTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNL 600

Query: 564 QLQLSELDLSQNFLEGEIPSQICNMESL-VKLNLSYNQL--------------------- 601
             +L+EL +  N   G IP ++ ++  L + LNLSYN+L                     
Sbjct: 601 S-RLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNN 659

Query: 602 ---SGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSS 658
              SG IP+ F ++  L   + SYN L GP+P     R+    +  GN GLCG    L+ 
Sbjct: 660 NNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL---LRNISMSSFIGNEGLCGPP--LNQ 714

Query: 659 C---KAFRSSRRASV-----KKLIIMILLPLLGVLALSIISIGLLFNSRRTKMVSQTGQS 710
           C   + F  S+            II I   ++G ++L +I++ +    R  + V+ + Q 
Sbjct: 715 CIQTQPFAPSQSTGKPGGMRSSKIIAITAAVIGGVSLMLIALIVYLMRRPVRTVASSAQD 774

Query: 711 -SPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKK 769
             P+  S  +     EG  T+  ++ AT++FDE + +G+GA G++YKA L +   +AVKK
Sbjct: 775 GQPSEMSLDIYFPPKEG-FTFQDLVAATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKK 833

Query: 770 FNS 772
             S
Sbjct: 834 LAS 836

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 271/746 (36%), Positives = 393/746 (52%), Gaps = 42/746 (5%)

Query: 60  VVGINLTTTSLNGTL-DEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANK 118
           +V +NL   +L G +  E    S  +++FLN  NN+  G IP +I++L +L+  ++  NK
Sbjct: 111 LVYLNLAYNALTGDIPREIGNCSKLEVMFLN--NNQFGGSIPVEINKLSQLRSFNICNNK 168

Query: 119 LSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNL 178
           LSG +P EIG L  L EL  Y+N L G +P+SLGNL+K +      N  SG IP  IG  
Sbjct: 169 LSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKC 228

Query: 179 ISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH 238
           ++L  L L+ N + G +P  +G L  L  + L+ N  SGFIP  +G L  L  L +  N 
Sbjct: 229 LNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNS 288

Query: 239 LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNS 298
           L G IPS IGN+++L+ L+LY N+L+G+IPKE+G L  +  +D S N L+G IP  +   
Sbjct: 289 LVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKI 348

Query: 299 NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNE 358
           + L +LYL+ N+L+G IP E+  L+ L  L+LS+N+LTG IP    NL ++R L L+ N 
Sbjct: 349 SELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNS 408

Query: 359 LSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEA---- 414
           LSG IPQ +G    L  +    N   G IP      +NL+ + +  N + GNI       
Sbjct: 409 LSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRC 468

Query: 415 ------------FVGTYPT-------LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
                         G +PT       LS ++L  N F G +  + G   +L  L  + N 
Sbjct: 469 KSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQ 528

Query: 456 ITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTL 515
            + ++P EI   S L   N+SSN + G IP E+     L +L L++N   GSLPPE+G+L
Sbjct: 529 FSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSL 588

Query: 516 TELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQN 575
            +LE+L LSENR S  IP ++GNL  +  L +  N FS  IP Q   L      ++LS N
Sbjct: 589 HQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYN 648

Query: 576 FLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAF 635
              GEIP +I N+  L+ L+L+ N LSG IP  FE++  L   + SYN L G +P ++ F
Sbjct: 649 DFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIF 708

Query: 636 RDAPAEALQGNRGLCGD-----DKGLSSCKAFRSSRRASVKK---LIIMILLPLLGVLAL 687
           ++    +  GN+GLCG      D   SS     S +  S ++   +II+  +     L L
Sbjct: 709 QNMTLTSFLGNKGLCGGHLRSCDPSHSSWPHISSLKAGSARRGRIIIIVSSVIGGISLLL 768

Query: 688 SIISIGLLFNSRRTKMVSQTGQSSPANASGFLST---LTLEGKITYDQIIRATNDFDEEY 744
             I +  L N      V  T          F  +      + + T   I+ AT  F + Y
Sbjct: 769 IAIVVHFLRNP-----VEPTAPYVHDKEPFFQESDIYFVPKERFTVKDILEATKGFHDSY 823

Query: 745 CIGKGAQGSLYKAKLQSEDLIAVKKF 770
            +G+GA G++YKA + S   IAVKK 
Sbjct: 824 IVGRGACGTVYKAVMPSGKTIAVKKL 849

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 279/762 (36%), Positives = 395/762 (51%), Gaps = 68/762 (8%)

Query: 70  LNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQ 129
           LNGT+         +L  LNL NN L G IP Q+ ++ +LQYL L AN+L G IP  +  
Sbjct: 227 LNGTIPA-ELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLAD 285

Query: 130 LSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSL 188
           L  L  L L +N L G IP+   N+S+   L L NN LSG +P  +  N  +L  L LS 
Sbjct: 286 LGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSG 345

Query: 189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248
            QL G +P  L    +L  L L NNSL+G IP  L +L  L++L +  N L G +  SI 
Sbjct: 346 TQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSIS 405

Query: 249 NVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYS 308
           N+ NL+ L LY N L G +PKEI  LR L  L L  NR +G IP  IGN  +L ++ ++ 
Sbjct: 406 NLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFG 465

Query: 309 NQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIG 368
           N   G IP  IG LK L  L L  N L G +P+S+GN   L +L L  N+LSGSIP + G
Sbjct: 466 NHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFG 525

Query: 369 NLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSF---- 424
            L  L  L+L  N  +G +P +  +L NL R+ ++ N L+G I     G+   LSF    
Sbjct: 526 FLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGSSSYLSFDVTN 584

Query: 425 -------------------LDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIG 465
                              L L  N   G+I    G+  +L  LD S N +TG+IP ++ 
Sbjct: 585 NGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLV 644

Query: 466 NSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ---------------------- 503
              KL  ++L++N + G IP  LG+LS L +L L+ NQ                      
Sbjct: 645 LCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDG 704

Query: 504 --LFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFE 561
             L GS+P EIG L  L +L+L +N+ S ++P ++G L K++ L LS N  + +IP +  
Sbjct: 705 NSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIG 764

Query: 562 KLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDIS 621
           +LQ   S LDLS N   G+IPS I  +  L  L+LS+NQL+G +P    DM  L  +++S
Sbjct: 765 QLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVS 824

Query: 622 YNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRA---SVKKLIIMIL 678
           +N L G +   K F   PA++  GN GLCG    LS C   RS+ +    S + ++I+  
Sbjct: 825 FNNLGGKL--KKQFSRWPADSFLGNTGLCGSP--LSRCNRVRSNNKQQGLSARSVVIISA 880

Query: 679 LPLLGVLALSIISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTL----------EGKI 728
           +  L  + L I+ I L F  +R     + G  S A  S   S+             +  I
Sbjct: 881 ISALTAIGLMILVIALFF-KQRHDFFKKVGHGSTAYTSSSSSSQATHKPLFRNGASKSDI 939

Query: 729 TYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKF 770
            ++ I+ AT++  EE+ IG G  G +YKA+L++ + +AVKK 
Sbjct: 940 RWEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKI 981

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 276/756 (36%), Positives = 389/756 (51%), Gaps = 60/756 (7%)

Query: 70  LNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQ 129
           LNG+L     +   +L  LNL +N   G IP Q+  L  +QYL+L  N+L G IP  + +
Sbjct: 228 LNGSLPA-ELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTE 286

Query: 130 LSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVI-GNLISLSTLDLSL 188
           L+ L  L L SN L G I +    +++   L L  N LSG +P  I  N  SL  L LS 
Sbjct: 287 LANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSE 346

Query: 189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248
            QL G +P  + N  +L  L L NN+L+G IP +L +L  L+NL ++ N L G + SSI 
Sbjct: 347 TQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSIS 406

Query: 249 NVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYS 308
           N+ NL+   LY N L G +PKEIG L  L  + L  NR +G +P  IGN   L  +  Y 
Sbjct: 407 NLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYG 466

Query: 309 NQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIG 368
           N+LSG IP  IG LK L  L L  N L G IP+S+GN   + ++ L  N+LSGSIP + G
Sbjct: 467 NRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFG 526

Query: 369 NLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNIS---------------E 413
            L  L   ++  N  +G +P +  NL NL R+  + N  +G+IS                
Sbjct: 527 FLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTEN 586

Query: 414 AFVGTYP-------TLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGN 466
            F G  P        L  L L  N F G+I   +G+  +L  LD S N+++G IP E+G 
Sbjct: 587 GFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL 646

Query: 467 SSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPP---------------- 510
             KL  ++L++N++ G IP  LG+L  L +L L+ N+  GSLP                 
Sbjct: 647 CKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGN 706

Query: 511 --------EIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK 562
                   EIG L  L  L+L EN+LS  +P ++G L K+  L LS N  + +IP +  +
Sbjct: 707 SLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQ 766

Query: 563 LQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISY 622
           LQ   S LDLS N   G IPS I  +  L  L+LS+NQL G +P    DM  L  +++SY
Sbjct: 767 LQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSY 826

Query: 623 NRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSC--KAFRSSRRASVKKLIIMILLP 680
           N L+G +   K F    A+A  GN GLCG    LS C     ++ R  S K ++I+  + 
Sbjct: 827 NNLEGKL--KKQFSRWQADAFVGNAGLCGSP--LSHCNRAGSKNQRSLSPKTVVIISAIS 882

Query: 681 LLGVLALSIISIGLLFNSRRTKMVSQTG------QSSPANASGFLSTLTLEGKITYDQII 734
            L  +AL ++ I L F           G       +S ++ +   S    +  I +D I+
Sbjct: 883 SLAAIALMVLVIILFFKQNHDLFKKVRGGNSAFSSNSSSSQAPLFSNGGAKSDIKWDDIM 942

Query: 735 RATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKF 770
            AT+  +EE+ IG G  G +YKA+L++ + IAVKK 
Sbjct: 943 EATHYLNEEFMIGSGGSGKVYKAELKNGETIAVKKI 978

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 273/805 (33%), Positives = 420/805 (52%), Gaps = 52/805 (6%)

Query: 1   FSLPVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDER- 59
           F +  +S ST E  AL+ W     +HS +  P    S  N +  + C W  I C+  +  
Sbjct: 28  FFISSTSASTNEVSALISW-----LHSSNSPPPSVFSGWNPSDSDPCQWPYITCSSSDNK 82

Query: 60  ------VVGINL-------------------TTTSLNGTLDEFSFSSFPDLLFLNLFNNE 94
                 VV + L                   + T+L G +         +L+ ++L +N 
Sbjct: 83  LVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTGAISS-EIGDCSELIVIDLSSNS 141

Query: 95  LFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNL 154
           L G IP  + +L  LQ L L++N L+GKIPPE+G    L  L ++ N L+ ++P  LG +
Sbjct: 142 LVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKI 201

Query: 155 SK-QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNN 213
           S  +S+ +  N+ LSG IP  IGN  +L  L L+  ++ GS+P  LG L+ L +L +++ 
Sbjct: 202 STLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYST 261

Query: 214 SLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGN 273
            LSG IP  LG    L NL +  N LSG +P  +G ++NL  + L+ N L G IP+EIG 
Sbjct: 262 MLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGF 321

Query: 274 LRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMN 333
           ++SL+ +DLS+N  +G IP S GN +NL  L L SN ++GSIP  + N   L   ++  N
Sbjct: 322 MKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDAN 381

Query: 334 NLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKN 393
            ++G+IP  IG L+ L +   ++N+L G+IP  +     L +L L  NY  G +P     
Sbjct: 382 QISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQ 441

Query: 394 LTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSV 453
           L NL ++ +  N +SG I    +G   +L  L L +N   G+I    G    L  LD S 
Sbjct: 442 LRNLTKLLLISNAISGVIPLE-IGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSE 500

Query: 454 NNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIG 513
           NN++G +P EI N  +LQ+LNLS+N + G +P+ L  L+ L  L ++ N L G +P  +G
Sbjct: 501 NNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLG 560

Query: 514 TLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLS 573
            L  L  L LS+N  +  IP SLG+   +  L+LS+N  S  IP +   +Q     L+LS
Sbjct: 561 HLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLS 620

Query: 574 QNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK 633
            N L+G IP +I  +  L  L++S+N LSG + +    +  L S++IS+NR  G +P SK
Sbjct: 621 WNSLDGFIPERISALNRLSVLDISHNMLSGDL-SALSGLENLVSLNISHNRFSGYLPDSK 679

Query: 634 AFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVK-------KLIIMILLPLLGVLA 686
            FR      ++GN GLC   KG  SC    SS+  + +       ++ I +L+ +  VLA
Sbjct: 680 VFRQLIGAEMEGNNGLC--SKGFRSCFVSNSSQLTTQRGVHSHRLRIAIGLLISVTAVLA 737

Query: 687 LSIISIGLLFNSRRTKMVSQTGQSSPA-NASGFLSTLTLEGKITYDQIIRATNDFDEEYC 745
           +    +G+L   R  +M+     S    N   +  T   +   T + +++      E   
Sbjct: 738 V----LGVLAVIRAKQMIRDDNDSETGENLWTWQFTPFQKLNFTVEHVLKC---LVEGNV 790

Query: 746 IGKGAQGSLYKAKLQSEDLIAVKKF 770
           IGKG  G +YKA++ + ++IAVKK 
Sbjct: 791 IGKGCSGIVYKAEMPNREVIAVKKL 815

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGR3|Y4265_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1

 Score =  363 bits (932), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 286/790 (36%), Positives = 416/790 (52%), Gaps = 50/790 (6%)

Query: 11  EEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSL 70
           ++ +ALL WK+ L I S     SW ++  +      C W G+ CN    V  I L    L
Sbjct: 27  QQGQALLSWKSQLNI-SGDAFSSWHVADTSP-----CNWVGVKCNRRGEVSEIQLKGMDL 80

Query: 71  NGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQL 130
            G+L   S  S   L  L L +  L G+IP +I    +L+ LDLS N LSG IP EI +L
Sbjct: 81  QGSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSGDIPVEIFRL 140

Query: 131 SFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQ 190
             L  LSL +N L G IP  +GNLS    L L++N LSG IP  IG L +L  L    N+
Sbjct: 141 KKLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFDNKLSGEIPRSIGELKNLQVLRAGGNK 200

Query: 191 -LIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLK---------------------- 227
            L G +P+ +GN  NLV L L   SLSG +P+++G LK                      
Sbjct: 201 NLRGELPWEIGNCENLVMLGLAETSLSGKLPASIGNLKRVQTIAIYTSLLSGPIPDEIGY 260

Query: 228 C--LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSIN 285
           C  L NL +  N +SG+IP++IG ++ L+SL L+ N L G IP E+GN   L  +D S N
Sbjct: 261 CTELQNLYLYQNSISGSIPTTIGGLKKLQSLLLWQNNLVGKIPTELGNCPELWLIDFSEN 320

Query: 286 RLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGN 345
            L G IP S G   NL  L L  NQ+SG+IP+E+ N   L  LE+  N +TG IPS + N
Sbjct: 321 LLTGTIPRSFGKLENLQELQLSVNQISGTIPEELTNCTKLTHLEIDNNLITGEIPSLMSN 380

Query: 346 LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQN 405
           LR+L + + ++N+L+G+IPQ++    EL ++ L +N   G IPK    L NL ++ +  N
Sbjct: 381 LRSLTMFFAWQNKLTGNIPQSLSQCRELQAIDLSYNSLSGSIPKEIFGLRNLTKLLLLSN 440

Query: 406 NLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIG 465
           +LSG I    +G    L  L L+ N   G I S+ G    L  +D S N + GSIPP I 
Sbjct: 441 DLSGFIPPD-IGNCTNLYRLRLNGNRLAGSIPSEIGNLKNLNFVDISENRLVGSIPPAIS 499

Query: 466 NSSKLQVLNLSSNHIGGKIPMELGRL--SSLNKLILNKNQLFGSLPPEIGTLTELELLDL 523
               L+ L+L +N + G +   LG     SL  +  + N L  +LPP IG LTEL  L+L
Sbjct: 500 GCESLEFLDLHTNSLSGSL---LGTTLPKSLKFIDFSDNALSSTLPPGIGLLTELTKLNL 556

Query: 524 SENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPS 583
           ++NRLS  IP  +     +  LNL  N+FS +IP +  ++      L+LS N   GEIPS
Sbjct: 557 AKNRLSGEIPREISTCRSLQLLNLGENDFSGEIPDELGQIPSLAISLNLSCNRFVGEIPS 616

Query: 584 QICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEAL 643
           +  ++++L  L++S+NQL+G + N   D+  L S++ISYN   G +P +  FR  P   L
Sbjct: 617 RFSDLKNLGVLDVSHNQLTGNL-NVLTDLQNLVSLNISYNDFSGDLPNTPFFRRLPLSDL 675

Query: 644 QGNRGLCGDDKGLSSCKAFRSSRRASVKKLIIMILLPLLGVLALSIISIGLLFNSRRTKM 703
             NRGL   +    S +   ++R +SV +L I+IL  ++    L ++++  L  +R    
Sbjct: 676 ASNRGLYISNA--ISTRPDPTTRNSSVVRLTILIL--VVVTAVLVLMAVYTLVRAR---- 727

Query: 704 VSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSED 763
            +   Q        +  TL  +   + D I++   +      IG G+ G +Y+  + S +
Sbjct: 728 -AAGKQLLGEEIDSWEVTLYQKLDFSIDDIVK---NLTSANVIGTGSSGVVYRITIPSGE 783

Query: 764 LIAVKKFNSQ 773
            +AVKK  S+
Sbjct: 784 SLAVKKMWSK 793

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  347 bits (889), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 263/765 (34%), Positives = 372/765 (48%), Gaps = 138/765 (18%)

Query: 99  IPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS 158
           +P  +     LQ L +S   L+G +P  +G    L  L L SN L G IP SL  L    
Sbjct: 97  LPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLE 156

Query: 159 LLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNL---------------- 202
            L L +N L+G IPP I     L +L L  N L GS+P  LG L                
Sbjct: 157 TLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISG 216

Query: 203 ---------TNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL 253
                    +NL  L L   S+SG +PS+LGKLK L  L++    +SG IPS +GN   L
Sbjct: 217 QIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSEL 276

Query: 254 RSLFLYSNELSGSIPKEIGNLRSLSNL------------------------DLSINRLNG 289
             LFLY N LSGSIP+EIG L  L  L                        DLS+N L+G
Sbjct: 277 VDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSG 336

Query: 290 VIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNL 349
            IPSSIG  + L    +  N+ SGSIP  I N   L  L+L  N ++G+IPS +G L  L
Sbjct: 337 SIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKL 396

Query: 350 RLLYLYRNELSGSIPQAIGNLVE------------------------LVSLLLGFNYFRG 385
            L + + N+L GSIP  + +  +                        L  LLL  N   G
Sbjct: 397 TLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSG 456

Query: 386 PIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQ 445
            IP+   N ++LVR+R+  N ++G I    +G+   ++FLD S N  HG++  + G   +
Sbjct: 457 FIPQEIGNCSSLVRLRLGFNRITGEIPSG-IGSLKKINFLDFSSNRLHGKVPDEIGSCSE 515

Query: 446 LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF 505
           L  +D S N++ GS+P  + + S LQVL++S+N   GKIP  LGRL SLNKLIL+KN   
Sbjct: 516 LQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFS 575

Query: 506 GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHY-LNLSNNEFSHKIPTQFEKLQ 564
           GS+P  +G  + L+LLDL  N LS  IP  LG++  +   LNLS+N  + KIP++   L 
Sbjct: 576 GSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLN 635

Query: 565 LQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNR 624
            +LS LDLS N LEG++ + + N+E+LV LN+SYN  SG++P+                 
Sbjct: 636 -KLSILDLSHNMLEGDL-APLANIENLVSLNISYNSFSGYLPD----------------- 676

Query: 625 LQGPVPFSKAFRDAPAEALQGNRGLC-----------------GDDKGLSSCKAFRSSRR 667
                  +K FR    + L+GN+ LC                 GDD   S  +  R +  
Sbjct: 677 -------NKLFRQLSPQDLEGNKKLCSSTQDSCFLTYRKGNGLGDDGDASRTRKLRLTLA 729

Query: 668 ASVKKLIIMILLPLLGVLALSIISIGLLFNSRRTKMVSQT--GQSSPANASGFLSTLTLE 725
             +   +++++L      A+++I      ++ R   + +T   Q +P     F       
Sbjct: 730 LLITLTVVLMILG-----AVAVIRARRNIDNERDSELGETYKWQFTPFQKLNF------- 777

Query: 726 GKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKF 770
              + DQIIR      E   IGKG  G +Y+A + + ++IAVKK 
Sbjct: 778 ---SVDQIIRC---LVEPNVIGKGCSGVVYRADVDNGEVIAVKKL 816

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	775
359491512	1078	PREDICTED: probable LRR receptor-like se	0.952	0.684	0.503	0.0
225456161	1037	PREDICTED: probable LRR receptor-like se	0.953	0.712	0.5	0.0
225456159	1038	PREDICTED: probable LRR receptor-like se	0.953	0.711	0.496	0.0
255545702	1008	receptor protein kinase, putative [Ricin	0.953	0.733	0.503	0.0
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.940	0.706	0.483	0.0
359491509	1032	PREDICTED: probable LRR receptor-like se	0.940	0.706	0.480	1e-179
147772402	996	hypothetical protein VITISV_022117 [Viti	0.936	0.728	0.478	1e-177
359484864	1091	PREDICTED: probable LRR receptor-like se	0.932	0.662	0.448	1e-167
297846642	1007	hypothetical protein ARALYDRAFT_891227 [	0.945	0.727	0.439	1e-164
186511602	1045	Leucine-rich repeat-containing protein [	0.974	0.722	0.439	1e-164

>gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/782 (50%), Positives = 499/782 (63%), Gaps = 44/782 (5%)

Query: 5   VSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSP----------VNATKKNLCAWSGIYC 54
           + SDS EE +ALLKWK++L  H+ S L SWTL P           + T    C W GI C
Sbjct: 53  MKSDSNEETQALLKWKSTLHNHNHSFLLSWTLYPDPNNSTNSSTHHGTATGPCKWYGISC 112

Query: 55  NHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDL 114
           NH   V+ INLT + L GTL  FSFSSFP+L ++++  N L G IPPQI  L KL+YLDL
Sbjct: 113 NHAGSVIRINLTESGLRGTLQAFSFSSFPNLAYVDVCINNLSGPIPPQIGLLSKLKYLDL 172

Query: 115 SANKLSGKIPPEIG---QLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYI 171
           S N+ SG IPPEIG    L  L  L+LY+N L GSIP SLGNLS  + L LY N LSG I
Sbjct: 173 STNQFSGGIPPEIGLLTNLEVLHLLALYTNQLEGSIPASLGNLSNLASLYLYENQLSGSI 232

Query: 172 PPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN 231
           PP +GNL +L  +    N L G +P   GNL  L TL+LFNN LSG IP  +G L  L  
Sbjct: 233 PPEMGNLANLVEIYSDTNNLTGLIPSTFGNLKRLTTLYLFNNQLSGHIPPEIGNLTSLQG 292

Query: 232 LNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVI 291
           +++  N+LSG IP+S+G++  L  L LY+N+LSG IP EIGNL+SL +L+LS N+LNG I
Sbjct: 293 ISLYANNLSGPIPASLGDLSGLTLLHLYANQLSGPIPPEIGNLKSLVDLELSENQLNGSI 352

Query: 292 PSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRL 351
           P+S+GN  NL IL+L  N LSG  PKEIG L  L  LE+                     
Sbjct: 353 PTSLGNLTNLEILFLRDNHLSGYFPKEIGKLHKLVVLEIDT------------------- 393

Query: 352 LYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNI 411
                N LSGS+P+ I     LV   +  N   GPIPK+ KN  NL R     N L+GNI
Sbjct: 394 -----NRLSGSLPEGICQGGSLVRFTVSDNLLSGPIPKSMKNCRNLTRALFGGNQLTGNI 448

Query: 412 SEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQ 471
           SE  VG  P L ++DLS+N FHG++S +WGR PQL  L+ + N+ITGSIP + G S+ L 
Sbjct: 449 SEV-VGDCPNLEYIDLSYNRFHGELSHNWGRCPQLQRLEMAGNDITGSIPEDFGISTNLT 507

Query: 472 VLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNA 531
           +L+LSSNH+ G+IP ++G L+SL +L LN NQL GS+PPE+G+L  L  LDLS NRL+ +
Sbjct: 508 LLDLSSNHLVGEIPKKMGSLTSLLELKLNDNQLSGSIPPELGSLFSLAHLDLSANRLNGS 567

Query: 532 IPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESL 591
           I  +LG  L +HYLNLSNN+ S++IP Q  KL   LS+LDLS N L GEIP QI  +ESL
Sbjct: 568 ITENLGACLNLHYLNLSNNKLSNRIPAQMGKLS-HLSQLDLSHNLLSGEIPPQIEGLESL 626

Query: 592 VKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCG 651
             LNLS+N LSGFIP  FE+M GLS IDISYN+LQGP+P SKAFRDA  E L+GN+ LCG
Sbjct: 627 ENLNLSHNNLSGFIPKAFEEMRGLSDIDISYNQLQGPIPNSKAFRDATIELLKGNKDLCG 686

Query: 652 DDKGLSSCKAFRSSRRASVK---KLIIMILLPLLGVLALSIISIGLLFNSRRTKMVSQTG 708
           + KGL  CK    + +  VK   K++ +I+ PLLG L L    IG+   + RTK   +  
Sbjct: 687 NVKGLQPCKNDSGAGQQPVKKGHKIVFIIVFPLLGALVLLFAFIGIFLIAERTKRTPEIE 746

Query: 709 QSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVK 768
           +    N     S  T +G+  Y++II+AT DFD  YCIGKG  GS+YKA+L S +++AVK
Sbjct: 747 EGDVQN--DLFSISTFDGRAMYEEIIKATKDFDPMYCIGKGGHGSVYKAELSSGNIVAVK 804

Query: 769 KF 770
           K 
Sbjct: 805 KL 806

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/802 (50%), Positives = 508/802 (63%), Gaps = 63/802 (7%)

Query: 5   VSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVN--------ATKKNLCAWSGIYCNH 56
           VSS S EE +ALLKWK +L  H+ S L SWTL P N         T+ + C W GI CNH
Sbjct: 27  VSSYSNEETQALLKWKATLHNHNHSSLLSWTLYPNNFTNSSTHLGTEVSPCKWYGISCNH 86

Query: 57  DERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSA 116
              V+ INLT + L GTL  FSFSSFP+L ++++  N L G IPPQI  L KL+YLDLS 
Sbjct: 87  AGSVIRINLTESGLGGTLQAFSFSSFPNLAYVDISMNNLSGPIPPQIGLLSKLKYLDLSI 146

Query: 117 NKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIG 176
           N+ SG IPPEIG L+ L  L L  N LNGSI                        P  IG
Sbjct: 147 NQFSGGIPPEIGLLTNLEVLHLVQNQLNGSI------------------------PHEIG 182

Query: 177 NLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236
            L SL  L L  NQL GS+P  LGNL+NL +L+L+ N LSG IP  +G L  L  L    
Sbjct: 183 QLTSLYELALYTNQLEGSIPASLGNLSNLASLYLYENQLSGSIPPEMGNLTNLVQLYSDT 242

Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIG 296
           N+L+G IPS+ GN+++L  L+L++N LSG IP EIGNL+SL  L L  N L+G IP S+ 
Sbjct: 243 NNLTGPIPSTFGNLKHLTVLYLFNNSLSGPIPPEIGNLKSLQGLSLYGNNLSGPIPVSLC 302

Query: 297 NSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYR 356
           + + L++L+LY+NQLSG IP+EIGNLK L DLELS N L G IP+S+GNL NL +L+L  
Sbjct: 303 DLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRD 362

Query: 357 NELSGSIPQAIGNLVELVSL------LLGF------------------NYFRGPIPKNFK 392
           N LSG  PQ IG L +LV L      L G                   N+  GPIPK+ K
Sbjct: 363 NRLSGYFPQEIGKLHKLVVLEIDTNQLFGSLPEGICQGGSLERFTVSDNHLSGPIPKSLK 422

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452
           N  NL R     N L+GN+SE  VG  P L F+DLS+N FHG++S +WGR PQL  L+ +
Sbjct: 423 NCRNLTRALFQGNRLTGNVSEV-VGDCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIA 481

Query: 453 VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI 512
            NNITGSIP + G S+ L +L+LSSNH+ G+IP ++G L+SL  LILN NQL GS+PPE+
Sbjct: 482 GNNITGSIPEDFGISTNLILLDLSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPEL 541

Query: 513 GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDL 572
           G+L+ LE LDLS NRL+ +IP  LG+ L +HYLNLSNN+ SH IP Q  KL   LS+LDL
Sbjct: 542 GSLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKLSHGIPVQMGKLS-HLSQLDL 600

Query: 573 SQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS 632
           S N L G IP+QI  +ESL  L+LS+N L GFIP  FEDM  LS +DISYN+LQGP+P S
Sbjct: 601 SHNLLTGGIPAQIQGLESLEMLDLSHNNLCGFIPKAFEDMPALSYVDISYNQLQGPIPHS 660

Query: 633 KAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVK---KLIIMILLPLLGVLALSI 689
            AFR+A  E L+GN+ LCG+ KGL  CK      +  VK   K++ +I+ PLLG L L  
Sbjct: 661 NAFRNATIEVLKGNKDLCGNVKGLQPCKYGFGVDQQPVKKSHKVVFIIIFPLLGALVLLS 720

Query: 690 ISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKG 749
             IG+   + R +   +  +    N    LS  T +G+  Y++II+AT DFD  YCIGKG
Sbjct: 721 AFIGIFLIAERRERTPEIEEGDVQN--NLLSISTFDGRAMYEEIIKATKDFDPMYCIGKG 778

Query: 750 AQGSLYKAKLQSEDLIAVKKFN 771
             GS+YKA+L S +++AVKK +
Sbjct: 779 GHGSVYKAELPSGNIVAVKKLH 800

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/802 (49%), Positives = 510/802 (63%), Gaps = 63/802 (7%)

Query: 5   VSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNL--------CAWSGIYCNH 56
           VSS S EE +ALLKWK SLQ H+ S L SW L P N+T  +         C W GI CNH
Sbjct: 27  VSSYSNEETQALLKWKASLQNHNHSSLLSWDLYPNNSTNSSTHLGTATSPCKWYGISCNH 86

Query: 57  DERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSA 116
              V+ INLT + LNGTL +FSFSSFP+L ++++  N L G IPPQI  LF+L+YLDLS 
Sbjct: 87  AGSVIKINLTESGLNGTLMDFSFSSFPNLAYVDISMNNLSGPIPPQIGLLFELKYLDLSI 146

Query: 117 NKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIG 176
           N+ SG IP EIG L+ L                         +L L  N L+G IP  IG
Sbjct: 147 NQFSGGIPSEIGLLTNLE------------------------VLHLVQNQLNGSIPHEIG 182

Query: 177 NLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236
            L SL  L L  NQL GS+P  LGNL+NL +L+L+ N LSG IP  +G L  L  +  + 
Sbjct: 183 QLASLYELALYTNQLEGSIPASLGNLSNLASLYLYENQLSGSIPPEMGNLTNLVEIYSNN 242

Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIG 296
           N+L+G IPS+ GN++ L  L+L++N LSG IP EIGNL+SL  L L  N L+G IP S+ 
Sbjct: 243 NNLTGPIPSTFGNLKRLTVLYLFNNSLSGPIPPEIGNLKSLQELSLYENNLSGPIPVSLC 302

Query: 297 NSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYR 356
           + + L++L+LY+NQLSG IP+EIGNLK L DLELS N L G IP+S+GNL NL +L+L  
Sbjct: 303 DLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRD 362

Query: 357 NELSGSIPQAIGNLVELVSL--------------------LLGF----NYFRGPIPKNFK 392
           N+LSG IPQ IG L +LV L                    L+ F    N+  GPIPK+ K
Sbjct: 363 NQLSGYIPQEIGKLHKLVVLEIDTNQLFGSLPEGICQAGSLVRFAVSDNHLSGPIPKSLK 422

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452
           N  NL R     N L+GNISE  VG  P L F+DLS+N FHG++S +WGR PQL  L+ +
Sbjct: 423 NCRNLTRALFQGNRLTGNISEV-VGDCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIA 481

Query: 453 VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI 512
            NNITGSIP + G S+ L +L+LSSNH+ G+IP ++G L+SL  LILN NQL GS+PPE+
Sbjct: 482 GNNITGSIPEDFGISTNLTLLDLSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPEL 541

Query: 513 GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDL 572
           G+L+ LE LDLS NRL+ +IP  LG+ L +HYLNLSNN+ SH IP Q  KL   LS+LDL
Sbjct: 542 GSLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKLSHGIPVQMGKLS-HLSQLDL 600

Query: 573 SQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS 632
           S N L G IP QI  ++SL  L+LS+N L GFIP  FEDM  LS +DISYN+LQGP+P S
Sbjct: 601 SHNLLAGGIPPQIQGLQSLEMLDLSHNNLCGFIPKAFEDMPALSYVDISYNQLQGPIPHS 660

Query: 633 KAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVK---KLIIMILLPLLGVLALSI 689
            AFR+A  E L+GN+ LCG+ KGL  CK      +  VK   K++ +I+ PLLG L L  
Sbjct: 661 NAFRNATIEVLKGNKDLCGNVKGLQPCKYGFGVDQQPVKKSHKVVFIIIFPLLGALVLLF 720

Query: 690 ISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKG 749
             IG+   + R +   +  +    N     S    +G+  Y++II+AT DFD  YCIGKG
Sbjct: 721 AFIGIFLIAERRERTPEIEEGDVQN--DLFSISNFDGRTMYEEIIKATKDFDPMYCIGKG 778

Query: 750 AQGSLYKAKLQSEDLIAVKKFN 771
             GS+YKA+L S +++AVKK +
Sbjct: 779 GHGSVYKAELPSSNIVAVKKLH 800

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545702|ref|XP_002513911.1| receptor protein kinase, putative [Ricinus communis] gi|223546997|gb|EEF48494.1| receptor protein kinase, putative [Ricinus communis]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/775 (50%), Positives = 521/775 (67%), Gaps = 36/775 (4%)

Query: 5   VSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNL----CAWSGIYCNHDERV 60
           ++SDS E+A +LLKW  +L     S    W L P N+T  N     C W G+ CN    V
Sbjct: 26  IASDSAEQANSLLKWAATLHNQKYSNRSPWPLLPENSTNPNAKTSPCTWLGLSCNRGGSV 85

Query: 61  VGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLS 120
           V INLTT+ LNGTL E SFS+FPDL FL+L  N L   IP +I+QL KL +LDLS+N+LS
Sbjct: 86  VRINLTTSGLNGTLHELSFSAFPDLEFLDLSCNSLSSTIPLEITQLPKLIFLDLSSNQLS 145

Query: 121 GKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLIS 180
           G IPP+IG L+ L+ L L +N L+GSIP S+GNL++ + L LY+N  SG IP  +GNL +
Sbjct: 146 GVIPPDIGLLTNLNTLRLSANRLDGSIPSSVGNLTELAWLHLYDNRFSGSIPSEMGNLKN 205

Query: 181 LSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240
           L  L +  N L GS+P   G+LT LV L L+NN LSG IP  LG LK L++L++  N+LS
Sbjct: 206 LVELFMDTNLLTGSIPSTFGSLTKLVQLFLYNNQLSGHIPQELGDLKSLTSLSLFGNNLS 265

Query: 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNN 300
           G IP+S+G + +L  L LY N+LSG+IPKE+GNL SLSNL+LS N+L G IP+S+GN + 
Sbjct: 266 GPIPASLGGLTSLTILHLYQNQLSGTIPKELGNLNSLSNLELSENKLTGSIPASLGNLSR 325

Query: 301 LSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS 360
           L +L+L +NQLSG IP++I NL  L  L+L  N LTG +P +I   + L+   +  N L 
Sbjct: 326 LELLFLKNNQLSGPIPEQIANLSKLSLLQLQSNQLTGYLPQNICQSKVLQNFSVNDNRLE 385

Query: 361 GSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYP 420
           G                        PIPK+ ++  +LVR+ +  N   GNISE F G YP
Sbjct: 386 G------------------------PIPKSMRDCKSLVRLHLEGNQFIGNISEDF-GVYP 420

Query: 421 TLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHI 480
            L F+D+ +N FHG+ISS WG  P LGTL  S NNI+G IPPEIGN+++LQ L+ SSN +
Sbjct: 421 YLQFVDIRYNKFHGEISSKWGMCPHLGTLLISGNNISGIIPPEIGNAARLQGLDFSSNQL 480

Query: 481 GGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLL 540
            G+IP ELG+L+SL ++ L  NQL   +P E G+LT+LE LDLS NR + +IPG++GNL+
Sbjct: 481 VGRIPKELGKLTSLVRVNLEDNQLSDGVPSEFGSLTDLESLDLSANRFNQSIPGNIGNLV 540

Query: 541 KVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQ 600
           K++YLNLSNN+FS +IP Q  KL + LS+LDLSQNFL GEIPS++  M+SL  LNLS N 
Sbjct: 541 KLNYLNLSNNQFSQEIPIQLGKL-VHLSKLDLSQNFLIGEIPSELSGMQSLEVLNLSRNN 599

Query: 601 LSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCK 660
           LSGFIP   ++MHGLSSIDISYN+L+GPVP +KAF+++  EA QGN+GLCG  +GL  CK
Sbjct: 600 LSGFIPGDLKEMHGLSSIDISYNKLEGPVPDNKAFQNSSIEAFQGNKGLCGHVQGLQPCK 659

Query: 661 AFRSSRRASV---KKLIIMILLPLLGV-LALSIISIGLLFNSRRTKMVSQTGQSSPANAS 716
              + + +S+   K+L ++I LPL G  L LS + + L F S+R+K   +  +SS  +  
Sbjct: 660 PSSTEQGSSIKFHKRLFLVISLPLFGAFLILSFLGV-LFFQSKRSKEALEAEKSSQESEE 718

Query: 717 GFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771
             L T + +GK  +D+II AT+ F++ YCIGKG  GS+YKAKL S   +AVKK +
Sbjct: 719 ILLIT-SFDGKSMHDEIIEATDSFNDIYCIGKGGCGSVYKAKLSSGSTVAVKKLH 772

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/805 (48%), Positives = 504/805 (62%), Gaps = 76/805 (9%)

Query: 5   VSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNAT---------KKNLCAWSGIYCN 55
           VSS S EE +ALLKWK +L ++   LL  W+L P N T          +  C W GI C 
Sbjct: 27  VSSHSNEETQALLKWKATL-LNQNLLL--WSLHPNNITNSSAQPGTATRTPCKWFGISCK 83

Query: 56  HDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
               V+ INLT   L GTL +FSFSSFP+L + ++  N+L G IPPQI  L KL+YLDLS
Sbjct: 84  AGS-VIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLS 142

Query: 116 ANKLSGKIPP------------------------EIGQLSFLSELSLYSNCLNGSIPQSL 151
            N+ SG+IP                         EIGQL  L +LSLY+N L GSIP SL
Sbjct: 143 TNQFSGRIPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCDLSLYTNKLEGSIPASL 202

Query: 152 GNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLF 211
           GNLS  + L L  N LSG IPP +GNL  L  L L+ N L G +P  LGNL +L  L L+
Sbjct: 203 GNLSNLTNLYLDENKLSGLIPPEMGNLTKLVELCLNANNLTGPIPSTLGNLKSLTLLRLY 262

Query: 212 NNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI 271
           NN LSG IP+ +G LK L NL++S N+LSG IP S+G++  L+SL L+ N+LSG IP+E+
Sbjct: 263 NNQLSGPIPTEIGNLKHLRNLSLSSNYLSGPIPMSLGDLSGLKSLQLFDNQLSGPIPQEM 322

Query: 272 GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELS 331
           GNLRSL +L++S N+LNG IP+S+GN  NL ILYL  N+LS SIP EIG L  L +LE+ 
Sbjct: 323 GNLRSLVDLEISQNQLNGSIPTSLGNLINLEILYLRDNKLSSSIPPEIGKLHKLVELEID 382

Query: 332 MNNLTGVIPSSI---GNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIP 388
            N L+G +P  I   G+L N  +                             N+  GPIP
Sbjct: 383 TNQLSGFLPEGICQGGSLENFTVFD---------------------------NFLIGPIP 415

Query: 389 KNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGT 448
           ++ KN  +L R R+ +N L+GNISEAF G  P L  ++LS+N F+G++S +WGR  +L  
Sbjct: 416 ESLKNCPSLARARLQRNQLTGNISEAF-GVCPNLYHINLSNNKFYGELSQNWGRCHKLQW 474

Query: 449 LDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSL 508
           LD + NNITGSIP + G S++L VLNLSSNH+ G+IP +LG +SSL KLILN N+L G++
Sbjct: 475 LDIAGNNITGSIPADFGISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKLILNDNRLSGNI 534

Query: 509 PPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLS 568
           PPE+G+L +L  LDLS NRL+ +IP  LGN L ++YLNLSNN+ SH IP Q  KL     
Sbjct: 535 PPELGSLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKLSHGIPVQMGKLSHLSL 594

Query: 569 ELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGP 628
              LS N L GEIPSQI  ++SL KLNLS+N LSG IP  FEDMHGL  +DISYN LQG 
Sbjct: 595 LD-LSHNLLTGEIPSQIQGLQSLEKLNLSHNNLSGIIPKAFEDMHGLWQVDISYNDLQGS 653

Query: 629 VPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVKKLIIMILLPLLGVLAL- 687
           +P S+AF++   E LQGN+GLCG  KGL  C+  RS+ + +  K + +I+  LLG L + 
Sbjct: 654 IPNSEAFQNVTIEVLQGNKGLCGSVKGLQPCEN-RSATKGT-HKAVFIIIFSLLGALLIL 711

Query: 688 -SIISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCI 746
            + I I L+   RR   + + G     N     S  T +G+ TY+ II AT DFD  YCI
Sbjct: 712 SAFIGISLISQGRRNAKMEKAGDVQTEN---LFSISTFDGRTTYEAIIEATKDFDPMYCI 768

Query: 747 GKGAQGSLYKAKLQSEDLIAVKKFN 771
           G+G  GS+YKA+L S +++AVKK +
Sbjct: 769 GEGGHGSVYKAELPSGNIVAVKKLH 793

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 387/805 (48%), Positives = 502/805 (62%), Gaps = 76/805 (9%)

Query: 5   VSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNAT---------KKNLCAWSGIYCN 55
           VSS S EE +ALLKWK +L ++   LL  W+L P N T          +  C W GI C 
Sbjct: 27  VSSHSNEETQALLKWKATL-LNQNLLL--WSLHPNNITNSSAQPGTATRTPCKWFGISCK 83

Query: 56  HDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
               V+ INLT   L GTL +FSFSSFP+L + ++  N+L G IPPQI  L KL+YLDLS
Sbjct: 84  AGS-VIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLS 142

Query: 116 ANKLSGKIPP------------------------EIGQLSFLSELSLYSNCLNGSIPQSL 151
            N+ SG+IP                         EIGQL  L +LSLY+N L G+IP SL
Sbjct: 143 TNQFSGRIPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCDLSLYTNKLEGTIPASL 202

Query: 152 GNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLF 211
           GNLS  + L L  N LSG IPP +GNL  L  L L+ N L G +P  LGNL +L  L L+
Sbjct: 203 GNLSNLTNLYLDENKLSGLIPPEMGNLTKLVELCLNANNLTGPIPSTLGNLKSLTLLRLY 262

Query: 212 NNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI 271
           NN LSG IP+ +G LK L NL++S N+LSG IP S+G++  L+SL L+ N+LSG IP+E+
Sbjct: 263 NNQLSGPIPTEIGNLKHLRNLSLSSNYLSGPIPMSLGDLSGLKSLQLFDNQLSGPIPQEM 322

Query: 272 GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELS 331
           GNLRSL +L++S N+LNG IP+ +GN  NL ILYL  N+LS SIP EIG L  L +LE+ 
Sbjct: 323 GNLRSLVDLEISQNQLNGSIPTLLGNLINLEILYLRDNKLSSSIPPEIGKLHKLVELEID 382

Query: 332 MNNLTGVIPSSI---GNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIP 388
            N L+G +P  I   G+L N  +                             N+  GPIP
Sbjct: 383 TNQLSGFLPEGICQGGSLENFTVFD---------------------------NFLIGPIP 415

Query: 389 KNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGT 448
           ++ KN  +L R R+  N L+GNISEAF G  P L  ++LS+N F+G++S +WGR  +L  
Sbjct: 416 ESLKNCPSLARARLQGNQLTGNISEAF-GVCPNLYHINLSNNKFYGELSQNWGRCHKLQW 474

Query: 449 LDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSL 508
           LD + NNITGSIP + G S++L VLNLSSNH+ G+IP +LG +SSL KLILN N+L G++
Sbjct: 475 LDIAGNNITGSIPADFGISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKLILNDNRLSGNI 534

Query: 509 PPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLS 568
           PPE+G+L +L  LDLS NRL+ +IP  LGN L ++YLNLSNN+ SH IP Q  KL     
Sbjct: 535 PPELGSLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKLSHGIPVQMGKLSHLSL 594

Query: 569 ELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGP 628
              LS N L GEIPSQI  ++SL KLNLS+N LSG IP  FEDMHGL  +DISYN LQG 
Sbjct: 595 LD-LSHNLLTGEIPSQIQGLQSLEKLNLSHNNLSGIIPKAFEDMHGLWQVDISYNDLQGS 653

Query: 629 VPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVKKLIIMILLPLLGVLAL- 687
           +P S+AF++   E LQGN+GLCG  KGL  C+  RS+ + +  K + +I+  LLG L + 
Sbjct: 654 IPNSEAFQNVTIEVLQGNKGLCGSVKGLQPCEN-RSATKGT-HKAVFIIIFSLLGALLIL 711

Query: 688 -SIISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCI 746
            + I I L+   RR   + + G     N     S  T +G+ TY+ II AT DFD  YCI
Sbjct: 712 SAFIGISLISQGRRNAKMEKAGDVQTEN---LFSISTFDGRTTYEAIIEATKDFDPMYCI 768

Query: 747 GKGAQGSLYKAKLQSEDLIAVKKFN 771
           G+G  GS+YKA+L S +++AVKK +
Sbjct: 769 GEGGHGSVYKAELPSGNIVAVKKLH 793

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772402|emb|CAN73988.1| hypothetical protein VITISV_022117 [Vitis vinifera]

 Score =  630 bits (1624), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 370/773 (47%), Positives = 485/773 (62%), Gaps = 47/773 (6%)

Query: 5   VSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNL---CAWSGIYCNHDERVV 61
           VSS S EE +ALLKWK SLQ H  S L SW L P N+T  +     A S   C       
Sbjct: 27  VSSYSNEETQALLKWKASLQNHDHSSLLSWDLYPNNSTNSSTHLGTATSPCKC------- 79

Query: 62  GINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG 121
                  +L+G +         +L +L+L  N+  G IP +I  L  L+ L L  N+L+G
Sbjct: 80  -----MNNLSGPIPP-QIGLLSELKYLDLSINQFSGGIPSEIGLLTNLEVLHLVQNQLNG 133

Query: 122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL 181
            IP EIGQL+ L EL+LY+N L GSIP SLGNLS  + L LY N LS  IPP +GNL +L
Sbjct: 134 SIPHEIGQLASLYELALYTNQLEGSIPASLGNLSNLAYLYLYENQLSDSIPPEMGNLTNL 193

Query: 182 STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241
             +    N LIG +P   GNL  L  L+LFNN LSG IP  +G LK L  L++  N+LSG
Sbjct: 194 VEIYSDTNNLIGPIPSTFGNLKRLTVLYLFNNRLSGHIPPEIGNLKSLQGLSLYENNLSG 253

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301
            IP+S+G++  L  L LY+N+LSG IP+EIGNL+SL +L+LS N+LNG IP+S+GN  NL
Sbjct: 254 PIPASLGDLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNL 313

Query: 302 SILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG 361
             L+L  NQLSG IP+EIG L  L  LE+  N L G +P  I    +L    +  N LSG
Sbjct: 314 ETLFLRDNQLSGYIPQEIGKLHKLVVLEIDTNQLFGSLPEGICQGGSLERFTVSDNHLSG 373

Query: 362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPT 421
                                   PIPK+ KN  NL R     N L+GNISE  VG  P 
Sbjct: 374 ------------------------PIPKSLKNCKNLTRALFGGNQLTGNISEV-VGDCPN 408

Query: 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG 481
           L ++++S+N+FHG++S +WGR+P+L  L+ + NNITGSIP + G S+ L +L+LSSNH+ 
Sbjct: 409 LEYINVSYNSFHGELSHNWGRYPRLQRLEMAWNNITGSIPEDFGISTDLTLLDLSSNHLF 468

Query: 482 GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLK 541
           G+IP ++G ++SL KLILN NQL G++PPE+G+L +L  LDLS NRL+ +IP  LG+ L 
Sbjct: 469 GEIPKKMGSVTSLWKLILNDNQLSGNIPPELGSLADLGYLDLSANRLNGSIPEHLGDCLG 528

Query: 542 VHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQL 601
           ++YLNLSNN+ SH IP Q  KL   LS+LDLS N L G+IP QI  ++SL  LNLS+N L
Sbjct: 529 LNYLNLSNNKLSHGIPVQMGKLG-HLSQLDLSHNLLTGDIPPQIEGLQSLENLNLSHNNL 587

Query: 602 SGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKA 661
           SGFIP  FE+M GLS +DISYN+LQGP+P SKAFRDA  EAL+GN+GLCG+ K L  CK 
Sbjct: 588 SGFIPKAFEEMLGLSDVDISYNQLQGPIPNSKAFRDATIEALKGNKGLCGNVKRLRPCKY 647

Query: 662 FRSSRRASVK---KLIIMILLPLLGVLALSIISIGLLFNSRRTKMVSQTGQSSPANASGF 718
                +  VK   K++ +I+ PLLG L L    IG+   + R +   +  +    N    
Sbjct: 648 GSGVDQQPVKKSHKVVFIIIFPLLGALVLLFAFIGIFLIAARRERTPEIKEGEVQN--DL 705

Query: 719 LSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771
            S  T +G+  Y++II+AT DFD  YCIGKG  GS+YKA+L S +++AVKK +
Sbjct: 706 FSISTFDGRTMYEEIIKATKDFDPMYCIGKGGHGSVYKAELPSSNIVAVKKLH 758

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484864|ref|XP_002273966.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  596 bits (1537), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 365/814 (44%), Positives = 494/814 (60%), Gaps = 91/814 (11%)

Query: 8   DSTEEARALLKWKTSLQIHSRSLLPSWT-LSPVNATKKNLCAWSGIYCNHDERVVGINLT 66
           +  +EA ALL WK+SL I S+S L SW+ +SP N        W G+ C+  + V  +NL 
Sbjct: 53  EQEKEALALLTWKSSLHIRSQSFLSSWSGVSPCNN-------WFGVTCHKSKSVSSLNLE 105

Query: 67  TTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPE 126
           +  L GTL   +F S P+L+ L+L+NN                         LSG IP E
Sbjct: 106 SCGLRGTLYNLNFLSLPNLVTLDLYNN------------------------SLSGSIPQE 141

Query: 127 IGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDL 186
           IG L  L+ L L +N L+G IP S+GNL   + L L+ N LSG IP  IG L SL+ L+L
Sbjct: 142 IGLLRSLNNLKLSTNNLSGPIPPSIGNLRNLTTLYLHTNKLSGSIPQEIGLLRSLNDLEL 201

Query: 187 SLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSS 246
           S N L G +P  +GNL NL TL+L  N LSG IP  +G L+ L++L +S N+L+G IP S
Sbjct: 202 SANNLSGPIPPSIGNLRNLTTLYLHTNKLSGSIPQEIGLLRSLNDLELSTNNLNGPIPPS 261

Query: 247 IGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYL 306
           IGN+RNL +L+L++N+LSGSIPKEIG LRSL++L+LS N LNG IP SIG   NL+ LYL
Sbjct: 262 IGNLRNLTTLYLHTNKLSGSIPKEIGMLRSLNDLELSTNNLNGPIPPSIGKLRNLTTLYL 321

Query: 307 YSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQA 366
           ++N+LSGSIP EIG L+ LF+L LS NNL+G IP  IGNLRNL  LYL  N  SGSIP+ 
Sbjct: 322 HNNKLSGSIPLEIGLLRSLFNLSLSTNNLSGPIPPFIGNLRNLTKLYLDNNRFSGSIPRE 381

Query: 367 IG------------------------NLVELVSLLLGF---------------------- 380
           IG                        NL+ L SL L                        
Sbjct: 382 IGLLRSLHDLALATNKLSGPIPQEIDNLIHLKSLHLEENNFTGHLPQQMCLGGALENFTA 441

Query: 381 --NYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS 438
             N+F GPIP + +N T+L RVR+ +N L GNI+E F G YP L+F+DLS NN +G++S 
Sbjct: 442 MGNHFTGPIPMSLRNCTSLFRVRLERNQLEGNITEVF-GVYPNLNFMDLSSNNLYGELSH 500

Query: 439 DWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLI 498
            WG+   L +L+ S NN++G IPP++G + +L  L+LSSNH+ GKIP ELG+L+S+  L+
Sbjct: 501 KWGQCGSLTSLNISHNNLSGIIPPQLGEAIQLHRLDLSSNHLLGKIPRELGKLTSMFHLV 560

Query: 499 LNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPT 558
           L+ NQL G++P E+G L  LE L L+ N LS +IP  LG L K+ +LNLS N+F   IP 
Sbjct: 561 LSNNQLSGNIPLEVGNLFNLEHLSLTSNNLSGSIPKQLGMLSKLFFLNLSKNKFGESIPD 620

Query: 559 QFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSI 618
           +   +   L  LDLSQN L G+IP Q+  ++ L  LNLS+N+LSG IP+ FEDM  L+S+
Sbjct: 621 EIGNMH-SLQNLDLSQNMLNGKIPQQLGELQRLETLNLSHNELSGSIPSTFEDMLSLTSV 679

Query: 619 DISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVKKLIIMIL 678
           DIS N+L+GP+P  KAF++AP EA   N GLCG+  GL  C  F   +    K+ +I+I+
Sbjct: 680 DISSNQLEGPLPDIKAFQEAPFEAFMSNGGLCGNATGLKPCIPFTQKKN---KRSMILII 736

Query: 679 LPLLGVLALSI-ISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRAT 737
              + +L +S+ I   L + +R  K     G+SS        +    +G I Y  II  T
Sbjct: 737 SSTVFLLCISMGIYFTLYWRARNRK-----GKSSETPCEDLFAIWDHDGGILYQDIIEVT 791

Query: 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771
            +F+ +YCIG G QG++YKA+L +  ++AVKK +
Sbjct: 792 EEFNSKYCIGSGGQGTVYKAELPTGRVVAVKKLH 825

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846642|ref|XP_002891202.1| hypothetical protein ARALYDRAFT_891227 [Arabidopsis lyrata subsp. lyrata] gi|297337044|gb|EFH67461.1| hypothetical protein ARALYDRAFT_891227 [Arabidopsis lyrata subsp. lyrata]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 338/769 (43%), Positives = 478/769 (62%), Gaps = 36/769 (4%)

Query: 12  EARALLKWKTSLQIHSRS-LLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSL 70
           EA ALLKWK++     RS  L SW       T  +  +W G+ CN    +  +NLT  ++
Sbjct: 33  EANALLKWKSTFTNQKRSSKLSSWVNDANTNTSFSCTSWYGVSCNSRGSIKKLNLTGNAI 92

Query: 71  NGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQL 130
            GT  +F FSS P+L +++   N   G IPPQ   LFKL Y DLS N L+ +IPPE+G L
Sbjct: 93  EGTFQDFPFSSLPNLAYIDFSMNRFSGTIPPQFGNLFKLIYFDLSTNHLTREIPPELGNL 152

Query: 131 SFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQ 190
             L  LSL +N L GSIP S+G L   ++L LY N L+G IPP +GN+  +  L+LS N+
Sbjct: 153 QNLKGLSLSNNKLAGSIPSSIGKLKNLTVLYLYKNYLTGVIPPDLGNMEYMIDLELSHNK 212

Query: 191 LIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNV 250
           L GS+P  LGNL NL  L+L +N L+G IP  LG ++ + +L +S N L+G+IPSS+GN+
Sbjct: 213 LTGSIPSSLGNLKNLTVLYLHHNYLTGVIPPELGNMESMISLALSENKLTGSIPSSLGNL 272

Query: 251 RNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQ 310
           +NL  L+L+ N ++G IP E+GN+ S+ +L+LS N L G IPSS GN   L  LYL  N 
Sbjct: 273 KNLTVLYLHQNYITGVIPPELGNMESMIDLELSQNNLTGSIPSSFGNFTKLKSLYLSYNH 332

Query: 311 LSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNL 370
           LSG+IP  + N   L +L+L++NN +G +P +I     L+ + LY N L           
Sbjct: 333 LSGAIPPGVANSSELTELQLAINNFSGFLPKNICKGGKLQFIALYDNHL----------- 381

Query: 371 VELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHN 430
                        +GPIPK+ ++  +L+R +   N   GNISEAF G YP L+F+DLSHN
Sbjct: 382 -------------KGPIPKSLRDCKSLIRAKFVGNKFVGNISEAF-GVYPDLNFIDLSHN 427

Query: 431 NFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGR 490
            F+G+ISS+W + P+LG L  S NNITG+IPPEI N  +L  L+LS+N++ G++P  +G 
Sbjct: 428 KFNGEISSNWQKSPKLGALIMSNNNITGAIPPEIWNMKQLGELDLSANNLSGELPEAIGN 487

Query: 491 LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
           L++L++L LN NQL G +P  I  LT LE LDLS NR S+ IP +  + LK+H +NLS N
Sbjct: 488 LTNLSRLRLNGNQLSGRVPAGISFLTNLESLDLSSNRFSSQIPQTFDSFLKLHEMNLSRN 547

Query: 551 EFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFE 610
            F  +IP    KL  QL+ LDLS N L+GEIPSQ+ +++SL KLNLS+N LSGFIP  FE
Sbjct: 548 NFDGRIPG-LTKLT-QLTHLDLSHNQLDGEIPSQLSSLQSLDKLNLSHNNLSGFIPTTFE 605

Query: 611 DMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGD--DKGLSSCKAFRSSRRA 668
            M  L+ IDIS N+L+GP+P + AF++A ++AL+GNRGLC +   + L SC       + 
Sbjct: 606 SMKALTFIDISNNKLEGPLPDNPAFQNATSDALEGNRGLCSNIPKQRLKSCPITSGGFQK 665

Query: 669 SVK--KLIIMILLPLLGVLA-LSIISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTLE 725
             K   L++ IL+P+LG L  LSI +    +  R+ K     G+++ +     +S  +++
Sbjct: 666 PKKNGNLLVWILVPILGALVILSICAGAFTYYIRKRK--PHNGRNTDSETGENMSIFSVD 723

Query: 726 GKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL 774
           GK  Y  II +TN+FD+ Y IG G    +YKA L  + ++AVK+ +  +
Sbjct: 724 GKFKYQDIIESTNEFDQRYLIGSGGYSKVYKANL-PDAIVAVKRLHDTI 771

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511602|ref|NP_849538.2| Leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|281185491|sp|Q8VZG8.3|Y4885_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At4g08850; Flags: Precursor gi|18086327|gb|AAL57627.1| AT4g08850/T32A17_160 [Arabidopsis thaliana] gi|224589610|gb|ACN59338.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332657282|gb|AEE82682.1| Leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 339/771 (43%), Positives = 483/771 (62%), Gaps = 16/771 (2%)

Query: 7   SDSTEEARALLKWKTSLQIH-SRSLLPSWTLSPVNATKKNLC-AWSGIYCNHDERVVGIN 64
           S + EEA ALLKWK++     S S L SW    VN    + C +W G+ C+    ++ +N
Sbjct: 45  SATVEEANALLKWKSTFTNQTSSSKLSSW----VNPNTSSFCTSWYGVACSLGS-IIRLN 99

Query: 65  LTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP 124
           LT T + GT ++F FSS P+L F++L  N   G I P   +  KL+Y DLS N+L G+IP
Sbjct: 100 LTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIP 159

Query: 125 PEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTL 184
           PE+G LS L  L L  N LNGSIP  +G L+K + +++Y+N L+G IP   GNL  L  L
Sbjct: 160 PELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNL 219

Query: 185 DLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP 244
            L +N L GS+P  +GNL NL  L L  N+L+G IPS+ G LK ++ LNM  N LSG IP
Sbjct: 220 YLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIP 279

Query: 245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSIL 304
             IGN+  L +L L++N+L+G IP  +GN+++L+ L L +N+LNG IP  +G   ++  L
Sbjct: 280 PEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDL 339

Query: 305 YLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIP 364
            +  N+L+G +P   G L  L  L L  N L+G IP  I N   L +L L  N  +G +P
Sbjct: 340 EISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLP 399

Query: 365 QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSF 424
             I    +L +L L  N+F GP+PK+ ++  +L+RVR   N+ SG+ISEAF G YPTL+F
Sbjct: 400 DTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAF-GVYPTLNF 458

Query: 425 LDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKI 484
           +DLS+NNFHGQ+S++W +  +L     S N+ITG+IPPEI N ++L  L+LSSN I G++
Sbjct: 459 IDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGEL 518

Query: 485 PMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHY 544
           P  +  ++ ++KL LN N+L G +P  I  LT LE LDLS NR S+ IP +L NL +++Y
Sbjct: 519 PESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYY 578

Query: 545 LNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGF 604
           +NLS N+    IP    KL  QL  LDLS N L+GEI SQ  ++++L +L+LS+N LSG 
Sbjct: 579 MNLSRNDLDQTIPEGLTKLS-QLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQ 637

Query: 605 IPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGD---DKGLSSCKA 661
           IP  F+DM  L+ +D+S+N LQGP+P + AFR+AP +A +GN+ LCG     +GL  C  
Sbjct: 638 IPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSI 697

Query: 662 FRSSRRASVKKLIIMILLPLLGVLALSIISIGLLFNSR-RTKMVSQTGQSSPANASGFLS 720
             S +    + LII IL+P++G + +  +  G+    R RTK + +   S     +  LS
Sbjct: 698 TSSKKSHKDRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDSESGGET--LS 755

Query: 721 TLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771
             + +GK+ Y +II+AT +FD +Y IG G  G +YKAKL +  ++AVKK N
Sbjct: 756 IFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLN 805

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	775
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.979	0.726	0.371	6.3e-124
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.865	0.599	0.351	5.7e-107
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.859	0.583	0.316	5.4e-80
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.859	0.586	0.308	2.4e-79
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.962	0.684	0.293	5.8e-76
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.730	0.503	0.312	9.1e-76
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.864	0.608	0.308	9.9e-75
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.860	0.532	0.303	4.2e-71
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.863	0.607	0.303	2.3e-73
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.849	0.604	0.308	2.5e-73

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
 Identities = 288/776 (37%), Positives = 402/776 (51%)

Query:     2 SLPVSSDSTEEARALLKWKTSLQIH-SRSLLPSWTLSPVNATKKNLC-AWSGIYCNHDER 59
             S  VS+ + EEA ALLKWK++     S S L SW    VN    + C +W G+ C+    
Sbjct:    41 SFAVSA-TVEEANALLKWKSTFTNQTSSSKLSSW----VNPNTSSFCTSWYGVACSLGS- 94

Query:    60 VVGINLTTTSLNGTXXXXXXXXXXXXXXXXXXXXXXXGIIPPQISQLFKLQYLDLSANKL 119
             ++ +NLT T + GT                       G I P   +  KL+Y DLS N+L
Sbjct:    95 IIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQL 154

Query:   120 SGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXXXXXXXXGYIPPVIGNLI 179
              G+IPPE+G LS L  L L  N LNGSIP  +G                G IP   GNL 
Sbjct:   155 VGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLT 214

Query:   180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239
              L  L L +N L GS+P  +GNL NL  L L  N+L+G IPS+ G LK ++ LNM  N L
Sbjct:   215 KLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQL 274

Query:   240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPXXXXXXX 299
             SG IP  IGN+  L +L L++N+L+G IP  +GN+++L+ L L +N+LNG IP       
Sbjct:   275 SGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEME 334

Query:   300 XXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXEL 359
                          G +P   G L  L  L L  N L+G IP  I                
Sbjct:   335 SMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNF 394

Query:   360 SGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTY 419
             +G +P  I    +L +L L  N+F GP+PK+ ++  +L+RVR   N+ SG+ISEAF G Y
Sbjct:   395 TGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAF-GVY 453

Query:   420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNH 479
             PTL+F+DLS+NNFHGQ+S++W +  +L     S N+ITG+IPPEI N ++L  L+LSSN 
Sbjct:   454 PTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNR 513

Query:   480 IGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXXXXXXXXXXXNRLSNAIPGSLGNL 539
             I G++P  +                 G                   NR S+ IP +L NL
Sbjct:   514 ITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNL 573

Query:   540 LKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNFLEGEIPSQICNMESLVKLNLSYN 599
              +++Y+NLS N+    IP    K            N L+GEI SQ  ++++L +L+LS+N
Sbjct:   574 PRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSY-NQLDGEISSQFRSLQNLERLDLSHN 632

Query:   600 QLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGD---DKGL 656
              LSG IP  F+DM  L+ +D+S+N LQGP+P + AFR+AP +A +GN+ LCG     +GL
Sbjct:   633 NLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGL 692

Query:   657 SSCKAFRSSRRASVKKXXXXXXXXXXXXXXXXXXSIGLLFNSR-RTKMVSQTGQSSPANA 715
               C    S +    +                     G+    R RTK + +   S     
Sbjct:   693 KPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDSESGGE 752

Query:   716 SGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771
             +  LS  + +GK+ Y +II+AT +FD +Y IG G  G +YKAKL +  ++AVKK N
Sbjct:   753 T--LSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLN 805

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 239/680 (35%), Positives = 358/680 (52%)

Query:    97 GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXX 156
             G+IPP++  +  +  L LS NKL+G IP  +G L  L  L LY N L G IP  +G    
Sbjct:   212 GVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMES 271

Query:   157 XXXXXXXXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS 216
                         G IP  +GNL +L+ L L  N L G +P  LGN+ +++ L L NN L+
Sbjct:   272 MTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLT 331

Query:   217 GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRS 276
             G IPS+LG LK L+ L +  N+L+G IP  +GN+ ++  L L +N+L+GSIP   GNL++
Sbjct:   332 GSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKN 391

Query:   277 LSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLT 336
             L+ L L +N L GVIP                    GS+P   GN   L  L L +N+L+
Sbjct:   392 LTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLS 451

Query:   337 GVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
             G IP  +                +G  P+ +    +L ++ L +N+  GPIPK+ ++  +
Sbjct:   452 GAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKS 511

Query:   397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
             L+R R   N  +G+I EAF G YP L+F+D SHN FHG+ISS+W + P+LG L  S NNI
Sbjct:   512 LIRARFLGNKFTGDIFEAF-GIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNI 570

Query:   457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXX 516
             TG+IP EI N ++L  L+LS+N++ G++P  +G                G          
Sbjct:   571 TGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLT 630

Query:   517 XXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNF 576
                      N  S+ IP +  + LK+H +NLS N+F   IP +  K            N 
Sbjct:   631 NLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIP-RLSKLTQLTQLDLSH-NQ 688

Query:   577 LEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFR 636
             L+GEIPSQ+ +++SL KL+LS+N LSG IP  FE M  L+++DIS N+L+GP+P +  FR
Sbjct:   689 LDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFR 748

Query:   637 DAPAEALQGNRGLCGD--DKGLSSCKAFRSSRRASVKKXXXXXXXXXXXXXXXXXXSIGL 694
              A A+AL+ N GLC +   + L  C+  +  ++                       +   
Sbjct:   749 KATADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWILVPILGVLVILSICANT-F 807

Query:   695 LFNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSL 754
              +  R+ K+  Q G+++       +S  +++GK  Y  II +TN+FD  + IG G    +
Sbjct:   808 TYCIRKRKL--QNGRNTDPETGENMSIFSVDGKFKYQDIIESTNEFDPTHLIGTGGYSKV 865

Query:   755 YKAKLQSEDLIAVKKFNSQL 774
             Y+A LQ + +IAVK+ +  +
Sbjct:   866 YRANLQ-DTIIAVKRLHDTI 884

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 5.4e-80, P = 5.4e-80
 Identities = 215/680 (31%), Positives = 315/680 (46%)

Query:    97 GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXX 156
             G IP  +S+L  L+ L L++N+L+GKIPP+I + S L  L L+ N L GSIP  LG    
Sbjct:   143 GDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSG 202

Query:   157 XXXXXXXXXXX-XGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSL 215
                          G IP  IG+  +L+ L L+   + G++P  LG L  L TL ++   +
Sbjct:   203 LEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMI 262

Query:   216 SGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLR 275
             SG IPS LG    L +L +  N LSG+IP  IG +  L  LFL+ N L G IP+EIGN  
Sbjct:   263 SGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCS 322

Query:   276 SLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNL 335
             +L  +DLS+N L+G IP                    GSIP  I N   L  L+L  N +
Sbjct:   323 NLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQI 382

Query:   336 TGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395
             +G+IPS +G             +L GSIP  + +  +L +L L  N   G IP     L 
Sbjct:   383 SGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLR 442

Query:   396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
             NL ++ +  N+LSG I +  +G   +L  L L  N   G+I S  G   ++  LDFS N 
Sbjct:   443 NLTKLLLISNSLSGFIPQE-IGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNR 501

Query:   456 ITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXX 515
             + G +P EIG+ S+LQ+++LS+N + G +P  +                 G         
Sbjct:   502 LHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRL 561

Query:   516 XXXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXN 575
                       N  S +IP SLG    +  L+L +NE S +IP++               N
Sbjct:   562 VSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSN 621

Query:   576 FLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAF 635
              L G+IPS+I ++  L  L+LS+N L G +     ++  L S++ISYN   G +P +K F
Sbjct:   622 RLTGKIPSKIASLNKLSILDLSHNMLEGDLAP-LANIENLVSLNISYNSFSGYLPDNKLF 680

Query:   636 RDAPAEALQGNRGLCGDDKGLSSC-KAFRSSRRASVKKXXXXXXXXXXXXXXXXXXSIGL 694
             R    + L+GN+ LC   +   SC   +R                           ++ L
Sbjct:   681 RQLSPQDLEGNKKLCSSTQ--DSCFLTYRKGNGLGDDGDASRTRKLRLTLALLITLTVVL 738

Query:   695 LFNS-----RRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKG 749
             +        R  + +     S       +  T   +   + DQIIR      E   IGKG
Sbjct:   739 MILGAVAVIRARRNIDNERDSELGETYKWQFTPFQKLNFSVDQIIRC---LVEPNVIGKG 795

Query:   750 AQGSLYKAKLQSEDLIAVKK 769
               G +Y+A + + ++IAVKK
Sbjct:   796 CSGVVYRADVDNGEVIAVKK 815

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 2.4e-79, P = 2.4e-79
 Identities = 209/678 (30%), Positives = 311/678 (45%)

Query:    97 GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXX 156
             G IP  + +L  LQ L L++N L+GKIPPE+G    L  L ++ N L+ ++P  LG    
Sbjct:   144 GEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKIST 203

Query:   157 XXXXXXXXXXX-XGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSL 215
                          G IP  IGN  +L  L L+  ++ GS+P  LG L+ L +L +++  L
Sbjct:   204 LESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTML 263

Query:   216 SGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLR 275
             SG IP  LG    L NL +  N LSG +P  +G ++NL  + L+ N L G IP+EIG ++
Sbjct:   264 SGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMK 323

Query:   276 SLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNL 335
             SL+ +DLS+N  +G IP                    GSIP  + N   L   ++  N +
Sbjct:   324 SLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQI 383

Query:   336 TGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395
             +G+IP  IG             +L G+IP  +     L +L L  NY  G +P     L 
Sbjct:   384 SGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLR 443

Query:   396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
             NL ++ +  N +SG I    +G   +L  L L +N   G+I    G    L  LD S NN
Sbjct:   444 NLTKLLLISNAISGVIPLE-IGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENN 502

Query:   456 ITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXX 515
             ++G +P EI N  +LQ+LNLS+N + G +P+ L                 G         
Sbjct:   503 LSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHL 562

Query:   516 XXXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXN 575
                       N  +  IP SLG+   +  L+LS+N  S  IP +               N
Sbjct:   563 ISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLSWN 622

Query:   576 FLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAF 635
              L+G IP +I  +  L  L++S+N LSG + +    +  L S++IS+NR  G +P SK F
Sbjct:   623 SLDGFIPERISALNRLSVLDISHNMLSGDL-SALSGLENLVSLNISHNRFSGYLPDSKVF 681

Query:   636 RDAPAEALQGNRGLCGDDKGLSSCKAFRSSR---RASVKKXXXXXXXXXXXXXXXXXXSI 692
             R      ++GN GLC   KG  SC    SS+   +  V                     +
Sbjct:   682 RQLIGAEMEGNNGLCS--KGFRSCFVSNSSQLTTQRGVHSHRLRIAIGLLISVTAVLAVL 739

Query:   693 GLLFNSRRTKMVSQTGQSSPA-NASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQ 751
             G+L   R  +M+     S    N   +  T   +   T + +++      E   IGKG  
Sbjct:   740 GVLAVIRAKQMIRDDNDSETGENLWTWQFTPFQKLNFTVEHVLKC---LVEGNVIGKGCS 796

Query:   752 GSLYKAKLQSEDLIAVKK 769
             G +YKA++ + ++IAVKK
Sbjct:   797 GIVYKAEMPNREVIAVKK 814

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 5.8e-76, P = 5.8e-76
 Identities = 234/798 (29%), Positives = 346/798 (43%)

Query:     1 FSLPVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERV 60
             FS+P  S   E+  ALL WK+ L I S   L SW      A++ N C W GI CN   +V
Sbjct:    21 FSIPCFSID-EQGLALLSWKSQLNI-SGDALSSW-----KASESNPCQWVGIKCNERGQV 73

Query:    61 VGINLTTTSLNGTXXXXXXXXXXXXXXXXXXXXXXXGIIPPQISQLFKLQYLDLSANKLS 120
               I L      G                        G IP ++  L +L+ LDL+ N LS
Sbjct:    74 SEIQLQVMDFQGPLPATNLRQIKSLTLLSLTSVNLTGSIPKELGDLSELEVLDLADNSLS 133

Query:   121 GKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXXXXXXXXGYIPPVIGNLIS 180
             G+IP +I +L  L  LSL +N L G IP  LG                G IP  IG L +
Sbjct:   134 GEIPVDIFKLKKLKILSLNTNNLEGVIPSELGNLVNLIELTLFDNKLAGEIPRTIGELKN 193

Query:   181 LSTLDLSLNQ-LIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239
             L       N+ L G +P+ +GN  +LVTL L   SLSG +P+++G LK +  + +  + L
Sbjct:   194 LEIFRAGGNKNLRGELPWEIGNCESLVTLGLAETSLSGRLPASIGNLKKVQTIALYTSLL 253

Query:   240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPXXXXXXX 299
             SG IP  IGN   L++L+LY N +SGSIP  +G L+ L +L L  N L G IP       
Sbjct:   254 SGPIPDEIGNCTELQNLYLYQNSISGSIPVSMGRLKKLQSLLLWQNNLVGKIPTELGTCP 313

Query:   300 XXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXEL 359
                          G+IP+  GNL  L +L+LS+N L+G IP  +              ++
Sbjct:   314 ELFLVDLSENLLTGNIPRSFGNLPNLQELQLSVNQLSGTIPEELANCTKLTHLEIDNNQI 373

Query:   360 SGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTY 419
             SG IP  IG L  L       N   G IP++      L  + ++ NNLSG+I    +   
Sbjct:   374 SGEIPPLIGKLTSLTMFFAWQNQLTGIIPESLSQCQELQAIDLSYNNLSGSIPNG-IFEI 432

Query:   420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNH 479
               L+ L L  N   G I  D G    L  L  + N + G+IP EIGN   L  +++S N 
Sbjct:   433 RNLTKLLLLSNYLSGFIPPDIGNCTNLYRLRLNGNRLAGNIPAEIGNLKNLNFIDISENR 492

Query:   480 IGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXXXXXXXXXXXNRLSNAIPGSLGNL 539
             + G IP E+                 G                   N L+ ++P  +G+L
Sbjct:   493 LIGNIPPEISGCTSLEFVDLHSNGLTGGLPGTLPKSLQFIDLSD--NSLTGSLPTGIGSL 550

Query:   540 LKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNFLEGEIPSQICNMESL-VKLNLSY 598
              ++  LNL+ N FS +IP +                F  GEIP+++  + SL + LNLS 
Sbjct:   551 TELTKLNLAKNRFSGEIPREISSCRSLQLLNLGDNGFT-GEIPNELGRIPSLAISLNLSC 609

Query:   599 NQLSGFIPNCFEDMHGLSSIDISYNRL-----------------------QGPVPFSKAF 635
             N  +G IP+ F  +  L ++D+S+N+L                        G +P +  F
Sbjct:   610 NHFTGEIPSRFSSLTNLGTLDVSHNKLAGNLNVLADLQNLVSLNISFNEFSGELPNTLFF 669

Query:   636 RDAPAEALQGNRGLCGDDKGLSSCKAFRSSRRASVKKXXXXXXXXXXXXXXXXXXSIGLL 695
             R  P   L+ N+GL    +  +     ++  R++VK                   S+ L+
Sbjct:   670 RKLPLSVLESNKGLFISTRPENG---IQTRHRSAVK----------VTMSILVAASVVLV 716

Query:   696 FNSRRTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLY 755
               +  T + +Q           +  TL  +   + D I++   +      IG G+ G +Y
Sbjct:   717 LMAVYTLVKAQRITGKQEELDSWEVTLYQKLDFSIDDIVK---NLTSANVIGTGSSGVVY 773

Query:   756 KAKLQSEDLIAVKKFNSQ 773
             +  + S + +AVKK  S+
Sbjct:   774 RVTIPSGETLAVKKMWSK 791

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 9.1e-76, Sum P(2) = 9.1e-76
 Identities = 178/569 (31%), Positives = 254/569 (44%)

Query:    97 GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXX 156
             G +P +I  L+ L+ L    N L+G +P  +G L+ L+      N  +G+IP  +G    
Sbjct:   171 GPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLN 230

Query:   157 XXXXXXXXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS 216
                         G +P  IG L+ L  + L  N+  G +P  +GNLT+L TL L+ NSL 
Sbjct:   231 LKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLV 290

Query:   217 GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRS 276
             G IPS +G +K L  L +  N L+G IP  +G +  +  +    N LSG IP E+  +  
Sbjct:   291 GPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISE 350

Query:   277 LSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLT 336
             L  L L  N+L G+IP                    G IP    NL  +  L+L  N+L+
Sbjct:   351 LRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLS 410

Query:   337 GVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
             GVIP  +G             +LSG IP  I     L+ L LG N   G IP       +
Sbjct:   411 GVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKS 470

Query:   397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
             L+++R+  N L+G            LS ++L  N F G +  + G   +L  L  + N  
Sbjct:   471 LLQLRVVGNRLTGQFPTELCKLV-NLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQF 529

Query:   457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXX 516
             + ++P EI   S L   N+SSN + G IP E+                 GS         
Sbjct:   530 SSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLH 589

Query:   517 XXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNF 576
                      NR S  IP ++GNL  +  L +  N FS  IP Q               N 
Sbjct:   590 QLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYND 649

Query:   577 LEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFR 636
               GEIP +I N+  L+ L+L+ N LSG IP  FE++  L   + SYN L G +P ++ F+
Sbjct:   650 FSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQ 709

Query:   637 DAPAEALQGNRGLCGDDKGLSSCKAFRSS 665
             +    +  GN+GLCG    L SC    SS
Sbjct:   710 NMTLTSFLGNKGLCGGH--LRSCDPSHSS 736

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 9.9e-75, P = 9.9e-75
 Identities = 212/687 (30%), Positives = 308/687 (44%)

Query:    97 GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXX 156
             G IP QI  L  LQ L + +N L+G IPP + +L  L  +    N  +G IP  +     
Sbjct:   153 GSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCES 212

Query:   157 XXXXXXXXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS 216
                         G +P  +  L +L+ L L  N+L G +P  +GN++ L  L L  N  +
Sbjct:   213 LKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFT 272

Query:   217 GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRS 276
             G IP  +GKL  +  L +  N L+G IP  IGN+ +   +    N+L+G IPKE G++ +
Sbjct:   273 GSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILN 332

Query:   277 LSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLT 336
             L  L L  N L G IP                    G+IP+E+  L  L DL+L  N L 
Sbjct:   333 LKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLE 392

Query:   337 GVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
             G IP  IG              LSG IP        L+ L LG N   G IP++ K   +
Sbjct:   393 GKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKS 452

Query:   397 LVRVRMNQNNLSGNIS-EAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
             L ++ +  N L+G++  E F      L+ L+L  N   G IS+D G+   L  L  + NN
Sbjct:   453 LTKLMLGDNQLTGSLPIELF--NLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNN 510

Query:   456 ITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXX 515
              TG IPPEIGN +K+   N+SSN + G IP ELG                G         
Sbjct:   511 FTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQL 570

Query:   516 XXXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXN 575
                       NRL+  IP S G+L ++  L L  N  S  IP +  K            N
Sbjct:   571 VYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHN 630

Query:   576 FLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAF 635
              L G IP  + N++ L  L L+ N+LSG IP    ++  L   +IS N L G VP +  F
Sbjct:   631 NLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVF 690

Query:   636 RDAPAEALQGNRGLCGDDKGLSSCKAF--RSSRRAS-----VKKXXXXXXXXXXXXXXXX 688
             +   +    GN GLC   +  S C+     S  + +      ++                
Sbjct:   691 QRMDSSNFAGNHGLCNSQR--SHCQPLVPHSDSKLNWLINGSQRQKILTITCIVIGSVFL 748

Query:   689 XXSIGLLFNSRRTK--MVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCI 746
                +GL +  +R +   V+   Q+ P     +      +G  TY  ++ AT +F E+  +
Sbjct:   749 ITFLGLCWTIKRREPAFVALEDQTKPDVMDSYY--FPKKG-FTYQGLVDATRNFSEDVVL 805

Query:   747 GKGAQGSLYKAKLQSEDLIAVKKFNSQ 773
             G+GA G++YKA++   ++IAVKK NS+
Sbjct:   806 GRGACGTVYKAEMSGGEVIAVKKLNSR 832

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 4.2e-71, P = 4.2e-71
 Identities = 207/682 (30%), Positives = 305/682 (44%)

Query:    97 GIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQSLGXXX 155
             G+I  +  ++ +L++L L+ N+LSG +P  I    + L +L L    L+G IP  +    
Sbjct:   302 GVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQ 361

Query:   156 XXXXXXXXXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSL 215
                          G IP  +  L+ L+ L L+ N L G++   + NLTNL    L++N+L
Sbjct:   362 SLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNL 421

Query:   216 SGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLR 275
              G +P  +G L  L  + +  N  SG +P  IGN   L+ +  Y N LSG IP  IG L+
Sbjct:   422 EGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLK 481

Query:   276 SLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNL 335
              L+ L L  N L G IP                    GSIP   G L  L    +  N+L
Sbjct:   482 DLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541

Query:   336 TGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395
              G +P S+              + +GSI    G+   L S  +  N F G IP      T
Sbjct:   542 QGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYL-SFDVTENGFEGDIPLELGKST 600

Query:   396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
             NL R+R+ +N  +G I   F G    LS LD+S N+  G I  + G   +L  +D + N 
Sbjct:   601 NLDRLRLGKNQFTGRIPRTF-GKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNY 659

Query:   456 ITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXX 515
             ++G IP  +G    L  L LSSN   G +P E+                 GS        
Sbjct:   660 LSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNL 719

Query:   516 XXXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXN 575
                       N+LS  +P ++G L K+  L LS N  + +IP +  +            N
Sbjct:   720 QALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYN 779

Query:   576 FLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAF 635
                G IPS I  +  L  L+LS+NQL G +P    DM  L  +++SYN L+G +   K F
Sbjct:   780 NFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQF 837

Query:   636 RDAPAEALQGNRGLCGDDKGLSSC-KAFRSSRRASVKKXXXXXXXXXXXXXXXXXXSIGL 694
                 A+A  GN GLCG    LS C +A   ++R+   K                   + +
Sbjct:   838 SRWQADAFVGNAGLCGSP--LSHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVLVII 895

Query:   695 LFNSRRTKMVSQT--GQSS-PANASGFLSTLTLEG----KITYDQIIRATNDFDEEYCIG 747
             LF  +   +  +   G S+  +N+S   + L   G     I +D I+ AT+  +EE+ IG
Sbjct:   896 LFFKQNHDLFKKVRGGNSAFSSNSSSSQAPLFSNGGAKSDIKWDDIMEATHYLNEEFMIG 955

Query:   748 KGAQGSLYKAKLQSEDLIAVKK 769
              G  G +YKA+L++ + IAVKK
Sbjct:   956 SGGSGKVYKAELKNGETIAVKK 977

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 2.3e-73, P = 2.3e-73
 Identities = 208/685 (30%), Positives = 301/685 (43%)

Query:    97 GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXX 156
             G +P +I  L  L  L   +N +SG++P  IG L  L+      N ++GS+P  +G    
Sbjct:   159 GSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCES 218

Query:   157 XXXXXXXXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS 216
                         G +P  IG L  LS + L  N+  G +P  + N T+L TL L+ N L 
Sbjct:   219 LVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLV 278

Query:   217 GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRS 276
             G IP  LG L+ L  L +  N L+G IP  IGN+     +    N L+G IP E+GN+  
Sbjct:   279 GPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEG 338

Query:   277 LSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLT 336
             L  L L  N+L G IP                    G IP     L+ LF L+L  N+L+
Sbjct:   339 LELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLS 398

Query:   337 GVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
             G IP  +G              LSG IP  +     ++ L LG N   G IP        
Sbjct:   399 GTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKT 458

Query:   397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
             LV++R+ +NNL G            ++ ++L  N F G I  + G    L  L  + N  
Sbjct:   459 LVQLRLARNNLVGRFPSNLCKQV-NVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGF 517

Query:   457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXX 516
             TG +P EIG  S+L  LN+SSN + G++P E+                 G+         
Sbjct:   518 TGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLY 577

Query:   517 XXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNF 576
                      N LS  IP +LGNL ++  L +  N F+  IP +               N 
Sbjct:   578 QLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNK 637

Query:   577 LEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFR 636
             L GEIP ++ N+  L  L L+ N LSG IP+ F ++  L   + SYN L GP+P     R
Sbjct:   638 LTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL---LR 694

Query:   637 DAPAEALQGNRGLCGDDKGLSSC---KAFRSSRRASVKKXXXXXXXXXXXXXXXXXXSIG 693
             +    +  GN GLCG    L+ C   + F  S+                        S+ 
Sbjct:   695 NISMSSFIGNEGLCGPP--LNQCIQTQPFAPSQSTGKPGGMRSSKIIAITAAVIGGVSLM 752

Query:   694 LL----FNSRR-TKMVSQTGQSS-PANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIG 747
             L+    +  RR  + V+ + Q   P+  S  +     EG  T+  ++ AT++FDE + +G
Sbjct:   753 LIALIVYLMRRPVRTVASSAQDGQPSEMSLDIYFPPKEG-FTFQDLVAATDNFDESFVVG 811

Query:   748 KGAQGSLYKAKLQSEDLIAVKKFNS 772
             +GA G++YKA L +   +AVKK  S
Sbjct:   812 RGACGTVYKAVLPAGYTLAVKKLAS 836

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 2.5e-73, P = 2.5e-73
 Identities = 209/677 (30%), Positives = 315/677 (46%)

Query:    97 GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXX 156
             G+IP  +  L +L  L +S N LSG IP  +G  S L  L+L +N LNGS+P SL     
Sbjct:   162 GLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLEN 221

Query:   157 XXXXXXXXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS 216
                         G +     N   L +LDLS N   G VP  +GN ++L +L +   +L+
Sbjct:   222 LGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNLT 281

Query:   217 GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRS 276
             G IPS++G L+ +S +++S N LSG IP  +GN  +L +L L  N+L G IP  +  L+ 
Sbjct:   282 GTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLKK 341

Query:   277 LSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLT 336
             L +L+L  N+L+G IP                    G +P E+  LK L  L L  N   
Sbjct:   342 LQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFY 401

Query:   337 GVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
             G IP S+G               +G IP  + +  +L   +LG N   G IP + +    
Sbjct:   402 GDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKT 461

Query:   397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
             L RVR+  N LSG + E F  +  +LS+++L  N+F G I    G    L T+D S N +
Sbjct:   462 LERVRLEDNKLSGVLPE-FPESL-SLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKL 519

Query:   457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXX 516
             TG IPPE+GN   L +LNLS N++ G +P +L                 GS         
Sbjct:   520 TGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWK 579

Query:   517 XXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNF 576
                      N    AIP  L  L ++  L ++ N F  KIP+                N 
Sbjct:   580 SLSTLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANV 639

Query:   577 LEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFR 636
               GEIP+ +  + +L +LN+S N+L+G + +  + +  L+ +D+SYN+  GP+P +    
Sbjct:   640 FTGEIPTTLGALINLERLNISNNKLTGPL-SVLQSLKSLNQVDVSYNQFTGPIPVNLL-- 696

Query:   637 DAPAEALQGNRGLCGDDK-GLSSC--KAFRSSRRASVKKXXXXXXXXXXXXXXXXXXSIG 693
              + +    GN  LC      +S+   K F+S +   VK                    + 
Sbjct:   697 -SNSSKFSGNPDLCIQASYSVSAIIRKEFKSCK-GQVKLSTWKIALIAAGSSLSVLALLF 754

Query:   694 LLFNSR-RTKMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQG 752
              LF    R K  ++T  ++     G LS L        ++++ AT++ D++Y IG+GA G
Sbjct:   755 ALFLVLCRCKRGTKTEDANILAEEG-LSLLL-------NKVLAATDNLDDKYIIGRGAHG 806

Query:   753 SLYKAKLQSEDLIAVKK 769
              +Y+A L S +  AVKK
Sbjct:   807 VVYRASLGSGEEYAVKK 823

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	775
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-121
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  387 bits (995), Expect = e-121
 Identities = 276/769 (35%), Positives = 397/769 (51%), Gaps = 81/769 (10%)

Query: 11  EEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSL 70
           EE   LL +K+S+        P   LS  N++  ++C W GI CN+  RVV I+L+  ++
Sbjct: 29  EELELLLSFKSSIND------PLKYLSNWNSSA-DVCLWQGITCNNSSRVVSIDLSGKNI 81

Query: 71  NGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQL-FKLQYLDLSANKLSGKIPPEIGQ 129
           +G +    F   P +  +NL NN+L G IP  I      L+YL+LS N  +G IP   G 
Sbjct: 82  SGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GS 138

Query: 130 LSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLN 189
           +  L  L L +N L+G IP  +G+ S   +L L  N L G IP  + NL SL  L L+ N
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 190 QLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGN 249
           QL+G +P  LG + +L  ++L  N+LSG IP  +G L  L++L++  N+L+G IPSS+GN
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 250 VRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSN 309
           ++NL+ LFLY N+LSG IP  I +L+ L +LDLS N L+G IP  +    NL IL+L+SN
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 310 QLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGN 369
             +G IP  + +L  L  L+L  N  +G IP ++G   NL +L L  N L+G IP+ + +
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 370 LVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSH 429
              L  L+L  N   G IPK+     +L RVR+  N+ SG +   F    P + FLD+S+
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISN 437

Query: 430 NNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELG 489
           NN  G+I+S     P L  L  + N   G +P   G S +L+ L+LS N   G +P +LG
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLG 496

Query: 490 RLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSN 549
            LS                        EL  L LSEN+LS  IP  L +  K+  L+LS+
Sbjct: 497 SLS------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 550 NEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCF 609
           N+ S +IP  F ++ + LS+LDLSQN L GEIP  + N+ESLV++N              
Sbjct: 533 NQLSGQIPASFSEMPV-LSQLDLSQNQLSGEIPKNLGNVESLVQVN-------------- 577

Query: 610 EDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDK--GLSSCKAFRSSRR 667
                     IS+N L G +P + AF    A A+ GN  LCG D   GL  CK  R +  
Sbjct: 578 ----------ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKT-- 625

Query: 668 ASVKKLIIMILLPLLGVLALSIISIGLLFNSRRTKMVSQTGQSSPANASGFLSTLTLEGK 727
                    I   L   L L++++ G +F   R +   +  +    N  G       + K
Sbjct: 626 ---PSWWFYITCTLGAFLVLALVAFGFVF--IRGRNNLELKRVE--NEDGTWELQFFDSK 678

Query: 728 ----ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDL-IAVKKFN 771
               IT + I+ +     EE  I +G +G+ YK K     +   VK+ N
Sbjct: 679 VSKSITINDILSSLK---EENVISRGKKGASYKGKSIKNGMQFVVKEIN 724

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 87.6 bits (217), Expect = 8e-18
 Identities = 61/176 (34%), Positives = 77/176 (43%), Gaps = 36/176 (20%)

Query: 6   SSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCA-----WSGIYCNHDERV 60
           S    EE  AL   K+SL +  R     W   P        C      WSG  C  D   
Sbjct: 367 SKTLLEEVSALQTLKSSLGLPLRF---GWNGDP--------CVPQQHPWSGADCQFDS-- 413

Query: 61  VGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLS 120
                  T     +D            L L N  L G IP  IS+L  LQ ++LS N + 
Sbjct: 414 -------TKGKWFIDG-----------LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR 455

Query: 121 GKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIG 176
           G IPP +G ++ L  L L  N  NGSIP+SLG L+   +L+L  NSLSG +P  +G
Sbjct: 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 87.2 bits (216), Expect = 1e-17
 Identities = 38/89 (42%), Positives = 59/89 (66%)

Query: 208 LHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI 267
           L L N  L GFIP+ + KL+ L ++N+S N + G IP S+G++ +L  L L  N  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 268 PKEIGNLRSLSNLDLSINRLNGVIPSSIG 296
           P+ +G L SL  L+L+ N L+G +P+++G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 81.4 bits (201), Expect = 6e-16
 Identities = 36/89 (40%), Positives = 53/89 (59%)

Query: 425 LDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKI 484
           L L +    G I +D  +   L +++ S N+I G+IPP +G+ + L+VL+LS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 485 PMELGRLSSLNKLILNKNQLFGSLPPEIG 513
           P  LG+L+SL  L LN N L G +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.9 bits (192), Expect = 9e-15
 Identities = 41/93 (44%), Positives = 55/93 (59%)

Query: 132 FLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL 191
           F+  L L +  L G IP  +  L     ++L  NS+ G IPP +G++ SL  LDLS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 192 IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLG 224
            GS+P  LG LT+L  L+L  NSLSG +P+ LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 2e-14
 Identities = 38/89 (42%), Positives = 57/89 (64%)

Query: 160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI 219
           L L N  L G+IP  I  L  L +++LS N + G++P  LG++T+L  L L  NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 220 PSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248
           P +LG+L  L  LN++ N LSG +P+++G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.6 bits (186), Expect = 5e-14
 Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 458 GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTE 517
           G IP +I     LQ +NLS N I G IP  LG ++SL  L L+ N   GS+P  +G LT 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 518 LELLDLSENRLSNAIPGSLGN-LLKVHYLNLSNN 550
           L +L+L+ N LS  +P +LG  LL     N ++N
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.3 bits (180), Expect = 2e-13
 Identities = 34/82 (41%), Positives = 53/82 (64%)

Query: 263 LSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL 322
           L G IP +I  LR L +++LS N + G IP S+G+  +L +L L  N  +GSIP+ +G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 323 KCLFDLELSMNNLTGVIPSSIG 344
             L  L L+ N+L+G +P+++G
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 33/85 (38%), Positives = 53/85 (62%)

Query: 473 LNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAI 532
           L L +  + G IP ++ +L  L  + L+ N + G++PP +G++T LE+LDLS N  + +I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 533 PGSLGNLLKVHYLNLSNNEFSHKIP 557
           P SLG L  +  LNL+ N  S ++P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 36/92 (39%), Positives = 52/92 (56%)

Query: 277 LSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLT 336
           +  L L    L G IP+ I    +L  + L  N + G+IP  +G++  L  L+LS N+  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 337 GVIPSSIGNLRNLRLLYLYRNELSGSIPQAIG 368
           G IP S+G L +LR+L L  N LSG +P A+G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 309 NQ-LSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAI 367
           NQ L G IP +I  L+ L  + LS N++ G IP S+G++ +L +L L  N  +GSIP+++
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 368 GNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSG 409
           G L  L  L L  N   G +P        L R   N  + +G
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRL-LHRASFNFTDNAG 527

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 4e-11
 Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 9/150 (6%)

Query: 545 LNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGF 604
           L L N      IP    KL+  L  ++LS N + G IP  + ++ SL  L+LSYN  +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 605 IPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQ--GNRGLCGDDKGLSSCKAF 662
           IP     +  L  ++++ N L G VP +   R     +     N GLCG   GL +C   
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG-IPGLRACGPH 540

Query: 663 RSSRRASVKKLIIMILLPLLGVLALSIISI 692
            S      K  I +     +  L L I ++
Sbjct: 541 LS---VGAK--IGIAFGVSVAFLFLVICAM 565

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 8e-11
 Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 10/104 (9%)

Query: 324 CLFD----------LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVEL 373
           C FD          L L    L G IP+ I  LR+L+ + L  N + G+IP ++G++  L
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468

Query: 374 VSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVG 417
             L L +N F G IP++   LT+L  + +N N+LSG +  A  G
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 34/92 (36%), Positives = 53/92 (57%)

Query: 181 LSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240
           +  L L    L G +P  +  L +L +++L  NS+ G IP +LG +  L  L++S N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG 272
           G+IP S+G + +LR L L  N LSG +P  +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 497 LILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKI 556
           L L+   L G +P +I  L  L+ ++LS N +   IP SLG++  +  L+LS N F+  I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 557 PTQFEKLQLQLSELDLSQNFLEGEIPSQI 585
           P    +L   L  L+L+ N L G +P+ +
Sbjct: 483 PESLGQLTS-LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 5e-09
 Identities = 26/68 (38%), Positives = 38/68 (55%)

Query: 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG 481
           L  ++LS N+  G I    G    L  LD S N+  GSIP  +G  + L++LNL+ N + 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 482 GKIPMELG 489
           G++P  LG
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 9/224 (4%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSI 147
           L+L NN +  I P        L+ LDLS NK+   +P  +  L  L  L L  N L+  +
Sbjct: 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DL 178

Query: 148 PQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVT 207
           P+ L NLS  + L L  N +S  +PP I  L +L  LDLS N +I  +   L NL NL  
Sbjct: 179 PKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSG 236

Query: 208 LHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI 267
           L L NN L   +P ++G L  L  L++S N +S    SS+G++ NLR L L  N LS ++
Sbjct: 237 LELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNAL 293

Query: 268 PKEIG--NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSN 309
           P       L  L    L   +   +  +SI  +NN+      S+
Sbjct: 294 PLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSS 337

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 23/66 (34%), Positives = 32/66 (48%)

Query: 567 LSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           +  L L    L G IP+ I  +  L  +NLS N + G IP     +  L  +D+SYN   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 627 GPVPFS 632
           G +P S
Sbjct: 480 GSIPES 485

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 5e-07
 Identities = 92/301 (30%), Positives = 133/301 (44%), Gaps = 42/301 (13%)

Query: 283 SINRLNGVIPSSIGN-----SNNLSILYLYSNQL--SGSIPKEIGNLKCLFDLELSMNNL 335
           ++NRL   + S+         + L  L L S     S    + + NL  L  L+L++N L
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 336 TGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLV-ELVSLLLGFNYFRGPIPKNFKNL 394
              I S +  L NL  L L  N ++  IP  IG L   L  L L  N     +P   +NL
Sbjct: 106 RSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNL 162

Query: 395 TNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVN 454
            NL  + ++ N+LS       +     L+ LDLS N                        
Sbjct: 163 PNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKIS--------------------- 199

Query: 455 NITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGT 514
                +PPEI   S L+ L+LS+N I  ++   L  L +L+ L L+ N+L   LP  IG 
Sbjct: 200 ----DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253

Query: 515 LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQ 574
           L+ LE LDLS N++S+    SLG+L  +  L+LS N  S+ +P     L L    L+L  
Sbjct: 254 LSNLETLDLSNNQISS--ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLL 311

Query: 575 N 575
            
Sbjct: 312 T 312

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 7/200 (3%)

Query: 199 LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFL 258
           L NL  L +L L  N L   I S L +L  L++L++  N+++   P       NL+ L L
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147

Query: 259 YSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKE 318
             N++  S+P  + NL +L NLDLS N L+  +P  + N +NL+ L L  N++S  +P E
Sbjct: 148 SDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPE 204

Query: 319 IGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLL 378
           I  L  L +L+LS NN    + SS+ NL+NL  L L  N+L   +P++IGNL  L +L L
Sbjct: 205 IELLSALEELDLS-NNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDL 262

Query: 379 GFN-YFRGPIPKNFKNLTNL 397
             N         +  NL  L
Sbjct: 263 SNNQISSISSLGSLTNLREL 282

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%)

Query: 566 QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRL 625
            L  LDLS N L          + +L  L+LS N L+   P  F  +  L S+D+S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 11 EEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCN 55
          ++  ALL +K+SL       L SW  S  +      C+W+G+ C+
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSWNPSSSDP-----CSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 64/274 (23%), Positives = 108/274 (39%), Gaps = 41/274 (14%)

Query: 391 FKNLTNLVRVRMNQNNLSGN----ISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQ- 445
              L  L  +R+  N L       ++ A +   P+L  L LS  N  G+I        Q 
Sbjct: 19  LPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLS-LNETGRIPRGLQSLLQG 76

Query: 446 ------LGTLDFSVNNITGSIPPEIGN---SSKLQVLNLSSNHIGGKIPMELGR-----L 491
                 L  LD S N +       + +   SS LQ L L++N +G +    L +      
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 492 SSLNKLILNKNQLFG----SLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKV----H 543
            +L KL+L +N+L G    +L   +    +L+ L+L+ N + +A   +L   LK      
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 544 YLNLSNNEFSHKIPTQFE---KLQLQLSELDLSQNFLEGEIPSQICN-----MESLVKLN 595
            L+L+NN  + +  +           L  L+L  N L     + + +       SL+ L+
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256

Query: 596 LSYNQL--SGFIPNC--FEDMHGLSSIDISYNRL 625
           LS N +   G         +   L  +D+  N+ 
Sbjct: 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 55/240 (22%), Positives = 90/240 (37%), Gaps = 37/240 (15%)

Query: 180 SLSTLDLSLNQLIGSVPF------FLGNLTNLVTLHLFNNSLS----GFIPSTLGKLKCL 229
           SL  L LSLN+              L     L  L L +N+L     G + S L +   L
Sbjct: 52  SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL-RSSSL 110

Query: 230 SNLNMSMNHLSGAIPSSIG-----NVRNLRSLFLYSNELSGSIPKEIGNL----RSLSNL 280
             L ++ N L       +          L  L L  N L G+  + +       R L  L
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 281 DLSINRLNG----VIPSSIGNSNNLSILYLYSNQL----SGSIPKEIGNLKCLFDLELSM 332
           +L+ N +       +   +  + NL +L L +N L    + ++ + + +LK L  L L  
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 333 NNLTGVI-----PSSIGNLRNLRLLYLYRNEL----SGSIPQAIGNLVELVSLLLGFNYF 383
           NNLT         + +    +L  L L  N++    +  + + +     L+ L L  N F
Sbjct: 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQN 575
           L+ LDLS NRL+    G+   L  +  L+LS N  +   P  F  L   L  LDLS N
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLP-SLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 276 SLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNL 335
           +L +LDLS NRL  +   +     NL +L L  N L+   P+    L  L  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYF 383
           L+LS N LT +   +   L NL++L L  N L+   P+A   L  L SL L  N  
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	775
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.52
PLN03150	623	hypothetical protein; Provisional	99.44
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.85
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.77
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.2
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.08
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.07
KOG3653	534	consensus Transforming growth factor beta/activin	98.03
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.94
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.81
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.71
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.7
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.6
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.57
KOG2052	513	consensus Activin A type IB receptor, serine/threo	97.49
PRK15386	426	type III secretion protein GogB; Provisional	97.48
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	97.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	97.35
KOG4341	483	consensus F-box protein containing LRR [General fu	97.28
KOG4341	483	consensus F-box protein containing LRR [General fu	97.15
PLN03224	507	probable serine/threonine protein kinase; Provisio	97.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.92
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	96.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.8
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	96.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.34
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.3
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.81
KOG0192	362	consensus Tyrosine kinase specific for activated (	95.76
PTZ00284	467	protein kinase; Provisional	95.66
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	95.3
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	95.28
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	95.16
PTZ00036	440	glycogen synthase kinase; Provisional	94.95
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	94.84
PTZ00283	496	serine/threonine protein kinase; Provisional	94.81
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	94.81
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	94.78
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.59
smart00090	237	RIO RIO-like kinase.	94.54
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	94.42
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.33
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	94.08
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	94.04
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	93.93
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	93.86
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	93.66
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	93.47
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	93.42
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	93.38
PLN00034	353	mitogen-activated protein kinase kinase; Provision	93.27
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	93.09
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	92.86
KOG0605	550	consensus NDR and related serine/threonine kinases	92.76
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	92.64
KOG0694	694	consensus Serine/threonine protein kinase [Signal	92.45
KOG1027	903	consensus Serine/threonine protein kinase and endo	92.43
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	92.27
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	91.93
KOG4308	478	consensus LRR-containing protein [Function unknown	91.9
PHA03211	461	serine/threonine kinase US3; Provisional	91.86
KOG0577	948	consensus Serine/threonine protein kinase [Signal	91.85
PHA03209	357	serine/threonine kinase US3; Provisional	91.51
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	91.5
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	91.06
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	90.91
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	90.89
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	90.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.56
KOG4308	478	consensus LRR-containing protein [Function unknown	90.24
KOG0598	357	consensus Ribosomal protein S6 kinase and related	89.73
COG0661	517	AarF Predicted unusual protein kinase [General fun	89.66
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	89.62
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.59
PHA03212	391	serine/threonine kinase US3; Provisional	89.42
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	88.7
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	88.55
KOG0581	364	consensus Mitogen-activated protein kinase kinase	87.93
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.84
KOG4721	904	consensus Serine/threonine protein kinase, contain	87.55
PRK09605	535	bifunctional UGMP family protein/serine/threonine	86.31
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	86.08
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	85.99
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	85.99
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	85.95
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	85.9
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	85.14
PHA03207	392	serine/threonine kinase US3; Provisional	84.93
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	84.55
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.26
smart00370	26	LRR Leucine-rich repeats, outliers.	84.26
KOG1989	738	consensus ARK protein kinase family [Signal transd	84.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.17
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.12
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.7
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	83.47
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.74
smart00370	26	LRR Leucine-rich repeats, outliers.	82.74
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	82.72
KOG1167	418	consensus Serine/threonine protein kinase of the C	81.27
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	80.9
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	80.22

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.2e-81  Score=750.13  Aligned_cols=694  Identities=36%  Similarity=0.592  Sum_probs=487.4

Q ss_pred             cHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEE
Q 043943            9 STEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFL   88 (775)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L   88 (775)
                      .++|+++|++||+++. +|...+.+|.      .+.+||.|.|+.|+..++|+.++|+++.+.|.++ ..+..+++|++|
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~------~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L   98 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPLKYLSNWN------SSADVCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTI   98 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCcccCCCCC------CCCCCCcCcceecCCCCcEEEEEecCCCccccCC-hHHhCCCCCCEE
Confidence            5689999999999996 4766778997      4678999999999888899999999999998887 788899999999


Q ss_pred             ECCCCCCcccCccccc-CCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcC
Q 043943           89 NLFNNELFGIIPPQIS-QLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL  167 (775)
Q Consensus        89 ~ls~~~~~~~~~~~~~-~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  167 (775)
                      +|++|.+.+.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus        99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113         99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence            9999998887776654 888999999999988877774  4578888888888888878888888888888888888887


Q ss_pred             cccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccc
Q 043943          168 SGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI  247 (775)
Q Consensus       168 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l  247 (775)
                      .+.+|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+
T Consensus       177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  256 (968)
T PLN00113        177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL  256 (968)
T ss_pred             cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence            77777777777777777777777777777777777777777777777776666666666677777776666666666666


Q ss_pred             cCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCe
Q 043943          248 GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFD  327 (775)
Q Consensus       248 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  327 (775)
                      +++++|+.|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.             
T Consensus       257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~-------------  323 (968)
T PLN00113        257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK-------------  323 (968)
T ss_pred             hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc-------------
Confidence            6666666666666666655565555566666666666555555555555555555555555555444             


Q ss_pred             eeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceecccccc
Q 043943          328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNL  407 (775)
Q Consensus       328 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  407 (775)
                                 .|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..++            
T Consensus       324 -----------~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~------------  380 (968)
T PLN00113        324 -----------IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG------------  380 (968)
T ss_pred             -----------CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC------------
Confidence                       444445555555555555555555555555555555555555555554444443333            


Q ss_pred             ccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChh
Q 043943          408 SGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME  487 (775)
Q Consensus       408 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  487 (775)
                                   +|+.|++++|++.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..
T Consensus       381 -------------~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~  447 (968)
T PLN00113        381 -------------NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR  447 (968)
T ss_pred             -------------CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh
Confidence                         3444444444444445555555566666666666666666666666666777777777776666666


Q ss_pred             hhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccc
Q 043943          488 LGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQL  567 (775)
Q Consensus       488 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L  567 (775)
                      +..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++..|..+.++++|+.|+|++|++.+.+|..+..+. +|
T Consensus       448 ~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L  525 (968)
T PLN00113        448 KWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK-KL  525 (968)
T ss_pred             hccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc-CC
Confidence            6667777777777777776666544 357788888888888888888888888888999999998888888888887 89


Q ss_pred             cEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCc
Q 043943          568 SELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNR  647 (775)
Q Consensus       568 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~  647 (775)
                      +.|+|++|.+++.+|..|..+++|+.|++++|++++.+|..+..+++|+.+++++|++.|.+|..+++..+....+.||+
T Consensus       526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~  605 (968)
T PLN00113        526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI  605 (968)
T ss_pred             CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999889899899999999


Q ss_pred             CCCCCCC--CCCCCCCccCCcccccceeeehhhHHHHHHHHHHHHHHhhheecccccccccCCCCCCCCCCCc-cccccc
Q 043943          648 GLCGDDK--GLSSCKAFRSSRRASVKKLIIMILLPLLGVLALSIISIGLLFNSRRTKMVSQTGQSSPANASGF-LSTLTL  724 (775)
Q Consensus       648 ~lc~~~~--~~~~c~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~  724 (775)
                      .+|+.++  +..+|...    ++. ....++++++++++++++++++++++++|+++......+ ........ ......
T Consensus       606 ~lc~~~~~~~~~~c~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  679 (968)
T PLN00113        606 DLCGGDTTSGLPPCKRV----RKT-PSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVE-NEDGTWELQFFDSKV  679 (968)
T ss_pred             cccCCccccCCCCCccc----ccc-ceeeeehhHHHHHHHHHHHHHHHHHHHHhhhcccccccc-ccccccccccccccc
Confidence            9998543  23345321    111 122222222222222222222223322222211111100 00000000 000011


Q ss_pred             cccccHHHHHHHhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          725 EGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       725 ~~~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      .+.++++++..   .|.+.++||+|+||.||||+. .+|..||||++..
T Consensus       680 ~~~~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~  725 (968)
T PLN00113        680 SKSITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQFVVKEIND  725 (968)
T ss_pred             chhhhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcEEEEEEccC
Confidence            23456677654   477889999999999999997 5899999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.8e-58  Score=552.05  Aligned_cols=516  Identities=37%  Similarity=0.585  Sum_probs=399.5

Q ss_pred             CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCccccc-CCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943          107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLG-NLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD  185 (775)
Q Consensus       107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  185 (775)
                      .+++.|++++|.+.+.+|..|..+++|++|+|++|.+.+.+|..+. .+++|++|++++|.+++.+|.  ..+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            4678888888888877888888888888888888888777776654 777888888887777766554  3466777777


Q ss_pred             ccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCC
Q 043943          186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG  265 (775)
Q Consensus       186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  265 (775)
                      +++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..++++++|+.|++++|.+++
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            77777666666666667777777777776666666666666666666666666666666666666666666666666666


Q ss_pred             CCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCC
Q 043943          266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGN  345 (775)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  345 (775)
                      .+|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            66666666666666666666666566666666666666666666665555555555555555555555555555555555


Q ss_pred             CCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEE
Q 043943          346 LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFL  425 (775)
Q Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  425 (775)
                      +++|+.|++++|.+.+..|                        ..+..+++|+.|++++|.+.+..|..+ +.+++|+.|
T Consensus       307 l~~L~~L~l~~n~~~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L  361 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIP------------------------VALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVL  361 (968)
T ss_pred             CCCCcEEECCCCccCCcCC------------------------hhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEE
Confidence            5555555555555554444                        444455555555555555555555544 667888889


Q ss_pred             eCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCc
Q 043943          426 DLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF  505 (775)
Q Consensus       426 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~  505 (775)
                      ++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.++
T Consensus       362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  441 (968)
T PLN00113        362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ  441 (968)
T ss_pred             ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence            99999998889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccc
Q 043943          506 GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI  585 (775)
Q Consensus       506 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l  585 (775)
                      +.++..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++.+|..+..++ +|+.|++++|++++.+|..+
T Consensus       442 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~  519 (968)
T PLN00113        442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDEL  519 (968)
T ss_pred             CccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHH
Confidence            9999989999999999999999999888766 458999999999999999999999998 99999999999999999999


Q ss_pred             cCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCC-CcCCCCCccccCCCcCCCC
Q 043943          586 CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS-KAFRDAPAEALQGNRGLCG  651 (775)
Q Consensus       586 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~-~~~~~~~~~~~~gn~~lc~  651 (775)
                      ..+++|++|++++|.+++.+|..+.++++|+.|++++|+++|.+|.. .....+....+.+|+..+.
T Consensus       520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  586 (968)
T PLN00113        520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS  586 (968)
T ss_pred             cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence            99999999999999999999999999999999999999999999864 2234455556677776553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-38  Score=320.40  Aligned_cols=367  Identities=24%  Similarity=0.248  Sum_probs=296.1

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      +..+.||+++|.+..+.+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|..+-.+.+..++.|+.|||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            46678999999998888888899999999999999888 67876666777999999999888777788888999999999


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA  242 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  242 (775)
                      +.|.|+.+....|..-.++++|+|++|.++..-...|.++.+|.+|.|+.|.++...+..|.++++|+.|+|..|++.-.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            99999888778888888899999999988877777888888999999999999888888888899999999999988744


Q ss_pred             CCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCC
Q 043943          243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL  322 (775)
Q Consensus       243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  322 (775)
                      .--.|..+++|+.|.+..|++...-...|..|.++++|+|+.|+++..-..++.+++.|+.|++++|.+..+.++.+.-+
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            45678888899999999888886666678888899999999998888777888888889999999988888888888888


Q ss_pred             CCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCcc---CcCCCcccc
Q 043943          323 KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKN---FKNLTNLVR  399 (775)
Q Consensus       323 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~  399 (775)
                      ++|++|+|+.|+++...+..|..+..|++|+|+.|.++..-...|..+++|++|+|..|.+++.+.+.   |.++++|+.
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            88888888888888888888888888888888888887666667777888888888888887665432   556666666


Q ss_pred             eeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcc
Q 043943          400 VRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS  452 (775)
Q Consensus       400 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  452 (775)
                      |++.+|++..+....| ..++.|++|+|.+|.+..+.+..|..+ .|++|.++
T Consensus       397 L~l~gNqlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  397 LRLTGNQLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             eeecCceeeecchhhh-ccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            6666666655444444 556666666666666666666666665 56665554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-38  Score=317.04  Aligned_cols=391  Identities=25%  Similarity=0.228  Sum_probs=328.0

Q ss_pred             CCEEECCCCCCcccCcccccCC--CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           85 LLFLNLFNNELFGIIPPQISQL--FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        85 L~~L~ls~~~~~~~~~~~~~~l--~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      -+.|+.+++.+..+....+..+  ..-+.||+++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|+|
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            4567777777654333333322  23456999999999888888999999999999999998 77876666778999999


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA  242 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  242 (775)
                      .+|.|+.+-...+..++.|+.|||+.|.++......|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++..
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence            99999999889999999999999999998866666787778999999999999988888999999999999999999977


Q ss_pred             CCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCC
Q 043943          243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL  322 (775)
Q Consensus       243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  322 (775)
                      .+..|.++++|+.|+|..|++.-.---.|..+++|+.|.+..|.+.......|..+.++++|+|..|+++..-..++.++
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence            77778889999999999998874434568889999999999999988778889999999999999999988777889999


Q ss_pred             CCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceec
Q 043943          323 KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRM  402 (775)
Q Consensus       323 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  402 (775)
                      +.|+.|+++.|.+..+-++....+++|+.|+|+.|.++...+..|..+..|++|.|++|.+...-...|..+.+|+.|+|
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence            99999999999999888888888999999999999999888888888899999999999888777777888888888888


Q ss_pred             cccccccccchh--hhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccC
Q 043943          403 NQNNLSGNISEA--FVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSS  477 (775)
Q Consensus       403 ~~n~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~  477 (775)
                      ++|.+...+.+.  .+..+++|+.|++.+|++..+....|.++++|+.|+|.+|.|..+-|.+|..+ .|++|.+..
T Consensus       373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            888877554332  23557888888888888887777788888888888888888877777788777 777776654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.8e-40  Score=318.84  Aligned_cols=491  Identities=31%  Similarity=0.440  Sum_probs=255.6

Q ss_pred             CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943           84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY  163 (775)
Q Consensus        84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  163 (775)
                      .++.+.+++|.+. .+.+.+.++..|.+|++++|++. .+|.+++.+..++.|+.++|++. .+|..+..+.+|..++++
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            4555666666655 23334556666666666666666 45556666666666666666665 566666666666666666


Q ss_pred             cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccC
Q 043943          164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI  243 (775)
Q Consensus       164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  243 (775)
                      +|.+.. .+..++.+..|+.++..+|+++ ..|.++..+.+|..+++.+|++....|+.+ +++.|++|+...|.+. .+
T Consensus       123 ~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tl  198 (565)
T KOG0472|consen  123 SNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TL  198 (565)
T ss_pred             ccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cC
Confidence            666553 3445556666666666666665 455556666666666666666664433333 3666666666666555 55


Q ss_pred             CccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCC
Q 043943          244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK  323 (775)
Q Consensus       244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  323 (775)
                      |..++.+.+|+.|++..|++. ..| .|..|+.|++|+++.|.+.....+...+++++..|++.+|+++ ..|+.+.-+.
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr  275 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR  275 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence            666666666666666666665 444 4666666666666666665333333345666666666666666 4556666666


Q ss_pred             CCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceecc
Q 043943          324 CLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMN  403 (775)
Q Consensus       324 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  403 (775)
                      +|++||+++|.+++ .|..++++ .|+.|.+.+|.+.. +-..+-+...-+.|                  +.|+. .+.
T Consensus       276 sL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vL------------------KyLrs-~~~  333 (565)
T KOG0472|consen  276 SLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVL------------------KYLRS-KIK  333 (565)
T ss_pred             hhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHH------------------HHHHH-hhc
Confidence            66666666666663 34556666 66666666665541 11111111100000                  00000 000


Q ss_pred             ccccccc--cchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCC---CCcEEEccCC
Q 043943          404 QNNLSGN--ISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSS---KLQVLNLSSN  478 (775)
Q Consensus       404 ~n~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~~L~Ls~n  478 (775)
                      +-.+...  ..+.- ...+             ...........+.+.|++++-+++ .+|.......   -.+.++++.|
T Consensus       334 ~dglS~se~~~e~~-~t~~-------------~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskN  398 (565)
T KOG0472|consen  334 DDGLSQSEGGTETA-MTLP-------------SESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKN  398 (565)
T ss_pred             cCCCCCCccccccc-CCCC-------------CCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccc
Confidence            0000000  00000 0000             000011112233344444444444 2222211111   2445555555


Q ss_pred             CccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCch
Q 043943          479 HIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPT  558 (775)
Q Consensus       479 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  558 (775)
                      ++. .+|..+..+..+.+.-+..|+..+-+|..++.+++|+.|++++|.+. .+|..++.+..|+.|+++.|+|. .+|.
T Consensus       399 qL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~  475 (565)
T KOG0472|consen  399 QLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPE  475 (565)
T ss_pred             hHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchH
Confidence            554 34444444443333222222222244445555555555555555554 34555555555666666666554 4555


Q ss_pred             hHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 043943          559 QFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ  626 (775)
Q Consensus       559 ~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~  626 (775)
                      .+..+. .++.+-.++|++....|+.+.++.+|..||+.+|.+. .+|..+.++++|++|++++|+|.
T Consensus       476 ~~y~lq-~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  476 CLYELQ-TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHhhHH-HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            555444 4555555556665444455666666666666666665 34555666666666666666665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-40  Score=319.81  Aligned_cols=492  Identities=30%  Similarity=0.416  Sum_probs=355.4

Q ss_pred             cCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCE
Q 043943          104 SQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLST  183 (775)
Q Consensus       104 ~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  183 (775)
                      ..-..|+.|.+++|.+. .+...+.++..|.+|++.+|++. ..|.+++.+..++.++.++|++. .+|..+..+.+|+.
T Consensus        42 W~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~  118 (565)
T KOG0472|consen   42 WEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVK  118 (565)
T ss_pred             hhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence            34466888899999888 44456888899999999999887 77888888888999999988887 56777888888888


Q ss_pred             EeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccC
Q 043943          184 LDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL  263 (775)
Q Consensus       184 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  263 (775)
                      ++++.|.+. ..++.++.+..|+.++..+|+++ ..|..+..+.+|..+++.+|.+... |+..-+++.|++|+...|.+
T Consensus       119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L  195 (565)
T KOG0472|consen  119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLL  195 (565)
T ss_pred             hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhh
Confidence            888888876 56667888888888888888887 4577788888888888888888744 44444488888888888877


Q ss_pred             CCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccC-CCCCCCCeeeCcCCcCcCccCCc
Q 043943          264 SGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSS  342 (775)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~  342 (775)
                      + .+|+.++.+.+|+.|++..|++. ..| .|..+..|++++++.|++. .+|.+. ..++++..||+.+|+++ ..|+.
T Consensus       196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde  270 (565)
T KOG0472|consen  196 E-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDE  270 (565)
T ss_pred             h-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchH
Confidence            5 77788888888888888888887 445 6778888888888888777 444443 46777777777777777 34655


Q ss_pred             CCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhcc-CCC
Q 043943          343 IGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGT-YPT  421 (775)
Q Consensus       343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~~  421 (775)
                      +.-+++|..||+++|.++ .+|..++++ +|+.|-+.+|.+.                        ..-.+...+. -.-
T Consensus       271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr------------------------TiRr~ii~~gT~~v  324 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR------------------------TIRREIISKGTQEV  324 (565)
T ss_pred             HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH------------------------HHHHHHHcccHHHH
Confidence            666667777777777766 345555555 5555555555443                        2111111000 000


Q ss_pred             CcEEe--CCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCC---CCCE
Q 043943          422 LSFLD--LSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLS---SLNK  496 (775)
Q Consensus       422 L~~L~--l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~---~L~~  496 (775)
                      |++|.  +....++......-      ..-+    ...+..| ......+.+.|++++-+++ .+|.....-.   -.+.
T Consensus       325 LKyLrs~~~~dglS~se~~~e------~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~  392 (565)
T KOG0472|consen  325 LKYLRSKIKDDGLSQSEGGTE------TAMT----LPSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTS  392 (565)
T ss_pred             HHHHHHhhccCCCCCCccccc------ccCC----CCCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEE
Confidence            11111  00001100000000      0000    0111111 2345567889999998888 4555443322   3789


Q ss_pred             EEcCCCcCcccCCcCccCCCCCCE-EECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCC
Q 043943          497 LILNKNQLFGSLPPEIGTLTELEL-LDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQN  575 (775)
Q Consensus       497 L~L~~n~~~~~~~~~~~~l~~L~~-L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n  575 (775)
                      .++++|++. ++|..+..+..+.+ +++++|.+ +.+|..+..+++|..|+|++|.+. .+|..++.+. .|+.||+++|
T Consensus       393 VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv-~Lq~LnlS~N  468 (565)
T KOG0472|consen  393 VNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV-RLQTLNLSFN  468 (565)
T ss_pred             EecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhh-hhheeccccc
Confidence            999999998 78888877777655 45555555 478888999999999999999886 6899999999 7999999999


Q ss_pred             cCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCcCC
Q 043943          576 FLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGL  649 (775)
Q Consensus       576 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~l  649 (775)
                      ++. .+|.++..+..|+.+-.++|++....|+.+.++.+|..||+.+|.++...|.-+...+.....+.|||.-
T Consensus       469 rFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  469 RFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            998 8899998899999999999999999999999999999999999999987777777777778888899864

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-36  Score=318.84  Aligned_cols=487  Identities=31%  Similarity=0.384  Sum_probs=267.0

Q ss_pred             CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943           84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY  163 (775)
Q Consensus        84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  163 (775)
                      .++.|+++.|.+.....+.+.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|.|. ..|.+..++.+|+++.|.
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            3666777777654333334455555777777777666 56666777777777777777666 556666677777777776


Q ss_pred             cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccC
Q 043943          164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI  243 (775)
Q Consensus       164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  243 (775)
                      .|.+. ..|..+..+.+|++|+++.|.+. ..|..+..+..++.+..++|.....    ++... ++.+++..|.+.+.+
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~  172 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSF  172 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccch
Confidence            66554 45666666667777777776655 4555555666666666666622111    12111 566666666666555


Q ss_pred             CccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCC
Q 043943          244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK  323 (775)
Q Consensus       244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  323 (775)
                      +..+..+.+  .|+|++|.+.   ...+.++++|+.|....|++....    -.-++|+.|+.+.|.++...+  -..-.
T Consensus       173 ~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~  241 (1081)
T KOG0618|consen  173 LIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPL  241 (1081)
T ss_pred             hcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccc
Confidence            555555444  5666666554   123445556666665555554221    123455555555555552211  11223


Q ss_pred             CCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceecc
Q 043943          324 CLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMN  403 (775)
Q Consensus       324 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  403 (775)
                      +|++++++.|++... |+++..+.+|+.++...|.++ .+|..+...++|+.+.+.+|.+.- +|.....+++|+.|++.
T Consensus       242 nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeeh
Confidence            455555555555532 355555555555555555553 444444455555555555555442 33334444444445444


Q ss_pred             ccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCC-CCEEEcccCcccccCCccccCCCCCcEEEccCCCccC
Q 043943          404 QNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQ-LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGG  482 (775)
Q Consensus       404 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~  482 (775)
                      .|++                         ....+..+..... |+.|+.+.|++.......=...+.|+.|++.+|.+++
T Consensus       319 ~N~L-------------------------~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd  373 (1081)
T KOG0618|consen  319 SNNL-------------------------PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD  373 (1081)
T ss_pred             hccc-------------------------cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence            4444                         3222222222222 4444444444432211112234456666666666665


Q ss_pred             cCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHh
Q 043943          483 KIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK  562 (775)
Q Consensus       483 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  562 (775)
                      ..-..+.+...|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+.++..|++|..-+|++. ..| .+..
T Consensus       374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~  450 (1081)
T KOG0618|consen  374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ  450 (1081)
T ss_pred             cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence            55555666666666666666665333334556666666666666666 34566666666666666666665 344 5666


Q ss_pred             hhccccEEECcCCcCccc-CCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCC
Q 043943          563 LQLQLSELDLSQNFLEGE-IPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN  623 (775)
Q Consensus       563 l~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n  623 (775)
                      ++ +|+.+|+|.|+++.. +|... .-++|++||+++|.-.-..-..|..+..+..+++.-|
T Consensus       451 l~-qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  451 LP-QLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cC-cceEEecccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            66 677777777766532 22222 2267777777777644444455556666666666555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1.5e-35  Score=315.24  Aligned_cols=464  Identities=29%  Similarity=0.300  Sum_probs=344.5

Q ss_pred             EEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECC
Q 043943           60 VVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLY  139 (775)
Q Consensus        60 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~  139 (775)
                      ++.+++..+.+-. .|.....+.-.|+.|++++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|.|.
T Consensus        23 ~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLS-RPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhcccccccc-CchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            6666666554432 12233344445999999999986 67888999999999999999888 678889999999999999


Q ss_pred             CccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCcccc
Q 043943          140 SNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI  219 (775)
Q Consensus       140 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  219 (775)
                      +|.+. ..|.++..+.+|++|+++.|.+. .+|..+..+..++.+..++|.....    ++... .+.+++..|.+.+.+
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~  172 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSF  172 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccch
Confidence            99887 88999999999999999999987 5688889999999999999932222    22222 888899999888888


Q ss_pred             CccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCC
Q 043943          220 PSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSN  299 (775)
Q Consensus       220 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~  299 (775)
                      +..+..+++  .|+|.+|.+. .  ..+..+.+|+.|....|++....    ..-++|+.|+.+.|.++...+.  ....
T Consensus       173 ~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~  241 (1081)
T KOG0618|consen  173 LIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPL  241 (1081)
T ss_pred             hcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccc
Confidence            888877777  7999999886 2  34678889999999999886321    2457899999999999844332  2346


Q ss_pred             CCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEec
Q 043943          300 NLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLG  379 (775)
Q Consensus       300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  379 (775)
                      +|+.++++.|++++ +|.++..+.+|+.+++.+|+++ .+|..+....+|+.|.+..|.+. -+|......+.|++|+|.
T Consensus       242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence            89999999999994 5699999999999999999996 56777888899999999999987 567777889999999999


Q ss_pred             cceecccCCccCcCCCc-ccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccc
Q 043943          380 FNYFRGPIPKNFKNLTN-LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITG  458 (775)
Q Consensus       380 ~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  458 (775)
                      .|++....+..+.-... |..+..+.|.+.... ..--..++.|+.|++.+|.++...-..+.++.+|+.|+|++|++..
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~  397 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS  397 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence            99998654433333332 566666666554322 1111334567777777777777766667777777777777777764


Q ss_pred             cCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccC
Q 043943          459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGN  538 (775)
Q Consensus       459 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  538 (775)
                      .....+.++..|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|+|.|+++...-.....
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p  474 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP  474 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence            33345667777777777777776 45666777777777777777775 455 5666677777777777665432221111


Q ss_pred             cCCCCEEEccCCc
Q 043943          539 LLKVHYLNLSNNE  551 (775)
Q Consensus       539 l~~L~~L~Ls~n~  551 (775)
                      .++|++|||++|.
T Consensus       475 ~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNT  487 (1081)
T ss_pred             CcccceeeccCCc
Confidence            2556666666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.3e-33  Score=285.03  Aligned_cols=364  Identities=29%  Similarity=0.372  Sum_probs=253.5

Q ss_pred             CCCCCEEECCCCCCc-ccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943           82 FPDLLFLNLFNNELF-GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL  160 (775)
Q Consensus        82 l~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  160 (775)
                      ++-+|-.|+++|.|+ +..|.....+++++.|.|....+. .+|..++.|.+|++|.+++|++. .+...+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            445666677777776 346677777777777777777766 56777777777777777777776 344566777777777


Q ss_pred             EcccCcCcc-cCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccc
Q 043943          161 SLYNNSLSG-YIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL  239 (775)
Q Consensus       161 ~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  239 (775)
                      ++.+|++.. -+|..+.++..|..|||++|++. ..|..+...+++-+|+|++|+|..+....|.+++.|-.|+|++|++
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            777777653 35667777778888888888776 6677777778888888888888876666777888888888888888


Q ss_pred             cccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc-ccCCccCCCCCCCCeeeccCccccCCCCcc
Q 043943          240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN-GVIPSSIGNSNNLSILYLYSNQLSGSIPKE  318 (775)
Q Consensus       240 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  318 (775)
                      . .+|+.+..+.+|++|+|++|.+...-...+-.+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|+.
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            7 66777788888888888888765332233445667777888776432 356777888888888888888887 67888


Q ss_pred             CCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecc-cCCccCcCCCcc
Q 043943          319 IGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRG-PIPKNFKNLTNL  397 (775)
Q Consensus       319 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L  397 (775)
                      +..+++|+.|+|++|+++.. ....+...+|++|+++.|+++ .+|..+..+++|+.|.+.+|.+.- -+|..++.+..|
T Consensus       241 ly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             HhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence            88888888888888888753 333455678888888888887 677777888888888777777653 356666666666


Q ss_pred             cceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCc
Q 043943          398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN  455 (775)
Q Consensus       398 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  455 (775)
                      +.+...+|.+. ..|+.+ ..|+.|+.|.|+.|.+. ..|..+.-++.|+.|++..|.
T Consensus       319 evf~aanN~LE-lVPEgl-cRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  319 EVFHAANNKLE-LVPEGL-CRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             HHHHhhccccc-cCchhh-hhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            66666555442 333333 44555555555555544 344455555555555555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.5e-33  Score=283.64  Aligned_cols=371  Identities=27%  Similarity=0.386  Sum_probs=262.0

Q ss_pred             CCCCCCEEEccccccc-ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCe
Q 043943          225 KLKCLSNLNMSMNHLS-GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSI  303 (775)
Q Consensus       225 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  303 (775)
                      -++-.+-+++++|.++ +.+|.....++.++.|.|...++. .+|+.++.|.+|++|.+++|++..+ -..++.++.|+.
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRs   82 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRS   82 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHH
Confidence            4566778899999988 578888889999999999988886 7888899999999999999988743 445788889999


Q ss_pred             eeccCccccC-CCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccce
Q 043943          304 LYLYSNQLSG-SIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNY  382 (775)
Q Consensus       304 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  382 (775)
                      +.+..|++.. -+|..+..+..|..|+|++|++. ..|..+..-.++-.|+|++|++..+....+.+++.|-.|+|++|.
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            9999888753 46777888899999999999988 457778888888899999999886555667788888889999988


Q ss_pred             ecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccce-eecCcCcCCCCCCCEEEcccCcccccCC
Q 043943          383 FRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFH-GQISSDWGRFPQLGTLDFSVNNITGSIP  461 (775)
Q Consensus       383 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~  461 (775)
                      +. .+|+.+..+.+|+.|.+++|.+...-...+ ..+.+|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. .+|
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP  238 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence            87 456677788888888888887643222211 33455666666665432 345666666667777777766666 566


Q ss_pred             ccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccc-cCCccccCcC
Q 043943          462 PEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSN-AIPGSLGNLL  540 (775)
Q Consensus       462 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~  540 (775)
                      +++-++++|+.|+||+|+++. .........+|++|+++.|+++ .+|.++..++.|+.|.+.+|+++- -+|..++.+.
T Consensus       239 ecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             HHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            666666667777777666653 2223344456666666666666 566666666666666666665532 2455666666


Q ss_pred             CCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCC
Q 043943          541 KVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIP  606 (775)
Q Consensus       541 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  606 (775)
                      .|+.+..++|.+. ..|+.++.+. .|+.|.|++|++. .+|+++.-++.|+.||+..|.-.-..|
T Consensus       317 ~Levf~aanN~LE-lVPEglcRC~-kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  317 QLEVFHAANNKLE-LVPEGLCRCV-KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhHHHHhhccccc-cCchhhhhhH-HHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            6666666666553 5566666666 6666666666665 566666666666666666665443333

>PLN03210 Resistant to P

Probab=99.92  E-value=6.7e-23  Score=245.99  Aligned_cols=358  Identities=23%  Similarity=0.268  Sum_probs=238.5

Q ss_pred             CCCEEEEEcCCCCCcc-ccCccccCCCCCCCEEECCCCC------CcccCcccccCCC-CCCEEeCcCCCCCCCCchhcc
Q 043943           57 DERVVGINLTTTSLNG-TLDEFSFSSFPDLLFLNLFNNE------LFGIIPPQISQLF-KLQYLDLSANKLSGKIPPEIG  128 (775)
Q Consensus        57 ~~~v~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~ls~~~------~~~~~~~~~~~l~-~L~~L~ls~n~~~~~~p~~~~  128 (775)
                      +.+|.++.+.-..+.. .+...+|..+++|+.|.+..+.      +...+|..|..++ +|+.|++.++.+. .+|..| 
T Consensus       531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-  608 (1153)
T PLN03210        531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-  608 (1153)
T ss_pred             cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence            3467776665443322 2344578889999999886653      2334666676664 5999999988877 667766 


Q ss_pred             CCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEE
Q 043943          129 QLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTL  208 (775)
Q Consensus       129 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  208 (775)
                      ...+|++|++++|.+. .+|..+..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|
T Consensus       609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            4688999999998887 677788889999999998876555555 47788899999998887666788888888899999


Q ss_pred             EcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943          209 HLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN  288 (775)
Q Consensus       209 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  288 (775)
                      ++++|.....+|..+ ++++|+.|++++|.....+|..   ..+|+.|++++|.+. .+|..+ .+++|++|++.++...
T Consensus       687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE  760 (1153)
T ss_pred             eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence            998876555566554 6888888888888655555542   357888888888876 556544 5777888877764321


Q ss_pred             c-------cCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCC
Q 043943          289 G-------VIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG  361 (775)
Q Consensus       289 ~-------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  361 (775)
                      .       ..+......++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|....
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR  839 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence            1       111112234567777777776666667777777777777777765444555544 56677777777765443


Q ss_pred             CchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCc
Q 043943          362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHN  430 (775)
Q Consensus       362 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  430 (775)
                      .+|..   ..+|+.|++++|.+. .+|.++..+++|+.|++++|.....++... ..+++|+.+++++|
T Consensus       840 ~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~-~~L~~L~~L~l~~C  903 (1153)
T PLN03210        840 TFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI-SKLKHLETVDFSDC  903 (1153)
T ss_pred             ccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc-ccccCCCeeecCCC
Confidence            44332   245666666666665 345556666666666666544333333332 34455555555554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=7.2e-23  Score=245.72  Aligned_cols=339  Identities=23%  Similarity=0.264  Sum_probs=216.2

Q ss_pred             ccccCCCCCcEEEccccc------CCCCCCccccCC-CCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCc
Q 043943          245 SSIGNVRNLRSLFLYSNE------LSGSIPKEIGNL-RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPK  317 (775)
Q Consensus       245 ~~l~~l~~L~~L~l~~n~------~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  317 (775)
                      .+|..+++|+.|.+..+.      +...+|..|..+ .+|+.|++.++.+. .+|..+ ...+|++|++.++.+. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            345566666666665432      122344555544 34777777766665 445444 3566777777777665 3455


Q ss_pred             cCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcc
Q 043943          318 EIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL  397 (775)
Q Consensus       318 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  397 (775)
                      .+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++++|
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            566677777777776654444553 5666777777777766556667777777777777777765444555544 56777


Q ss_pred             cceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCccc-------ccCCccccCCCCC
Q 043943          398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNIT-------GSIPPEIGNSSKL  470 (775)
Q Consensus       398 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~~~~~~L  470 (775)
                      +.|++++|...+.+|..    ..+|+.|++++|.+. .+|..+ .+++|++|.+.++...       ...+..+..+++|
T Consensus       707 ~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence            77777777654444432    356777777777765 344433 4667777777654321       1112223345678


Q ss_pred             cEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCC
Q 043943          471 QVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN  550 (775)
Q Consensus       471 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  550 (775)
                      +.|++++|...+.+|..+.++++|+.|+|++|...+.+|..+ .+++|+.|++++|......|..   .++|+.|+|++|
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n  856 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT  856 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence            888888877766777777788888888888776555666655 6777888888877655444432   356777888888


Q ss_pred             cCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCc
Q 043943          551 EFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQ  600 (775)
Q Consensus       551 ~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~  600 (775)
                      .++ .+|..+..++ +|+.|++++|+-...+|..+..++.|+.+++++|.
T Consensus       857 ~i~-~iP~si~~l~-~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        857 GIE-EVPWWIEKFS-NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCc-cChHHHhcCC-CCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            776 4677777777 78888887754444567777777778888877775

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-26  Score=224.87  Aligned_cols=387  Identities=21%  Similarity=0.236  Sum_probs=235.3

Q ss_pred             CCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEccc-CcccccCCccCCCCCCCCeeecc
Q 043943          229 LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSI-NRLNGVIPSSIGNSNNLSILYLY  307 (775)
Q Consensus       229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~  307 (775)
                      -..++|+.|.|+.+.+.+|+.+++|+.|+|++|.|+.+-|.+|..+++|.+|-+.+ |+|+......|.++..|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            34445555555544444555555555555555555555555555555554444433 55554444555555555555555


Q ss_pred             CccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCC------------CchhhccCCCCCcE
Q 043943          308 SNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG------------SIPQAIGNLVELVS  375 (775)
Q Consensus       308 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~  375 (775)
                      -|++.....+.|..+++|..|.+.+|.+..+--..|..+..++.+.+..|.+..            ..|..++......-
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence            555555555555555555555555555554333355555555655555554321            11112222222222


Q ss_pred             EEeccceecccCCccCcC-CCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccC
Q 043943          376 LLLGFNYFRGPIPKNFKN-LTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVN  454 (775)
Q Consensus       376 L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  454 (775)
                      ..+.+.++...-+..|.. ...+.+=..+.+......|...+..+++|+.|++++|+++.+.+.+|.+...+++|.|..|
T Consensus       229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence            222333333222222211 1122222233445666777887889999999999999999999999999999999999999


Q ss_pred             cccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccC----------------CcCccCCCCC
Q 043943          455 NITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSL----------------PPEIGTLTEL  518 (775)
Q Consensus       455 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~----------------~~~~~~l~~L  518 (775)
                      ++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|++-.|++..--                ...-+....+
T Consensus       309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~  388 (498)
T KOG4237|consen  309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFV  388 (498)
T ss_pred             hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchh
Confidence            988766678999999999999999999999999999999999999888763110                0011223446


Q ss_pred             CEEECCCCccccc---CCcc---------ccCcCCCCEE-EccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccc
Q 043943          519 ELLDLSENRLSNA---IPGS---------LGNLLKVHYL-NLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI  585 (775)
Q Consensus       519 ~~L~ls~n~l~~~---~~~~---------~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l  585 (775)
                      +.+++++..+...   .|+.         -..++-+.+. ..|+.. ...+|..+.   ....+|++.+|.++ .+|.+ 
T Consensus       389 ~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~-lk~lp~~iP---~d~telyl~gn~~~-~vp~~-  462 (498)
T KOG4237|consen  389 RQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKL-LKLLPRGIP---VDVTELYLDGNAIT-SVPDE-  462 (498)
T ss_pred             ccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccc-hhhcCCCCC---chhHHHhcccchhc-ccCHH-
Confidence            6666666554321   1211         1123333322 223322 223443322   24567889999998 77777 


Q ss_pred             cCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCC
Q 043943          586 CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN  623 (775)
Q Consensus       586 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n  623 (775)
                       .+.+| .+|+++|+++..-...|.+++.|.+|-++||
T Consensus       463 -~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  463 -LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             -HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence             67788 9999999999888889999999999999987

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-25  Score=216.81  Aligned_cols=275  Identities=26%  Similarity=0.286  Sum_probs=195.4

Q ss_pred             CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCC-ccccccCcccccCCCCCCEEEc
Q 043943           84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYS-NCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      .-..++|..|.|+.+.+.+|+.+++||.||||+|.|+.+-|.+|..+++|-.|-+-+ |+|+......|.++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            566778888888877777888888888888888888878888888888776665555 7777555566788888888888


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCc------------cccCccCCCCCCCC
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS------------GFIPSTLGKLKCLS  230 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~l~~l~~L~  230 (775)
                      ..|++.-+....|..+++|..|.+..|.+...-...|..+..++.+.+..|.+.            ...|..++......
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            888887777778888888888888888776443446777777888777766521            12233344444444


Q ss_pred             EEEcccccccccCCccccCCCCCcEE--Ec-ccccCCCCCCc-cccCCCCCCEEEcccCcccccCCccCCCCCCCCeeec
Q 043943          231 NLNMSMNHLSGAIPSSIGNVRNLRSL--FL-YSNELSGSIPK-EIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYL  306 (775)
Q Consensus       231 ~L~l~~n~~~~~~~~~l~~l~~L~~L--~l-~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  306 (775)
                      -..+.+.++....+..|...  ++.+  .+ +.+...++.|. .|..+++|+.|++++|+++++-+.+|.+...+++|.|
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             hHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            44444444443333322211  2222  11 22223333343 4778889999999999988888888888888999999


Q ss_pred             cCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCC
Q 043943          307 YSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS  360 (775)
Q Consensus       307 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  360 (775)
                      ..|++.......|.++..|+.|+|++|+++...|.+|.....|.+|.+-.|.+.
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            988887666667888888899999999998888888888888888888888765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.7e-19  Score=200.31  Aligned_cols=267  Identities=27%  Similarity=0.315  Sum_probs=168.2

Q ss_pred             CCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEc
Q 043943          275 RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYL  354 (775)
Q Consensus       275 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  354 (775)
                      ..-..|+++++.++ .+|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|+++.. |..   .++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCc---ccccceeec
Confidence            44567888888887 4565554  378888888888874 443   246777777777777743 432   356777777


Q ss_pred             cCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCcccee
Q 043943          355 YRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHG  434 (775)
Q Consensus       355 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  434 (775)
                      ++|.+.. +|..   ...|+.|++++|.++.. |.                            ..++|+.|++++|++++
T Consensus       270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~----------------------------~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV----------------------------LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             cCCchhh-hhhc---hhhcCEEECcCCccccc-cc----------------------------cccccceeECCCCcccc
Confidence            7776652 3321   13445555555554421 11                            12456666666666654


Q ss_pred             ecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccC
Q 043943          435 QISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGT  514 (775)
Q Consensus       435 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  514 (775)
                      . |.   ...+|+.|++++|.+++ +|.   ...+|++|+|++|++++ +|..   .++|+.|++++|++.+ +|..   
T Consensus       317 L-p~---lp~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---  380 (788)
T PRK15387        317 L-PA---LPSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---  380 (788)
T ss_pred             C-CC---CcccccccccccCcccc-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---
Confidence            2 22   12346666677776663 342   12467777777777774 3432   3467777777777763 4532   


Q ss_pred             CCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEE
Q 043943          515 LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKL  594 (775)
Q Consensus       515 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  594 (775)
                      ..+|+.|++++|++++ +|..   .++|+.|++++|++++ +|...    .+|+.|++++|+++ .+|..++.++.|+.|
T Consensus       381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~----~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L  450 (788)
T PRK15387        381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP----SGLLSLSVYRNQLT-RLPESLIHLSSETTV  450 (788)
T ss_pred             ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch----hhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence            3567788888888774 3432   3567888888888774 55432    26777888888887 678888888888888


Q ss_pred             eCCCCcCcccCCccccC
Q 043943          595 NLSYNQLSGFIPNCFED  611 (775)
Q Consensus       595 ~ls~n~l~~~~p~~l~~  611 (775)
                      +|++|++++..|..+..
T Consensus       451 dLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        451 NLEGNPLSERTLQALRE  467 (788)
T ss_pred             ECCCCCCCchHHHHHHH
Confidence            88888888877766633

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=5.6e-19  Score=196.17  Aligned_cols=181  Identities=29%  Similarity=0.434  Sum_probs=83.0

Q ss_pred             CccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcc
Q 043943          204 NLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLS  283 (775)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  283 (775)
                      +|+.|++++|+++.. |.   ..++|+.|++++|.+.+ +|..   ...|+.|++++|.+++ +|..   ..+|++|+++
T Consensus       283 ~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS  350 (788)
T PRK15387        283 GLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVS  350 (788)
T ss_pred             hcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecC
Confidence            344455555544422 22   12345555555555442 2221   1234445555555542 3321   1345555555


Q ss_pred             cCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCc
Q 043943          284 INRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSI  363 (775)
Q Consensus       284 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  363 (775)
                      +|++++ +|..   ..+|+.|++++|.++. +|..   ..+|+.|++++|++++ +|..   .++|+.|++++|.+.. +
T Consensus       351 ~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-I  417 (788)
T PRK15387        351 DNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-L  417 (788)
T ss_pred             CCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-C
Confidence            555552 2221   2344455555555542 3321   1345555555555553 2221   2345555555555543 3


Q ss_pred             hhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccch
Q 043943          364 PQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISE  413 (775)
Q Consensus       364 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  413 (775)
                      |..   ..+|+.|++++|.++ .+|..+.++++|+.|++++|.+++..+.
T Consensus       418 P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        418 PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            322   124455555555555 3455555566666666666666554443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=7.4e-19  Score=196.77  Aligned_cols=246  Identities=26%  Similarity=0.440  Sum_probs=131.4

Q ss_pred             CCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEecc
Q 043943          108 KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLS  187 (775)
Q Consensus       108 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  187 (775)
                      +...|+++++.++ .+|..+.  ++|+.|+|++|.++ .+|..+.  ++|++|++++|.++. +|..+.  ++|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence            3455566555555 3444332  35556666666555 3444332  355666666665553 233222  256666666


Q ss_pred             CCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCC
Q 043943          188 LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI  267 (775)
Q Consensus       188 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  267 (775)
                      +|.+. .+|..+.  .+|+.|++++|+++. +|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++++|.++. +
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence            66555 3444332  356666666666653 344332  35666666666665 2333322  356666666666653 3


Q ss_pred             CccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCC
Q 043943          268 PKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLR  347 (775)
Q Consensus       268 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  347 (775)
                      |..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|++|++++|+++. +|..+.  .
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~  388 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--A  388 (754)
T ss_pred             Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--H
Confidence            4332  2466666666666663 343332  46666777666665 3444332  466777777776664 333332  3


Q ss_pred             cCcEEEccCCcCCCCchh----hccCCCCCcEEEeccceec
Q 043943          348 NLRLLYLYRNELSGSIPQ----AIGNLVELVSLLLGFNYFR  384 (775)
Q Consensus       348 ~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~  384 (775)
                      .|+.|++++|++. .+|.    ....++.+..+++.+|.+.
T Consensus       389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            5667777777665 2332    3334466677777777665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.4e-17  Score=186.65  Aligned_cols=245  Identities=27%  Similarity=0.378  Sum_probs=105.4

Q ss_pred             CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943           85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN  164 (775)
Q Consensus        85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  164 (775)
                      ...|+++++.++ .+|..+.  ++|+.|+|++|.++ .+|..+.  .+|++|++++|.++ .+|..+.  .+|+.|++++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            445555555444 2333332  24555555555554 2333322  34555555555544 3333332  2455555555


Q ss_pred             CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCC
Q 043943          165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP  244 (775)
Q Consensus       165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  244 (775)
                      |.+.. +|..+.  .+|+.|++++|++. .+|..+.  ++|+.|++++|++++. |..+.  ++|+.|++++|.+.. +|
T Consensus       251 N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        251 NRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CC
Confidence            55442 233222  24555555555544 2333322  2455555555554432 22221  244555555555442 23


Q ss_pred             ccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCC
Q 043943          245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKC  324 (775)
Q Consensus       245 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  324 (775)
                      ..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+  .++|+.|++++|.++. +|..+.  ..
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~s  389 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP--AA  389 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH--HH
Confidence            222  1345555555555542 333321  44555555555544 233322  1345555555555542 233222  23


Q ss_pred             CCeeeCcCCcCcCccCC----cCCCCCcCcEEEccCCcCC
Q 043943          325 LFDLELSMNNLTGVIPS----SIGNLRNLRLLYLYRNELS  360 (775)
Q Consensus       325 L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~  360 (775)
                      |+.|++++|++.. +|.    .+..++.+..|++.+|++.
T Consensus       390 L~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        390 LQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence            5555555555542 222    1222344455555555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=7e-19  Score=184.17  Aligned_cols=280  Identities=22%  Similarity=0.264  Sum_probs=160.8

Q ss_pred             eeeCcCCcCcC-ccCCcCCCCCcCcEEEccCCcCCCC----chhhccCCCCCcEEEeccceecccCCccCcCCCccccee
Q 043943          327 DLELSMNNLTG-VIPSSIGNLRNLRLLYLYRNELSGS----IPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVR  401 (775)
Q Consensus       327 ~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  401 (775)
                      .|+|..+.+++ .....+..+..|+.++++++.++..    ++..+...+.++.++++++.+.+. +..+          
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~~~----------   70 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PRGL----------   70 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-chHH----------
Confidence            35566666652 2333444556677777777776432    334444555566666666554320 0000          


Q ss_pred             ccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCC---CCCEEEcccCccccc----CCccccCC-CCCcEE
Q 043943          402 MNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP---QLGTLDFSVNNITGS----IPPEIGNS-SKLQVL  473 (775)
Q Consensus       402 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~~L~l~~n~l~~~----~~~~~~~~-~~L~~L  473 (775)
                             ..++.. +..+++|+.|++++|.+.+..+..+..+.   +|++|++++|.+++.    +...+..+ ++|+.|
T Consensus        71 -------~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L  142 (319)
T cd00116          71 -------QSLLQG-LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL  142 (319)
T ss_pred             -------HHHHHH-HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence                   011111 13355666666666655443333333333   377777777766531    22234455 677777


Q ss_pred             EccCCCccCc----CChhhhcCCCCCEEEcCCCcCccc----CCcCccCCCCCCEEECCCCcccccC----CccccCcCC
Q 043943          474 NLSSNHIGGK----IPMELGRLSSLNKLILNKNQLFGS----LPPEIGTLTELELLDLSENRLSNAI----PGSLGNLLK  541 (775)
Q Consensus       474 ~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~  541 (775)
                      ++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..    +..+..+++
T Consensus       143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~  222 (319)
T cd00116         143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS  222 (319)
T ss_pred             EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence            7777777632    233455667777777777777632    2223445567888888887775432    234556777


Q ss_pred             CCEEEccCCcCccCCchhHHhhh----ccccEEECcCCcCcc----cCCccccCCCCCcEEeCCCCcCccc----CCccc
Q 043943          542 VHYLNLSNNEFSHKIPTQFEKLQ----LQLSELDLSQNFLEG----EIPSQICNMESLVKLNLSYNQLSGF----IPNCF  609 (775)
Q Consensus       542 L~~L~Ls~n~l~~~~~~~~~~l~----~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~ls~n~l~~~----~p~~l  609 (775)
                      |++|++++|.+++.....+....    ..|+.|++++|.++.    .+...+..++.|+.+++++|.++..    ....+
T Consensus       223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~  302 (319)
T cd00116         223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL  302 (319)
T ss_pred             CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence            88888888887764444443321    378888888887762    3344556667888888888888755    33333


Q ss_pred             cCC-CCCCEEeCCCCcc
Q 043943          610 EDM-HGLSSIDISYNRL  625 (775)
Q Consensus       610 ~~l-~~L~~l~ls~n~l  625 (775)
                      ... ..|+.+++.+|++
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         303 LEPGNELESLWVKDDSF  319 (319)
T ss_pred             hhcCCchhhcccCCCCC
Confidence            333 5677888877764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2.6e-19  Score=187.45  Aligned_cols=86  Identities=29%  Similarity=0.370  Sum_probs=35.3

Q ss_pred             CCccEEEcccccCccc----cCccCCCCCCCCEEEccccccccc----CCccccCCCCCcEEEcccccCCCC----CCcc
Q 043943          203 TNLVTLHLFNNSLSGF----IPSTLGKLKCLSNLNMSMNHLSGA----IPSSIGNVRNLRSLFLYSNELSGS----IPKE  270 (775)
Q Consensus       203 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~  270 (775)
                      ++|+.|++++|.+++.    ....+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+++.    +...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            4445555555444411    122333344455555544444321    111222334455555554444322    1122


Q ss_pred             ccCCCCCCEEEcccCccc
Q 043943          271 IGNLRSLSNLDLSINRLN  288 (775)
Q Consensus       271 l~~l~~L~~L~l~~n~~~  288 (775)
                      +..+++|++|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            334445555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=6.9e-19  Score=151.28  Aligned_cols=158  Identities=31%  Similarity=0.471  Sum_probs=106.2

Q ss_pred             ccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCC
Q 043943           78 SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ  157 (775)
Q Consensus        78 ~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  157 (775)
                      .+..+.+++.|.||+|+++ .+|..+..+.+|++|++++|+++ .+|.+++.+++|++|+++-|++. ..|..|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            3445667778888888887 55667888888888888888887 67778888888888888888776 778888888888


Q ss_pred             CEEEcccCcCcc-cCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccc
Q 043943          158 SLLSLYNNSLSG-YIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM  236 (775)
Q Consensus       158 ~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  236 (775)
                      +.||+.+|++.. ..|..|..++.|+.|.++.|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence            888887777653 34555555555666666665554 44445555555555555555544 3344455555555555555


Q ss_pred             cccc
Q 043943          237 NHLS  240 (775)
Q Consensus       237 n~~~  240 (775)
                      |+++
T Consensus       183 nrl~  186 (264)
T KOG0617|consen  183 NRLT  186 (264)
T ss_pred             ceee
Confidence            5554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=3.6e-18  Score=146.90  Aligned_cols=164  Identities=33%  Similarity=0.531  Sum_probs=105.2

Q ss_pred             ccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCC
Q 043943          103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLS  182 (775)
Q Consensus       103 ~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  182 (775)
                      +.++.+.+.|.||+|+++ .+|..++.+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|.+.              
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--------------   92 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--------------   92 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--------------
Confidence            345667777888888887 55666778888888888888877 66766777666666666655443              


Q ss_pred             EEeccCCcCcccCCcccCCCCCccEEEcccccCc-cccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccc
Q 043943          183 TLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS-GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSN  261 (775)
Q Consensus       183 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  261 (775)
                                 ..|..|+.++.|++||+.+|++. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|
T Consensus        93 -----------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen   93 -----------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             -----------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence                       34445555555555555555543 334555666666666666666665 55666666666666666666


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcccccCCccCC
Q 043943          262 ELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIG  296 (775)
Q Consensus       262 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~  296 (775)
                      .+. .+|..++.++.|++|.+.+|+++ .+|..++
T Consensus       161 dll-~lpkeig~lt~lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  161 DLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             chh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence            665 56666666777777777777766 4444443

>PLN03150 hypothetical protein; Provisional

Probab=99.52  E-value=9.4e-14  Score=155.74  Aligned_cols=148  Identities=32%  Similarity=0.521  Sum_probs=101.2

Q ss_pred             CCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCC----CcccceeeCCC-----CCEEEEEcCCCCCccccCcc
Q 043943            7 SDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNL----CAWSGIYCNHD-----ERVVGINLTTTSLNGTLDEF   77 (775)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~----c~w~gv~c~~~-----~~v~~l~l~~~~~~~~~~~~   77 (775)
                      ...++|.+||+++|+++.. +..  .+|.       ++.|    |.|.|+.|...     ..|+.|+|+++.+.|.+| .
T Consensus       368 ~t~~~~~~aL~~~k~~~~~-~~~--~~W~-------g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip-~  436 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGL-PLR--FGWN-------GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-N  436 (623)
T ss_pred             ccCchHHHHHHHHHHhcCC-ccc--CCCC-------CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC-H
Confidence            3456789999999999964 322  4797       2233    37999999521     147777777777777776 5


Q ss_pred             ccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCC-CC
Q 043943           78 SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNL-SK  156 (775)
Q Consensus        78 ~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l-~~  156 (775)
                      .+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..++++++|++|+|++|.+.+.+|..+... .+
T Consensus       437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~  516 (623)
T PLN03150        437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH  516 (623)
T ss_pred             HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence            67777777777777777777777777777777777777777777777777777777777777777777777665542 23


Q ss_pred             CCEEEcccC
Q 043943          157 QSLLSLYNN  165 (775)
Q Consensus       157 L~~L~l~~n  165 (775)
                      +..+++.+|
T Consensus       517 ~~~l~~~~N  525 (623)
T PLN03150        517 RASFNFTDN  525 (623)
T ss_pred             CceEEecCC
Confidence            444444444

>PLN03150 hypothetical protein; Provisional

Probab=99.44  E-value=3.8e-13  Score=150.88  Aligned_cols=117  Identities=32%  Similarity=0.578  Sum_probs=78.5

Q ss_pred             CCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCC
Q 043943          542 VHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDIS  621 (775)
Q Consensus       542 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls  621 (775)
                      ++.|+|++|.+.+.+|..+..+. +|+.|+|++|.++|.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            55667777777767776666666 67777777777777777777777777777777777777777777777777777777


Q ss_pred             CCcccccCCCCC--cCCCCCccccCCCcCCCCCCCCCCCCC
Q 043943          622 YNRLQGPVPFSK--AFRDAPAEALQGNRGLCGDDKGLSSCK  660 (775)
Q Consensus       622 ~n~l~~~~p~~~--~~~~~~~~~~~gn~~lc~~~~~~~~c~  660 (775)
                      +|+++|.+|..-  .........+.+|+.+|+. +....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCC-CCCCCCc
Confidence            777777776431  1122234467788889984 3445664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=2.5e-13  Score=139.08  Aligned_cols=191  Identities=34%  Similarity=0.484  Sum_probs=139.7

Q ss_pred             CcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCC
Q 043943          422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNK  501 (775)
Q Consensus       422 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  501 (775)
                      -...|++.|++. .+|..++.|-.|+.+.+..|.+. .+|..+.++..|++|||+.|+++ ..|..+..|+ |+.|.+++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            345666777765 56667777777777888777776 67777888888888888888887 4555555554 78888888


Q ss_pred             CcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccC
Q 043943          502 NQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEI  581 (775)
Q Consensus       502 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~  581 (775)
                      |+++ .+|..++....|..||.+.|.+. ..|..++.+.+|+.|.+..|++. ..|..+..+  .|..||+|+|+++ .+
T Consensus       153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLIRLDFSCNKIS-YL  226 (722)
T ss_pred             Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--ceeeeecccCcee-ec
Confidence            8887 77778888888888888888887 45666788888888888888876 456667766  4888888888888 78


Q ss_pred             CccccCCCCCcEEeCCCCcCcccCCccc---cCCCCCCEEeCCCC
Q 043943          582 PSQICNMESLVKLNLSYNQLSGFIPNCF---EDMHGLSSIDISYN  623 (775)
Q Consensus       582 p~~l~~l~~L~~L~ls~n~l~~~~p~~l---~~l~~L~~l~ls~n  623 (775)
                      |-+|.+|+.|++|-|.+|.+... |..+   ....-.++|+..-+
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             chhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence            88888888888888888888743 3322   22233455555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=1.8e-12  Score=132.85  Aligned_cols=174  Identities=33%  Similarity=0.460  Sum_probs=103.4

Q ss_pred             CCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEE
Q 043943           82 FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLS  161 (775)
Q Consensus        82 l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  161 (775)
                      +..-...|++.|++. ++|..+..|..|+.+.|+.|.+. .+|..+.++..|.+|+|+.|++. .+|..++.|+      
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp------  144 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP------  144 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc------
Confidence            334445566666655 45555555555666666666555 45555666666666666666655 4455554443      


Q ss_pred             cccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc
Q 043943          162 LYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG  241 (775)
Q Consensus       162 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  241 (775)
                                         |+.|-+++|+++ .+|..++...+|..|+.+.|.+. .+|..++++.+|+.|.+..|++. 
T Consensus       145 -------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-  202 (722)
T KOG0532|consen  145 -------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-  202 (722)
T ss_pred             -------------------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-
Confidence                               455555555554 45555555666666666666665 34555666666666666666665 


Q ss_pred             cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943          242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN  288 (775)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  288 (775)
                      .+|..+.. -.|..||++.|+++ .+|-.|.+|+.|++|.|.+|.+.
T Consensus       203 ~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  203 DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            45555553 34666777777665 56666777777777777777665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.11  E-value=4.1e-11  Score=137.11  Aligned_cols=128  Identities=31%  Similarity=0.357  Sum_probs=83.4

Q ss_pred             CCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCC--CcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCE
Q 043943           58 ERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNE--LFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSE  135 (775)
Q Consensus        58 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~--~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~  135 (775)
                      ..++++.+-++.+....   .-...+.|+.|-+.+|.  +.......|..++.|++|||++|.--+.+|..++++-+|||
T Consensus       523 ~~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhcc---CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            34555555444433211   11234467777777775  44344445677788888888877665677877888888888


Q ss_pred             EECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCC
Q 043943          136 LSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLN  189 (775)
Q Consensus       136 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  189 (775)
                      |+++++.+. .+|..+.++..|.+|++..+.....++.....+++|++|.+...
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            888887777 67777777777777777776655555666666777777776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=1.8e-10  Score=124.11  Aligned_cols=179  Identities=37%  Similarity=0.574  Sum_probs=86.0

Q ss_pred             CCCCCEEECCCccccccCcccccCCC-CCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEE
Q 043943          130 LSFLSELSLYSNCLNGSIPQSLGNLS-KQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTL  208 (775)
Q Consensus       130 l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  208 (775)
                      ++.++.|++.+|.++ .++....... +|+.|++++|++... +..+..+++|+.|+++.|++. .+|...+..+.|+.|
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            344445555554444 3333333332 455555555444422 233444555555555555544 223222244555555


Q ss_pred             EcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943          209 HLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN  288 (775)
Q Consensus       209 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  288 (775)
                      ++++|++.. +|........|++|.+++|.+. ..+..+.++.++..+.+.+|.+. ..+..+..+++++.|++++|.++
T Consensus       192 ~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         192 DLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence            555555542 2333333344555555555322 33344555555555555555554 22444555555666666666655


Q ss_pred             ccCCccCCCCCCCCeeeccCccccCCCC
Q 043943          289 GVIPSSIGNSNNLSILYLYSNQLSGSIP  316 (775)
Q Consensus       289 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~  316 (775)
                      ....  +..+.+++.|+++++.+....+
T Consensus       269 ~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         269 SISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cccc--ccccCccCEEeccCccccccch
Confidence            3322  5555666666666665554433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=5.3e-11  Score=112.49  Aligned_cols=133  Identities=29%  Similarity=0.275  Sum_probs=75.4

Q ss_pred             ccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCC
Q 043943          174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL  253 (775)
Q Consensus       174 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  253 (775)
                      .+..++.|+++|+++|.++ .+..+..-.++++.|+++.|.+...  ..+..+++|+.|||++|.++ .+..+-.++.+.
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            3444556777777777665 3444455566777777777776643  33666677777777777665 333444456666


Q ss_pred             cEEEcccccCCCCCCccccCCCCCCEEEcccCcccccC-CccCCCCCCCCeeeccCcccc
Q 043943          254 RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVI-PSSIGNSNNLSILYLYSNQLS  312 (775)
Q Consensus       254 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~  312 (775)
                      ++|.|+.|.+..  -..+..+-+|..||+++|+|.... ...++++|.|+.+.+.+|.+.
T Consensus       355 KtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  355 KTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            666666666542  123555566666666666654211 123444444444444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=3.3e-10  Score=121.99  Aligned_cols=177  Identities=41%  Similarity=0.560  Sum_probs=74.4

Q ss_pred             CCCCCEEEcccCcCcccCCcccCCCC-CCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEE
Q 043943          154 LSKQSLLSLYNNSLSGYIPPVIGNLI-SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNL  232 (775)
Q Consensus       154 l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  232 (775)
                      ++.++.|++.+|.++.+ +....... +|+.|++++|.+. .+|..+..+++|+.|++++|++... +.....++.|+.|
T Consensus       115 ~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhhe
Confidence            34444444444444432 22222232 4444555544443 2222344444455555554444422 2222244444455


Q ss_pred             EcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcccc
Q 043943          233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS  312 (775)
Q Consensus       233 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  312 (775)
                      ++++|.+. .+|........|++|.+++|... ..+..+..+.++..+.+.+|++.. .+..+..+++++.|++++|.++
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence            55544444 33333333333444444444322 223334444444444444444431 1333444444445555544444


Q ss_pred             CCCCccCCCCCCCCeeeCcCCcCcCc
Q 043943          313 GSIPKEIGNLKCLFDLELSMNNLTGV  338 (775)
Q Consensus       313 ~~~~~~~~~l~~L~~L~l~~n~l~~~  338 (775)
                      ... . +..+.+++.|++++|.+...
T Consensus       269 ~i~-~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         269 SIS-S-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccc-c-ccccCccCEEeccCcccccc
Confidence            221 1 44444445555544444433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=1.9e-11  Score=118.52  Aligned_cols=244  Identities=21%  Similarity=0.170  Sum_probs=131.8

Q ss_pred             CCCEEEEEcCCCCCccccC---ccccCCCCCCCEEECCCCC---CcccCcc-------cccCCCCCCEEeCcCCCCCCCC
Q 043943           57 DERVVGINLTTTSLNGTLD---EFSFSSFPDLLFLNLFNNE---LFGIIPP-------QISQLFKLQYLDLSANKLSGKI  123 (775)
Q Consensus        57 ~~~v~~l~l~~~~~~~~~~---~~~~~~l~~L~~L~ls~~~---~~~~~~~-------~~~~l~~L~~L~ls~n~~~~~~  123 (775)
                      ...++.++|+++.+...-.   ...+.+.++|+..++|+.-   ....+|.       ++..+++|++||||+|.+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            3467788888877653211   1345566778887777642   2223443       3456678888888888775444


Q ss_pred             chh----ccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCccc----C
Q 043943          124 PPE----IGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS----V  195 (775)
Q Consensus       124 p~~----~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~----~  195 (775)
                      +..    +..+..|++|.|.+|.+.-.....++.  .|..|.  .       ......-+.|+++...+|.+...    +
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~ga~~~  177 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENGGATAL  177 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeeccccccccHHHH
Confidence            443    356777788888777653111111111  000000  0       01122234566666666655321    1


Q ss_pred             CcccCCCCCccEEEcccccCcc----ccCccCCCCCCCCEEEcccccccc----cCCccccCCCCCcEEEcccccCCCCC
Q 043943          196 PFFLGNLTNLVTLHLFNNSLSG----FIPSTLGKLKCLSNLNMSMNHLSG----AIPSSIGNVRNLRSLFLYSNELSGSI  267 (775)
Q Consensus       196 ~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~  267 (775)
                      ...|...+.|+.+.+..|.+..    .+...|..+++|++|+|.+|.++.    .+...+..+++|+.|++++|.+...-
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence            1234455566666666665431    123445666667777776665542    22334455666777777777665433


Q ss_pred             Cccc-----cCCCCCCEEEcccCccccc----CCccCCCCCCCCeeeccCccc
Q 043943          268 PKEI-----GNLRSLSNLDLSINRLNGV----IPSSIGNSNNLSILYLYSNQL  311 (775)
Q Consensus       268 ~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l  311 (775)
                      ..+|     ...++|+.|.+.+|.++..    +...+...+.|..|+|+.|.+
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            3222     1356777777777776532    112234466777777777777

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.02  E-value=2.5e-10  Score=118.88  Aligned_cols=50  Identities=36%  Similarity=0.636  Sum_probs=46.5

Q ss_pred             ccccccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943          724 LEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ  773 (775)
Q Consensus       724 ~~~~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~  773 (775)
                      ..+.|+|+||++||++|+++++||+||||.||||.++||+.||||++...
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~  110 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSN  110 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCC
Confidence            34679999999999999999999999999999999999999999999764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=2.4e-10  Score=130.91  Aligned_cols=153  Identities=29%  Similarity=0.357  Sum_probs=108.0

Q ss_pred             cCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCC--CCCCCchhccCCCCCCEEECCCccccccCcccccCCCC
Q 043943           79 FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANK--LSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSK  156 (775)
Q Consensus        79 ~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~--~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  156 (775)
                      ..+....|...+.+|.+. .++.. ..++.|++|-+..|.  +....+..|..++.|++|||++|.--+.+|..++.+-+
T Consensus       519 ~~~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             ccchhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            344567788888887765 23332 245579899888885  44344445788999999999988777788999999999


Q ss_pred             CCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCc--cccCccCCCCCCCCEEEc
Q 043943          157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS--GFIPSTLGKLKCLSNLNM  234 (775)
Q Consensus       157 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l  234 (775)
                      |++|+++++.+. .+|..+.++..|.+|++..+......+.....+++||+|.+......  ...-..+.++.+|+.+..
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999999998887 67888888889999998887655455666666888888888765421  222233344445554444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=5.5e-11  Score=118.50  Aligned_cols=209  Identities=23%  Similarity=0.215  Sum_probs=122.9

Q ss_pred             cCCCCCCEEeCcCCCCCCCCc-hhccCCCCCCEEECCCccccccCc--ccccCCCCCCEEEcccCcCcccCCccc-CCCC
Q 043943          104 SQLFKLQYLDLSANKLSGKIP-PEIGQLSFLSELSLYSNCLNGSIP--QSLGNLSKQSLLSLYNNSLSGYIPPVI-GNLI  179 (775)
Q Consensus       104 ~~l~~L~~L~ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~  179 (775)
                      .++.+|+...|.++......- .....|++++.|||+.|-+....+  .-...+++|+.|+++.|.+........ ..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            355666666666665542111 234556667777777665553222  223456666777776666543322111 2456


Q ss_pred             CCCEEeccCCcCcccC-CcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCC--ccccCCCCCcEE
Q 043943          180 SLSTLDLSLNQLIGSV-PFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP--SSIGNVRNLRSL  256 (775)
Q Consensus       180 ~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L  256 (775)
                      +|+.|.++.|.++... ......+++|+.|++..|....+......-+..|++|+|++|.+- ..+  ...+.++.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence            7777777777665321 122346677777777777533333344455667778888777765 222  345667778888


Q ss_pred             EcccccCCCC-CCcc-----ccCCCCCCEEEcccCccccc-CCccCCCCCCCCeeeccCccccC
Q 043943          257 FLYSNELSGS-IPKE-----IGNLRSLSNLDLSINRLNGV-IPSSIGNSNNLSILYLYSNQLSG  313 (775)
Q Consensus       257 ~l~~n~~~~~-~~~~-----l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~  313 (775)
                      +++.+.+.+. .|+.     ...+++|++|++..|++... .-..+..+++|+.|.+..|.++.
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            8877777653 2222     24568888888888887421 11234556777777877777763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.00  E-value=2.4e-11  Score=117.76  Aligned_cols=217  Identities=22%  Similarity=0.202  Sum_probs=99.0

Q ss_pred             cccCCCCCCEEeCcCCCCCCC----CchhccCCCCCCEEECCCcccccc----CcccccCCCCCCEEEcccCcCcccCCc
Q 043943          102 QISQLFKLQYLDLSANKLSGK----IPPEIGQLSFLSELSLYSNCLNGS----IPQSLGNLSKQSLLSLYNNSLSGYIPP  173 (775)
Q Consensus       102 ~~~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~  173 (775)
                      .+..+..+++++||+|.+...    +-..+.+.++|+..+++.- ++|.    +|..+.                 ....
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~-----------------~l~~   86 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALK-----------------MLSK   86 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHH-----------------HHHH
Confidence            445566777777777766432    2233455666777766642 3322    222110                 0112


Q ss_pred             ccCCCCCCCEEeccCCcCcccCCc----ccCCCCCccEEEcccccCccccC-------------ccCCCCCCCCEEEccc
Q 043943          174 VIGNLISLSTLDLSLNQLIGSVPF----FLGNLTNLVTLHLFNNSLSGFIP-------------STLGKLKCLSNLNMSM  236 (775)
Q Consensus       174 ~l~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~-------------~~l~~l~~L~~L~l~~  236 (775)
                      .+..+++|++|+||.|-+.-..+.    .+.++..|+.|.|.+|.+.-...             .....-+.|+++...+
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            233444555555555543322221    12344555555555554431111             1122234556666555


Q ss_pred             cccccc----CCccccCCCCCcEEEcccccCCCC----CCccccCCCCCCEEEcccCccccc----CCccCCCCCCCCee
Q 043943          237 NHLSGA----IPSSIGNVRNLRSLFLYSNELSGS----IPKEIGNLRSLSNLDLSINRLNGV----IPSSIGNSNNLSIL  304 (775)
Q Consensus       237 n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L  304 (775)
                      |++...    +...|...+.|+.+.+..|.|...    +...|..|++|+.|||..|.++..    +...+..+++|++|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            554321    112234445566666655554321    122345566666666666655432    12234445556666


Q ss_pred             eccCccccCCCCccC-----CCCCCCCeeeCcCCcCc
Q 043943          305 YLYSNQLSGSIPKEI-----GNLKCLFDLELSMNNLT  336 (775)
Q Consensus       305 ~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~  336 (775)
                      ++++|.+......++     ...|.|+.|.+.+|.++
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            666655543322211     12345555555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=1.1e-10  Score=110.27  Aligned_cols=129  Identities=29%  Similarity=0.326  Sum_probs=73.1

Q ss_pred             CCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEE
Q 043943          419 YPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLI  498 (775)
Q Consensus       419 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  498 (775)
                      +..|+++|+++|.++ .+..+..-.|.++.|++++|.+...  ..+..+++|+.||||+|.++ .+..+=..+-++++|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            345666666666665 3444555566666777776666633  22666666777777766665 2333334556666666


Q ss_pred             cCCCcCcccCCcCccCCCCCCEEECCCCcccccC-CccccCcCCCCEEEccCCcCc
Q 043943          499 LNKNQLFGSLPPEIGTLTELELLDLSENRLSNAI-PGSLGNLLKVHYLNLSNNEFS  553 (775)
Q Consensus       499 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~  553 (775)
                      |++|.+...  ..+..+.+|..||+++|+|.... ...+++++.|+.+.|.+|.+.
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            666665422  33455566666666666664321 233455555555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=9.8e-10  Score=100.42  Aligned_cols=126  Identities=29%  Similarity=0.348  Sum_probs=42.3

Q ss_pred             hcCCCCCEEEcCCCcCcccCCcCcc-CCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHH-hhhcc
Q 043943          489 GRLSSLNKLILNKNQLFGSLPPEIG-TLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFE-KLQLQ  566 (775)
Q Consensus       489 ~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~  566 (775)
                      .++.++++|+|++|.++. + +.++ .+.+|+.|++++|.++..  +.+..++.|++|++++|+++.. ...+. .++ +
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp-~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLP-N   89 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-T-T
T ss_pred             cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCC-c
Confidence            344566777777777653 2 2344 466777777777777654  2466677778888888877753 33343 345 7


Q ss_pred             ccEEECcCCcCccc-CCccccCCCCCcEEeCCCCcCcccCC---ccccCCCCCCEEeC
Q 043943          567 LSELDLSQNFLEGE-IPSQICNMESLVKLNLSYNQLSGFIP---NCFEDMHGLSSIDI  620 (775)
Q Consensus       567 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l~l  620 (775)
                      |++|++++|++... .-..+..+++|+.|++.+|+++...-   ..+..+++|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            88888888877532 12455667778888888877764421   12455677777764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.2e-10  Score=116.24  Aligned_cols=40  Identities=28%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             CCCCCCEEECCCCccccc-CCccccCcCCCCEEEccCCcCc
Q 043943          514 TLTELELLDLSENRLSNA-IPGSLGNLLKVHYLNLSNNEFS  553 (775)
Q Consensus       514 ~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~  553 (775)
                      ..++|++|++..|++..- .-..+..+++|+.|.+..|.++
T Consensus       299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            445566666666655321 1122344455666666666664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=4.8e-10  Score=102.46  Aligned_cols=109  Identities=29%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             cCCCCCCCEEECCCCCCcccCccccc-CCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccc-cCCCC
Q 043943           79 FSSFPDLLFLNLFNNELFGIIPPQIS-QLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSL-GNLSK  156 (775)
Q Consensus        79 ~~~l~~L~~L~ls~~~~~~~~~~~~~-~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~  156 (775)
                      +.+...+++|+|++|.|..+  +.++ .+.+|+.|++++|.++.. + .+..+++|++|++++|+++.. +..+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence            34445667777777777633  2343 466777777777777633 2 466677777777777777633 3333 35667


Q ss_pred             CCEEEcccCcCcccC-CcccCCCCCCCEEeccCCcCc
Q 043943          157 QSLLSLYNNSLSGYI-PPVIGNLISLSTLDLSLNQLI  192 (775)
Q Consensus       157 L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~  192 (775)
                      |++|++++|++.... -..+..+++|++|++.+|.+.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            777777777665432 234455566666666666554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=3.4e-10  Score=121.83  Aligned_cols=198  Identities=26%  Similarity=0.255  Sum_probs=85.5

Q ss_pred             cCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccC-ccCCCCCCCC
Q 043943          152 GNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIP-STLGKLKCLS  230 (775)
Q Consensus       152 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~  230 (775)
                      ..+++|++|++++|.|+.+  ..+..++.|+.|++++|.+..  ...+..++.|+.+++++|.+..+.+ . ...+.+|+
T Consensus       115 ~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~  189 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLE  189 (414)
T ss_pred             hhhhcchheeccccccccc--cchhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchH
Confidence            3344444444444444333  122333334444444444431  1123334455555555555443322 1 34445555


Q ss_pred             EEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCC--CCEEEcccCcccccCCccCCCCCCCCeeeccC
Q 043943          231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRS--LSNLDLSINRLNGVIPSSIGNSNNLSILYLYS  308 (775)
Q Consensus       231 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  308 (775)
                      .+++.+|.+...  ..+..+..+..+++..|.++..-+  +..+..  |+.+++++|++... +..+..+.++..+++.+
T Consensus       190 ~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  190 ELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSS  264 (414)
T ss_pred             HHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhh
Confidence            555555554311  222333334444555554442211  112222  55555655555422 13344555555666665


Q ss_pred             ccccCCCCccCCCCCCCCeeeCcCCcCcCc---cCC-cCCCCCcCcEEEccCCcCCC
Q 043943          309 NQLSGSIPKEIGNLKCLFDLELSMNNLTGV---IPS-SIGNLRNLRLLYLYRNELSG  361 (775)
Q Consensus       309 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~-~~~~~~~L~~L~l~~n~l~~  361 (775)
                      |.+...  ..+...+.+..+....+.+...   ... .....+.++.+.+..|....
T Consensus       265 n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  265 NRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             cccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            555432  1233334444444555444321   111 13345566666666665544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.77  E-value=9.3e-09  Score=70.06  Aligned_cols=42  Identities=33%  Similarity=0.826  Sum_probs=30.7

Q ss_pred             cHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCC-CCCCCcccceeeC
Q 043943            9 STEEARALLKWKTSLQIHSRSLLPSWTLSPVNAT-KKNLCAWSGIYCN   55 (775)
Q Consensus         9 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~c~w~gv~c~   55 (775)
                      +++|++||++||+++..+|.+.+.+|.     .. ..+||.|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~-----~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWN-----PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT-------TT--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCC-----CcCCCCCeeeccEEeC
Confidence            468999999999999976778999998     23 3799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=8.7e-10  Score=118.66  Aligned_cols=222  Identities=30%  Similarity=0.366  Sum_probs=104.8

Q ss_pred             ccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCC
Q 043943          151 LGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS  230 (775)
Q Consensus       151 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  230 (775)
                      +..+++|+.|++.+|.+..+.. .+..+++|++|++++|.++...+  +..++.|+.|++.+|.+..+  ..+..++.|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhh
Confidence            4444555555555555443321 14455666666666666553222  34455566666666665533  3444456666


Q ss_pred             EEEcccccccccCC-ccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCC--CCeeecc
Q 043943          231 NLNMSMNHLSGAIP-SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNN--LSILYLY  307 (775)
Q Consensus       231 ~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~  307 (775)
                      .+++++|.+....+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.++..-+  +..+..  |+.+++.
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~  240 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLS  240 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcc
Confidence            66666666553333 1 34555566666666655421  223333444444555555543211  112222  5566666


Q ss_pred             CccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCC---chh-hccCCCCCcEEEecccee
Q 043943          308 SNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGS---IPQ-AIGNLVELVSLLLGFNYF  383 (775)
Q Consensus       308 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~-~~~~l~~L~~L~l~~n~l  383 (775)
                      +|.+.. .+..+..+..+..+++.+|++....  .+...+.+..+....+.+...   ... .....+.+..+.+..|..
T Consensus       241 ~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  241 GNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             cCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence            665552 2233445555666666665554321  122333444444444443311   011 123344455555555544


Q ss_pred             cc
Q 043943          384 RG  385 (775)
Q Consensus       384 ~~  385 (775)
                      ..
T Consensus       318 ~~  319 (414)
T KOG0531|consen  318 RK  319 (414)
T ss_pred             cc
Confidence            43

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=1.6e-08  Score=75.77  Aligned_cols=59  Identities=41%  Similarity=0.598  Sum_probs=33.8

Q ss_pred             CCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCc
Q 043943          493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNE  551 (775)
Q Consensus       493 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  551 (775)
                      +|++|++++|+++...+..|..+++|++|++++|.+....+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444455555566666666666555555556666666666666554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=1.1e-08  Score=76.65  Aligned_cols=60  Identities=37%  Similarity=0.558  Sum_probs=50.0

Q ss_pred             cccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 043943          566 QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRL  625 (775)
Q Consensus       566 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l  625 (775)
                      +|+.|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            678888888888866667888888888888888888888888888888888888888864

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=3.9e-09  Score=100.11  Aligned_cols=176  Identities=22%  Similarity=0.153  Sum_probs=81.6

Q ss_pred             CCCEEeCcCCCCCCC-CchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCccc--CCcccCCCCCCCEE
Q 043943          108 KLQYLDLSANKLSGK-IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGY--IPPVIGNLISLSTL  184 (775)
Q Consensus       108 ~L~~L~ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L  184 (775)
                      .|++||||+..++.. +-..+..|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.++=-..  ..-.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            355666665554421 222245556666666666665555555555556666666655431111  11223455566666


Q ss_pred             eccCCcCcccCCcc-cC-CCCCccEEEcccccC---ccccCccCCCCCCCCEEEccccc-ccccCCccccCCCCCcEEEc
Q 043943          185 DLSLNQLIGSVPFF-LG-NLTNLVTLHLFNNSL---SGFIPSTLGKLKCLSNLNMSMNH-LSGAIPSSIGNVRNLRSLFL  258 (775)
Q Consensus       185 ~l~~n~~~~~~~~~-~~-~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l  258 (775)
                      ++++|.+....-.. +. --++|+.|+++++.-   ...+..-...+++|.+|||++|. ++......|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            66665443211110 11 113455555555431   11111222355666666666542 33223333445556666666


Q ss_pred             ccccCCCCCCcc---ccCCCCCCEEEcccC
Q 043943          259 YSNELSGSIPKE---IGNLRSLSNLDLSIN  285 (775)
Q Consensus       259 ~~n~~~~~~~~~---l~~l~~L~~L~l~~n  285 (775)
                      +.|..  ++|..   +...++|.+||+.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            55542  33332   334455555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=2.6e-08  Score=105.71  Aligned_cols=178  Identities=25%  Similarity=0.289  Sum_probs=101.9

Q ss_pred             CCCCCEEEcccCcccccC-CccccCCCCCcEEEccCCCccCc---CC--hh----------------hhc----------
Q 043943          443 FPQLGTLDFSVNNITGSI-PPEIGNSSKLQVLNLSSNHIGGK---IP--ME----------------LGR----------  490 (775)
Q Consensus       443 ~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~~---~~--~~----------------l~~----------  490 (775)
                      +++++.|.+-.-.-.+.. |-.+....+|++|.+.+|.+...   .+  ..                |..          
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~  162 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV  162 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh
Confidence            344555544332221111 44566788999999999987631   11  00                000          


Q ss_pred             CCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEE
Q 043943          491 LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSEL  570 (775)
Q Consensus       491 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L  570 (775)
                      ...|...+.++|.+. .+...+.-++.|+.|+|++|+++...  .+..|+.|++|||+.|.+.. +|. +..-.-.|+.|
T Consensus       163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~-l~~~gc~L~~L  237 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQ-LSMVGCKLQLL  237 (1096)
T ss_pred             hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccc-cchhhhhheee
Confidence            123445555556554 34445566677777777777776542  66777777777777777753 221 11111157777


Q ss_pred             ECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCC-ccccCCCCCCEEeCCCCcccc
Q 043943          571 DLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIP-NCFEDMHGLSSIDISYNRLQG  627 (775)
Q Consensus       571 ~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~l~ls~n~l~~  627 (775)
                      ++++|.++..  ..+.++.+|+.||+++|-+.+.-. .-+..+..|..|++.+|++.+
T Consensus       238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            7777776522  345667777777777777665422 123344566777777777765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=2.8e-08  Score=94.38  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=66.0

Q ss_pred             cccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCc-cccc-CCccccCCCCCcEE
Q 043943          396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN-ITGS-IPPEIGNSSKLQVL  473 (775)
Q Consensus       396 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L  473 (775)
                      .|+.++++...++..........|.+|+.|.+.++++.+.+...+..-.+|+.|+|+.|. ++.. ..-.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666666555555555667777777777777776666666666777777777653 2211 11235677778888


Q ss_pred             EccCCCccCcCChhh--hcCCCCCEEEcCCCc
Q 043943          474 NLSSNHIGGKIPMEL--GRLSSLNKLILNKNQ  503 (775)
Q Consensus       474 ~Ls~n~l~~~~~~~l--~~l~~L~~L~L~~n~  503 (775)
                      +|+.|.+........  .--++|+.|+|+|+.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r  297 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR  297 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence            888777654432221  113566777777653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.19  E-value=5.3e-08  Score=103.41  Aligned_cols=125  Identities=31%  Similarity=0.319  Sum_probs=63.3

Q ss_pred             CCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCc-CccCCCCCCEEEC
Q 043943          445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPP-EIGTLTELELLDL  523 (775)
Q Consensus       445 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l  523 (775)
                      .|.+.+++.|.+. .....+.-++.|+.|+|+.|++....  .+..|+.|+.|||++|.+. .+|. ....+. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            4455555555554 33445555566666666666655332  4555666666666666665 2222 112222 566666


Q ss_pred             CCCcccccCCccccCcCCCCEEEccCCcCccCCc-hhHHhhhccccEEECcCCcC
Q 043943          524 SENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIP-TQFEKLQLQLSELDLSQNFL  577 (775)
Q Consensus       524 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~L~~L~Ls~n~l  577 (775)
                      ++|.++..  ..+.++.+|..||++.|-+.+..- ..+..+. .|+.|+|.+|.+
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNPL  291 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCcc
Confidence            66655432  234455566666666665543211 1223333 555566666544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=6.4e-07  Score=85.40  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=28.1

Q ss_pred             CCCCCEEEcccCcccccC-CccCCCCCCCCeeeccCccccCC-CCccCCCCCCCCeeeCcCCcCc
Q 043943          274 LRSLSNLDLSINRLNGVI-PSSIGNSNNLSILYLYSNQLSGS-IPKEIGNLKCLFDLELSMNNLT  336 (775)
Q Consensus       274 l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~  336 (775)
                      ++++..+.+..|.+.... ...+..++.+..|+|+.+++..- ..+++.+++.|..|.++++++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            345555555555443221 12233344444555555554321 1123444555555555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=5.8e-07  Score=85.66  Aligned_cols=85  Identities=22%  Similarity=0.224  Sum_probs=39.5

Q ss_pred             CCCCCeeeCcCCcCcCc--cCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccC-CccCcCCCccc
Q 043943          322 LKCLFDLELSMNNLTGV--IPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI-PKNFKNLTNLV  398 (775)
Q Consensus       322 l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~  398 (775)
                      ++.++++++.+|.++..  +...+.++|.|+.|+++.|++...+...-....+|+.|-+.+..+.... ...+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            34455555555555432  2223445556666666655555333221123445555555554443321 12234455555


Q ss_pred             ceeccccc
Q 043943          399 RVRMNQNN  406 (775)
Q Consensus       399 ~L~l~~n~  406 (775)
                      .++++.|+
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            55555553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.07  E-value=4.3e-07  Score=85.36  Aligned_cols=213  Identities=21%  Similarity=0.181  Sum_probs=105.7

Q ss_pred             ccCCCCCCEEeCcCCCCCCCC----chhccCCCCCCEEECCCcccccc----Cc-------ccccCCCCCCEEEcccCcC
Q 043943          103 ISQLFKLQYLDLSANKLSGKI----PPEIGQLSFLSELSLYSNCLNGS----IP-------QSLGNLSKQSLLSLYNNSL  167 (775)
Q Consensus       103 ~~~l~~L~~L~ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~~~~~----~~-------~~~~~l~~L~~L~l~~n~~  167 (775)
                      +..+..++.++||+|.+...-    ...+.+-++|+..+++.- ++|.    ++       ..+-+|++|+.++|+.|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            444667777777777665332    222445566666666553 2221    11       1233444445444444444


Q ss_pred             cccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccC-------------ccCCCCCCCCEEEc
Q 043943          168 SGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIP-------------STLGKLKCLSNLNM  234 (775)
Q Consensus       168 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~l~~l~~L~~L~l  234 (775)
                      ....|..+.                    +.+++-..|+.|.+++|.+.-+.-             .-...-|.|+++..
T Consensus       105 g~~~~e~L~--------------------d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238         105 GSEFPEELG--------------------DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             CcccchHHH--------------------HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            333222110                    122344445555555554321100             11123466777777


Q ss_pred             ccccccccCCc-----cccCCCCCcEEEcccccCCCC-----CCccccCCCCCCEEEcccCcccccC----CccCCCCCC
Q 043943          235 SMNHLSGAIPS-----SIGNVRNLRSLFLYSNELSGS-----IPKEIGNLRSLSNLDLSINRLNGVI----PSSIGNSNN  300 (775)
Q Consensus       235 ~~n~~~~~~~~-----~l~~l~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~  300 (775)
                      ..|++.. .+.     .+..-..|+.+.+..|.|.-.     +-..+..+.+|+.||+..|.++-..    ...+...+.
T Consensus       165 grNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         165 GRNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             ccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            7776642 221     122335677777777765422     1112345677888888888765322    223344456


Q ss_pred             CCeeeccCccccCCCCccC------CCCCCCCeeeCcCCcCcC
Q 043943          301 LSILYLYSNQLSGSIPKEI------GNLKCLFDLELSMNNLTG  337 (775)
Q Consensus       301 L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~  337 (775)
                      |++|.+.+|-++......+      ...|+|..|...+|...+
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            7777777776654332221      124566666666665543

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=98.03  E-value=1.3e-05  Score=81.65  Aligned_cols=27  Identities=44%  Similarity=0.709  Sum_probs=24.4

Q ss_pred             eEeecCCCCcEEEEEeCCCCEEEEEEcc
Q 043943          744 YCIGKGAQGSLYKAKLQSEDLIAVKKFN  771 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~~g~~vAVK~l~  771 (775)
                      .+||+|+||+||||.| +++.||||.+.
T Consensus       216 eli~~Grfg~V~KaqL-~~~~VAVKifp  242 (534)
T KOG3653|consen  216 ELIGRGRFGCVWKAQL-DNRLVAVKIFP  242 (534)
T ss_pred             HHhhcCccceeehhhc-cCceeEEEecC
Confidence            4599999999999999 66999999984

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=5.9e-07  Score=75.55  Aligned_cols=86  Identities=24%  Similarity=0.361  Sum_probs=40.0

Q ss_pred             hcCCCCCEEEcCCCcCcccCCcCcc-CCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccc
Q 043943          489 GRLSSLNKLILNKNQLFGSLPPEIG-TLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQL  567 (775)
Q Consensus       489 ~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L  567 (775)
                      .....|+..+|++|.+. ..|..|. ..+.++.|+|++|.++. +|..+..++.|+.|+++.|.+. ..|..+..+. ++
T Consensus        50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~-~l  125 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLI-KL  125 (177)
T ss_pred             hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHH-hH
Confidence            33444445555555554 2222222 23345555555555542 3344555555555555555554 2334444444 45


Q ss_pred             cEEECcCCcCc
Q 043943          568 SELDLSQNFLE  578 (775)
Q Consensus       568 ~~L~Ls~n~l~  578 (775)
                      ..|+..+|.+.
T Consensus       126 ~~Lds~~na~~  136 (177)
T KOG4579|consen  126 DMLDSPENARA  136 (177)
T ss_pred             HHhcCCCCccc
Confidence            55555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.95  E-value=8.5e-07  Score=83.43  Aligned_cols=86  Identities=22%  Similarity=0.260  Sum_probs=53.5

Q ss_pred             CCEEEEEcCCCCCccccCc---cccCCCCCCCEEECCCCC---CcccCc-------ccccCCCCCCEEeCcCCCCCCCCc
Q 043943           58 ERVVGINLTTTSLNGTLDE---FSFSSFPDLLFLNLFNNE---LFGIIP-------PQISQLFKLQYLDLSANKLSGKIP  124 (775)
Q Consensus        58 ~~v~~l~l~~~~~~~~~~~---~~~~~l~~L~~L~ls~~~---~~~~~~-------~~~~~l~~L~~L~ls~n~~~~~~p  124 (775)
                      ..++.++|+++.+...-.+   ..+.+-++|+..++++--   ..+.++       .++.+|++|+..+||.|.+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4577788888877543210   244556677777777642   122222       345677888888888887765544


Q ss_pred             hh----ccCCCCCCEEECCCccc
Q 043943          125 PE----IGQLSFLSELSLYSNCL  143 (775)
Q Consensus       125 ~~----~~~l~~L~~L~L~~n~~  143 (775)
                      ..    ++.-..|++|.+++|.+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCC
Confidence            43    45667788888877755

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.94  E-value=4.3e-07  Score=76.33  Aligned_cols=105  Identities=24%  Similarity=0.316  Sum_probs=65.2

Q ss_pred             CCEEEcccCccccc--CCccccCCCCCcEEEccCCCccCcCChhh-hcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEE
Q 043943          446 LGTLDFSVNNITGS--IPPEIGNSSKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILNKNQLFGSLPPEIGTLTELELLD  522 (775)
Q Consensus       446 L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  522 (775)
                      +..++|+.|++...  .+..+.....|+..+|++|.+... |..| ...+.++.|++++|.+. .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            34445555544311  122344555666667777777643 3333 34557777777777776 5666677777777777


Q ss_pred             CCCCcccccCCccccCcCCCCEEEccCCcCc
Q 043943          523 LSENRLSNAIPGSLGNLLKVHYLNLSNNEFS  553 (775)
Q Consensus       523 ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  553 (775)
                      ++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            7777776 34555555777777777777665

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=97.91  E-value=1.1e-05  Score=87.26  Aligned_cols=50  Identities=26%  Similarity=0.425  Sum_probs=42.0

Q ss_pred             cccccHHHHHHHhcccccc---------eEeecCCCCcEEEEEeC----CCCEEEEEEccCCC
Q 043943          725 EGKITYDQIIRATNDFDEE---------YCIGKGAQGSLYKAKLQ----SEDLIAVKKFNSQL  774 (775)
Q Consensus       725 ~~~~~~~~l~~aT~~f~~~---------~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~~~  774 (775)
                      ...++|+|--+|.+.|+.+         .+||.|.||.||+|.|.    ....||||.|+.+.
T Consensus       607 iDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy  669 (996)
T KOG0196|consen  607 IDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY  669 (996)
T ss_pred             cCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCc
Confidence            3568999999998888764         89999999999999995    23579999998764

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=6.8e-05  Score=77.51  Aligned_cols=139  Identities=17%  Similarity=0.196  Sum_probs=87.1

Q ss_pred             cCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCC
Q 043943          440 WGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELE  519 (775)
Q Consensus       440 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  519 (775)
                      +..+.+++.|++++|.++ .+|   .-.++|+.|.+++|.-...+|..+  .++|++|++++|.....+|      .+|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence            345688999999999777 445   234579999998866545666544  3589999999884333444      3577


Q ss_pred             EEECCCCcccccCCccccCcCCCCEEEccCCc-Cc-cCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCC
Q 043943          520 LLDLSENRLSNAIPGSLGNLLKVHYLNLSNNE-FS-HKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLS  597 (775)
Q Consensus       520 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~-~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls  597 (775)
                      .|+++.+..... +.   -.++|+.|.+.+++ .. ..+|   ..++.+|+.|++++|... ..|..+.  .+|+.|+++
T Consensus       116 ~L~L~~n~~~~L-~~---LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        116 SLEIKGSATDSI-KN---VPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             eEEeCCCCCccc-cc---CcchHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            777776654321 11   12356777775432 11 1111   124458899999888765 4454443  578888887


Q ss_pred             CCc
Q 043943          598 YNQ  600 (775)
Q Consensus       598 ~n~  600 (775)
                      .|.
T Consensus       186 ~n~  188 (426)
T PRK15386        186 IEQ  188 (426)
T ss_pred             ccc
Confidence            763

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.76  E-value=6.2e-05  Score=66.54  Aligned_cols=84  Identities=13%  Similarity=0.114  Sum_probs=32.6

Q ss_pred             cccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCC
Q 043943           77 FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSK  156 (775)
Q Consensus        77 ~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  156 (775)
                      ..|..+++|+.+.+.. .+..+...+|..+++|+.+.+..+ +.......|.++++|+.+.+.. .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4455555555555553 344344445555555555555543 3333333455555555555543 222222333444444


Q ss_pred             CCEEEcc
Q 043943          157 QSLLSLY  163 (775)
Q Consensus       157 L~~L~l~  163 (775)
                      |+.+++.
T Consensus        83 l~~i~~~   89 (129)
T PF13306_consen   83 LKNIDIP   89 (129)
T ss_dssp             ECEEEET
T ss_pred             ccccccC
Confidence            4444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.71  E-value=0.00014  Score=64.24  Aligned_cols=36  Identities=8%  Similarity=0.059  Sum_probs=11.1

Q ss_pred             ccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943          127 IGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY  163 (775)
Q Consensus       127 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  163 (775)
                      |.++.+|+.+.+.. .+..+....|.++++|+.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~   43 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFP   43 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEES
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccc
Confidence            44444444444442 2332333334444444444433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.70  E-value=3.8e-05  Score=52.34  Aligned_cols=36  Identities=39%  Similarity=0.664  Sum_probs=16.0

Q ss_pred             CCCEEeCcCCCCCCCCchhccCCCCCCEEECCCcccc
Q 043943          108 KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLN  144 (775)
Q Consensus       108 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  144 (775)
                      +|++|++++|.++ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444555555444 23333445555555555555444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=3.9e-05  Score=52.29  Aligned_cols=37  Identities=43%  Similarity=0.690  Sum_probs=24.6

Q ss_pred             cccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcc
Q 043943          566 QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSG  603 (775)
Q Consensus       566 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  603 (775)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            5677777777777 455567777777777777777664

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.61  E-value=0.00012  Score=66.42  Aligned_cols=58  Identities=28%  Similarity=0.273  Sum_probs=26.2

Q ss_pred             CCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCc
Q 043943          109 LQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS  168 (775)
Q Consensus       109 L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  168 (775)
                      ...+||++|.+...  ..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.|.+|++.
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            34455555544311  12444555555555555555443333333444444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.60  E-value=0.00016  Score=65.65  Aligned_cols=105  Identities=21%  Similarity=0.270  Sum_probs=66.0

Q ss_pred             CCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCccc-CCccccCCCCCcEEe
Q 043943          517 ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGE-IPSQICNMESLVKLN  595 (775)
Q Consensus       517 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~  595 (775)
                      +...+||++|.+...  +.|..++.|.+|.|++|+|+..-|. +....+.|..|.|.+|++... .-.-+..++.|++|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            455667777766432  3455666777777777777755443 333333677777777766521 123466788888888


Q ss_pred             CCCCcCcccCC---ccccCCCCCCEEeCCCCc
Q 043943          596 LSYNQLSGFIP---NCFEDMHGLSSIDISYNR  624 (775)
Q Consensus       596 ls~n~l~~~~p---~~l~~l~~L~~l~ls~n~  624 (775)
                      +-+|+++...-   ..+..+++|++||++.-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            88888765432   235677888888876443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.57  E-value=3.1e-05  Score=87.16  Aligned_cols=149  Identities=21%  Similarity=0.184  Sum_probs=77.5

Q ss_pred             CCCCEEeCcCCCC-CCCCchhc-cCCCCCCEEECCCcccccc-CcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCE
Q 043943          107 FKLQYLDLSANKL-SGKIPPEI-GQLSFLSELSLYSNCLNGS-IPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLST  183 (775)
Q Consensus       107 ~~L~~L~ls~n~~-~~~~p~~~-~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  183 (775)
                      .+|++||+++... ...-|..+ ..+|+|+.|.+++-.+... .-.-..++++|..||+++++++..  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4566666666432 22223333 2356666666666444321 112234566666666666666544  45566666666


Q ss_pred             EeccCCcCcc-cCCcccCCCCCccEEEcccccCccc------cCccCCCCCCCCEEEcccccccccCCccc-cCCCCCcE
Q 043943          184 LDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGF------IPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNVRNLRS  255 (775)
Q Consensus       184 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~  255 (775)
                      |.+.+-.+.. ..-..+.++++|++||++.......      --+.-..+|+|+.||.+++.+...+-+.+ ...++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            6666544432 1112345677777777775443211      01223457888888888877665433322 22344444


Q ss_pred             EE
Q 043943          256 LF  257 (775)
Q Consensus       256 L~  257 (775)
                      +.
T Consensus       280 i~  281 (699)
T KOG3665|consen  280 IA  281 (699)
T ss_pred             hh
Confidence            43

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.49  E-value=0.00033  Score=71.22  Aligned_cols=29  Identities=34%  Similarity=0.585  Sum_probs=26.2

Q ss_pred             ceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          743 EYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       743 ~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      ...||+|.||.|+||.| -|+.||||.+..
T Consensus       216 ~e~IGkGRyGEVwrG~w-rGe~VAVKiF~s  244 (513)
T KOG2052|consen  216 QEIIGKGRFGEVWRGRW-RGEDVAVKIFSS  244 (513)
T ss_pred             EEEecCccccceeeccc-cCCceEEEEecc
Confidence            37799999999999999 889999999864

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.48  E-value=0.00034  Score=72.49  Aligned_cols=56  Identities=13%  Similarity=0.075  Sum_probs=34.5

Q ss_pred             CCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCc
Q 043943           80 SSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSN  141 (775)
Q Consensus        80 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n  141 (775)
                      ..+.+++.|++++|.++ .+|. +  -.+|++|++++|.--..+|..+  .++|++|++++|
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            34577888888887665 3341 1  1357888887754433555544  246777777776

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=97.44  E-value=0.00038  Score=76.11  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=27.1

Q ss_pred             ccceEeecCCCCcEEEEEe-CCCC----EEEEEEccCC
Q 043943          741 DEEYCIGKGAQGSLYKAKL-QSED----LIAVKKFNSQ  773 (775)
Q Consensus       741 ~~~~~iG~Gg~G~VYkg~l-~~g~----~vAVK~l~~~  773 (775)
                      ....+||+|+||+||||.| |+|.    +||+|.+...
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~  736 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEF  736 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeecc
Confidence            3457899999999999998 6664    7999998653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=4.2e-05  Score=86.10  Aligned_cols=125  Identities=18%  Similarity=0.249  Sum_probs=64.7

Q ss_pred             CCCCCEEEcccCccccc-CCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcc-cCCcCccCCCCCCE
Q 043943          443 FPQLGTLDFSVNNITGS-IPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFG-SLPPEIGTLTELEL  520 (775)
Q Consensus       443 ~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~  520 (775)
                      +|+|+.|.+.+-.+... +.....+.++|..||+|+.+++..  ..++.+++|+.|.+.+-.+.. ..-..+.++++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            45555555554433211 122334555666666666555533  445566666666665554432 11123455666666


Q ss_pred             EECCCCcccccC------CccccCcCCCCEEEccCCcCccCCchhHHhhhccccE
Q 043943          521 LDLSENRLSNAI------PGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSE  569 (775)
Q Consensus       521 L~ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~  569 (775)
                      ||+|........      -+.-..++.|+.||.|++.+...+-+.+..-.++|+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            666665433211      1223346777777777777766555555444334443

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=97.35  E-value=0.00021  Score=75.52  Aligned_cols=39  Identities=26%  Similarity=0.462  Sum_probs=31.5

Q ss_pred             cccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943          727 KITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL  774 (775)
Q Consensus       727 ~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~  774 (775)
                      .+.++|+.-+       ..||+|.||+||||.|.+  .||||.|+.+.
T Consensus       388 eIp~~ev~l~-------~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~  426 (678)
T KOG0193|consen  388 EIPPEEVLLG-------ERIGSGSFGTVYRGRWHG--DVAVKLLNVDD  426 (678)
T ss_pred             ccCHHHhhcc-------ceeccccccceeeccccc--ceEEEEEecCC
Confidence            4677887665       459999999999999954  59999998654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.28  E-value=4.4e-06  Score=83.76  Aligned_cols=35  Identities=11%  Similarity=0.100  Sum_probs=16.1

Q ss_pred             CCCcEEeCCCccce-eecCcCcCCCCCCCEEEcccC
Q 043943          420 PTLSFLDLSHNNFH-GQISSDWGRFPQLGTLDFSVN  454 (775)
Q Consensus       420 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n  454 (775)
                      ..|+.+.++++... ...-+.+..+++|+.+++-++
T Consensus       401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             cccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            34555555555432 122233444555555555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.15  E-value=9.7e-06  Score=81.36  Aligned_cols=82  Identities=22%  Similarity=0.148  Sum_probs=38.9

Q ss_pred             CccEEEcccccCccc--cCccCCCCCCCCEEEccccc-ccccCCccc-cCCCCCcEEEcccc-cCCCCCCcc-ccCCCCC
Q 043943          204 NLVTLHLFNNSLSGF--IPSTLGKLKCLSNLNMSMNH-LSGAIPSSI-GNVRNLRSLFLYSN-ELSGSIPKE-IGNLRSL  277 (775)
Q Consensus       204 ~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l-~~l~~L~~L~l~~n-~~~~~~~~~-l~~l~~L  277 (775)
                      .|+.|.+.++.-.+.  .-.....++++++|.+.++. ++...-..+ ..+++|++|++..| .++...... ...|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            467777776653322  12233466677777666654 111111111 23566666666653 222222111 1245566


Q ss_pred             CEEEcccC
Q 043943          278 SNLDLSIN  285 (775)
Q Consensus       278 ~~L~l~~n  285 (775)
                      ++|+++.+
T Consensus       219 ~~lNlSwc  226 (483)
T KOG4341|consen  219 KYLNLSWC  226 (483)
T ss_pred             HHhhhccC
Confidence            66666554

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=97.05  E-value=0.00047  Score=75.15  Aligned_cols=37  Identities=22%  Similarity=0.382  Sum_probs=31.5

Q ss_pred             HhcccccceEeecCCCCcEEEEEe-----------------CCCCEEEEEEccC
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKL-----------------QSEDLIAVKKFNS  772 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l-----------------~~g~~vAVK~l~~  772 (775)
                      .+++|...++||+||||.||||.+                 .+++.||||++..
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~  196 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNM  196 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecc
Confidence            467899999999999999999975                 2467899999863

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.92  E-value=0.00046  Score=65.69  Aligned_cols=62  Identities=24%  Similarity=0.305  Sum_probs=32.3

Q ss_pred             CCCCCCEEEcccCcccccCCccccCCCCCcEEEccCC--CccCcCChhhhcCCCCCEEEcCCCcCc
Q 043943          442 RFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN--HIGGKIPMELGRLSSLNKLILNKNQLF  505 (775)
Q Consensus       442 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~~~  505 (775)
                      .+..|+.+.+.+..++..  ..|..+++|++|.++.|  ++.+.++.....+|+|++|++++|++.
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            344455555555444422  23445556666666666  444444444445566666666666654

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=96.84  E-value=0.00083  Score=66.89  Aligned_cols=36  Identities=33%  Similarity=0.582  Sum_probs=30.2

Q ss_pred             ccccceEeecCCCCcEEEEEeC-CCCEEEEEEccCCC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQL  774 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~~  774 (775)
                      .+.+.+++|.|+||.||+|++. .+..|||||..++.
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~   61 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDK   61 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCC
Confidence            3455689999999999999995 46899999987754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.80  E-value=0.00059  Score=64.94  Aligned_cols=62  Identities=29%  Similarity=0.352  Sum_probs=32.4

Q ss_pred             CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCC--CCCCCCchhccCCCCCCEEECCCcccc
Q 043943           81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSAN--KLSGKIPPEIGQLSFLSELSLYSNCLN  144 (775)
Q Consensus        81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n--~~~~~~p~~~~~l~~L~~L~L~~n~~~  144 (775)
                      .+..|+.|++.+..++.  ...|..+++|++|.++.|  .+.+.++.....+++|++|++++|++.
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            44445555555444431  123445566666666666  444444444455566666666666654

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=96.39  E-value=0.0039  Score=69.86  Aligned_cols=37  Identities=35%  Similarity=0.454  Sum_probs=32.3

Q ss_pred             HhcccccceEeecCCCCcEEEEEeC-C----CCEEEEEEccC
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKLQ-S----EDLIAVKKFNS  772 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~----g~~vAVK~l~~  772 (775)
                      ++++|...++||+|+||.||+|... +    |..||||++..
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~  171 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE  171 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence            5678999999999999999999985 4    68999999753

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.00016  Score=68.83  Aligned_cols=84  Identities=26%  Similarity=0.286  Sum_probs=38.4

Q ss_pred             CCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCC-hhhhcCCCCCEEE
Q 043943          420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP-MELGRLSSLNKLI  498 (775)
Q Consensus       420 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~  498 (775)
                      .+.+.|++-+|.++++  .....++.|+.|.|+-|+|+..  ..+..|++|++|+|..|.|..... ..+.++++|+.|-
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3455555555555432  1223455555555555555433  224455555555555554432211 1234444555555


Q ss_pred             cCCCcCccc
Q 043943          499 LNKNQLFGS  507 (775)
Q Consensus       499 L~~n~~~~~  507 (775)
                      |..|+-.|.
T Consensus        95 L~ENPCc~~  103 (388)
T KOG2123|consen   95 LDENPCCGE  103 (388)
T ss_pred             hccCCcccc
Confidence            554444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.30  E-value=0.00029  Score=78.40  Aligned_cols=235  Identities=20%  Similarity=0.059  Sum_probs=119.5

Q ss_pred             CCCCCCEEeCcCCCCCCC--CchhccCCCCCCEEECCCc-cccccCc----ccccCCCCCCEEEcccCc-CcccCCcccC
Q 043943          105 QLFKLQYLDLSANKLSGK--IPPEIGQLSFLSELSLYSN-CLNGSIP----QSLGNLSKQSLLSLYNNS-LSGYIPPVIG  176 (775)
Q Consensus       105 ~l~~L~~L~ls~n~~~~~--~p~~~~~l~~L~~L~L~~n-~~~~~~~----~~~~~l~~L~~L~l~~n~-~~~~~~~~l~  176 (775)
                      .++.|+.|.+..+.-...  .-.....+++|+.|+++++ ......+    .....+++|+.|+++++. +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            467777777777643322  2234566778888888763 1111111    233456778888888777 5544434443


Q ss_pred             -CCCCCCEEeccCCc-CcccCC-cccCCCCCccEEEcccccCc--cccCccCCCCCCCCEEEcccccccccCCccccCCC
Q 043943          177 -NLISLSTLDLSLNQ-LIGSVP-FFLGNLTNLVTLHLFNNSLS--GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVR  251 (775)
Q Consensus       177 -~l~~L~~L~l~~n~-~~~~~~-~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~  251 (775)
                       .|++|++|.+..+. ++...- .....++.|++|+++++...  ..+.....++++|+.|.+....          .+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCc
Confidence             37888888877665 332221 12246777888888877643  1122234456666665543321          144


Q ss_pred             CCcEEEcccccCC---CCCCccccCCCCCCEEEcccCcccccC-CccCCCCCCCCeeeccCccccCCCCccCCCCCCCCe
Q 043943          252 NLRSLFLYSNELS---GSIPKEIGNLRSLSNLDLSINRLNGVI-PSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFD  327 (775)
Q Consensus       252 ~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  327 (775)
                      .++.+.+......   ......+..+++++.+.+..+...... ...+..++.|+ ..+...         ......++.
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~l~~  405 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDSLRV  405 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCccce
Confidence            4555554443221   122223456777777777776633222 13344455552 111111         111122667


Q ss_pred             eeCcCCcCcCc-cCCcCCC-CCcCcEEEccCCcC
Q 043943          328 LELSMNNLTGV-IPSSIGN-LRNLRLLYLYRNEL  359 (775)
Q Consensus       328 L~l~~n~l~~~-~~~~~~~-~~~L~~L~l~~n~l  359 (775)
                      |+++.+..... .-..... +..++.+++.++..
T Consensus       406 L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  406 LNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             EecccCccccccchHHHhhhhhccccCCccCccc
Confidence            77766654321 1111111 45566666666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.07  E-value=0.00052  Score=65.46  Aligned_cols=86  Identities=20%  Similarity=0.219  Sum_probs=55.8

Q ss_pred             CCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEE
Q 043943          346 LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFL  425 (775)
Q Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  425 (775)
                      +.+.+.|++++|.++++  .....++.|+.|.|+-|.++..-  .+..|++|+.|+|..|.+...-......++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34556677777766532  23346677777777777776433  366777888888887777655555555677777777


Q ss_pred             eCCCccceee
Q 043943          426 DLSHNNFHGQ  435 (775)
Q Consensus       426 ~l~~n~l~~~  435 (775)
                      .|..|.=.+.
T Consensus        94 WL~ENPCc~~  103 (388)
T KOG2123|consen   94 WLDENPCCGE  103 (388)
T ss_pred             hhccCCcccc
Confidence            7776654443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.81  E-value=0.00083  Score=74.74  Aligned_cols=38  Identities=18%  Similarity=0.208  Sum_probs=17.3

Q ss_pred             CCcccceeccccc-cccccchhhhccCCCCcEEeCCCcc
Q 043943          394 LTNLVRVRMNQNN-LSGNISEAFVGTYPTLSFLDLSHNN  431 (775)
Q Consensus       394 l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~  431 (775)
                      +.+|+.++++.+. ++......+...|++|+.|.+..|.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS  280 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence            3445555555444 3333333333335555555544443

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=95.76  E-value=0.0062  Score=63.50  Aligned_cols=29  Identities=31%  Similarity=0.495  Sum_probs=24.9

Q ss_pred             eEeecCCCCcEEEEEeCCCCE-EEEEEccCC
Q 043943          744 YCIGKGAQGSLYKAKLQSEDL-IAVKKFNSQ  773 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~~g~~-vAVK~l~~~  773 (775)
                      ..||+|+||+||||.+ .|+. ||||++...
T Consensus        47 ~~iG~G~~g~V~~~~~-~g~~~vavK~~~~~   76 (362)
T KOG0192|consen   47 EVLGSGSFGTVYKGKW-RGTDVVAVKIISDP   76 (362)
T ss_pred             hhcccCCceeEEEEEe-CCceeEEEEEecch
Confidence            3499999999999999 6666 999999753

>PTZ00284 protein kinase; Provisional

Probab=95.66  E-value=0.0063  Score=67.19  Aligned_cols=42  Identities=24%  Similarity=0.244  Sum_probs=35.4

Q ss_pred             HHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          730 YDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       730 ~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .+++..++++|...++||+|+||+||+|... .|+.||||+++
T Consensus       121 ~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~  163 (467)
T PTZ00284        121 GEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVR  163 (467)
T ss_pred             CCccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEe
Confidence            3555567788999999999999999999874 67899999985

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=95.30  E-value=0.0035  Score=53.86  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=29.7

Q ss_pred             cccceEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL  774 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~  774 (775)
                      |+ ..-||.|+.|.||+|+|.+|+.||||..+++.
T Consensus        14 fd-~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i   47 (119)
T PF03109_consen   14 FD-PEPLASASIAQVHRARLKDGEEVAVKVQRPGI   47 (119)
T ss_pred             CC-cchhhheehhhheeeeecccchhhhhhcchHH
Confidence            54 35699999999999999999999999988754

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=95.28  E-value=0.0085  Score=59.06  Aligned_cols=34  Identities=26%  Similarity=0.602  Sum_probs=28.3

Q ss_pred             cccceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ  773 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~  773 (775)
                      |..-|+|++|.||.||||+=. +++.||.||++-+
T Consensus        78 fe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kme  112 (419)
T KOG0663|consen   78 FEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKME  112 (419)
T ss_pred             HHHHhhcccCcceeEEEeccCCcceeEEeeecccc
Confidence            445588999999999999863 6789999999754

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=95.16  E-value=0.017  Score=62.51  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=30.3

Q ss_pred             ccccceEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL  774 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~  774 (775)
                      .|++ +.||.|++|.||||++.+|+.||||..+++.
T Consensus       119 ~fd~-~plasaSigQVh~A~l~~G~~VaVKv~rp~i  153 (437)
T TIGR01982       119 EFEE-KPLAAASIAQVHRARLVDGKEVAVKVLRPGI  153 (437)
T ss_pred             hCCC-cceeeeehhheEEEEecCCCEEEEEeeCCCc
Confidence            3543 6799999999999999999999999987753

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PTZ00036 glycogen synthase kinase; Provisional

Probab=94.95  E-value=0.021  Score=62.27  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=30.6

Q ss_pred             hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      +++|...++||+|+||.||+|... .|+.||||++..
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~  101 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQ  101 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEec
Confidence            456777889999999999999874 689999998854

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=94.84  E-value=0.012  Score=61.31  Aligned_cols=31  Identities=32%  Similarity=0.514  Sum_probs=26.1

Q ss_pred             ceEeecCCCCcEEEEEe-CCCCEEEEEEccCC
Q 043943          743 EYCIGKGAQGSLYKAKL-QSEDLIAVKKFNSQ  773 (775)
Q Consensus       743 ~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~~  773 (775)
                      -.+||+|-||.||||.= .+|..||.||+.-+
T Consensus       122 i~kIGeGTyg~VYkAr~~~tgkivALKKvr~d  153 (560)
T KOG0600|consen  122 IEKIGEGTYGQVYKARDLETGKIVALKKVRFD  153 (560)
T ss_pred             HHHhcCcchhheeEeeecccCcEEEEEEeecc
Confidence            35599999999999974 58999999998643

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=94.81  E-value=0.017  Score=63.94  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=31.0

Q ss_pred             HhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      ..+.|.-.++||+|+||+||+|.. .+|+.||||++..
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~   67 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDM   67 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEec
Confidence            345677778899999999999985 5799999999853

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.81  E-value=0.013  Score=65.19  Aligned_cols=30  Identities=33%  Similarity=0.544  Sum_probs=25.0

Q ss_pred             eEeecCCCCcEEEEEeCC------CCEEEEEEccCC
Q 043943          744 YCIGKGAQGSLYKAKLQS------EDLIAVKKFNSQ  773 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~~------g~~vAVK~l~~~  773 (775)
                      ..||+|.||+||+|+.++      .+.||||.|+..
T Consensus       492 ~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~  527 (774)
T KOG1026|consen  492 EELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDK  527 (774)
T ss_pred             hhhcCchhhhhhhhhccCCCCCccceehhHhhhccc
Confidence            449999999999999853      357999999864

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=94.78  E-value=0.023  Score=60.74  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=26.5

Q ss_pred             cccceEeecCCCCcEEEEEe------CCCCEEEEEEccC
Q 043943          740 FDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNS  772 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~  772 (775)
                      |.-.+.||+||||.||+|..      ..+..||||+++.
T Consensus        37 ~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~   75 (375)
T cd05104          37 LSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKP   75 (375)
T ss_pred             eehhheecCCccceEEEEEEeccccCccceeEEEEeccC
Confidence            45557799999999999974      2456899999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.59  E-value=0.013  Score=32.97  Aligned_cols=18  Identities=56%  Similarity=0.652  Sum_probs=8.4

Q ss_pred             ccEEECcCCcCcccCCccc
Q 043943          567 LSELDLSQNFLEGEIPSQI  585 (775)
Q Consensus       567 L~~L~Ls~n~l~~~~p~~l  585 (775)
                      |++|||++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444555555444 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00090 RIO RIO-like kinase

Probab=94.54  E-value=0.029  Score=55.14  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=27.8

Q ss_pred             cccceEeecCCCCcEEEEE--eCCCCEEEEEEccC
Q 043943          740 FDEEYCIGKGAQGSLYKAK--LQSEDLIAVKKFNS  772 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~--l~~g~~vAVK~l~~  772 (775)
                      |.-...||+|+||.||+|.  ..+|+.||||+...
T Consensus        30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~   64 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRT   64 (237)
T ss_pred             HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEc
Confidence            3344669999999999998  67999999998864

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=94.42  E-value=0.011  Score=68.12  Aligned_cols=34  Identities=38%  Similarity=0.528  Sum_probs=28.5

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      ++|-+-.++|+||||.|||.+=. ||+..||||+.
T Consensus       479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIp  513 (1351)
T KOG1035|consen  479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIP  513 (1351)
T ss_pred             hhhHHHHHhcCCCCceEEEEeecccchhhhhhhcc
Confidence            44666678999999999998753 99999999984

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.33  E-value=0.018  Score=32.37  Aligned_cols=18  Identities=50%  Similarity=0.615  Sum_probs=8.7

Q ss_pred             CCEEECCCccccccCcccc
Q 043943          133 LSELSLYSNCLNGSIPQSL  151 (775)
Q Consensus       133 L~~L~L~~n~~~~~~~~~~  151 (775)
                      |++|++++|+++ .+|.+|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 344433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=94.08  E-value=0.036  Score=59.14  Aligned_cols=29  Identities=34%  Similarity=0.557  Sum_probs=23.9

Q ss_pred             eEeecCCCCcEEEEEeC--CC--CE-EEEEEccC
Q 043943          744 YCIGKGAQGSLYKAKLQ--SE--DL-IAVKKFNS  772 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~--~g--~~-vAVK~l~~  772 (775)
                      ++||+|+||.||+|++.  ++  .. ||||+.+.
T Consensus       163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~  196 (474)
T KOG0194|consen  163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKG  196 (474)
T ss_pred             ceeecccccEEEEEEEEecCCceeeeeEEEeecc
Confidence            67999999999999995  33  23 89999875

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=94.04  E-value=0.039  Score=58.81  Aligned_cols=43  Identities=19%  Similarity=0.349  Sum_probs=36.3

Q ss_pred             cHHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          729 TYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       729 ~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .++++..+.++|.....||+|+||.||++... +|+.||||.+.
T Consensus        34 ~~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~   77 (371)
T cd05622          34 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLS   77 (371)
T ss_pred             HHhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEE
Confidence            35566667788999999999999999999985 67899999874

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=93.93  E-value=0.031  Score=59.52  Aligned_cols=36  Identities=31%  Similarity=0.474  Sum_probs=30.9

Q ss_pred             HhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      ..++|...++||+|+||.||+++-. +|+.||||++.
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~   77 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLS   77 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE
Confidence            4567888889999999999999875 68899999984

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=93.86  E-value=0.048  Score=58.17  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=27.0

Q ss_pred             ccccceEeecCCCCcEEEEEe------CCCCEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~  772 (775)
                      +|.-.++||+|+||.||+|..      .++..||||++..
T Consensus        39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~   78 (374)
T cd05106          39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKA   78 (374)
T ss_pred             HceehheecCCCcccEEEEEEecCCcccccceeEEEeccC
Confidence            456667899999999999874      2346899999864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=93.66  E-value=0.049  Score=57.98  Aligned_cols=39  Identities=26%  Similarity=0.422  Sum_probs=32.0

Q ss_pred             HHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          733 IIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       733 l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      +...+++|...++||+|+||.||++... +|+.||+|.+.
T Consensus        38 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~   77 (370)
T cd05621          38 LQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLS   77 (370)
T ss_pred             cCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEE
Confidence            3344567777889999999999999985 57899999874

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=93.47  E-value=0.063  Score=59.01  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             cccccceEeecCCCCcEEEEEeCC-CCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQS-EDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~~~  773 (775)
                      ..|++ .-||+|++|.||+|++.+ |+.||||.+.++
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~  155 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD  155 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence            34666 679999999999999988 999999999865

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=93.42  E-value=0.076  Score=57.06  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=26.3

Q ss_pred             ccccceEeecCCCCcEEEEEeC------CCCEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~  772 (775)
                      .|.-.++||+|+||.||+|+..      .+..||||++..
T Consensus        38 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~   77 (400)
T cd05105          38 GLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKP   77 (400)
T ss_pred             ceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCC
Confidence            4455577999999999999862      234699999964

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=93.38  E-value=0.06  Score=57.82  Aligned_cols=34  Identities=29%  Similarity=0.321  Sum_probs=26.6

Q ss_pred             cccceEeecCCCCcEEEEEeC------CCCEEEEEEccCC
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNSQ  773 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~~  773 (775)
                      +.-..+||+|+||.||+|.+.      .+..||||+++..
T Consensus        39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~   78 (401)
T cd05107          39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKST   78 (401)
T ss_pred             eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCC
Confidence            444467999999999999974      2358999999753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=93.27  E-value=0.061  Score=56.91  Aligned_cols=29  Identities=34%  Similarity=0.495  Sum_probs=25.4

Q ss_pred             eEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          744 YCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++||+|+||.||+|+.. +|+.||||++..
T Consensus        80 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~  109 (353)
T PLN00034         80 NRIGSGAGGTVYKVIHRPTGRLYALKVIYG  109 (353)
T ss_pred             hhccCCCCeEEEEEEECCCCCEEEEEEEec
Confidence            56999999999999874 789999999853

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=93.09  E-value=0.052  Score=56.91  Aligned_cols=32  Identities=28%  Similarity=0.522  Sum_probs=27.2

Q ss_pred             cccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      |.+ .++|+|-||+||-|+-. .|+.||||.+..
T Consensus       567 f~d-evLGSGQFG~VYgg~hRktGrdVAvKvIdK  599 (888)
T KOG4236|consen  567 FAD-EVLGSGQFGTVYGGKHRKTGRDVAVKVIDK  599 (888)
T ss_pred             hhH-hhccCCcceeeecceecccCceeeeeeeec
Confidence            544 58999999999999984 799999999853

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=92.86  E-value=0.029  Score=53.57  Aligned_cols=30  Identities=40%  Similarity=0.467  Sum_probs=25.7

Q ss_pred             eEeecCCCCcEEEEEe-CCCCEEEEEEccCC
Q 043943          744 YCIGKGAQGSLYKAKL-QSEDLIAVKKFNSQ  773 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~~  773 (775)
                      ..||.|.||+|+|=.. +.|+.+||||+...
T Consensus        70 g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~  100 (361)
T KOG1006|consen   70 GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSN  100 (361)
T ss_pred             HHhcCCcchhhhhhhcCccCcEEEEEEeeec
Confidence            4499999999999877 47999999999753

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=92.76  E-value=0.094  Score=55.38  Aligned_cols=37  Identities=30%  Similarity=0.466  Sum_probs=31.8

Q ss_pred             HhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ..++|.--.+||+||||.||-+.=. .|...|+|+|+.
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkK  176 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKK  176 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccH
Confidence            4577888899999999999999875 689999999963

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=92.64  E-value=0.083  Score=61.26  Aligned_cols=36  Identities=31%  Similarity=0.395  Sum_probs=31.0

Q ss_pred             hcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      -..|.-+..||+||||+||+|+=.+|+.||+|.=++
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P  732 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKP  732 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecC
Confidence            345777788999999999999999999999998544

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=92.45  E-value=0.13  Score=55.96  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=31.3

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~  773 (775)
                      ++|.--.++|+|.||+||.+.+. +++..|||.|+.+
T Consensus       368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~  404 (694)
T KOG0694|consen  368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKG  404 (694)
T ss_pred             cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeecc
Confidence            45777899999999999999995 6789999999754

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=92.43  E-value=0.035  Score=61.64  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=28.7

Q ss_pred             cccccceEeecCCCC-cEEEEEeCCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQG-SLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G-~VYkg~l~~g~~vAVK~l~~  772 (775)
                      .-|+.+.++|.|.-| .||+|.. +|+.|||||+-.
T Consensus       509 ~~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~  543 (903)
T KOG1027|consen  509 LFFSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLE  543 (903)
T ss_pred             eeeccHHHcccCCCCcEEEEEee-CCceehHHHHhh
Confidence            346777889999988 4799999 999999999854

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=92.27  E-value=0.12  Score=54.41  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=27.0

Q ss_pred             ccccceEeecCCCCcEEEEEeCC--CCEEEEEEcc
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQS--EDLIAVKKFN  771 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~~--g~~vAVK~l~  771 (775)
                      +|.-...||+|+||.||+|...+  +..||||++.
T Consensus        31 ~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~   65 (340)
T PTZ00426         31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFE   65 (340)
T ss_pred             hcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEE
Confidence            46667889999999999998643  3689999874

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=91.93  E-value=0.16  Score=54.08  Aligned_cols=36  Identities=31%  Similarity=0.355  Sum_probs=30.0

Q ss_pred             hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      .+.|...+.||+|+||.||++.-. .|+.||||++..
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   59 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR   59 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCc
Confidence            355777788999999999999864 688999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.90  E-value=0.00098  Score=71.96  Aligned_cols=38  Identities=29%  Similarity=0.269  Sum_probs=21.3

Q ss_pred             CCCCEEEcccCcccccCC----ccCCCCCCCCeeeccCcccc
Q 043943          275 RSLSNLDLSINRLNGVIP----SSIGNSNNLSILYLYSNQLS  312 (775)
Q Consensus       275 ~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~  312 (775)
                      ..+++++++.|.++....    ..+..++.++++.+++|.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            455666666666554322    23344556667777766655

>PHA03211 serine/threonine kinase US3; Provisional

Probab=91.86  E-value=0.15  Score=55.70  Aligned_cols=32  Identities=16%  Similarity=0.294  Sum_probs=27.6

Q ss_pred             ccccceEeecCCCCcEEEEEeC-CCCEEEEEEc
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKF  770 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l  770 (775)
                      +|.-...||+|+||.||+|... .++.||||+.
T Consensus       170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~  202 (461)
T PHA03211        170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAG  202 (461)
T ss_pred             CeEEEEEEccCCCeEEEEEEECCCCCEEEEecc
Confidence            4677788999999999999986 4789999964

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=91.85  E-value=0.084  Score=56.29  Aligned_cols=34  Identities=29%  Similarity=0.558  Sum_probs=27.2

Q ss_pred             cccceEeecCCCCcEEEEEe-CCCCEEEEEEccCC
Q 043943          740 FDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNSQ  773 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~~  773 (775)
                      |.+-+.||.|+||.||-+.= .+.++||||+++..
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsyS   62 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYS   62 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeecccc
Confidence            44445699999999999875 36789999999753

>PHA03209 serine/threonine kinase US3; Provisional

Probab=91.51  E-value=0.22  Score=52.83  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=30.3

Q ss_pred             HhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      +..+|.....||+|+||.||+|... .++.||||...
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~  100 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQ  100 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCC
Confidence            4567888899999999999999985 56789999754

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=91.50  E-value=0.17  Score=59.00  Aligned_cols=31  Identities=29%  Similarity=0.479  Sum_probs=25.4

Q ss_pred             ceEeecCCCCcEEEEEeC--CCC----EEEEEEccCC
Q 043943          743 EYCIGKGAQGSLYKAKLQ--SED----LIAVKKFNSQ  773 (775)
Q Consensus       743 ~~~iG~Gg~G~VYkg~l~--~g~----~vAVK~l~~~  773 (775)
                      .+.||+|.||.||+|.+.  +|.    .||||.+...
T Consensus       697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~  733 (1025)
T KOG1095|consen  697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL  733 (1025)
T ss_pred             eeeeccccccceEEEEEecCCCCccceEEEEEecccc
Confidence            367999999999999995  343    4999999754

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=91.06  E-value=0.19  Score=38.68  Aligned_cols=18  Identities=28%  Similarity=0.449  Sum_probs=15.4

Q ss_pred             ccccHHHHHHHhcccccc
Q 043943          726 GKITYDQIIRATNDFDEE  743 (775)
Q Consensus       726 ~~~~~~~l~~aT~~f~~~  743 (775)
                      ..++|+|..+|...|+.+
T Consensus        55 DP~TYEDP~qAV~eFAkE   72 (75)
T PF14575_consen   55 DPHTYEDPNQAVREFAKE   72 (75)
T ss_dssp             -GGGSSSHHHHHHHCSSB
T ss_pred             CcccccCHHHHHHHHHhh
Confidence            568999999999999876

...

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=90.91  E-value=0.13  Score=56.02  Aligned_cols=40  Identities=25%  Similarity=0.281  Sum_probs=30.1

Q ss_pred             ccHHHHHHHhcccccceEeecCCCCcEEEEEeC--CCC--EEEEEEccCCC
Q 043943          728 ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ--SED--LIAVKKFNSQL  774 (775)
Q Consensus       728 ~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~--~g~--~vAVK~l~~~~  774 (775)
                      +.-++|...       ++||+|.||.|.||.|.  .|.  .||||.|..+.
T Consensus       107 Ipee~i~l~-------e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~  150 (1039)
T KOG0199|consen  107 IPEEQIKLY-------ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDS  150 (1039)
T ss_pred             ccHHHHHHH-------HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCc
Confidence            445555443       45999999999999994  554  58999998753

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=90.89  E-value=0.19  Score=51.79  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=28.2

Q ss_pred             cccccceEeecCCCCcEEEEEe------CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~  772 (775)
                      ++|...+.||+|+||.||+|..      .++..||||+++.
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~   75 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKP   75 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCc
Confidence            4577788999999999999974      1345899998864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=90.75  E-value=0.21  Score=51.94  Aligned_cols=32  Identities=31%  Similarity=0.588  Sum_probs=27.8

Q ss_pred             cccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      |...+.||+|+||.||+|+.. +|..||||++.
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~   59 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMS   59 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEe
Confidence            566678999999999999974 68899999985

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.56  E-value=0.0042  Score=57.84  Aligned_cols=88  Identities=22%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             ccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCC
Q 043943           78 SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ  157 (775)
Q Consensus        78 ~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  157 (775)
                      .+..+...+.||++.|.+.. .-..|+.++.|..|+++.|.+. .+|..+..+..++++++..|..+ ..|.++...+++
T Consensus        37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            44455566666666665542 2233455555666666666555 45666666666666666665554 555566666666


Q ss_pred             CEEEcccCcCc
Q 043943          158 SLLSLYNNSLS  168 (775)
Q Consensus       158 ~~L~l~~n~~~  168 (775)
                      +++++..+.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            65555555443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.24  E-value=0.0019  Score=69.70  Aligned_cols=37  Identities=38%  Similarity=0.533  Sum_probs=19.0

Q ss_pred             ccceeccccccccccchhh---hccCCCCcEEeCCCccce
Q 043943          397 LVRVRMNQNNLSGNISEAF---VGTYPTLSFLDLSHNNFH  433 (775)
Q Consensus       397 L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~l~~n~l~  433 (775)
                      +..+.+.+|.+........   ....+.|+.|+++.|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            5566666666554432222   133445555666655554

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=89.73  E-value=0.21  Score=50.42  Aligned_cols=35  Identities=26%  Similarity=0.543  Sum_probs=29.5

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++|.--++||+|+||+||...-. .|+..|+|.|+.
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K   60 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKK   60 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhh
Confidence            45888899999999999998764 688999999863

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=89.66  E-value=0.25  Score=53.97  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL  774 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~  774 (775)
                      ..|++ .-|+.++-|.||+|+|++|+.||||...++.
T Consensus       126 ~eF~~-~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi  161 (517)
T COG0661         126 SEFEP-EPIASASIAQVHRAVLKSGEEVAVKVQRPGI  161 (517)
T ss_pred             HHcCC-CchhhhhHhhheeEEecCCCEEEEEecCCCh
Confidence            44653 4689999999999999999999999998875

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=89.62  E-value=0.045  Score=53.02  Aligned_cols=33  Identities=36%  Similarity=0.454  Sum_probs=26.6

Q ss_pred             cccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      |+--.++|+|+||.|||+.-. .|++||||+.-.
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV   68 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPV   68 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCc
Confidence            333355999999999999875 699999999754

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.59  E-value=0.042  Score=50.45  Aligned_cols=81  Identities=21%  Similarity=0.246  Sum_probs=41.6

Q ss_pred             CCCEEECCCCcccccCCccccCcCCCCEEEccCCcCcc-CCchhHHhhhccccEEECcCC-cCcccCCccccCCCCCcEE
Q 043943          517 ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSH-KIPTQFEKLQLQLSELDLSQN-FLEGEIPSQICNMESLVKL  594 (775)
Q Consensus       517 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L  594 (775)
                      .++.+|-++..|....-+.+..+++++.|.+.++.--+ --.+.+.+..++|+.|+|++| +||..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            45566666666665544555666666666666653221 111222233346666666655 4444334444555555555


Q ss_pred             eCC
Q 043943          595 NLS  597 (775)
Q Consensus       595 ~ls  597 (775)
                      .|.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            543

>PHA03212 serine/threonine kinase US3; Provisional

Probab=89.42  E-value=0.33  Score=52.07  Aligned_cols=34  Identities=15%  Similarity=0.148  Sum_probs=29.0

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      ++|.-..+||+|+||.||++.-. .|+.||||+..
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~  126 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ  126 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh
Confidence            45777789999999999999864 68899999864

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=88.70  E-value=0.23  Score=52.55  Aligned_cols=30  Identities=23%  Similarity=0.385  Sum_probs=25.8

Q ss_pred             eEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943          744 YCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ  773 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~  773 (775)
                      +.||+|-||.||.|.+.+-..||||.++.+
T Consensus       212 ~~LG~G~FG~V~~g~~~~~~~vavk~ik~~  241 (468)
T KOG0197|consen  212 RELGSGQFGEVWLGKWNGSTKVAVKTIKEG  241 (468)
T ss_pred             HHhcCCccceEEEEEEcCCCcccceEEecc
Confidence            459999999999999955559999999764

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=88.55  E-value=0.21  Score=53.66  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=27.6

Q ss_pred             ceEeecCCCCcEEEEEeCC-CCEEEEEEccCCC
Q 043943          743 EYCIGKGAQGSLYKAKLQS-EDLIAVKKFNSQL  774 (775)
Q Consensus       743 ~~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~~~~  774 (775)
                      ++++|.|-||.||-|+|.. ...||||.|+.++
T Consensus       272 khKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt  304 (1157)
T KOG4278|consen  272 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT  304 (1157)
T ss_pred             eeccCCCcccceeeeeeeccceeeehhhhhhcc
Confidence            5779999999999999963 5689999998764

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=87.93  E-value=0.65  Score=47.01  Aligned_cols=39  Identities=23%  Similarity=0.415  Sum_probs=32.2

Q ss_pred             cccHHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          727 KITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       727 ~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      .++..||++-       ++||+|..|+|||.... .|+..|.|.+..
T Consensus        75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~  114 (364)
T KOG0581|consen   75 GISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKIYALKVILL  114 (364)
T ss_pred             ccCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeEEEEEeecc
Confidence            3677787665       66999999999999984 788999999854

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.84  E-value=0.31  Score=25.31  Aligned_cols=9  Identities=67%  Similarity=0.815  Sum_probs=3.0

Q ss_pred             CCEEeCcCC
Q 043943          109 LQYLDLSAN  117 (775)
Q Consensus       109 L~~L~ls~n  117 (775)
                      |++|++++|
T Consensus         3 L~~L~l~~n   11 (17)
T PF13504_consen    3 LRTLDLSNN   11 (17)
T ss_dssp             -SEEEETSS
T ss_pred             cCEEECCCC
Confidence            333333333

...

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=87.55  E-value=0.24  Score=52.75  Aligned_cols=38  Identities=32%  Similarity=0.627  Sum_probs=31.4

Q ss_pred             cccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          727 KITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       727 ~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      .+.|++|.+-       .-+|.|+-|.||+|.| .++.||||+.+.
T Consensus       120 eiPFe~IsEL-------eWlGSGaQGAVF~Grl-~netVAVKKV~e  157 (904)
T KOG4721|consen  120 EIPFEEISEL-------EWLGSGAQGAVFLGRL-HNETVAVKKVRE  157 (904)
T ss_pred             cCCHHHhhhh-------hhhccCcccceeeeec-cCceehhHHHhh
Confidence            4678887543       5599999999999999 779999999864

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=86.31  E-value=0.36  Score=54.19  Aligned_cols=40  Identities=20%  Similarity=0.202  Sum_probs=27.4

Q ss_pred             cHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEE
Q 043943          729 TYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKK  769 (775)
Q Consensus       729 ~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~  769 (775)
                      ++......+..|...++||+|+||+||+|.+.+. .+++|+
T Consensus       324 ~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~  363 (535)
T PRK09605        324 TWIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGR-DAVIKE  363 (535)
T ss_pred             eeccccccccccCccceeccCCcEEEEEEeecCc-cceeEE
Confidence            3444344455556778999999999999998554 444443

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=86.08  E-value=0.6  Score=50.12  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=27.5

Q ss_pred             eEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943          744 YCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL  774 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~  774 (775)
                      .+||+|-||.|---++.++..||||.|+++.
T Consensus       544 ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a  574 (807)
T KOG1094|consen  544 EKIGEGQFGEVHLCEVEGPLKVAVKILRPDA  574 (807)
T ss_pred             hhhcCcccceeEEEEecCceEEEEeecCccc
Confidence            4599999999999999777999999998753

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=85.99  E-value=0.49  Score=43.82  Aligned_cols=31  Identities=32%  Similarity=0.506  Sum_probs=24.6

Q ss_pred             eEeecCCCCcEEEEEe-CCCCEEEEEEccCCC
Q 043943          744 YCIGKGAQGSLYKAKL-QSEDLIAVKKFNSQL  774 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~~~  774 (775)
                      ..||+|+||.|-|=.. .+|+..||||+...+
T Consensus        52 ~elGrGayG~vekmrh~~sg~imAvKri~~tv   83 (282)
T KOG0984|consen   52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRATV   83 (282)
T ss_pred             hhhcCCccchhhheeeccCCeEEEEeeehhhc
Confidence            4599999998765554 489999999987543

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=85.99  E-value=0.52  Score=30.72  Aligned_cols=10  Identities=10%  Similarity=0.444  Sum_probs=4.1

Q ss_pred             eeehhhHHHH
Q 043943          673 LIIMILLPLL  682 (775)
Q Consensus       673 ~~i~i~~~~~  682 (775)
                      +..+++++++
T Consensus        13 Ia~~VvVPV~   22 (40)
T PF08693_consen   13 IAVGVVVPVG   22 (40)
T ss_pred             EEEEEEechH
Confidence            3344444433

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=85.95  E-value=0.5  Score=51.11  Aligned_cols=31  Identities=29%  Similarity=0.447  Sum_probs=24.4

Q ss_pred             ceEeecCCCCcEEEEEeCC---C--CEEEEEEccCC
Q 043943          743 EYCIGKGAQGSLYKAKLQS---E--DLIAVKKFNSQ  773 (775)
Q Consensus       743 ~~~iG~Gg~G~VYkg~l~~---g--~~vAVK~l~~~  773 (775)
                      ..+||+|-||.||+|+..+   |  ..||||.-+.+
T Consensus       394 ~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d  429 (974)
T KOG4257|consen  394 KRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTD  429 (974)
T ss_pred             HHhhcCCcccceeeeEecccccCcceeeeeehhccC
Confidence            4669999999999999853   3  36899987653

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=85.90  E-value=0.81  Score=49.85  Aligned_cols=31  Identities=26%  Similarity=0.437  Sum_probs=26.5

Q ss_pred             ceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943          743 EYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ  773 (775)
Q Consensus       743 ~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~  773 (775)
                      ..+||+|.||.|-|+.=. .|+.||||.++..
T Consensus       191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~  222 (586)
T KOG0667|consen  191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK  222 (586)
T ss_pred             EEEecccccceeEEEEecCCCcEEEEEeeccC
Confidence            467999999999999864 5899999999754

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=85.14  E-value=0.46  Score=41.47  Aligned_cols=33  Identities=27%  Similarity=0.504  Sum_probs=19.8

Q ss_pred             cceeeehhhHHHHHHHHHHHHHHhhheeccccc
Q 043943          670 VKKLIIMILLPLLGVLALSIISIGLLFNSRRTK  702 (775)
Q Consensus       670 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~r~~~  702 (775)
                      .+.+++++++++.++++++++++++++++|+++
T Consensus        47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kk   79 (154)
T PF04478_consen   47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKK   79 (154)
T ss_pred             CccEEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence            345667777776666666655555555555544

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PHA03207 serine/threonine kinase US3; Provisional

Probab=84.93  E-value=0.85  Score=49.00  Aligned_cols=34  Identities=12%  Similarity=0.311  Sum_probs=27.5

Q ss_pred             ccccceEeecCCCCcEEEEEeC---CCCEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ---SEDLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~---~g~~vAVK~l~~  772 (775)
                      .|.....||+|+||.||++...   .+..||||++..
T Consensus        93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~  129 (392)
T PHA03207         93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG  129 (392)
T ss_pred             ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc
Confidence            4666678999999999999763   357899999864

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=84.55  E-value=0.76  Score=48.60  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=25.6

Q ss_pred             eEeecCCCCcEEEEEeCC-CCEEEEEEccC
Q 043943          744 YCIGKGAQGSLYKAKLQS-EDLIAVKKFNS  772 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~~  772 (775)
                      .+||+|.||.||+++-.. |+.+|+|.+..
T Consensus        41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k   70 (382)
T KOG0032|consen   41 RELGRGQFGVVYLCREKSTGKEVACKVIPK   70 (382)
T ss_pred             hhhCCCCceEEEEEEecCCCceeEEEEeeh
Confidence            569999999999999875 99999999853

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.26  E-value=0.84  Score=26.73  Aligned_cols=18  Identities=50%  Similarity=0.643  Sum_probs=9.2

Q ss_pred             CCCcEEeCCCCcCcccCC
Q 043943          589 ESLVKLNLSYNQLSGFIP  606 (775)
Q Consensus       589 ~~L~~L~ls~n~l~~~~p  606 (775)
                      ++|+.|+|++|++....+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555554433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.26  E-value=0.84  Score=26.73  Aligned_cols=18  Identities=50%  Similarity=0.643  Sum_probs=9.2

Q ss_pred             CCCcEEeCCCCcCcccCC
Q 043943          589 ESLVKLNLSYNQLSGFIP  606 (775)
Q Consensus       589 ~~L~~L~ls~n~l~~~~p  606 (775)
                      ++|+.|+|++|++....+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            345555555555554433

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=84.19  E-value=0.87  Score=51.34  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=27.6

Q ss_pred             cccceEeecCCCCcEEEEEeCCC-CEEEEEEcc
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQSE-DLIAVKKFN  771 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~~g-~~vAVK~l~  771 (775)
                      ..-+++|-+|||+.||-+....| ..+|+||+-
T Consensus        39 v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~   71 (738)
T KOG1989|consen   39 VTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMY   71 (738)
T ss_pred             EEEEEEEccCCcEEEEEEEecCCCceeeeeeee
Confidence            34468899999999999999766 999999984

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.17  E-value=0.15  Score=47.04  Aligned_cols=80  Identities=19%  Similarity=0.146  Sum_probs=38.7

Q ss_pred             CcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccC-Cccc-cCCCCCcEEEccCCC-ccCcCChhhhcCCCCCEEE
Q 043943          422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSI-PPEI-GNSSKLQVLNLSSNH-IGGKIPMELGRLSSLNKLI  498 (775)
Q Consensus       422 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~-~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~  498 (775)
                      ++.++-+++.+..+--..+..+++++.|.+.+|.--+.. -..+ .-.++|+.|++++|. |+...-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            455566666555544445555566666666555322110 0000 123456666666553 4443344455555555555


Q ss_pred             cCC
Q 043943          499 LNK  501 (775)
Q Consensus       499 L~~  501 (775)
                      |.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.12  E-value=0.39  Score=27.57  Aligned_cols=13  Identities=38%  Similarity=0.649  Sum_probs=4.9

Q ss_pred             CCCEEEccCCcCc
Q 043943          541 KVHYLNLSNNEFS  553 (775)
Q Consensus       541 ~L~~L~Ls~n~l~  553 (775)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.70  E-value=0.023  Score=53.15  Aligned_cols=85  Identities=19%  Similarity=0.189  Sum_probs=47.4

Q ss_pred             cccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCC
Q 043943          102 QISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL  181 (775)
Q Consensus       102 ~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  181 (775)
                      .+..+..-+.||++.|.+. .+-..|+-++.|..|+++.|.+. ..|..+..+..+..+++..|..+ ..|.++...+++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            4556666777777777655 23344666667777777777665 55666655555555555444333 234444444444


Q ss_pred             CEEeccCC
Q 043943          182 STLDLSLN  189 (775)
Q Consensus       182 ~~L~l~~n  189 (775)
                      +++++-.+
T Consensus       114 k~~e~k~~  121 (326)
T KOG0473|consen  114 KKNEQKKT  121 (326)
T ss_pred             chhhhccC
Confidence            44444443

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=83.47  E-value=1.1  Score=43.33  Aligned_cols=36  Identities=6%  Similarity=-0.023  Sum_probs=31.0

Q ss_pred             hcccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ  773 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~  773 (775)
                      .+.|...+++|.||||.||...- ++..+|||.+.+.
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~   65 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPK   65 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechh
Confidence            57788899999999999999766 6778999999754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.74  E-value=1  Score=26.40  Aligned_cols=13  Identities=62%  Similarity=0.764  Sum_probs=5.7

Q ss_pred             CCCEEECCCCccc
Q 043943          517 ELELLDLSENRLS  529 (775)
Q Consensus       517 ~L~~L~ls~n~l~  529 (775)
                      +|+.|+|++|++.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.74  E-value=1  Score=26.40  Aligned_cols=13  Identities=62%  Similarity=0.764  Sum_probs=5.7

Q ss_pred             CCCEEECCCCccc
Q 043943          517 ELELLDLSENRLS  529 (775)
Q Consensus       517 ~L~~L~ls~n~l~  529 (775)
                      +|+.|+|++|++.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=82.72  E-value=0.84  Score=45.56  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=25.7

Q ss_pred             ccccceEeecCCCCcEEEEE-eCCCCEEEEEE
Q 043943          739 DFDEEYCIGKGAQGSLYKAK-LQSEDLIAVKK  769 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~-l~~g~~vAVK~  769 (775)
                      +|.-..+||+|.||..+-|+ |-++++||||-
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKf   60 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKF   60 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEe
Confidence            35556789999999999997 34899999995

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=81.27  E-value=0.56  Score=48.22  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=29.9

Q ss_pred             hcccccceEeecCCCCcEEEEEeCC----CCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQS----EDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~~----g~~vAVK~l~~  772 (775)
                      -+.|...++||+|.|++||++.+-.    .+.||+|.+..
T Consensus        35 ~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~   74 (418)
T KOG1167|consen   35 SNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYR   74 (418)
T ss_pred             hhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccc
Confidence            3557788999999999999999843    56899999854

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=80.90  E-value=0.59  Score=47.57  Aligned_cols=42  Identities=12%  Similarity=0.216  Sum_probs=28.5

Q ss_pred             HHHHHHhcccccceEeecCCCCcEEEEEeCC------CCEEEEEEccC
Q 043943          731 DQIIRATNDFDEEYCIGKGAQGSLYKAKLQS------EDLIAVKKFNS  772 (775)
Q Consensus       731 ~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~------g~~vAVK~l~~  772 (775)
                      +||.-.-..|.-+.++-+|-||.||+|.|.+      -+.|-||.++.
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~  324 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQ  324 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHh
Confidence            3443333457777889999999999998753      34566666554

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=80.22  E-value=0.64  Score=44.74  Aligned_cols=31  Identities=29%  Similarity=0.375  Sum_probs=26.0

Q ss_pred             ccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          741 DEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       741 ~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .+++-||-|+||.|+...=| ||+.||.|++-
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~p   87 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMP   87 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcc
Confidence            34567999999999988765 89999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	775
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-37
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-15
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-36
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-15
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-10

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  152 bits (383), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 166/558 (29%), Positives = 236/558 (42%), Gaps = 39/558 (6%)
Query: 101 PQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXX 160
           P +     LQ+LD+S NKLSG     I   + L  L++ SN   G IP            
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 271
Query: 161 XXXXXXXXGYIPPVI-GNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI 219
                   G IP  + G   +L+ LDLS N   G+VP F G+ + L +L L +N+ SG +
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 220 P-STLGKLKCLSNLNMSMNHLSGAIPSSIGNV-RNLRSLFLYSNELSGSI-PKEIGNLR- 275
           P  TL K++ L  L++S N  SG +P S+ N+  +L +L L SN  SG I P    N + 
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 276 SLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNL 335
           +L  L L  N   G IP                    G+IP  +G+L  L DL+L +N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 336 TGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395
            G IP  +              +L+G IP  + N   L  + L  N   G IPK    L 
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
           NL  ++++ N+ SGNI  A +G   +L +LDL+ N F+G I +    F Q G +  + N 
Sbjct: 512 NLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIPA--AMFKQSGKI--AANF 566
Query: 456 ITGSIPPEIGNSSKLQVLNLSSN--HIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXX 513
           I G     I N    +  + + N     G    +L R               G       
Sbjct: 567 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 514 XXXXXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXX 573
                       N LS  IP  +G++  +  LNL +N+ S                    
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-------------------- 666
Query: 574 XNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK 633
                G IP ++ ++  L  L+LS N+L G IP     +  L+ ID+S N L GP+P   
Sbjct: 667 -----GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
Query: 634 AFRDAPAEALQGNRGLCG 651
            F   P      N GLCG
Sbjct: 722 QFETFPPAKFLNNPGLCG 739

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 177/432 (40%), Gaps = 75/432 (17%)
Query: 212 NNSLSGFIPSTLGKLKC---LSNLNMSMNHLSGAIPS--SIGNVRNLRSLFLYSNELSGS 266
           N S+SGF        KC   L++L++S N LSG + +  S+G+   L+ L + SN L   
Sbjct: 87  NGSVSGF--------KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 267 IPKEIG---NLRSLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLK 323
            P ++     L SL  LDLS N ++G                         I  ++   +
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVSR 195
Query: 324 C--LFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFN 381
           C  L  L++S NN +  IP  +G             +LSG   +AI    EL  L +  N
Sbjct: 196 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 382 YFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWG 441
            F GPIP     L +L  + + +N  +G I +   G   TL+ LDLS N+F+G +   +G
Sbjct: 255 QFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 442 RFPQLGTLDFSVNNITGSIPPE-IGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXX 500
               L +L  S NN +G +P + +     L+VL+LS                        
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS------------------------ 348
Query: 501 XXXXFGSXXXXXXXXXXXXXXXXXXNRLSNAIPGSLGNL-LKVHYLNLSNNEFSHKI-PT 558
                                    N  S  +P SL NL   +  L+LS+N FS  I P 
Sbjct: 349 ------------------------FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 559 QFEKXXXXXXXXXXXXNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSI 618
             +             N   G+IP  + N   LV L+LS+N LSG IP+    +  L  +
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 619 DISYNRLQGPVP 630
            +  N L+G +P
Sbjct: 445 KLWLNMLEGEIP 456

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 89/237 (37%), Gaps = 55/237 (23%)
Query: 397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
           L  + ++ N +SG++    V     L FLD+S NNF   I    G    L  LD S N +
Sbjct: 177 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXX 516
           +G     I   ++L++LN+SSN   G IP                               
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIP------------------------------- 261
Query: 517 XXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNF 576
                          +P     L  + YL+L+ N+F+ +IP                 N 
Sbjct: 262 --------------PLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 302
Query: 577 LEGEIPSQICNMESLVKLNLSYNQLSGFIP-NCFEDMHGLSSIDISYNRLQGPVPFS 632
             G +P    +   L  L LS N  SG +P +    M GL  +D+S+N   G +P S
Sbjct: 303 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 166/558 (29%), Positives = 236/558 (42%), Gaps = 39/558 (6%)
Query: 101 PQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXX 160
           P +     LQ+LD+S NKLSG     I   + L  L++ SN   G IP            
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274
Query: 161 XXXXXXXXGYIPPVI-GNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI 219
                   G IP  + G   +L+ LDLS N   G+VP F G+ + L +L L +N+ SG +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 220 P-STLGKLKCLSNLNMSMNHLSGAIPSSIGNV-RNLRSLFLYSNELSGSI-PKEIGNLR- 275
           P  TL K++ L  L++S N  SG +P S+ N+  +L +L L SN  SG I P    N + 
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 276 SLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNL 335
           +L  L L  N   G IP                    G+IP  +G+L  L DL+L +N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 336 TGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395
            G IP  +              +L+G IP  + N   L  + L  N   G IPK    L 
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
           NL  ++++ N+ SGNI  A +G   +L +LDL+ N F+G I +    F Q G +  + N 
Sbjct: 515 NLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIPA--AMFKQSGKI--AANF 569
Query: 456 ITGSIPPEIGNSSKLQVLNLSSN--HIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXX 513
           I G     I N    +  + + N     G    +L R               G       
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 514 XXXXXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXX 573
                       N LS  IP  +G++  +  LNL +N+ S                    
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-------------------- 669
Query: 574 XNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK 633
                G IP ++ ++  L  L+LS N+L G IP     +  L+ ID+S N L GP+P   
Sbjct: 670 -----GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
Query: 634 AFRDAPAEALQGNRGLCG 651
            F   P      N GLCG
Sbjct: 725 QFETFPPAKFLNNPGLCG 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 177/432 (40%), Gaps = 75/432 (17%)
Query: 212 NNSLSGFIPSTLGKLKC---LSNLNMSMNHLSGAIPS--SIGNVRNLRSLFLYSNELSGS 266
           N S+SGF        KC   L++L++S N LSG + +  S+G+   L+ L + SN L   
Sbjct: 90  NGSVSGF--------KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 267 IPKEIG---NLRSLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLK 323
            P ++     L SL  LDLS N ++G                         I  ++   +
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVSR 198
Query: 324 C--LFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFN 381
           C  L  L++S NN +  IP  +G             +LSG   +AI    EL  L +  N
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 382 YFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWG 441
            F GPIP     L +L  + + +N  +G I +   G   TL+ LDLS N+F+G +   +G
Sbjct: 258 QFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 442 RFPQLGTLDFSVNNITGSIPPE-IGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXX 500
               L +L  S NN +G +P + +     L+VL+LS                        
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS------------------------ 351
Query: 501 XXXXFGSXXXXXXXXXXXXXXXXXXNRLSNAIPGSLGNL-LKVHYLNLSNNEFSHKI-PT 558
                                    N  S  +P SL NL   +  L+LS+N FS  I P 
Sbjct: 352 ------------------------FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 559 QFEKXXXXXXXXXXXXNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSI 618
             +             N   G+IP  + N   LV L+LS+N LSG IP+    +  L  +
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 619 DISYNRLQGPVP 630
            +  N L+G +P
Sbjct: 448 KLWLNMLEGEIP 459

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 89/237 (37%), Gaps = 55/237 (23%)
Query: 397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
           L  + ++ N +SG++    V     L FLD+S NNF   I    G    L  LD S N +
Sbjct: 180 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXX 516
           +G     I   ++L++LN+SSN   G IP                               
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIP------------------------------- 264
Query: 517 XXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNF 576
                          +P     L  + YL+L+ N+F+ +IP                 N 
Sbjct: 265 --------------PLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 577 LEGEIPSQICNMESLVKLNLSYNQLSGFIP-NCFEDMHGLSSIDISYNRLQGPVPFS 632
             G +P    +   L  L LS N  SG +P +    M GL  +D+S+N   G +P S
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 4/221 (1%)
Query: 171 IPPVIGNLISLSTLDLS-LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL 229
           IP  + NL  L+ L +  +N L+G +P  +  LT L  L++ + ++SG IP  L ++K L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 230 SNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSL-SNLDLSINRLN 288
             L+ S N LSG +P SI ++ NL  +    N +SG+IP   G+   L +++ +S NRL 
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 289 GVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXX 348
           G IP                    G      G+ K    + L+ N+L   +   +G    
Sbjct: 188 GKIP-PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 349 XXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPK 389
                     + G++PQ +  L  L SL + FN   G IP+
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 11/224 (4%)
Query: 267 IPKEIGNLRSLSNLDLS-INRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCL 325
           IP  + NL  L+ L +  IN L G IP                    G+IP  +  +K L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 326 FDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVEL-VSLLLGFNYFR 384
             L+ S N L+G +P SI               +SG+IP + G+  +L  S+ +  N   
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 385 GPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRF- 443
           G IP  F NL NL  V +++N L G+ S  F G+      + L+ N+    ++ D G+  
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLF-GSDKNTQKIHLAKNS----LAFDLGKVG 241
Query: 444 --PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP 485
               L  LD   N I G++P  +     L  LN+S N++ G+IP
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 107/269 (39%), Gaps = 32/269 (11%)
Query: 386 PIPKNFKNLTNLVRVRMNQ-NNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP 444
           PIP +  NL  L  + +   NNL G I  A +     L +L ++H N  G I     +  
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXX 504
            L TLDFS N ++G++PP I +   L  +    N I G IP   G               
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG----------SFSKL 175
Query: 505 FGSXXXXXXXXXXXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQF--EK 562
           F S                  NRL+  IP +  N L + +++LS N         F  +K
Sbjct: 176 FTS-------------MTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDK 221
Query: 563 XXXXXXXXXXXXNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISY 622
                        F  G++       ++L  L+L  N++ G +P     +  L S+++S+
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 623 NRLQGPVPFSKAFRDAPAEALQGNRGLCG 651
           N L G +P     +     A   N+ LCG
Sbjct: 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	775
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-167
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-150
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-112
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-108
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-104
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-89
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-88
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-87
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-75
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-80
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-76
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-75
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-71
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-60
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-53
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-51
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-50
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-49
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-47
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-46
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-44
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-45
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-42
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-40
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-39
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-38
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-36
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-37
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-32
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  501 bits (1293), Expect = e-167
 Identities = 194/666 (29%), Positives = 293/666 (43%), Gaps = 50/666 (7%)

Query: 1   FSLPVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERV 60
           F    S     E   L+ +K  L    ++LLP W+ +       N C + G+ C  D +V
Sbjct: 2   FQASPSQSLYREIHQLISFKDVL--PDKNLLPDWSSNK------NPCTFDGVTCRDD-KV 52

Query: 61  VGINLTTTSLNGTLDEF--SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANK 118
             I+L++  LN        S  S   L  L L N+ + G +         L  LDLS N 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNS 111

Query: 119 LSGKIPP--EIGQLSFLSELSLYSNCLNGSIPQSLG-NLSKQSLLSLYNNSLSGYIPPVI 175
           LSG +     +G  S L  L++ SN L+     S G  L+   +L L  NS+SG      
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 176 ---GNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNL 232
                   L  L +S N++ G V   +    NL  L + +N+ S  IP  LG    L +L
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228

Query: 233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIP 292
           ++S N LSG    +I     L+ L + SN+  G IP     L+SL  L L+ N+  G IP
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286

Query: 293 SSI-GNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIP-SSIGNLRNLR 350
             + G  + L+ L L  N   G++P   G+   L  L LS NN +G +P  ++  +R L+
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346

Query: 351 LLYLYRNELSGSIPQAIGNL-VELVSLLLGFNYFRGPIPKNFKN--LTNLVRVRMNQNNL 407
           +L L  NE SG +P+++ NL   L++L L  N F GPI  N        L  + +  N  
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 408 SGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS 467
           +G I          L  L LS N   G I S  G   +L  L   +N + G IP E+   
Sbjct: 407 TGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 468 SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENR 527
             L+ L L  N + G+IP  L   ++LN + L+ N+L G +P  IG L  L +L LS N 
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525

Query: 528 LSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNF----------- 576
            S  IP  LG+   + +L+L+ N F+  IP    K   +++   ++              
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585

Query: 577 ----------LEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
                      +G    Q+  + +    N++     G     F++   +  +D+SYN L 
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

Query: 627 GPVPFS 632
           G +P  
Sbjct: 646 GYIPKE 651

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  456 bits (1175), Expect = e-150
 Identities = 177/617 (28%), Positives = 262/617 (42%), Gaps = 67/617 (10%)

Query: 63  INLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK 122
           +++++ + +  +          L  L++  N+L G     IS   +L+ L++S+N+  G 
Sbjct: 205 LDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262

Query: 123 IPPEIGQLSFLSELSLYSNCLNGSIPQSL-GNLSKQSLLSLYNNSLSGYIPPVIGNLISL 181
           IPP    L  L  LSL  N   G IP  L G     + L L  N   G +PP  G+   L
Sbjct: 263 IPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320

Query: 182 STLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKC-LSNLNMSMNHL 239
            +L LS N   G +P   L  +  L  L L  N  SG +P +L  L   L  L++S N+ 
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 240 SGAIPSSIGNV--RNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGN 297
           SG I  ++       L+ L+L +N  +G IP  + N   L +L LS N L+G IPSS+G+
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 298 SNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357
            + L  L L+ N L G IP+E+  +K L  L L  N+LTG IPS + N  NL  + L  N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 358 ELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVG 417
            L+G IP+ IG L  L  L L  N F G IP    +  +L+ + +N N  +G I  A   
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-- 558

Query: 418 TYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVN--NITGSIPPEIGNSSKLQVLNL 475
                    ++ N   G+                + N     G    ++   S     N+
Sbjct: 559 ---FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615

Query: 476 SSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGS 535
           +S   GG          S+  L ++ N L G +P EIG++  L +L+L  N +S      
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS------ 669

Query: 536 LGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLN 595
                                                      G IP ++ ++  L  L+
Sbjct: 670 -------------------------------------------GSIPDEVGDLRGLNILD 686

Query: 596 LSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKG 655
           LS N+L G IP     +  L+ ID+S N L GP+P    F   P      N GLCG    
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG--YP 744

Query: 656 LSSCKAFRSSRRASVKK 672
           L  C    +   A  ++
Sbjct: 745 LPRCDPSNADGYAHHQR 761

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (258), Expect = 8e-23
 Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 6/150 (4%)

Query: 489 GRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLS 548
            +++S++      N  F ++   + +LT LE L LS + ++ ++         +  L+LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 549 NNEFSHKIPTQFEKLQL-QLSELDLSQNFLEGEIP-SQICNMESLVKLNLSYNQLSGFIP 606
            N  S  + T         L  L++S N L+     S    + SL  L+LS N +SG   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 607 NCFEDMHGLSS---IDISYNRLQGPVPFSK 633
             +    G      + IS N++ G V  S+
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVDVSR 198

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 542 VHYLNLSNNEFS---HKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSY 598
           V  ++LS+   +     + +    L   L  L LS + + G +        SL  L+LS 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLT-GLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109

Query: 599 NQLSGFIPNCFE--DMHGLSSIDISYNRLQGPVPFSKAFR 636
           N LSG +          GL  +++S N L  P   S   +
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  355 bits (912), Expect = e-112
 Identities = 141/621 (22%), Positives = 233/621 (37%), Gaps = 34/621 (5%)

Query: 63  INLTTTSLNG-TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG 121
           ++      +   L +       ++  LNL +N+L  +     ++  +L  LD+  N +S 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL 181
             P    +L  L  L+L  N L+    ++    +  + L L +NS+            +L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 182 STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKC--LSNLNMSMNHL 239
            TLDLS N L  +       L NL  L L NN +       L       L  L +S N +
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG---NLRSLSNLDLSINRLNGVIPSSIG 296
               P     +  L  LFL + +L  S+ +++       S+ NL LS ++L+    ++  
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 297 NSN--NLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYL 354
                NL++L L  N L+         L  L    L  NN+  +   S+  L N+R L L
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 355 YRN---------ELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQN 405
            R+          L      +   L  L  L +  N   G     F  L NL  + ++ +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 406 NLSGN--ISEAFVG-TYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPP 462
             S     +E FV   +  L  L+L+ N      S  +     L  LD  +N I   +  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 463 -EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQL--FGSLPPEIGTLTELE 519
            E      +  + LS N            + SL +L+L +  L    S P     L  L 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 520 LLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSH--------KIPTQFEKLQLQLSELD 571
           +LDLS N ++N     L  L K+  L+L +N  +               + L   L  L+
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILN 542

Query: 572 LSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP- 630
           L  N  +        ++  L  ++L  N L+    + F +   L S+++  N +      
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 631 -FSKAFRDAPAEALQGNRGLC 650
            F  AFR+     ++ N   C
Sbjct: 603 VFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  345 bits (887), Expect = e-108
 Identities = 137/612 (22%), Positives = 225/612 (36%), Gaps = 34/612 (5%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSF 132
            L   +F+ +  L  L++  N +  + P    +L  L+ L+L  N+LS          + 
Sbjct: 39  RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98

Query: 133 LSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL- 191
           L+EL L SN +                L L +N LS         L +L  L LS N++ 
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 192 -IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG-- 248
            + S    +   ++L  L L +N +  F P     +  L  L ++   L  ++   +   
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 249 -NVRNLRSLFLYSNELSGSIPKEIGNLR--SLSNLDLSINRLNGVIPSSIGNSNNLSILY 305
               ++R+L L +++LS +       L+  +L+ LDLS N LN V   S      L   +
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 306 LYSNQLSGSIPKEIGNLKCL---------FDLELSMNNLTGVIPSSIGNLRNLRLLYLYR 356
           L  N +       +  L  +             +S+ +L  +   S   L+ L  L +  
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 357 NELSGSIPQAIGNLVELVSLLLGFNY--FRGPIPKNFKNLTN--LVRVRMNQNNLSGNIS 412
           N++ G        L+ L  L L  ++   R    + F +L +  L  + + +N +S   S
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 413 EAFVGTYPTLSFLDLSHNNFHGQISSD-WGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQ 471
           +AF      L  LDL  N    +++   W     +  +  S N               LQ
Sbjct: 399 DAF-SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 472 VLNLSSNHIGG--KIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLS 529
            L L    +      P     L +L  L L+ N +       +  L +LE+LDL  N L+
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 530 --------NAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEI 581
                         L  L  +H LNL +N F       F+ L  +L  +DL  N L    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLP 576

Query: 582 PSQICNMESLVKLNLSYNQLSGFIPNCFED-MHGLSSIDISYNRLQGPVPFSKAFRDAPA 640
            S   N  SL  LNL  N ++      F      L+ +D+ +N           F +   
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636

Query: 641 EALQGNRGLCGD 652
           E       L   
Sbjct: 637 ETHTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  311 bits (798), Expect = 1e-95
 Identities = 130/569 (22%), Positives = 209/569 (36%), Gaps = 37/569 (6%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSF 132
            L + +F+   +L  L+L +N +  I      +   L  LDLS N LS        QL  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 133 LSELSLYSNCLNGSIPQSLGNLSKQSL--LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQ 190
           L EL L +N +     + L   +  SL  L L +N +  + P     +  L  L L+  Q
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 191 LIGSVP---FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKC--LSNLNMSMNHLSGAIPS 245
           L  S+          T++  L L N+ LS    +T   LK   L+ L++S N+L+     
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 246 SIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDL---------SINRLNGVIPSSIG 296
           S   +  L   FL  N +       +  L ++  L+L         S+  L  +   S  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 297 NSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIG----NLRNLRLL 352
               L  L +  N + G        L  L  L LS +  +    ++          L +L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 353 YLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKN-FKNLTNLVRVRMNQNNLSGNI 411
            L +N++S     A   L  L  L LG N     +    ++ L N+  + ++ N      
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 412 SEAFVGTYPTLSFLDLSHNNFHG--QISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSK 469
             +F    P+L  L L            S +     L  LD S NNI       +    K
Sbjct: 447 RNSFALV-PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 470 LQVLNLSSNHI--------GGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELL 521
           L++L+L  N++         G     L  LS L+ L L  N            L EL+++
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 522 DLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEI 581
           DL  N L+        N + +  LNL  N  +      F      L+ELD+  N  +   
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 582 PSQICNMESLVK-LNLSYNQLSGFIPNCF 609
                ++   V  +N ++  +     +  
Sbjct: 626 E----SIAWFVNWINETHTNIPELSSHYL 650

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  333 bits (857), Expect = e-104
 Identities = 86/567 (15%), Positives = 179/567 (31%), Gaps = 49/567 (8%)

Query: 78  SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG----KIPPEIGQLSFL 133
           S +S   +  L+L      G +P  I QL +L+ L L ++          P  I      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 134 SELSLYSNCLNGSIPQSLGNLSKQSL--LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL 191
            +          +            L    + ++     I       +  + +    N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 192 IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVR 251
              V   +  LT L   ++ N+           + +                     N++
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ-----QYKTEDLKWDNLK 249

Query: 252 NLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRL--------NGVIPSSIGNSNNLSI 303
           +L  + +Y+      +P  +  L  +  ++++ NR         +    +       + I
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 304 LYLYSNQL-SGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGS 362
           +Y+  N L +  +   +  +K L  LE   N L G +P + G+   L  L L  N+++  
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 363 IPQAIGNLVELVSLLLGFNYFRG-PIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPT 421
                G   ++ +L    N  +  P   + K+++ +  +  + N +     + F    PT
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 422 ------LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITG-------SIPPEIGNSS 468
                 +S ++LS+N         +     L +++   N +T               N+ 
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488

Query: 469 KLQVLNLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSE-- 525
            L  ++L  N +           L  L  + L+ N      P +    + L+   +    
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQR 547

Query: 526 ----NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEI 581
               NR     P  +     +  L + +N+           +      LD+  N      
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNIS----VLDIKDNPNISID 603

Query: 582 PSQICNMESLVKLNLSYNQLSGFIPNC 608
            S +C         L Y++    I  C
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQD-IRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  311 bits (798), Expect = 4e-96
 Identities = 93/617 (15%), Positives = 195/617 (31%), Gaps = 57/617 (9%)

Query: 1   FSLPVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVN-ATKKNLCAWS---GIYCNH 56
             L  +++  ++  AL +   +L   + S     T    N    K L  W    G+  N 
Sbjct: 20  IKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS 79

Query: 57  DERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFG----IIPPQISQLFKLQYL 112
           + RV G++L     +G + + +     +L  L L ++          P  IS     +  
Sbjct: 80  NGRVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 113 DLSANKLSGKIPPEIGQLSF--LSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGY 170
                           +  F  L +  + S+    SI +S     K + +   +N+++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 171 IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
           +   +  L  L    +  +  +           N                     LK L+
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLT 252

Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL--------SGSIPKEIGNLRSLSNLDL 282
           ++ +        +P+ +  +  ++ + +  N                +      +  + +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 283 SINRL-NGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPS 341
             N L    + +S+     L +L    NQL G +P   G+   L  L L+ N +T +  +
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN 371

Query: 342 SIGNLRNLRLLYLYRNELSG-SIPQAIGNLVELVSLLLGFNYFRG-------PIPKNFKN 393
             G    +  L    N+L          ++  + ++   +N           P+      
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 394 LTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHG-------QISSDWGRFPQL 446
             N+  + ++ N +S    E F  T   LS ++L  N             + ++     L
Sbjct: 432 GINVSSINLSNNQISKFPKELF-STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 447 GTLDFSVNNITGSIPPEI--GNSSKLQVLNLSSNHIGGKIPMELGRLSSL------NKLI 498
            ++D   N +T  +  +        L  ++LS N      P +    S+L      N+  
Sbjct: 491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548

Query: 499 LNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPT 558
              N+     P  I     L  L +  N +         N+     L++ +N       +
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLS 605

Query: 559 QFEKLQLQLSELDLSQN 575
                 ++     L  +
Sbjct: 606 YVCPY-IEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  239 bits (613), Expect = 2e-69
 Identities = 76/466 (16%), Positives = 147/466 (31%), Gaps = 60/466 (12%)

Query: 78  SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL------------------ 119
           S         +   +N +  +    + +L KL+   +  +                    
Sbjct: 178 SSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

Query: 120 -SGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL--------SGY 170
                  +   L  L+++ +Y+      +P  L  L +  L+++  N             
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 171 IPPVIGNLISLSTLDLSLNQLI-GSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL 229
                     +  + +  N L    V   L  +  L  L    N L G +P+  G    L
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKL 355

Query: 230 SNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG-SIPKEIGNLRSLSNLDLSINRLN 288
           ++LN++ N ++    +  G    + +L    N+L       +  ++  +S +D S N + 
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 289 GV-------IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV--- 338
            V       +  +     N+S + L +NQ+S    +       L  + L  N LT +   
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 339 ----IPSSIGNLRNLRLLYLYRNELSGSIPQ-AIGNLVELVSLLLGFNYFRGPIPKNFKN 393
                  +  N   L  + L  N+L+          L  LV + L +N F    P    N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

Query: 394 LTNLVRVRMNQ------NNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447
            + L    +        N       E      P+L+ L +  N+            P + 
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGI-TLCPSLTQLQIGSNDIRKVNEK---ITPNIS 590

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNH---IGGKIPMELGR 490
            LD   N         +    +  +  L  +    I G   +++ R
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 5e-20
 Identities = 23/183 (12%), Positives = 50/183 (27%), Gaps = 10/183 (5%)

Query: 455 NITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGT 514
           +  G       N +  + L++     G    + L     +  L L      G +P  IG 
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPG----VSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103

Query: 515 LTELELLDLSENRLS----NAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ-LQLSE 569
           LTELE+L L  +          P  +   +           +         +     L +
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 570 LDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPV 629
             ++ +  +  I           ++    N ++  +      +  L    +  +      
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 630 PFS 632
              
Sbjct: 223 ICE 225

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  293 bits (752), Expect = 1e-89
 Identities = 130/564 (23%), Positives = 215/564 (38%), Gaps = 31/564 (5%)

Query: 64  NLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKI 123
           N+T   +     +   +       L+L  N L  +         +LQ LDLS  ++    
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 124 PPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLST 183
                 LS LS L L  N +      +   LS    L     +L+      IG+L +L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 184 LDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN----LNMSMNH 238
           L+++ N +    +P +  NLTNL  L L +N +     + L  L  +      L++S+N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 239 LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKE-IGNLRSLSNLDLSINRLNG------VI 291
           ++   P +   +  L  L L +N  S ++ K  I  L  L    L +             
Sbjct: 189 MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 292 PSSIGNSNNLSILYLYSNQLSGS---IPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRN 348
            S++    NL+I       L      I      L  +    L    +  V   S      
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFG 305

Query: 349 LRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLS 408
            + L L   +        + +L       L F   +G    +  +L +L  + +++N LS
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSL-----KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 409 --GNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-G 465
             G  S++  G   +L +LDLS N     +SS++    QL  LDF  +N+       +  
Sbjct: 361 FKGCCSQSDFG-TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 466 NSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLS 524
           +   L  L++S  H           LSSL  L +  N    +  P+I   L  L  LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 525 ENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQ 584
           + +L    P +  +L  +  LN+S+N F       ++ L   L  LD S N +      +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQE 537

Query: 585 ICNME-SLVKLNLSYNQLSGFIPN 607
           + +   SL  LNL+ N  +    +
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  289 bits (742), Expect = 2e-88
 Identities = 123/570 (21%), Positives = 206/570 (36%), Gaps = 32/570 (5%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSF 132
            L  +SF SFP+L  L+L   E+  I       L  L  L L+ N +          LS 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 133 LSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL-SGYIPPVIGNLISLSTLDLSLNQL 191
           L +L      L       +G+L     L++ +N + S  +P    NL +L  LDLS N++
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 192 IGSVPFFLGNLTNL----VTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPS-S 246
                  L  L  +    ++L L  N ++   P    +++ L  L +  N  S  +    
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTC 220

Query: 247 IGNVRNLRSLFLYSNELSGSIPKE---IGNLRSLSNLDLSINRLN------GVIPSSIGN 297
           I  +  L    L   E       E      L  L NL +   RL         I      
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 298 SNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357
             N+S   L S  +                LEL            + +L+ L        
Sbjct: 281 LTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN--- 335

Query: 358 ELSGSIPQAIGNLVELVSLLLGFN--YFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAF 415
              G    +  +L  L  L L  N   F+G   ++    T+L  + ++ N +   +S  F
Sbjct: 336 --KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392

Query: 416 VGTYPTLSFLDLSHNNFHGQIS-SDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLN 474
           +G    L  LD  H+N       S +     L  LD S  +   +        S L+VL 
Sbjct: 393 LGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 475 LSSNHIGGKI-PMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIP 533
           ++ N       P     L +L  L L++ QL    P    +L+ L++L++S N   +   
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 534 GSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQ--ICNMESL 591
                L  +  L+ S N        + +     L+ L+L+QN        Q  +  ++  
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 571

Query: 592 VKLNLSYNQLSGFIPNCFEDMHGLSSIDIS 621
            +L +   ++    P+  + M  + S++I+
Sbjct: 572 RQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  287 bits (737), Expect = 1e-87
 Identities = 116/536 (21%), Positives = 184/536 (34%), Gaps = 31/536 (5%)

Query: 113 DLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIP 172
                    KIP  +        L L  N L      S  +  +  +L L    +     
Sbjct: 13  QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 173 PVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNL 232
               +L  LSTL L+ N +          L++L  L     +L+      +G LK L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 233 NMSMNHL-SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN----LDLSINRL 287
           N++ N + S  +P    N+ NL  L L SN++      ++  L  +      LDLS+N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 288 NGVIPSSIGNSNNLSILYLYSNQLSGSIPKE-IGNLKCLFDLELSMN------NLTGVIP 340
           N + P +      L  L L +N  S ++ K  I  L  L    L +       NL     
Sbjct: 190 NFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 341 SSIGNLRNLRLLYLYRNELSGS---IPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397
           S++  L NL +       L      I      L  + S  L            F      
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGW 306

Query: 398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNIT 457
             + +         +          S   L+  +  G  +      P L  LD S N ++
Sbjct: 307 QHLELVNCKFGQFPTLKL------KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 458 --GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GT 514
             G        ++ L+ L+LS N +   +      L  L  L    + L       +  +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 515 LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQ 574
           L  L  LD+S      A  G    L  +  L ++ N F              L+ LDLSQ
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 575 NFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630
             LE   P+   ++ SL  LN+S+N         ++ ++ L  +D S N +     
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  207 bits (528), Expect = 5e-58
 Identities = 86/430 (20%), Positives = 141/430 (32%), Gaps = 40/430 (9%)

Query: 85  LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPE-IGQLSFLSELSLYSNCL 143
            L L+L  N +  I  P   +  +L  L L  N  S  +    I  L+ L    L     
Sbjct: 179 NLSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 144 NGSIP---------QSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS 194
                         + L NL+ +     Y +     I  +   L ++S+  L    +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 195 VPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLK-------------------CLSNLNMS 235
             F          L L N     F    L  LK                    L  L++S
Sbjct: 298 KDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355

Query: 236 MNHLS--GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPS 293
            N LS  G    S     +L+ L L  N +   +      L  L +LD   + L  +   
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 294 SI-GNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVI-PSSIGNLRNLRL 351
           S+  +  NL  L +       +       L  L  L+++ N+      P     LRNL  
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 352 LYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNI 411
           L L + +L    P A  +L  L  L +  N F       +K L +L  +  + N++  + 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 412 SEAFVGTYPTLSFLDLSHNNFHGQISSDWGR--FPQLGTLDFSVNNITGSIPPEIGNSSK 469
            +       +L+FL+L+ N+F                  L   V  +  + P +      
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP- 593

Query: 470 LQVLNLSSNH 479
           +  LN++   
Sbjct: 594 VLSLNITCQM 603

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  174 bits (444), Expect = 1e-46
 Identities = 77/385 (20%), Positives = 126/385 (32%), Gaps = 51/385 (13%)

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCL 325
            IP  +    S  NLDLS N L  +   S  +   L +L L   ++         +L  L
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 326 FDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRG 385
             L L+ N +  +   +   L +L+ L      L+      IG+L  L  L +  N  + 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 386 -PIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP 444
             +P+ F NLTNL                           LDLS N       +D     
Sbjct: 139 FKLPEYFSNLTNL-------------------------EHLDLSSNKIQSIYCTDLRVLH 173

Query: 445 QLG----TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME-LGRLSSLNKLIL 499
           Q+     +LD S+N +   I P      +L  L L +N     +    +  L+ L    L
Sbjct: 174 QMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 500 NKNQLFGS---LPPEIGTLTELELLDLSENRLS------NAIPGSLGNLLKVHYLNLSNN 550
              +          +   L  L  L + E RL+      + I      L  V   +L + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 551 EFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFE 610
                    +         L+L           ++ ++       L++    G       
Sbjct: 293 TIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSL-----KRLTFTSNKGGNAFSEV 344

Query: 611 DMHGLSSIDISYNRLQGPVPFSKAF 635
           D+  L  +D+S N L      S++ 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSD 369

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  292 bits (749), Expect = 3e-89
 Identities = 105/551 (19%), Positives = 187/551 (33%), Gaps = 17/551 (3%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSI 147
            N  N  L  I P  +      + L+ S N L         +L  L+ L L    +    
Sbjct: 17  YNCENLGLNEI-PGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 148 PQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVT 207
             +  +  +   L L  N L       +    +L  L      +       L N   L +
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 208 LHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS-GS 266
           L+L +N +S          + L  L+   N +       + +++   +L L  N      
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 267 IPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSN--NLSILYLYSNQLSGSIPKEIGNLKC 324
           I     +     +L+    +   VI   + NS   +L +            P     L  
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 325 --LFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNY 382
             +  + L  +    +  ++      L+ L L    LS  +P  +  L  L  L+L  N 
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312

Query: 383 FRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSD--W 440
           F      +  N  +L  + +  N     +    +     L  LDLSH++       +   
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 441 GRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME-LGRLSSLNKLIL 499
                L +L+ S N              +L++L+L+   +  K        L  L  L L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 500 NKNQLFGSLPPEIGTLTELELLDLSENRLSNAI---PGSLGNLLKVHYLNLSNNEFSHKI 556
           + + L  S       L  L+ L+L  N           SL  L ++  L LS  + S   
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 557 PTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLS 616
              F  L+  ++ +DLS N L       + +++ +  LNL+ N +S  +P+    +    
Sbjct: 493 QHAFTSLK-MMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQR 550

Query: 617 SIDISYNRLQG 627
           +I++  N L  
Sbjct: 551 TINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  276 bits (708), Expect = 3e-83
 Identities = 102/532 (19%), Positives = 185/532 (34%), Gaps = 17/532 (3%)

Query: 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSG 169
           +  +     L+ +IP  +   +    L    N L      +   L   + L L    +  
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 170 YIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL 229
                  +   L TL L+ N LI      L     L  L      +S      L   K L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 230 SNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN- 288
            +L +  NH+S            L+ L   +N +     +++ +L+  +NL L++N  + 
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKC--LFDLELSMNNLTGVIPSSIGNL 346
             I     +S     L     Q    I K + N     L+       +   + P+    L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 347 RNLRL--LYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQ 404
             + +  + L ++               L  L L   +    +P     L+ L ++ ++ 
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSA 310

Query: 405 NNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDW-GRFPQLGTLDFSVNNITGS--IP 461
           N        +     P+L+ L +  N    ++ +        L  LD S ++I  S    
Sbjct: 311 NKFENLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 462 PEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELEL 520
            ++ N S LQ LNLS N               L  L L   +L           L  L++
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 521 LDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQL--QLSELDLSQNFLE 578
           L+LS + L  +       L  + +LNL  N F      +   LQ   +L  L LS   L 
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 579 GEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630
                   +++ +  ++LS+N+L+         + G+  ++++ N +   +P
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  274 bits (703), Expect = 1e-82
 Identities = 123/567 (21%), Positives = 209/567 (36%), Gaps = 24/567 (4%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSF 132
           T+   +FS   +L FL+L   +++ I         +L  L L+AN L       +     
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 133 LSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLI 192
           L  L      ++      L N      L L +N +S    P       L  LD   N + 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 193 GSVPFFLGNLTNL--VTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGN- 249
                 + +L     ++L+L  N ++G I           +LN         I   + N 
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 250 -VRNLRSLFLYSNELSGSIPKEIGNLRSLS--NLDLSINRLNGVIPSSIGNSNNLSILYL 306
            +++L        +     P     L  +S  +++L  +    +  ++    + L  L L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 307 YSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSI-PQ 365
            +  LS  +P  +  L  L  L LS N    +   S  N  +L  L +  N     +   
Sbjct: 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 366 AIGNLVELVSLLLGFN--YFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLS 423
            + NL  L  L L  +            +NL++L  + ++ N      +EAF    P L 
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLE 403

Query: 424 FLDLSHNNFHGQIS-SDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGG 482
            LDL+      + + S +     L  L+ S + +  S          LQ LNL  NH   
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 483 KIPME---LGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNL 539
               +   L  L  L  L+L+   L         +L  +  +DLS NRL+++   +L + 
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH- 522

Query: 540 LKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVK-LNLSY 598
           LK  YLNL++N  S  +P+    L  Q   ++L QN L+       C+    ++    + 
Sbjct: 523 LKGIYLNLASNHISIILPSLLPILS-QQRTINLRQNPLDC-----TCSNIYFLEWYKENM 576

Query: 599 NQLSGFIPNCFEDMHGLSSIDISYNRL 625
            +L        E+   L  + +S   L
Sbjct: 577 QKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (546), Expect = 2e-60
 Identities = 85/409 (20%), Positives = 148/409 (36%), Gaps = 14/409 (3%)

Query: 232 LNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVI 291
            N     L+  IP ++ N  +   L    N L          L +L+ LDL+  ++  + 
Sbjct: 17  YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 292 PSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRL 351
             +  + + L  L L +N L       +   K L  L      ++ +    + N + L  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 352 LYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL--VRVRMNQNNLSG 409
           LYL  N +S           +L  L    N       ++  +L     + + +N N+++G
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 410 NISEAFVGTYPTLSFLDLSHNNFHGQI--SSDWGRFPQLGTLDFSVNNITGSIPPEIGNS 467
               AF         L+         I           L    F   +     P      
Sbjct: 194 IEPGAFDS--AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 468 SK--LQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSE 525
            +  ++ +NL  ++            S L +L L    L   LP  +  L+ L+ L LS 
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSA 310

Query: 526 NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLE--GEIPS 583
           N+  N    S  N   + +L++  N    ++ T   +    L ELDLS + +E       
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 584 QICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS 632
           Q+ N+  L  LNLSYN+        F++   L  +D+++ RL+     S
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  289 bits (740), Expect = 1e-85
 Identities = 94/586 (16%), Positives = 186/586 (31%), Gaps = 71/586 (12%)

Query: 85  LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLN 144
           +  L+L      G +P  I QL +L+ L    +  +        +           + + 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 145 GSIPQ-SLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL------IGSVPF 197
               +  L    + +L  L  ++++    P +  +   S + L   Q+      I  +  
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 198 FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLF 257
            +  LT L  ++  N+  +    +         + N            S  N+++L  + 
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 258 LYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPK 317
           LY+      +P  + +L  L +L+++ NR           +                +  
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR---------------LAD 542

Query: 318 EIGNLKCLFDLELSMNNLTGVIPS-SIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSL 376
           +      +    +  NNL     S S+  +  L LL    N++     +A G  V+L  L
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDL 600

Query: 377 LLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQ- 435
            L +N               +  +  + N L    +     +   +  +D S+N    + 
Sbjct: 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660

Query: 436 ----ISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG-------GKI 484
                S D  +     T+  S N I           S +  + LS+N +           
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 485 PMELGRLSSLNKLILNKNQLFGSLPPEI--GTLTELELLDLSENRLSNAIPGSLGNLLKV 542
                    L  + L  N+L  SL  +    TL  L  +D+S N  S+  P    N  ++
Sbjct: 721 DGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778

Query: 543 HYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLS 602
               + +                     D   N +  + P+ I    SL++L +  N + 
Sbjct: 779 KAFGIRHQ-------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

Query: 603 GFIPNCFEDMHGLSSIDISYNRL-QGPVPFSKAFRDAPAEALQGNR 647
                  +    L  +DI+ N      V     + +A    L  ++
Sbjct: 820 KVDE---KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  260 bits (667), Expect = 2e-75
 Identities = 81/539 (15%), Positives = 183/539 (33%), Gaps = 52/539 (9%)

Query: 63  INLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK 122
           ++  T S   +   F        +     +          +    +L   DL  + ++  
Sbjct: 352 LSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411

Query: 123 IPPEIGQLSFLSELSLYSNCLNG------SIPQSLGNLSKQSLLSLYNNSLSGYIPPVIG 176
             PE+  +   S +SL    +         I +++  L+K  ++   N+  +        
Sbjct: 412 --PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA--- 466

Query: 177 NLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236
             +     +    +   +      NL +L  + L+N      +P  L  L  L +LN++ 
Sbjct: 467 --VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

Query: 237 NHLSG---------AIPSSIGNVRNLRSLFLYSNELSG-SIPKEIGNLRSLSNLDLSINR 286
           N              +         ++  ++  N L        +  +  L  LD   N+
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

Query: 287 LNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG-NLKCLFDLELSMNNLTGVIPS-SIG 344
           +      + G +  L+ L L  NQ+   IP++       +  L  S N L  +    +  
Sbjct: 585 VR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641

Query: 345 NLRNLRLLYLYRNELSG-----SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVR 399
           ++  +  +    N++       S        +   ++ L +N  +    + F   + +  
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 400 VRMNQNNLSGNISEAFVGTYPT------LSFLDLSHNNFHGQISSDW--GRFPQLGTLDF 451
           + ++ N ++     +             L+ +DL  N     +S D+     P L  +D 
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDV 760

Query: 452 SVNNITGSIPPEIGNSSKLQVLNL------SSNHIGGKIPMELGRLSSLNKLILNKNQLF 505
           S N  + S P +  NSS+L+   +        N I  + P  +    SL +L +  N + 
Sbjct: 761 SYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818

Query: 506 GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ 564
             +  ++    +L +LD+++N   +    S+   ++     L  ++           ++
Sbjct: 819 RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.5 bits (188), Expect = 2e-14
 Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 6/163 (3%)

Query: 473 LNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAI 532
            N   +  G +  ++L     +  L L      G +P  IG LTEL++L    +  + + 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 533 PGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLE-----GEIPSQICN 587
                  L         +         F     +L+  DL Q+ +        I      
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 588 MESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630
                ++    N+++  I    + +  L  I  + +       
Sbjct: 424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI 465

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  257 bits (660), Expect = 8e-80
 Identities = 85/286 (29%), Positives = 136/286 (47%), Gaps = 12/286 (4%)

Query: 122 KIPPEIGQLSFLS----ELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSG--YIPPVI 175
           +I  ++G  + LS         +    G +  +     + + L L   +L     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 176 GNLISLSTLDLS-LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNM 234
            NL  L+ L +  +N L+G +P  +  LT L  L++ + ++SG IP  L ++K L  L+ 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 235 SMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN-LDLSINRLNGVIPS 293
           S N LSG +P SI ++ NL  +    N +SG+IP   G+   L   + +S NRL G IP 
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 294 SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLY 353
           +  N  NL+ + L  N L G      G+ K    + L+ N+L   +   +G  +NL  L 
Sbjct: 193 TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD 250

Query: 354 LYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPK--NFKNLTNL 397
           L  N + G++PQ +  L  L SL + FN   G IP+  N +     
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  255 bits (655), Expect = 3e-79
 Identities = 91/312 (29%), Positives = 150/312 (48%), Gaps = 15/312 (4%)

Query: 11  EEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCN---HDERVVGINLTT 67
           ++ +ALL+ K  L   + + L SW  +    T      W G+ C+      RV  ++L+ 
Sbjct: 6   QDKQALLQIKKDL--GNPTTLSSWLPT----TDCCNRTWLGVLCDTDTQTYRVNNLDLSG 59

Query: 68  TSLNGTLD-EFSFSSFPDLLFLNLFN-NELFGIIPPQISQLFKLQYLDLSANKLSGKIPP 125
            +L        S ++ P L FL +   N L G IPP I++L +L YL ++   +SG IP 
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

Query: 126 EIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLST-L 184
            + Q+  L  L    N L+G++P S+ +L     ++   N +SG IP   G+   L T +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 185 DLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP 244
            +S N+L G +P    NL NL  + L  N L G      G  K    ++++ N L+  + 
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSIL 304
             +G  +NL  L L +N + G++P+ +  L+ L +L++S N L G IP   GN     + 
Sbjct: 239 -KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296

Query: 305 YLYSNQLSGSIP 316
              +N+     P
Sbjct: 297 AYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  245 bits (628), Expect = 3e-75
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 8/284 (2%)

Query: 230 SNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGS--IPKEIGNLRSLSNLDLS-INR 286
              +       G +  +      + +L L    L     IP  + NL  L+ L +  IN 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 287 LNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNL 346
           L G IP +I     L  LY+    +SG+IP  +  +K L  L+ S N L+G +P SI +L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 347 RNLRLLYLYRNELSGSIPQAIGNLVELVSLL-LGFNYFRGPIPKNFKNLTNLVRVRMNQN 405
            NL  +    N +SG+IP + G+  +L + + +  N   G IP  F NL NL  V +++N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 406 NLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIG 465
            L G+ S  F G+      + L+ N+    +    G    L  LD   N I G++P  + 
Sbjct: 208 MLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 466 NSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLP 509
               L  LN+S N++ G+IP + G L   +      N+     P
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  230 bits (590), Expect = 1e-69
 Identities = 86/354 (24%), Positives = 135/354 (38%), Gaps = 62/354 (17%)

Query: 314 SIPKEIGNLKCLFD----LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGS--IPQAI 367
            I K++GN   L       +       GV+  +      +  L L    L     IP ++
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 368 GNLVELVSL-LLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLD 426
            NL  L  L + G N   GPIP     LT L                          +L 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQL-------------------------HYLY 107

Query: 427 LSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPM 486
           ++H N  G I     +   L TLDFS N ++G++PP I +   L  +    N I G IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 487 ELGRLSSL-NKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYL 545
             G  S L   + +++N+L G +PP    L  L  +DLS N L        G+       
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN---- 222

Query: 546 NLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFI 605
                                  ++ L++N L  ++   +   ++L  L+L  N++ G +
Sbjct: 223 ---------------------TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260

Query: 606 PNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSC 659
           P     +  L S+++S+N L G +P     +     A   N+ LCG    L +C
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG--SPLPAC 312

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  256 bits (656), Expect = 7e-76
 Identities = 119/536 (22%), Positives = 192/536 (35%), Gaps = 30/536 (5%)

Query: 112 LDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYI 171
                 KLS K+P +I   S    + L  N L      S  N S+   L L    +    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 172 PPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN 231
                 L  LS L L+ N +    P     LT+L  L      L+      +G+L  L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 232 LNMSMNHLSGA-IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN----LDLSINR 286
           LN++ N +    +P+   N+ NL  + L  N +      ++  LR        LD+S+N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 287 LNGVIPSSIGNSNNLSILYLYSNQLSGSIPKE-IGNLKCLFDLELSMN------NLTGVI 339
           ++  I         L  L L  N  S +I K  + NL  L    L +       NL    
Sbjct: 193 IDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 340 PSSIGNLRNLRL--LYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397
           PS +  L ++ +    L               L  + ++ L     +    ++       
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKW 309

Query: 398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNIT 457
             + + +  L    +       P L  L L+ N   G IS      P L  LD S N ++
Sbjct: 310 QSLSIIRCQLKQFPTLDL----PFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALS 363

Query: 458 --GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPE-IGT 514
             G        ++ L+ L+LS N     +      L  L  L    + L          +
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422

Query: 515 LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQ 574
           L +L  LD+S         G    L  ++ L ++ N F     +        L+ LDLS+
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 575 NFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630
             LE         +  L  LN+S+N L     + +  ++ LS++D S+NR++    
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  255 bits (653), Expect = 2e-75
 Identities = 113/554 (20%), Positives = 190/554 (34%), Gaps = 37/554 (6%)

Query: 82  FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSN 141
                 ++L  N L  +     S   +LQ+LDLS  ++          L  LS L L  N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 142 CLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLG 200
            +    P S   L+    L      L+      IG LI+L  L+++ N +    +P +  
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 201 NLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN----LNMSMNHLSGAIPSSIGNVRNLRSL 256
           NLTNLV + L  N +     + L  L+        L+MS+N +   I         L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHEL 209

Query: 257 FLYSNELSGSIPKE-IGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSI 315
            L  N  S +I K  + NL  L    L +          I   + +  L   +       
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT------- 262

Query: 316 PKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVS 375
                    + +  L+  N           L N+  + L    +     + +    +  S
Sbjct: 263 ---------IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQS 311

Query: 376 LLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFH-- 433
           L +     +     +   L +L    +  N  S +  +  +   P+LS+LDLS N     
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISFKKVAL---PSLSYLDLSRNALSFS 365

Query: 434 GQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME-LGRLS 492
           G  S        L  LD S N     +        +LQ L+   + +           L 
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIP-GSLGNLLKVHYLNLSNNE 551
            L  L ++              LT L  L ++ N   +        N   + +L+LS  +
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 552 FSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFED 611
                   F+ L  +L  L++S N L     S    + SL  L+ S+N++          
Sbjct: 485 LEQISWGVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 612 MHGLSSIDISYNRL 625
              L+  +++ N +
Sbjct: 544 PKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  243 bits (621), Expect = 7e-71
 Identities = 114/547 (20%), Positives = 190/547 (34%), Gaps = 51/547 (9%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSF 132
            L  +SFS+F +L +L+L   E+  I       L  L  L L+ N +    P     L+ 
Sbjct: 46  ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

Query: 133 LSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGY-IPPVIGNLISLSTLDLSLNQL 191
           L  L      L       +G L     L++ +N +    +P    NL +L  +DLS N +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 192 IGSVPFFLGNLTNL----VTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPS-S 246
                  L  L       ++L +  N +          +K L  L +  N  S  I    
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTC 224

Query: 247 IGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNL--------DLSINRLNGVIPSSIGNS 298
           + N+  L    L   E       EI     +  L         L+               
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 299 NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNE 358
            N+S + L    +     +++        L +    L         +L  L+ L L  N+
Sbjct: 285 ANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNK 339

Query: 359 LSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVG- 417
            S                          I      L +L  + +++N LS +   ++   
Sbjct: 340 GS--------------------------ISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 418 TYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE-IGNSSKLQVLNLS 476
              +L  LDLS N     +S+++    +L  LDF  + +          +  KL  L++S
Sbjct: 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 477 SNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGS 535
             +           L+SLN L +  N    +    +    T L  LDLS+ +L     G 
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 536 LGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLN 595
              L ++  LN+S+N       + + +L   LS LD S N +E          +SL   N
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 596 LSYNQLS 602
           L+ N ++
Sbjct: 552 LTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  179 bits (456), Expect = 4e-48
 Identities = 90/493 (18%), Positives = 158/493 (32%), Gaps = 81/493 (16%)

Query: 145 GSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTN 204
           GS+   +  +         +  LS  +P  I +  S   +DLS N L     +   N + 
Sbjct: 2   GSLNPCIEVVP-NITYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 205 LVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS 264
           L  L L    +          L  LSNL ++ N +    P S   + +L +L     +L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 265 GSIPKEIGNLRSLSNLDLSINRLNGV-IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK 323
                 IG L +L  L+++ N ++   +P+   N  NL  + L  N +      ++  L+
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 324 CL----FDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLG 379
                   L++S+N +   I         L  L L  N  S +I                
Sbjct: 178 ENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIM--------------- 221

Query: 380 FNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSD 439
                       +NL  L   R+         +             D++ +         
Sbjct: 222 --------KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE-------- 265

Query: 440 WGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLIL 499
                       +  N       +    + +  ++L+   I  K   ++ +      L +
Sbjct: 266 ---------FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSI 314

Query: 500 NKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQ 559
            + QL    P     L  L+ L L+ N+ S  I      L  + YL+LS N  S      
Sbjct: 315 IRCQL-KQFPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 560 FEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSID 619
           +  L                          SL  L+LS+N     +   F  +  L  +D
Sbjct: 370 YSDLGT-----------------------NSLRHLDLSFNGAII-MSANFMGLEELQHLD 405

Query: 620 ISYNRLQGPVPFS 632
             ++ L+    FS
Sbjct: 406 FQHSTLKRVTEFS 418

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  134 bits (339), Expect = 5e-33
 Identities = 62/283 (21%), Positives = 100/283 (35%), Gaps = 8/283 (2%)

Query: 74  LDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP--PEIGQLS 131
           L +F     P L  L L  N+    I  +   L  L YLDLS N LS            +
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 132 FLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQ 190
            L  L L  N     +  +   L +   L   +++L          +L  L  LD+S   
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 191 LIGSVPFFLGNLTNLVTLHLFNNSLSGFIPS-TLGKLKCLSNLNMSMNHLSGAIPSSIGN 249
                      LT+L TL +  NS      S        L+ L++S   L          
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 250 VRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSN 309
           +  L+ L +  N L          L SLS LD S NR+            +L+   L +N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 310 QLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLL 352
            ++  I +    L+ + + +  + N+  +  ++   +    +L
Sbjct: 556 SVA-CICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVL 597

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  130 bits (330), Expect = 6e-32
 Identities = 70/357 (19%), Positives = 121/357 (33%), Gaps = 59/357 (16%)

Query: 289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG-NLKCLFDLELSMNNLTGVIPSSIGNLR 347
           G +   I    N++       +LS  +P +I  + K   +++LS N L  +   S  N  
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPSSTK---NIDLSFNPLKILKSYSFSNFS 56

Query: 348 NLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNL 407
            L+ L L R E+     +A   L  L +L+L  N  +   P +F  LT+L  +   +  L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 408 SGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS 467
           +   S        TL  L+++HN  H                          +P    N 
Sbjct: 117 ASLESFPIGQL-ITLKKLNVAHNFIHS-----------------------CKLPAYFSNL 152

Query: 468 SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENR 527
           + L  ++LS N+I      +L  L    ++                       LD+S N 
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQV--------------------NLSLDMSLNP 192

Query: 528 LSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICN 587
           +   I       +K+H L L  N  S  I     +    L    L     + E   +I  
Sbjct: 193 IDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 588 MESLVKL--------NLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFR 636
              +  L         L+Y          F  +  +S++ ++   ++      K F+
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  214 bits (546), Expect = 1e-60
 Identities = 115/530 (21%), Positives = 189/530 (35%), Gaps = 51/530 (9%)

Query: 113 DLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIP 172
                    KIP  +        L L  N L      S  +  +  +L L    +     
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 173 PVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNL 232
               +L  LSTL L+ N +          L++L  L     +L+      +G LK L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 233 NMSMNHL-SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN----LDLSINRL 287
           N++ N + S  +P    N+ NL  L L SN++      ++  L  +      LDLS+N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 288 NGVIPSSIGNSNNLSILYLYSNQLSGSIPKE-IGNLKCLFDLEL------SMNNLTGVIP 340
           N  I         L  L L +N  S ++ K  I  L  L    L      +  NL     
Sbjct: 190 NF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 341 SSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRV 400
           S++  L NL +       L                     +Y+   I   F  LTN+   
Sbjct: 249 SALEGLCNLTIEEFRLAYL---------------------DYYLDDIIDLFNCLTNVSSF 287

Query: 401 RMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSI 460
            +    +      ++   +  L  ++     F         +   L  L F+ N    + 
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGG-NA 340

Query: 461 PPEIGNSSKLQVLNLSSNHIG--GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTEL 518
             E+   S L+ L+LS N +   G         +SL  L L+ N +  ++      L +L
Sbjct: 341 FSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 398

Query: 519 ELLDLSENRLSNAIPGS-LGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFL 577
           E LD   + L      S   +L  + YL++S+          F  L   L  L ++ N  
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSF 457

Query: 578 EGEIPSQI-CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           +      I   + +L  L+LS  QL    P  F  +  L  ++++ N+L+
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  203 bits (519), Expect = 5e-57
 Identities = 122/514 (23%), Positives = 198/514 (38%), Gaps = 32/514 (6%)

Query: 82  FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSN 141
                 L+L  N L  +         +LQ LDLS  ++          LS LS L L  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 142 CLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL-IGSVPFFLG 200
            +      +   LS    L     +L+      IG+L +L  L+++ N +    +P +  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 201 NLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN----LNMSMNHLSGAIPSSIGNVRNLRSL 256
           NLTNL  L L +N +     + L  L  +      L++S+N ++  I         L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 257 FLYSNELSGSIPKE-IGNLRSLSNLDL------SINRLNGVIPSSIGNSNNLSILYLYSN 309
            L +N  S ++ K  I  L  L    L      +   L     S++    NL+I      
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 310 QLSGSIPKEIGNLKCLFDLE---LSMNNLTGVIPSSI-GNLRNLRLLYLYRNELSGSIPQ 365
            L   +   I    CL ++    L    +  V   S     ++L L+     +       
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---- 321

Query: 366 AIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLS--GNISEAFVGTYPTLS 423
               L  L  L    N           +L +L  + +++N LS  G  S++  GT  +L 
Sbjct: 322 --LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLK 376

Query: 424 FLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGG 482
           +LDLS N     +SS++    QL  LDF  +N+       +  +   L  L++S  H   
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 483 KIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLK 541
                   LSSL  L +  N    +  P+I   L  L  LDLS+ +L    P +  +L  
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 542 VHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQN 575
           +  LN+++N+        F++L   L ++ L  N
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLT-SLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  180 bits (459), Expect = 8e-49
 Identities = 109/476 (22%), Positives = 173/476 (36%), Gaps = 29/476 (6%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSF 132
           T+++ ++ S   L  L L  N +  +     S L  LQ L      L+      IG L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 133 LSELSLYSNCLN-GSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLS----TLDLS 187
           L EL++  N +    +P+   NL+    L L +N +       +  L  +     +LDLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 188 LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST-------LGKLKCLSNLNMSMNHLS 240
           LN  +  +         L  L L NN  S  +  T       L   + +     +  +L 
Sbjct: 186 LNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG---NLRSLSNLDLSINRLNGVIPSSIGN 297
               S++  + NL         L   +   I     L ++S+  L    +  V   S   
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--Y 302

Query: 298 SNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357
           +     L L + +       ++ +LK    L  + N           +L +L  L L RN
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKR---LTFTSNKGGNAFSEV--DLPSLEFLDLSRN 357

Query: 358 ELS--GSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAF 415
            LS  G   Q+      L  L L FN     +  NF  L  L  +    +NL      + 
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 416 VGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLN 474
             +   L +LD+SH +     +  +     L  L  + N+   +  P+I      L  L+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 475 LSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLS 529
           LS   +    P     LSSL  L +  NQL  S+P  I   LT L+ + L  N   
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (357), Expect = 2e-35
 Identities = 84/403 (20%), Positives = 155/403 (38%), Gaps = 30/403 (7%)

Query: 78  SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQY----LDLSANKLSGKIPPEIGQLSFL 133
            FS+  +L  L+L +N++  I    +  L ++      LDLS N ++  I P   +   L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202

Query: 134 SELSLYSNCLNGSIPQ-SLGNLSKQSLLSLY------NNSLSGYIPPVIGNLISLSTLDL 186
            +L+L +N  + ++ +  +  L+   +  L         +L  +    +  L +L+  + 
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 187 SLNQL---IGSVPFFLGNLTNLVTLHLFNNSLSGFIP-STLGKLKCLSNLNMSMNHLSGA 242
            L  L   +  +      LTN+ +  L + ++      S     + L  +N         
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT- 321

Query: 243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN--GVIPSSIGNSNN 300
                  +++L+ L   SN+   +  +   +L SL  LDLS N L+  G    S   + +
Sbjct: 322 -----LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 301 LSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSI-GNLRNLRLLYLYRNEL 359
           L  L L  N +  ++      L+ L  L+   +NL  +   S+  +LRNL  L +     
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 360 SGSIPQAIGNLVELVSLLLGFNYFRGPIPKN-FKNLTNLVRVRMNQNNLSGNISEAFVGT 418
             +       L  L  L +  N F+     + F  L NL  + ++Q  L      AF   
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 419 YPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIP 461
             +L  L+++ N         + R   L  +    N    S P
Sbjct: 494 -SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (324), Expect = 3e-31
 Identities = 72/375 (19%), Positives = 124/375 (33%), Gaps = 37/375 (9%)

Query: 73  TLDEFSFSSFPDL----LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPE-I 127
           ++          +    L L+L  N +  I  P   +  +L  L L  N  S  +    I
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 128 GQLSFLSELSLYSNCLNG---------SIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNL 178
             L+ L    L                S  + L NL+ +     Y +     I  +   L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 179 ISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTL-------------- 223
            ++S+  L    +     F +     +L  ++            +L              
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 224 --GKLKCLSNLNMSMNHLS--GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN 279
               L  L  L++S N LS  G    S     +L+ L L  N +  ++      L  L +
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 400

Query: 280 LDLSINRLNGVIPSSI-GNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV 338
           LD   + L  +   S+  +  NL  L +       +       L  L  L+++ N+    
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 339 IPSSI-GNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397
               I   LRNL  L L + +L    P A  +L  L  L +  N  +      F  LT+L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 398 VRVRMNQNNLSGNIS 412
            ++ ++ N    +  
Sbjct: 521 QKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (302), Expect = 1e-28
 Identities = 63/321 (19%), Positives = 113/321 (35%), Gaps = 23/321 (7%)

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387
           L+LS N L  +   S  +   L++L L R E+      A  +L  L +L+L  N  +   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF-HGQISSDWGRFPQL 446
              F  L++L ++   + NL+   +        TL  L+++HN     ++   +     L
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 447 GTLDFSVNNITGSIPPEIGNSSKLQV----LNLSSNHIGGKIPMELGRLSSLNKLILNKN 502
             LD S N I      ++    ++ +    L+LS N +   I     +   L+KL L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNN 210

Query: 503 QLFGSLPPE-IGTLTELELLDL------SENRLSNAIPGSLGNL--LKVHYLNLSNNEFS 553
               ++    I  L  LE+  L      +E  L      +L  L  L +    L+  ++ 
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 554 HKIPTQFEKLQLQLSELDLSQNFLEGEIP-SQICNMESLVKLNLSYNQLSGFIPNCFEDM 612
                        +S   L    +E     S     + L  +N  + Q           +
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKL 324

Query: 613 HGLSSIDISYNRLQGPVPFSK 633
             L  +  + N+         
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVD 345

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 1/133 (0%)

Query: 63  INLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK 122
           ++   ++L    +   F S  +L++L++ +           + L  L+ L ++ N     
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 123 IPPEI-GQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL 181
             P+I  +L  L+ L L    L    P +  +LS   +L++ +N L      +   L SL
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 182 STLDLSLNQLIGS 194
             + L  N    S
Sbjct: 521 QKIWLHTNPWDCS 533

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  200 bits (510), Expect = 1e-56
 Identities = 106/481 (22%), Positives = 183/481 (38%), Gaps = 37/481 (7%)

Query: 77  FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL 136
           F+ ++  + +   L    +   +    + L ++  L      +       +  L+ L+++
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQI 73

Query: 137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP 196
           +  +N L    P  L NL+K   + + NN ++   P  + NL +L+ L L  NQ+    P
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
             L NLTNL  L L +N++S      L  L  L  L+             + N+  L  L
Sbjct: 130 --LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLERL 182

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP 316
            + SN++S      +  L +L +L  + N+++ + P  +G   NL  L L  NQL     
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--I 236

Query: 317 KEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSL 376
             + +L  L DL+L+ N ++ + P  +  L  L  L L  N++S   P  +  L  L +L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 377 LLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQI 436
            L  N      P    NL NL  + +  NN+S       V +   L  L   +N      
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD-- 345

Query: 437 SSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNK 496
            S       +  L    N I+   P  + N +++  L L+        P+      S+  
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPN 402

Query: 497 LILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKI 556
            + N        P  I         D++ N  S           +   +      FS  +
Sbjct: 403 TVKNVTGAL-IAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTV 460

Query: 557 P 557
            
Sbjct: 461 T 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  197 bits (504), Expect = 7e-56
 Identities = 116/519 (22%), Positives = 195/519 (37%), Gaps = 63/519 (12%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSI 147
             +  +     I    + L +     L    ++  +      L  ++ L           
Sbjct: 6   ATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL--GIKS 60

Query: 148 PQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVT 207
              +  L+  + ++  NN L+   P  + NL  L  + ++ NQ+    P  L NLTNL  
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 208 LHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI 267
           L LFNN ++   P  L  L  L+ L +S N +S    S++  + +L+ L    N+++   
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLK 171

Query: 268 PKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFD 327
           P  + NL +L  LD+S N+++    S +    NL  L   +NQ+S   P  +G L  L +
Sbjct: 172 P--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDE 225

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387
           L L+ N L  +   ++ +L NL  L L  N++S   P  +  L +L  L LG N      
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281

Query: 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447
           P     LT L  + +N+N L                              S       L 
Sbjct: 282 P--LAGLTALTNLELNENQLED---------------------------ISPISNLKNLT 312

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
            L    NNI+   P  + + +KLQ L   +N +       L  L+++N L    NQ+  S
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQI--S 366

Query: 508 LPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQL 567
               +  LT +  L L++   +NA      N+   + +           P          
Sbjct: 367 DLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGG-SY 423

Query: 568 SELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIP 606
           +E D++ N                V +       SG + 
Sbjct: 424 TEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  191 bits (487), Expect = 2e-53
 Identities = 102/479 (21%), Positives = 192/479 (40%), Gaps = 61/479 (12%)

Query: 150 SLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLH 209
           +   L+++    L   +++  +     +L  ++TL      +       +  L NL  ++
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQIN 74

Query: 210 LFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
             NN L+   P  L  L  L ++ M+ N ++   P  + N+ NL  L L++N+++   P 
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP- 129

Query: 270 EIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLE 329
            + NL +L+ L+LS N ++ +  S++    +L  L    NQ++   P  + NL  L  L+
Sbjct: 130 -LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLD 183

Query: 330 LSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPK 389
           +S N ++    S +  L NL  L    N++S   P  +G L  L  L L  N  +     
Sbjct: 184 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--G 237

Query: 390 NFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTL 449
              +LTNL  + +  N +S       +     L+ L L  N       S       L  L
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--ISPLAGLTALTNL 292

Query: 450 DFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLP 509
           + + N +    P  I N   L  L L  N+I    P  +  L+ L +L    N++  S  
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDV 346

Query: 510 PEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSE 569
             +  LT +  L    N++S+  P  L NL ++  L L++  +++        + +  + 
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

Query: 570 LDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGP 628
            +++   +    P+ I +  S  + +                        I++N     
Sbjct: 405 KNVTGALI---APATISDGGSYTEPD------------------------ITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  190 bits (485), Expect = 3e-53
 Identities = 103/453 (22%), Positives = 183/453 (40%), Gaps = 36/453 (7%)

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239
            L +  ++ +  I  + F    L   +   L   +++  +      L  ++ L      +
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSN 299
                  +  + NL  +   +N+L+   P  + NL  L ++ ++ N++  + P  + N  
Sbjct: 59  K--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112

Query: 300 NLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNEL 359
           NL+ L L++NQ++   P  + NL  L  LELS N ++ +  S++  L +L+ L    N++
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQV 167

Query: 360 SGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTY 419
           +   P  + NL  L  L +  N            LTNL  +    N +S       +G  
Sbjct: 168 TDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGIL 220

Query: 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNH 479
             L  L L+ N     I +       L  LD + N I+   P  +   +KL  L L +N 
Sbjct: 221 TNLDELSLNGNQLKD-IGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 480 IGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNL 539
           I    P  L  L++L  L LN+NQL       I  L  L  L L  N +S+  P  + +L
Sbjct: 277 ISNISP--LAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSL 330

Query: 540 LKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYN 599
            K+  L   NN+ S    +    L   ++ L    N +    P  + N+  + +L L+  
Sbjct: 331 TKLQRLFFYNNKVS--DVSSLANLT-NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385

Query: 600 QLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS 632
             +    N   ++   +++      L  P   S
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATIS 418

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  154 bits (392), Expect = 1e-40
 Identities = 91/363 (25%), Positives = 149/363 (41%), Gaps = 31/363 (8%)

Query: 271 IGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLEL 330
              L       L    +   +     + + ++ L      +       +  L  L  +  
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINF 75

Query: 331 SMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKN 390
           S N LT + P  + NL  L  + +  N+++   P  + NL  L  L L  N      P  
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-- 129

Query: 391 FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLD 450
            KNLTNL R+ ++ N +S +IS   +    +L  L   +                L  LD
Sbjct: 130 LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLD 183

Query: 451 FSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPP 510
            S N ++      +   + L+ L  ++N I    P  LG L++L++L LN NQL      
Sbjct: 184 ISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIG 237

Query: 511 EIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSEL 570
            + +LT L  LDL+ N++SN  P  L  L K+  L L  N+ S+  P     L   L+ L
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT-ALTNL 292

Query: 571 DLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630
           +L++N LE   P  I N+++L  L L +N +S   P     +  L  +    N++     
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348

Query: 631 FSK 633
            + 
Sbjct: 349 LAN 351

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (354), Expect = 1e-35
 Identities = 85/356 (23%), Positives = 147/356 (41%), Gaps = 31/356 (8%)

Query: 278 SNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337
           S        +N +               L    ++ ++     +L  +  L+     +  
Sbjct: 5   SATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK- 59

Query: 338 VIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397
                +  L NL  +    N+L+   P  + NL +LV +L+  N      P    NLTNL
Sbjct: 60  -SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 114

Query: 398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNIT 457
             + +  N ++       +     L+ L+LS N       S       L  L F  N +T
Sbjct: 115 TGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVT 168

Query: 458 GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTE 517
              P  + N + L+ L++SSN +       L +L++L  LI   NQ+  S    +G LT 
Sbjct: 169 DLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQI--SDITPLGILTN 222

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFL 577
           L+ L L+ N+L +   G+L +L  +  L+L+NN+ S+  P     L  +L+EL L  N +
Sbjct: 223 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQI 277

Query: 578 EGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK 633
               P  +  + +L  L L+ NQL    P    ++  L+ + + +N +    P S 
Sbjct: 278 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS 329

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (352), Expect = 2e-35
 Identities = 78/330 (23%), Positives = 145/330 (43%), Gaps = 22/330 (6%)

Query: 64  NLTTTSL-NGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK 122
           +L   S  N   D    ++   L  L++ +N++  I    +++L  L+ L  + N++S  
Sbjct: 157 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI 214

Query: 123 IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLS 182
            P  +G L+ L ELSL  N L      +L +L+  + L L NN +S   P  +  L  L+
Sbjct: 215 TP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268

Query: 183 TLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA 242
            L L  NQ+    P  L  LT L  L L  N L    P  +  LK L+ L +  N++S  
Sbjct: 269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324

Query: 243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLS 302
            P  + ++  L+ LF Y+N++S      + NL +++ L    N+++ + P  + N   ++
Sbjct: 325 SP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 303 ILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGS 362
            L L     + +      N+  + +   ++     + P++I +  +     +  N  S  
Sbjct: 379 QLGLNDQAWTNAPVNYKANVS-IPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPS-Y 435

Query: 363 IPQAIGNLVELVSLLLGFNYFRGPIPKNFK 392
             +      + V++  G   F G + +  K
Sbjct: 436 TNEVSYTFSQPVTIGKGTTTFSGTVTQPLK 465

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  199 bits (508), Expect = 5e-54
 Identities = 122/562 (21%), Positives = 194/562 (34%), Gaps = 78/562 (13%)

Query: 79  FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELS 137
                    L L  N +  +       L +LQ L+L +      I  E    L  L  L 
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 138 LYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP--VIGNLISLSTLDLSLNQLIG-S 194
           L S+ +    P +   L     L LY   LS  +       NL +L+ LDLS NQ+    
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 195 VPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKC--LSNLNMSMNHLSGAIPSSIGNVRN 252
           +    G L +L ++   +N +       L  L+   LS  +++ N L   +    G   N
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 253 LRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS 312
                                   L  LD+S N     I               +SN +S
Sbjct: 200 PF------------------RNMVLEILDVSGNGWTVDITG------------NFSNAIS 229

Query: 313 GSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLR--NLRLLYLYRNELSGSIPQAIGNL 370
            S    +     +       +N+     ++   L   ++R L L    +     +    L
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 371 VELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHN 430
            +L  L L +N       + F  L NL  + ++ N L    S  F G  P ++++DL  N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKVAYIDLQKN 348

Query: 431 NFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGR 490
           +        +    +L TLD   N +T      I     +  + LS N            
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNK----------- 392

Query: 491 LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGS-LGNLLKVHYLNLSN 549
           L +L K+ L  N +                  LSENRL N      L  +  +  L L+ 
Sbjct: 393 LVTLPKINLTANLI-----------------HLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 550 NEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQIC-----NMESLVKLNLSYNQLSGF 604
           N FS     Q       L +L L +N L+    +++C      +  L  L L++N L+  
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 605 IPNCFEDMHGLSSIDISYNRLQ 626
            P  F  +  L  + ++ NRL 
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  161 bits (408), Expect = 4e-41
 Identities = 84/382 (21%), Positives = 141/382 (36%), Gaps = 22/382 (5%)

Query: 254 RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG 313
           R  F     L+  +P+    L +   L LS N +  V  SS      L +L L S     
Sbjct: 7   RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 314 SIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSI--PQAIGNL 370
           +I KE   NL  L  L+L  + +  + P +   L +L  L LY   LS ++       NL
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 371 VELVSLLLGFNYFRG-PIPKNFKNLTNLVRVRMNQNNLSGNISEAFVG-TYPTLSFLDLS 428
             L  L L  N  R   +  +F  L +L  +  + N +              TLSF  L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 429 HNNFHGQISSDWGRFPQ-LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME 487
            N+ + ++S DWG+       +   + +++G       N   + +    SN I       
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFS 235

Query: 488 LGRLSSLNKLILNKNQLFGSLPPEI---GTLTELELLDLSENRLSNAIPGSLGNLLKVHY 544
           L     +       + +              + +  LDLS   + +        L  +  
Sbjct: 236 LILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 545 LNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGF 604
           LNL+ N+ +      F  L   L  L+LS N L     S    +  +  ++L  N ++  
Sbjct: 295 LNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 605 IPNCFEDMHGLSSIDISYNRLQ 626
               F+ +  L ++D+  N L 
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  142 bits (360), Expect = 3e-35
 Identities = 90/421 (21%), Positives = 150/421 (35%), Gaps = 42/421 (9%)

Query: 75  DEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFK------LQYLDLSANKLSGKIPPEIG 128
            E        L F +L  N L+  +     +         L+ LD+S N  +  I     
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT---- 221

Query: 129 QLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNL--ISLSTLDL 186
                     +SN ++ S   SL             +++          L   S+  LDL
Sbjct: 222 --------GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 187 SLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSS 246
           S   +          L +L  L+L  N ++         L  L  LN+S N L     S+
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 247 IGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYL 306
              +  +  + L  N ++    +    L  L  LDL  N L     ++I    ++  ++L
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFL 388

Query: 307 YSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV-IPSSIGNLRNLRLLYLYRNELSG-SIP 364
             N+L  ++PK          + LS N L  + I   +  + +L++L L +N  S  S  
Sbjct: 389 SGNKLV-TLPKINLTAN---LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444

Query: 365 QAIGNLVELVSLLLGFNYFRGPI-----PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTY 419
           Q       L  L LG N  +           F+ L++L  + +N N L+      F    
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL- 503

Query: 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNH 479
             L  L L+ N     + S       L  LD S N +  +  P++     L VL+++ N 
Sbjct: 504 TALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLL-APNPDV--FVSLSVLDITHNK 558

Query: 480 I 480
            
Sbjct: 559 F 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 4e-11
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 519 ELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLE 578
            +       L+  +P  L        L LS N       + F  L+ QL  L+L   +  
Sbjct: 7   RIAFYRFCNLT-QVPQVLNTT---ERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYTP 61

Query: 579 GEIPSQIC-NMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRD 637
             I  +   N+ +L  L+L  +++    P+ F+ +  L  + + +  L   V     FR+
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 638 AP 639
             
Sbjct: 122 LK 123

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  192 bits (489), Expect = 4e-53
 Identities = 109/532 (20%), Positives = 182/532 (34%), Gaps = 45/532 (8%)

Query: 99  IPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS 158
           IP  ++    ++ LDLS NK++     ++   + L  L L S+ +N     +  +L    
Sbjct: 20  IPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77

Query: 159 LLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHL-FNNSLS 216
            L L +N LS       G L SL  L+L  N      V     NLTNL TL +    + S
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 217 GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRS 276
                    L  L+ L +    L      S+ ++R++  L L+ +E +  +      L S
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 277 LSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLT 336
           +  L+L    L     S +      S +   + + S    +    L  L    L ++ + 
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV- 256

Query: 337 GVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
                   +     L     +E            V +  L +   Y    +   +  L  
Sbjct: 257 -----EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
           + R+ +  + +             +L FLDLS N                          
Sbjct: 312 VKRITVENSKVFLVPCSFSQHL-KSLEFLDLSENLM---------------------VEE 349

Query: 457 TGSIPPEIGNSSKLQVLNLSSNHIG--GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGT 514
                   G    LQ L LS NH+    K    L  L +L  L +++N     +P     
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQW 408

Query: 515 LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQ 574
             ++  L+LS   +          L     L++SNN           +LQ    EL +S+
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIPQTL---EVLDVSNNNLDS-FSLFLPRLQ----ELYISR 460

Query: 575 NFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           N L+  +P        L+ + +S NQL       F+ +  L  I +  N   
Sbjct: 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  177 bits (451), Expect = 7e-48
 Identities = 92/510 (18%), Positives = 181/510 (35%), Gaps = 49/510 (9%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPE-IGQLS 131
            +      +  +L  L L ++ +  I       L  L++LDLS N LS  +     G LS
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLS 98

Query: 132 FLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL 191
            L  L+L  N    ++                       +  +  NL +L TL +   + 
Sbjct: 99  SLKYLNLMGNPYQ-TLG----------------------VTSLFPNLTNLQTLRIGNVET 135

Query: 192 IGSVP-FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNV 250
              +       LT+L  L +   SL  +   +L  ++ + +L + ++  +  +      +
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 251 RNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQ 310
            ++R L L    L+      +      S +     R + +   S      L    L  ++
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 311 LSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNL 370
           +         +       + + +    V          +R L++ +  L   +      L
Sbjct: 256 VE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 371 VELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLS--GNISEAFVGTYPTLSFLDLS 428
            ++  + +  +          ++L +L  + +++N +      + A  G +P+L  L LS
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 429 HNNFHGQISSDWGRF---PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP 485
            N+    +            L +LD S N     +P       K++ LNLSS  I   + 
Sbjct: 370 QNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVK 426

Query: 486 MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYL 545
             +    +L  L ++ N L  S       L  L+ L +S N+L      SL  +L    +
Sbjct: 427 TCI--PQTLEVLDVSNNNL-DSFSLF---LPRLQELYISRNKLKTLPDASLFPVLL--VM 478

Query: 546 NLSNNEFSHKIPTQFEKLQLQLSELDLSQN 575
            +S N+        F++L   L ++ L  N
Sbjct: 479 KISRNQLKSVPDGIFDRLT-SLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  176 bits (448), Expect = 1e-47
 Identities = 91/464 (19%), Positives = 169/464 (36%), Gaps = 26/464 (5%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG-KIPPEIGQLS 131
           T++  +F S   L  L+L +N L  +       L  L+YL+L  N      +      L+
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 132 FLSELSLYSNCLNGSIP-QSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQ 190
            L  L + +      I       L+  + L +   SL  Y    + ++  +  L L L++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 191 LIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNV 250
               +  F   L+++  L L + +L+ F  S L   +  S +       S     S   +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 251 RNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQ 310
             L    L  +E+         +       D + +  + V       +  +  L++    
Sbjct: 244 LKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 311 LSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSI---PQAI 367
           L   +      L+ +  + +  + +  V  S   +L++L  L L  N +           
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 368 GNLVELVSLLLGFNYFR--GPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFL 425
           G    L +L+L  N+ R      +    L NL  + +++N     + ++       + FL
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP-EKMRFL 415

Query: 426 DLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP 485
           +LS                 L  LD S NN+  S    +     LQ L +S N +   +P
Sbjct: 416 NLSSTGIR---VVKTCIPQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKL-KTLP 467

Query: 486 MELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRL 528
            +      L  + +++NQL  S+P  I   LT L+ + L  N  
Sbjct: 468 -DASLFPVLLVMKISRNQL-KSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (361), Expect = 4e-36
 Identities = 79/394 (20%), Positives = 140/394 (35%), Gaps = 30/394 (7%)

Query: 258 LYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPK 317
             S   + SIP  +    ++ +LDLS N++  +    +    NL +L L S++++     
Sbjct: 12  GRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 318 EIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG-SIPQAIGNLVELVSL 376
              +L  L  L+LS N+L+ +  S  G L +L+ L L  N      +     NL  L +L
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 377 LLGFNYFRGPIPKN-FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQ 435
            +G       I +  F  LT+L  + +   +L    S++       +  L L  +     
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI-RDIHHLTLHLSESAFL 187

Query: 436 ISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGG----------KIP 485
           +         +  L+    N+       +        +   +               K+ 
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 486 MELGRLSSLNKLILNKNQLFGSLPPEIGTLTE--------LELLDLSENRLSNAIPGSLG 537
             +  LS +       N L    P E   ++E        +  L + +  L   +     
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 538 NLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQ---ICNMESLVKL 594
            L KV  + + N++      +  + L+  L  LDLS+N +  E            SL  L
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 595 NLSYNQLS--GFIPNCFEDMHGLSSIDISYNRLQ 626
            LS N L            +  L+S+DIS N   
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (317), Expect = 2e-30
 Identities = 73/444 (16%), Positives = 136/444 (30%), Gaps = 64/444 (14%)

Query: 63  INLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK 122
           + +        +    F+    L  L +    L       +  +  + +L L  ++ +  
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 123 IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLS 182
           +      LS +  L L    L       L      S +                      
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR-------------GSV 234

Query: 183 TLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA 242
             D S N+L+  + + L  L+ +       N L  F PS    +  L  +          
Sbjct: 235 LTDESFNELLKLLRYIL-ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV------- 286

Query: 243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLS 302
                     +R L +    L   +      L  +  + +  +++  V  S   +  +L 
Sbjct: 287 ---------TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 303 ILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS-- 360
            L L  N +                             +  G   +L+ L L +N L   
Sbjct: 338 FLDLSENLMV---------------------EEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

Query: 361 GSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYP 420
               + +  L  L SL +  N F  P+P + +    +  + ++   +             
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI----RVVKTCIPQ 431

Query: 421 TLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHI 480
           TL  LD+S+N     + S     P+L  L  S N +  ++P        L V+ +S N +
Sbjct: 432 TLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQL 485

Query: 481 GGKIPMELGRLSSLNKLILNKNQL 504
                    RL+SL K+ L+ N  
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHTNPW 509

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  188 bits (479), Expect = 2e-52
 Identities = 100/517 (19%), Positives = 181/517 (35%), Gaps = 79/517 (15%)

Query: 99  IPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS 158
           I P+      LQ     ++ L+ ++P E   +   +E     +    + P   G   + +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 159 L-------------LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNL 205
           +             L L N  LS  +P +  +L    +L  S N L   +P    +L +L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSL 116

Query: 206 VTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG 265
           +  +    +LS   P        L  L +S N L   +P  + N   L+ + + +N L  
Sbjct: 117 LVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK- 166

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCL 325
            +P    +L  +       N+L  +    + N   L+ +Y  +N L   +P    +L+ +
Sbjct: 167 KLPDLPPSLEFI---AAGNNQLEEL--PELQNLPFLTAIYADNNSLK-KLPDLPLSLESI 220

Query: 326 FDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRG 385
                  N L       + NL  L  +Y   N L  ++P    +L  L            
Sbjct: 221 ---VAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD--- 271

Query: 386 PIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQ 445
            +P+  ++LT L       + LS           P L +L+ S N    +I S     P 
Sbjct: 272 -LPELPQSLTFLDVSENIFSGLSELP--------PNLYYLNASSN----EIRSLCDLPPS 318

Query: 446 LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF 505
           L  L+ S N +   +P        L+ L  S NH+  ++P     L  L+   +  N L 
Sbjct: 319 LEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNLKQLH---VEYNPL- 369

Query: 506 GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQL 565
              P    ++ +L +     N     +P    NL     L++  N      P   E ++ 
Sbjct: 370 REFPDIPESVEDLRM-----NSHLAEVPELPQNL---KQLHVETNPLRE-FPDIPESVE- 419

Query: 566 QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLS 602
              +L ++   +           + L      ++   
Sbjct: 420 ---DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  170 bits (433), Expect = 4e-46
 Identities = 102/500 (20%), Positives = 181/500 (36%), Gaps = 84/500 (16%)

Query: 148 PQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVT 207
           P+++ N   Q  L  ++++L+  +P    N+ S +    + ++   + P   G    +  
Sbjct: 5   PRNVSNTFLQEPL-RHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 208 LHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI 267
             L +                   L ++   LS ++P       +L SL    N L+  +
Sbjct: 63  SRLRDCLDRQ-----------AHELELNNLGLS-SLPELPP---HLESLVASCNSLT-EL 106

Query: 268 PKEIGNLRSLSNLDLSINRLNGVIPS---------------SIGNSNNLSILYLYSNQLS 312
           P+   +L+SL   + ++  L+ + P                 + NS+ L I+ + +N L 
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166

Query: 313 GSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVE 372
             +P    +L+    +    N L  +    + NL  L  +Y   N L   +P    +L  
Sbjct: 167 -KLPDLPPSLE---FIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK-KLPDLPLSLES 219

Query: 373 LVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF 432
           +V    G N          +NL  L  +  + N L   + +      P+L  L++  N  
Sbjct: 220 IV---AGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLP----PSLEALNVRDNYL 269

Query: 433 HGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLS 492
                        L  LD S N  +  +     N   L  LN SSN I   +      L 
Sbjct: 270 TDLPEL----PQSLTFLDVSENIFS-GLSELPPN---LYYLNASSNEI-RSLCDLPPSLE 320

Query: 493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552
            LN   ++ N+L   LP     L     L  S N L+  +P    NL     L++  N  
Sbjct: 321 ELN---VSNNKL-IELPALPPRLER---LIASFNHLAE-VPELPQNL---KQLHVEYNPL 369

Query: 553 SHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDM 612
             + P   E ++      DL  N    E+P    N   L +L++  N L    P   +  
Sbjct: 370 R-EFPDIPESVE------DLRMNSHLAEVPELPQN---LKQLHVETNPLR-EFP---DIP 415

Query: 613 HGLSSIDISYNRLQGPVPFS 632
             +  + ++  R+  P  F+
Sbjct: 416 ESVEDLRMNSERVVDPYEFA 435

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  145 bits (368), Expect = 2e-37
 Identities = 83/422 (19%), Positives = 149/422 (35%), Gaps = 66/422 (15%)

Query: 218 FIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSL 277
           FI         L       ++L+  +P    NV++    +   +E   + P   G  R +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 278 SNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337
           +   L                     L L +  LS S+P+   +L+    L  S N+LT 
Sbjct: 61  AVSRLRDCLD-----------RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT- 104

Query: 338 VIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397
            +P    +L++L +       LS   P        L  L +  N     +P   +N + L
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEK-LP-ELQNSSFL 155

Query: 398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNIT 457
             + ++ N+L            P+L F+   +N    +   +    P L  +    N++ 
Sbjct: 156 KIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK 208

Query: 458 GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTE 517
             +P    +   L+ +   +N +  +   EL  L  L  +  + N L  +LP    +L  
Sbjct: 209 -KLPDLPLS---LESIVAGNNIL--EELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEA 261

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQL------------ 565
           L + D     L    P    +L  +       +  S ++P     L              
Sbjct: 262 LNVRDNYLTDL----PELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLCDLP 316

Query: 566 -QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNR 624
             L EL++S N L  E+P+    +E   +L  S+N L+       E    L  + + YN 
Sbjct: 317 PSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVP----ELPQNLKQLHVEYNP 368

Query: 625 LQ 626
           L+
Sbjct: 369 LR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.0 bits (229), Expect = 1e-19
 Identities = 52/295 (17%), Positives = 88/295 (29%), Gaps = 62/295 (21%)

Query: 339 IPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLV 398
           I     +   L+    + + L+  +P    N+         ++ +    P        + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 399 RVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITG 458
             R+                      L+L++                             
Sbjct: 62  VSRLRDCLDRQ------------AHELELNNLGLS------------------------- 84

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTEL 518
           S+P    +   L+ L  S N +  ++P     L SL     N   L   LPP       L
Sbjct: 85  SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL-SDLPPL------L 133

Query: 519 ELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLE 578
           E L +S N+L   +P  L N   +  +++ NN    K+P     L+     +    N LE
Sbjct: 134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLE----FIAAGNNQLE 186

Query: 579 GEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK 633
            E+P  + N+  L  +    N L             L SI    N L+       
Sbjct: 187 -ELPE-LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNILEELPELQN 235

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.7 bits (223), Expect = 5e-19
 Identities = 51/268 (19%), Positives = 87/268 (32%), Gaps = 53/268 (19%)

Query: 78  SFSSFPDLLF----LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFL 133
           S    PDL      +   NN L     P++  L  L  +    N L   +P     L   
Sbjct: 206 SLKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE-- 260

Query: 134 SELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIP-------------PVIGNLIS 180
             L++  N L   +P+   +L+   +     + LS   P              +     S
Sbjct: 261 -ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 318

Query: 181 LSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240
           L  L++S N+LI  +P     L  L       N L+  +P     LK    L++  N L 
Sbjct: 319 LEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQNLK---QLHVEYNPLR 370

Query: 241 GAIPSSIGNVR----------------NLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSI 284
              P    +V                 NL+ L + +N L    P    ++    +L ++ 
Sbjct: 371 -EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVE---DLRMNS 425

Query: 285 NRLNGVIPSSIGNSNNLSILYLYSNQLS 312
            R+      +   ++ L       +   
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  181 bits (461), Expect = 4e-51
 Identities = 99/376 (26%), Positives = 163/376 (43%), Gaps = 31/376 (8%)

Query: 178 LISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN 237
             +L+TL   +NQ+     F   +L   +   L   S++     T  +L+ ++ L ++  
Sbjct: 2   AATLATLPAPINQI-----FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGE 54

Query: 238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGN 297
            ++      I  + NL  L L  N+++   P  + NL  L+NL +  N++     S++ N
Sbjct: 55  KVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQN 108

Query: 298 SNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357
             NL  LYL  + +S   P  + NL  ++ L L  N+      S + N+  L  L +  +
Sbjct: 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTES 165

Query: 358 ELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVG 417
           ++    P  I NL +L SL L +N      P    +LT+L       N ++       V 
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VA 218

Query: 418 TYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSS 477
               L+ L + +N       S      QL  L+   N I+      + + +KL++LN+ S
Sbjct: 219 NMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 478 NHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLG 537
           N I       L  LS LN L LN NQL       IG LT L  L LS+N +++  P  L 
Sbjct: 275 NQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330

Query: 538 NLLKVHYLNLSNNEFS 553
           +L K+   + +N    
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  178 bits (455), Expect = 3e-50
 Identities = 79/357 (22%), Positives = 157/357 (43%), Gaps = 26/357 (7%)

Query: 75  DEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLS 134
             F  +   + +   L    +  ++     +L  +  L ++  K++      I  L+ L 
Sbjct: 14  QIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLE 69

Query: 135 ELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS 194
            L+L  N +    P  L NL K + L +  N ++      + NL +L  L L+ + +   
Sbjct: 70  YLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDI 125

Query: 195 VPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLR 254
            P  L NLT + +L+L  N       S L  +  L+ L ++ + +    P  I N+ +L 
Sbjct: 126 SP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180

Query: 255 SLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGS 314
           SL L  N++    P  + +L SL      +N++  + P  + N   L+ L + +N+++  
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236

Query: 315 IPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELV 374
            P  + NL  L  LE+  N ++ +  +++ +L  L++L +  N++S      + NL +L 
Sbjct: 237 SP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 375 SLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNN 431
           SL L  N       +    LTNL  + ++QN+++       + +   +   D ++  
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  176 bits (449), Expect = 2e-49
 Identities = 74/331 (22%), Positives = 148/331 (44%), Gaps = 23/331 (6%)

Query: 78  SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELS 137
           +      +  L +   ++  I    I  L  L+YL+L+ N+++   P  +  L  L+ L 
Sbjct: 39  TQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLY 94

Query: 138 LYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPF 197
           + +N +  +   +L NL+    L L  +++S   P  + NL  + +L+L  N  + S   
Sbjct: 95  IGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLS 149

Query: 198 FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLF 257
            L N+T L  L +  + +    P  +  L  L +L+++ N +    P  + ++ +L    
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT 205

Query: 258 LYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPK 317
            Y N+++   P  + N+  L++L +  N++  + P  + N + L+ L + +NQ+S     
Sbjct: 206 AYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--IN 259

Query: 318 EIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLL 377
            + +L  L  L +  N ++ +  S + NL  L  L+L  N+L     + IG L  L +L 
Sbjct: 260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 378 LGFNYFRGPIPKNFKNLTNLVRVRMNQNNLS 408
           L  N+     P    +L+ +         + 
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  173 bits (442), Expect = 2e-48
 Identities = 87/370 (23%), Positives = 156/370 (42%), Gaps = 28/370 (7%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSI 147
           L      +  I P   + L +     L    ++        +L  +++L +    +  SI
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SI 59

Query: 148 PQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVT 207
              +  L+    L+L  N ++   P  + NL+ L+ L +  N++  +    L NLTNL  
Sbjct: 60  Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 208 LHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI 267
           L+L  +++S   P  L  L  + +LN+  NH      S + N+  L  L +  +++    
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 268 PKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFD 327
           P  I NL  L +L L+ N++  + P  + +  +L     Y NQ++   P  + N+  L  
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387
           L++  N +T + P  + NL  L  L +  N++S     A+ +L +L  L +G N      
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-- 279

Query: 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447
                NL+ L  + +N N L     E   G    L+ L LS N+             ++ 
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITD--IRPLASLSKMD 336

Query: 448 TLDFSVNNIT 457
           + DF+   I 
Sbjct: 337 SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  171 bits (435), Expect = 2e-47
 Identities = 75/374 (20%), Positives = 151/374 (40%), Gaps = 29/374 (7%)

Query: 253 LRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS 312
             +L      ++   P    +L       L    +  V+        +++ L +   +++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 313 GSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVE 372
               + I  L  L  L L+ N +T + P  + NL  L  LY+  N+++     A+ NL  
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 373 LVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF 432
           L  L L  +      P    NLT +  + +  N+   ++S   +     L++L ++ +  
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167

Query: 433 HGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLS 492
                +       L +L  + N I    P  + + + L       N I    P  +  ++
Sbjct: 168 KD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552
            LN L +  N++  +    +  L++L  L++  N++S+    ++ +L K+  LN+ +N+ 
Sbjct: 222 RLNSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

Query: 553 SHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDM 612
           S    +    L  QL+ L L+ N L  E    I  + +L  L LS N ++   P     +
Sbjct: 278 SD--ISVLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332

Query: 613 HGLSSIDISYNRLQ 626
             + S D +   ++
Sbjct: 333 SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  160 bits (406), Expect = 1e-43
 Identities = 78/357 (21%), Positives = 146/357 (40%), Gaps = 27/357 (7%)

Query: 277 LSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLT 336
            + L      +N + P    +        L    ++  +      L+ +  L ++   + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 337 GVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
            +    I  L NL  L L  N+++   P  + NLV+L +L +G N          +NLTN
Sbjct: 58  SI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
           L  + +N++N+S       +     +  L+L  N+    +S        L  L  + + +
Sbjct: 112 LRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV 167

Query: 457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLT 516
               P  I N + L  L+L+ N I    P  L  L+SL+      NQ+  +    +  +T
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI--TDITPVANMT 221

Query: 517 ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNF 576
            L  L +  N++++  P  L NL ++ +L +  N+ S  I    + L  +L  L++  N 
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINA-VKDLT-KLKMLNVGSNQ 276

Query: 577 LEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK 633
           +     S + N+  L  L L+ NQL          +  L+++ +S N +    P + 
Sbjct: 277 ISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS 331

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  175 bits (445), Expect = 4e-49
 Identities = 57/308 (18%), Positives = 103/308 (33%), Gaps = 21/308 (6%)

Query: 85  LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLN 144
              L    +         +SQ  +    D +    + +        +     +     L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALK 69

Query: 145 GSIPQSLGNLSKQSL--LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNL 202
            +    L + ++     L L +  L    P     L  L  + +    L+  +P  +   
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 203 TNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNV---------RNL 253
             L TL L  N L   +P+++  L  L  L++        +P  + +           NL
Sbjct: 127 AGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 254 RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG 313
           +SL L    +  S+P  I NL++L +L +  + L+  +  +I +   L  L L       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR 243

Query: 314 SIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVEL 373
           + P   G    L  L L   +    +P  I  L  L  L L        +P  I  L   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 374 VSLLLGFN 381
             +L+  +
Sbjct: 304 CIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  166 bits (423), Expect = 4e-46
 Identities = 56/311 (18%), Positives = 108/311 (34%), Gaps = 21/311 (6%)

Query: 109 LQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS 168
            + L    +         + Q                       N +   + +    +L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALK 69

Query: 169 GYIPPVIGNLIS--LSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKL 226
                ++ +        L+L    L    P     L++L  + +    L   +P T+ + 
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQF 126

Query: 227 KCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGN---------LRSL 277
             L  L ++ N L  A+P+SI ++  LR L + +      +P+ + +         L +L
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 278 SNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337
            +L L    +   +P+SI N  NL  L + ++ LS ++   I +L  L +L+L       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 338 VIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397
             P   G    L+ L L       ++P  I  L +L  L L        +P     L   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 398 VRVRMNQNNLS 408
             + +  +  +
Sbjct: 304 CIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  163 bits (416), Expect = 4e-45
 Identities = 59/361 (16%), Positives = 116/361 (32%), Gaps = 52/361 (14%)

Query: 192 IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVR 251
           +GS      + +    L+   ++        L + +   N + +  H          N  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 252 NLRSLFLYSNELSGSIPKEIGNLRS--LSNLDLSINRLNGVIPSSIGNSNNLSILYLYSN 309
           N +        L  +    + +        L+L    L    P      ++L  + + + 
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 310 QLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGN 369
            L   +P  +     L  L L+ N L   +P+SI +L  LR L +        +P+ + +
Sbjct: 115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 370 LVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSH 429
                                 + L NL  +R+    +                      
Sbjct: 173 T---------------DASGEHQGLVNLQSLRLEWTGIR--------------------- 196

Query: 430 NNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELG 489
                 + +       L +L    + ++ ++ P I +  KL+ L+L         P   G
Sbjct: 197 -----SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 490 RLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSN 549
             + L +LIL       +LP +I  LT+LE LDL      + +P  +  L     + +  
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 550 N 550
           +
Sbjct: 311 H 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  163 bits (414), Expect = 7e-45
 Identities = 56/288 (19%), Positives = 105/288 (36%), Gaps = 26/288 (9%)

Query: 78  SFSSFPDL--LFLNLFNNELFGIIPPQISQL--FKLQYLDLSANKLSGKIPPEIGQLSFL 133
           S     +     +              +          L+L +  L  + P +  +LS L
Sbjct: 48  SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHL 106

Query: 134 SELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIG 193
             +++ +  L   +P ++   +    L+L  N L   +P  I +L  L  L +     + 
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELT 164

Query: 194 SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL 253
            +P  L +                        L  L +L +    +  ++P+SI N++NL
Sbjct: 165 ELPEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 254 RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYS-NQLS 312
           +SL + ++ LS ++   I +L  L  LDL         P   G    L  L L   + L 
Sbjct: 209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 313 GSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS 360
            ++P +I  L  L  L+L        +PS I  L    ++ +  +  +
Sbjct: 268 -TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  160 bits (406), Expect = 8e-44
 Identities = 55/340 (16%), Positives = 105/340 (30%), Gaps = 29/340 (8%)

Query: 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNN 300
           G+      +     +L+   +         +   +   N D +             NSNN
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 301 LSILYLYSNQLSGSIPKEIGNLK--CLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNE 358
             I       L  +    + +        LEL    L    P     L +L+ + +    
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 359 LSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGT 418
           L   +P  +     L +L L  N  R  +P +  +L  L  + +        + E    T
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 419 YPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN 478
             +     L                  L +L      I  S+P  I N   L+ L + ++
Sbjct: 174 DASGEHQGLV----------------NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216

Query: 479 HIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGN 538
            +   +   +  L  L +L L       + PP  G    L+ L L +      +P  +  
Sbjct: 217 PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 539 LLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLE 578
           L ++  L+L       ++P+   +L      + +  +   
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLP-ANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  158 bits (402), Expect = 4e-43
 Identities = 58/363 (15%), Positives = 104/363 (28%), Gaps = 56/363 (15%)

Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNM 234
             +      L    +  +      L                      +  +    +N  +
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR-------NRWHSAWRQANSNNPQI 60

Query: 235 SMNHLSG--AIPSSIGN--VRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
                    A    + +       +L L S  L    P +   L  L ++ +    L   
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLR 350
           +P ++     L  L L  N L  ++P  I +L  L +L +        +P  + +     
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---- 173

Query: 351 LLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGN 410
                              LV L SL L +   R  +P +  NL NL             
Sbjct: 174 -----------DASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKS----------- 210

Query: 411 ISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKL 470
                         L + ++     +       P+L  LD        + PP  G  + L
Sbjct: 211 --------------LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 471 QVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSN 530
           + L L        +P+++ RL+ L KL L        LP  I  L    ++ +  +  + 
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 531 AIP 533
              
Sbjct: 316 LDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (301), Expect = 1e-29
 Identities = 44/295 (14%), Positives = 79/295 (26%), Gaps = 44/295 (14%)

Query: 342 SIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVR 401
              +      LY   +         +       +      +          N  N     
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIET 62

Query: 402 MNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIP 461
                L          T P    L+L                                 P
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-------------------------QFP 97

Query: 462 PEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELL 521
            +    S LQ + + +  +  ++P  + + + L  L L +N L  +LP  I +L  L  L
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLREL 155

Query: 522 DLSENRLSNAIPGSLGN---------LLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDL 572
            +        +P  L +         L+ +  L L        +P     LQ  L  L +
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKI 213

Query: 573 SQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDIS-YNRLQ 626
             + L   +   I ++  L +L+L         P  F     L  + +   + L 
Sbjct: 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 22/142 (15%)

Query: 505 FGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKI-------- 556
            GS        +  E L    +         L    + +  + +    + +         
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 557 -----------PTQFEKLQL-QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGF 604
                          E         L+L    L  + P Q   +  L  + +    L   
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME- 118

Query: 605 IPNCFEDMHGLSSIDISYNRLQ 626
           +P+  +   GL ++ ++ N L+
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 78  SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELS 137
            F     L  L L +      +P  I +L +L+ LDL       ++P  I QL     + 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 138 LYSNCLNGSIPQSL 151
           +    L   + Q  
Sbjct: 308 V-PPHLQAQLDQHR 320

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  168 bits (427), Expect = 4e-45
 Identities = 67/438 (15%), Positives = 136/438 (31%), Gaps = 22/438 (5%)

Query: 171 IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
           I  +  N        ++ + L  ++     +  N+  L L  N LS    + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
            LN+S N L       + ++  LR+L L +N +      E+    S+  L  + N ++ V
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV-IPSSIGNLRNL 349
              S         +YL +N+++     + G    +  L+L +N +  V       +   L
Sbjct: 115 ---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 350 RLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSG 409
             L L  N +   +   +    +L +L L  N     +   F++   +  + +  N L  
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227

Query: 410 NISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSK 469
            I +A   +   L   DL  N FH     D+           +   +           + 
Sbjct: 228 LIEKALRFS-QNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 470 LQVLNLSSNHIGGKIPMELGRLSSL----NKLILNKNQLFGSLPPEIGTLTELELLDLSE 525
             + +  +            RL +L    + L+  +      L  E         +D  +
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 526 NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL-QLQLSELDLSQNFLEGEIPSQ 584
            +    I            L         ++        +L  +               +
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 585 ICNMESLVKLNLSYNQLS 602
              ++ L  +   Y ++ 
Sbjct: 406 QSPLQLLRAIVKRYEEMY 423

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  167 bits (424), Expect = 8e-45
 Identities = 72/457 (15%), Positives = 148/457 (32%), Gaps = 22/457 (4%)

Query: 127 IGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDL 186
               +      +  + L  ++     +      L L  N LS      +     L  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 187 SLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSS 246
           S N L  ++     +L+ L TL L NN +       L     +  L+ + N++S  +  S
Sbjct: 66  SSNVLYETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS 117

Query: 247 IGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV-IPSSIGNSNNLSILY 305
            G  +  ++++L +N+++     + G    +  LDL +N ++ V       +S+ L  L 
Sbjct: 118 RG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 306 LYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQ 365
           L  N +   +  ++     L  L+LS N L   +     +   +  + L  N+L   I +
Sbjct: 176 LQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 366 AIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFL 425
           A+     L    L  N F     ++F   +   RV+         ++          +  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 426 DLSHNNFHGQISSDWGRFPQLGTLDFSV----NNITGSIPPEIGNSSKLQVLNLSSNHIG 481
                      +    R   L   + ++     + T  +  E  N ++ + ++       
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 482 GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLK 541
             I     R  +   L   K  L   +        EL+            +  +      
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSP 408

Query: 542 VHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLE 578
           +  L      +      Q       + + D+ Q+   
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  161 bits (408), Expect = 1e-42
 Identities = 71/457 (15%), Positives = 141/457 (30%), Gaps = 21/457 (4%)

Query: 79  FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSL 138
             +        + ++ L   +       + ++ LDLS N LS     ++   + L  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 139 YSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFF 198
            SN L       L +LS    L L NN +       +    S+ TL  + N  I  V   
Sbjct: 66  SSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-ISRVSC- 116

Query: 199 LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG-AIPSSIGNVRNLRSLF 257
                    ++L NN ++       G    +  L++ +N +          +   L  L 
Sbjct: 117 -SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 258 LYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPK 317
           L  N +   +  ++     L  LDLS N+L   +     ++  ++ + L +N+L   I K
Sbjct: 176 LQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 318 EIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLL 377
            +   + L   +L  N             +N R+  + +  +     Q            
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 378 LGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNIS---EAFVGTYPTLSFLDLSHNNFHG 434
            G              L  L R      +  G+ +   E           +D     +  
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 435 QISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSL 494
            I     R     TL+     +   +       ++L      +     ++       S L
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPL 409

Query: 495 NKLILNKNQL-FGSLPPEIGTLTELELLDLSENRLSN 530
             L     +     +  +      +   D+ +++ + 
Sbjct: 410 QLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  157 bits (398), Expect = 2e-41
 Identities = 60/387 (15%), Positives = 129/387 (33%), Gaps = 16/387 (4%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301
           AI     N    +   +  + L  ++     +  ++  LDLS N L+ +  + +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 302 SILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG 361
            +L L SN L  ++   + +L  L  L+L+ N +       +    ++  L+   N +S 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPT 421
            +           ++ L  N        +    + +  + +  N +          +  T
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG 481
           L  L+L +N  +  +      F +L TLD S N +   + PE  +++ +  ++L +N + 
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL- 226

Query: 482 GKIPMELGRLSSLNKLILNKNQL-FGSLPPEIGTLTELELLDLSENR-LSNAIPGSLGNL 539
             I   L    +L    L  N    G+L         ++ +     + L+          
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 540 LKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYN 599
              HY      +       +   L+ +   L   Q      +  +  N     +++    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 600 QLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           Q    I           +++     L 
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  156 bits (395), Expect = 5e-41
 Identities = 62/419 (14%), Positives = 121/419 (28%), Gaps = 23/419 (5%)

Query: 219 IPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLS 278
           I              ++ + L  A+ S   +  N++ L L  N LS     ++     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 279 NLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV 338
            L+LS N L       + + + L  L L +N +      E+     +  L  + NN++ V
Sbjct: 62  LLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114

Query: 339 IPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRG-PIPKNFKNLTNL 397
              S    +  + +YL  N+++       G    +  L L  N        +   +   L
Sbjct: 115 ---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNIT 457
             + +  N +     +        L  LDLS N     +  ++     +  +    N + 
Sbjct: 172 EHLNLQYNFIYDVKGQVVF---AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 458 GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTE 517
             I   +  S  L+  +L  N        +     +     + K  +           T 
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL---QLQLSELDLSQ 574
             L         +        L+ +     +          + E     Q +  E+D  +
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 575 NFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSI---DISYNRLQGPVP 630
                 I       ++ + L      L   + N       L       +    LQ    
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  143 bits (361), Expect = 2e-36
 Identities = 63/429 (14%), Positives = 129/429 (30%), Gaps = 24/429 (5%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSF 132
            +     + F  L  LNL +N L+      +  L  L+ LDL+ N +      E+     
Sbjct: 48  QISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPS 100

Query: 133 LSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLI 192
           +  L   +N ++               + L NN ++       G    +  LDL LN++ 
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 193 G-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVR 251
             +      +   L  L+L  N +       +     L  L++S N L+  +     +  
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 252 NLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL 311
            +  + L +N+L   I K +   ++L + DL  N  +         S N  +  +    +
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTV 272

Query: 312 SGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGS----IPQAI 367
                +                    +       L  L+          GS    +    
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

Query: 368 GNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDL 427
            N      +      +R  I +        + +   +  L   +S      +  L     
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR-RAHAELDGTLQ 391

Query: 428 SHNNFHGQISSDWGRFPQLGTLDFSVNNIT-GSIPPEIGNSSKLQVLNLSSNHIGGKIPM 486
                  ++         L  L   V       +  +   ++ ++  ++  +    ++  
Sbjct: 392 QAVG-QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE-TQLAE 449

Query: 487 ELGRLSSLN 495
           E  RL  LN
Sbjct: 450 ENARLKKLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (265), Expect = 3e-24
 Identities = 51/350 (14%), Positives = 100/350 (28%), Gaps = 10/350 (2%)

Query: 62  GINLTTTSLNGT-LDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLS 120
           G ++ T       +   S S       + L NN++  +         ++QYLDL  N++ 
Sbjct: 98  GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 121 G-KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLI 179
                        L  L+L  N +   +   +   +K   L L +N L+ ++ P   +  
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS-GFIPSTLGKLKCLSNLNM-SMN 237
            ++ + L  N+L+  +   L    NL    L  N    G +     K + +  +   ++ 
Sbjct: 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSI-NRLNGVIPSSIG 296
            L+G                    +L       +  L+   +  LS        +     
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 297 NSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYR 356
           N      +     Q    I +     +    LE     L   + +       L       
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 357 NELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNN 406
                 +  A      L  L      +     +      N +R      +
Sbjct: 394 VGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.0 bits (200), Expect = 4e-16
 Identities = 31/283 (10%), Positives = 70/283 (24%), Gaps = 10/283 (3%)

Query: 83  PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNC 142
             L  L+L +N+L   + P+      + ++ L  NKL   I   +     L    L  N 
Sbjct: 191 AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 143 LNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNL 202
            +    +       Q + ++   ++              +               F   L
Sbjct: 249 FHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 203 TNLVTLHLFNNSLSG----FIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFL 258
             L        S  G     +            ++         I       +   +L  
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 259 YSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKE 318
               L   +         L            +  ++   S    +  +        + ++
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427

Query: 319 IGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG 361
                 + D ++  +  T +   +  N R  +L       L+ 
Sbjct: 428 SVQNNAIRDWDMYQHKETQL---AEENARLKKLNGEADLALAS 467

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 12/68 (17%), Positives = 27/68 (39%)

Query: 566 QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRL 625
           +     ++ + L+  + S   +  ++ +L+LS N LS            L  +++S N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 626 QGPVPFSK 633
              +    
Sbjct: 71  YETLDLES 78

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  156 bits (396), Expect = 8e-42
 Identities = 74/389 (19%), Positives = 134/389 (34%), Gaps = 23/389 (5%)

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKC 324
            I   +       ++ + +   +          NN  I+   ++ +   +P  +  + + 
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 325 LFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFR 384
           +  L L+   +  +   +      ++ LY+  N +    P    N+  L  L+L  N   
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 385 GPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP 444
                 F N   L  + M+ NNL     + F  T  +L  L LS N        D    P
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLT---HVDLSLIP 186

Query: 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQL 504
            L   + S N ++      +     ++ L+ S N I   +   +     L  L L  N L
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNL 238

Query: 505 FGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ 564
             +    +     L  +DLS N L   +      + ++  L +SNN     +    + + 
Sbjct: 239 --TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 295

Query: 565 LQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNR 624
             L  LDLS N L   +       + L  L L +N +     +     H L ++ +S+N 
Sbjct: 296 -TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHND 350

Query: 625 LQGPVPFSKAFRDAPAEALQGNRGLCGDD 653
                     FR+    A+      C  D
Sbjct: 351 WD-CNSLRALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  148 bits (376), Expect = 4e-39
 Identities = 68/385 (17%), Positives = 133/385 (34%), Gaps = 28/385 (7%)

Query: 194 SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL 253
            +   L        +H+   +   +       L     +    + +     + + + R +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 254 RSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS 312
             L L   ++   I         ++  L +  N +  + P    N   L++L L  N LS
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 313 GSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLV 371
            S+P+ I  N   L  L +S NNL  +   +     +L+ L L  N L+  +   +  + 
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIP 186

Query: 372 ELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNN 431
            L    + +N               +  +  + N+++       V     L+ L L HNN
Sbjct: 187 SLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHNN 237

Query: 432 FHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMELGR 490
                ++    +P L  +D S N +   I         +L+ L +S+N +   + +    
Sbjct: 238 LTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQP 293

Query: 491 LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
           + +L  L L+ N L   +         LE L L  N +      +   L     L LS+N
Sbjct: 294 IPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL---KNLTLSHN 349

Query: 551 EFSHKIPTQFEKLQLQLSELDLSQN 575
           ++          L   ++   +   
Sbjct: 350 DWDC---NSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  147 bits (374), Expect = 7e-39
 Identities = 83/417 (19%), Positives = 147/417 (35%), Gaps = 47/417 (11%)

Query: 146 SIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNL 205
            I  +L        + +   +   Y       L +   +    + +       L +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 206 VTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG 265
             L+L +  +             +  L M  N +    P    NV  L  L L  N+LS 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 266 SIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKC 324
           S+P+ I  N   L+ L +S N L  +   +   + +L  L L SN+L+  +   +  +  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPS 187

Query: 325 LFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFR 384
           LF   +S N L+     ++     +  L    N ++  +                     
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR-------------------- 221

Query: 385 GPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP 444
                    LT L   ++  NNL+     A++  YP L  +DLS+N     +   + +  
Sbjct: 222 ---GPVNVELTIL---KLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQL 504
           +L  L  S N +  ++         L+VL+LS NH+   +     +   L  L L+ N +
Sbjct: 273 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSI 330

Query: 505 FGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFE 561
             +L     T   L+ L LS N        +L     V    + + +   KI  Q E
Sbjct: 331 -VTLKL--STHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  141 bits (358), Expect = 9e-37
 Identities = 73/383 (19%), Positives = 141/383 (36%), Gaps = 25/383 (6%)

Query: 86  LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLN 144
           + +++   +++     +   L   + +    + +  K+P  +      +  L+L    + 
Sbjct: 26  VHIDMQTQDVYF--GFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE 82

Query: 145 GSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTN 204
                +         L +  N++    P V  N+  L+ L L  N L         N   
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142

Query: 205 LVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS 264
           L TL + NN+L      T      L NL +S N L+  +   +  + +L    +  N LS
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 199

Query: 265 GSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKC 324
                 +    ++  LD S N +N V       +  L+IL L  N L+      + N   
Sbjct: 200 -----TLAIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLT-DTA-WLLNYPG 249

Query: 325 LFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFR 384
           L +++LS N L  ++      ++ L  LY+  N L  ++      +  L  L L  N+  
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

Query: 385 GPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP 444
             + +N      L  + ++ N++   +      T+ TL  L LSHN++          F 
Sbjct: 309 H-VERNQPQFDRLENLYLDHNSIV-TLKL---STHHTLKNLTLSHNDWDCNSLRAL--FR 361

Query: 445 QLGTLDFSVNNITGSIPPEIGNS 467
            +        +    I  ++ + 
Sbjct: 362 NVARPAVDDADQHCKIDYQLEHG 384

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (348), Expect = 2e-35
 Identities = 68/366 (18%), Positives = 126/366 (34%), Gaps = 22/366 (6%)

Query: 67  TTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPE 126
                     F   +  +   +   N+ +  +    +    +++ L+L+  ++  +I   
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTY 87

Query: 127 I-GQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD 185
                  + +L +  N +    P    N+   ++L L  N LS     +  N   L+TL 
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147

Query: 186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPS 245
           +S N L           T+L  L L +N L+    S +  L    + N+S N L     S
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLL-----S 199

Query: 246 SIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILY 305
           ++     +  L    N ++  +   +     L+ L L  N L     + + N   L  + 
Sbjct: 200 TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVD 254

Query: 306 LYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIP 364
           L  N+L   I       ++ L  L +S N L   +      +  L++L L  N L   + 
Sbjct: 255 LSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVE 311

Query: 365 QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSF 424
           +       L +L L  N            L NL    ++ N+   N   A        + 
Sbjct: 312 RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL---TLSHNDWDCNSLRALFRNVARPAV 368

Query: 425 LDLSHN 430
            D   +
Sbjct: 369 DDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  134 bits (339), Expect = 3e-34
 Identities = 76/350 (21%), Positives = 131/350 (37%), Gaps = 26/350 (7%)

Query: 64  NLTTTSLNG----TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL 119
           N    +        L      SF  +  LNL + ++  I     +    +Q L +  N +
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 120 SGKIPPEIGQ-LSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNL 178
              +PP + Q +  L+ L L  N L+        N  K + LS+ NN+L           
Sbjct: 106 R-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164

Query: 179 ISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH 238
            SL  L LS N+ +  V      + +L   ++  N L     STL     +  L+ S N 
Sbjct: 165 TSLQNLQLSSNR-LTHVDL--SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS 216

Query: 239 LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNS 298
           ++  +   +     L  L L  N L+      + N   L  +DLS N L  ++       
Sbjct: 217 IN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 299 NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNE 358
             L  LY+ +N+L  ++      +  L  L+LS N+L   +  +      L  LYL  N 
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 359 LSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLS 408
           +  ++   +     L +L L  N +     +      N+ R  ++  +  
Sbjct: 330 IV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 505 FGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ 564
           +  +   +        + +               L     +   N+          +  +
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 565 LQLSELDLSQNFLEGEIPSQI-CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
            Q+  L+L+   +E EI +       ++ KL + +N +    P+ F+++  L+ + +  N
Sbjct: 70  -QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 624 RLQ 626
            L 
Sbjct: 128 DLS 130

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  159 bits (404), Expect = 2e-41
 Identities = 78/371 (21%), Positives = 146/371 (39%), Gaps = 50/371 (13%)

Query: 108 KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL 167
               L++  + L+  +P  +     ++ L +  N L  S+P     L     L +  N L
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPELRT---LEVSGNQL 93

Query: 168 SGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLK 227
           +  +P +   L+ LS     L  L           + L  L +F N L+  +P     L+
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLPPGLQ 144

Query: 228 CLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRL 287
               L++S N L+ ++P+       L  L+ Y+N+L+ S+P     L+    L +S N+L
Sbjct: 145 ---ELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQL 193

Query: 288 NGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLR 347
              +P+       L  L+ Y+N+L+ S+P     LK   +L +S N LT  +P     L+
Sbjct: 194 A-SLPTLPS---ELYKLWAYNNRLT-SLPALPSGLK---ELIVSGNRLTS-LPVLPSELK 244

Query: 348 NLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNL 407
               L +  N L+ S+P        L+SL +  N     +P++  +L++   V +  N L
Sbjct: 245 E---LMVSGNRLT-SLPMLPSG---LLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPL 296

Query: 408 SGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS 467
           S    +A       ++              +      +   L  +  +    +P   G  
Sbjct: 297 SERTLQA----LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL--VPAREGEP 350

Query: 468 SKLQVLNLSSN 478
           +     ++   
Sbjct: 351 APADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  146 bits (369), Expect = 8e-37
 Identities = 76/393 (19%), Positives = 137/393 (34%), Gaps = 72/393 (18%)

Query: 202 LTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSN 261
                 L++  + L+  +P  L     ++ L +  N+L+ ++P+       LR+L +  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPP---ELRTLEVSGN 91

Query: 262 ELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN 321
           +L+ S+P     L  LS     +  L  +          L  L+++ NQL+ S+P     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPPG 142

Query: 322 LKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFN 381
           L+    L +S N L   +P+    L     L+ Y N+L+ S+P     L E   L +  N
Sbjct: 143 LQE---LSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLPSGLQE---LSVSDN 191

Query: 382 YFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWG 441
                +P     L                           L   +    +     S    
Sbjct: 192 QLAS-LPTLPSELYK-------------------------LWAYNNRLTSLPALPSG--- 222

Query: 442 RFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNK 501
               L  L  S N +T S+P        L+ L +S N +   +PM    L SL+   + +
Sbjct: 223 ----LKELIVSGNRLT-SLPVLPSE---LKELMVSGNRL-TSLPMLPSGLLSLS---VYR 270

Query: 502 NQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFE 561
           NQL   LP  +  L+    ++L  N LS     +L  +      +     F     +   
Sbjct: 271 NQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA-- 327

Query: 562 KLQLQLSELDLSQNFLEGEIPSQICNMESLVKL 594
             +   +    + ++L      +    +     
Sbjct: 328 -PRETRALHLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  142 bits (360), Expect = 9e-36
 Identities = 73/352 (20%), Positives = 121/352 (34%), Gaps = 73/352 (20%)

Query: 274 LRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMN 333
               + L++  + L   +P  +    +++ L +  N L+ S+P     L+    LE+S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 334 NLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKN 393
            LT  +P     L  L +       L             L  L +  N     +P     
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTS-LPVLPPG 142

Query: 394 LTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSV 453
           L  L                             +S N    Q++S      +L  L    
Sbjct: 143 LQEL----------------------------SVSDN----QLASLPALPSELCKLWAYN 170

Query: 454 NNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIG 513
           N +T S+P        LQ L++S N +   +P     L  L       N+L  SLP    
Sbjct: 171 NQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLW---AYNNRL-TSLPALPS 221

Query: 514 TLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLS 573
            L EL    +S NRL++ +P     L     L +S N  +  +P     L      L + 
Sbjct: 222 GLKEL---IVSGNRLTS-LPVLPSEL---KELMVSGNRLTS-LPMLPSGLL----SLSVY 269

Query: 574 QNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRL 625
           +N L   +P  + ++ S   +NL  N LS       + +  ++S       +
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERT---LQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  134 bits (339), Expect = 4e-33
 Identities = 65/302 (21%), Positives = 116/302 (38%), Gaps = 40/302 (13%)

Query: 80  SSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLY 139
           +  P+L  L +  N+L   +P     L +L         L           S L +L ++
Sbjct: 78  ALPPELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIF 129

Query: 140 SNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFL 199
            N L  S+P     L +   LS+ +N L+  +P +   L  L   +  L  L        
Sbjct: 130 GNQLT-SLPVLPPGLQE---LSVSDNQLAS-LPALPSELCKLWAYNNQLTSL-------P 177

Query: 200 GNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLY 259
              + L  L + +N L+  +P+   +L  L   N   N L+ ++P+       L+ L + 
Sbjct: 178 MLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SLPALPS---GLKELIVS 229

Query: 260 SNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI 319
            N L+ S+P     L+    L +S NRL   +P        L  L +Y NQL+  +P+ +
Sbjct: 230 GNRLT-SLPVLPSELK---ELMVSGNRLTS-LPMLPS---GLLSLSVYRNQLT-RLPESL 280

Query: 320 GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLY---LYRNELSGSIPQAIGNLVELVSL 376
            +L     + L  N L+     ++  + +        +  +    S P+    L    + 
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

Query: 377 LL 378
            L
Sbjct: 341 WL 342

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 50/231 (21%), Positives = 84/231 (36%), Gaps = 36/231 (15%)

Query: 73  TLDEFSFSSFPDLLF----LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIG 128
           ++ +   +S P L      L  +NN+L   +P   S L   Q L +S N+L+  +P    
Sbjct: 147 SVSDNQLASLPALPSELCKLWAYNNQL-TSLPMLPSGL---QELSVSDNQLA-SLPTLPS 201

Query: 129 QLSFLS-----------------ELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYI 171
           +L  L                  EL +  N L  S+P     L +   L +  N L+  +
Sbjct: 202 ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SL 256

Query: 172 PPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN 231
           P +   L+SL    +  NQL   +P  L +L++  T++L  N LS      L ++     
Sbjct: 257 PMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

Query: 232 LNMSMNHLSGAIPSSIGNVRNL-RSLFLYSNELSGSIPKEIGNLRSLSNLD 281
            +  +     A  S+    R L  +   +        P            D
Sbjct: 313 YSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQED 363

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  144 bits (366), Expect = 2e-38
 Identities = 57/286 (19%), Positives = 106/286 (37%), Gaps = 16/286 (5%)

Query: 123 IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLS 182
           I       +      +  + L  ++     +      L L  N LS      +     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 183 TLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA 242
            L+LS N L  ++     +L+ L TL L NN +       L     +  L+ + N++S  
Sbjct: 62  LLNLSSNVLYETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-R 113

Query: 243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV-IPSSIGNSNNL 301
           +  S G  +  ++++L +N+++     + G    +  LDL +N ++ V       +S+ L
Sbjct: 114 VSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 302 SILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG 361
             L L  N +   +  ++     L  L+LS N L   +     +   +  + L  N+L  
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 362 SIPQAIGNLVELVSLLLGFNYFR-GPIPKNFKNLTNLVRVRMNQNN 406
            I +A+     L    L  N F  G +   F     +  V      
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  143 bits (364), Expect = 3e-38
 Identities = 58/331 (17%), Positives = 106/331 (32%), Gaps = 40/331 (12%)

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCL 325
           +I +   N        ++ + L   + S   ++ N+  L L  N LS     ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 326 FDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRG 385
             L LS N L       + +L  LR L L  N +       +     + +L    N    
Sbjct: 61  ELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 386 PIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQ 445
                 +   N                            + L++N        D G   +
Sbjct: 114 VSCSRGQGKKN----------------------------IYLANNKITMLRDLDEGCRSR 145

Query: 446 LGTLDFSVNNITG-SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQL 504
           +  LD  +N I   +      +S  L+ LNL  N I   +  ++   + L  L L+ N+L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQVV-FAKLKTLDLSSNKL 203

Query: 505 FGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ 564
              + PE  +   +  + L  N+L   I  +L     + + +L  N F       F    
Sbjct: 204 -AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 565 LQLSELDLSQNFLEGEIPSQICNMESLVKLN 595
            ++  +             + C + +L    
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  143 bits (363), Expect = 4e-38
 Identities = 54/333 (16%), Positives = 112/333 (33%), Gaps = 16/333 (4%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301
           AI     N    +   +  + L  ++     +  ++  LDLS N L+ +  + +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 302 SILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG 361
            +L L SN L      ++ +L  L  L+L+ N +       +    ++  L+   N +S 
Sbjct: 61  ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPT 421
            +           ++ L  N        +    + +  + +  N +          +  T
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG 481
           L  L+L +N  +  +      F +L TLD S N +   + PE  +++ +  ++L +N + 
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL- 226

Query: 482 GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLK 541
             I   L    +L    L  N                 +  +++  +   + G       
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQTVKK-LTGQNEEECT 284

Query: 542 VHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQ 574
           V  L          +P  F    + L       
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  143 bits (362), Expect = 6e-38
 Identities = 62/360 (17%), Positives = 118/360 (32%), Gaps = 46/360 (12%)

Query: 171 IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
           I  +  N        ++ + L  ++     +  N+  L L  N LS    + L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
            LN+S N L       + ++  LR+L L +N +      E+    S+  L  + N ++  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV-IPSSIGNLRNL 349
           +  S G       +YL +N+++     + G    +  L+L +N +  V       +   L
Sbjct: 114 VSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 350 RLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSG 409
             L L  N +   +   +    +L +L L  N     +   F++   +  + +  N L  
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227

Query: 410 NISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSK 469
            I +A   +   L   DL  N FH                                 S  
Sbjct: 228 LIEKALRFS-QNLEHFDLRGNGFH-------------------------CGTLRDFFSKN 261

Query: 470 LQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLS 529
            +V  ++   +  K+  +     ++  L          LP          L+ L  +   
Sbjct: 262 QRVQTVAKQTV-KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  141 bits (358), Expect = 2e-37
 Identities = 55/336 (16%), Positives = 115/336 (34%), Gaps = 22/336 (6%)

Query: 146 SIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNL 205
           +I +   N ++  +  + ++SL   +  +  +  ++  LDLS N L       L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 206 VTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG 265
             L+L +N L       L  L  L  L+++ N++       +    ++ +L   +N +S 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG-SIPKEIGNLKC 324
            +       +   N+ L+ N++  +     G  + +  L L  N++   +  +   +   
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 325 LFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFR 384
           L  L L  N +   +   +     L+ L L  N+L+  +     +   +  + L  N   
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 385 GPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP 444
             I K  +   NL    +  N         F      +  +           + +    P
Sbjct: 228 L-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHI 480
            LG              P        +++ L  +H 
Sbjct: 287 TLG----HYGAYCCEDLPA---PFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (351), Expect = 2e-36
 Identities = 54/283 (19%), Positives = 102/283 (36%), Gaps = 16/283 (5%)

Query: 79  FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSL 138
             +        + ++ L   +       + ++ LDLS N LS     ++   + L  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 139 YSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFF 198
            SN L       L +LS    L L NN +       +    S+ TL  + N  I  V   
Sbjct: 66  SSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-ISRVSC- 116

Query: 199 LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG-AIPSSIGNVRNLRSLF 257
                    ++L NN ++       G    +  L++ +N +          +   L  L 
Sbjct: 117 -SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 258 LYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPK 317
           L  N +   +  ++     L  LDLS N+L   +     ++  ++ + L +N+L   I K
Sbjct: 176 LQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 318 EIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS 360
            +   + L   +L  N             +N R+  + +  + 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (336), Expect = 2e-34
 Identities = 56/301 (18%), Positives = 100/301 (33%), Gaps = 28/301 (9%)

Query: 64  NLTTTSLNG----TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL 119
                 +              S  ++  L+L  N L  I    ++   KL+ L+LS+N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 120 SGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLI 179
                 ++  LS L  L L +N +     Q L        L   NN++S  +        
Sbjct: 71  YE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC--SRGQ 120

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNH 238
               + L+ N++        G  + +  L L  N +              L +LN+  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 239 LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNS 298
           +   +   +     L++L L SN+L+  +  E  +   ++ + L  N+L  +I  ++  S
Sbjct: 181 IY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 299 NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNE 358
            NL    L  N               L D       +  V   ++  L            
Sbjct: 237 QNLEHFDLRGNGFH---------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 359 L 359
           L
Sbjct: 288 L 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (316), Expect = 8e-32
 Identities = 48/266 (18%), Positives = 99/266 (37%), Gaps = 17/266 (6%)

Query: 362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPT 421
           +I +   N        +  +  +  +    ++  N+  + ++ N LS   +      +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTK 59

Query: 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG 481
           L  L+LS N  +   + D      L TLD + N +      E+     ++ L+ ++N+I 
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 482 GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSN-AIPGSLGNLL 540
            ++    G+      + L  N++      + G  + ++ LDL  N +          +  
Sbjct: 113 -RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 541 KVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQ 600
            + +LNL  N     +  Q    +L+   LDLS N L   +  +  +   +  ++L  N+
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVVFAKLK--TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 601 LSGFIPNCFEDMHGLSSIDISYNRLQ 626
           L   I         L   D+  N   
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 566 QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRL 625
           +     ++ + L+  + S   +  ++ +L+LS N LS            L  +++S N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 626 QGPVPFS 632
              +   
Sbjct: 71  YETLDLE 77

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  145 bits (368), Expect = 2e-37
 Identities = 70/305 (22%), Positives = 118/305 (38%), Gaps = 14/305 (4%)

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387
           L+L  N +  +      +  +L  L L  N +S   P A  NL  L +L L  N  +   
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96

Query: 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS-DWGRF--- 443
              F  L+NL ++ +++N +   +   F      L  L++  N     +       F   
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDN----DLVYISHRAFSGL 151

Query: 444 PQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKN 502
             L  L     N+T SIP E   +   L VL L   +I         RL  L  L ++  
Sbjct: 152 NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 503 QLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK 562
               ++ P       L  L ++   L+     ++ +L+ + +LNLS N  S    +   +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 563 LQLQLSELDLSQNFLEGEIPSQI-CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDIS 621
           L  +L E+ L    L   +       +  L  LN+S NQL+    + F  +  L ++ + 
Sbjct: 271 LL-RLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 622 YNRLQ 626
            N L 
Sbjct: 329 SNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  141 bits (358), Expect = 4e-36
 Identities = 71/328 (21%), Positives = 129/328 (39%), Gaps = 31/328 (9%)

Query: 229 LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288
              L++  N +         +  +L  L L  N +S   P    NL +L  L L  NRL 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLR 347
            +        +NL+ L +  N++   +   +  +L  L  LE+  N+L  +   +   L 
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 348 NLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNL 407
           +L  L L +  L+ SIP                        +   +L  L+ +R+   N+
Sbjct: 153 SLEQLTLEKCNLT-SIP-----------------------TEALSHLHGLIVLRLRHLNI 188

Query: 408 SGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE-IGN 466
           +     +F      L  L++SH  +   ++ +      L +L  +  N+T ++P   + +
Sbjct: 189 NAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRH 246

Query: 467 SSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSE 525
              L+ LNLS N I       L  L  L ++ L   QL   + P     L  L +L++S 
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSG 305

Query: 526 NRLSNAIPGSLGNLLKVHYLNLSNNEFS 553
           N+L+        ++  +  L L +N  +
Sbjct: 306 NQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  139 bits (352), Expect = 3e-35
 Identities = 63/306 (20%), Positives = 120/306 (39%), Gaps = 6/306 (1%)

Query: 82  FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYS 140
             +   L+L  N +  +   + +    L+ L+L+ N +S  + P     L  L  L L S
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 141 NCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVI-GNLISLSTLDLSLNQLIGSVPFFL 199
           N L          LS  + L +  N +   +   +  +L +L +L++  N L+       
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 200 GNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLY 259
             L +L  L L   +L+      L  L  L  L +   +++     S   +  L+ L + 
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 260 SNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI 319
                 ++        +L++L ++   L  V   ++ +   L  L L  N +S +I   +
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSM 267

Query: 320 -GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLL 378
              L  L +++L    L  V P +   L  LR+L +  N+L+        ++  L +L+L
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

Query: 379 GFNYFR 384
             N   
Sbjct: 328 DSNPLA 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  145 bits (368), Expect = 8e-37
 Identities = 75/383 (19%), Positives = 144/383 (37%), Gaps = 24/383 (6%)

Query: 171 IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
           I   +        + + +        F    L N   +   N+++     + L   + + 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNG 289
            LN++   +      +      ++ L++  N +   +P  +  N+  L+ L L  N L+ 
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 290 VIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRN 348
           +      N+  L+ L + +N L   I  +       L +L+LS N LT V    +  + +
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS 193

Query: 349 LRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLS 408
           L    +  N LS      +   + +  L    N            LT L   ++  NNL+
Sbjct: 194 LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLT 245

Query: 409 GNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSS 468
                A++  YP L  +DLS+N     +   + +  +L  L  S N +  ++        
Sbjct: 246 ---DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301

Query: 469 KLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRL 528
            L+VL+LS NH+   +     +   L  L L+ N +  +L     T   L+ L LS N  
Sbjct: 302 TLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSI-VTLKL--STHHTLKNLTLSHNDW 357

Query: 529 S-NAIPGSLGNLLKVHYLNLSNN 550
             N++     N+ +    +   +
Sbjct: 358 DCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  137 bits (346), Expect = 5e-34
 Identities = 93/505 (18%), Positives = 173/505 (34%), Gaps = 34/505 (6%)

Query: 108 KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL 167
           + +Y           I   +       ++ +     +         L+ Q +++  N+++
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 168 SGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLK 227
                 ++ +   +  L+L+  Q+     +       +  L++  N++    P     + 
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 228 CLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINR 286
            L+ L +  N LS        N   L +L + +N L   I  +      SL NL LS NR
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 182

Query: 287 LNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNL 346
           L  V    +    +L    +  N LS      +     + +L+ S N++  V        
Sbjct: 183 LTHV---DLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVV---RGPVN 231

Query: 347 RNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNN 406
             L +L L  N L+      + N   LV + L +N     +   F  +  L R+ ++ N 
Sbjct: 232 VELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 407 LSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGN 466
           L   ++       PTL  LDLSHN+    +  +  +F +L  L    N+I  ++      
Sbjct: 290 LV-ALNLYGQPI-PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--ST 343

Query: 467 SSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGT--------LTEL 518
              L+ L LS N         L R  +   +             E G           + 
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDR 403

Query: 519 ELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLE 578
            L  ++   +   +  + G       +N   +  SH I  Q         +L+   N L 
Sbjct: 404 LLQYIALTSVVEKVQRAQGRCSATDTINSVQS-LSHYITQQGGVPLQGNEQLEAEVNELR 462

Query: 579 GEIPS----QICNMESLVKLNLSYN 599
            E+      QI   + L  L+   +
Sbjct: 463 AEVQQLTNEQIQQEQLLQGLHAEID 487

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  132 bits (333), Expect = 2e-32
 Identities = 67/362 (18%), Positives = 125/362 (34%), Gaps = 43/362 (11%)

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKC 324
            I   +       ++ + +   +          NN  I+   ++ +   +P  +  + + 
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 325 LFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFR 384
           +  L L+   +  +   +      ++ LY+  N +    P    N+  L  L+L  N   
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 385 GPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP 444
                 F N   L  + M+ NNL     + F  T  +L  L LS N        D    P
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLT---HVDLSLIP 192

Query: 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQL 504
            L   + S N ++      +     ++ L+ S N I                        
Sbjct: 193 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN----------------------- 224

Query: 505 FGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ 564
              +        EL +L L  N L++     L N   +  ++LS NE    +   F K+Q
Sbjct: 225 --VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 565 LQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNR 624
            +L  L +S N L   +      + +L  L+LS+N L   +         L ++ + +N 
Sbjct: 279 -RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 625 LQ 626
           + 
Sbjct: 336 IV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (330), Expect = 5e-32
 Identities = 97/554 (17%), Positives = 186/554 (33%), Gaps = 48/554 (8%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQ-LS 131
            L      SF  +  LNL + ++  I     +    +Q L +  N +   +PP + Q + 
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVP 123

Query: 132 FLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL 191
            L+ L L  N L+        N  K + LS+ NN+L            SL  L LS N+ 
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR- 182

Query: 192 IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVR 251
           +  V      + +L   ++  N L     STL     +  L+ S N ++  +   +    
Sbjct: 183 LTHVDL--SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NV 232

Query: 252 NLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL 311
            L  L L  N L+      + N   L  +DLS N L  ++         L  LY+ +N+L
Sbjct: 233 ELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 312 SGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLV 371
             ++      +  L  L+LS N+L   +  +      L  LYL  N +  ++   +    
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHH 345

Query: 372 ELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGT---------YPTL 422
            L +L L  N +     +      N+ R  ++  +    I                Y   
Sbjct: 346 TLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDR 403

Query: 423 SFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGG 482
               ++  +   ++    GR     T++   +                + L    N +  
Sbjct: 404 LLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRA 463

Query: 483 KIP---------------MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENR 527
           ++                +     ++L +  L K+ L  S        T L+     + R
Sbjct: 464 EVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLR 523

Query: 528 LSNAIPGSLGNLLK-VHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQIC 586
            + A         K    L   N     ++  +  K      E  L +  ++ ++ ++  
Sbjct: 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK-QLEAKKN 582

Query: 587 NMESLVKLNLSYNQ 600
                 +++  ++ 
Sbjct: 583 RNPDTRRVSHHHHH 596

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  143 bits (362), Expect = 2e-36
 Identities = 110/533 (20%), Positives = 187/533 (35%), Gaps = 71/533 (13%)

Query: 99  IPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS 158
           +P  +SQ  K   L++S N +S     +I  LS L  L +  N +   +           
Sbjct: 15  VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLD---------- 61

Query: 159 LLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF 218
                          V      L  LDLS N+L   +        NL  L L  N+    
Sbjct: 62  -------------ISVFKFNQELEYLDLSHNKL-VKISC--HPTVNLKHLDLSFNAFDAL 105

Query: 219 -IPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSL 277
            I    G +  L  L +S  HL  +    I ++   + L +           +   L+  
Sbjct: 106 PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE--DPEGLQDF 163

Query: 278 SNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337
           +   L I          I + +  ++  L           E+ N+KC+ +       L+ 
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANL-----------ELSNIKCVLEDNKCSYFLS- 211

Query: 338 VIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397
            I + +     L  L L   E + +    I  LV   ++             +  N+   
Sbjct: 212 -ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY----------FSISNVKLQ 260

Query: 398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNIT 457
            ++     + SG        +   LS   +  + F    S  +  F  +   +F+V+   
Sbjct: 261 GQLDFRDFDYSGT-------SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 458 GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIG---T 514
                     S    L+ S+N +   +    G L+ L  LIL  NQL   L         
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQ 372

Query: 515 LTELELLDLSENRLSNAIP-GSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLS 573
           +  L+ LD+S+N +S     G       +  LN+S+N  +  I   F  L  ++  LDL 
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLH 429

Query: 574 QNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
            N ++  IP Q+  +E+L +LN++ NQL       F+ +  L  I +  N   
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  133 bits (335), Expect = 6e-33
 Identities = 88/474 (18%), Positives = 163/474 (34%), Gaps = 45/474 (9%)

Query: 157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS 216
           + L+    N L  ++P  +      + L++S N +       + +L+ L  L + +N + 
Sbjct: 2   EFLVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 217 GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL-SGSIPKEIGNLR 275
               S     + L  L++S N L      S     NL+ L L  N   +  I KE GN+ 
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 276 SLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNL 335
            L  L LS   L       I + N   +L +           +   L+      L +   
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFP 173

Query: 336 TGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395
           T      I ++    +  L  + +                L      +   I    +   
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCV-------------LEDNKCSYFLSILAKLQTNP 220

Query: 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
            L  + +N    + N     +      +    S +N   Q   D+  F   GT       
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT------- 273

Query: 456 ITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTL 515
                     +   L +  + S+  G          S++N      +            +
Sbjct: 274 ----------SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323

Query: 516 TELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSH--KIPTQFEKLQLQLSELDLS 573
           +    LD S N L++ +  + G+L ++  L L  N+     KI     +++  L +LD+S
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDIS 382

Query: 574 QNFLEGEIPSQIC-NMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           QN +  +     C   +SL+ LN+S N L+  I  C      +  +D+  N+++
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  131 bits (330), Expect = 2e-32
 Identities = 86/491 (17%), Positives = 161/491 (32%), Gaps = 56/491 (11%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSF 132
            L      S   L  L + +N +  +         +L+YLDLS NKL  KI         
Sbjct: 35  ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVN 91

Query: 133 LSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLI 192
           L  L L  N  + ++P                      I    GN+  L  L LS   L 
Sbjct: 92  LKHLDLSFNAFD-ALP----------------------ICKEFGNMSQLKFLGLSTTHLE 128

Query: 193 GSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRN 252
            S    + +L     L +   +           L+  +  ++ +   +      I +V  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 253 LRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS 312
                L  + +                L+ +       I + +  +  LS L L + + +
Sbjct: 187 KTVANLELSNIKC-------------VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 313 GSIPKEIGNL---KCLFDLELSMNNLTGVIPSSIG-----NLRNLRLLYLYRNELSGSIP 364
            +    I  L     ++   +S   L G +          +L+ L +  +  +       
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 365 QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSF 424
                   +       +  R         ++  + +  + N L+  + E   G    L  
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC-GHLTELET 352

Query: 425 LDLSHNNFH--GQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS-SKLQVLNLSSNHIG 481
           L L  N      +I+    +   L  LD S N+++        +    L  LN+SSN + 
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 482 GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLK 541
             I   L     +  L L+ N++  S+P ++  L  L+ L+++ N+L +   G    L  
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469

Query: 542 VHYLNLSNNEF 552
           +  + L  N +
Sbjct: 470 LQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (275), Expect = 3e-25
 Identities = 78/405 (19%), Positives = 130/405 (32%), Gaps = 24/405 (5%)

Query: 232 LNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVI 291
           ++ S N L   +P  +   +    L +  N +S     +I +L  L  L +S NR+  + 
Sbjct: 5   VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 292 PSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV-IPSSIGNLRNLR 350
            S    +  L  L L  N+L   I         L  L+LS N    + I    GN+  L+
Sbjct: 62  ISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 351 LLYLYRNELSGSIPQAIGNLVEL-VSLLLGFNYFRGPIPKNFKNLTNLV-RVRMNQNNLS 408
            L L    L  S    I +L    V L+LG  Y     P+  ++       +    N   
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 409 GNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIP-PEIGNS 467
             I +  V T   L   ++       + S       +L T     N    +I        
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 468 SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENR 527
             LQ++  ++               S++ + L     F        +L  L +  +  + 
Sbjct: 239 RILQLVWHTTVWY-----------FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 528 LSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICN 587
                         ++  N + +  +  +             LD S N L   +     +
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 588 MESLVKLNLSYNQLS--GFIPNCFEDMHGLSSIDISYNRLQGPVP 630
           +  L  L L  NQL     I      M  L  +DIS N +     
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (251), Expect = 2e-22
 Identities = 62/340 (18%), Positives = 114/340 (33%), Gaps = 26/340 (7%)

Query: 19  WKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFS 78
              SL I   +      +  V+         S I C  ++      L+  +   T  + S
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 79  FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSL 138
             +  ++         +  ++       F +  + L               L  LS   +
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283

Query: 139 YSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFF 198
            S+             S  ++ +   +            +     LD S N L  +V   
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343

Query: 199 LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFL 258
            G+LT L TL L  N L   +         +                      +L+ L +
Sbjct: 344 CGHLTELETLILQMNQLKE-LSKIAEMTTQMK---------------------SLQQLDI 381

Query: 259 YSNELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPK 317
             N +S    K      +SL +L++S N L   I   +     + +L L+SN++  SIPK
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPK 438

Query: 318 EIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357
           ++  L+ L +L ++ N L  V       L +L+ ++L+ N
Sbjct: 439 QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.0 bits (244), Expect = 2e-21
 Identities = 50/384 (13%), Positives = 125/384 (32%), Gaps = 20/384 (5%)

Query: 255 SLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGS 314
            +    N L   +PK++   +  + L++S N ++ +  S I + + L IL +  N++   
Sbjct: 4   LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 315 IPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQA--IGNLVE 372
                   + L  L+LS N L  +   S     NL+ L L  N    ++P     GN+ +
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQ 116

Query: 373 LVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF 432
           L  L L   +       +   + +L   ++          +         +   L     
Sbjct: 117 LKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 433 HGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLS 492
             +              +  ++NI   +     +     +  L +N     + +     +
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552
             + + + +     ++         +  + L           S  +L  +    + ++ F
Sbjct: 234 WNSFIRILQLVWHTTV-----WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 553 SHKIPTQFEKL-QLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFED 611
                  +E    + +    +S   +   +     +    + L+ S N L+  +      
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS--PFLHLDFSNNLLTDTVFENCGH 346

Query: 612 MHGLSSIDISYNRLQGPVPFSKAF 635
           +  L ++ +  N+L+     ++  
Sbjct: 347 LTELETLILQMNQLKELSKIAEMT 370

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  136 bits (344), Expect = 7e-34
 Identities = 90/464 (19%), Positives = 163/464 (35%), Gaps = 29/464 (6%)

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239
               L LS N +       +  L+ L  L L +N +           + L  L++S N L
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 240 SGAIPSSIGNVRNLRSLFLYSNELSGSIP--KEIGNLRSLSNLDLSINRLNGVIPSSIGN 297
              I      + +LR L L  N+    +P  KE GNL  L+ L LS  +   +    + +
Sbjct: 113 Q-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 298 SN-NLSILYLYSNQLSGSIPKEIGNLKCLF-------DLELSMNNLTGVIPSSIGNLRNL 349
            + +  +L L S  + G   + +              +   S+     V       L N+
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 350 RLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNL--TNLVRVRMNQNNL 407
           +L       L   + +       L   L           K F+      +  + +    +
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 408 SGNISEAFVG----TYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE 463
           +  I             +L    + +  F     + +  F ++     S+++        
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 464 IGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIG---TLTELEL 520
             + S    LN + N     +      L  L  LIL +N L  +          ++ LE 
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLET 407

Query: 521 LDLSENRLSNAIPGSLGNLL-KVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEG 579
           LD+S N L++            +  LNLS+N  +  +   F  L  ++  LDL  N +  
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIM- 463

Query: 580 EIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
            IP  + ++++L +LN++ NQL       F+ +  L  I +  N
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  120 bits (303), Expect = 1e-28
 Identities = 87/470 (18%), Positives = 164/470 (34%), Gaps = 40/470 (8%)

Query: 109 LQYLDLSANKLSGKIPP-EIGQLSFLSELSLYSNCLNGSIP----QSLGNLSKQSLLSLY 163
            + L LS N +S ++   +I  LS L  L L  N +  S+         +L     L + 
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEY---LDVS 108

Query: 164 NNSLSGYIPPVIGNLISLSTLDLSLNQL--IGSVPFFLGNLTNLVTLHLFNNSLSGFIPS 221
           +N L   I      + SL  LDLS N    +     F GNLT L  L L           
Sbjct: 109 HNRLQN-ISC--CPMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQLDLL 164

Query: 222 TLGKLKCLSN-LNMSMNHLSGAIPSSIGNV-RNLRSLFLYSNELSGSIPKEIGNLR---S 276
            +  L      L++   H+ G    S+      +  L  + N L         N      
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 277 LSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFD-----LELS 331
           LSN+ L+      ++      +   ++L +    +  +    +   +  +      L + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 332 MNNLTGVIPSSIGN-----LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGP 386
              +T  I           L++L + ++       S         E+   +L  +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 387 IPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQL 446
                 + ++   +   QN  + ++ +    T   L  L L  N               +
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLK-NFFKVALMTKNM 402

Query: 447 GTLDFSVNNIT----GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKN 502
            +L+    ++      +       +  + VLNLSSN + G +   L     +  L L+ N
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNN 460

Query: 503 QLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552
           ++  S+P ++  L  L+ L+++ N+L +   G    L  + Y+ L +N +
Sbjct: 461 RI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  115 bits (290), Expect = 4e-27
 Identities = 77/441 (17%), Positives = 145/441 (32%), Gaps = 36/441 (8%)

Query: 64  NLTTTSLNG----TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL 119
            L    L+     +LD   F    DL +L++ +N L  I       +  L++LDLS N  
Sbjct: 77  ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDF 133

Query: 120 -SGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLS-KQSLLSLYNNSLSGYIPPVIGN 177
               +  E G L+ L+ L L +          + +L     LL L +  + G     +  
Sbjct: 134 DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193

Query: 178 LISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN 237
             + + L L  +           ++  L  L L N  L+      L           ++ 
Sbjct: 194 P-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 238 HLSGAIPS----------SIGNVRNLRSLFLYSNELSGSIPKEIGN-----LRSLSNLDL 282
           +++                    R +  L +Y+  ++  I +E        L+SL    +
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 283 SINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSS 342
                     +       ++I  L  +           +      L  + N  T  +   
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 343 IGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYF----RGPIPKNFKNLTNLV 398
              L+ L+ L L RN L  +  +       + SL                +      +++
Sbjct: 373 CSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 399 RVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITG 458
            + ++ N L+G++        P +  LDL +N     I  D      L  L+ + N +  
Sbjct: 432 VLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK- 486

Query: 459 SIPPEI-GNSSKLQVLNLSSN 478
           S+P  +    + LQ + L  N
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  115 bits (289), Expect = 5e-27
 Identities = 93/468 (19%), Positives = 173/468 (36%), Gaps = 36/468 (7%)

Query: 62  GINLTTTSLN------GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
            +   T +L+        L     S   +L  L L +N +  +          L+YLD+S
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108

Query: 116 ANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQS--LGNLSKQSLLSLYNNSLSGYIPP 173
            N+L   I      ++ L  L L  N  +  +P     GNL+K + L L        +  
Sbjct: 109 HNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR-QLDL 163

Query: 174 VIGNLISLSTLDLSLNQL-IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNL 232
           +    + LS + L L    I         + N   LHL  +  S F       +  L +L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 233 NMSMNHLSGAIPSSIGNV-------RNLRSLFLYSNELSGSIPKEIGNL---RSLSNLDL 282
            +S   L+      +            L ++ L   E +     ++      R +  L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 283 SINRLNGVIPSSIGNS-----NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337
               +   I             +L I ++ +     S          +    LS+++   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 338 VIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFR--GPIPKNFKNLT 395
           +      +  +   L   +N  + S+ Q    L  L +L+L  N  +    +    KN++
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
           +L  + ++ N+L+ +  +       ++  L+LS N   G +       P++  LD   N 
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461

Query: 456 ITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME-LGRLSSLNKLILNKN 502
           I  SIP ++ +   LQ LN++SN +   +P     RL+SL  + L+ N
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  111 bits (278), Expect = 1e-25
 Identities = 86/458 (18%), Positives = 159/458 (34%), Gaps = 37/458 (8%)

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239
             S +D S   L   VP           L L  NS+S      +  L  L  L +S N +
Sbjct: 32  LESMVDYSNRNLT-HVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 240 SGAIPSSI-GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV-IPSSIGN 297
             ++   +    ++L  L +  N L  +I      + SL +LDLS N  + + +    GN
Sbjct: 89  R-SLDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGN 144

Query: 298 SNNLSILYLYSNQLSGSIPKEIGNLK-CLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYR 356
              L+ L L + +        + +L      L+L   ++ G    S+    N  +L+L  
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVF 203

Query: 357 NELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFV 416
           +  S    Q   ++  L  L L          +      + +       N+         
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV--------- 254

Query: 417 GTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSK-----LQ 471
               TL  ++ +           W R   +  L+     IT  I  E    S+     L 
Sbjct: 255 ----TLQHIETTWKCSVKLFQFFWPR--PVEYLNIYNLTITERIDREEFTYSETALKSLM 308

Query: 472 VLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNA 531
           + ++ +              + +N  +L+ +           + +    L+ ++N  +++
Sbjct: 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 532 IPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ--LQLSELDLSQNFLEGEIPSQICN-M 588
           +      L ++  L L  N   +         +    L  LD+S N L      + C   
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

Query: 589 ESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           ES++ LNLS N L+G +  C      +  +D+  NR+ 
Sbjct: 428 ESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM 463

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  132 bits (335), Expect = 2e-33
 Identities = 84/404 (20%), Positives = 149/404 (36%), Gaps = 33/404 (8%)

Query: 229 LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRL 287
           ++ +++S+N ++    +S   +++L+ L +        I       L SL  L L  N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 288 NGVIPSSIGNSNNLSILYLYSNQL-SGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSI-G 344
             +   +     NL +L L    L    +       L  L  L L  NN+  + P+S   
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 345 NLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQ 404
           N+R   +L L  N++     + + N       LL               L+++    MN+
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------RLSSITLQDMNE 197

Query: 405 NNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI 464
             L             +++ LDLS N F   ++    RF          + I  +     
Sbjct: 198 YWLGWEKCGNPFKNT-SITTLDLSGNGFKESMA---KRFFDAIAGTKIQSLILSNSYNMG 253

Query: 465 GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDL 523
            +       +  +    G         S +    L+K+++F +L   +    T+LE L L
Sbjct: 254 SSFGHTNFKDPDNFTFKGL------EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL 306

Query: 524 SENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPS 583
           ++N ++     +   L  +  LNLS N         FE L  +L  LDLS N +   +  
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-KLEVLDLSYNHIR-ALGD 364

Query: 584 QI-CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           Q    + +L +L L  NQL       F+ +  L  I +  N   
Sbjct: 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  129 bits (325), Expect = 6e-32
 Identities = 77/384 (20%), Positives = 140/384 (36%), Gaps = 38/384 (9%)

Query: 83  PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSN 141
             + +++L  N +  +     S+L  LQ+L +        I       LS L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 142 CLNGSIPQSLGNLSKQSLLSLYNNSL-SGYIPP-VIGNLISLSTLDLSLNQL--IGSVPF 197
                   +   L+   +L+L   +L    +       L SL  L L  N +  I    F
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 198 FLGNLTNLVTLHLFNNSLS--------GFIPSTLGKLKCLSN--LNMSMNHLSGAIPSSI 247
           FL N+     L L  N +          F       L+  S    +M+   L      + 
Sbjct: 150 FL-NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 248 GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSN-------- 299
               ++ +L L  N    S+ K   +  + + +   I   +  + SS G++N        
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 300 -------NLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRL 351
                   +    L  +++  ++ K +  +   L  L L+ N +  +  ++   L +L  
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327

Query: 352 LYLYRNELSGSIPQAI-GNLVELVSLLLGFNYFRGPIPKN-FKNLTNLVRVRMNQNNLSG 409
           L L +N L  SI   +  NL +L  L L +N+ R  +    F  L NL  + ++ N L  
Sbjct: 328 LNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK- 384

Query: 410 NISEAFVGTYPTLSFLDLSHNNFH 433
           ++ +       +L  + L  N + 
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  106 bits (266), Expect = 2e-24
 Identities = 72/342 (21%), Positives = 119/342 (34%), Gaps = 40/342 (11%)

Query: 64  NLTTTSLNG----TLDEFSFSSFPDLLFLNLFNNEL-FGIIPPQI-SQLFKLQYLDLSAN 117
           +L    L+      L+  +F+   +L  L L    L   ++       L  L+ L L  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 118 KLSGKIPPEI--GQLSFLSELSLYSN---CLNGSIPQSLGNLSKQSL-------LSLYNN 165
            +  KI P      +     L L  N    +      +        L         +   
Sbjct: 140 NIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 166 SLSGYIPPVIGNLISLSTLDLSLNQLIGSVP---FFLGNLTNLVTLHLFNNSLSGFIPST 222
            L            S++TLDLS N    S+    F     T + +L L N+   G     
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG----- 253

Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLD 281
                  +  +       G   S       +++  L  +++  ++ K +  +   L  L 
Sbjct: 254 -SSFGHTNFKDPDNFTFKGLEAS------GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLT 305

Query: 282 LSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIP 340
           L+ N +N +  ++     +L  L L  N L  SI   +  NL  L  L+LS N++  +  
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGD 364

Query: 341 SSIGNLRNLRLLYLYRNELSGSIPQ-AIGNLVELVSLLLGFN 381
            S   L NL+ L L  N+L  S+P      L  L  + L  N
Sbjct: 365 QSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 46/263 (17%), Positives = 95/263 (36%), Gaps = 35/263 (13%)

Query: 395 TNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSD-WGRFPQLGTLDFSV 453
            ++  V ++ N+++     +F      L FL +        I ++ +     L  L    
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 454 NNITGSIPPEI-GNSSKLQVLNLSSNHI-GGKIPMEL-GRLSSLNKLILNKNQLFGSLPP 510
           N     +        + L+VL L+  ++ G  +       L+SL  L+L  N +   + P
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQP 146

Query: 511 EI--GTLTELELLDLSENRLSNAIPGSLGNLLKVH----------YLNLSNNEFSHKIPT 558
                 +    +LDL+ N++ +     L N    H            +++      +   
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 559 QFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKL-----NLSYNQLSGFIPNCFEDMH 613
              K    ++ LDLS N  +  +  +  +  +  K+     + SYN  S F    F+D  
Sbjct: 207 NPFKNT-SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 614 ----------GLSSIDISYNRLQ 626
                     G+ + D+S +++ 
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF 288

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 32/196 (16%), Positives = 60/196 (30%), Gaps = 11/196 (5%)

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTE 517
            +P  +        ++LS N I         RL  L  L + +      +       L+ 
Sbjct: 27  ELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF-SHKIPT-QFEKLQLQLSELDLSQN 575
           L +L L  N+      G+   L  +  L L+        +    F+ L   L  L L  N
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDN 139

Query: 576 FLEGEIPSQI-CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKA 634
            ++   P+    NM     L+L++N++         +  G     +  + +         
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 635 FRDAPAEALQGNRGLC 650
                      N  + 
Sbjct: 200 LGWEKCGNPFKNTSIT 215

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (300), Expect = 9e-29
 Identities = 70/459 (15%), Positives = 151/459 (32%), Gaps = 51/459 (11%)

Query: 153 NLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFN 212
           N + +   +    +           L +L++LD   + +          LT L  L   +
Sbjct: 19  NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITDMTGI--EKLTGLTKLICTS 73

Query: 213 NSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG 272
           N+++    S    L     L    N L+      +  +  L  L   +N+L+     ++ 
Sbjct: 74  NNITTLDLSQNTNLT---YLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVS 124

Query: 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
               L+ L+ + N L  +    + ++  L+ L  + N+    +   +     L  L+ S 
Sbjct: 125 QNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSF 179

Query: 333 NNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFK 392
           N +T +    +   + L  L    N ++  +   +   ++L  L    N        +  
Sbjct: 180 NKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEI---DVT 230

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452
            LT L     + N L+             L+ L     +       D     QL      
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTL----SKLTTLHCIQTDLL---EIDLTHNTQLIYFQAE 283

Query: 453 VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI 512
                  +  ++ ++++L +L+  +  I     ++L +   L  L LN  +L   L   +
Sbjct: 284 GCRKIKEL--DVTHNTQLYLLDCQAAGI---TELDLSQNPKLVYLYLNNTEL-TELD--V 335

Query: 513 GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLS---- 568
              T+L+ L      + +    S+G +  ++    +  +             L ++    
Sbjct: 336 SHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

Query: 569 ELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPN 607
            LD   N +   I      +       +++  LS   P 
Sbjct: 394 LLDQFGNPM--NIEPGDGGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  117 bits (294), Expect = 5e-28
 Identities = 83/480 (17%), Positives = 171/480 (35%), Gaps = 67/480 (13%)

Query: 82  FPDLLFLNLF--NNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLY 139
           FPD  F +      E+         QL  L  LD   + ++      I +L+ L++L   
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICT 72

Query: 140 SNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFL 199
           SN +  ++   L   +  + L+  +N L+  +   +  L  L+ L+   N+L       +
Sbjct: 73  SNNIT-TLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLT---KLDV 123

Query: 200 GNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLY 259
                L  L+   N+L+      +     L+ L+  +N     +   +     L +L   
Sbjct: 124 SQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 260 SNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI 319
            N+++     ++   + L+ L+   N +  +    +  +  L+ L   SN+L+  I   +
Sbjct: 179 FNKITEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID--V 229

Query: 320 GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLG 379
             L  L   + S+N LT +    +  L  L  L+  + +L   I   + +  +L+     
Sbjct: 230 TPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAE 283

Query: 380 FNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS- 438
                  +  +  + T L  +          I+E  +   P L +L L++     +++  
Sbjct: 284 GCRKIKEL--DVTHNTQLYLLDCQAA----GITELDLSQNPKLVYLYLNNT----ELTEL 333

Query: 439 DWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLI 498
           D     +L +L     +I       +G    L     +             +  ++ K  
Sbjct: 334 DVSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEG-----------QTITMPKET 380

Query: 499 LNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPT 558
           L  N L  ++ P        +LLD   N ++  I    G +       ++    S   P 
Sbjct: 381 LTNNSLTIAVSP--------DLLDQFGNPMN--IEPGDGGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  111 bits (279), Expect = 4e-26
 Identities = 67/354 (18%), Positives = 124/354 (35%), Gaps = 40/354 (11%)

Query: 79  FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSL 138
                 L  L   +N +  +    +SQ   L YL   +NKL+     ++  L+ L+ L+ 
Sbjct: 60  IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNC 113

Query: 139 YSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFF 198
            +N L          L+    L+   N+L+      + +   L+ LD  LN+ I  +   
Sbjct: 114 DTNKLTKLDVSQNPLLTY---LNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDV- 166

Query: 199 LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFL 258
               T L TL    N ++      + + K L+ LN   N+++      +     L  L  
Sbjct: 167 -TPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDC 219

Query: 259 YSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKE 318
            SN+L+  I   +  L  L+  D S+N L  +    +   + L+ L+     L      E
Sbjct: 220 SSNKLT-EID--VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL-----E 268

Query: 319 IGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLL 378
           I        +         +    + +   L LL      ++  +   +    +LV L L
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYL 325

Query: 379 GFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF 432
                   +     + T L  +     ++  + S   VG  P L+    +    
Sbjct: 326 NNTELTE-LD--VSHNTKLKSLSCVNAHIQ-DFSS--VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 48/306 (15%), Positives = 101/306 (33%), Gaps = 57/306 (18%)

Query: 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGF 380
           N          M         S   L  L  L  + + ++  +   I  L  L  L+   
Sbjct: 19  NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTS 73

Query: 381 NYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDW 440
           N        +    TNL  +  + N L+       V     L++L+   N        D 
Sbjct: 74  NNITTL---DLSQNTNLTYLACDSNKLT----NLDVTPLTKLTYLNCDTNKL---TKLDV 123

Query: 441 GRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILN 500
            + P L  L+ + N +T     ++ ++++L  L+   N       +++   + L  L  +
Sbjct: 124 SQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCS 178

Query: 501 KNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQF 560
            N++      ++     L  L+   N ++      L   +++ +L+ S+N          
Sbjct: 179 FNKITEL---DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN---------- 222

Query: 561 EKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDI 620
                +L+E+D++                 L   + S N L+    +       L+++  
Sbjct: 223 -----KLTEIDVTPL-------------TQLTYFDCSVNPLTELDVSTLS---KLTTLHC 261

Query: 621 SYNRLQ 626
               L 
Sbjct: 262 IQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 11/155 (7%)

Query: 64  NLTTTSLNGT-LDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK 122
            LTT     T L E   +    L++          I    ++   +L  LD  A  ++ +
Sbjct: 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGIT-E 311

Query: 123 IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLS 182
           +   + Q   L  L L +  L   +   + + +K   LS  N  +  +    +G + +L+
Sbjct: 312 LD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALN 364

Query: 183 TLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSG 217
               +  Q I      L N +  + +        G
Sbjct: 365 NNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (296), Expect = 3e-28
 Identities = 61/250 (24%), Positives = 99/250 (39%), Gaps = 8/250 (3%)

Query: 160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI 219
           +      LS  +P  I    +   L+L  N +         +L +L  L L  NS+    
Sbjct: 59  VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 220 PSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLS 278
                 L  L+ L +  N L+     +   +  LR L+L +N +  SIP      + SL 
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLM 174

Query: 279 NLDLS-INRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337
            LDL  + +L  +   +     NL  L L    +   +P  +  L  L +LE+S N+   
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPE 232

Query: 338 VIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397
           + P S   L +L+ L++  +++S     A   L  LV L L  N         F  L  L
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292

Query: 398 VRVRMNQNNL 407
           V + ++ N  
Sbjct: 293 VELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (273), Expect = 3e-25
 Identities = 54/211 (25%), Positives = 82/211 (38%), Gaps = 10/211 (4%)

Query: 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSN 478
               +L+L  NN     +  +     L  L    N+I   I        + L  L L  N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 479 HIGGKIPME-LGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSE-NRLSNAIPGS 535
            +   IP      LS L +L L  N +  S+P      +  L  LDL E  +L     G+
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 536 LGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLN 595
              L  + YLNL        +P     L   L EL++S N      P     + SL KL 
Sbjct: 192 FEGLFNLKYLNLGMCNIKD-MPN-LTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 596 LSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           +  +Q+S    N F+ +  L  +++++N L 
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (270), Expect = 5e-25
 Identities = 62/234 (26%), Positives = 97/234 (41%), Gaps = 9/234 (3%)

Query: 82  FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYS 140
             +  +LNL  N +  I       L  L+ L L  N +  +I       L+ L+ L L+ 
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 141 NCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVI-GNLISLSTLDLSLNQLIGSVP-FF 198
           N L      +   LSK   L L NN +   IP      + SL  LDL   + +  +    
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 199 LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFL 258
              L NL  L+L   ++   +P  L  L  L  L MS NH     P S   + +L+ L++
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 259 YSNELSGSIPKE-IGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL 311
            ++++S  I +     L SL  L+L+ N L+ +          L  L+L+ N  
Sbjct: 250 MNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  105 bits (263), Expect = 5e-24
 Identities = 62/282 (21%), Positives = 109/282 (38%), Gaps = 34/282 (12%)

Query: 347 RNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNN 406
                +   R  LS  +PQ I        L L  N  +      F++L +L  +++ +N+
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 407 LSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-G 465
           +      AF G   +L+ L+L  N     ++                      IP     
Sbjct: 111 IRQIEVGAFNGL-ASLNTLELFDN----WLTV---------------------IPSGAFE 144

Query: 466 NSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLS 524
             SKL+ L L +N I         R+ SL +L L + +    +       L  L+ L+L 
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 525 ENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQ 584
              + + +P +L  L+ +  L +S N F    P  F  L   L +L +  + +     + 
Sbjct: 205 MCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNA 261

Query: 585 ICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
              + SLV+LNL++N LS    + F  +  L  + + +N   
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  103 bits (259), Expect = 1e-23
 Identities = 58/234 (24%), Positives = 85/234 (36%), Gaps = 15/234 (6%)

Query: 62  GINLTTTSLN------GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDL 114
           GI   T  LN        +   +F     L  L L  N +   I     + L  L  L+L
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLEL 130

Query: 115 SANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP 173
             N L+  IP      LS L EL L +N +      +   +     L L       YI  
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 174 -VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNL 232
                L +L  L+L +  +   +P     L  L  L +  N      P +   L  L  L
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK-DMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSIN 285
            +  + +S    ++   + +L  L L  N LS S+P ++   LR L  L L  N
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPE-IGQLS 131
            + E +F    +L +LNL    +  +  P ++ L  L+ L++S N    +I P     LS
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLS 242

Query: 132 FLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQ 190
            L +L + ++ ++     +   L+    L+L +N+LS  +P  +   L  L  L L  N 
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP 301

Query: 191 L 191
            
Sbjct: 302 W 302

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  119 bits (299), Expect = 3e-28
 Identities = 59/326 (18%), Positives = 112/326 (34%), Gaps = 35/326 (10%)

Query: 64  NLTTTSLNGTLDEF--SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG 121
           N    +++GT  ++  ++  +          NE   ++      + +   L L+   LS 
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLNLS- 72

Query: 122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL 181
            +P  +     ++ L +  N L  S+P+   +L     L   +N LS  +P +  +   L
Sbjct: 73  SLPDNLPPQ--ITVLEITQNAL-ISLPELPASLEY---LDACDNRLS-TLPELPAS---L 122

Query: 182 STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241
             LD+  NQL   +P     L     ++  NN L+  +P     L+    L++  N L+ 
Sbjct: 123 KHLDVDNNQLT-MLPELPALLE---YINADNNQLT-MLPELPTSLE---VLSVRNNQLT- 173

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN----LDLSINRLNGVIPSSIGN 297
            +P       +L +L + +N L  S+P                    NR+   IP +I +
Sbjct: 174 FLPELPE---SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228

Query: 298 SNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357
            +    + L  N LS  I + +       D        +        N  +  L      
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTA 286

Query: 358 ELSGSIPQAIGNLVELVSLLLGFNYF 383
               +    +  +          N F
Sbjct: 287 WFPENKQSDVSQIWHAFEHEEHANTF 312

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  113 bits (285), Expect = 2e-26
 Identities = 59/327 (18%), Positives = 116/327 (35%), Gaps = 39/327 (11%)

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGV---IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL 322
           SI   I N  SLS  +   N ++G      S+       ++     N+    + +    +
Sbjct: 2   SIMLPINNNFSLSQ-NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLI 58

Query: 323 KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNY 382
               +L+L+  NL+  +P ++     + +L + +N L  S+P+   +L  L       N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEYLD---ACDNR 111

Query: 383 FRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGR 442
               +P+   +L +L        ++  N           L +++  +N    Q++     
Sbjct: 112 LST-LPELPASLKHL--------DVDNNQLTMLPELPALLEYINADNN----QLTMLPEL 158

Query: 443 FPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNK----LI 498
              L  L    N +T  +P    +   L+ L++S+N +   +P    R     +      
Sbjct: 159 PTSLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLES-LPAVPVRNHHSEETEIFFR 213

Query: 499 LNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPT 558
             +N++   +P  I +L     + L +N LS+ I  SL         +     FS     
Sbjct: 214 CRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 559 QFEKLQLQLSELDLSQNFLEGEIPSQI 585
           Q     L     D    +      S +
Sbjct: 273 QN---TLHRPLADAVTAWFPENKQSDV 296

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  108 bits (271), Expect = 9e-25
 Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 33/244 (13%)

Query: 387 IPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQL 446
               +           N+N     + E         S L L+  N    +  +    PQ+
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL---INQFSELQLNRLNLS-SLPDNLP--PQI 82

Query: 447 GTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFG 506
             L+ + N +  S+P    +   L+ L+   N +   +P     L  L+   ++ NQL  
Sbjct: 83  TVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPASLKHLD---VDNNQL-T 133

Query: 507 SLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQ 566
            LP     L  +   +   N+L+  +P    +L     L++ NN+ +  +P   E L+  
Sbjct: 134 MLPELPALLEYI---NADNNQLT-MLPELPTSL---EVLSVRNNQLTF-LPELPESLE-- 183

Query: 567 LSELDLSQNFLEGEIPSQICNMESL----VKLNLSYNQLSGFIPNCFEDMHGLSSIDISY 622
              LD+S N LE  +P+            +      N+++  IP     +    +I +  
Sbjct: 184 --ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 623 NRLQ 626
           N L 
Sbjct: 240 NPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (261), Expect = 1e-23
 Identities = 57/330 (17%), Positives = 102/330 (30%), Gaps = 62/330 (18%)

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEI----GNLKCLFDLELSMNNLTGVIPSSIGNL 346
           I   I N+ +LS    + N +S     +        +       + N    ++   +  +
Sbjct: 3   IMLPINNNFSLSQN-SFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--I 58

Query: 347 RNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNN 406
                L L R  LS S+P  +    ++  L +  N     +P+   +L  L         
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEYL--------- 105

Query: 407 LSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGN 466
                              D   N    ++S+       L  LD   N +T  +P     
Sbjct: 106 -------------------DACDN----RLSTLPELPASLKHLDVDNNQLT-MLPELPAL 141

Query: 467 SSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSEN 526
              L+ +N  +N +   +P     L  L+   +  NQL   LP    +L  L   D+S N
Sbjct: 142 ---LEYINADNNQLT-MLPELPTSLEVLS---VRNNQL-TFLPELPESLEAL---DVSTN 190

Query: 527 RLSN--AIPGSLGNLLKVH-YLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPS 583
            L +  A+P    +  +   +     N  +H IP     L      + L  N L      
Sbjct: 191 LLESLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLD-PTCTIILEDNPLS-SRIR 247

Query: 584 QICNMESLVKLNLSYNQLSGFIPNCFEDMH 613
           +  + ++                     +H
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.4 bits (172), Expect = 1e-12
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 21/222 (9%)

Query: 79  FSSFPDLL----FLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLS 134
            +  P+L     ++N  NN+L  ++P   + L   + L +  N+L+  +P     L    
Sbjct: 132 LTMLPELPALLEYINADNNQL-TMLPELPTSL---EVLSVRNNQLT-FLPELPESLE--- 183

Query: 135 ELSLYSNCLNGSIPQSLGNLSK----QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQ 190
            L + +N L  S+P            +       N ++ +IP  I +L    T+ L  N 
Sbjct: 184 ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 191 LIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNV 250
           L   +   L   T     H      S                +           S +  +
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQI 299

Query: 251 RNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIP 292
            +      ++N  S +    + +  S  N      ++   + 
Sbjct: 300 WHAFEHEEHANTFS-AFLDRLSDTVSARNTSGFREQVAAWLE 340

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  114 bits (287), Expect = 6e-28
 Identities = 70/311 (22%), Positives = 117/311 (37%), Gaps = 24/311 (7%)

Query: 276 SLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNL 335
            L  +  S   L   +P  +    + ++L L +N+++     +  NLK L  L L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 336 TGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395
           + + P +   L  L  LYL +N+L   +P+       L  L +  N         F  L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLN 145

Query: 396 NLVRVRMNQNNL-SGNISE-AFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSV 453
            ++ V +  N L S  I   AF G    LS++ ++  N     +   G  P L  L    
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNIT---TIPQGLPPSLTELHLDG 201

Query: 454 NNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI 512
           N IT  +        + L  L LS N I       L     L +L LN N+L   +P  +
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGL 259

Query: 513 GTLTELELLDLSENRLSN------AIPGSLGNLLKVHYLNLSNNEFSHKI--PTQFEKLQ 564
                ++++ L  N +S         PG          ++L +N   +    P+ F  + 
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

Query: 565 LQLSELDLSQN 575
              + + L   
Sbjct: 320 -VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  113 bits (286), Expect = 9e-28
 Identities = 64/310 (20%), Positives = 120/310 (38%), Gaps = 43/310 (13%)

Query: 62  GINLTTTSLN------GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
            +   T  L+        + +  F +  +L  L L NN++  I P   + L KL+ L LS
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 116 ANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL-SGYIPP- 173
            N+L  ++P        L EL ++ N +          L++  ++ L  N L S  I   
Sbjct: 109 KNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
               +  LS + ++    I ++P   G   +L  LHL  N ++    ++L  L  L+ L 
Sbjct: 166 AFQGMKKLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPS 293
           +S N +S     S+ N  +LR L L +N+L   +P  + + + +  + L  N ++ +  +
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 294 SIG------NSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLR 347
                       + S + L+SN +                          + PS+   + 
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQ----------------------YWEIQPSTFRCVY 319

Query: 348 NLRLLYLYRN 357
               + L   
Sbjct: 320 VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 56/283 (19%), Positives = 99/283 (34%), Gaps = 42/283 (14%)

Query: 348 NLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNL 407
           +LR++      L   +P+ +    +   L L  N        +FKNL NL  + +  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 408 SGNISEAFVGTYPTLSFLDLSHNNFHGQISS-DWGRFPQLGTLDFSVNNITGSIPPEI-G 465
           S     AF      L  L LS N    Q+          L  L    N IT  +   +  
Sbjct: 89  SKISPGAFAPL-VKLERLYLSKN----QLKELPEKMPKTLQELRVHENEIT-KVRKSVFN 142

Query: 466 NSSKLQVLNLSSNHIGGKI--PMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDL 523
             +++ V+ L +N +            +  L+ + +    +  ++P   G    L  L L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHL 199

Query: 524 SENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPS 583
             N+++     SL  L  +  L LS N                +S +D            
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFN---------------SISAVD----------NG 234

Query: 584 QICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
            + N   L +L+L+ N+L   +P    D   +  + +  N + 
Sbjct: 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 16/224 (7%)

Query: 74  LDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL-SGKIPPEI-GQLS 131
           L E        L  L +  NE+  +     + L ++  ++L  N L S  I       + 
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 132 FLSELSLYSNCLNGSIPQSL-GNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQ 190
            LS + +    +  +IPQ L  +L++   L L  N ++      +  L +L+ L LS N 
Sbjct: 172 KLSYIRIADTNIT-TIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 191 LIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG------AIP 244
           +       L N  +L  LHL NN L   +P  L   K +  + +  N++S         P
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 245 SSIGNVRNLRSLFLYSNELS-GSIPKEI-GNLRSLSNLDLSINR 286
                  +   + L+SN +    I       +   + + L   +
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552
            L  +  +   L   +P ++   T L  LDL  N+++    G   NL  +H L L NN+ 
Sbjct: 32  HLRVVQCSDLGL-EKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 553 SHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDM 612
           S   P  F  L  +L  L LS+N L+ E+P ++   ++L +L +  N+++    + F  +
Sbjct: 89  SKISPGAFAPLV-KLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGL 144

Query: 613 HGLSSIDISYNRLQGPVPFSKAFRDAPA 640
           + +  +++  N L+     + AF+    
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKK 172

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (285), Expect = 1e-27
 Identities = 57/301 (18%), Positives = 102/301 (33%), Gaps = 23/301 (7%)

Query: 348 NLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNL 407
           +LR++      L  ++P+ I    +   L L  N        +FK L +L  + +  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 408 SGNISEAFVGTYPTLSFLDLSHNNFHGQISS-DWGRFPQLGTLDFSVNNITGSIPPEI-G 465
           S    +AF      L  L +S N     +          L  L    N I   +P  +  
Sbjct: 91  SKIHEKAFSPL-RKLQKLYISKN----HLVEIPPNLPSSLVELRIHDNRIR-KVPKGVFS 144

Query: 466 NSSKLQVLNLSSNHIG-GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLS 524
               +  + +  N +              LN L +++ +L   +P        L  L L 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGIPK--DLPETLNELHLD 201

Query: 525 ENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQ 584
            N++       L    K++ L L +N+           L   L EL L  N L   +P+ 
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLS-RVPAG 259

Query: 585 ICNMESLVKLNLSYNQLSGFIPNCFEDMHG------LSSIDISYNRLQGPVPFSKAFRDA 638
           + +++ L  + L  N ++    N F  +         + I +  N +         FR  
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 639 P 639
            
Sbjct: 320 T 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  109 bits (274), Expect = 3e-26
 Identities = 70/309 (22%), Positives = 113/309 (36%), Gaps = 21/309 (6%)

Query: 276 SLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNL 335
            L  +  S   L   +P  I  S + ++L L +N +S     +   L+ L+ L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 336 TGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395
           + +   +   LR L+ LY+ +N L   IP  +     LV L +  N  R      F  L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
           N+  + M  N L  +  E        L++L +S                 L  L    N 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT---GIPKDLPETLNELHLDHNK 204

Query: 456 ITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGT 514
           I  +I  E     SKL  L L  N I       L  L +L +L L+ N+L   +P  +  
Sbjct: 205 IQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPD 262

Query: 515 LTELELLDLSENRLSN------AIPGSLGNLLKVHYLNLSNNEFSHKI--PTQFEKLQLQ 566
           L  L+++ L  N ++          G        + ++L NN   +    P  F  +   
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT-D 321

Query: 567 LSELDLSQN 575
              +     
Sbjct: 322 RLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (269), Expect = 1e-25
 Identities = 61/292 (20%), Positives = 105/292 (35%), Gaps = 36/292 (12%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSF 132
            L +  F     L  L L NN++  I     S L KLQ L +S N L  +IPP     S 
Sbjct: 68  ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSS 124

Query: 133 LSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL-SGYIPPVIGNLISLSTLDLSLNQL 191
           L EL ++ N +          L   + + +  N L +    P   + + L+ L +S  +L
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

Query: 192 IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVR 251
              +P        L  LHL +N +       L +   L  L +  N +      S+  + 
Sbjct: 185 T-GIP--KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 252 NLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSI------GNSNNLSILY 305
            LR L L +N+LS  +P  + +L+ L  + L  N +  V  +              + + 
Sbjct: 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 306 LYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357
           L++N +                          V P++   + +   +     
Sbjct: 301 LFNNPVP----------------------YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 17/224 (7%)

Query: 74  LDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL-SGKIPPEIGQLSF 132
           L E   +    L+ L + +N +  +     S L  +  +++  N L +    P       
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 133 LSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQL 191
           L+ L +    L G        L++   L L +N +   I    +     L  L L  NQ+
Sbjct: 174 LNYLRISEAKLTGIPKDLPETLNE---LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI 229

Query: 192 IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI---- 247
                  L  L  L  LHL NN LS  +P+ L  LK L  + +  N+++  +  +     
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPV 287

Query: 248 ---GNVRNLRSLFLYSNELS-GSIPKEI-GNLRSLSNLDLSINR 286
                      + L++N +    +       +     +     +
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  113 bits (285), Expect = 5e-27
 Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 8/250 (3%)

Query: 160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI 219
           +     +L   +P  I    +   L+L  NQ+         +L +L  L L  N +    
Sbjct: 48  VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104

Query: 220 PSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLS 278
                 L  L+ L +  N L+     +   +  L+ L+L +N +  SIP      + SL 
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLR 163

Query: 279 NLDLS-INRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337
            LDL  + RL+ +   +    +NL  L L    L   IP  +  L  L +L+LS N+L+ 
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221

Query: 338 VIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397
           + P S   L +L+ L++ ++++      A  NL  LV + L  N         F  L +L
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281

Query: 398 VRVRMNQNNL 407
            R+ ++ N  
Sbjct: 282 ERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (278), Expect = 5e-26
 Identities = 66/282 (23%), Positives = 108/282 (38%), Gaps = 41/282 (14%)

Query: 275 RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNN 334
              S +      L   +P  I  S N  +L L+ NQ+         +L+ L  L+LS N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 335 LTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNL 394
           +  +   +   L NL  L L+ N L+ +IP                          F  L
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIP-----------------------NGAFVYL 135

Query: 395 TNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS-DWGRF---PQLGTLD 450
           + L  + +  N +    S AF    P+L  LDL       ++S    G F     L  L+
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELK---RLSYISEGAFEGLSNLRYLN 191

Query: 451 FSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME-LGRLSSLNKLILNKNQLFGSLP 509
            ++ N+   I P +    KL  L+LS NH+   I       L  L KL + ++Q+   + 
Sbjct: 192 LAMCNLR-EI-PNLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQI-QVIE 247

Query: 510 PE-IGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
                 L  L  ++L+ N L+         L  +  ++L +N
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  107 bits (270), Expect = 5e-25
 Identities = 57/210 (27%), Positives = 83/210 (39%), Gaps = 8/210 (3%)

Query: 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSN 478
                L+L  N       + +     L  L  S N+I  +I        + L  L L  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 479 HIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSE-NRLSNAIPGSL 536
            +          LS L +L L  N +  S+P      +  L  LDL E  RLS    G+ 
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 537 GNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNL 596
             L  + YLNL+       IP     L  +L ELDLS N L    P     +  L KL +
Sbjct: 182 EGLSNLRYLNLAMCNLRE-IPN-LTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 597 SYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
             +Q+     N F+++  L  I++++N L 
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  103 bits (259), Expect = 1e-23
 Identities = 70/283 (24%), Positives = 119/283 (42%), Gaps = 36/283 (12%)

Query: 347 RNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNN 406
                +   R  L   +P  I        L L  N  +     +FK+L +L  +++++N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 407 LSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-G 465
           +      AF G    L+ L+L  N                         +T +IP     
Sbjct: 100 IRTIEIGAFNGL-ANLNTLELFDNR------------------------LT-TIPNGAFV 133

Query: 466 NSSKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDL 523
             SKL+ L L +N I   IP     R+ SL +L L + +    +       L+ L  L+L
Sbjct: 134 YLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 524 SENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPS 583
           +   L   IP +L  L+K+  L+LS N  S   P  F+ L   L +L + Q+ ++    +
Sbjct: 193 AMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERN 249

Query: 584 QICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
              N++SLV++NL++N L+    + F  +H L  I + +N   
Sbjct: 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (256), Expect = 3e-23
 Identities = 59/233 (25%), Positives = 89/233 (38%), Gaps = 13/233 (5%)

Query: 62  GINLTTTSLN------GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
           GI+  T  LN        +   SF     L  L L  N +  I     + L  L  L+L 
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 116 ANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP- 173
            N+L+  IP      LS L EL L +N +      +   +     L L       YI   
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
               L +L  L+L++  L   +P     L  L  L L  N LS   P +   L  L  L 
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIPNLT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSIN 285
           M  + +     ++  N+++L  + L  N L+  +P ++   L  L  + L  N
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 5/145 (3%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANKLSGKIPPEIGQLS 131
           ++  ++F+  P L  L+L   +    I       L  L+YL+L+   L     P +  L 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLI 207

Query: 132 FLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQ 190
            L EL L  N L+   P S   L     L +  + +   I      NL SL  ++L+ N 
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNN 266

Query: 191 LIGSVPFFLGNLTNLVTLHLFNNSL 215
           L          L +L  +HL +N  
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHNPW 291

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  109 bits (274), Expect = 2e-26
 Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 17/256 (6%)

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFN--YFRG 385
           +  +   LT  +P+ I    +   L L  N+L          L +L  L L  N   F+G
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 386 PIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRF-- 443
              ++    T+L  + ++ N +   +S  F+G    L  LD  H+N   +  S++  F  
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL-EQLEHLDFQHSNL--KQMSEFSVFLS 124

Query: 444 -PQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPME-LGRLSSLNKLILN 500
              L  LD S  +        I    S L+VL ++ N        +    L +L  L L+
Sbjct: 125 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 501 KNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQ 559
           + QL   L P    +L+ L++L++S N   +        L  +  L+ S N        +
Sbjct: 184 QCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 560 FEKLQLQLSELDLSQN 575
            +     L+ L+L+QN
Sbjct: 243 LQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  107 bits (268), Expect = 1e-25
 Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 9/253 (3%)

Query: 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS- 168
             +  ++  L+  +P  I   S  + L L SN L          L++ + LSL +N LS 
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 169 -GYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIP-STLGKL 226
            G          SL  LDLS N +I     FLG L  L  L   +++L      S    L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 227 KCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSIN 285
           + L  L++S  H   A       + +L  L +  N    +   +I   LR+L+ LDLS  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 286 RLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGN 345
           +L  + P++  + ++L +L +  N            L  L  L+ S+N++       + +
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 346 L-RNLRLLYLYRN 357
              +L  L L +N
Sbjct: 246 FPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  107 bits (268), Expect = 1e-25
 Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 8/212 (3%)

Query: 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNIT-GSIPPEI-GNSSKLQVLNLSS 477
            + + L+L  N         + +  QL  L  S N ++      +    ++ L+ L+LS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 478 NHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSL 536
           N +   +      L  L  L    + L       +  +L  L  LD+S      A  G  
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 537 GNLLKVHYLNLSNNEFSHKIPTQ-FEKLQLQLSELDLSQNFLEGEIPSQI-CNMESLVKL 594
             L  +  L ++ N F        F +L+  L+ LDLSQ  LE ++      ++ SL  L
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLE-QLSPTAFNSLSSLQVL 204

Query: 595 NLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           N+S+N         ++ ++ L  +D S N + 
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  104 bits (261), Expect = 9e-25
 Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 8/237 (3%)

Query: 82  FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK-IPPEIGQ-LSFLSELSLY 139
                 L L +N+L  +      +L +L  L LS+N LS K    +     + L  L L 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 140 SNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP--VIGNLISLSTLDLSLNQLIGSVPF 197
            N +  ++  +   L +   L   +++L   +    V  +L +L  LD+S      +   
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 198 FLGNLTNLVTLHLFNNS-LSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
               L++L  L +  NS    F+P    +L+ L+ L++S   L    P++  ++ +L+ L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGN-SNNLSILYLYSNQLS 312
            +  N            L SL  LD S+N +       + +  ++L+ L L  N  +
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (255), Expect = 8e-24
 Identities = 55/239 (23%), Positives = 82/239 (34%), Gaps = 14/239 (5%)

Query: 62  GINLTTTSLN------GTLDEFSFSSFPDLLFLNLFNNEL--FGIIPPQISQLFKLQYLD 113
           GI  + T L        +L    F     L  L+L +N L   G           L+YLD
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 114 LSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSL-GNLSKQSLLSLYNNSLSGYIP 172
           LS N +   +      L  L  L    + L      S+  +L     L + +        
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 173 PVIGNLISLSTLDLSLNQLIGSV-PFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN 231
            +   L SL  L ++ N    +  P     L NL  L L    L    P+    L  L  
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 232 LNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI--GNLRSLSNLDLSINRLN 288
           LNMS N+           + +L+ L    N +  +  K+       SL+ L+L+ N   
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 10/153 (6%)

Query: 492 SSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLS--NAIPGSLGNLLKVHYLNLS 548
           SS  +L L  N+L  SLP  +   LT+L  L LS N LS       S      + YL+LS
Sbjct: 28  SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 549 NNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQ--ICNMESLVKLNLSYNQLSGFIP 606
            N     + + F  L+ QL  LD   + L+ ++       ++ +L+ L++S+        
Sbjct: 87  FNGVIT-MSSNFLGLE-QLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 607 NCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAP 639
             F  +  L  + ++ N  Q        F +  
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFL-PDIFTELR 175

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (261), Expect = 2e-24
 Identities = 59/298 (19%), Positives = 110/298 (36%), Gaps = 44/298 (14%)

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKC 324
           SIP  +    ++ +LDLS NR+  +  S +    NL  L L SN ++ +I ++   +L  
Sbjct: 45  SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGS 101

Query: 325 LFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAI--GNLVELVSLLLGFNY 382
           L  L+LS N L+ +  S    L +L  L L  N    ++ +     +L +L  L +G   
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMD 160

Query: 383 FRGPIPKN-FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWG 441
               I +  F  LT L  + ++ ++L          +Y   S   +              
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQ---------SYEPKSLKSI-------------- 197

Query: 442 RFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMEL--------GRLS 492
               +  L   +      +       +S ++ L L    +      EL         +  
Sbjct: 198 --QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
           +   + +    LF  +   +  ++ L  L+ S N+L +   G    L  +  + L  N
Sbjct: 255 TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (257), Expect = 7e-24
 Identities = 53/268 (19%), Positives = 95/268 (35%), Gaps = 17/268 (6%)

Query: 82  FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYS 140
              +  L+L NN +  I    + +   LQ L L++N ++  I  +    L  L  L L  
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 141 NCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP--VIGNLISLSTLDLSLNQLIGSVPF- 197
           N L+         LS  + L+L  N     +    +  +L  L  L +        +   
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 198 FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLF 257
               LT L  L +  + L  + P +L  ++ +S+L + M      +   +    ++  L 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 258 LYSNELSGSIPKEI--------GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSN 309
           L   +L      E+            +  N+ ++   L   +   +   + L  L    N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 310 QLSGSIPKEI-GNLKCLFDLELSMNNLT 336
           QL  S+P  I   L  L  + L  N   
Sbjct: 288 QLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 98.7 bits (246), Expect = 2e-22
 Identities = 55/280 (19%), Positives = 110/280 (39%), Gaps = 24/280 (8%)

Query: 203 TNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNE 262
             + +L L NN ++    S L +   L  L ++ N ++     S  ++ +L  L L  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 263 LSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSI-GNSNNLSILYLYSNQLSGSIPKEI- 319
           LS ++       L SL+ L+L  N    +  +S+  +   L IL + +      I ++  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 320 GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLG 379
             L  L +LE+  ++L    P S+ +++N+  L L+  +    +   +     +  L L 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 380 FNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSD 439
                                  + + LS   + + +    T   + ++  +   Q+   
Sbjct: 231 DTDLDTF----------------HFSELSTGETNSLIK-KFTFRNVKITDESLF-QVMKL 272

Query: 440 WGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSN 478
             +   L  L+FS N +  S+P  I    + LQ + L +N
Sbjct: 273 LNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.6 bits (233), Expect = 9e-21
 Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 21/242 (8%)

Query: 64  NLTTTSLNG----TLDEFSFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANK 118
           NL    L      T++E SFSS   L  L+L  N L   +       L  L +L+L  N 
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNP 135

Query: 119 LSGKIPPEI--GQLSFLSELSLYSNCLNGSIP-QSLGNLSKQSLLSLYNNSLSGYIPPVI 175
               +        L+ L  L + +      I  +    L+    L +  + L  Y P  +
Sbjct: 136 YK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194

Query: 176 GNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF--------IPSTLGKLK 227
            ++ ++S L L + Q I  +  F+   +++  L L +  L  F          ++L K  
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 228 CLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINR 286
              N+ ++   L   +   +  +  L  L    N+L  S+P  I   L SL  + L  N 
Sbjct: 255 TFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312

Query: 287 LN 288
            +
Sbjct: 313 WD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 58/304 (19%), Positives = 110/304 (36%), Gaps = 51/304 (16%)

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387
           L+LS N +T +  S +    NL+ L L  N ++ +I                        
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE----------------------- 92

Query: 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRF---P 444
             +F +L +L  + ++ N LS   S  F     +L+FL+L  N +  +   +   F    
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL-SSLTFLNLLGNPY--KTLGETSLFSHLT 149

Query: 445 QLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503
           +L  L     +    I  +     + L+ L + ++ +    P  L  + +++ LIL+  Q
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209

Query: 504 LFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK 562
               L        + +E L+L +  L              H+  LS  E +        K
Sbjct: 210 H-ILLLEIFVDVTSSVECLELRDTDLDT-----------FHFSELSTGETN-----SLIK 252

Query: 563 LQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISY 622
                  + ++   L  ++   +  +  L++L  S NQL       F+ +  L  I +  
Sbjct: 253 K-FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

Query: 623 NRLQ 626
           N   
Sbjct: 311 NPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.3 bits (219), Expect = 6e-19
 Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 23/248 (9%)

Query: 395 TNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS-DWGRF---PQLGTLD 450
             +  + ++ N ++   +         L  L L+ N     I++ +   F     L  LD
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQR-CVNLQALVLTSN----GINTIEEDSFSSLGSLEHLD 106

Query: 451 FSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILNKNQLFGSL 508
            S N ++ ++        S L  LNL  N         L   L+ L  L +     F  +
Sbjct: 107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 509 PPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQL 567
             +    LT LE L++  + L +  P SL ++  V +L L   +    +    +     +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-SV 224

Query: 568 SELDLSQNFLEGEIPSQIC--------NMESLVKLNLSYNQLSGFIPNCFEDMHGLSSID 619
             L+L    L+    S++            +   + ++   L   +      + GL  ++
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELE 283

Query: 620 ISYNRLQG 627
            S N+L+ 
Sbjct: 284 FSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 6/185 (3%)

Query: 444 PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503
            + G    S  ++  SIP  +  +  ++ L+LS+N I      +L R  +L  L+L  N 
Sbjct: 31  DRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87

Query: 504 LFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK 562
           +  ++  +   +L  LE LDLS N LSN        L  + +LNL  N +     T    
Sbjct: 88  I-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 563 LQLQLSELDLSQNFLEGEIPSQI-CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDIS 621
              +L  L +       +I  +    +  L +L +  + L  + P   + +  +S + + 
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 622 YNRLQ 626
             +  
Sbjct: 207 MKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 9/191 (4%)

Query: 443 FPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILN 500
              + +LD S N IT  I          LQ L L+SN I   I  +    L SL  L L+
Sbjct: 51  TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS 108

Query: 501 KNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSL-GNLLKVHYLNLSNNEFSHKIPT 558
            N L  +L       L+ L  L+L  N        SL  +L K+  L + N +   KI  
Sbjct: 109 YNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 559 Q-FEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSS 617
           + F  L   L EL++  + L+   P  + +++++  L L   Q    +    +    +  
Sbjct: 168 KDFAGLT-FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 618 IDISYNRLQGP 628
           +++    L   
Sbjct: 227 LELRDTDLDTF 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  102 bits (256), Expect = 6e-24
 Identities = 64/316 (20%), Positives = 124/316 (39%), Gaps = 29/316 (9%)

Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162
              L     +    + ++         L  ++ LS +   +  +I   +  L+    L L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLEL 70

Query: 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
            +N ++   P  + NL  ++ L+LS N L       +  L ++ TL L +  ++   P  
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDL 282
           L  L  L  L + +N ++    S +  + NL+ L + + ++S   P  + NL  L+ L  
Sbjct: 125 LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 283 SINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSS 342
             N+++ +  S + +  NL  ++L +NQ+S   P  + N   LF + L+   +T      
Sbjct: 181 DDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 343 IGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRM 402
             NL    ++               G  +   ++     Y    +  N  +  N V    
Sbjct: 237 NNNLVVPNVVKGP-----------SGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTF 285

Query: 403 NQNNLSGNISEAFVGT 418
           NQ+    N +  F GT
Sbjct: 286 NQSVTFKNTTVPFSGT 301

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 21/259 (8%)

Query: 79  FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSL 138
                +L+ L L +N++  + P  +  L K+  L+LS N L   +   I  L  +  L L
Sbjct: 59  VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDL 114

Query: 139 YSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFF 198
            S  +    P  L  LS   +L L  N ++   P  +  L +L  L +   Q+    P  
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168

Query: 199 LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFL 258
           L NL+ L TL   +N +S    S L  L  L  +++  N +S    S + N  NL  + L
Sbjct: 169 LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTL 224

Query: 259 YSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKE 318
            +  ++        NL   + +         + P++I ++   +     S  L+ ++   
Sbjct: 225 TNQTITNQPVFYNNNLVVPNVVKGPSGAP--IAPATISDNGTYA-----SPNLTWNLTSF 277

Query: 319 IGNLKCLFDLELSMNNLTG 337
           I N+   F+  ++  N T 
Sbjct: 278 INNVSYTFNQSVTFKNTTV 296

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 50/242 (20%), Positives = 101/242 (41%), Gaps = 20/242 (8%)

Query: 392 KNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDF 451
             L N +++   ++N++  +++A       ++ L                    L  L+ 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLEL 70

Query: 452 SVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPE 511
             N IT  + P + N +K+  L LS N +  K    +  L S+  L L   Q+  +    
Sbjct: 71  KDNQIT-DLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQI--TDVTP 124

Query: 512 IGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELD 571
           +  L+ L++L L  N+++N  P  L  L  + YL++ N + S   P     L  +L+ L 
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLS-KLTTLK 179

Query: 572 LSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF 631
              N +  +I   + ++ +L++++L  NQ+S   P    +   L  + ++   +     F
Sbjct: 180 ADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF 235

Query: 632 SK 633
             
Sbjct: 236 YN 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 51/279 (18%), Positives = 98/279 (35%), Gaps = 43/279 (15%)

Query: 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
            L +   +    + +   +     + + ++ L  +   ++ +I   +  L  L  LEL  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 333 NNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFK 392
           N +T +  + + NL  +  L L  N L      AI  L  + +L L         P    
Sbjct: 73  NQITDL--APLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452
            L+NL  + ++ N ++             +S L                    L  L   
Sbjct: 127 GLSNLQVLYLDLNQIT------------NISPL---------------AGLTNLQYLSIG 159

Query: 453 VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI 512
              ++  + P + N SKL  L    N I   I   L  L +L ++ L  NQ+  S    +
Sbjct: 160 NAQVS-DLTP-LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQI--SDVSPL 213

Query: 513 GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNE 551
              + L ++ L+   ++N       NL+  + +   +  
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.3 bits (201), Expect = 7e-17
 Identities = 53/266 (19%), Positives = 100/266 (37%), Gaps = 24/266 (9%)

Query: 369 NLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLS 428
            L   + +  G +     +     +L  +  +      ++  I    V     L  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELK 71

Query: 429 HNNFHGQIS--SDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPM 486
            N    QI+  +      ++  L+ S N +  ++   I     ++ L+L+S  I    P 
Sbjct: 72  DN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP- 124

Query: 487 ELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLN 546
            L  LS+L  L L+ NQ+  +    +  LT L+ L +   ++S+  P  L NL K+  L 
Sbjct: 125 -LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 547 LSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIP 606
             +N+ S   P     L   L E+ L  N +    P  + N  +L  + L+   ++    
Sbjct: 180 ADDNKISDISP--LASLP-NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234

Query: 607 NCFEDMHGLSSIDISYNRLQGPVPFS 632
               ++   + +         P   S
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 77  FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL 136
            + +    +  L+L + ++  + P  ++ L  LQ L L  N+++  I P +  L+ L  L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYL 156

Query: 137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP 196
           S+ +  ++   P  L NLSK + L   +N +S   P  + +L +L  + L  NQ+    P
Sbjct: 157 SIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
             L N +NL  + L N +++         L   + + 
Sbjct: 213 --LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 10/170 (5%)

Query: 71  NGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQL 130
               D    +   +L  L L  N++  I P  ++ L  LQYL +   ++S  + P +  L
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP-LANL 172

Query: 131 SFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQ 190
           S L+ L    N ++  I   L +L     + L NN +S   P  + N  +L  + L+   
Sbjct: 173 SKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228

Query: 191 LIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240
           +     F+  NL     +     S +   P+T+      ++ N++ N  S
Sbjct: 229 ITNQPVFYNNNLVVPNVVK--GPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (253), Expect = 8e-24
 Identities = 57/208 (27%), Positives = 85/208 (40%), Gaps = 6/208 (2%)

Query: 229 LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRL 287
              + +  N +S    +S    RNL  L+L+SN L+  I       L  L  LDLS N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQ 92

Query: 288 NGVIPSSI-GNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGN 345
              +  +       L  L+L    L   +   +   L  L  L L  N L  +   +  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 346 LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQN 405
           L NL  L+L+ N +S    +A   L  L  LLL  N      P  F++L  L+ + +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 406 NLSGNISEAFVGTYPTLSFLDLSHNNFH 433
           NLS   +EA       L +L L+ N + 
Sbjct: 212 NLSALPTEALAPL-RALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.5 bits (246), Expect = 7e-23
 Identities = 45/207 (21%), Positives = 72/207 (34%), Gaps = 6/207 (2%)

Query: 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSN 478
                + L  N      ++ +     L  L    N +   I        + L+ L+LS N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 479 HIGGKIPME-LGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSL 536
                +       L  L+ L L++  L   L P +   L  L+ L L +N L      + 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 537 GNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNL 596
            +L  + +L L  N  S      F  L   L  L L QN +    P    ++  L+ L L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 597 SYNQLSGFIPNCFEDMHGLSSIDISYN 623
             N LS         +  L  + ++ N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 6/187 (3%)

Query: 443 FPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNK 501
                 +    N I+  +P         L +L L SN +          L+ L +L L+ 
Sbjct: 31  PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 502 NQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQ- 559
           N    S+ P     L  L  L L    L    PG    L  + YL L +N     +P   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDT 148

Query: 560 FEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSID 619
           F  L   L+ L L  N +          + SL +L L  N+++   P+ F D+  L ++ 
Sbjct: 149 FRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 620 ISYNRLQ 626
           +  N L 
Sbjct: 208 LFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.4 bits (238), Expect = 7e-22
 Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 5/215 (2%)

Query: 99  IPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS 158
           +P  I      Q + L  N++S            L+ L L+SN L      +   L+   
Sbjct: 26  VPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 159 LLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSG 217
            L L +N+    + P     L  L TL L    L    P     L  L  L+L +N+L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 218 FIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRS 276
               T   L  L++L +  N +S     +   + +L  L L+ N ++  +      +L  
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGR 202

Query: 277 LSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL 311
           L  L L  N L+ +   ++     L  L L  N  
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.7 bits (231), Expect = 6e-21
 Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 11/209 (5%)

Query: 62  GINLTTTSLN------GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
           GI   +  +         +   SF +  +L  L L +N L  I     + L  L+ LDLS
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 116 ANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQ-SLGNLSKQSLLSLYNNSLSGYIPP 173
            N     + P     L  L  L L    L   +       L+    L L +N+L   +P 
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

Query: 174 -VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNL 232
               +L +L+ L L  N++          L +L  L L  N ++   P     L  L  L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSN 261
            +  N+LS     ++  +R L+ L L  N
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.4 bits (230), Expect = 9e-21
 Identities = 53/220 (24%), Positives = 85/220 (38%), Gaps = 13/220 (5%)

Query: 387 IPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDW-GRFPQ 445
           +P          R+ ++ N +S   + +F      L+ L L  N    +I +        
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVL-ARIDAAAFTGLAL 81

Query: 446 LGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPME-LGRLSSLNKLILNKNQ 503
           L  LD S N    S+ P       +L  L+L    +  ++       L++L  L L  N 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 504 LFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK 562
           L  +LP +    L  L  L L  NR+S+    +   L  +  L L  N  +H  P  F  
Sbjct: 141 L-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 563 LQLQLSELDLSQNFLEGEIPSQI-CNMESLVKLNLSYNQL 601
           L  +L  L L  N L   +P++    + +L  L L+ N  
Sbjct: 200 LG-RLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.4 bits (247), Expect = 9e-22
 Identities = 60/350 (17%), Positives = 118/350 (33%), Gaps = 26/350 (7%)

Query: 253 LRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS 312
           +      S  +    P            +L    +   +       N++  +   ++ + 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 313 GSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVE 372
            S+ + I  L  +  L L+ N LT +    + NL+NL  L+L  N++   +  ++ +L +
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKK 110

Query: 373 LVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF 432
           L SL L  N           +L  L  + +  N ++ +I+   +     L  L L  N  
Sbjct: 111 LKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDN-- 163

Query: 433 HGQIS--SDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGR 490
             QIS         +L  L  S N+I+  +   +     L VL L S     K       
Sbjct: 164 --QISDIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 491 LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
           L   N +      L    P  I    + E  ++  +        S      V     +  
Sbjct: 220 LVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK-AKA 276

Query: 551 EFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQ 600
            F  ++    +++     ++D +    + E  ++I   +   K    +  
Sbjct: 277 RFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKG 326

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 95.6 bits (237), Expect = 1e-20
 Identities = 50/260 (19%), Positives = 101/260 (38%), Gaps = 18/260 (6%)

Query: 77  FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL 136
           F   +F + +  NL    +   +    ++L  +  +  + + +   +   I  L  +++L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 70

Query: 137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP 196
            L  N L   I + L NL     L L  N +       + +L  L +L L  N  I  + 
Sbjct: 71  FLNGNKLT-DI-KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNG-ISDIN 125

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
             L +L  L +L+L NN ++    + L +L  L  L++  N +S      +  +  L++L
Sbjct: 126 -GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL 180

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP 316
           +L  N +S  + + +  L++L  L+L          +   N    + +      L    P
Sbjct: 181 YLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTP 236

Query: 317 KEIGNLKCLFDLELSMNNLT 336
           + I +        +  +   
Sbjct: 237 EIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.8 bits (235), Expect = 2e-20
 Identities = 63/307 (20%), Positives = 117/307 (38%), Gaps = 29/307 (9%)

Query: 109 LQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS 168
           +      +  +  +I P     +   + +L    +  ++ Q+   L+    +   N+ + 
Sbjct: 1   MGETITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 169 GYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKC 228
             +   I  L +++ L L+ N+L    P  L NL NL  L L  N +     S+L  LK 
Sbjct: 57  -SVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKK 110

Query: 229 LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288
           L +L++  N +S    + + ++  L SL+L +N+++      +  L  L  L L  N+++
Sbjct: 111 LKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 166

Query: 289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRN 348
            +    +     L  LYL  N +S  + + +  LK L  LEL          +   NL  
Sbjct: 167 DI--VPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 349 LRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLS 408
              +               G+LV    +    +Y +  +  +    TN V     Q    
Sbjct: 223 PNTVKNT-----------DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271

Query: 409 GNISEAF 415
           G     F
Sbjct: 272 GKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.7 bits (227), Expect = 2e-19
 Identities = 47/245 (19%), Positives = 96/245 (39%), Gaps = 22/245 (8%)

Query: 390 NFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS--DWGRFPQLG 447
                   ++  + + +++  ++        ++  +  +++     I S       P + 
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNS----DIKSVQGIQYLPNVT 68

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
            L  + N +T  I P + N   L  L L  N I   +   L  L  L  L L  N +   
Sbjct: 69  KLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGI-SD 123

Query: 508 LPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQL 567
           +   +  L +LE L L  N++++     L  L K+  L+L +N+ S  +P     L  +L
Sbjct: 124 ING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLT-KL 177

Query: 568 SELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQG 627
             L LS+N +  ++   +  +++L  L L   +      N   ++   +++  +   L  
Sbjct: 178 QNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 628 PVPFS 632
           P   S
Sbjct: 236 PEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.9 bits (212), Expect = 1e-17
 Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 18/251 (7%)

Query: 64  NLTTTSLNGTL--DEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG 121
                +L      D  + +    +  +   N+++  +    I  L  +  L L+ NKL+ 
Sbjct: 22  ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT- 78

Query: 122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL 181
            I P +  L  L  L L  N +   +  SL +L K   LSL +N +S  I   + +L  L
Sbjct: 79  DIKP-LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISD-ING-LVHLPQL 133

Query: 182 STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241
            +L L  N++  +    L  LT L TL L +N +S      L  L  L NL +S NH+S 
Sbjct: 134 ESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS- 188

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301
               ++  ++NL  L L+S E          NL   + +  +   L    P  I +  + 
Sbjct: 189 -DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDY 245

Query: 302 SILYLYSNQLS 312
               +  +   
Sbjct: 246 EKPNVKWHLPE 256

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 92.1 bits (229), Expect = 1e-20
 Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 11/203 (5%)

Query: 109 LQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS 168
              ++     L+  +PP++      + L L  N L      +L   ++ + L+L    L+
Sbjct: 12  HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 169 GYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKC 228
                V G L  L TLDLS NQL  S+P     L  L  L +  N L+      L  L  
Sbjct: 69  --KLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 229 LSNLNMSMNHLSGAIPSSI-GNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINR 286
           L  L +  N L   +P  +      L  L L +N L+  +P  +   L +L  L L  N 
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183

Query: 287 LNGVIPSSIGNSNNLSILYLYSN 309
           L   IP     S+ L   +L+ N
Sbjct: 184 LYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 83.6 bits (207), Expect = 8e-18
 Identities = 52/204 (25%), Positives = 79/204 (38%), Gaps = 12/204 (5%)

Query: 229 LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288
              +N    +L+ A+P  +   ++   L L  N L       +     L+ L+L    L 
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRN 348
            +     G    L  L L  NQL  S+P     L  L  L++S N LT +   ++  L  
Sbjct: 69  KL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 349 LRLLYLYRNELSGSIPQAI-GNLVELVSLLLGFNYFRGPIPKN-FKNLTNLVRVRMNQNN 406
           L+ LYL  NEL  ++P  +     +L  L L  N     +P      L NL  + + +N+
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENS 183

Query: 407 LSGNISEAFVGTYPTLSFLDLSHN 430
           L       F      L F  L  N
Sbjct: 184 LYTIPKGFF--GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 81.3 bits (201), Expect = 6e-17
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 9/184 (4%)

Query: 444 PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503
                ++    N+T ++PP++       +L+LS N +       L   + L +L L++ +
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 504 LFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL 563
           L  +     GTL  L  LDLS N+L  ++P     L  +  L++S N  +         L
Sbjct: 67  L--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 564 QLQLSELDLSQNFLEGEIPSQIC-NMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISY 622
             +L EL L  N L+  +P  +      L KL+L+ N L+         +  L ++ +  
Sbjct: 124 -GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 623 NRLQ 626
           N L 
Sbjct: 182 NSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 55/183 (30%), Positives = 78/183 (42%), Gaps = 9/183 (4%)

Query: 443 FPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNK 501
                 L  S N +  +         ++L  LNL    +  K+    G L  L  L L+ 
Sbjct: 30  PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSH 86

Query: 502 NQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFE 561
           NQL  SLP    TL  L +LD+S NRL++   G+L  L ++  L L  NE     P    
Sbjct: 87  NQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 562 KLQLQLSELDLSQNFLEGEIPSQIC-NMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDI 620
               +L +L L+ N L  E+P+ +   +E+L  L L  N L   IP  F   H L    +
Sbjct: 146 PTP-KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202

Query: 621 SYN 623
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.5 bits (199), Expect = 9e-17
 Identities = 49/181 (27%), Positives = 69/181 (38%), Gaps = 6/181 (3%)

Query: 82  FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSN 141
             D   L+L  N L+      +    +L  L+L   +L+       G L  L  L L  N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHN 87

Query: 142 CLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQLIGSVPFFLG 200
            L  S+P     L   ++L +  N L+  +P   +  L  L  L L  N+L    P  L 
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 201 NLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYS 260
               L  L L NN+L+      L  L+ L  L +  N L   IP        L   FL+ 
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 261 N 261
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 17/213 (7%)

Query: 391 FKNLTNLVRVRMNQNNLS---GNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447
              + + + V  ++ NL+    ++           + L LS N  +    +    + +L 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP-------KDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
            L+     +T  +  + G    L  L+LS N +   +P+    L +L  L ++ N+L  S
Sbjct: 59  QLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRL-TS 114

Query: 508 LPPEIGT-LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQ 566
           LP      L EL+ L L  N L    PG L    K+  L+L+NN  +         L+  
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE-N 173

Query: 567 LSELDLSQNFLEGEIPSQICNMESLVKLNLSYN 599
           L  L L +N L   IP        L    L  N
Sbjct: 174 LDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 54/187 (28%), Positives = 71/187 (37%), Gaps = 20/187 (10%)

Query: 62  GINLTTTSLN------GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
            +   TT L+       T    +   +  L  LNL   EL  +       L  L  LDLS
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLS 85

Query: 116 ANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIP----QSLGNLSKQSLLSLYNNSLSGYI 171
            N+L   +P     L  L+ L +  N L  S+P    + LG L +   L L  N L   +
Sbjct: 86  HNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQE---LYLKGNELK-TL 139

Query: 172 PP-VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
           PP ++     L  L L+ N L       L  L NL TL L  NSL   IP        L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLP 198

Query: 231 NLNMSMN 237
              +  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 491 LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
           ++S  ++  +K  L  +LPP++    +  +L LSEN L      +L    ++  LNL   
Sbjct: 9   VASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 551 EFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFE 610
           E +  +      L   L  LDLS N L+  +P     + +L  L++S+N+L+        
Sbjct: 66  ELTK-LQV-DGTLP-VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 611 DMHGLSSIDISYNRLQ 626
            +  L  + +  N L+
Sbjct: 122 GLGELQELYLKGNELK 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 58/211 (27%), Positives = 87/211 (41%), Gaps = 11/211 (5%)

Query: 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSN 478
            +   LDLS N      S  +  FP+L  LD S   I  +I      + S L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 479 HIGGKIPMEL-GRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSN-AIPGS 535
            I   + +     LSSL KL+  +  L  SL     G L  L+ L+++ N + +  +P  
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 536 LGNLLKVHYLNLSNNEF---SHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLV 592
             NL  + +L+LS+N+             ++ L    LDLS N +   I         L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 593 KLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
           +L L  NQL       F+ +  L  I +  N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 52/241 (21%), Positives = 87/241 (36%), Gaps = 31/241 (12%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301
            IP ++    + ++L L  N L         +   L  LDLS   +  +   +  + ++L
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 302 SILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS 360
           S L L  N +  S+       L  L  L     NL  +    IG+L+ L+ L +  N + 
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 361 GSIPQ--AIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGT 418
            S        NL  L  L L  N  +     + + L  +  + ++               
Sbjct: 138 -SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS--------------- 181

Query: 419 YPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSS 477
                 LDLS N  +  I     +  +L  L    N +  S+P  I    + LQ + L +
Sbjct: 182 ------LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 233

Query: 478 N 478
           N
Sbjct: 234 N 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.9 bits (216), Expect = 5e-19
 Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 12/206 (5%)

Query: 160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP--FFLGNLTNLVTLHLFNNSLSG 217
           L L  N L         +   L  LDLS  + I ++    +   L++L TL L  N +  
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQS-LSHLSTLILTGNPIQS 90

Query: 218 FIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKE--IGNLR 275
                   L  L  L     +L+      IG+++ L+ L +  N +  S        NL 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLT 149

Query: 276 SLSNLDLSINRLNGVIPSSIGNSNNLSI----LYLYSNQLSGSIPKEIGNLKCLFDLELS 331
           +L +LDLS N++  +  + +   + + +    L L  N ++  I         L +L L 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALD 208

Query: 332 MNNLTGVIPSSIGNLRNLRLLYLYRN 357
            N L  V       L +L+ ++L+ N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.2 bits (214), Expect = 8e-19
 Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 17/221 (7%)

Query: 78  SFSSFP-----DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLS 131
           +F   P         L+L  N L  +         +LQ LDLS  ++   I       LS
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS 76

Query: 132 FLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL 191
            LS L L  N +      +   LS    L     +L+      IG+L +L  L+++ N  
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL- 135

Query: 192 IGSVPF--FLGNLTNLVTLHLFNN---SLSGFIPSTLGKLKCLS-NLNMSMNHLSGAIPS 245
           I S     +  NLTNL  L L +N   S+       L ++  L+ +L++S+N ++  I  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 246 SIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSIN 285
                  L+ L L +N+L  S+P  I   L SL  + L  N
Sbjct: 195 GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 55/230 (23%), Positives = 87/230 (37%), Gaps = 35/230 (15%)

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIP-QAIGNLVELVSLLLGFNYFRGP 386
           L+LS N L  +   S  +   L++L L R E+  +I   A  +L  L +L+L  N  +  
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 387 IPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS--DWGRF- 443
               F  L++L ++   + NL+   +        TL  L+++HN     I S      F 
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHN----LIQSFKLPEYFS 146

Query: 444 --PQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILN 500
               L  LD S N I  SI         ++ +LNL                     L L+
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL--------------------SLDLS 185

Query: 501 KNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
            N +   + P       L+ L L  N+L +   G    L  +  + L  N
Sbjct: 186 LNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 10/174 (5%)

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTE 517
            IP  +      + L+LS N +             L  L L++ ++  ++      +L+ 
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSH 77

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFL 577
           L  L L+ N + +   G+   L  +  L       +         L+  L EL+++ N +
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLI 136

Query: 578 -EGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGL----SSIDISYNRLQ 626
              ++P    N+ +L  L+LS N++          +H +     S+D+S N + 
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 12/160 (7%)

Query: 64  NLTTTSLNG----TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL 119
           +L+T  L G    +L   +FS    L  L      L  +    I  L  L+ L+++ N +
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 120 SGKIPPEI-GQLSFLSELSLYSNCLNGSIP----QSLGNLSKQSL-LSLYNNSLSGYIPP 173
                PE    L+ L  L L SN +  SI     + L  +   +L L L  N ++ +I P
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNN 213
                I L  L L  NQL          LT+L  + L  N
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 43/190 (22%), Positives = 67/190 (35%), Gaps = 24/190 (12%)

Query: 64  NLTTTSLNG----TLDEFSFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANK 118
            L    L+     T+++ ++ S   L  L L  N +   +     S L  LQ L      
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETN 111

Query: 119 LSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQ-----SLGNLSKQSLLSLYNNSLSGYIP 172
           L+  +     G L  L EL++  N +  S        +L NL     L L +N +   I 
Sbjct: 112 LA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEH---LDLSSNKIQ-SIY 165

Query: 173 P-VIGNLISL----STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLK 227
              +  L  +     +LDLSLN  +  +         L  L L  N L         +L 
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 228 CLSNLNMSMN 237
            L  + +  N
Sbjct: 225 SLQKIWLHTN 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 67/289 (23%), Positives = 105/289 (36%), Gaps = 22/289 (7%)

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387
                + +T  IPS +   RN   L     +L      A     +L  + +  N     I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 388 PKN-FKNLTNLVRVRM-NQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQ 445
             + F NL  L  +R+   NNL     EAF    P L +L +S+               Q
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 446 LGTLDFSVNNITGSIPPEI--GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503
              LD   N    +I      G S +  +L L+ N I  +I       + L++L L+ N 
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188

Query: 504 LFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK 562
               LP ++    +   +LD+S  R+ +     L NL K+   +  N +   K+PT  EK
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT-LEK 244

Query: 563 LQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFED 611
           L   L E  L+        PS  C   +  +     + +        E 
Sbjct: 245 LV-ALMEASLT-------YPSHCCAFANWRRQISELHPICNKSILRQEV 285

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 7/189 (3%)

Query: 443 FPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPME-LGRLSSLNKLILN 500
                 L F +  +   I          L+ + +S N +   I  +    L  L+++ + 
Sbjct: 29  PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 501 KNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQ 559
           K      + PE    L  L+ L +S   + +       + L+   L++ +N   H I   
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 560 -FEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLS-YNQLSGFIPNCFEDMHGLSS 617
            F  L  +   L L++N ++ EI +   N   L +LNLS  N L     + F    G   
Sbjct: 148 SFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 618 IDISYNRLQ 626
           +DIS  R+ 
Sbjct: 207 LDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 40/256 (15%), Positives = 73/256 (28%), Gaps = 14/256 (5%)

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239
           S        +++   +P  L    N + L      L             L  + +S N +
Sbjct: 10  SNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 240 SGAIPSSI-GNVRNLRSLFL-YSNELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIG 296
              I + +  N+  L  + +  +N L   I  E   NL +L  L +S   +  +      
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125

Query: 297 NSNNLSILYLYSNQLSGSIPKEI--GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYL 354
           +S    +L +  N    +I +    G       L L+ N +  +  S+    +   L   
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 355 YRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEA 414
             N L              V L +             +NL  L             +   
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE-- 243

Query: 415 FVGTYPTLSFLDLSHN 430
                  L    L++ 
Sbjct: 244 ---KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 39/211 (18%), Positives = 72/211 (34%), Gaps = 8/211 (3%)

Query: 82  FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSL-Y 139
             + + L     +L  I     S    L+ +++S N +   I  ++   L  L E+ +  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 140 SNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVI-GNLISLSTLDLSLNQLIGSVPF- 197
           +N L    P++  NL     L + N  +  ++P V   + +    LD+  N  I ++   
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 198 -FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
            F+G     V L L  N +     S     +         N+L                L
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 257 FLYSNELSGSIPKEI-GNLRSLSNLDLSINR 286
            +    +  S+P     NL+ L        +
Sbjct: 208 DISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 16/222 (7%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLS-ANKLSGKIPPEI-GQ 129
            + + +FS F DL  + +  N++  +I   + S L KL  + +  AN L   I PE    
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQN 102

Query: 130 LSFLSELSLYSNCLNGSIPQ-SLGNLSKQSLLSLYNNSLSGYIPPVI--GNLISLSTLDL 186
           L  L  L + +  +   +P     +  ++ LL + +N     I      G       L L
Sbjct: 103 LPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161

Query: 187 SLNQLIGSVPFFLGNLTNLVTLHL-FNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPS 245
           + N  I  +     N T L  L+L  NN+L                L++S   +  ++PS
Sbjct: 162 NKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS 219

Query: 246 SI-GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINR 286
               N++ LR+   Y+ +    +P  +  L +L    L+   
Sbjct: 220 YGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552
           S    +  ++++   +P ++        L     +L     G+      +  + +S N+ 
Sbjct: 10  SNRVFLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 553 SHKIPTQ-FEKLQLQLSELDLSQNFLEGEIPSQIC-NMESLVKLNLSYNQLSGFIPNCFE 610
              I    F  L  +L E+ + +      I  +   N+ +L  L +S   +         
Sbjct: 67  LEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125

Query: 611 DMHGLSSIDISYN 623
                  +DI  N
Sbjct: 126 HSLQKVLLDIQDN 138

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 10/181 (5%)

Query: 201 NLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYS 260
                +   L  +S +    + +  L  ++  N+++  L+G     I    N++ L + +
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINN 75

Query: 261 NELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG 320
              +   P  I  L +L  L +    +      ++    +L++L +  +    SI  +I 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGF 380
            L  +  ++LS N     I   +  L  L+ L +  + +       I +  +L  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 381 N 381
            
Sbjct: 191 Q 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.5 bits (202), Expect = 8e-18
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 9/187 (4%)

Query: 81  SFPDLLFLNLFNNEL--FGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSL 138
           + PD  F    N  L          +Q+  L Y+ L+   ++  +   I     + +L++
Sbjct: 16  NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTI 73

Query: 139 YSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFF 198
            +       P  +  LS    L +    ++    P +  L SL+ LD+S +    S+   
Sbjct: 74  NNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 199 LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFL 258
           +  L  + ++ L  N     I   L  L  L +LN+  + +       I +   L  L+ 
Sbjct: 132 INTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYA 188

Query: 259 YSNELSG 265
           +S  + G
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 7/164 (4%)

Query: 150 SLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLH 209
           +   ++  + ++L N +++      I    ++  L ++        P  +  L+NL  L 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLR 94

Query: 210 LFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
           +    ++      L  L  L+ L++S +    +I + I  +  + S+ L  N     I  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M 153

Query: 270 EIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG 313
            +  L  L +L++  + ++      I +   L+ LY +S  + G
Sbjct: 154 PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 10/184 (5%)

Query: 226 LKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSIN 285
            K   N  +  +  +     +   + +L  + L +  ++  +   I    ++ +L ++  
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNI 76

Query: 286 RLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGN 345
                  + I   +NL  L +    ++      +  L  L  L++S +     I + I  
Sbjct: 77  HATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 346 LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQN 405
           L  +  + L  N     I   +  L EL SL + F+          ++   L ++     
Sbjct: 135 LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

Query: 406 NLSG 409
            + G
Sbjct: 192 TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 7/164 (4%)

Query: 78  SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELS 137
           + +    L ++ L N  +  +    I     ++ L ++    +    P I  LS L  L 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLR 94

Query: 138 LYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPF 197
           +    +      +L  L+  +LL + +++    I   I  L  ++++DLS N  I  +  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM- 153

Query: 198 FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241
            L  L  L +L++  + +  +    +     L+ L      + G
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.8 bits (187), Expect = 7e-16
 Identities = 31/188 (16%), Positives = 67/188 (35%), Gaps = 15/188 (7%)

Query: 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
             ++  N  L  +    +  + +   N+L+ + L +  ++  +   I     + DL ++ 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75

Query: 333 NNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFK 392
            + T    + I  L NL  L +   +++      +  L  L  L +  +     I     
Sbjct: 76  IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQIS--SDWGRFPQLGTLD 450
            L  +  + ++ N    +I    + T P L  L++  +     +        FP+L  L 
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFD----GVHDYRGIEDFPKLNQLY 187

Query: 451 FSVNNITG 458
                I G
Sbjct: 188 AFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 8/161 (4%)

Query: 443 FPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKN 502
              L  +  +  N+T  +   I  +  ++ L +++ H     P  +  LS+L +L +   
Sbjct: 43  MNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 503 QLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK 562
            +     P +  LT L LLD+S +   ++I   +  L KV+ ++LS N     I    + 
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKT 157

Query: 563 LQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSG 603
           L  +L  L++  + +       I +   L +L      + G
Sbjct: 158 LP-ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 30/184 (16%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 444 PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503
                    +   + +        + L  + L++ ++     +E     ++  L +N   
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEY--AHNIKDLTINNIH 77

Query: 504 LFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL 563
              +  P I  L+ LE L +    +++    +L  L  +  L++S++     I T+   L
Sbjct: 78  A-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 564 QLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
             +++ +DLS N    +I   +  +  L  LN+ ++ +  +     ED   L+ +     
Sbjct: 136 P-KVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

Query: 624 RLQG 627
            + G
Sbjct: 192 TIGG 195

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 64/337 (18%), Positives = 100/337 (29%), Gaps = 44/337 (13%)

Query: 54  CNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLD 113
           CN  +     +     L     E           L   + E        I +   L+ L 
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLT 74

Query: 114 LSANKLSGKIPPEIGQL---SFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGY 170
           + A ++  +I     ++   S L EL+L +  + G+ P  L   +   L  L   ++S  
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-- 132

Query: 171 IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
                      +T D  L +L             L  L +       F    +     LS
Sbjct: 133 ----------WATRDAWLAEL------QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
            L++S N   G                      S   P +   L+ L+  +  +   +GV
Sbjct: 177 TLDLSDNPELGERGLI-----------------SALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNL 349
             +       L  L L  N L  +           L  L LS   L  V     G    L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKL 276

Query: 350 RLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGP 386
            +L L  N L    P     L ++ +L L  N F   
Sbjct: 277 SVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 3e-16
 Identities = 47/277 (16%), Positives = 90/277 (32%), Gaps = 21/277 (7%)

Query: 368 GNLVELVSLLLGFNYFRGPIP-KNFKNLTNLVRVRMNQNNLSGNISEAF--VGTYPTLSF 424
           G    L  LL   +         +     +L R+ +    +   I      V     L  
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 425 LDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS------SKLQVLNLSSN 478
           L L +    G                 ++ N++ +                L+VL+++  
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 479 HIGGKIPMELGRLSSLNKLILNKNQLFGSL-------PPEIGTLTELELLDLSENRLSNA 531
           H       ++    +L+ L L+ N   G         P +  TL  L L +      S  
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 532 IPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESL 591
                   +++  L+LS+N               QL+ L+LS   L+ ++P  +     L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKL 276

Query: 592 VKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGP 628
             L+LSYN+L        +++  + ++ +  N     
Sbjct: 277 SVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 9e-12
 Identities = 43/186 (23%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 461 PPEIGNSSKLQVLNLSSNHIGGKIPMELGRL---SSLNKLILNKNQLFGSLPPEIGTLTE 517
             +I  S  L+ L + +  I  +I     R+   S L +L L   ++ G+ PP +   T 
Sbjct: 61  FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120

Query: 518 LELLDLSENRLSN----AIPGSLGNLLKVH--YLNLSNNEFSHKIPTQFEKLQLQLSELD 571
            +L  L+   +S     A    L   LK     L+++     +    Q       LS LD
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP-ALSTLD 179

Query: 572 LSQNFLEGEI-------PSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNR 624
           LS N   GE        P +   ++ L   N      SG           L  +D+S+N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 625 LQGPVP 630
           L+    
Sbjct: 240 LRDAAG 245

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.6 bits (139), Expect = 5e-09
 Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 451 FSVNNITGSIPPEI--GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSL 508
            S  N  G+   E+  G  S   +L             ++ +  SL +L +   ++   +
Sbjct: 25  SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRI 84

Query: 509 PP---EIGTLTELELLDLSENRLSNAIPGSLGNL--LKVHYLNLSNNEFSH---KIPTQF 560
                 +  ++ L+ L L    ++   P  L       ++ LNL N  ++     +    
Sbjct: 85  LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144

Query: 561 EKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIP----NCFEDMHGLS 616
           + L+  L  L ++Q         Q+    +L  L+LS N   G        C      L 
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 617 SIDISYNRLQ 626
            + +    ++
Sbjct: 205 VLALRNAGME 214

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 83.4 bits (206), Expect = 3e-17
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 13/170 (7%)

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPME--LGRLSSLNKLILNKNQLFGSLPPEI-GTL 515
           ++P  +   S   +L+LS N++  ++  E    RL++L+ L+L+ N L   +  E    +
Sbjct: 32  NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPV 87

Query: 516 TELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQN 575
             L  LDLS N L         +L  +  L L NN         FE +  QL +L LSQN
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQN 146

Query: 576 FLEGEIPSQI----CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDIS 621
            +    P ++      +  L+ L+LS N+L        + +       + 
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 32/192 (16%)

Query: 99  IPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS 158
           +P  +        LDLS N LS ++  E                       +   L+   
Sbjct: 33  VPQSLPSY--TALLDLSHNNLS-RLRAE----------------------WTPTRLTNLH 67

Query: 159 LLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSG 217
            L L +N L+ +I       + +L  LDLS N L     F   +L  L  L L+NN +  
Sbjct: 68  SLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126

Query: 218 FIPSTLGKLKCLSNLNMSMNHLSGAIP----SSIGNVRNLRSLFLYSNELSGSIPKEIGN 273
              +    +  L  L +S N +S   P         +  L  L L SN+L      ++  
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

Query: 274 LRSLSNLDLSIN 285
           L +     L ++
Sbjct: 186 LPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 15/176 (8%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEI--GNLRSLSNLDLSINRLNGVIPSSIGNSN 299
            +P S+        L L  N LS  +  E     L +L +L LS N LN +   +     
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 300 NLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNE 358
           NL  L L SN L  ++ + +  +L+ L  L L  N++  V  ++  ++  L+ LYL +N+
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 359 LSGSIP----QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGN 410
           +S   P    +    L +L+ L L  N  +     + + L   V+  +    L  N
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL---YLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 13/149 (8%)

Query: 76  EFSFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANKLSGKIPPEI-GQLSFL 133
           E++ +   +L  L L +N L   I  +    +  L+YLDLS+N L   +   +   L  L
Sbjct: 57  EWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQAL 114

Query: 134 SELSLYSNCLNGSIPQ-SLGNLSKQSLLSLYNNSLSGYIPP----VIGNLISLSTLDLSL 188
             L LY+N +   + + +  ++++   L L  N +S   P         L  L  LDLS 
Sbjct: 115 EVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS 172

Query: 189 NQLIGSVPFFLGNLTNLV--TLHLFNNSL 215
           N+L       L  L   V   L+L NN L
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 9e-12
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 516 TELELLDLSENRLSNAIPG-SLGNLLKVHYLNLSNNEFSHKIPTQ-FEKLQLQLSELDLS 573
           +   LLDLS N LS      +   L  +H L LS+N  +  I ++ F  +   L  LDLS
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP-NLRYLDLS 96

Query: 574 QNFLEGEIPSQIC-NMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
            N L   +   +  ++++L  L L  N +     N FEDM  L  + +S N++ 
Sbjct: 97  SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 13/136 (9%)

Query: 64  NLTTTSLNG----TLDEFSFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANK 118
           NL +  L+      +   +F   P+L +L+L +N L   +   + S L  L+ L L  N 
Sbjct: 65  NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNH 123

Query: 119 LSGKIPPEI-GQLSFLSELSLYSNCLNGSIP----QSLGNLSKQSLLSLYNNSLSGYIPP 173
           +   +       ++ L +L L  N ++   P    +    L K  LL L +N L      
Sbjct: 124 IV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 174 VIGNLISLSTLDLSLN 189
            +  L +     L L+
Sbjct: 182 DLQKLPAWVKNGLYLH 197

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 51/260 (19%), Positives = 101/260 (38%), Gaps = 18/260 (6%)

Query: 77  FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL 136
           FS  +F + +  NL    +   +    ++L  +  +  + + +   +   I  L  +++L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 73

Query: 137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP 196
            L  N L   I   L NL     L L  N +       + +L  L +L L  N +  S  
Sbjct: 74  FLNGNKLT-DIK-PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI--SDI 127

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
             L +L  L +L+L NN ++    + L +L  L  L++  N +S      +  +  L++L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL 183

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP 316
           +L  N +S  + + +  L++L  L+L          +   N    + +      L    P
Sbjct: 184 YLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--P 239

Query: 317 KEIGNLKCLFDLELSMNNLT 336
           + I +        +  +   
Sbjct: 240 EIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.9 bits (200), Expect = 8e-17
 Identities = 61/316 (19%), Positives = 114/316 (36%), Gaps = 51/316 (16%)

Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162
                +    +L    ++  +     +L+ + ++   ++ +                   
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI------------------- 58

Query: 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
              S+ G     I  L +++ L L+ N+L  +    L NL NL  L L  N +     S+
Sbjct: 59  --KSVQG-----IQYLPNVTKLFLNGNKL--TDIKPLANLKNLGWLFLDENKVKDL--SS 107

Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDL 282
           L  LK L +L++  N +S    + + ++  L SL+L +N+++      +  L  L  L L
Sbjct: 108 LKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSL 163

Query: 283 SINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSS 342
             N+++ +    +     L  LYL  N +S  + + +  LK L  LEL          + 
Sbjct: 164 EDNQISDI--VPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINH 219

Query: 343 IGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRM 402
             NL     +               G+LV    +    +Y +  +  +    TN V    
Sbjct: 220 QSNLVVPNTVK-----------NTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIF 268

Query: 403 NQNNLSGNISEAFVGT 418
            Q    G     F G 
Sbjct: 269 YQPVTIGKAKARFHGR 284

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 51/259 (19%), Positives = 93/259 (35%), Gaps = 23/259 (8%)

Query: 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
                   +L    +   +       N++  +   ++ +  S+ + I  L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 333 NNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFK 392
           N LT +    + NL+NL  L+L  N++   +  ++ +L +L SL L  N           
Sbjct: 78  NKLTDI--KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS--DINGLV 131

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQIS--SDWGRFPQLGTLD 450
           +L  L  + +  N ++ +I+   +     L  L L  N    QIS         +L  L 
Sbjct: 132 HLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNLY 184

Query: 451 FSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPP 510
            S N+I+  +   +     L VL L S     K       L   N +      L    P 
Sbjct: 185 LSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPE 240

Query: 511 EIGTLTELELLDLSENRLS 529
            I    + E  ++  +   
Sbjct: 241 IISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 47/245 (19%), Positives = 95/245 (38%), Gaps = 22/245 (8%)

Query: 390 NFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS--DWGRFPQLG 447
           +       ++  + + +++            ++  +  +++     I S       P + 
Sbjct: 19  SDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVT 71

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
            L  + N +T  I P + N   L  L L  N +   +   L  L  L  L L  N +  S
Sbjct: 72  KLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGI--S 125

Query: 508 LPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQL 567
               +  L +LE L L  N++++     L  L K+  L+L +N+ S  +P     L  +L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLT-KL 180

Query: 568 SELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQG 627
             L LS+N +  ++   +  +++L  L L   +      N   ++   +++  +   L  
Sbjct: 181 QNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 628 PVPFS 632
           P   S
Sbjct: 239 PEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 64/269 (23%), Positives = 110/269 (40%), Gaps = 21/269 (7%)

Query: 69  SLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIG 128
                 D  + +    +  +   N+++  +    I  L  +  L L+ NKL+  I P + 
Sbjct: 32  KKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT-DIKP-LA 87

Query: 129 QLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSL 188
            L  L  L L  N +   +  SL +L K   LSL +N +S  I   + +L  L +L L  
Sbjct: 88  NLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGN 143

Query: 189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248
           N++  +    L  LT L TL L +N +S  +P  L  L  L NL +S NH+S     ++ 
Sbjct: 144 NKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALA 197

Query: 249 NVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYS 308
            ++NL  L L+S E          NL   + +  +   L  V P  I +  +        
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYE-----K 250

Query: 309 NQLSGSIPKEIGNLKCLFDLELSMNNLTG 337
             +   +P+    +  +F   +++     
Sbjct: 251 PNVKWHLPEFTNEVSFIFYQPVTIGKAKA 279

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 17/236 (7%)

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
           F        +  +L   S++     T  +L  +  +  + + +       I  + N+  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKL 73

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP 316
           FL  N+L+  I K + NL++L  L L  N++  +  SS+ +   L  L L  N +S  I 
Sbjct: 74  FLNGNKLT-DI-KPLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGIS-DIN 128

Query: 317 KEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSL 376
             + +L  L  L L  N +T +  + +  L  L  L L  N++S  I   +  L +L +L
Sbjct: 129 -GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 183

Query: 377 LLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF 432
            L  N+      +    L NL  + +       N            + +  +  + 
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 21/234 (8%)

Query: 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGF 380
                    L   ++T  +      L ++  +    +++  S+ Q I  L  +  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 381 NYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQIS--S 438
           N       K   NL NL  + +++N +  ++S   +     L  L L HN     IS  +
Sbjct: 78  NKLTDI--KPLANLKNLGWLFLDENKVK-DLS--SLKDLKKLKSLSLEHN----GISDIN 128

Query: 439 DWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLI 498
                PQL +L    N IT  I   +   +KL  L+L  N I   I   L  L+ L  L 
Sbjct: 129 GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLY 184

Query: 499 LNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552
           L+KN +  S    +  L  L++L+L      N       NL+  + +  ++   
Sbjct: 185 LSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 14/200 (7%)

Query: 64  NLTTTSLNGTL--DEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG 121
           N+T   LNG    D    ++  +L +L L  N++  +    +  L KL+ L L  N +S 
Sbjct: 69  NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS- 125

Query: 122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL 181
            I   +  L  L  L L +N +  +    L  L+K   LSL +N +S  I P +  L  L
Sbjct: 126 DING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKL 180

Query: 182 STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241
             L LS N +       L  L NL  L LF+        +    L   + +  +   L  
Sbjct: 181 QNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 242 AIPSSIGNVRNLRSLFLYSN 261
             P  I +  +     +  +
Sbjct: 239 --PEIISDDGDYEKPNVKWH 256

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.6 bits (197), Expect = 9e-16
 Identities = 76/409 (18%), Positives = 139/409 (33%), Gaps = 57/409 (13%)

Query: 251 RNLRSLFLYSNELSGSIPKEIG-NLRSLSNLDLSINRLN----GVIPSSIGNSNNLSILY 305
            +++SL +   ELS +   E+   L+    + L    L       I S++  +  L+ L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 306 LYSNQLSGSIPKEIGN-LKC----LFDLELSMNNLT----GVIPSSIGNLRNLRLLYLYR 356
           L SN+L       +   L+     +  L L    LT    GV+ S++  L  L+ L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 357 NELSGSIPQAIGNLVE-----LVSLLLGFNYFR----GPIPKNFKNLTNLVRVRMNQNNL 407
           N L  +  Q +   +      L  L L +         P+    +   +   + ++ N++
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 408 SG----NISEAFVGTYPTLSFLDLSHNNFHGQ----ISSDWGRFPQLGTLDFSVNNITGS 459
           +      + +    +   L  L L            +         L  L    N +   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 460 -----IPPEIGNSSKLQVLNLSSNHIGGK----IPMELGRLSSLNKLILNKNQLFGSLPP 510
                 P  +  SS+L+ L +    I  K    +   L    SL +L L  N+L      
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 511 EIG-----TLTELELLDLSENRLSNAIPGSLGNLLKVH----YLNLSNNEFSHK----IP 557
            +         +LE L +     + A      ++L  +     L +SNN         + 
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 558 TQFEKLQLQLSELDLSQNFLEGE----IPSQICNMESLVKLNLSYNQLS 602
               +    L  L L+   +       + + +    SL +L+LS N L 
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 76/450 (16%), Positives = 143/450 (31%), Gaps = 69/450 (15%)

Query: 160 LSLYNNSLSGY-IPPVIGNLISLSTLDLSLNQL----IGSVPFFLGNLTNLVTLHLFNNS 214
           L +    LS      ++  L     + L    L       +   L     L  L+L +N 
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 215 LSG----FIPSTLGKLKC-LSNLNMSMNHLS----GAIPSSIGNVRNLRSLFLYSNELSG 265
           L       +   L    C +  L++    L+    G + S++  +  L+ L L  N L  
Sbjct: 68  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127

Query: 266 SIPKEIGNLR-----SLSNLDLSINRLN----GVIPSSIGNSNNLSILYLYSNQLSGSIP 316
           +  + +          L  L L    L+      + S +    +   L + +N ++ +  
Sbjct: 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187

Query: 317 KEIG-----NLKCLFDLELSMNNLT----GVIPSSIGNLRNLRLLYLYRNELSGSIPQAI 367
           + +      +   L  L+L    +T      +   + +  +LR L L  N+L       +
Sbjct: 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247

Query: 368 GNLVE-----LVSLLLGFNYFRGP----IPKNFKNLTNLVRVRMNQNNLSG----NISEA 414
              +      L +L +            + +  +   +L  + +  N L       + E 
Sbjct: 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307

Query: 415 FVGTYPTLSFLDLSHNNFHGQ----ISSDWGRFPQLGTLDFSVNNITGSIPPEIG----- 465
            +     L  L +   +F        SS   +   L  L  S N +  +   E+      
Sbjct: 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367

Query: 466 NSSKLQVLNLSSNHIGGK----IPMELGRLSSLNKLILNKNQ--------LFGSLPPEIG 513
             S L+VL L+   +       +   L    SL +L L+ N         L  S+     
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 427

Query: 514 TLTELELLDLSENRLSNAIPGSLGNLLKVH 543
            L +   L L +   S  +   L  L K  
Sbjct: 428 LLEQ---LVLYDIYWSEEMEDRLQALEKDK 454

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.9 bits (190), Expect = 7e-15
 Identities = 78/478 (16%), Positives = 141/478 (29%), Gaps = 96/478 (20%)

Query: 180 SLSTLDLSLNQLI-GSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH 238
            + +LD+   +L        L  L     + L +  L+                      
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT----------------EARCKD 47

Query: 239 LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNL-----RSLSNLDLSINRLN----G 289
           +S A+  +      L  L L SNEL       +          +  L L    L     G
Sbjct: 48  ISSALRVN----PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103

Query: 290 VIPSSIGNSNNLSILYLYSNQLSGSIPKEIG-----NLKCLFDLELSMNNLT----GVIP 340
           V+ S++     L  L+L  N L  +  + +          L  L+L   +L+      + 
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 341 SSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRV 400
           S +    + + L +  N+++ +  + +   ++                    +   L  +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLK-------------------DSPCQLEAL 204

Query: 401 RMNQNNLS----GNISEAFVGTYPTLSFLDLSHNNFHGQ-----ISSDWGRFPQLGTLDF 451
           ++    ++     ++      +  +L  L L  N                   +L TL  
Sbjct: 205 KLESCGVTSDNCRDLCGIV-ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 452 SVNNIT----GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRL-----SSLNKLILNKN 502
               IT    G +   +     L+ L+L+ N +G +    L          L  L +   
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 503 QL----FGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKV-----HYLNLSNNEFS 553
                        +     L  L +S NRL +A    L   L         L L++ + S
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 554 HK----IPTQFEKLQLQLSELDLSQNFLEGEIPSQIC-----NMESLVKLNLSYNQLS 602
                 +          L ELDLS N L      Q+          L +L L     S
Sbjct: 384 DSSCSSLAATLLANH-SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 80/480 (16%), Positives = 151/480 (31%), Gaps = 95/480 (19%)

Query: 84  DLLFLNLFNNELFGIIPPQISQLFK----LQYLDLSANKLSGK----IPPEIGQLSFLSE 135
           D+  L++   E   +   + ++L       Q + L    L+      I   +     L+E
Sbjct: 4   DIQSLDIQCEE---LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 136 LSLYSNCLNGSIPQSLGNLSKQSL-----LSLYNNSLS----GYIPPVIGNLISLSTLDL 186
           L+L SN L       +    +        LSL N  L+    G +   +  L +L  L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 187 SLNQLIGS-----VPFFLGNLTNLVTLHLFNNSLS----GFIPSTLGKLKCLSNLNMSMN 237
           S N L  +         L     L  L L   SLS      + S L        L +S N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 238 HLSGAIPSSIG-----NVRNLRSLFLYSNELS----GSIPKEIGNLRSLSNLDLSINRL- 287
            ++ A    +      +   L +L L S  ++      +   + +  SL  L L  N+L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 288 ----NGVIPSSIGNSNNLSILYLYSNQLS----GSIPKEIGNLKCLFDLELSMNNLTGVI 339
                 + P  +  S+ L  L+++   ++    G + + +   + L +L L+ N L    
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 340 PSSIGNL-----RNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNL 394
              +          L  L++     + +      +++                    + L
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL-----------------AQNRFL 343

Query: 395 TNLVRVRMNQNNLSGN---------ISEAFVGTYPTLSFLDLSHNNFHGQ----ISSDWG 441
             L         +S N         + +        L  L L+  +        +++   
Sbjct: 344 LEL--------QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395

Query: 442 RFPQLGTLDFSVNNITGSIPPEIG-----NSSKLQVLNLSSNHIGGKIPMELGRLSSLNK 496
               L  LD S N +  +   ++          L+ L L   +   ++   L  L     
Sbjct: 396 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP 455

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 35/183 (19%), Positives = 57/183 (31%), Gaps = 24/183 (13%)

Query: 467 SSKLQVLNLSSNHIGGKIPMELGR-LSSLNKLILNKNQL----FGSLPPEIGTLTELELL 521
           S  +Q L++    +      EL   L     + L+   L       +   +     L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 522 DLSENRLSNAIPGSLGNLLKV-----HYLNLSNNEFSHK----IPTQFEKLQLQLSELDL 572
           +L  N L +     +   L+        L+L N   +      + +    L   L EL L
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHL 120

Query: 573 SQNFLEGEIPSQICNME-----SLVKLNLSYNQLS----GFIPNCFEDMHGLSSIDISYN 623
           S N L       +C         L KL L Y  LS      + +          + +S N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 624 RLQ 626
            + 
Sbjct: 181 DIN 183

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 27/226 (11%)

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIP-QAIGNLVELVSLLLGFNYFRGP 386
           L+L   +L  +   +  NL N+  +Y+  +     +   +  NL ++  + +        
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 387 IPKN-FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQ 445
           I  +  K L  L  + +    L        V +      L+++ N +   I      F  
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV--NAFQG 153

Query: 446 LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF 505
           L                     ++   L L +N     +       + L+ + LNKN+  
Sbjct: 154 L--------------------CNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYL 192

Query: 506 GSLPPEI--GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSN 549
             +  +   G  +   LLD+S+  ++      L +L ++   N   
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 11/191 (5%)

Query: 444 PQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILNK 501
           P   TL     ++  +IP     N   +  + +S +    ++       LS +  + +  
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 502 NQLFGSLPPEI-GTLTELELLDLSENRLSNAIPG--SLGNLLKVHYLNLSNNEFSHKIPT 558
            +    + P+    L  L+ L +    L    P    + +      L +++N +   IP 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 559 Q-FEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQ-LSGFIPNCFEDMH-GL 615
             F+ L  +   L L  N     +     N   L  + L+ N+ L+    + F  ++ G 
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 616 SSIDISYNRLQ 626
           S +D+S   + 
Sbjct: 208 SLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 9/168 (5%)

Query: 73  TLDEFSFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANKLSGKIPPE--IGQ 129
            L+  SF +   +  + + N      I P    +L  L++L +    L    P    +  
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYS 128

Query: 130 LSFLSELSLYSNCLNGSIP-QSLGNLSKQSL-LSLYNNSLSGYIPPVIGNLISLSTLDLS 187
                 L +  N    SIP  +   L  ++L L LYNN  +  +     N   L  + L+
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 188 LNQLIGSVP--FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
            N+ +  +    F G  +    L +   S++      L  LK L   N
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 47/236 (19%), Positives = 85/236 (36%), Gaps = 18/236 (7%)

Query: 252 NLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL 311
                 +   ++   IP       S   L L    L  +   +  N  N+S +Y+  +  
Sbjct: 12  QEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 312 SGSIPKEI-GNLKCLFDLELSMNN-LTGVIPSSIGNLRNLRLLYLYRNELSGSIPQ--AI 367
              +      NL  +  +E+     LT + P ++  L  L+ L ++   L    P    +
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKV 126

Query: 368 GNLVELVSLLLGFNYFRGPIPKN-FKNLTNLVRV-RMNQNNLSGNISEAFVGTYPTLSFL 425
            +      L +  N +   IP N F+ L N     ++  N  +     AF GT   L  +
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT--KLDAV 184

Query: 426 DLSHNNFHGQISSD--WGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNH 479
            L+ N +   I  D   G +     LD S  ++T ++P +      L+ L   +  
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 12/209 (5%)

Query: 109 LQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIP-QSLGNLSKQSLLSLYNNS 166
            Q L L    L   IP      L  +S + +  +     +   S  NLSK + + + N  
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 167 LSGYIPP-VIGNLISLSTLDLSLNQLIGSVP--FFLGNLTNLVTLHLFNNSLSGFIPSTL 223
              YI P  +  L  L  L +     +   P    + +      L + +N     IP   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 224 --GKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI--GNLRSLSN 279
             G       L +  N  + ++     N   L +++L  N+    I K+   G     S 
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 280 LDLSINRLNGVIPSSIGNSNNLSILYLYS 308
           LD+S   +  +    + +   L     ++
Sbjct: 210 LDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 13/206 (6%)

Query: 83  PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSN 141
           P    L L    L  I     S L  +  + +S +    ++       LS ++ + + + 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 142 CLNGSIPQS-LGNLSKQSLLSLYNNSLSGYIPPV--IGNLISLSTLDLSLNQLIGSVP-- 196
                I    L  L     L ++N  L    P +  + +      L+++ N  + S+P  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI--GNVRNLR 254
            F G     +TL L+NN  +  +         L  + ++ N     I      G      
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 255 SLFLYSNELSGSIPKEIGNLRSLSNL 280
            L +    ++ ++P +   L  L  L
Sbjct: 209 LLDVSQTSVT-ALPSKG--LEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 17/207 (8%)

Query: 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSN 478
           P+   L L   +     S  +   P +  +  S++     +      N SK+  + + + 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 479 HIGGKIPME-LGRLSSLNKLILNKNQLFGSLPPE--IGTLTELELLDLSENRLSNAIPG- 534
                I  + L  L  L  L +    L    P    + +     +L++++N    +IP  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 535 ---SLGNLLKVHYLNLSNNEFSHKIPTQ-FEKLQLQLSELDLSQNFLEGEIPSQICN--M 588
               L N      L L NN F+  +    F   +L    + L++N     I         
Sbjct: 150 AFQGLCNET--LTLKLYNNGFTS-VQGYAFNGTKLD--AVYLNKNKYLTVIDKDAFGGVY 204

Query: 589 ESLVKLNLSYNQLSGFIPNCFEDMHGL 615
                L++S   ++       E +  L
Sbjct: 205 SGPSLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 9/140 (6%)

Query: 515 LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQ-FEKLQLQLSELDLS 573
               + L L E  L      +  NL  +  + +S +    ++ +  F  L  +++ +++ 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIR 88

Query: 574 QNFLEGEIPSQIC-NMESLVKLNLSYNQLSGFIP-NCFEDMHGLSSIDISYNRLQGPVPF 631
                  I       +  L  L +    L  F              ++I+ N     +P 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP- 147

Query: 632 SKAFRDAPAE----ALQGNR 647
             AF+    E     L  N 
Sbjct: 148 VNAFQGLCNETLTLKLYNNG 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 82  FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYS 140
             D   L+L +N+L  +      +L KL+ L L+ NKL   +P  I  +L  L  L +  
Sbjct: 36  PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94

Query: 141 NCLNGSIPQSL-GNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQLIGSVP-- 196
           N L  ++P  +   L   + L L  N L   +PP V  +L  L+ L L  N+L  S+P  
Sbjct: 95  NKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPKG 151

Query: 197 -FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRS 255
            F    LT+L  L L+NN L         KL  L  L +  N L      +  ++  L+ 
Sbjct: 152 VF--DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 256 LFLYSN 261
           L L  N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.0 bits (185), Expect = 5e-15
 Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 5/177 (2%)

Query: 449 LDFSVNNITGSIPPEIGNS-SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
           LD   N ++ S+P +  +  +KL++L L+ N +          L +L  L +  N+L  +
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QA 99

Query: 508 LPPEIGT-LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQ 566
           LP  +   L  L  L L  N+L +  P    +L K+ YL+L  NE        F+KL   
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-S 158

Query: 567 LSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
           L EL L  N L+         +  L  L L  NQL       F+ +  L  + +  N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 59/186 (31%), Positives = 80/186 (43%), Gaps = 14/186 (7%)

Query: 62  GINLTTTSLN------GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
            I   T  L+       +L   +F     L  L L +N+L  +      +L  L+ L ++
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93

Query: 116 ANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQSL-GNLSKQSLLSLYNNSLSGYIPP 173
            NKL   +P  +  QL  L+EL L  N L  S+P  +  +L+K + LSL  N L   +P 
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150

Query: 174 -VIGNLISLSTLDLSLNQLIGSVPFFL-GNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN 231
            V   L SL  L L  NQL   VP      LT L TL L NN L          L+ L  
Sbjct: 151 GVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 232 LNMSMN 237
           L +  N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 7/170 (4%)

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTE 517
           +IP  I   +  + L+L SN +         RL+ L  L LN N+L  +LP  I   L  
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKN 86

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFL 577
           LE L +++N+L     G    L+ +  L L  N+     P  F+ L  +L+ L L  N L
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNEL 145

Query: 578 EGEIPSQIC-NMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           +  +P  +   + SL +L L  NQL       F+ +  L ++ +  N+L+
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 30/206 (14%)

Query: 203 TNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNVRNLRSLFLYSN 261
            +   L L +N LS        +L  L  L ++ N L   +P+ I   ++NL +L++  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 262 ELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNS-NNLSILYLYSNQLSGSIPKEI 319
           +L  ++P  +   L +L+ L L  N+L   +P  + +S   L+ L L  N+L  S+PK +
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

Query: 320 GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLG 379
                 FD                  L +L+ L LY N+L      A   L EL +L L 
Sbjct: 153 ------FD-----------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 380 FNYFRGPIPKNFKNLTNLVRVRMNQN 405
            N  +      F +L  L  +++ +N
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 7/182 (3%)

Query: 421 TLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNH 479
               LDL  N      S  + R  +L  L  + N +  ++P  I      L+ L ++ N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 480 IGGKIPMEL-GRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLG 537
           +   +P+ +  +L +L +L L++NQL  SLPP +  +LT+L  L L  N L +   G   
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 538 NLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLS 597
            L  +  L L NN+        F+KL  +L  L L  N L+        ++E L  L L 
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLT-ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 598 YN 599
            N
Sbjct: 214 EN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 53/191 (27%), Positives = 76/191 (39%), Gaps = 29/191 (15%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301
           AIPS+I    + + L L SN+LS    K    L  L  L L+ N+L  +         NL
Sbjct: 30  AIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 302 SILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS 360
             L++  N+L  ++P  +   L  L +L L  N L  + P    +L  L  L L  NEL 
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 361 GSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYP 420
            S+P+ +                       F  LT+L  +R+  N L      AF     
Sbjct: 147 -SLPKGV-----------------------FDKLTSLKELRLYNNQLKRVPEGAFDKL-T 181

Query: 421 TLSFLDLSHNN 431
            L  L L +N 
Sbjct: 182 ELKTLKLDNNQ 192

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 49/237 (20%), Positives = 91/237 (38%), Gaps = 17/237 (7%)

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
           F    L N V  +L   S++     +  +L  + N N   +++     + +    NL+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKEL 68

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP 316
            L  N++S   P  + +L  L  L ++ NRL  +   +   S  LS L+L +N+L     
Sbjct: 69  HLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRD--T 121

Query: 317 KEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSL 376
             + +LK L  L +  N L  +    +G L  L +L L+ NE++ +    +  L ++  +
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177

Query: 377 LLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSG--NISEAFVGTYPTLSFLDLSHNN 431
            L          K    L     V+           IS         + +    + +
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTD 234

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 47/261 (18%), Positives = 90/261 (34%), Gaps = 22/261 (8%)

Query: 77  FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL 136
           F      + +  NL    +  ++     +L  +Q  +   + +   +   +   + L EL
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68

Query: 137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP 196
            L  N +  S    L +L+K   LS+  N L   +  +      LS L L  N+L  +  
Sbjct: 69  HLSHNQI--SDLSPLKDLTKLEELSVNRNRLKN-LNGI--PSACLSRLFLDNNELRDTDS 123

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
             L +L NL  L + NN L       LG L  L  L++  N ++      +  ++ +  +
Sbjct: 124 --LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWI 177

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP 316
            L   +      K    L   + +     R   + P  I N  +          +   +P
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYV-----DGCVLWELP 230

Query: 317 KEIGNLKCLFDLELSMNNLTG 337
                +   F   +++     
Sbjct: 231 VYTDEVSYKFSEYINVGETEA 251

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 23/238 (9%)

Query: 367 IGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLD 426
              L   V   LG          + K L+ +     + +N+  +++   +  +  L  L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQ-SLAG--MQFFTNLKELH 69

Query: 427 LSHNNFHGQIS--SDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKI 484
           LSHN    QIS  S      +L  L  + N +  ++      S+ L  L L +N +  + 
Sbjct: 70  LSHN----QISDLSPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNEL--RD 120

Query: 485 PMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHY 544
              L  L +L  L +  N+L  S+   +G L++LE+LDL  N ++N     L  L KV++
Sbjct: 121 TDSLIHLKNLEILSIRNNKL-KSIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176

Query: 545 LNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLS 602
           ++L+  +  ++      +L +  +  D    ++    P  I N  S V   + +    
Sbjct: 177 IDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS---PYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 21/244 (8%)

Query: 64  NLTTTSLNGTL--DEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG 121
           N    +L      D  S      +   N  N+ +  +    +     L+ L LS N++S 
Sbjct: 20  NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS- 76

Query: 122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSL--LSLYNNSLSGYIPPVIGNLI 179
            + P +  L+ L ELS+  N L      +L  +    L  L L NN L       + +L 
Sbjct: 77  DLSP-LKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRD--TDSLIHLK 128

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239
           +L  L +  N+ + S+   LG L+ L  L L  N ++      L +LK ++ ++++    
Sbjct: 129 NLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC 184

Query: 240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSN 299
                     +    ++           P  I N  S  +  +           S   S 
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYTDEVSYKFSE 242

Query: 300 NLSI 303
            +++
Sbjct: 243 YINV 246

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 43/238 (18%), Positives = 82/238 (34%), Gaps = 21/238 (8%)

Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162
              L      +L    ++  +     +LS +   +  ++ +       +   +    L L
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHL 70

Query: 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
            +N +S   P  + +L  L  L ++ N+L             L  L L NN L      +
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNNELRDT--DS 123

Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDL 282
           L  LK L  L++  N L       +G +  L  L L+ NE++ +    +  L+ ++ +DL
Sbjct: 124 LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDL 179

Query: 283 SINRLNGVIPSSIGNSNNLSILYLYSNQLSGSI--PKEIGNLKCLFDLELSMNNLTGV 338
           +  +    +   +     L I     +   G    P  I N     D  +        
Sbjct: 180 TGQK---CVNEPVKYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 39/183 (21%), Positives = 73/183 (39%), Gaps = 16/183 (8%)

Query: 443 FPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKN 502
                  +    ++T  +       S +Q  N  +++I  +    +   ++L +L L+ N
Sbjct: 18  LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHN 73

Query: 503 QLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK 562
           Q+   L P +  LT+LE L ++ NRL N        L     L L NNE           
Sbjct: 74  QI-SDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACL---SRLFLDNNELRD--TDSLIH 126

Query: 563 LQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISY 622
           L+  L  L +  N L+  I   +  +  L  L+L  N+++         +  ++ ID++ 
Sbjct: 127 LK-NLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTG 181

Query: 623 NRL 625
            + 
Sbjct: 182 QKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 38/237 (16%), Positives = 83/237 (35%), Gaps = 20/237 (8%)

Query: 245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSIL 304
                + N     L    ++  +      L  + N +   + +  +  + +    NL  L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKEL 68

Query: 305 YLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIP 364
           +L  NQ+S   P  + +L  L +L ++ N L  +   +      L  L+L  NEL     
Sbjct: 69  HLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRD--T 121

Query: 365 QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSF 424
            ++ +L  L  L +  N  +         L+ L  + ++ N ++   +   +     +++
Sbjct: 122 DSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNW 176

Query: 425 LDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE-IGNSSKLQVLNLSSNHI 480
           +DL+       ++      P+L   +   +     I P  I N        +     
Sbjct: 177 IDLTGQKC---VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELP 230

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 32/209 (15%), Positives = 70/209 (33%), Gaps = 24/209 (11%)

Query: 300 NLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNEL 359
           N     L    ++  +      L  + +     +N+  +  + +    NL+ L+L  N++
Sbjct: 20  NAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQI 75

Query: 360 SGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGN-ISE-AFVG 417
           S  +   + +L +L  L +  N  +         L+ L         L  N + +   + 
Sbjct: 76  S-DLS-PLKDLTKLEELSVNRNRLKNLNGIPSACLSRL--------FLDNNELRDTDSLI 125

Query: 418 TYPTLSFLDLSHNNFHGQIS--SDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNL 475
               L  L + +N    ++      G   +L  LD   N IT +    +    K+  ++L
Sbjct: 126 HLKNLEILSIRNN----KLKSIVMLGFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDL 179

Query: 476 SSNHIGGKIPMELGRLSSLNKLILNKNQL 504
           +      +       L   N +     + 
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.9 bits (191), Expect = 5e-15
 Identities = 44/283 (15%), Positives = 82/283 (28%), Gaps = 29/283 (10%)

Query: 299 NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNE 358
            +L    L       +            +  L  +               L    L   +
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEK 360

Query: 359 LSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGT 418
            +  +   + +  EL  L     +    I    + L  L+     +       S      
Sbjct: 361 ST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL----YEKETLQYFST----- 410

Query: 419 YPTLSFLDLSHNNFHGQISSDWGRFPQLG--------TLDFSVNNITGSIPPEIGNSSKL 470
              L  +D     +   + S +     +          L  +  ++T  +   +     +
Sbjct: 411 ---LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLV 465

Query: 471 QVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSN 530
             L+LS N +   +P  L  L  L  L  + N L  ++   +  L  L+ L L  NRL  
Sbjct: 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQ 522

Query: 531 -AIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDL 572
            A    L +  ++  LNL  N    +     E+L   L  +  
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 76.3 bits (187), Expect = 1e-14
 Identities = 47/260 (18%), Positives = 90/260 (34%), Gaps = 22/260 (8%)

Query: 277 LSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLT 336
           L    L+              S++     L  ++      ++    + LF  ELS+   T
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKST 362

Query: 337 GVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
            V+ S + + + L+ L         +I   +  L  L+              + F  L  
Sbjct: 363 -VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL--------QYFSTLKA 413

Query: 397 LVRVRMNQNNLSGNI----SEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452
           +  +R    +   +     +      Y  +  L L+H +    +     +   +  LD S
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHL-EQLLLVTHLDLS 471

Query: 453 VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLP--P 510
            N +  ++PP +     L+VL  S N +   +   +  L  L +L+L  N+L        
Sbjct: 472 HNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL-QQSAAIQ 527

Query: 511 EIGTLTELELLDLSENRLSN 530
            + +   L LL+L  N L  
Sbjct: 528 PLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 51/318 (16%), Positives = 96/318 (30%), Gaps = 38/318 (11%)

Query: 36  LSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFS---SFPDLLFLNLFN 92
           L  V+    ++   +    N    V   +L   SLN  L + +F    +  D     +  
Sbjct: 275 LLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLL 334

Query: 93  NELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLG 152
            +         +   +L   +LS  K +  +  E+     L EL   +            
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK----------- 382

Query: 153 NLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFN 212
                 +L +       Y    +    +L  +D                      L    
Sbjct: 383 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP----------------MRAAYLDDLR 426

Query: 213 NSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG 272
           +           +   +  L+++   L+  +   +  +  +  L L  N L  ++P  + 
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALA 483

Query: 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG-SIPKEIGNLKCLFDLELS 331
            LR L  L  S N L  V    + N   L  L L +N+L   +  + + +   L  L L 
Sbjct: 484 ALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 332 MNNLTGVIPSSIGNLRNL 349
            N+L          L  +
Sbjct: 542 GNSLCQ-EEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 8e-12
 Identities = 49/317 (15%), Positives = 98/317 (30%), Gaps = 25/317 (7%)

Query: 126 EIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLIS----- 180
           E   +     +S    CL+    + L   S+   L L  +     +     +  +     
Sbjct: 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHV 299

Query: 181 ----LSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236
               L    L+      +         +     L  +    +        + L    +S+
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSV 358

Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSI---PKEIGNLRSLSNLDLSINRLNGVIPS 293
              +  + S + + + L+ L   +     +I    + +  L          + L  V P 
Sbjct: 359 EKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417

Query: 294 SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLY 353
                ++L   +L  N +             +  L L+  +LT +    +  L  +  L 
Sbjct: 418 RAAYLDDLRSKFLLENSVL------KMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLD 469

Query: 354 LYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISE 413
           L  N L  ++P A+  L  L  L    N     +     NL  L  + +  N L  + + 
Sbjct: 470 LSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI 526

Query: 414 AFVGTYPTLSFLDLSHN 430
             + + P L  L+L  N
Sbjct: 527 QPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 8e-12
 Identities = 41/222 (18%), Positives = 70/222 (31%), Gaps = 29/222 (13%)

Query: 427 LSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPM 486
           +   +       D     QL   + SV   T  +  E+ +  +LQ L   +      I +
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL 390

Query: 487 ELGRLSSLNKLILNKNQL---------------------FGSLPPEIGTLTELELLDLSE 525
            +  L  L                                           ++ +L L+ 
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 526 NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI 585
             L+  +   L  LL V +L+LS+N     +P     L+  L  L  S N LE  +   +
Sbjct: 451 KDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR-CLEVLQASDNALE-NVDG-V 504

Query: 586 CNMESLVKLNLSYNQLSGF-IPNCFEDMHGLSSIDISYNRLQ 626
            N+  L +L L  N+L              L  +++  N L 
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 6e-08
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 7/112 (6%)

Query: 78  SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELS 137
                  +  L+L +N L  + PP ++ L  L+ L  S N L   +   +  L  L EL 
Sbjct: 458 HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELL 514

Query: 138 LYSNCLNG-SIPQSLGNLSKQSLLSLYNNSLS---GYIPPVIGNLISLSTLD 185
           L +N L   +  Q L +  +  LL+L  NSL    G    +   L S+S++ 
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 8/155 (5%)

Query: 160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPF--FLGNLTNLVTLHLFNNSLSG 217
           L L +  L+         L  L+ L+L  NQL  ++    F   LT L TL L NN L+ 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDD-LTELGTLGLANNQLAS 97

Query: 218 FIPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNVRNLRSLFLYSNELSGSIPKEI-GNLR 275
                   L  L  L +  N L  ++PS +   +  L+ L L +N+L  SIP      L 
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 276 SLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQ 310
           +L  L LS N+L  V   +      L  + L+ NQ
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.1 bits (159), Expect = 9e-12
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 203 TNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNVRNLRSLFLYSN 261
            +   L L +  L+    +T   L  L+ LN+  N L   + + +  ++  L +L L +N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN 93

Query: 262 ELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNS-NNLSILYLYSNQLSGSIPKEI 319
           +L+ S+P  +  +L  L  L L  N+L   +PS + +    L  L L +NQL  SIP   
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGA 150

Query: 320 -GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357
              L  L  L LS N L  V   +   L  L+ + L+ N
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 6/166 (3%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301
           ++PS I    +   L L S  L+         L  L+ L+L  N+L  +      +   L
Sbjct: 28  SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85

Query: 302 SILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS 360
             L L +NQL+ S+P  +  +L  L  L L  N L  +       L  L+ L L  N+L 
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 361 GSIPQ-AIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQN 405
            SIP  A   L  L +L L  N  +      F  L  L  + +  N
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 54/165 (32%), Positives = 72/165 (43%), Gaps = 20/165 (12%)

Query: 62  GINLTTTSLN------GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
           GI   T  L+       TL + +F     L +LNL  N+L  +       L +L  L L+
Sbjct: 32  GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91

Query: 116 ANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQ----SLGNLSKQSLLSLYNNSLSGY 170
            N+L+  +P  +   L+ L +L L  N L  S+P      L  L +   L L  N L   
Sbjct: 92  NNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKE---LRLNTNQLQS- 145

Query: 171 IPP-VIGNLISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNN 213
           IP      L +L TL LS NQL  SVP      L  L T+ LF N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTE 517
           S+P  I   +  + L+L S  +          L+ L  L L+ NQL  +L   +   LTE
Sbjct: 28  SVPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTE 84

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQ-FEKLQLQLSELDLSQNF 576
           L  L L+ N+L++   G   +L ++  L L  N+    +P+  F++L  +L EL L+ N 
Sbjct: 85  LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRL-TKLKELRLNTNQ 142

Query: 577 LEGEIPSQICN-MESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
           L+  IP+   + + +L  L+LS NQL       F+ +  L +I +  N
Sbjct: 143 LQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 45/159 (28%), Positives = 64/159 (40%), Gaps = 14/159 (8%)

Query: 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIP----QSLGNLSKQSLLSLYNN 165
           + LDL +  L+         L+ L+ L+L  N L  ++       L  L     L L NN
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGT---LGLANN 93

Query: 166 SLSGYIPPVIGNLISLSTLDLSLNQLIGSVP---FFLGNLTNLVTLHLFNNSLSGFIPST 222
            L+     V  +L  L  L L  NQL  S+P   F    LT L  L L  N L       
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVF--DRLTKLKELRLNTNQLQSIPAGA 150

Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSN 261
             KL  L  L++S N L      +   +  L+++ L+ N
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 47/158 (29%), Positives = 64/158 (40%), Gaps = 16/158 (10%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLN-- 144
           L+L +  L  +       L KL +L+L  N+L   +   +   L+ L  L L +N L   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98

Query: 145 -GSIPQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQLIGSVP---FFL 199
              +   L  L K   L L  N L   +P  V   L  L  L L+ NQL  S+P   F  
Sbjct: 99  PLGVFDHLTQLDK---LYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQL-QSIPAGAF-- 151

Query: 200 GNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN 237
             LTNL TL L  N L         +L  L  + +  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 135 ELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS 194
           +L L S  L      +   L+K + L+L  N L      V  +L  L TL L+ NQL  S
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-AS 97

Query: 195 VP---FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNV 250
           +P   F   +LT L  L+L  N L         +L  L  L ++ N L  +IP+     +
Sbjct: 98  LPLGVF--DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 251 RNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSIN 285
            NL++L L +N+L  S+P      L  L  + L  N
Sbjct: 155 TNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 8/153 (5%)

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKC 324
           S+P  I        LDL    L  +  ++      L+ L L  NQL  ++   +  +L  
Sbjct: 28  SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 325 LFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAI-GNLVELVSLLLGFNYF 383
           L  L L+ N L  +      +L  L  LYL  N+L  S+P  +   L +L  L L  N  
Sbjct: 85  LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL 143

Query: 384 RGPIPKN-FKNLTNLVRVRMNQNNLSGNISEAF 415
           +  IP   F  LTNL  + ++ N L      AF
Sbjct: 144 QS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 31/179 (17%)

Query: 375 SLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHG 434
            L L            F+ LT L  + ++ N L          T     F DL+      
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ---------TLSAGVFDDLT------ 83

Query: 435 QISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS-SKLQVLNLSSNHIGGKIPMEL-GRLS 492
                     +LGTL  + N +  S+P  + +  ++L  L L  N +   +P  +  RL+
Sbjct: 84  ----------ELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLT 131

Query: 493 SLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
            L +L LN NQL  S+P      LT L+ L LS N+L +   G+   L K+  + L  N
Sbjct: 132 KLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 496 KLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHK 555
           KL L    L          LT+L  L+L  N+L     G   +L ++  L L+NN+ +  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 556 IPTQFEKLQLQLSELDLSQNFLEGEIPSQIC-NMESLVKLNLSYNQLSGFIPNCFEDMHG 614
               F+ L  QL +L L  N L+  +PS +   +  L +L L+ NQL       F+ +  
Sbjct: 99  PLGVFDHLT-QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 615 LSSIDISYNRLQ 626
           L ++ +S N+LQ
Sbjct: 157 LQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 44/137 (32%), Positives = 58/137 (42%), Gaps = 16/137 (11%)

Query: 64  NLTTTSLNG----TLDEFSFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANK 118
            LT  +L+     TL    F    +L  L L NN+L   +P  +   L +L  L L  N+
Sbjct: 60  KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ 118

Query: 119 LSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQ----SLGNLSKQSLLSLYNNSLSGYIPP 173
           L   +P  +  +L+ L EL L +N L  SIP      L NL     LSL  N L      
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQT---LSLSTNQLQSVPHG 173

Query: 174 VIGNLISLSTLDLSLNQ 190
               L  L T+ L  NQ
Sbjct: 174 AFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 507 SLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQ 566
           S+P  I   TE   LDL    L+     +   L K+ +LNL  N+        F+ L  +
Sbjct: 28  SVPSGIPADTEK--LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-E 84

Query: 567 LSELDLSQNFLEGEIPSQI-CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRL 625
           L  L L+ N L   +P  +  ++  L KL L  NQL       F+ +  L  + ++ N+L
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 626 Q 626
           Q
Sbjct: 144 Q 144

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGS 146
           + L  N +  I P   S   KL+ +DLS N++S ++ P+    L  L+ L LY N +   
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 147 IPQSL-GNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQLIGSVPFFLGNLTN 204
           +P+SL   L    LL L  N ++  +      +L +L+ L L  N+L          L  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 205 LVTLHLFNN 213
           + T+HL  N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 5/130 (3%)

Query: 448 TLDFSVNNITGSIPPEI-GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFG 506
            +    N I   IPP       KL+ ++LS+N I    P     L SLN L+L  N++  
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-T 93

Query: 507 SLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQL 565
            LP  +   L  L+LL L+ N+++     +  +L  ++ L+L +N+        F  L+ 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR- 152

Query: 566 QLSELDLSQN 575
            +  + L+QN
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 4/129 (3%)

Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNG 289
            + +  N +    P +    + LR + L +N++S  +  +    LRSL++L L  N++  
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 290 VIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRN 348
           +  S      +L +L L +N+++  +  +   +L  L  L L  N L  +   +   LR 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 349 LRLLYLYRN 357
           ++ ++L +N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 507 SLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQ 566
            +P  +        + L +N +    PG+     K+  ++LSNN+ S   P  F+ L+  
Sbjct: 25  EIPTNLPETITE--IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-S 81

Query: 567 LSELDLSQNFLEGEIPSQI-CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRL 625
           L+ L L  N +  E+P  +   + SL  L L+ N+++    + F+D+H L+ + +  N+L
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 626 Q 626
           Q
Sbjct: 141 Q 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 4/129 (3%)

Query: 279 NLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTG 337
            + L  N +  + P +      L  + L +NQ+S  +  +    L+ L  L L  N +T 
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 338 VIPSSIGNLRNLRLLYLYRNELSGSIP-QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
           +  S    L +L+LL L  N+++  +   A  +L  L  L L  N  +      F  L  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 397 LVRVRMNQN 405
           +  + + QN
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 135 ELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQLIG 193
           E+ L  N +    P +     K   + L NN +S  + P     L SL++L L  N++  
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 194 SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL 253
                   L +L  L L  N ++         L  L+ L++  N L      +   +R +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 254 RSLFLYSN 261
           +++ L  N
Sbjct: 155 QTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 496 KLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSH 554
           ++ L +N +   +PP       +L  +DLS N++S   P +   L  ++ L L  N+ + 
Sbjct: 36  EIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 555 KIPTQFEKLQLQLSELDLSQNFLEGEIPSQI-CNMESLVKLNLSYNQLSGFIPNCFEDMH 613
              + FE L   L  L L+ N +   +      ++ +L  L+L  N+L       F  + 
Sbjct: 95  LPKSLFEGLF-SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 614 GLSSIDISYN 623
            + ++ ++ N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 53/190 (27%)

Query: 362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPT 421
            IP  +     +  + L  N  +   P  F     L R+ ++ N +S             
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---------ELAP 73

Query: 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG 481
            +F  L                  L +L    N IT  +P  +                 
Sbjct: 74  DAFQGL----------------RSLNSLVLYGNKIT-ELPKSL----------------- 99

Query: 482 GKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLL 540
                    L SL  L+LN N++   L  +    L  L LL L +N+L     G+   L 
Sbjct: 100 ------FEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 541 KVHYLNLSNN 550
            +  ++L+ N
Sbjct: 153 AIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 183 TLDLSLNQL--IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240
            L L+ N+   + +   F   L  L  ++  NN ++            ++ + ++ N L 
Sbjct: 36  ELRLNNNEFTVLEATGIF-KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 241 GAIPSSI-GNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNS 298
             +   +   + +L++L L SN ++  +  +    L S+  L L  N++  V P +    
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 299 NNLSILYLYSNQL 311
           ++LS L L +N  
Sbjct: 153 HSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 160 LSLYNNSLSGYIPP--VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSG 217
           L L NN  +  +    +   L  L  ++ S N++           + +  + L +N L  
Sbjct: 37  LRLNNNEFTV-LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 218 FIPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNVRNLRSLFLYSNELSGSIPKEI-GNLR 275
                   L+ L  L +  N ++  + +     + ++R L LY N+++ ++       L 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 276 SLSNLDLSIN 285
           SLS L+L  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 448 TLDFSVNNITGSIPPEIG--NSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF 505
            L  + N  T  +          +L+ +N S+N I           S +N+++L  N+L 
Sbjct: 36  ELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL- 93

Query: 506 GSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ 564
            ++  ++   L  L+ L L  NR++     S   L  V  L+L +N+ +   P  F+ L 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 565 LQLSELDLSQN 575
             LS L+L  N
Sbjct: 154 -SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 7/143 (4%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNSNN 300
            IP  I   +    L L +NE +      I   L  L  ++ S N++  +   +   ++ 
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 301 LSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNEL 359
           ++ + L SN+L  ++  ++   L+ L  L L  N +T V   S   L ++RLL LY N++
Sbjct: 83  VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 360 SGSIPQ-AIGNLVELVSLLLGFN 381
           + ++   A   L  L +L L  N
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 83  PDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYS 140
                L L NNE   +    I  +L +L+ ++ S NK++  I        S ++E+ L S
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 141 NCLNGSIPQSL-GNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQLIGSVPFF 198
           N L  ++   +   L     L L +N ++  +       L S+  L L  NQ+    P  
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148

Query: 199 LGNLTNLVTLHLFNN 213
              L +L TL+L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 507 SLPPEIGTLTELELLDLSENRLSNAIP-GSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQL 565
            +P  I   T    L L+ N  +     G    L ++  +N SNN+ +      FE    
Sbjct: 25  KIPEHIPQYTAE--LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS- 81

Query: 566 QLSELDLSQNFLEGEIPSQIC-NMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNR 624
            ++E+ L+ N LE  +  ++   +ESL  L L  N+++    + F  +  +  + +  N+
Sbjct: 82  GVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 625 LQ 626
           + 
Sbjct: 141 IT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 78  SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSEL 136
            F   P L  +N  NN++  I          +  + L++N+L   +  ++   L  L  L
Sbjct: 52  IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTL 110

Query: 137 SLYSNCLNGSIPQ-SLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL 191
            L SN +   +   S   LS   LLSLY+N ++   P     L SLSTL+L  N  
Sbjct: 111 MLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 34/169 (20%)

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPM-ELGRLSSLNKLILNKNQLFGSLPPEIGT--- 514
            IP  I        L L++N            +L  L K+  + N++   +    G    
Sbjct: 25  KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEE--GAFEG 79

Query: 515 LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQ 574
            + +  + L+ NRL N        L  +  L L +N  +      F  L           
Sbjct: 80  ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS---------- 129

Query: 575 NFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
                          S+  L+L  NQ++   P  F+ +H LS++++  N
Sbjct: 130 ---------------SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 33/190 (17%), Positives = 58/190 (30%), Gaps = 54/190 (28%)

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNL 349
           IP  I      + L L +N+ +      I   L  L  +  S N +T +   +      +
Sbjct: 26  IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83

Query: 350 RLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSG 409
             + L  N L  ++   +                       FK L +L  + +  N ++ 
Sbjct: 84  NEILLTSNRLE-NVQHKM-----------------------FKGLESLKTLMLRSNRIT- 118

Query: 410 NISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS-S 468
                        SF+ L                  +  L    N IT ++ P   ++  
Sbjct: 119 --------CVGNDSFIGL----------------SSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 469 KLQVLNLSSN 478
            L  LNL +N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 10/109 (9%)

Query: 64  NLTTTSLNG----TLDEFSFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANK 118
            L   + +      ++E +F     +  + L +N L  +   ++   L  L+ L L +N+
Sbjct: 58  QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNR 116

Query: 119 LSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQ-SLGNLSKQSLLSLYNN 165
           ++  +  +    LS +  LSLY N +  ++   +   L   S L+L  N
Sbjct: 117 IT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 17/134 (12%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGS 146
           L L +N++  + P     L  L+ L L +N+L   +P  +   L+ L+ L L +N L   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-V 102

Query: 147 IPQ----SLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP---FFL 199
           +P      L +L +   L +  N L+  +P  I  L  L+ L L  NQL  S+P   F  
Sbjct: 103 LPSAVFDRLVHLKE---LFMCCNKLTE-LPRGIERLTHLTHLALDQNQL-KSIPHGAF-- 155

Query: 200 GNLTNLVTLHLFNN 213
             L++L   +LF N
Sbjct: 156 DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTE 517
           S+P  I  ++  Q+L L  N I    P     L +L +L L  NQL G+LP  +  +LT+
Sbjct: 33  SVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQ 89

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFL 577
           L +LDL  N+L+         L+ +  L +  N+   ++P   E+L   L+ L L QN L
Sbjct: 90  LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLT-HLTHLALDQNQL 147

Query: 578 EGEIPSQICNMESLVKLNLSYNQ 600
           +         + SL    L  N 
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 27/164 (16%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301
           ++P+ I    N + L+L+ N+++   P    +L +L  L L  N+L  +      +   L
Sbjct: 33  SVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 302 SILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG 361
           ++L L +NQL+  +P  +      FD                  L +L+ L++  N+L+ 
Sbjct: 91  TVLDLGTNQLT-VLPSAV------FD-----------------RLVHLKELFMCCNKLT- 125

Query: 362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQN 405
            +P+ I  L  L  L L  N  +      F  L++L    +  N
Sbjct: 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query: 184 LDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI 243
           L L  NQ+    P    +L NL  L+L +N L          L  L+ L++  N L+  +
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 244 PSSI-GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLS 302
           PS++   + +L+ LF+  N+L+  +P+ I  L  L++L L  N+L  +   +    ++L+
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 303 ILYLYSNQ 310
             YL+ N 
Sbjct: 163 HAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 5/129 (3%)

Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNG 289
            L +  N ++   P    ++ NL+ L+L SN+L  ++P  +  +L  L+ LDL  N+L  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 290 VIPSSIGNS-NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRN 348
           V+PS++ +   +L  L++  N+L+  +P+ I  L  L  L L  N L  +   +   L +
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 349 LRLLYLYRN 357
           L   YL+ N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%)

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLR 350
           +P+ I    N  ILYL+ NQ++   P    +L  L +L L  N L  +      +L  L 
Sbjct: 34  VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91

Query: 351 LLYLYRNELSGSIPQAI-GNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSG 409
           +L L  N+L+  +P A+   LV L  L +  N     +P+  + LT+L  + ++QN L  
Sbjct: 92  VLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKS 149

Query: 410 NISEAF 415
               AF
Sbjct: 150 IPHGAF 155

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 135 ELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS 194
            L L+ N +    P    +L     L L +N L      V  +L  L+ LDL  NQL   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-TV 102

Query: 195 VP---FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVR 251
           +P   F    L +L  L +  N L+  +P  + +L  L++L +  N L      +   + 
Sbjct: 103 LPSAVF--DRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 252 NLRSLFLYSN 261
           +L   +L+ N
Sbjct: 160 SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLN---GSIPQSLGNLSKQSLLSLYNNS 166
           Q L L  N+++   P     L  L EL L SN L      +  SL  L+    L L  N 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV---LDLGTNQ 99

Query: 167 LSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKL 226
           L+     V   L+ L  L +  N+L   +P  +  LT+L  L L  N L         +L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 227 KCLSNLNMSMN 237
             L++  +  N
Sbjct: 159 SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 2/128 (1%)

Query: 496 KLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHK 555
            L L+ NQ+    P    +L  L+ L L  N+L     G   +L ++  L+L  N+ +  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 556 IPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGL 615
               F++L + L EL +  N L  E+P  I  +  L  L L  NQL       F+ +  L
Sbjct: 104 PSAVFDRL-VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 616 SSIDISYN 623
           +   +  N
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 449 LDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILNKNQLFGS 507
           L    N IT   P    +   L+ L L SN + G +P+ +   L+ L  L L  NQL   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL-TV 102

Query: 508 LPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQ 566
           LP  +   L  L+ L +  N+L+  +P  +  L  + +L L  N+        F++L   
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS-S 160

Query: 567 LSELDLSQN 575
           L+   L  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 507 SLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQ 566
           S+P  I T  ++  L L +N+++   PG   +L+ +  L L +N+        F+ L  Q
Sbjct: 33  SVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-Q 89

Query: 567 LSELDLSQNFLEGEIPSQICNMESLVK---LNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
           L+ LDL  N L   +PS + +   LV    L +  N+L+  +P   E +  L+ + +  N
Sbjct: 90  LTVLDLGTNQLT-VLPSAVFD--RLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQN 145

Query: 624 RLQ 626
           +L+
Sbjct: 146 QLK 148

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 65/379 (17%), Positives = 112/379 (29%), Gaps = 92/379 (24%)

Query: 180 SLSTLDLSLNQL----IGSVPFFLGNLTNLVTLHLFNNSLSG----FIPSTLGKLKCLSN 231
           S+    L L+ +      SV   L    ++  + L  N++      ++   +   K L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 232 LNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRL--NG 289
              S            G V++         E    + + +     L  + LS N      
Sbjct: 65  AEFSDI--------FTGRVKDE------IPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110

Query: 290 VIP--SSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLR 347
             P    +     L  LYL++N L      +I   + L +L ++             N  
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQELAVN---------KKAKNAP 159

Query: 348 NLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNL 407
            LR +   RN L     +                         F++   L  V+M QN +
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKT--------------------FQSHRLLHTVKMVQNGI 199

Query: 408 -----SGNISEAFVGTYPTLSFLDLSHNNFHGQ----ISSDWGRFPQLGTLDFSVNNITG 458
                   + E        L  LDL  N F       ++     +P L  L  +   ++ 
Sbjct: 200 RPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

Query: 459 SIPPEIGNS------SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI 512
                + ++        LQ L L  N I          + +L  +I  K           
Sbjct: 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDA------VRTLKTVIDEKM---------- 302

Query: 513 GTLTELELLDLSENRLSNA 531
               +L  L+L+ NR S  
Sbjct: 303 ---PDLLFLELNGNRFSEE 318

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 54/348 (15%), Positives = 107/348 (30%), Gaps = 79/348 (22%)

Query: 300 NLSI--LYLYSNQLSG----SIPKEIGNLKCLFDLELSMNNLTG----VIPSSIGNLRNL 349
             SI    L  + ++     S+   +     + ++ LS N +       +  +I + ++L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 350 RLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSG 409
            +             +    L  L+  L                   L  VR++ N    
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQAL--------------LKCPKLHTVRLSDNAFGP 108

Query: 410 NISEAFV---GTYPTLSFLDLSHNNF-------------HGQISSDWGRFPQLGTLDFSV 453
              E  +     +  L  L L +N                  ++      P L ++    
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 454 NNITG----SIPPEIGNSSKLQVLNLSSNHIGGK-IPMELGRLSSLNKLILNKNQLFGSL 508
           N +             +   L  + +  N I  + I   L    +               
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC------------- 215

Query: 509 PPEIGTLTELELLDLSENRLSN----AIPGSLGNLLKVHYLNLSNNEFSHK----IPTQF 560
                   EL++LDL +N  ++    A+  +L +   +  L L++   S +    +   F
Sbjct: 216 -------QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 561 EKLQ-LQLSELDLSQNFLEGEIPSQIC-----NMESLVKLNLSYNQLS 602
            KL+ + L  L L  N +E +    +       M  L+ L L+ N+ S
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 46/312 (14%), Positives = 94/312 (30%), Gaps = 61/312 (19%)

Query: 109 LQYLDLSANKLSGK----IPPEIGQLSFLSELSLYSNCLNG----SIPQSLGNLSKQSLL 160
           ++   L  + ++ +    +   + +   + E+ L  N +       + +++ +     + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 161 SLYNNSLS----------GYIPPVIGNLISLSTLDLSLNQL--IGSVPF--FLGNLTNLV 206
              +                +   +     L T+ LS N        P   FL   T L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 207 TLHLFNNSLS-------------GFIPSTLGKLKCLSNLNMSMNHLSG----AIPSSIGN 249
            L+L NN L                +         L ++    N L          +  +
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 250 VRNLRSLFLYSNEL-----SGSIPKEIGNLRSLSNLDLSINRLNG----VIPSSIGNSNN 300
            R L ++ +  N +        + + +   + L  LDL  N         +  ++ +  N
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 301 LSILYLYSNQLS-------GSIPKEIGNLKCLFDLELSMNNLTGVIPSSIG-----NLRN 348
           L  L L    LS            ++ N+  L  L L  N +      ++       + +
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPD 304

Query: 349 LRLLYLYRNELS 360
           L  L L  N  S
Sbjct: 305 LLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 45/266 (16%), Positives = 82/266 (30%), Gaps = 52/266 (19%)

Query: 85  LLFLNLFNNELFGIIPPQISQLFK-------LQYLDLSANKLSGKIPPEIGQL----SFL 133
             F ++F   +   IP  +  L +       L  + LS N         +       + L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 134 SELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL-- 191
             L L++N L       +     ++L  L  N  +   P        L ++    N+L  
Sbjct: 125 EHLYLHNNGLGPQAGAKIA----RALQELAVNKKAKNAP-------PLRSIICGRNRLEN 173

Query: 192 -----IGSVPFFLGNLTNLVTLHLFNNSL-----SGFIPSTLGKLKCLSNLNMSMNHLSG 241
                         +   L T+ +  N +        +   L   + L  L++  N  + 
Sbjct: 174 GSMKEWAKT---FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 242 ----AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNL------RSLSNLDLSINRLNGVI 291
               A+  ++ +  NLR L L    LS      + +         L  L L  N +    
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 292 PSSIG-----NSNNLSILYLYSNQLS 312
             ++         +L  L L  N+ S
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNRFS 316

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 53/211 (25%), Positives = 85/211 (40%), Gaps = 22/211 (10%)

Query: 62  GINLTTTSLNGTLDEFSFSSFP------DLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
                T   N  L + S +          +  +   N+++  +    I  L  ++YL L 
Sbjct: 16  DAFAETIKAN--LKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALG 71

Query: 116 ANKLSGKIPPEIG---QLSFLSELSLYSNCLNGSIPQSL-GNLSKQSLLSLYNNSLSGYI 171
            NKL      +I    +L+ L+ L L  N L  S+P  +   L+    L L  N L    
Sbjct: 72  GNKLH-----DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLP 125

Query: 172 PPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN 231
             V   L +L+ L+L+ NQL          LTNL  L L  N L         KL  L +
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185

Query: 232 LNMSMNHLSGAIPSSI-GNVRNLRSLFLYSN 261
           L +  N L  ++P  +   + +L+ ++L+ N
Sbjct: 186 LRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 55/263 (20%), Positives = 91/263 (34%), Gaps = 63/263 (23%)

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLR 350
            P             L    ++     +   L  +  +  + +++  V    I  L N+R
Sbjct: 13  FPDDA--FAETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSV--QGIQYLPNVR 66

Query: 351 LLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGN 410
            L L  N+L       I                        K LTNL  + +  N L   
Sbjct: 67  YLALGGNKL-----HDISA---------------------LKELTNLTYLILTGNQLQS- 99

Query: 411 ISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS-SK 469
                           L +  F             L  L    N +  S+P  + +  + 
Sbjct: 100 ----------------LPNGVFDK--------LTNLKELVLVENQLQ-SLPDGVFDKLTN 134

Query: 470 LQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRL 528
           L  LNL+ N +         +L++L +L L+ NQL  SLP  +   LT+L+ L L +N+L
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQL 193

Query: 529 SNAIP-GSLGNLLKVHYLNLSNN 550
            + +P G    L  + Y+ L +N
Sbjct: 194 KS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 24/195 (12%)

Query: 219 IPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLS 278
             +   K         S+         +     ++  +   ++++  S+   I  L ++ 
Sbjct: 17  AFAETIKANLKKK---SVTDAVTQNELN-----SIDQIIANNSDIK-SVQG-IQYLPNVR 66

Query: 279 NLDLSINRLNGVIPSSIG---NSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNN 334
            L L  N+L       I       NL+ L L  NQL  S+P  +   L  L +L L  N 
Sbjct: 67  YLALGGNKL-----HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQ 120

Query: 335 LTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAI-GNLVELVSLLLGFNYFRGPIPKN-FK 392
           L  +       L NL  L L  N+L  S+P+ +   L  L  L L +N  +  +P+  F 
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFD 178

Query: 393 NLTNLVRVRMNQNNL 407
            LT L  +R+ QN L
Sbjct: 179 KLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
             +    ++T     +   +S +  +  +++ I     ++   L ++  L L  N+L   
Sbjct: 23  KANLKKKSVT-DAVTQNELNS-IDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKL-HD 77

Query: 508 LPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQL 567
           +   +  LT L  L L+ N+L +   G    L  +  L L  N+        F+KL   L
Sbjct: 78  ISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-TNL 135

Query: 568 SELDLSQNFLEGEIPSQIC-NMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           + L+L+ N L+  +P  +   + +L +L+LSYNQL       F+ +  L  + +  N+L+
Sbjct: 136 TYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 38/162 (23%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301
            +P  I   R++  L+L  N+ +  +PKE+ N + L+ +DLS NR++ +   S  N   L
Sbjct: 24  VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 302 SILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG 361
             L L  N+L   IP         FD                  L++LRLL L+ N++S 
Sbjct: 81  LTLILSYNRLR-CIPPRT------FD-----------------GLKSLRLLSLHGNDIS- 115

Query: 362 SIPQ-AIGNLVELVSLLLGFN---------YFRGPIPKNFKN 393
            +P+ A  +L  L  L +G N         +    +   +K 
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKE 157

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 449 LDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSL 508
           L    N  T  +P E+ N   L +++LS+N I          ++ L  LIL+ N+L   +
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCI 93

Query: 509 PPEI-GTLTELELLDLSENRLSNAIP-GSLGNLLKVHYLNLSNN 550
           PP     L  L LL L  N +S  +P G+  +L  + +L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 5/104 (4%)

Query: 184 LDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI 243
           L L  NQ    VP  L N  +L  + L NN +S     +   +  L  L +S N L   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93

Query: 244 PSSI-GNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSIN 285
           P      +++LR L L+ N++S  +P+    +L +LS+L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLR 350
           +P  I    +++ LYL  NQ +  +PKE+ N K L  ++LS N ++ +   S  N+  L 
Sbjct: 25  LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 351 LLYLYRNELSGSIPQAI-GNLVELVSLLLGFNYFRGPIPKN-FKNLTNLVRVRMNQN 405
            L L  N L   IP      L  L  L L  N     +P+  F +L+ L  + +  N
Sbjct: 82  TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 135 ELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS 194
           EL L  N     +P+ L N    +L+ L NN +S        N+  L TL LS N+L   
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RC 92

Query: 195 VP---FFLGNLTNLVTLHLFNNSLS 216
           +P   F    L +L  L L  N +S
Sbjct: 93  IPPRTF--DGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 31/129 (24%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGS 146
           L L  N+   ++P ++S    L  +DLS N++S  +  +    ++ L  L L  N L   
Sbjct: 36  LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-C 92

Query: 147 IPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP--FFLGNLTN 204
           IP                       P     L SL  L L  N +   VP   F  +L+ 
Sbjct: 93  IP-----------------------PRTFDGLKSLRLLSLHGNDI-SVVPEGAF-NDLSA 127

Query: 205 LVTLHLFNN 213
           L  L +  N
Sbjct: 128 LSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 62  GINLTTTSLNGTLDEFS-----FSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLS 115
           GI    T L    ++F+      S++  L  ++L NN +   +  Q  S + +L  L LS
Sbjct: 28  GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILS 86

Query: 116 ANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQ-SLGNLSKQSLLSLYNN 165
            N+L   IPP     L  L  LSL+ N ++  +P+ +  +LS  S L++  N
Sbjct: 87  YNRLRC-IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 496 KLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHK 555
           +L L+ NQ    +P E+     L L+DLS NR+S     S  N+ ++  L LS N     
Sbjct: 35  ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 556 IPTQFEKLQLQLSELDLSQN 575
            P  F+ L+  L  L L  N
Sbjct: 94  PPRTFDGLK-SLRLLSLHGN 112

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 44/135 (32%), Positives = 61/135 (45%), Gaps = 18/135 (13%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGS 146
           L+L  N L  +      +L  L  L L  NKL   +P  +  +L+ L+ L+L +N L  S
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-S 90

Query: 147 IPQ----SLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQLIGSVP---FF 198
           +P      L  L +   L+L  N L   +P  V   L  L  L L  NQL  SVP   F 
Sbjct: 91  LPNGVFDKLTQLKE---LALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQL-KSVPDGVF- 144

Query: 199 LGNLTNLVTLHLFNN 213
              LT+L  + L +N
Sbjct: 145 -DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNS-NN 300
           ++P+ I        L L +N L          L SL+ L L  N+L  + P+ + N   +
Sbjct: 21  SVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTS 77

Query: 301 LSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNEL 359
           L+ L L +NQL  S+P  +   L  L +L L+ N L  +       L  L+ L LY+N+L
Sbjct: 78  LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 360 SGSIPQ-AIGNLVELVSLLLGFN 381
             S+P      L  L  + L  N
Sbjct: 137 K-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 425 LDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS-SKLQVLNLSSNHIGGK 483
           LDL  N+     +  +     L  L    N +  S+P  + N  + L  LNLS+N +   
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 484 IPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKV 542
                 +L+ L +L LN NQL  SLP  +   LT+L+ L L +N+L +   G    L  +
Sbjct: 92  PNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 543 HYLNLSNN 550
            Y+ L +N
Sbjct: 151 QYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 2/128 (1%)

Query: 135 ELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS 194
            L L +N L          L+  + L L  N L      V   L SL+ L+LS NQL   
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 195 VPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNVRNL 253
                  LT L  L L  N L         KL  L +L +  N L  ++P  +   + +L
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSL 150

Query: 254 RSLFLYSN 261
           + ++L+ N
Sbjct: 151 QYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 14/113 (12%)

Query: 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIP----QSLGNLSKQSLLSLYNN 165
            YLDL  N L         +L+ L++L L  N L  S+P      L +L+    L+L  N
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTY---LNLSTN 86

Query: 166 SLSGYIPPVIGNLISLSTLDLSLNQLIGSVP---FFLGNLTNLVTLHLFNNSL 215
            L      V   L  L  L L+ NQL  S+P   F    LT L  L L+ N L
Sbjct: 87  QLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVF--DKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLR 350
           +P+ I      + L L +N L          L  L  L L  N L  +       L +L 
Sbjct: 22  VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 351 LLYLYRNELSGSIPQAI-GNLVELVSLLLGFNYFRGPIPKN-FKNLTNLVRVRMNQNNL 407
            L L  N+L  S+P  +   L +L  L L  N  +  +P   F  LT L  +R+ QN L
Sbjct: 80  YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 496 KLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHK 555
            L L  N L          LT L  L L  N+L +   G    L  + YLNLS N+    
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 556 IPTQFEKLQLQLSELDLSQNFLEGEIPSQICN-MESLVKLNLSYNQL 601
               F+KL  QL EL L+ N L+  +P  + + +  L  L L  NQL
Sbjct: 92  PNGVFDKL-TQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 32/167 (19%)

Query: 194 SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGN-VRN 252
           SVP   G       L L  NSL         +L  L+ L +  N L  ++P+ + N + +
Sbjct: 21  SVP--TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 253 LRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNS-NNLSILYLYSNQ 310
           L  L L +N+L  S+P  +   L  L  L L+ N+L   +P  + +    L  L LY NQ
Sbjct: 78  LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ 135

Query: 311 LSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357
           L  S+P  +      FD                  L +L+ ++L+ N
Sbjct: 136 LK-SVPDGV------FD-----------------RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 507 SLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQ 566
           S+P  I   T    LDL  N L +   G    L  +  L L  N+        F KL   
Sbjct: 21  SVPTGIPAQTTY--LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL-TS 77

Query: 567 LSELDLSQNFLEGEIPSQICNMESLVK---LNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
           L+ L+LS N L+  +P+ +   + L +   L L+ NQL       F+ +  L  + +  N
Sbjct: 78  LTYLNLSTNQLQ-SLPNGV--FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134

Query: 624 RLQ 626
           +L+
Sbjct: 135 QLK 137

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 51/369 (13%), Positives = 113/369 (30%), Gaps = 74/369 (20%)

Query: 273 NLRSLSNLDLSINRLNGVIPSSIG-----NSNNLSILYLYSNQLSGSIPKEIG-----NL 322
               +++LDLS+N L  +    +         +++ L L  N L      E+        
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 323 KCLFDLELSMNNLTGVIPSSIGNL-----RNLRLLYLYRNELSGSIPQAIGNLVELVSLL 377
             +  L LS N L+      +          + +L L  N+ S             +   
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP-- 137

Query: 378 LGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGN----ISEAFVGTYPTLSFLDLSHNNFH 433
                             ++  + +  N+L       + +        ++ L+L  NN  
Sbjct: 138 -----------------ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 434 ----GQISSDWGRFPQ-LGTLDFSVNNITGSIPPEIG-----NSSKLQVLNLSSNHIGGK 483
                +++      P  + +LD S N +      E+        + +  LNL  N + G 
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 484 IPMELGRL----SSLNKLILNKNQL-------FGSLPPEIGTLTELELLDLSENRLSNAI 532
               L  L      L  + L+ + +         +L      + ++ L+D +   +  + 
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 533 PGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLV 592
              + NL++            ++     +K Q  + +L++                + L 
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP---------------DELR 345

Query: 593 KLNLSYNQL 601
           +   +   L
Sbjct: 346 ESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 42/253 (16%), Positives = 86/253 (33%), Gaps = 45/253 (17%)

Query: 392 KNLTNLVRVRMNQNNLSGN----ISEAFVGTYPTLSFLDLSHNNFHGQ----ISSDWGRF 443
               ++  + ++ N+L       + +        ++ L+LS N    +    +       
Sbjct: 48  NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI 107

Query: 444 P-QLGTLDFSVNNITGSIPPEIG-----NSSKLQVLNLSSNHIGGKIPMELGRL-----S 492
           P  +  LD   N+ +     E         + +  LNL  N +G K   EL ++     +
Sbjct: 108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167

Query: 493 SLNKLILNKNQ--------LFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLK--- 541
           ++N L L  N         L   L     ++T L   DLS N L       L  +     
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSL---DLSANLLGLKSYAELAYIFSSIP 224

Query: 542 --VHYLNLSNNEFSHKIPTQFEKLQL---QLSELDLSQNFLEG-------EIPSQICNME 589
             V  LNL  N          + L+     L  + L  + ++         + +   N++
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 590 SLVKLNLSYNQLS 602
            ++ ++ +  ++ 
Sbjct: 285 KIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 60/314 (19%), Positives = 107/314 (34%), Gaps = 64/314 (20%)

Query: 108 KLQYLDLSANKLSGKIPPEIGQL-----SFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162
            +  LDLS N L      E+ Q      + ++ L+L  N L       L       +L+ 
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV-----QILAA 77

Query: 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQL-------IGSVPFFLGNLTNLVTLHLFNNSL 215
                            ++++L+LS N L       +            +  L L  N  
Sbjct: 78  IPA--------------NVTSLNLSGNFLSYKSSDELVKT--LAAIPFTITVLDLGWNDF 121

Query: 216 SG----FIPSTLGKLKC-LSNLNMSMNHLSGAIPSSIGNV-----RNLRSLFLYSNELSG 265
           S             L   +++LN+  N L       +  +      N+ SL L  N L+ 
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181

Query: 266 SIPKEIGNL-----RSLSNLDLSINRLNGVIPSSIG-----NSNNLSILYLYSNQLSGSI 315
               E+         S+++LDLS N L     + +        N++  L L  N L G  
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 316 PKEIGNL----KCLFDLELSMNNLTGV-------IPSSIGNLRNLRLLYLYRNELSGSIP 364
            + +  L    K L  + L  + +  +       + ++  N++ + L+     E+  S  
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301

Query: 365 QAIGNLVELVSLLL 378
             I NL+  +S   
Sbjct: 302 IPISNLIRELSGKA 315

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 56/303 (18%), Positives = 103/303 (33%), Gaps = 54/303 (17%)

Query: 180 SLSTLDLSLNQL-------IGSVPFFLGNLTNLVTLHLFNNSLS----GFIPSTLGKLKC 228
            +++LDLSLN L       +     F     ++ +L+L  NSL       +   L  +  
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQA--FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 229 -LSNLNMSMNHLSGAIPSSIGNV-----RNLRSLFLYSNELSGSIPKEIGNL-----RSL 277
            +++LN+S N LS      +          +  L L  N+ S     E          S+
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140

Query: 278 SNLDLSINRLNG----VIPSSIGNSN-NLSILYLYSNQLSGSIPKEIGNL-----KCLFD 327
           ++L+L  N L       +   +     N++ L L  N L+     E+          +  
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200

Query: 328 LELSMNNLTGVIPSSIG-----NLRNLRLLYLYRNELSGSIPQAIGNLVE----LVSLLL 378
           L+LS N L     + +         ++  L L  N L G   + +  L +    L ++ L
Sbjct: 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 379 GFNYFRGPIPKN-------FKNLTNLVRVRMNQNNLSG----NISEAFVGTYPTLSFLDL 427
            ++  +    +        F N+  ++ V  N   +       IS              L
Sbjct: 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSL 320

Query: 428 SHN 430
            + 
Sbjct: 321 LNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 31/151 (20%), Positives = 49/151 (32%), Gaps = 33/151 (21%)

Query: 466 NSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSE 525
               +  L+LS N++     +EL +  +                        +  L+LS 
Sbjct: 20  IPHGVTSLDLSLNNLYSISTVELIQAFANTP-------------------ASVTSLNLSG 60

Query: 526 NRLSNAIPGSLGNLLKV-----HYLNLSNNEFSHK----IPTQFEKLQLQLSELDLSQNF 576
           N L       L  +L         LNLS N  S+K    +      +   ++ LDL  N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 577 LEGEIPSQICNM-----ESLVKLNLSYNQLS 602
              +  S+          S+  LNL  N L 
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.1 bits (137), Expect = 9e-09
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 484 IPMELGRLSSLNKLILNKNQLFGSLPPE-IGTLTELELLDLSENRLSNAIPGSLGNLLKV 542
               L    +L +L +   Q    L    +  L EL  L + ++ L    P +     ++
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 543 HYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFL 577
             LNLS N          +   L L EL LS N L
Sbjct: 83  SRLNLSFNALESLSWKTVQ--GLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 171 IPPVIGNLISLSTLDLSLNQLIGSVPFF-LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL 229
               +    +L+ L +   Q +  +    L  L  L  L +  + L    P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 230 SNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL 263
           S LN+S N L  ++        +L+ L L  N L
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 25/102 (24%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 188 LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPS-TLGKLKCLSNLNMSMNHLSGAIPSS 246
                      L    NL  L++ N      +    L  L  L NL +  + L    P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 247 IGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288
                 L  L L  N L  S+  +     SL  L LS N L+
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPME-LGRLSSLNKLILNKNQLFGSLPPEIGT-LT 516
                +  +  L  L + +      + +  L  L  L  L + K+ L   + P+      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTP 80

Query: 517 ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552
            L  L+LS N L  ++       L +  L LS N  
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 526 NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQ-FEKLQLQLSELDLSQNFLEGEIPSQ 584
              +      L     +  L + N +    +  +    L  +L  L + ++ L   +   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLR-FVAPD 74

Query: 585 I-CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
                  L +LNLS+N L        + +  L  + +S N L 
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 7e-07
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 2/96 (2%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKE-IGNLRSLSNLDLSINRLNGVIPSSIGNSNN 300
                +    NL  L++ + +    +    +  L  L NL +  + L  V P +   +  
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 301 LSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLT 336
           LS L L  N L     K +  L  L +L LS N L 
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 99  IPPQISQLFKLQYLDLSANKLSGKIPPE-IGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ 157
               +     L  L +   +    +    +  L  L  L++  + L    P +     + 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 158 SLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL 191
           S L+L  N+L       +  L SL  L LS N L
Sbjct: 83  SRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 27/127 (21%)

Query: 308 SNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPS-SIGNLRNLRLLYLYRNELSGSIPQA 366
           +   +      +   + L +L +        +    +  L  LR L + ++ L   +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA-- 72

Query: 367 IGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLD 426
                                P  F     L R+ ++ N L     +   G   +L  L 
Sbjct: 73  ---------------------PDAFHFTPRLSRLNLSFNALESLSWKTVQG--LSLQELV 109

Query: 427 LSHNNFH 433
           LS N  H
Sbjct: 110 LSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 117 NKLSGKIPPEIGQLSFLSELSLYSNCLNGSIP-QSLGNLSKQSLLSLYNNSLSGYIPP-V 174
              +      +     L+EL + +      +  + L  L +   L++  + L  ++ P  
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75

Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSL 215
                 LS L+LS N L       +  L +L  L L  N L
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 6e-06
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 146 SIPQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQLIGSVPFFLGNLTN 204
                L      + L + N     ++    +  L  L  L +  + L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 205 LVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239
           L  L+L  N+L      T+  L  L  L +S N L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 78  SFSSFPDLLFLNLFNNELFGIIPPQ-ISQLFKLQYLDLSANKLSGKIPPEIGQ-LSFLSE 135
                 +L  L + N +    +  + +  L +L+ L +  + L   + P+       LS 
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSR 84

Query: 136 LSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL 167
           L+L  N L     +++  LS Q  L L  N L
Sbjct: 85  LNLSFNALESLSWKTVQGLSLQE-LVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 64  NLTTTSLNG-----TLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANK 118
           NLT   +        L+        +L  L +  + L  + P       +L  L+LS N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 119 LSGKIPPEIGQLSFLSELSLYSN 141
           L   +  +  Q   L EL L  N
Sbjct: 92  LE-SLSWKTVQGLSLQELVLSGN 113

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 13/138 (9%)

Query: 232 LNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN---LDLSINRLN 288
           L+  +  +   + +++  ++  + L L +N +      +I +L  + N   L L  N + 
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLIK 83

Query: 289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIP-SSIGNLR 347
             I +    ++ L  L++  NQ++ S+   I  L  L  L +S N +T       +  L 
Sbjct: 84  -KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140

Query: 348 NLRLLYLYRNELSGSIPQ 365
            L  L L  N L     +
Sbjct: 141 KLEDLLLAGNPLYNDYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 16/135 (11%)

Query: 473 LNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI---GTLTELELLDLSENRLS 529
           L+     I  K+   L  L +   L L+ N +      +I     +  L +L L  N + 
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRNLIK 83

Query: 530 NAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLE--GEIPSQICN 587
             I         +  L +S N+ +  + +  EKL   L  L +S N +   GEI  ++  
Sbjct: 84  K-IENLDAVADTLEELWISYNQIA-SL-SGIEKLV-NLRVLYMSNNKITNWGEI-DKLAA 138

Query: 588 MESLVKLNLSYNQLS 602
           ++ L  L L+ N L 
Sbjct: 139 LDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 494 LNKLILNKNQLFGSLPPEIGTLTELELLDL--SENRLSNAIPGSLGNLLKVHYLNLSNNE 551
           + K    K+ +      +    TE E ++L      +   +  +L  L    +L LS N 
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNN 59

Query: 552 FSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFED 611
              KI +    ++  L  L L +N ++ +I +     ++L +L +SYNQ++  +    E 
Sbjct: 60  IE-KI-SSLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEK 113

Query: 612 MHGLSSIDISYNRLQ 626
           +  L  + +S N++ 
Sbjct: 114 LVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 15/134 (11%)

Query: 85  LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLN 144
            + L+     +  +    +S L   ++L LS N +  KI   +  +  L  LSL  N + 
Sbjct: 27  KVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK 83

Query: 145 GSIPQSLGNLSKQSLLSLYNN---SLSGYIPPVIGNLISLSTLDLSLNQL--IGSVPFFL 199
             I            L +  N   SLSG     I  L++L  L +S N++   G +   L
Sbjct: 84  -KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEI-DKL 136

Query: 200 GNLTNLVTLHLFNN 213
             L  L  L L  N
Sbjct: 137 AALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 10/150 (6%)

Query: 133 LSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN--NSLSGYIPPVIGNLISLSTLDLSLNQ 190
           +++ +   + +     +     ++   + L+     +   +   +  L +   L LS N 
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNN 59

Query: 191 LIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNV 250
            I  +   L  + NL  L L  N +   I +       L  L +S N ++    S I  +
Sbjct: 60  -IEKISS-LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKL 114

Query: 251 RNLRSLFLYSNELSGSIPKEIGNLRSLSNL 280
            NLR L++ +N+++     EI  L +L  L
Sbjct: 115 VNLRVLYMSNNKITN--WGEIDKLAALDKL 142

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 38/182 (20%)

Query: 327 DLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGP 386
           +L   +  +   + +++  L+  + L L  N +   I  ++  +  L  L LG N     
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI--- 82

Query: 387 IPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQIS--SDWGRFP 444
             K  +NL  +                       TL  L +S+N    QI+  S   +  
Sbjct: 83  --KKIENLDAVA---------------------DTLEELWISYN----QIASLSGIEKLV 115

Query: 445 QLGTLDFSVNNIT--GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKN 502
            L  L  S N IT  G I   +    KL+ L L+ N +               +++    
Sbjct: 116 NLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174

Query: 503 QL 504
            L
Sbjct: 175 NL 176

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 54.2 bits (129), Expect = 7e-08
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 20/162 (12%)

Query: 458 GSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGT--- 514
             + P +     L  L +        + +      +L  L +    L  S+  +I     
Sbjct: 162 VDLSPVLDAMPLLNNLKIKG---TNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 515 --LTELELLDLSENRLSNAIPGSLGNLL------KVHYLNLSNNEFSHKIPTQFEKLQL- 565
             L +L L    E+   +        L        + +L + + E  + +   F +  + 
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 566 -QLSELDLSQNFLEGE----IPSQICNMESLVKLNLSYNQLS 602
            QL  +D+S   L  E    +   +  ++ L  +N+ YN LS
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 2e-06
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 18/160 (11%)

Query: 226 LKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG--NLRSLSNLDLS 283
           L  +  LN      +  +        NL+SL + S  L  S+ ++I   +L +L  L L 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 284 INRLNGVIPSSI---------GNSNNLSILYLYSNQLSGSIPKEIGN---LKCLFDLELS 331
           +   +      +             NL  L +   +    + +       L  L  +++S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 332 MNNLTGV----IPSSIGNLRNLRLLYLYRNELSGSIPQAI 367
              LT      +   +  +++L+ + +  N LS  + + +
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 8e-06
 Identities = 36/243 (14%), Positives = 78/243 (32%), Gaps = 30/243 (12%)

Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGN------LRSLSNLDLSINRLNGV 290
           + ++  I  +     +   LF    +        I        L ++  L+    +    
Sbjct: 125 SDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEIG--NLKCLFDLELSMNNLTGVIPSSIGNLR- 347
           +        NL  L + S  L  S+ ++I   +L  L  L L +          +   R 
Sbjct: 185 LSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244

Query: 348 --------NLRLLYLYRNELSGSIPQAIGN---LVELVSLLLGFNYFRG----PIPKNFK 392
                   NL+ L +   E    + +       L +L ++ +            +  +  
Sbjct: 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452
            + +L  + M  N LS  + +    + P    +D+S +    Q   D   +P +  L+  
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSLPMK--IDVSDS----QEYDDDYSYPMITELEHH 358

Query: 453 VNN 455
            ++
Sbjct: 359 HHH 361

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 19/151 (12%)

Query: 419 YPTLSFLDLSHNNFHGQISSD--WGRFPQLGTLD--FSVNNITGSIPPEI-------GNS 467
            P L  L++        +  D      P L  L     V +        +          
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 468 SKLQVLNLSSNHIGGKIPMELGR---LSSLNKLILNKNQL----FGSLPPEIGTLTELEL 520
             L+ L +        +         L  L  + ++   L       L   +  +  L+ 
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 521 LDLSENRLSNAIPGSLGNLLKVHYLNLSNNE 551
           +++  N LS+ +   L   L +  +++S+++
Sbjct: 312 INMKYNYLSDEMKKELQKSLPMK-IDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 3e-05
 Identities = 32/221 (14%), Positives = 70/221 (31%), Gaps = 38/221 (17%)

Query: 395 TNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVN 454
                +   +  +S             +  L+         +S      P L +L+    
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISG 203

Query: 455 NITGSIPPEIGNS--SKLQVLNL---SSNHIGGKIPMEL------GRLSSLNKLILNKNQ 503
            +  S+  +I  S    L+ L L     ++                R  +L  L +   +
Sbjct: 204 GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263

Query: 504 LFGSLPPEIGT---LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQF 560
               +         L +LE +D+S   L++     L + +             H      
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK---------IKH------ 308

Query: 561 EKLQLQLSELDLSQNFLEGEIPSQICNMESL-VKLNLSYNQ 600
                 L  +++  N+L  E+  ++   +SL +K+++S +Q
Sbjct: 309 ------LKFINMKYNYLSDEMKKELQ--KSLPMKIDVSDSQ 341

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 17/69 (24%), Positives = 30/69 (43%)

Query: 705 SQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDL 764
           S+   S     S          ++    +  ATN+FD ++ IG G  G +YK  L+    
Sbjct: 6   SKATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAK 65

Query: 765 IAVKKFNSQ 773
           +A+K+   +
Sbjct: 66  VALKRRTPE 74

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 449 LDFSVNNITGSIPPE--IGNSSKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILNKNQLF 505
           L  + N +   I  +   G    L  L L  N +   I        S + +L L +N++ 
Sbjct: 34  LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI- 90

Query: 506 GSLPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
             +  ++   L +L+ L+L +N++S  +PGS  +L  +  LNL++N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 184 LDLSLNQL--IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241
           L L+ N+L  I S   F G L +LV L L  N L+G  P+       +  L +  N +  
Sbjct: 34  LLLNDNELGRISSDGLF-GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 242 AIPSSI-GNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSIN 285
            I + +   +  L++L LY N++S  +      +L SL++L+L+ N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 62  GINLTTTSLNGTLDEFS-------FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDL 114
            I L TT L    +E         F   P L+ L L  N+L GI P        +Q L L
Sbjct: 26  DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85

Query: 115 SANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQ-SLGNLSKQSLLSLYNN 165
             NK+  +I  ++   L  L  L+LY N ++  +   S  +L+  + L+L +N
Sbjct: 86  GENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 135 ELSLYSNCLNGSIPQSL-GNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIG 193
           EL L  N L       L G L     L L  N L+G  P        +  L L  N++  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-K 91

Query: 194 SVP--FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN 237
            +    FLG L  L TL+L++N +S  +P +   L  L++LN++ N
Sbjct: 92  EISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 208 LHLFNNSLSGFIPS-TLGKLKCLSNLNMSMNHLSGAIPSSI-GNVRNLRSLFLYSNELSG 265
           L L +N L         G+L  L  L +  N L+  I  +      +++ L L  N++  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 266 SIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSN 309
            I  ++   L  L  L+L  N+++ V+P S  + N+L+ L L SN
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 507 SLPPEIGTLTELELLDLSENRLSNAIP-GSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQL 565
            +P +I   T    L L++N L      G  G L  +  L L  N+ +   P  FE    
Sbjct: 22  EIPRDIPLHTTE--LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS- 78

Query: 566 QLSELDLSQNFLEGEIPSQICN-MESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
            + EL L +N ++ EI +++   +  L  LNL  NQ+S  +P  FE ++ L+S++++ N
Sbjct: 79  HIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNL 349
           IP  I    + + L L  N+L       + G L  L  LEL  N LTG+ P++     ++
Sbjct: 23  IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 350 RLLYLYRNELSGSIPQAI-GNLVELVSLLLGFNYFRGPIPKN-FKNLTNLVRVRMNQN 405
           + L L  N++   I   +   L +L +L L  N     +    F++L +L  + +  N
Sbjct: 81  QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTE 517
           S+P  I   S    L L SN +         +L+ L KL L++NQ+  SLP  +   LT+
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTK 77

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNE 551
           L +L L EN+L +   G    L ++  L L  N+
Sbjct: 78  LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNS-NN 300
           ++P+ I +  +   L L SN+L          L  L+ L LS N++   +P  + +    
Sbjct: 21  SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 301 LSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357
           L+ILYL+ N+L  S+P  +   L  L +L L  N L  V       L +L+ ++L+ N
Sbjct: 78  LTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 449 LDFSVNNITGSIPPEIGNS-SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
           L+   N +  S+P  + +  ++L  L+LS N I         +L+ L  L L++N+L  S
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QS 90

Query: 508 LPPEI-GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
           LP  +   LT+L+ L L  N+L +   G    L  +  + L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 28/128 (21%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGS 146
           L L +N+L  +      +L +L  L LS N++   +P  +  +L+ L+ L L+ N L  S
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-S 90

Query: 147 IPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPF-FLGNLTNL 205
           +P                         V   L  L  L L  NQL  SVP      LT+L
Sbjct: 91  LP-----------------------NGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSL 126

Query: 206 VTLHLFNN 213
             + L  N
Sbjct: 127 QKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP---FFLGNLTNLVTLHLFNNSLS 216
           L L +N L      V   L  L+ L LS NQ+  S+P   F    LT L  L+L  N L 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVF--DKLTKLTILYLHENKLQ 89

Query: 217 GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSN 261
                   KL  L  L +  N L          + +L+ ++L++N
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 203 TNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNVRNLRSLFLYSN 261
           ++   L L +N L         KL  L+ L++S N +  ++P  +   +  L  L+L+ N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86

Query: 262 ELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQ 310
           +L  S+P  +   L  L  L L  N+L  V         +L  ++L++N 
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 63  INLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK 122
           + L     N    E   + F +L FL+L N  L  +    + +L KL+ L+LS N++ G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86

Query: 123 IPPEIGQLSFLSELSLYSNCLNG-SIPQSLGNLSKQSLLSLYNN---SLSGYIPPVIGNL 178
           +     +L  L+ L+L  N L   S  + L  L     L L+N    +L+ Y   V   L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 179 ISLSTLD 185
             L+ LD
Sbjct: 147 PQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
            LD   +N  G I         L+ L+L +  +   +   L +L  L KL L++N++FG 
Sbjct: 30  VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGG 86

Query: 508 LPPEIGTLTELELLDLSENRLSN-AIPGSLGNLLKVHYLNLSNNEFSHK 555
           L      L  L  L+LS N+L + +    L  L  +  L+L N E ++ 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 9/142 (6%)

Query: 147 IPQSLGNLSKQSLLSLY---NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLT 203
           I   L N +  ++  L      S  G I  +    ++L  L L     + SV   L  L 
Sbjct: 14  IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSN-LPKLP 71

Query: 204 NLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG-AIPSSIGNVRNLRSLFLYSN- 261
            L  L L  N + G +     KL  L++LN+S N L   +    +  +  L+SL L++  
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 262 --ELSGSIPKEIGNLRSLSNLD 281
              L+         L  L+ LD
Sbjct: 132 VTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 466 NSSKLQVLNLSSNHIG-GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLS 524
             + ++ L L +     GKI        +L  L L    L  S+   +  L +L+ L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSN-LPKLPKLKKLELS 79

Query: 525 ENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQL--QLSELDLSQN 575
           ENR+   +      L  + +LNLS N+      +  E L+    L  LDL   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 273 NLRSLSNLDLSINRLN-GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELS 331
              ++  L L   + N G I        NL  L L +  L  S+   +  L  L  LELS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 332 MNNLTGVIPSSIGNLRNLRLLYLYRNELSG-SIPQAIGNLVELVSLLLGFN 381
            N + G +      L NL  L L  N+L   S  + +  L  L SL L   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 6/117 (5%)

Query: 389 KNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGT 448
           +    +  LV +   ++N      E     +  L FL L +        S+  + P+L  
Sbjct: 21  RTPAAVRELV-LDNCKSNDGKI--EGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKK 75

Query: 449 LDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGG-KIPMELGRLSSLNKLILNKNQL 504
           L+ S N I G +         L  LNLS N +        L +L  L  L L   ++
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 25/120 (20%)

Query: 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNN 300
           G I        NL  L L +  L  S+   +  L  L  L+LS NR+ G +        N
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 301 LSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS 360
           L+ L L  N+L      +I  L+ L                    L  L+ L L+  E++
Sbjct: 97  LTHLNLSGNKLK-----DISTLEPL------------------KKLECLKSLDLFNCEVT 133

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 80  SSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLY 139
             F +L FL+  N  L  I    + +L KL+ L+LS N++SG +     +   L+ L+L 
Sbjct: 39  DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 140 SNCLNG-SIPQSLGNLSKQSLLSLYNN---SLSGYIPPVIGNLISLSTLD 185
            N +   S  + L  L     L L+N    +L+ Y   V   L  L+ LD
Sbjct: 97  GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
            LD S +N  G +        +L+ L+  +  +   I   L +L+ L KL L+ N++ G 
Sbjct: 23  VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGG 79

Query: 508 LPPEIGTLTELELLDLSENRLSN-AIPGSLGNLLKVHYLNLSNNEFSHK 555
           L         L  L+LS N++ + +    L  L  +  L+L N E ++ 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 466 NSSKLQVLNLSSNHIG-GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLS 524
             S ++ L L ++    GK+         L  L      L  S+   +  L +L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIAN-LPKLNKLKKLELS 72

Query: 525 ENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQL--QLSELDLSQN 575
           +NR+S  +         + +LNLS N+      +  E L+    L  LDL   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 160 LSLYNNSLS-GYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF 218
           L L N+  + G +  +      L  L       + S+   L  L  L  L L +N +SG 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIAN-LPKLNKLKKLELSDNRVSGG 79

Query: 219 IPSTLGKLKCLSNLNMSMNHLSG-AIPSSIGNVRNLRSLFLYSNELS 264
           +     K   L++LN+S N +   +    +  + NL+SL L++ E++
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 514 TLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLS 573
            + EL L +   N     + G      ++ +L+  N   +  I     KL  +L +L+LS
Sbjct: 18  DVKELVLDNSRSNEGK--LEGLTDEFEELEFLSTINVGLT-SI-ANLPKLN-KLKKLELS 72

Query: 574 QNFLEGEIPSQICNMESLVKLNLSYNQLSGF-IPNCFEDMHGLSSIDISYN 623
            N + G +        +L  LNLS N++         + +  L S+D+   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 389 KNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS--DWGRFPQL 446
           +   ++  LV +  +++N      E     +  L FL   +      ++S  +  +  +L
Sbjct: 14  RTPSDVKELV-LDNSRSNEGKL--EGLTDEFEELEFLSTINVG----LTSIANLPKLNKL 66

Query: 447 GTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGG-KIPMELGRLSSLNKLILNKN 502
             L+ S N ++G +         L  LNLS N I        L +L +L  L L   
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 273 NLRSLSNLDLSINRLN-GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELS 331
               +  L L  +R N G +         L  L   +  L+ SI   +  L  L  LELS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 332 MNNLTGVIPSSIGNLRNLRLLYLYRNELSG-SIPQAIGNLVELVSLLLGFN 381
            N ++G +        NL  L L  N++   S  + +  L  L SL L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 27/136 (19%)

Query: 225 KLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSI 284
            +K L   N   N   G +         L  L   +  L+ SI   +  L  L  L+LS 
Sbjct: 18  DVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73

Query: 285 NRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIG 344
           NR++G +        NL+ L L  N++     K++  ++ L                   
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKI-----KDLSTIEPL------------------K 110

Query: 345 NLRNLRLLYLYRNELS 360
            L NL+ L L+  E++
Sbjct: 111 KLENLKSLDLFNCEVT 126

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 12/41 (29%), Positives = 25/41 (60%)

Query: 729 TYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKK 769
           +  ++  A+++F  +  +G+G  G +YK +L    L+AVK+
Sbjct: 21  SLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKR 61

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 149 QSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTL 208
               N  +   L L    +   I  +   L     +D S N+ I  +      L  L TL
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKLDG-FPLLRRLKTL 69

Query: 209 HLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG-AIPSSIGNVRNLRSLFLYSNELS 264
            + NN +          L  L+ L ++ N L        + ++++L  L +  N ++
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 13/131 (9%)

Query: 449 LDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQL--FG 506
           +  +   I  +   +  N+ + + L+L    I   I      L   + +  + N++    
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 507 SLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ-- 564
             P     L  L+ L ++ NR+     G    L  +  L L+NN          + L   
Sbjct: 59  GFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASL 112

Query: 565 LQLSELDLSQN 575
             L+ L + +N
Sbjct: 113 KSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME-LGRLSSLNKLILNKNQ 503
           +   LD     I   I        +   ++ S N I     ++    L  L  L++N N+
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTLLVNNNR 75

Query: 504 LFGSLPPEIGTLTELELLDLSENRLSN-AIPGSLGNLLKVHYLNLSNNEFSHK 555
           +          L +L  L L+ N L        L +L  + YL +  N  ++K
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 13/110 (11%)

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVG---TYPTLSFLDLSHNNFHGQISS--DWGRFPQLG 447
             TN VR R  + +L G           T      +D S N    +I     +    +L 
Sbjct: 14  QYTNAVRDR--ELDLRGYKIPVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLK 67

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKL 497
           TL  + N I             L  L L++N +      +L  L+SL  L
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSL--VELGDLDPLASLKSL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 101 PQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL 160
            Q +   + + LDL   K+   I      L     +    N +   +      L +   L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQL--IGSVPFFLGNLTNLVTLHLFNN 213
            + NN +      +   L  L+ L L+ N L  +G +   L +L +L  L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD-PLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 521 LDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGE 580
           + L+   +  A      N ++   L+L   +    I         Q   +D S N +  +
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYK-IPVI-ENLGATLDQFDAIDFSDNEIR-K 56

Query: 581 IPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
           +      +  L  L ++ N++        + +  L+ + ++ N L 
Sbjct: 57  L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 515 LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQ 574
                 LDL   ++   I      L +   ++ S+NE   K+   F  L+ +L  L ++ 
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLR-RLKTLLVNN 73

Query: 575 NFLEGEIPSQICNMESLVKLNLSYNQLSGF-IPNCFEDMHGLSSIDISYN 623
           N +          +  L +L L+ N L      +    +  L+ + I  N
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-GTLTE 517
           S+P  I   +  QVL L  N I    P    RL+ L +L L+ NQL   LP  +   LT+
Sbjct: 23  SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQ 79

Query: 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550
           L  L L++N+L +   G+  NL  + ++ L NN
Sbjct: 80  LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 58/378 (15%), Positives = 110/378 (29%), Gaps = 57/378 (15%)

Query: 132 FLSELSLYSN-CLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQ 190
            L  L    N  +   +   + NL            L      V+     L  L      
Sbjct: 2   LLVGLLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE- 60

Query: 191 LIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKL-----KCLSNLNMSMNHLSGAIPS 245
              +  F    L++L  L+L    ++    + +  +       L  +N++   L  A   
Sbjct: 61  -FQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR 119

Query: 246 SIGNV-RNLRSLFLYSNELSGSIPKEIG-----NLRSLSNLDLSINRLNGV----IPSSI 295
           ++  V    R L L  N L     K++      +   ++ L LS N L       +   +
Sbjct: 120 TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179

Query: 296 GNSNNLSILYLYSNQLS----GSIPKEIGNLKCLFDLELSMNNLTGV----IPSSIGNLR 347
             + +++ L L    L       +  ++   + L +L ++ N         +  +     
Sbjct: 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP 239

Query: 348 NLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNL 407
           +L LL+LY NELS    Q + +L                     +    +V        +
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLG-----------------GAAEGGARVVVSLTEGTAV 282

Query: 408 SGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS 467
           S   S         L+  D +    H           +L   D   +      P      
Sbjct: 283 SEYWSVILSEVQRNLNSWDRARVQRH----------LELLLRDLEDSRGATLNPWRKAQL 332

Query: 468 SK----LQVLNLSSNHIG 481
            +    ++ L       G
Sbjct: 333 LRVEGEVRALLEQLGSSG 350

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 728 ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773
           +  + +   +          +G  G ++KA+L +E  +AVK F  Q
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEY-VAVKIFPIQ 58

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 43/375 (11%), Positives = 107/375 (28%), Gaps = 38/375 (10%)

Query: 80  SSFPDLLFLNLFNNELFGIIPPQISQLFK----LQYLDLSANKLSGKIPPEIGQL----S 131
           +    +  L +  +         + +L +    L+ L+    + +   P ++  +     
Sbjct: 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220

Query: 132 FLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL 191
            L  + +  +     +       +        + +    +P    NL+    L       
Sbjct: 221 SLVSVKV-GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 192 IG--SVPFFLGNLTNLVTLHL-FNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248
           +G   +P        +  L L +    +    + + K   L  L          +     
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 249 NVRNLRSLFLYSNELSGSIPKEIG------------NLRSLSNLDLSINRLNGVIPSSIG 296
             + L+ L +        +  E G              + L  + + ++ +         
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT-------- 391

Query: 297 NSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYR 356
              N S+  + +   +    + +   +     +L ++N    +      LR         
Sbjct: 392 ---NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448

Query: 357 NELSGSIPQAIG-NLVELVSLLLGFNYFRGP-IPKNFKNLTNLVRVRMNQNNLSGNISEA 414
             L+      IG     +  +LLG+       + +  +   NL ++ M     S     A
Sbjct: 449 G-LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507

Query: 415 FVGTYPTLSFLDLSH 429
            V   P+L +L +  
Sbjct: 508 AVTKLPSLRYLWVQG 522

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 728 ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773
               +     ++      IG+G  G++YK  L     +AVK F+  
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSLDERP-VAVKVFSFA 47

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 34/109 (31%)

Query: 110 QYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS 168
           Q L L+ N+++ K+ P +   L  L +L   SN L              ++         
Sbjct: 36  QRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKL-------------TAI--------- 72

Query: 169 GYIPP-VIGNLISLSTLDLSLNQLIGSVP---FFLGNLTNLVTLHLFNN 213
              P  V   L  L+ LDL+ N L  S+P   F   NL +L  ++L+NN
Sbjct: 73  ---PTGVFDKLTQLTQLDLNDNHL-KSIPRGAF--DNLKSLTHIYLYNN 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 6e-04
 Identities = 62/444 (13%), Positives = 123/444 (27%), Gaps = 131/444 (29%)

Query: 410 NISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS--VNNITGSIPPEIGNS 467
            + + FV        L +++      I ++  R P + T  +    + +           
Sbjct: 77  EMVQKFVEE-----VLRINYKFLMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQV----F 126

Query: 468 SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTL---------TEL 518
           +K  V                 RL    KL   +  L   L P    L         T +
Sbjct: 127 AKYNV----------------SRLQPYLKL---RQALL-ELRPAKNVLIDGVLGSGKTWV 166

Query: 519 ELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLE 578
            L      ++   +        K+ +LNL N      +    +KL  Q+     S++   
Sbjct: 167 ALDVCLSYKVQCKMDF------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 579 GEIPSQICNMESLVKLNLSYNQ----------------LSGFIPNC-----------FED 611
             I  +I ++++ ++  L                     + F  +C            + 
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 612 MHGLSSIDISYNRLQGPVP-------FSKA----FRDAPAEALQGN---RGLCG----DD 653
           +   ++  IS +     +          K      +D P E L  N     +      D 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 654 KGLS------SCKAFRSSRRASVKKLIIMILLPLLGVLALSI------ISIGLL----FN 697
                     +C    +   +S+  L       +     LS+      I   LL    F+
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFD 398

Query: 698 SRRT---KMVSQTGQSSPANASGFLSTLTLEGKITYDQIIRATNDFDEEY-----CIGKG 749
             ++    +V++  + S        ST+++         +      + EY      +   
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISI-----PSIYLELKVKLENEYALHRSIVDH- 452

Query: 750 AQGSLYKA--KLQSEDLIAVKKFN 771
                Y       S+DLI      
Sbjct: 453 -----YNIPKTFDSDDLIPPYLDQ 471

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	775
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.67
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.51
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.93
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	97.73
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	97.69
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	97.49
4aoj_A	329	High affinity nerve growth factor receptor; transf	97.31
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	97.29
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	97.22
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	97.06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.88
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	96.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.7
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	96.65
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	96.6
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	96.53
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	96.52
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	96.47
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	96.43
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	96.37
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	96.36
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	96.35
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	96.33
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	96.32
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	96.22
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	96.02
3soc_A	322	Activin receptor type-2A; structural genomics cons	95.98
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	95.97
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	95.89
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	95.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.84
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	95.84
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	95.82
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	95.73
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	95.68
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	95.63
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	95.62
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	95.62
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	95.61
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	95.61
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	95.57
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	95.53
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	95.52
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	95.46
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	95.44
3an0_A	340	Dual specificity mitogen-activated protein kinase;	95.42
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	95.41
3uqc_A	286	Probable conserved transmembrane protein; structur	95.4
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	95.36
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	95.3
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	95.27
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	95.21
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	95.2
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	95.19
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	95.18
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	95.18
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	95.16
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	95.12
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	95.09
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	95.08
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	95.08
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	95.07
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	95.06
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	95.05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	95.03
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	95.01
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	94.97
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	94.96
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	94.93
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	94.93
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	94.87
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	94.86
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	94.85
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	94.84
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	94.83
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	94.82
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	94.8
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	94.77
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	94.75
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	94.73
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	94.73
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	94.69
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	94.69
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	94.67
2dyl_A	318	Dual specificity mitogen-activated protein kinase	94.66
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	94.65
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	94.64
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	94.63
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	94.58
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	94.58
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	94.56
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	94.55
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	94.49
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	94.47
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	94.46
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	94.45
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	94.42
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	94.41
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	94.37
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	94.3
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	94.3
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	94.29
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	94.28
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	94.24
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	94.22
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	94.2
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	94.2
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	94.19
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	94.14
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	94.13
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	94.11
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	94.07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	94.05
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	94.05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	94.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	93.99
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	93.96
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	93.92
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	93.91
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	93.89
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	93.86
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	93.85
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	93.76
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	93.61
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	93.58
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	93.54
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	93.46
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	93.43
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	93.4
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	93.35
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	93.27
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	92.98
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	92.89
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	92.82
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	92.79
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	92.75
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	92.59
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	92.11
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	91.6
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	91.57
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	91.55
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	88.54
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	83.67

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.8e-86  Score=774.50  Aligned_cols=644  Identities=32%  Similarity=0.502  Sum_probs=547.3

Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccc---cCc-
Q 043943            1 FSLPVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGT---LDE-   76 (775)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~---~~~-   76 (775)
                      |.++++++.++|++||++||+++. ||. .+.+|+      .+.+||.|.||+|+ .++|+.++|++..+.|.   ++. 
T Consensus         2 ~~~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~------~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~   72 (768)
T 3rgz_A            2 FQASPSQSLYREIHQLISFKDVLP-DKN-LLPDWS------SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSS   72 (768)
T ss_dssp             ------CCHHHHHHHHHHHHTTCS-CTT-SSTTCC------TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHH
T ss_pred             CcCccccCCHHHHHHHHHHHhhCC-Ccc-cccCCC------CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChh
Confidence            456777778999999999999998 476 889997      46789999999998 79999999999999886   441 


Q ss_pred             ---------------------cccCCCCCCCEEECCCCCCcccCcc--cccCCCCCCEEeCcCCCCCCCCchhc-cCCCC
Q 043943           77 ---------------------FSFSSFPDLLFLNLFNNELFGIIPP--QISQLFKLQYLDLSANKLSGKIPPEI-GQLSF  132 (775)
Q Consensus        77 ---------------------~~~~~l~~L~~L~ls~~~~~~~~~~--~~~~l~~L~~L~ls~n~~~~~~p~~~-~~l~~  132 (775)
                                           ..+.++++|++|+|++|.+.+.+|.  .++++++|++|++++|.+.+..|..+ .++++
T Consensus        73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  152 (768)
T 3rgz_A           73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS  152 (768)
T ss_dssp             TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred             HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence                                 3566777788888888887777776  77778888888888887776666654 67778


Q ss_pred             CCEEECCCccccccCccc---ccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEE
Q 043943          133 LSELSLYSNCLNGSIPQS---LGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLH  209 (775)
Q Consensus       133 L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  209 (775)
                      |++|++++|.+++..|..   +.++++|++|++++|.+.+..+.  ..+++|++|++++|.+.+..|. ++++++|++|+
T Consensus       153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~  229 (768)
T 3rgz_A          153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD  229 (768)
T ss_dssp             CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred             CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEE
Confidence            888888888777766665   67777888888888777765543  6788888888888888776766 88888888888


Q ss_pred             cccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCC-CCCCEEEcccCccc
Q 043943          210 LFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNL-RSLSNLDLSINRLN  288 (775)
Q Consensus       210 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~  288 (775)
                      +++|.+++..|..+..+++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.++
T Consensus       230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~  307 (768)
T 3rgz_A          230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY  307 (768)
T ss_dssp             CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred             CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence            8888888888888888888888888888888777664  77888888888888888888877664 88888888888888


Q ss_pred             ccCCccCCCCCCCCeeeccCccccCCCCcc-CCCCCCCCeeeCcCCcCcCccCCcCCCCC-cCcEEEccCCcCCCCchhh
Q 043943          289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKE-IGNLKCLFDLELSMNNLTGVIPSSIGNLR-NLRLLYLYRNELSGSIPQA  366 (775)
Q Consensus       289 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~  366 (775)
                      +..|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|++.+.+|..+..++ +|+.|++++|.+.+.+|..
T Consensus       308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~  387 (768)
T 3rgz_A          308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN  387 (768)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred             CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence            888888888888888888888888777765 78888888888888888888888777776 8888888888888777777


Q ss_pred             ccC--CCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCC
Q 043943          367 IGN--LVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP  444 (775)
Q Consensus       367 ~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  444 (775)
                      +..  +++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+ +.+++|+.|++++|.+.+.+|..+..++
T Consensus       388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~  466 (768)
T 3rgz_A          388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVK  466 (768)
T ss_dssp             TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence            666  7789999999999988888889999999999999999988888776 7889999999999999988999999999


Q ss_pred             CCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECC
Q 043943          445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLS  524 (775)
Q Consensus       445 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls  524 (775)
                      +|++|++++|++++.+|..+..+++|++|++++|++.+.+|.++..+++|++|+|++|++++.+|..+..+++|+.|+++
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCcc---------------------------------------------------------------------
Q 043943          525 ENRLSNAIPGS---------------------------------------------------------------------  535 (775)
Q Consensus       525 ~n~l~~~~~~~---------------------------------------------------------------------  535 (775)
                      +|+++|.+|..                                                                     
T Consensus       547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~  626 (768)
T 3rgz_A          547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP  626 (768)
T ss_dssp             SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred             CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence            99888766643                                                                     


Q ss_pred             -ccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCC
Q 043943          536 -LGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHG  614 (775)
Q Consensus       536 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  614 (775)
                       +..+++|+.|||++|+++|.+|..+..+. +|+.|+|++|+++|.+|..|+.+++|+.|||++|+++|.+|..+..+++
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~  705 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM  705 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred             hhhccccccEEECcCCcccccCCHHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence             34467899999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeCCCCcccccCCCCCcCCCCCccccCCCcCCCCCCCCCCCCCCc
Q 043943          615 LSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAF  662 (775)
Q Consensus       615 L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~~~~~~c~~~  662 (775)
                      |++||+++|+++|.+|...+|.+++..+|.||+.+||.+  ...|...
T Consensus       706 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~--l~~C~~~  751 (768)
T 3rgz_A          706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP--LPRCDPS  751 (768)
T ss_dssp             CSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT--SCCCCSC
T ss_pred             CCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC--CcCCCCC
Confidence            999999999999999999999999999999999999954  2377644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6e-69  Score=626.74  Aligned_cols=562  Identities=33%  Similarity=0.475  Sum_probs=518.0

Q ss_pred             CCCEEEEEcCCCCCccccCcc--ccCCCCCCCEEECCCCCCcccCcccc-cCCCCCCEEeCcCCCCCCCCchh---ccCC
Q 043943           57 DERVVGINLTTTSLNGTLDEF--SFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANKLSGKIPPE---IGQL  130 (775)
Q Consensus        57 ~~~v~~l~l~~~~~~~~~~~~--~~~~l~~L~~L~ls~~~~~~~~~~~~-~~l~~L~~L~ls~n~~~~~~p~~---~~~l  130 (775)
                      -.+++.++|+++.+.|.++ .  .+.++++|++|++++|.+.+..|..+ .++++|++|++++|.+++..|..   +.++
T Consensus        99 l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l  177 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC  177 (768)
T ss_dssp             CTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred             CCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence            3578999999999999887 5  78999999999999999998888766 89999999999999999888877   8899


Q ss_pred             CCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEc
Q 043943          131 SFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHL  210 (775)
Q Consensus       131 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  210 (775)
                      ++|++|++++|.+.+..|  +.++++|++|++++|.+.+.+|. +.++++|++|++++|.+++..|..+..+++|++|++
T Consensus       178 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  254 (768)
T 3rgz_A          178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI  254 (768)
T ss_dssp             TTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred             CCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence            999999999999987665  38999999999999999988887 999999999999999999999999999999999999


Q ss_pred             ccccCccccCccCCCCCCCCEEEcccccccccCCccccCC-CCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccc
Q 043943          211 FNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNV-RNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG  289 (775)
Q Consensus       211 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  289 (775)
                      ++|.+.+..|..  .+++|++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..|..+++|++|++++|.+++
T Consensus       255 s~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  332 (768)
T 3rgz_A          255 SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG  332 (768)
T ss_dssp             CSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             CCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence            999999877765  89999999999999999999988775 999999999999999999999999999999999999998


Q ss_pred             cCCcc-CCCCCCCCeeeccCccccCCCCccCCCCC-CCCeeeCcCCcCcCccCCcCCC--CCcCcEEEccCCcCCCCchh
Q 043943          290 VIPSS-IGNSNNLSILYLYSNQLSGSIPKEIGNLK-CLFDLELSMNNLTGVIPSSIGN--LRNLRLLYLYRNELSGSIPQ  365 (775)
Q Consensus       290 ~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~  365 (775)
                      .+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|++.+.+|..+..  +++|++|++++|.+++.+|.
T Consensus       333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  412 (768)
T 3rgz_A          333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP  412 (768)
T ss_dssp             ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred             cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence            88865 89999999999999999999999888887 9999999999999988887776  88999999999999999999


Q ss_pred             hccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCC
Q 043943          366 AIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQ  445 (775)
Q Consensus       366 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  445 (775)
                      .+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ ..+++|++|++++|++.+.+|..+..+++
T Consensus       413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  491 (768)
T 3rgz_A          413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTN  491 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence            99999999999999999999999999999999999999999999888877 78999999999999999999999999999


Q ss_pred             CCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCc-------------
Q 043943          446 LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI-------------  512 (775)
Q Consensus       446 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-------------  512 (775)
                      |++|++++|++++.+|.++..+++|++|++++|++.+.+|..+..+++|++|++++|+++|.+|..+             
T Consensus       492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~  571 (768)
T 3rgz_A          492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA  571 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred             CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999987777543             


Q ss_pred             ---------------------------------------------------------cCCCCCCEEECCCCcccccCCcc
Q 043943          513 ---------------------------------------------------------GTLTELELLDLSENRLSNAIPGS  535 (775)
Q Consensus       513 ---------------------------------------------------------~~l~~L~~L~ls~n~l~~~~~~~  535 (775)
                                                                               ..+++|+.||+++|+++|.+|..
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~  651 (768)
T 3rgz_A          572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE  651 (768)
T ss_dssp             SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred             cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence                                                                     33578999999999999999999


Q ss_pred             ccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 043943          536 LGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGL  615 (775)
Q Consensus       536 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L  615 (775)
                      ++.++.|+.|+|++|+++|.+|..+..+. +|+.|||++|+++|.+|..++.+++|++|++++|+++|.+|.. ..+.++
T Consensus       652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~  729 (768)
T 3rgz_A          652 IGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETF  729 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGS
T ss_pred             HhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccC
Confidence            99999999999999999999999999999 9999999999999999999999999999999999999999975 233455


Q ss_pred             CEEeCCCCcccc
Q 043943          616 SSIDISYNRLQG  627 (775)
Q Consensus       616 ~~l~ls~n~l~~  627 (775)
                      ....+.+|+--|
T Consensus       730 ~~~~~~gN~~Lc  741 (768)
T 3rgz_A          730 PPAKFLNNPGLC  741 (768)
T ss_dssp             CGGGGCSCTEEE
T ss_pred             CHHHhcCCchhc
Confidence            566778887443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.2e-61  Score=557.47  Aligned_cols=568  Identities=24%  Similarity=0.242  Sum_probs=264.3

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|++++|.++...+..|.++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            34555555555555444444555555555555555555444545555555555555555554333334555555555555


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCC--CCCCCCEEEccccccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLG--KLKCLSNLNMSMNHLS  240 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~  240 (775)
                      ++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            55555544444555555555555555555544444455555555555555555444433322  3345555555555555


Q ss_pred             ccCCccccCCCCCcEEEcccccCCCCCCccc---cCCCCCCEEEcccCcccccCCccCCCCCC--CCeeeccCccccCCC
Q 043943          241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEI---GNLRSLSNLDLSINRLNGVIPSSIGNSNN--LSILYLYSNQLSGSI  315 (775)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~  315 (775)
                      +..|..+..+++|+.|++.++.+.+.....+   ...++|++|++++|.+++..|.++..++.  |++|++++|.+++..
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            4444445555555555544444322111100   01244455555555544444444444432  555555555544444


Q ss_pred             CccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCC-----Cch----hhccCCCCCcEEEeccceeccc
Q 043943          316 PKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG-----SIP----QAIGNLVELVSLLLGFNYFRGP  386 (775)
Q Consensus       316 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~  386 (775)
                      +..+..+++|++|++++|++.+..|..+..+++|+.|++++|...+     .+|    ..+..+++|+.|++++|.+.+.
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence            4444445555555555555544444444445555555554433221     111    1344444555555555555444


Q ss_pred             CCccCcCCCcccceecccccccccc-chhhhc--cCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCC-c
Q 043943          387 IPKNFKNLTNLVRVRMNQNNLSGNI-SEAFVG--TYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIP-P  462 (775)
Q Consensus       387 ~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~  462 (775)
                      .+..+.++++|+.|++++|.+.... +...+.  ..++|+.|++++|++.+..+..|..+++|+.|++++|.+++.+| .
T Consensus       345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  424 (680)
T 1ziw_A          345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ  424 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred             ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence            4444445555555555444422111 111001  11345555555555554444445555555555555555444333 3


Q ss_pred             cccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCc--ccCCcCccCCCCCCEEECCCCcccccCCccccCcC
Q 043943          463 EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF--GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLL  540 (775)
Q Consensus       463 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~  540 (775)
                      .|..+++|++|++++|++.+..+..+..+++|+.|++++|.+.  +.+|..+..+++|+.|++++|++++..+..|.+++
T Consensus       425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  504 (680)
T 1ziw_A          425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE  504 (680)
T ss_dssp             GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence            4445555555555555544444444444555555555555443  23444444555555555555555544444445555


Q ss_pred             CCCEEEccCCcCccCCc--------hhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCC
Q 043943          541 KVHYLNLSNNEFSHKIP--------TQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDM  612 (775)
Q Consensus       541 ~L~~L~Ls~n~l~~~~~--------~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l  612 (775)
                      +|++|+|++|++++..+        ..+..++ +|+.|++++|+++...+..|.++++|+.|++++|++++..+..|..+
T Consensus       505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l  583 (680)
T 1ziw_A          505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ  583 (680)
T ss_dssp             TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccCEEeCCCCCccccchhhccCCcchhhcCCC-CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence            55555555554443211        1133333 45555555555543222334455555555555555554444444445


Q ss_pred             CCCCEEeCCCCcccccCCCCC--cCCCCCccccCCCcCCCC
Q 043943          613 HGLSSIDISYNRLQGPVPFSK--AFRDAPAEALQGNRGLCG  651 (775)
Q Consensus       613 ~~L~~l~ls~n~l~~~~p~~~--~~~~~~~~~~~gn~~lc~  651 (775)
                      ++|+.|++++|++++..|..-  .+..+....+.|||..|.
T Consensus       584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            555555555555444333110  123333344445554443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.6e-60  Score=549.85  Aligned_cols=572  Identities=24%  Similarity=0.252  Sum_probs=508.0

Q ss_pred             CCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEE
Q 043943           57 DERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL  136 (775)
Q Consensus        57 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L  136 (775)
                      ..+++.++++++.+.+..+ ..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|+++++|++|
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence            3589999999999987544 779999999999999999999999999999999999999999996666679999999999


Q ss_pred             ECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccC--CCCCccEEEccccc
Q 043943          137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLG--NLTNLVTLHLFNNS  214 (775)
Q Consensus       137 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~  214 (775)
                      ++++|.+.+..|..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            9999999988778999999999999999999999999999999999999999999877766543  56899999999999


Q ss_pred             CccccCccCCCCCCCCEEEcccccccccCCcccc---CCCCCcEEEcccccCCCCCCccccCCCC--CCEEEcccCcccc
Q 043943          215 LSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG---NVRNLRSLFLYSNELSGSIPKEIGNLRS--LSNLDLSINRLNG  289 (775)
Q Consensus       215 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~~~  289 (775)
                      +++..+..+..+++|+.|++.++.+.......+.   ..++|+.|++++|.+++..|..|..++.  |++|++++|.+++
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~  262 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV  262 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred             ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence            9999999999999999999999887543222211   3478999999999999988888888754  9999999999999


Q ss_pred             cCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCc-----cC----CcCCCCCcCcEEEccCCcCC
Q 043943          290 VIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV-----IP----SSIGNLRNLRLLYLYRNELS  360 (775)
Q Consensus       290 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~----~~~~~~~~L~~L~l~~n~l~  360 (775)
                      ..+..|..+++|++|++++|.+++..+..+..+++|++|++++|...+.     +|    ..+..+++|++|++++|.+.
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~  342 (680)
T 1ziw_A          263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP  342 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence            9889999999999999999999999999999999999999998765431     22    36788999999999999999


Q ss_pred             CCchhhccCCCCCcEEEeccceeccc--CCccCcCC--CcccceeccccccccccchhhhccCCCCcEEeCCCccceeec
Q 043943          361 GSIPQAIGNLVELVSLLLGFNYFRGP--IPKNFKNL--TNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQI  436 (775)
Q Consensus       361 ~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  436 (775)
                      +..+..+.++++|+.|++++|.+...  ....+..+  ++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.+.+
T Consensus       343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~  421 (680)
T 1ziw_A          343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-SWLGHLEVLDLGLNEIGQEL  421 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCEEEC
T ss_pred             CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-hCCCCCCEEeCCCCcCcccc
Confidence            98889999999999999999975432  22334333  589999999999998887766 78999999999999998876


Q ss_pred             C-cCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCcc--CcCChhhhcCCCCCEEEcCCCcCcccCCcCcc
Q 043943          437 S-SDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG--GKIPMELGRLSSLNKLILNKNQLFGSLPPEIG  513 (775)
Q Consensus       437 ~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~  513 (775)
                      + ..|..+++|++|++++|++.+..+..|..+++|++|++++|.+.  +..|..+..+++|+.|++++|++++..+..+.
T Consensus       422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  501 (680)
T 1ziw_A          422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE  501 (680)
T ss_dssp             CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence            6 68999999999999999999888899999999999999999986  56788999999999999999999988888899


Q ss_pred             CCCCCCEEECCCCcccccCC--------ccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccc
Q 043943          514 TLTELELLDLSENRLSNAIP--------GSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI  585 (775)
Q Consensus       514 ~l~~L~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l  585 (775)
                      .+++|++|++++|.+++..+        ..+..+++|+.|+|++|+++...+..+..++ +|+.|++++|++++..+..|
T Consensus       502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~  580 (680)
T 1ziw_A          502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLPASVF  580 (680)
T ss_dssp             TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred             cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc-CcceeECCCCCCCcCCHhHh
Confidence            99999999999999987532        2478899999999999999955455688888 99999999999998778888


Q ss_pred             cCCCCCcEEeCCCCcCcccCCcccc-CCCCCCEEeCCCCcccccCCC
Q 043943          586 CNMESLVKLNLSYNQLSGFIPNCFE-DMHGLSSIDISYNRLQGPVPF  631 (775)
Q Consensus       586 ~~l~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~l~ls~n~l~~~~p~  631 (775)
                      ..+++|+.|++++|++++..|..+. .+++|+.+++++|++.|.|+.
T Consensus       581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9999999999999999999988887 789999999999999999985

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.6e-57  Score=515.69  Aligned_cols=526  Identities=19%  Similarity=0.197  Sum_probs=397.3

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      +++++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            47899999999999888889999999999999999999888999999999999999999999888899999999999999


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCC--EEEccccccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS--NLNMSMNHLS  240 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~l~~n~~~  240 (775)
                      ++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+  .|++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            99999988788899999999999999998875444455589999999999999988888888899998  8899999998


Q ss_pred             ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943          241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG  320 (775)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  320 (775)
                      +..|..+. ..+|+.|++++|.   .++..+..+.+++...+....+..           +....+....+.+     +.
T Consensus       193 ~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~-----------~~~~~i~~~~~~~-----l~  252 (606)
T 3t6q_A          193 GIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED-----------MDDEDISPAVFEG-----LC  252 (606)
T ss_dssp             EECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT-----------SCCCCCCGGGGGG-----GG
T ss_pred             ccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhcc-----------ccccccChhHhch-----hh
Confidence            77776654 4688999988875   234444455554444433222211           1111111111110     00


Q ss_pred             CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccce
Q 043943          321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRV  400 (775)
Q Consensus       321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  400 (775)
                      . .+|++|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus       253 ~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          253 E-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             G-SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             c-CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence            0 13444444444444444444444455555555555444 344444445555555555555554444455555555555


Q ss_pred             eccccccccccchhhhccCCCCcEEeCCCccceeec--CcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCC
Q 043943          401 RMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQI--SSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN  478 (775)
Q Consensus       401 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n  478 (775)
                      ++++|.+.+.++...+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence            555555554454444466777777777777777665  667788888888888888888777888888888888888888


Q ss_pred             CccCcCCh-hhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCccccc---CCccccCcCCCCEEEccCCcCcc
Q 043943          479 HIGGKIPM-ELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNA---IPGSLGNLLKVHYLNLSNNEFSH  554 (775)
Q Consensus       479 ~l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~  554 (775)
                      ++.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.   .+..+..+++|++|++++|++++
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence            88776554 377888888888888888888888888888899999999888762   33568888999999999999998


Q ss_pred             CCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCC
Q 043943          555 KIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS  632 (775)
Q Consensus       555 ~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~  632 (775)
                      ..|..+..++ +|+.|++++|++++..|..+..++.| .|++++|++++.+|..+..+++|+.+++++|++.|.++..
T Consensus       491 ~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  566 (606)
T 3t6q_A          491 IDQHAFTSLK-MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI  566 (606)
T ss_dssp             ECTTTTTTCT-TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred             cChhhhcccc-CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence            8888888888 99999999999999999999999999 9999999999999999999999999999999999988743

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.2e-56  Score=506.98  Aligned_cols=517  Identities=21%  Similarity=0.212  Sum_probs=383.7

Q ss_pred             CCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEE
Q 043943           58 ERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELS  137 (775)
Q Consensus        58 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~  137 (775)
                      ..++.++++++.+.+..+ ..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|+++++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            579999999999987655 7899999999999999999999999999999999999999999988899999999999999


Q ss_pred             CCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCcc--EEEcccccC
Q 043943          138 LYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLV--TLHLFNNSL  215 (775)
Q Consensus       138 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~--~L~l~~n~l  215 (775)
                      +++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+  .|++++|.+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            999999987788899999999999999999986655666699999999999999988888899999999  899999999


Q ss_pred             ccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCC-----CCCccccCCC--CCCEEEcccCccc
Q 043943          216 SGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG-----SIPKEIGNLR--SLSNLDLSINRLN  288 (775)
Q Consensus       216 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~--~L~~L~l~~n~~~  288 (775)
                      .+..+..+.. .+|++|++++|..   .+..+..+.+++...+....+.+     ..+..+..+.  +|++|++++|.++
T Consensus       192 ~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~  267 (606)
T 3t6q_A          192 AGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF  267 (606)
T ss_dssp             CEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred             CccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence            9888777655 6899999999862   33344455555444443322221     1111122221  4555555555555


Q ss_pred             ccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhcc
Q 043943          289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIG  368 (775)
Q Consensus       289 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  368 (775)
                      +..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.++.   
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---  343 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT---  343 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS---
T ss_pred             ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch---
Confidence            544444555555555555555554 3444445555555555555555544444444455555555555544433322   


Q ss_pred             CCCCCcEEEeccceecccCCccCcCCCcccceecccccccccc--chhhhccCCCCcEEeCCCccceeecCcCcCCCCCC
Q 043943          369 NLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNI--SEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQL  446 (775)
Q Consensus       369 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  446 (775)
                                          ..+..+++|+.|++++|.+.+..  +..+ ..+++|++|++++|.+.+..+..+..+++|
T Consensus       344 --------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  402 (606)
T 3t6q_A          344 --------------------GCLENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFKECPQL  402 (606)
T ss_dssp             --------------------STTTTCTTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred             --------------------hhhhccCcCCEEECCCCccccccCcchhc-ccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence                                22455555555555555555443  2222 567778888888888777777778888888


Q ss_pred             CEEEcccCcccccCCc-cccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCccc---CCcCccCCCCCCEEE
Q 043943          447 GTLDFSVNNITGSIPP-EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS---LPPEIGTLTELELLD  522 (775)
Q Consensus       447 ~~L~l~~n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~---~~~~~~~l~~L~~L~  522 (775)
                      ++|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.   .+..+..+++|+.|+
T Consensus       403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred             CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence            8888888888766554 477888888888888888877777788888888888888888752   234577888888888


Q ss_pred             CCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCc
Q 043943          523 LSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLS  602 (775)
Q Consensus       523 ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  602 (775)
                      +++|.+++..|..+..+++|++|+|++|++++..|..+..+. .| .|++++|++++..|..+..+++|+.|++++|++.
T Consensus       483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC-SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc-cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence            888888888888888888888888888888888888888877 78 8888888888888888888888888888888887


Q ss_pred             ccCC
Q 043943          603 GFIP  606 (775)
Q Consensus       603 ~~~p  606 (775)
                      +..+
T Consensus       561 c~c~  564 (606)
T 3t6q_A          561 CTCS  564 (606)
T ss_dssp             CSGG
T ss_pred             ccCC
Confidence            6543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.2e-55  Score=500.50  Aligned_cols=522  Identities=22%  Similarity=0.223  Sum_probs=409.1

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            78999999999999888889999999999999999999888888999999999999999999888999999999999999


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCCC----EEEcccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS----NLNMSMN  237 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n  237 (775)
                      ++|.+.+..+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++|+    +|++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            9999998888889999999999999999875 5688899999999999999999988888887776665    7999999


Q ss_pred             cccccCCccccCCCCCcEEEcccccCC-CCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCC
Q 043943          238 HLSGAIPSSIGNVRNLRSLFLYSNELS-GSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP  316 (775)
Q Consensus       238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  316 (775)
                      .+.+..+..+... +|+.|++++|.++ +..|..+.++++|+.+++..+.+....        .+..+.       ...+
T Consensus       192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~~~-------~~~~  255 (606)
T 3vq2_A          192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEIFE-------PSIM  255 (606)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSCCC-------GGGG
T ss_pred             CcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------cccccC-------hHHh
Confidence            9886666555544 8999999998876 356677888888888887655443210        010000       0000


Q ss_pred             ccCCCCCCCCeeeC-cCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCC
Q 043943          317 KEIGNLKCLFDLEL-SMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT  395 (775)
Q Consensus       317 ~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  395 (775)
                      ..+..+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+ +.+| .+ .++
T Consensus       256 ~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~  328 (606)
T 3vq2_A          256 EGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLP  328 (606)
T ss_dssp             TTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCS
T ss_pred             hhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCC
Confidence            111111 2344444 44455555554 5556666666666666542 33 555566666666666666 4445 33 666


Q ss_pred             cccceeccccccccccchhhhccCCCCcEEeCCCccceee--cCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEE
Q 043943          396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQ--ISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVL  473 (775)
Q Consensus       396 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  473 (775)
                      +|+.|++++|...+..   .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+++ +|..+..+++|++|
T Consensus       329 ~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L  404 (606)
T 3vq2_A          329 FLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL  404 (606)
T ss_dssp             SCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEE
T ss_pred             ccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCee
Confidence            6677777666444333   125677888888888888766  36777888888888888888875 55778888899999


Q ss_pred             EccCCCccCcCC-hhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccc-cCCccccCcCCCCEEEccCCc
Q 043943          474 NLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSN-AIPGSLGNLLKVHYLNLSNNE  551 (775)
Q Consensus       474 ~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~  551 (775)
                      ++++|++.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..+++|++|+|++|+
T Consensus       405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  484 (606)
T 3vq2_A          405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ  484 (606)
T ss_dssp             ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence            999998887777 678888999999999999988888888899999999999999987 478888999999999999999


Q ss_pred             CccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCC-CCCEEeCCCCcccccCC
Q 043943          552 FSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMH-GLSSIDISYNRLQGPVP  630 (775)
Q Consensus       552 l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~-~L~~l~ls~n~l~~~~p  630 (775)
                      +++..|..+..++ +|+.|++++|++++.+|..|+.+++|+.|++++|+++. +|..+..++ +|+.+++++|++.|.++
T Consensus       485 l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          485 LEQISWGVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCEECTTTTTTCT-TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCccChhhhcccc-cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCc
Confidence            9988888888888 99999999999998889999999999999999999984 666688886 59999999999999998


Q ss_pred             CCC
Q 043943          631 FSK  633 (775)
Q Consensus       631 ~~~  633 (775)
                      ..+
T Consensus       563 ~~~  565 (606)
T 3vq2_A          563 HQK  565 (606)
T ss_dssp             THH
T ss_pred             cHH
Confidence            653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.8e-55  Score=512.29  Aligned_cols=522  Identities=24%  Similarity=0.232  Sum_probs=383.4

Q ss_pred             CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCC-chhccCCCCCCEEECCCccccccCcccccCCCCCCE
Q 043943           81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKI-PPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSL  159 (775)
Q Consensus        81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  159 (775)
                      -.+++++|+|++|.+++..+..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            4578999999999999888889999999999999999655454 778999999999999999999888999999999999


Q ss_pred             EEcccCcCcccCCcc--cCCCCCCCEEeccCCcCcccCC-cccCCCCCccEEEcccccCccccCccCCCC--CCCCEEEc
Q 043943          160 LSLYNNSLSGYIPPV--IGNLISLSTLDLSLNQLIGSVP-FFLGNLTNLVTLHLFNNSLSGFIPSTLGKL--KCLSNLNM  234 (775)
Q Consensus       160 L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l  234 (775)
                      |++++|.+++..+..  +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+..+..+  ++|+.|++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            999999998766554  8889999999999998876654 468889999999999999888888888777  88999999


Q ss_pred             ccccccccCCccccCCCC------CcEEEcccccCCCCCCccccC---CCCCCEEEcccCcccccCCccCCCCCCCCeee
Q 043943          235 SMNHLSGAIPSSIGNVRN------LRSLFLYSNELSGSIPKEIGN---LRSLSNLDLSINRLNGVIPSSIGNSNNLSILY  305 (775)
Q Consensus       235 ~~n~~~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~---l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  305 (775)
                      ++|.+.+..|..+..+.+      |+.|++++|.+++..+..+..   ..+++.|.++.+.....               
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------  246 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------  246 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------
T ss_pred             CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------
Confidence            999888877777766665      888888888887777766553   25677777764332211               


Q ss_pred             ccCccccCCCCccCCCC--CCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEecccee
Q 043943          306 LYSNQLSGSIPKEIGNL--KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYF  383 (775)
Q Consensus       306 l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  383 (775)
                      +..+.+.+.....+..+  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l  326 (844)
T 3j0a_A          247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL  326 (844)
T ss_dssp             SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred             ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence            01111221222223332  4566666666666665566666666666666666666655555666666666666666666


Q ss_pred             cccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCcc
Q 043943          384 RGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE  463 (775)
Q Consensus       384 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  463 (775)
                      .+..+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+++     +..+++|+.|++++|+++ .+|..
T Consensus       327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~  399 (844)
T 3j0a_A          327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI  399 (844)
T ss_dssp             SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC
T ss_pred             CccCHHHhcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-ccccc
Confidence            66556666666666666666666655444433 566777777777776653     223677777777777776 33432


Q ss_pred             ccCCCCCcEEEccCCCccCcCC-hhhhcCCCCCEEEcCCCcCcccCCc-CccCCCCCCEEECCCCccc-----ccCCccc
Q 043943          464 IGNSSKLQVLNLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPP-EIGTLTELELLDLSENRLS-----NAIPGSL  536 (775)
Q Consensus       464 ~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~ls~n~l~-----~~~~~~~  536 (775)
                         ..+++.|++++|++.+... ..+..+++|+.|+|++|++++..+. .+..+++|+.|++++|.+.     +..+..|
T Consensus       400 ---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~  476 (844)
T 3j0a_A          400 ---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF  476 (844)
T ss_dssp             ---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred             ---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence               4567888888888775432 2345778888888888888754432 3455778888888888876     3344567


Q ss_pred             cCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCC
Q 043943          537 GNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLS  616 (775)
Q Consensus       537 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~  616 (775)
                      ..+++|+.|+|++|++++..|..+..++ +|+.|+|++|++++..|..+.  ++|+.|++++|++++.+|..|.   +|+
T Consensus       477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~  550 (844)
T 3j0a_A          477 EGLSHLQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLS  550 (844)
T ss_dssp             SCBCCEECCCCCHHHHTTCCTTSSSSCC-SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCC
T ss_pred             cCcccccEEECCCCcccccChhHccchh-hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcC
Confidence            7888888888888888887777777777 888888888888877776665  7899999999999999887764   788


Q ss_pred             EEeCCCCcccccCCCCC
Q 043943          617 SIDISYNRLQGPVPFSK  633 (775)
Q Consensus       617 ~l~ls~n~l~~~~p~~~  633 (775)
                      .+++++|++.|.|+..+
T Consensus       551 ~l~l~~Np~~C~c~~~~  567 (844)
T 3j0a_A          551 VLDITHNKFICECELST  567 (844)
T ss_dssp             EEEEEEECCCCSSSCCS
T ss_pred             EEEecCCCcccccccHH
Confidence            99999999999988643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.4e-54  Score=491.08  Aligned_cols=520  Identities=23%  Similarity=0.237  Sum_probs=414.5

Q ss_pred             CCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEE
Q 043943           57 DERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL  136 (775)
Q Consensus        57 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L  136 (775)
                      ..+++.++++++.+.+..+ ..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  109 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL  109 (606)
T ss_dssp             CTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred             CCCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence            3579999999999987655 789999999999999999999889999999999999999999998889999999999999


Q ss_pred             ECCCccccccCcccccCCCCCCEEEcccCcCcc-cCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCcc----EEEcc
Q 043943          137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSG-YIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLV----TLHLF  211 (775)
Q Consensus       137 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~l~  211 (775)
                      ++++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+.+|+    +|+++
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~  189 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS  189 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence            999999998777889999999999999999987 5699999999999999999999988888787766654    89999


Q ss_pred             cccCccccCccCCCCCCCCEEEccccccc-ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccccc
Q 043943          212 NNSLSGFIPSTLGKLKCLSNLNMSMNHLS-GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV  290 (775)
Q Consensus       212 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  290 (775)
                      +|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+..        .+..+       ...
T Consensus       190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~~-------~~~  253 (606)
T 3vq2_A          190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEIF-------EPS  253 (606)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSCC-------CGG
T ss_pred             CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------ccccc-------ChH
Confidence            999998877777665 9999999999886 466778899999999998766544211        11100       000


Q ss_pred             CCccCCCCCCCCeeec-cCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccC
Q 043943          291 IPSSIGNSNNLSILYL-YSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGN  369 (775)
Q Consensus       291 ~~~~l~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  369 (775)
                      .+..+..+ .++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .
T Consensus       254 ~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~  326 (606)
T 3vq2_A          254 IMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-D  326 (606)
T ss_dssp             GGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-C
T ss_pred             Hhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-C
Confidence            11111111 2334444 34444444443 5555555555555555543 23 455555666666666655 3444 23 5


Q ss_pred             CCCCcEEEeccceecccCCccCcCCCcccceecccccccccc--chhhhccCCCCcEEeCCCccceeecCcCcCCCCCCC
Q 043943          370 LVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNI--SEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG  447 (775)
Q Consensus       370 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  447 (775)
                      +++|+.|++++|...+..  .+..+++|+.|++++|.+.+..  +..+ ..+++|++|++++|.+.+ ++..+..+++|+
T Consensus       327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~  402 (606)
T 3vq2_A          327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSD-LGTNSLRHLDLSFNGAII-MSANFMGLEELQ  402 (606)
T ss_dssp             CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHH-HCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred             CCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhh-ccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence            566666666665433322  4556677777777777766553  4444 778899999999999876 457889999999


Q ss_pred             EEEcccCcccccCC-ccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcc-cCCcCccCCCCCCEEECCC
Q 043943          448 TLDFSVNNITGSIP-PEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFG-SLPPEIGTLTELELLDLSE  525 (775)
Q Consensus       448 ~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~ls~  525 (775)
                      +|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++
T Consensus       403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  482 (606)
T 3vq2_A          403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK  482 (606)
T ss_dssp             EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence            99999999998877 688999999999999999999899999999999999999999987 4788899999999999999


Q ss_pred             CcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCC-CCcEEeCCCCcCccc
Q 043943          526 NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNME-SLVKLNLSYNQLSGF  604 (775)
Q Consensus       526 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~ls~n~l~~~  604 (775)
                      |.+++..|..+..+++|++|+|++|++++.+|..+..++ +|+.|++++|+++ .+|..+..++ +|+.|++++|++...
T Consensus       483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT-TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC-cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence            999999999999999999999999999998899999988 9999999999999 6777798887 699999999999865


Q ss_pred             CC
Q 043943          605 IP  606 (775)
Q Consensus       605 ~p  606 (775)
                      .+
T Consensus       561 c~  562 (606)
T 3vq2_A          561 CE  562 (606)
T ss_dssp             ST
T ss_pred             Cc
Confidence            44

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1e-54  Score=495.02  Aligned_cols=503  Identities=18%  Similarity=0.263  Sum_probs=316.9

Q ss_pred             CCCcHHHHHHHHHHHhhcCcCCC-------CcCCCCCCCCCCCCCCCCCcc---cceeeCCCCCEEEEEcCCCCCccccC
Q 043943            6 SSDSTEEARALLKWKTSLQIHSR-------SLLPSWTLSPVNATKKNLCAW---SGIYCNHDERVVGINLTTTSLNGTLD   75 (775)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~w~~~~~~~~~~~~c~w---~gv~c~~~~~v~~l~l~~~~~~~~~~   75 (775)
                      .+....|++||.++++++..++-       ....+|.      .+.+||.|   .||+|+..++|+.|+|+++++.|.+|
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~------~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp   98 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN------FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP   98 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC------CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEEC
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC------CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCC
Confidence            34446799999999999865211       1223565      56899999   99999888999999999999999999


Q ss_pred             ccccCCCCCCCEEECCCCCC------cc------cCcccccCCCCCCEEeCcCCCCCCCCchhccC-CCCCCEEECCCcc
Q 043943           76 EFSFSSFPDLLFLNLFNNEL------FG------IIPPQISQLFKLQYLDLSANKLSGKIPPEIGQ-LSFLSELSLYSNC  142 (775)
Q Consensus        76 ~~~~~~l~~L~~L~ls~~~~------~~------~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~  142 (775)
                       ..++++++|++|+|++|.+      .+      .+|...  +..|+ ++++++.+.+.+|..+.. +..+..+++....
T Consensus        99 -~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~  174 (636)
T 4eco_A           99 -DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS  174 (636)
T ss_dssp             -GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred             -hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence             8999999999999999976      22      233322  44566 777777776666655542 1122222222111


Q ss_pred             ccccCcccccCCCCCCEEEcc--cCcCcccCCcccCCCCCCCEEeccCCcCccc-----------------CCcccC--C
Q 043943          143 LNGSIPQSLGNLSKQSLLSLY--NNSLSGYIPPVIGNLISLSTLDLSLNQLIGS-----------------VPFFLG--N  201 (775)
Q Consensus       143 ~~~~~~~~~~~l~~L~~L~l~--~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~  201 (775)
                      +..      .....++.+.+.  .|.+++ +|..+.++++|++|++++|.+++.                 +|..++  +
T Consensus       175 ~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~  247 (636)
T 4eco_A          175 IKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN  247 (636)
T ss_dssp             CCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred             ccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc
Confidence            110      000111111111  234444 444555555555555555555443                 555555  6


Q ss_pred             CCCccEEEcccccCccccCccCCCCCCCCEEEccccc-ccc-cCCccccCC------CCCcEEEcccccCCCCCCc--cc
Q 043943          202 LTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH-LSG-AIPSSIGNV------RNLRSLFLYSNELSGSIPK--EI  271 (775)
Q Consensus       202 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l  271 (775)
                      +++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+      ++|++|++++|.++ .+|.  .+
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l  326 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL  326 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred             cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence            6666666666666666666666666666666666665 655 555555554      66666666666666 5665  66


Q ss_pred             cCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCC-CCeeeCcCCcCcCccCCcCCCCC--c
Q 043943          272 GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKC-LFDLELSMNNLTGVIPSSIGNLR--N  348 (775)
Q Consensus       272 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~--~  348 (775)
                      ..+++|++|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++  +
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  403 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV  403 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred             ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence            666666666666666666666 6666666666666666666 55666666666 777777766666 4555555433  6


Q ss_pred             CcEEEccCCcCCCCchhhcc-------CCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccC--
Q 043943          349 LRLLYLYRNELSGSIPQAIG-------NLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTY--  419 (775)
Q Consensus       349 L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--  419 (775)
                      |+.|++++|.+.+.+|..+.       .+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+...  
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~  482 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE  482 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence            67777777776666666665       5566777777777766433333455677777777777776 3333332322  


Q ss_pred             -----CCCcEEeCCCccceeecCcCcC--CCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCC
Q 043943          420 -----PTLSFLDLSHNNFHGQISSDWG--RFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLS  492 (775)
Q Consensus       420 -----~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~  492 (775)
                           ++|+.|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|++|++++|+             
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~-------------  547 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR-------------  547 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB-------------
T ss_pred             cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc-------------
Confidence                 38999999999998 6777776  89999999999999987 78888889999999996554             


Q ss_pred             CCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCc
Q 043943          493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFS  553 (775)
Q Consensus       493 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  553 (775)
                           ++++|++.+.+|..+..+++|++|++++|++ +.+|..+.  ++|+.|+|++|++.
T Consensus       548 -----~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          548 -----DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             -----CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             -----ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence                 2344444444555555555555555555555 23343332  45555555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.7e-53  Score=496.12  Aligned_cols=517  Identities=23%  Similarity=0.213  Sum_probs=384.1

Q ss_pred             CCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccC-cccccCCCCCCEEeCcCCCCCCCCc
Q 043943           46 LCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGII-PPQISQLFKLQYLDLSANKLSGKIP  124 (775)
Q Consensus        46 ~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-~~~~~~l~~L~~L~ls~n~~~~~~p  124 (775)
                      .|.|..|.+ ...+++.|+|+++.+.+..+ ..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|
T Consensus        13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCCSSCCCS-SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCCC-CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            357888888 67899999999999987666 78999999999999999665554 7889999999999999999998889


Q ss_pred             hhccCCCCCCEEECCCccccccCccc--ccCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEeccCCcCcccCCcccCC
Q 043943          125 PEIGQLSFLSELSLYSNCLNGSIPQS--LGNLSKQSLLSLYNNSLSGYIP-PVIGNLISLSTLDLSLNQLIGSVPFFLGN  201 (775)
Q Consensus       125 ~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  201 (775)
                      ..|.++++|++|+|++|.+.+..|..  |.++++|++|++++|.+.+..+ ..|.++++|++|++++|.+.+..+..+..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            99999999999999999999866655  9999999999999999988765 57999999999999999999888888877


Q ss_pred             C--CCccEEEcccccCccccCccCCCCCC------CCEEEcccccccccCCccccCC---CCCcEEEcccccC-------
Q 043943          202 L--TNLVTLHLFNNSLSGFIPSTLGKLKC------LSNLNMSMNHLSGAIPSSIGNV---RNLRSLFLYSNEL-------  263 (775)
Q Consensus       202 l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~-------  263 (775)
                      +  ++|+.|++++|.+.+..+..+..+++      |++|++++|.+.+..+..+...   ..++.|.+..+..       
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~  250 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH  250 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence            7  89999999999999888887777766      9999999999988877766543   5788888874332       


Q ss_pred             --CCCCCccccCC--CCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCcc
Q 043943          264 --SGSIPKEIGNL--RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVI  339 (775)
Q Consensus       264 --~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  339 (775)
                        .+..+..|..+  ++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..
T Consensus       251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY  330 (844)
T ss_dssp             SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred             ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence              22222223332  45666666666665555555556666666666666665555555555556666666666555555


Q ss_pred             CCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccC
Q 043943          340 PSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTY  419 (775)
Q Consensus       340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  419 (775)
                      +..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++                        +.      ..+
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~i------~~~  380 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT------------------------TI------HFI  380 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC------------------------CC------SSC
T ss_pred             HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC------------------------cc------cCC
Confidence            555555555555555555555444444555555555555555443                        21      114


Q ss_pred             CCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccC-CccccCCCCCcEEEccCCCccCcCCh-hhhcCCCCCEE
Q 043943          420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSI-PPEIGNSSKLQVLNLSSNHIGGKIPM-ELGRLSSLNKL  497 (775)
Q Consensus       420 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L  497 (775)
                      ++|+.|++++|++.. +|.   ...+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|
T Consensus       381 ~~L~~L~l~~N~l~~-l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L  456 (844)
T 3j0a_A          381 PSIPDIFLSGNKLVT-LPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL  456 (844)
T ss_dssp             CSCSEEEEESCCCCC-CCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBC
T ss_pred             CCcchhccCCCCccc-ccc---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccc
Confidence            556666666666652 222   1456777777777776542 22355777888888888887754432 34557788888


Q ss_pred             EcCCCcCc-----ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEEC
Q 043943          498 ILNKNQLF-----GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDL  572 (775)
Q Consensus       498 ~L~~n~~~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~L  572 (775)
                      ++++|.+.     +..+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+.   ++|+.|++
T Consensus       457 ~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~---~~L~~L~L  533 (844)
T 3j0a_A          457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP---ANLEILDI  533 (844)
T ss_dssp             EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC---SCCCEEEE
T ss_pred             cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh---ccccEEEC
Confidence            88888876     34455678888999999999999988888888999999999999999876665554   38999999


Q ss_pred             cCCcCcccCCccccCCCCCcEEeCCCCcCccc
Q 043943          573 SQNFLEGEIPSQICNMESLVKLNLSYNQLSGF  604 (775)
Q Consensus       573 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~  604 (775)
                      ++|++++.+|..|.   +|+.|++++|++...
T Consensus       534 s~N~l~~~~~~~~~---~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          534 SRNQLLAPNPDVFV---SLSVLDITHNKFICE  562 (844)
T ss_dssp             EEECCCCCCSCCCS---SCCEEEEEEECCCCS
T ss_pred             CCCcCCCCChhHhC---CcCEEEecCCCcccc
Confidence            99999988887664   788999999988764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.8e-52  Score=478.28  Aligned_cols=486  Identities=18%  Similarity=0.225  Sum_probs=376.8

Q ss_pred             CCCCCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCC--Ccc------------cceeeCCCCCEEEEEcCCCC
Q 043943            4 PVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNL--CAW------------SGIYCNHDERVVGINLTTTS   69 (775)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--c~w------------~gv~c~~~~~v~~l~l~~~~   69 (775)
                      +.+++..+|++||++||+++.+ |     +|+...++. ..++  |.|            .||.|+..++|+.|+|++++
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~-~-----~W~~~~~~~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~  334 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDG-K-----NWRYYSGTI-NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFG  334 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTG-G-----GCCCCCSSC-SSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTC
T ss_pred             cccccchHHHHHHHHHHHHcCC-C-----CCCcCCCcc-cccCCccccccccccccccCcCceEecCCCCEEEEECccCC
Confidence            3445567899999999999965 4     898433221 2344  999            99999988999999999999


Q ss_pred             CccccCccccCCCCCCCEEEC-CCCCCcccCcccc---------------------------------------------
Q 043943           70 LNGTLDEFSFSSFPDLLFLNL-FNNELFGIIPPQI---------------------------------------------  103 (775)
Q Consensus        70 ~~~~~~~~~~~~l~~L~~L~l-s~~~~~~~~~~~~---------------------------------------------  103 (775)
                      +.|.+| ..++++++|++|+| ++|.+.|..+...                                             
T Consensus       335 L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~  413 (876)
T 4ecn_A          335 AKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE  413 (876)
T ss_dssp             CEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred             CCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence            999999 89999999999999 8887766522110                                             


Q ss_pred             ------cCCCCCCEEeCcC--CCCCCCCchhccCCCCCCEEECCCccccc-----------------cCccccc--CCCC
Q 043943          104 ------SQLFKLQYLDLSA--NKLSGKIPPEIGQLSFLSELSLYSNCLNG-----------------SIPQSLG--NLSK  156 (775)
Q Consensus       104 ------~~l~~L~~L~ls~--n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~~~--~l~~  156 (775)
                            .....++.+.+..  |.+++ +|..|+++++|++|+|++|.+++                 .+|..++  ++++
T Consensus       414 ~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~  492 (876)
T 4ecn_A          414 MKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD  492 (876)
T ss_dssp             SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred             ccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence                  1122333344433  66776 88899999999999999999998                 3888887  9999


Q ss_pred             CCEEEcccCcCcccCCcccCCCCCCCEEeccCCc-Ccc-cCCcccCC-------CCCccEEEcccccCccccCc--cCCC
Q 043943          157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQ-LIG-SVPFFLGN-------LTNLVTLHLFNNSLSGFIPS--TLGK  225 (775)
Q Consensus       157 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~-------l~~L~~L~l~~n~l~~~~~~--~l~~  225 (775)
                      |++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.       +++|+.|++++|.++ .+|.  .+.+
T Consensus       493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~  571 (876)
T 4ecn_A          493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK  571 (876)
T ss_dssp             CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT
T ss_pred             CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc
Confidence            9999999999999999999999999999999998 887 67765544       459999999999999 6777  8999


Q ss_pred             CCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCC-CCEEEcccCcccccCCccCCCCCC--CC
Q 043943          226 LKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRS-LSNLDLSINRLNGVIPSSIGNSNN--LS  302 (775)
Q Consensus       226 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~l~~l~~--L~  302 (775)
                      +++|++|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++.  |+
T Consensus       572 L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~  647 (876)
T 4ecn_A          572 MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG  647 (876)
T ss_dssp             CTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEE
T ss_pred             CCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCC
Confidence            999999999999998 778 8999999999999999998 88888999999 999999999998 67877776654  99


Q ss_pred             eeeccCccccCCCCccC---C--CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccC--------
Q 043943          303 ILYLYSNQLSGSIPKEI---G--NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGN--------  369 (775)
Q Consensus       303 ~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------  369 (775)
                      .|++++|.+++.+|...   .  .+++|+.|++++|++....+..+..+++|+.|++++|.+. .+|..+..        
T Consensus       648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTT
T ss_pred             EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccc
Confidence            99999999988765422   2  3458999999999999544444458899999999999998 55544333        


Q ss_pred             CCCCcEEEeccceecccCCccCc--CCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCC
Q 043943          370 LVELVSLLLGFNYFRGPIPKNFK--NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG  447 (775)
Q Consensus       370 l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  447 (775)
                      +++|+.|++++|.++ .+|..+.  .+++|+.|++++|.+.+ +|..+ ..+++|+.|++++|+                
T Consensus       727 l~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l-~~L~~L~~L~Ls~N~----------------  787 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP-LNSSQLKAFGIRHQR----------------  787 (876)
T ss_dssp             GGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG-GGCTTCCEEECCCCB----------------
T ss_pred             cCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh-hcCCCCCEEECCCCC----------------
Confidence            338999999999998 6777776  78888888888888877 45554 577788888887654                


Q ss_pred             EEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCc
Q 043943          448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENR  527 (775)
Q Consensus       448 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~  527 (775)
                        ++++|.+.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..+.....+..+.|.+|.
T Consensus       788 --~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          788 --DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             --CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             --CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence              3344666666666666666677777776666 45555543  467777777776654444444333334444444444


Q ss_pred             c
Q 043943          528 L  528 (775)
Q Consensus       528 l  528 (775)
                      .
T Consensus       863 ~  863 (876)
T 4ecn_A          863 T  863 (876)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-50  Score=453.71  Aligned_cols=518  Identities=22%  Similarity=0.211  Sum_probs=394.5

Q ss_pred             CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943           85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN  164 (775)
Q Consensus        85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  164 (775)
                      .+.++.++..++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus         9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            355677766666 4555443  5788888888888877777888888888888888888877777788888888888888


Q ss_pred             CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccc-cCccCCCCCCCCEEEcccccccccC
Q 043943          165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSGAI  243 (775)
Q Consensus       165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~  243 (775)
                      |.+++..+..|..+++|++|++++|.+++..+..++++++|++|++++|.+++. +|..|.++++|++|++++|.+.+..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            888887778888888888888888887765555677888888888888887763 5777888888888888888877766


Q ss_pred             CccccCCCCC----cEEEcccccCCCCCCccccCCCCCCEEEcccCcccc-cCCccCCCCCCCCeeeccCccccCCCCcc
Q 043943          244 PSSIGNVRNL----RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG-VIPSSIGNSNNLSILYLYSNQLSGSIPKE  318 (775)
Q Consensus       244 ~~~l~~l~~L----~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  318 (775)
                      +..++.+++|    +.|++++|.+++..|..+..+ +|++|++++|.... ..+..+..+++++.+.+....+..     
T Consensus       166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~-----  239 (570)
T 2z63_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-----  239 (570)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-----
T ss_pred             HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC-----
Confidence            6667777776    777777777776666666544 67777777764321 223344455555554443322211     


Q ss_pred             CCCCCCCCeeeCcCCcCcCccCCcCCCCC--cCcEEEccCC-cCCCCchhhccCCCCCcEEEeccceecccCCccCcCCC
Q 043943          319 IGNLKCLFDLELSMNNLTGVIPSSIGNLR--NLRLLYLYRN-ELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT  395 (775)
Q Consensus       319 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  395 (775)
                         ...++.          .....+..++  .++.+++..+ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ 
T Consensus       240 ---~~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-  304 (570)
T 2z63_A          240 ---EGNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-  304 (570)
T ss_dssp             ---CSSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-
T ss_pred             ---chhhhh----------cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-
Confidence               011111          1111122222  3455666665 555666667777777777777777776 356666666 


Q ss_pred             cccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccC--CccccCCCCCcEE
Q 043943          396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSI--PPEIGNSSKLQVL  473 (775)
Q Consensus       396 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L  473 (775)
                      +|+.|++++|.+. .++.   ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++|
T Consensus       305 ~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  378 (570)
T 2z63_A          305 GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL  378 (570)
T ss_dssp             CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred             CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence            7888888877776 3332   3577888888888887766554  67889999999999888654  6778899999999


Q ss_pred             EccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCC-cCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcC
Q 043943          474 NLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLP-PEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF  552 (775)
Q Consensus       474 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  552 (775)
                      ++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       379 ~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  457 (570)
T 2z63_A          379 DLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  457 (570)
T ss_dssp             ECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred             ECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcC
Confidence            9999998865554 8889999999999999987665 5688899999999999999998899999999999999999999


Q ss_pred             c-cCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 043943          553 S-HKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF  631 (775)
Q Consensus       553 ~-~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~  631 (775)
                      + +.+|..+..++ +|+.|++++|++++..|..|..+++|++|++++|++++.+|..|..+++|+.|++++|++.|.+|.
T Consensus       458 ~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          458 QENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             GGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccccchhhhhccc-CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            7 57888888888 999999999999998899999999999999999999999999999999999999999999999997


Q ss_pred             CCc
Q 043943          632 SKA  634 (775)
Q Consensus       632 ~~~  634 (775)
                      .+.
T Consensus       537 ~~~  539 (570)
T 2z63_A          537 IDY  539 (570)
T ss_dssp             THH
T ss_pred             hHH
Confidence            543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-49  Score=447.75  Aligned_cols=489  Identities=23%  Similarity=0.220  Sum_probs=372.0

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            57999999999999888889999999999999999999888888999999999999999999888899999999999999


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCC----CEEEcccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL----SNLNMSMN  237 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n  237 (775)
                      ++|.+++..+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++|    +.|++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9999998877789999999999999999886 468899999999999999999998888889888888    89999999


Q ss_pred             cccccCCccccCCCCCcEEEcccccCCC-CCCccccCCCCCCEEEcccCccc------ccCCccCCCCCC--CCeeeccC
Q 043943          238 HLSGAIPSSIGNVRNLRSLFLYSNELSG-SIPKEIGNLRSLSNLDLSINRLN------GVIPSSIGNSNN--LSILYLYS  308 (775)
Q Consensus       238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~------~~~~~~l~~l~~--L~~L~l~~  308 (775)
                      .+.+..+..+..+ +|+.|++++|.... .++..+..+++++.+.+....+.      ......+..+.+  ++.+++.+
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            9998888877766 89999999985432 34556777888887776543322      111122222222  33444444


Q ss_pred             c-cccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccC
Q 043943          309 N-QLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI  387 (775)
Q Consensus       309 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  387 (775)
                      + .+.+..+..+..+++|++|++++|.+.+ +|..+..+ +|++|++++|.+. .+|.  ..+++|+.|+++        
T Consensus       267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~--------  333 (570)
T 2z63_A          267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFT--------  333 (570)
T ss_dssp             TTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEE--------
T ss_pred             chhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCc--------
Confidence            4 4455555555556666666666665553 44445555 5666666655554 2222  234444444444        


Q ss_pred             CccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeec--CcCcCCCCCCCEEEcccCcccccCCcccc
Q 043943          388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQI--SSDWGRFPQLGTLDFSVNNITGSIPPEIG  465 (775)
Q Consensus       388 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  465 (775)
                                      +|.+.+..+.   ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+. +.
T Consensus       334 ----------------~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~  393 (570)
T 2z63_A          334 ----------------SNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL  393 (570)
T ss_dssp             ----------------SCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE
T ss_pred             ----------------CCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc
Confidence                            4444433332   34566677777776665543  45566777777777777777754443 77


Q ss_pred             CCCCCcEEEccCCCccCcCC-hhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCccc-ccCCccccCcCCCC
Q 043943          466 NSSKLQVLNLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLS-NAIPGSLGNLLKVH  543 (775)
Q Consensus       466 ~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~L~  543 (775)
                      .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|+
T Consensus       394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence            78888888888887776655 45677888888888888888777777888888888888888886 46777888888888


Q ss_pred             EEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCC
Q 043943          544 YLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIP  606 (775)
Q Consensus       544 ~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p  606 (775)
                      +|+|++|++++..|..+..++ +|+.|++++|++++..|..|..+++|+.|++++|++++..|
T Consensus       474 ~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          474 FLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             EEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EEECCCCccccCChhhhhccc-CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            888888888887788888777 88888888888888888888899999999999999887765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.9e-48  Score=433.30  Aligned_cols=492  Identities=19%  Similarity=0.182  Sum_probs=366.6

Q ss_pred             CCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943          106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD  185 (775)
Q Consensus       106 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  185 (775)
                      |+...+.+.+++.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus         4 C~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            4 CDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             ECTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            445556788888888 5666553  7899999999999888888899999999999999999988888899999999999


Q ss_pred             ccCCcCcccCCcccCCCCCccEEEcccccCccc-cCccCCCCCCCCEEEcccccccccC-CccccCCCCCcEEEcccccC
Q 043943          186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSGAI-PSSIGNVRNLRSLFLYSNEL  263 (775)
Q Consensus       186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~  263 (775)
                      +++|.+.+..+..|+++++|++|++++|.+++. .+..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            999998877777788899999999999988763 4667888889999999888743344 45788888888888888888


Q ss_pred             CCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCC--C-ccCCCCCCCCeeeCcCCcCcCccC
Q 043943          264 SGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSI--P-KEIGNLKCLFDLELSMNNLTGVIP  340 (775)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~  340 (775)
                      ++..|..+..+++|++|+++.|.+.......+..+++|++|++++|.+++..  + .....+++|+.|++++|.+.+..+
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence            8778888888888888888888776433333345777888888888777531  1 112345566666666666554322


Q ss_pred             ----CcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceecccccccccc-----
Q 043943          341 ----SSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNI-----  411 (775)
Q Consensus       341 ----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----  411 (775)
                          ..+..+++|+.+++++|.+.+.....                  ......+..+++|+.+.+.++.+....     
T Consensus       241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l  302 (549)
T 2z81_A          241 NELLKLLRYILELSEVEFDDCTLNGLGDFN------------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDL  302 (549)
T ss_dssp             HHHHGGGGGCTTCCEEEEESCEEECCSCCC------------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred             HHHHHHhhhhcccccccccccccccccccc------------------ccchhhhhhhcccccccccccccchhhhcccc
Confidence                22344455566666655543321000                  000112334455555555555443211     


Q ss_pred             chhhhccCCCCcEEeCCCccceeecCcCc-CCCCCCCEEEcccCcccccCCc---cccCCCCCcEEEccCCCccCcCC--
Q 043943          412 SEAFVGTYPTLSFLDLSHNNFHGQISSDW-GRFPQLGTLDFSVNNITGSIPP---EIGNSSKLQVLNLSSNHIGGKIP--  485 (775)
Q Consensus       412 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~--  485 (775)
                      +. .....++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+|.   .+..+++|++|++++|++++..+  
T Consensus       303 ~~-~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  380 (549)
T 2z81_A          303 ST-VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG  380 (549)
T ss_dssp             CH-HHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred             hh-hhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch
Confidence            11 1234568888888888876 455544 5688899999999988876543   46788899999999999886543  


Q ss_pred             hhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhc
Q 043943          486 MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQL  565 (775)
Q Consensus       486 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  565 (775)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++.. |..+  .++|++|+|++|++++.+    ..++ 
T Consensus       381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~-  451 (549)
T 2z81_A          381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLP-  451 (549)
T ss_dssp             HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCT-
T ss_pred             hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCC-
Confidence            45788999999999999998 6788888899999999999998754 3333  368999999999998754    3455 


Q ss_pred             cccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 043943          566 QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF  631 (775)
Q Consensus       566 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~  631 (775)
                      +|++|++++|+++ .+|. ...+++|++|++++|++++.+|..+..+++|+.|++++|++.|.+|.
T Consensus       452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            8999999999998 6776 46799999999999999999999999999999999999999999884

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.9e-47  Score=429.50  Aligned_cols=498  Identities=20%  Similarity=0.209  Sum_probs=349.1

Q ss_pred             CCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCch
Q 043943           46 LCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPP  125 (775)
Q Consensus        46 ~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~  125 (775)
                      .|.|.|+ |+.         +++.+. .+| ..+  .++|++|++++|.+++..|..|.++++|++|++++|.+.+..|.
T Consensus         3 ~C~~~~~-c~~---------~~~~l~-~ip-~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-CDG---------RSRSFT-SIP-SGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-EEC---------TTSCCS-SCC-SCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-EEC---------CCCccc-ccc-ccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            4999998 753         223333 344 222  26899999999999888888889999999999999998887778


Q ss_pred             hccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCccc-CCcccCCCCCCCEEeccCCcCcccCC-cccCCCC
Q 043943          126 EIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGY-IPPVIGNLISLSTLDLSLNQLIGSVP-FFLGNLT  203 (775)
Q Consensus       126 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~  203 (775)
                      .|..+++|++|++++|.+++..|..|.++++|++|++++|.+++. .+..+.++++|++|++++|.+.+.+| ..+.+++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            888999999999999998877777788888888888888888763 45677888888888888887433443 5677778


Q ss_pred             CccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCC--C-ccccCCCCCCEE
Q 043943          204 NLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI--P-KEIGNLRSLSNL  280 (775)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~-~~l~~l~~L~~L  280 (775)
                      +|++|++++|.+++..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++..  | .....+++|+.|
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L  228 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL  228 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence            8888888888877777777777777777777777665322222345677777777777776531  1 112345666666


Q ss_pred             EcccCcccccCCc----cCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccC
Q 043943          281 DLSINRLNGVIPS----SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYR  356 (775)
Q Consensus       281 ~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  356 (775)
                      ++++|.+++..+.    .+..+++|+.+++++|.+.+...  +   +.             .....+..+++|+.|++.+
T Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~--~---~~-------------~~~~~~~~l~~L~~L~l~~  290 (549)
T 2z81_A          229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD--F---NP-------------SESDVVSELGKVETVTIRR  290 (549)
T ss_dssp             EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC--C---CC-------------CTTTCCCCCTTCCEEEEES
T ss_pred             eccccccchhHHHHHHHHhhhhcccccccccccccccccc--c---cc-------------cchhhhhhhcccccccccc
Confidence            6666665543222    22344555555555555443210  0   00             0012234556677777776


Q ss_pred             CcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeec
Q 043943          357 NELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQI  436 (775)
Q Consensus       357 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  436 (775)
                      +.+....  .+..                 ++..+...++|+.+++++|.+. .+|..++..+++|++|++++|++.+.+
T Consensus       291 ~~i~~~~--~~~~-----------------l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~  350 (549)
T 2z81_A          291 LHIPQFY--LFYD-----------------LSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEY  350 (549)
T ss_dssp             CBCSCGG--GSCC-----------------CCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred             cccchhh--hccc-----------------chhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccc
Confidence            6544211  0000                 1111222345566666666554 344444456777888888888777655


Q ss_pred             C---cCcCCCCCCCEEEcccCcccccCC--ccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcC
Q 043943          437 S---SDWGRFPQLGTLDFSVNNITGSIP--PEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPE  511 (775)
Q Consensus       437 ~---~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~  511 (775)
                      +   ..+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..
T Consensus       351 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~  428 (549)
T 2z81_A          351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC  428 (549)
T ss_dssp             HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT
T ss_pred             ccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch
Confidence            3   346778888888888888875432  45788899999999999888 567778888999999999998873 4433


Q ss_pred             ccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCC
Q 043943          512 IGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESL  591 (775)
Q Consensus       512 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  591 (775)
                      +  .++|++|++++|++++.+    ..+++|++|+|++|+++ .+|. ...++ +|+.|++++|++++.+|..|..+++|
T Consensus       429 ~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L  499 (549)
T 2z81_A          429 I--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFP-VLLVMKISRNQLKSVPDGIFDRLTSL  499 (549)
T ss_dssp             S--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCT-TCCEEECCSSCCCCCCTTGGGGCTTC
T ss_pred             h--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCc-cCCEEecCCCccCCcCHHHHhcCccc
Confidence            3  368999999999998653    57889999999999998 5665 45566 99999999999999889899999999


Q ss_pred             cEEeCCCCcCcccCC
Q 043943          592 VKLNLSYNQLSGFIP  606 (775)
Q Consensus       592 ~~L~ls~n~l~~~~p  606 (775)
                      +.|++++|++.+..|
T Consensus       500 ~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          500 QKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CEEECCSSCBCCCHH
T ss_pred             CEEEecCCCccCCCc
Confidence            999999999988766

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.8e-48  Score=440.83  Aligned_cols=513  Identities=18%  Similarity=0.217  Sum_probs=410.3

Q ss_pred             CcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCccc-ceeeCCC---CCEEEEEcCCCCCccccCccccCCCC
Q 043943            8 DSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWS-GIYCNHD---ERVVGINLTTTSLNGTLDEFSFSSFP   83 (775)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~w~-gv~c~~~---~~v~~l~l~~~~~~~~~~~~~~~~l~   83 (775)
                      .++++...-.++++-... -.+  ..|...+  ......|.|. +..|+.+   ..|+.-             .    -.
T Consensus        24 ~~~~~~~d~~aL~~~~~~-~~~--~~w~~~~--~~~~~~~~W~~~~~~c~w~~~~GV~C~-------------~----~~   81 (636)
T 4eco_A           24 RTAEYIKDYLALKEIWDA-LNG--KNWSQQG--FGTQPGANWNFNKELDMWGAQPGVSLN-------------S----NG   81 (636)
T ss_dssp             CCCHHHHHHHHHHHHHHH-TTG--GGCCCCC--------CCCCCSSCGGGTTCCTTEEEC-------------T----TC
T ss_pred             hhhhHHHHHHHHHHHHHH-cCC--CCcccCC--cCCccCCCCCCCCCcccccCCCCeEEc-------------C----CC
Confidence            334555666666655554 222  3687321  0111235796 4555566   555530             0    04


Q ss_pred             CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCC------CC------CCchhccCCCCCCEEECCCccccccCcccc
Q 043943           84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL------SG------KIPPEIGQLSFLSELSLYSNCLNGSIPQSL  151 (775)
Q Consensus        84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~------~~------~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~  151 (775)
                      +++.|+|+++.+.|.+|.+++++++|++|+|++|.+      .+      .+|...  +..|+ ++++.+.+.+..|..+
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~  158 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDF  158 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGS
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhH
Confidence            788999999999999999999999999999999976      22      233333  45666 7777777777666655


Q ss_pred             cC-CCCCCEEEcccCcCcccCCcccCCCCCCCEEecc--CCcCcccCCcccCCCCCccEEEcccccCccc----------
Q 043943          152 GN-LSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLS--LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF----------  218 (775)
Q Consensus       152 ~~-l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------  218 (775)
                      .. +..+..+++....+..      .....++.+.+.  .|.+++ +|..++++++|++|++++|.+++.          
T Consensus       159 ~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  231 (636)
T 4eco_A          159 SDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN  231 (636)
T ss_dssp             CHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred             HHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccc
Confidence            42 1222222222222111      112233333333  577887 899999999999999999999985          


Q ss_pred             -------cCccCC--CCCCCCEEEcccccccccCCccccCCCCCcEEEccccc-CCC-CCCccccCC------CCCCEEE
Q 043943          219 -------IPSTLG--KLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNE-LSG-SIPKEIGNL------RSLSNLD  281 (775)
Q Consensus       219 -------~~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~  281 (775)
                             +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..+..+      ++|++|+
T Consensus       232 ~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~  311 (636)
T 4eco_A          232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY  311 (636)
T ss_dssp             SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred             cchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence                   899999  99999999999999999999999999999999999998 988 789888776      9999999


Q ss_pred             cccCcccccCCc--cCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCc-CcEEEccCCc
Q 043943          282 LSINRLNGVIPS--SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRN-LRLLYLYRNE  358 (775)
Q Consensus       282 l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~  358 (775)
                      +++|.++ .+|.  .+..+++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.
T Consensus       312 L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          312 IGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             CCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred             CCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence            9999999 7787  89999999999999999998888 8999999999999999999 77888999999 9999999999


Q ss_pred             CCCCchhhccCCC--CCcEEEeccceecccCCccCc-------CCCcccceeccccccccccchhhhccCCCCcEEeCCC
Q 043943          359 LSGSIPQAIGNLV--ELVSLLLGFNYFRGPIPKNFK-------NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSH  429 (775)
Q Consensus       359 l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  429 (775)
                      ++ .+|..+..+.  +|+.|++++|.+.+..|..+.       .+++|+.|++++|.+. .++...+..+++|++|++++
T Consensus       389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCS
T ss_pred             Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCC
Confidence            98 7788777655  899999999999999998888       8889999999999999 45555557899999999999


Q ss_pred             ccceeecCcCcCCC-------CCCCEEEcccCcccccCCcccc--CCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcC
Q 043943          430 NNFHGQISSDWGRF-------PQLGTLDFSVNNITGSIPPEIG--NSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILN  500 (775)
Q Consensus       430 n~l~~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  500 (775)
                      |+++...+..+...       ++|++|++++|.++ .+|..+.  .+++|++|+|++|++++ +|..+..+++|++|+|+
T Consensus       467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             CCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence            99994333334333       39999999999999 6788776  99999999999999997 88889999999999999


Q ss_pred             CCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCccc
Q 043943          501 KNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGE  580 (775)
Q Consensus       501 ~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~  580 (775)
                      +|+                  ++++|++.+.+|..+..+++|++|+|++|++ +.+|..+.  + +|+.|++++|.+...
T Consensus       545 ~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~-~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          545 NQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P-NISVLDIKDNPNISI  602 (636)
T ss_dssp             SCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T-TCCEEECCSCTTCEE
T ss_pred             CCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C-cCCEEECcCCCCccc
Confidence            987                  6788999999999999999999999999999 67887755  3 999999999988643


Q ss_pred             C
Q 043943          581 I  581 (775)
Q Consensus       581 ~  581 (775)
                      .
T Consensus       603 ~  603 (636)
T 4eco_A          603 D  603 (636)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.6e-45  Score=420.81  Aligned_cols=518  Identities=22%  Similarity=0.204  Sum_probs=369.2

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      +++++|+|++|.|++..+.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47999999999999888889999999999999999999877888999999999999999999777778999999999999


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCC----CEEEcccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL----SNLNMSMN  237 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n  237 (775)
                      ++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|.+++..+..|..+.++    ..++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            9999998888889999999999999998875 356778889999999999999998888877665544    46788888


Q ss_pred             cccccCCccccCCCCCcEEEcccccCCC-CCCccccCCCCCCEEEcccCccc------ccCCccCCCCCCCCeeeccCcc
Q 043943          238 HLSGAIPSSIGNVRNLRSLFLYSNELSG-SIPKEIGNLRSLSNLDLSINRLN------GVIPSSIGNSNNLSILYLYSNQ  310 (775)
Q Consensus       238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~------~~~~~~l~~l~~L~~L~l~~n~  310 (775)
                      .+....+.. .....++.+++.+|.... ..+..+..+..++...+..+...      ......+..+..+....+..+.
T Consensus       212 ~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            887554443 344567778887775442 22334556677766665433221      1122223333333333333222


Q ss_pred             ccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCcc
Q 043943          311 LSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKN  390 (775)
Q Consensus       311 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  390 (775)
                      .....                     ......+..+.+++.+.+..+.+....  .+.....++.|++.+|.+.+..+. 
T Consensus       291 ~~~~~---------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~-  346 (635)
T 4g8a_A          291 LDYYL---------------------DGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL-  346 (635)
T ss_dssp             CCSCE---------------------EECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC-
T ss_pred             hcccc---------------------cchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc-
Confidence            11100                     011122333344444444444433221  123334455555555544433222 


Q ss_pred             CcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccce--eecCcCcCCCCCCCEEEcccCcccccCCccccCCC
Q 043943          391 FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFH--GQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSS  468 (775)
Q Consensus       391 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  468 (775)
                        .+..|+.+.+..|........   ..+++|+.+++++|.+.  +..+..+..+.+|+.+++..+.+.. .+..+..++
T Consensus       347 --~l~~L~~l~l~~n~~~~~~~~---~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~  420 (635)
T 4g8a_A          347 --KLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLE  420 (635)
T ss_dssp             --BCTTCCEEEEESCCSCCBCCC---CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCT
T ss_pred             --cchhhhhcccccccCCCCccc---ccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccc
Confidence              233445555555544332221   34567777777777654  2344455566777777777776653 344567778


Q ss_pred             CCcEEEccCCCccCcCC-hhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcc-cccCCccccCcCCCCEEE
Q 043943          469 KLQVLNLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRL-SNAIPGSLGNLLKVHYLN  546 (775)
Q Consensus       469 ~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l-~~~~~~~~~~l~~L~~L~  546 (775)
                      +|+.++++.+......+ ..+..+++++.+++++|.+.+..+..+..+++|+.|++++|.+ .+..|..|..+++|++|+
T Consensus       421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~  500 (635)
T 4g8a_A          421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  500 (635)
T ss_dssp             TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence            88888887776654443 4567788888888888888877777888888888888888874 445677888888899999


Q ss_pred             ccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCC-CCCCEEeCCCCcc
Q 043943          547 LSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDM-HGLSSIDISYNRL  625 (775)
Q Consensus       547 Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~l~ls~n~l  625 (775)
                      |++|++++..|..|..++ +|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+ ++|+.|++++|++
T Consensus       501 Ls~N~L~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          501 LSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             CTTSCCCEECTTTTTTCT-TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             CCCCccCCcChHHHcCCC-CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            999988888888888888 89999999999998888899999999999999999999999999888 6899999999999


Q ss_pred             cccCCCC
Q 043943          626 QGPVPFS  632 (775)
Q Consensus       626 ~~~~p~~  632 (775)
                      .|.|...
T Consensus       580 ~C~C~~~  586 (635)
T 4g8a_A          580 ACTCEHQ  586 (635)
T ss_dssp             CCSGGGH
T ss_pred             cccCCcH
Confidence            9988743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-45  Score=411.86  Aligned_cols=465  Identities=20%  Similarity=0.227  Sum_probs=288.9

Q ss_pred             CEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCC
Q 043943          110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLN  189 (775)
Q Consensus       110 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  189 (775)
                      ++|++++|.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            57888998888 5676665  78899999999888777778888888888888888888887888888888888888888


Q ss_pred             cCcccCCcccCCCCCccEEEcccccCccc-cCccCCCCCCCCEEEcccccccccCCccccCCCCC--cEEEcccccC--C
Q 043943          190 QLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL--RSLFLYSNEL--S  264 (775)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~--~  264 (775)
                      .++ .+|..  .+++|++|++++|.+++. .|..|+++++|++|++++|.+.+   ..+..+++|  +.|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            877 45544  677888888888887763 56777777788888877777764   245555666  7777777776  5


Q ss_pred             CCCCccccCCC-CCCEEEcccCcccccCC-ccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCc
Q 043943          265 GSIPKEIGNLR-SLSNLDLSINRLNGVIP-SSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSS  342 (775)
Q Consensus       265 ~~~~~~l~~l~-~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  342 (775)
                      +..|..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|......                 ..+.+.++ .
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----------------~~~~~~~~-~  215 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC-----------------SYFLSILA-K  215 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT-----------------HHHHHHHH-G
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc-----------------ceeecchh-h
Confidence            55555555443 12234445555443322 23344444444444444300000                 00333333 4


Q ss_pred             CCCCCcCcEEEccCCcCCCCchhhc---cCCCCCcEEEeccceecccCCccC-----cCCCcccceeccccccccccchh
Q 043943          343 IGNLRNLRLLYLYRNELSGSIPQAI---GNLVELVSLLLGFNYFRGPIPKNF-----KNLTNLVRVRMNQNNLSGNISEA  414 (775)
Q Consensus       343 ~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~  414 (775)
                      +..+++|+.|++++|.+.+..+..+   ...++|+.|++++|.+.+.+|..+     ..+++|+.+++++|.+  .+|..
T Consensus       216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~  293 (520)
T 2z7x_B          216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS  293 (520)
T ss_dssp             GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTH
T ss_pred             hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchh
Confidence            5556666666666665543222111   113577788888888777777776     6677777777777766  33321


Q ss_pred             hhccC---CCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcC
Q 043943          415 FVGTY---PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRL  491 (775)
Q Consensus       415 ~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l  491 (775)
                      ....+   .+|+.|++++|.+....  .+..+++|++|++++|.+++.+|..+..+++|++|++++|++.+..       
T Consensus       294 ~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-------  364 (520)
T 2z7x_B          294 YIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS-------  364 (520)
T ss_dssp             HHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH-------
T ss_pred             hhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc-------
Confidence            11221   45666666666544221  0134445555555555554444444444444444444444444310       


Q ss_pred             CCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCC-ccccCcCCCCEEEccCCcCccCCchhHHhhhccccEE
Q 043943          492 SSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIP-GSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSEL  570 (775)
Q Consensus       492 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L  570 (775)
                                     .+|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++.+|..+.   ++|+.|
T Consensus       365 ---------------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~L~~L  426 (520)
T 2z7x_B          365 ---------------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVL  426 (520)
T ss_dssp             ---------------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---TTCCEE
T ss_pred             ---------------cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc---ccCCEE
Confidence                           233344555555555555555554222 2355556666666666666555554432   277788


Q ss_pred             ECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 043943          571 DLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF  631 (775)
Q Consensus       571 ~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~  631 (775)
                      ++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++|.++.
T Consensus       427 ~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            88888877 7777777888888888888888854444588888999999999999888774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-45  Score=411.40  Aligned_cols=449  Identities=19%  Similarity=0.224  Sum_probs=223.5

Q ss_pred             EEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCc
Q 043943           87 FLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNS  166 (775)
Q Consensus        87 ~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~  166 (775)
                      +|++++|.++ .+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|++++..|..|.++++|++|++++|.
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            4555555554 2343333  455555555555554444555555555555555555554445555555555555555555


Q ss_pred             CcccCCcccCCCCCCCEEeccCCcCcc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCC--CEEEcccccc--cc
Q 043943          167 LSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL--SNLNMSMNHL--SG  241 (775)
Q Consensus       167 ~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~  241 (775)
                      ++.. |..  .+++|++|++++|.+++ ..|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+
T Consensus        81 l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           81 LVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             CCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred             eeec-Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence            5532 222  45555555555555554 244555555555666655555543   234444444  6666666655  44


Q ss_pred             cCCccccCCC-CCcEEEcccccCCCCCCc-cccCCCCCCEEEcccCc-------ccccCCccCCCCCCCCeeeccCcccc
Q 043943          242 AIPSSIGNVR-NLRSLFLYSNELSGSIPK-EIGNLRSLSNLDLSINR-------LNGVIPSSIGNSNNLSILYLYSNQLS  312 (775)
Q Consensus       242 ~~~~~l~~l~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~~L~~L~l~~n~l~  312 (775)
                      ..|..+..+. ....+++++|.+.+.++. .+..+++|+.|++++|.       +.+.++ .+..+++|+.|++++|.++
T Consensus       155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~  233 (520)
T 2z7x_B          155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT  233 (520)
T ss_dssp             CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred             cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence            5555554443 223445555555443332 34556666666666665       444433 4556666666666666555


Q ss_pred             CCCCccC---CCCCCCCeeeCcCCcCcCccCCcC-----CCCCcCcEEEccCCcCCCCch-hhccCC---CCCcEEEecc
Q 043943          313 GSIPKEI---GNLKCLFDLELSMNNLTGVIPSSI-----GNLRNLRLLYLYRNELSGSIP-QAIGNL---VELVSLLLGF  380 (775)
Q Consensus       313 ~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~l~~  380 (775)
                      +..+..+   ...++|++|++++|++.+.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~  311 (520)
T 2z7x_B          234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG  311 (520)
T ss_dssp             HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred             HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence            3221111   113466777777777666666665     6667777777777766  333 333332   4566666666


Q ss_pred             ceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccc--
Q 043943          381 NYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITG--  458 (775)
Q Consensus       381 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--  458 (775)
                      |.+....  .+..++                         +|++|++++|++.+..|..+..+++|++|++++|++++  
T Consensus       312 n~l~~~~--~~~~l~-------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  364 (520)
T 2z7x_B          312 TRMVHML--CPSKIS-------------------------PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS  364 (520)
T ss_dssp             SCCCCCC--CCSSCC-------------------------CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred             Ccccccc--chhhCC-------------------------cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence            6554221  012334                         44444444444444444444444444444444444443  


Q ss_pred             cCCccccCCCCCcEEEccCCCccCcCCh-hhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCcccc
Q 043943          459 SIPPEIGNSSKLQVLNLSSNHIGGKIPM-ELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLG  537 (775)
Q Consensus       459 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~  537 (775)
                      .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..|..+.  ++|+.|++++|+++ .+|..+.
T Consensus       365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~  441 (520)
T 2z7x_B          365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV  441 (520)
T ss_dssp             HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred             cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence            2333444444444444444444442332 234444445555555444444333332  34455555555444 3333333


Q ss_pred             CcCCCCEEEccCCcCccCCchh-HHhhhccccEEECcCCcCcc
Q 043943          538 NLLKVHYLNLSNNEFSHKIPTQ-FEKLQLQLSELDLSQNFLEG  579 (775)
Q Consensus       538 ~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~~L~~L~Ls~n~l~~  579 (775)
                      .+++|++|+|++|+++. +|.. +..++ +|+.|++++|.+++
T Consensus       442 ~l~~L~~L~L~~N~l~~-l~~~~~~~l~-~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          442 KLEALQELNVASNQLKS-VPDGIFDRLT-SLQKIWLHTNPWDC  482 (520)
T ss_dssp             GCTTCCEEECCSSCCCC-CCTTTTTTCT-TCCEEECCSSCBCC
T ss_pred             cCCCCCEEECCCCcCCc-cCHHHhccCC-cccEEECcCCCCcc
Confidence            44555555555555442 3322 33443 45555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-44  Score=417.58  Aligned_cols=464  Identities=19%  Similarity=0.226  Sum_probs=222.3

Q ss_pred             CCCCEEeCcCCCCCCCCchhccCCCCCCEEEC-CCccccccCcccccCC-CCCCEEE-----c----------ccCcCcc
Q 043943          107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSL-YSNCLNGSIPQSLGNL-SKQSLLS-----L----------YNNSLSG  169 (775)
Q Consensus       107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L-~~n~~~~~~~~~~~~l-~~L~~L~-----l----------~~n~~~~  169 (775)
                      .+++.|+|+++.+.|.+|..|+++++|++|+| ++|.+.|..|...... ..+....     .          ....+..
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            45777777777777777777777788888888 7776665533211100 0000000     0          0000000


Q ss_pred             cC-----------CcccCCCCCCCEEeccC--CcCcccCCcccCCCCCccEEEcccccCcc-----------------cc
Q 043943          170 YI-----------PPVIGNLISLSTLDLSL--NQLIGSVPFFLGNLTNLVTLHLFNNSLSG-----------------FI  219 (775)
Q Consensus       170 ~~-----------~~~l~~l~~L~~L~l~~--n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~  219 (775)
                      ..           +........++.+.+..  |.+++ +|..++++++|++|+|++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence            00           00001111222222222  44444 45555555555555555555555                 24


Q ss_pred             CccCC--CCCCCCEEEcccccccccCCccccCCCCCcEEEccccc-CCC-CCCccccCC-------CCCCEEEcccCccc
Q 043943          220 PSTLG--KLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNE-LSG-SIPKEIGNL-------RSLSNLDLSINRLN  288 (775)
Q Consensus       220 ~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l-------~~L~~L~l~~n~~~  288 (775)
                      |..++  ++++|++|++++|.+.+.+|..+.++++|+.|++++|. +++ .+|..+..+       ++|++|++++|.++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            44444  55555555555555555555555555555555555554 444 344433322       25555555555555


Q ss_pred             ccCCc--cCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCc-CcEEEccCCcCCCCchh
Q 043943          289 GVIPS--SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRN-LRLLYLYRNELSGSIPQ  365 (775)
Q Consensus       289 ~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~  365 (775)
                       .+|.  .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|++. .+|..+..+++ |+.|++++|.+. .+|.
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence             4444  4555555555555555554 444 4555555555555555555 44444555554 555555555554 3444


Q ss_pred             hccCCCC--CcEEEeccceecccCCccC---c--CCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCc
Q 043943          366 AIGNLVE--LVSLLLGFNYFRGPIPKNF---K--NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS  438 (775)
Q Consensus       366 ~~~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  438 (775)
                      .+..++.  |+.|++++|.+.+.+|...   .  .+++|+.|++++|.+. .+|..++..+++|+.|++++|++. .+|.
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~  714 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE  714 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence            4433322  5555555555544333211   1  2234555555555544 233333344455555555555544 2222


Q ss_pred             Cc-CCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhh--cCCCCCEEEcCCCcCcccCCcCccCC
Q 043943          439 DW-GRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELG--RLSSLNKLILNKNQLFGSLPPEIGTL  515 (775)
Q Consensus       439 ~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~l  515 (775)
                      .+ ....                 ..+.++++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+
T Consensus       715 ~~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L  775 (876)
T 4ecn_A          715 NSLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS  775 (876)
T ss_dssp             TSSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred             HHhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence            21 1111                 00001124445555544444 3344443  44455555555555443 34444444


Q ss_pred             CCCCEEECCC------CcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCC
Q 043943          516 TELELLDLSE------NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNME  589 (775)
Q Consensus       516 ~~L~~L~ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~  589 (775)
                      ++|+.|+|++      |.+.+.+|..+..+++|+.|+|++|++ +.+|..+.   ++|+.|+|++|++....+..++...
T Consensus       776 ~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~  851 (876)
T 4ecn_A          776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNISIDVTSVCPYI  851 (876)
T ss_dssp             TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHH
T ss_pred             CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCccChHHccccc
Confidence            5555554433      556666666666666666666666666 45555533   2666666666666655555555444


Q ss_pred             CCcEEeCCCCcC
Q 043943          590 SLVKLNLSYNQL  601 (775)
Q Consensus       590 ~L~~L~ls~n~l  601 (775)
                      .+..+.+.+|..
T Consensus       852 ~~~~~~L~~n~~  863 (876)
T 4ecn_A          852 EAGMYVLLYDKT  863 (876)
T ss_dssp             HTTCCEEECCTT
T ss_pred             cchheeecCCCc
Confidence            444555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.8e-42  Score=394.04  Aligned_cols=533  Identities=22%  Similarity=0.206  Sum_probs=398.0

Q ss_pred             EEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCc
Q 043943           87 FLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNS  166 (775)
Q Consensus        87 ~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~  166 (775)
                      +.+-++..++ .+|..+.  +++++|||++|.+++..+.+|.++++|++|+|++|+++++.|.+|.++++|++|+|++|+
T Consensus        35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            3455555565 4565443  478999999999987777789999999999999999987777788999999999999998


Q ss_pred             CcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccc-cCccCCCCCCCCEEEcccccccccCCc
Q 043943          167 LSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSGAIPS  245 (775)
Q Consensus       167 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~  245 (775)
                      +++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|.+++..+.
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            8888778888888888888888888876666788888888888888887653 466777788888888888888777666


Q ss_pred             cccCCCCC----cEEEcccccCCCCCCccccCCCCCCEEEcccCcccc-cCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943          246 SIGNVRNL----RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG-VIPSSIGNSNNLSILYLYSNQLSGSIPKEIG  320 (775)
Q Consensus       246 ~l~~l~~L----~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  320 (775)
                      .+..+.++    ..++++.|.++...+..+ ....++.+++.+|.... ..+..+..+..++...+..+.....      
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~------  264 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE------  264 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS------
T ss_pred             cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccc------
Confidence            66554433    356666666654333322 33345556665554332 1122233444444333322211100      


Q ss_pred             CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCC---CchhhccCCCCCcEEEeccceecccCCccCcCCCcc
Q 043943          321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG---SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL  397 (775)
Q Consensus       321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  397 (775)
                                  ..+.......+..+..+....+..+....   .....+..+..++.+.+..+.+....  .+....+|
T Consensus       265 ------------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L  330 (635)
T 4g8a_A          265 ------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGW  330 (635)
T ss_dssp             ------------CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCC
T ss_pred             ------------cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhh
Confidence                        11111222334445556665555443322   22344566778899999988877543  35667789


Q ss_pred             cceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccc--cCCccccCCCCCcEEEc
Q 043943          398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITG--SIPPEIGNSSKLQVLNL  475 (775)
Q Consensus       398 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L  475 (775)
                      +.|++.+|.+.+...    ..++.|+.+++..|.....  .....+++|+.+++++|.+..  ..+..+..+.+|+++++
T Consensus       331 ~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~  404 (635)
T 4g8a_A          331 QHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL  404 (635)
T ss_dssp             SEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred             hhhhcccccccCcCc----ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence            999999998875544    3467899999998877643  344578999999999998864  35667788999999999


Q ss_pred             cCCCccCcCChhhhcCCCCCEEEcCCCcCcccCC-cCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCc-
Q 043943          476 SSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLP-PEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFS-  553 (775)
Q Consensus       476 s~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-  553 (775)
                      +.|.... .+..+..+++|+.+++.+|......+ ..+..+++++.++++.|.+.+..+..+..++.|+.|+|++|.+. 
T Consensus       405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~  483 (635)
T 4g8a_A          405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  483 (635)
T ss_dssp             CSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             ccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence            9998874 45567889999999999998876544 45788999999999999999999999999999999999999754 


Q ss_pred             cCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCC
Q 043943          554 HKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK  633 (775)
Q Consensus       554 ~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~  633 (775)
                      +..|..+..++ +|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|..-
T Consensus       484 ~~~~~~~~~l~-~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          484 NFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             GEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             ccCchhhhhcc-ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence            45677788888 99999999999999999999999999999999999999999999999999999999999999887532


Q ss_pred             -cC-CCCCccccCCCcCCCC
Q 043943          634 -AF-RDAPAEALQGNRGLCG  651 (775)
Q Consensus       634 -~~-~~~~~~~~~gn~~lc~  651 (775)
                       .+ ..+....+.+||..|.
T Consensus       563 ~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          563 QHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             TCCCTTCCEEECTTCCBCCS
T ss_pred             HhhhCcCCEEEeeCCCCccc
Confidence             12 3456667899999886

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-42  Score=388.31  Aligned_cols=465  Identities=20%  Similarity=0.186  Sum_probs=294.3

Q ss_pred             CCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943          106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD  185 (775)
Q Consensus       106 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  185 (775)
                      +...+++++++|.+++ +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            4455889999998884 666553  7889999999988877778888888888888888888888888888888888888


Q ss_pred             ccCCcCcccCCcccCCCCCccEEEcccccCccc-cCccCCCCCCCCEEEcccccccccCCccccCCCCC--cEEEccccc
Q 043943          186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL--RSLFLYSNE  262 (775)
Q Consensus       186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~  262 (775)
                      +++|.++ .+|..  .+++|++|++++|.+++. .|..|.++++|++|++++|.+.+.   .+..+++|  +.|++++|.
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            8888877 45544  678888888888887764 356777788888888888777643   34444444  777777777


Q ss_pred             C--CCCCCccccCCC--CCCEEEcccCcccccCCc-cCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcC
Q 043943          263 L--SGSIPKEIGNLR--SLSNLDLSINRLNGVIPS-SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG  337 (775)
Q Consensus       263 ~--~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  337 (775)
                      +  ++..|..+..+.  .+ .+++++|.+.+..+. .+..+++|+.+++++|.....                   .+.+
T Consensus       181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l~~  240 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RLMT  240 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HHHH
T ss_pred             ccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hHHH
Confidence            7  666666555443  22 345555555443322 233444555555554421000                   0111


Q ss_pred             ccCCcCCCCCcCcEEEccCCcCCCC----chhhccCCCCCcEEEeccceecccCCccC-----cCCCcccceeccccccc
Q 043943          338 VIPSSIGNLRNLRLLYLYRNELSGS----IPQAIGNLVELVSLLLGFNYFRGPIPKNF-----KNLTNLVRVRMNQNNLS  408 (775)
Q Consensus       338 ~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~  408 (775)
                      . ...+..++.|+.+++.++.+.+.    ++..+ ..++|+.|++++|.+.+.+|..+     ..++.|+.+++..+.+ 
T Consensus       241 ~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-  317 (562)
T 3a79_B          241 F-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-  317 (562)
T ss_dssp             H-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-
T ss_pred             H-HHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-
Confidence            1 11234445555555555544321    11111 23367777777777776666655     4445555555544444 


Q ss_pred             cccchhhhc---cCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCC
Q 043943          409 GNISEAFVG---TYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP  485 (775)
Q Consensus       409 ~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  485 (775)
                       .+|.....   ...+|+.|++++|                        .+....  ....+++|++|++++|++++..|
T Consensus       318 -~~p~~~~~~~~~~~~L~~L~l~~n------------------------~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~  370 (562)
T 3a79_B          318 -LFSKEALYSVFAEMNIKMLSISDT------------------------PFIHMV--CPPSPSSFTFLNFTQNVFTDSVF  370 (562)
T ss_dssp             -SSCHHHHHHHHHTCCCSEEEEESS------------------------CCCCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred             -ecChhhhhhhhccCcceEEEccCC------------------------Cccccc--CccCCCCceEEECCCCccccchh
Confidence             22211111   1133444444444                        443211  11455566666666666665556


Q ss_pred             hhhhcCCCCCEEEcCCCcCccc--CCcCccCCCCCCEEECCCCcccc-cCCccccCcCCCCEEEccCCcCccCCchhHHh
Q 043943          486 MELGRLSSLNKLILNKNQLFGS--LPPEIGTLTELELLDLSENRLSN-AIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK  562 (775)
Q Consensus       486 ~~l~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  562 (775)
                      ..+..+++|++|++++|++++.  +|..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++++.+|..+. 
T Consensus       371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-  449 (562)
T 3a79_B          371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-  449 (562)
T ss_dssp             TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-
T ss_pred             hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-
Confidence            6666666666666666666542  23456666777777777777766 3333466777777777777777765555433 


Q ss_pred             hhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCC
Q 043943          563 LQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK  633 (775)
Q Consensus       563 l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~  633 (775)
                        ++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.+++++|++.|.||..+
T Consensus       450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  517 (562)
T 3a79_B          450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR  517 (562)
T ss_dssp             --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred             --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence              37888888888888 677777789999999999999996544458899999999999999999887543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.3e-41  Score=383.43  Aligned_cols=454  Identities=20%  Similarity=0.178  Sum_probs=224.5

Q ss_pred             EEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCC
Q 043943           61 VGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYS  140 (775)
Q Consensus        61 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~  140 (775)
                      +.++++++++.+ +| ..+  .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus        34 ~~l~ls~~~L~~-ip-~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLTH-VP-KDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCCS-CC-TTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCcc-CC-CCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            566777776664 44 222  26677777777777766666677777777777777777766666677777777777777


Q ss_pred             ccccccCcccccCCCCCCEEEcccCcCccc-CCcccCCCCCCCEEeccCCcCcccCCcccCCCCCc--cEEEcccccC--
Q 043943          141 NCLNGSIPQSLGNLSKQSLLSLYNNSLSGY-IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNL--VTLHLFNNSL--  215 (775)
Q Consensus       141 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~l--  215 (775)
                      |.++ .+|..  .+++|++|++++|.+.+. .|..|.++++|++|++++|.+.+.   .+..+++|  ++|++++|.+  
T Consensus       110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred             CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence            7766 44444  666667777766666653 345666666666666666665532   23333333  6666666665  


Q ss_pred             ccccCccCCCCC--CCCEEEcccccccccCCc-cccCCCCCcEEEccccc-----CCCCCCccccCCCCCCEEEcccCcc
Q 043943          216 SGFIPSTLGKLK--CLSNLNMSMNHLSGAIPS-SIGNVRNLRSLFLYSNE-----LSGSIPKEIGNLRSLSNLDLSINRL  287 (775)
Q Consensus       216 ~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~-----~~~~~~~~l~~l~~L~~L~l~~n~~  287 (775)
                      ++..|..+..+.  .+ .++++.|.+.+.++. .+..+++|+.+++++|.     +.+ ....+..+++|+.|+++++.+
T Consensus       184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l  261 (562)
T 3a79_B          184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIET  261 (562)
T ss_dssp             CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEE
T ss_pred             cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcC
Confidence            555555444433  11 334444444433222 23344455555555442     110 111233344444444444333


Q ss_pred             cccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcC-----CCCCcCcEEEccCCcCCCC
Q 043943          288 NGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSI-----GNLRNLRLLYLYRNELSGS  362 (775)
Q Consensus       288 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~  362 (775)
                      .+..                   +.+ ++.. ...++|++|++++|.+.+.+|..+     ..++.|+.+++..+.+  .
T Consensus       262 ~~~~-------------------~~~-~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~  318 (562)
T 3a79_B          262 TWKC-------------------SVK-LFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L  318 (562)
T ss_dssp             CHHH-------------------HHH-HHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred             cHHH-------------------HHH-HHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence            2210                   000 0011 112245555555555554444443     3444444444444444  2


Q ss_pred             ch-hhccC---CCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCcccee--ec
Q 043943          363 IP-QAIGN---LVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHG--QI  436 (775)
Q Consensus       363 ~~-~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~  436 (775)
                      +| ..+..   ..+|+.|++++|.+....  ....+++|+.|++++|.+.+..+..+ ..+++|++|++++|++++  .+
T Consensus       319 ~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~  395 (562)
T 3a79_B          319 FSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKV  395 (562)
T ss_dssp             SCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHH
T ss_pred             cChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccc
Confidence            22 11111   134555555555443211  01334444444444444444333332 344444444444444443  12


Q ss_pred             CcCcCCCCCCCEEEcccCcccccCCc-cccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCC
Q 043943          437 SSDWGRFPQLGTLDFSVNNITGSIPP-EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTL  515 (775)
Q Consensus       437 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l  515 (775)
                      |..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+
T Consensus       396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l  472 (562)
T 3a79_B          396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL  472 (562)
T ss_dssp             HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred             hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence            23344555555555555555542332 344555555555555555544443322  45555555555554 344444455


Q ss_pred             CCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccC
Q 043943          516 TELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHK  555 (775)
Q Consensus       516 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  555 (775)
                      ++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus       473 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            5555555555555533222355555555555555555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-40  Score=344.55  Aligned_cols=293  Identities=30%  Similarity=0.512  Sum_probs=225.7

Q ss_pred             CCCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCCCcc--ccCccc
Q 043943            6 SSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCA--WSGIYCNHD---ERVVGINLTTTSLNG--TLDEFS   78 (775)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~--w~gv~c~~~---~~v~~l~l~~~~~~~--~~~~~~   78 (775)
                      +.|.++|++||++||+++.+ |. .+.+|.      .+.+||.  |.||.|+..   ++|+.++++++.+.+  .++ ..
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~-~~-~l~~W~------~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~   71 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGN-PT-TLSSWL------PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SS   71 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTC-CG-GGTTCC------TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GG
T ss_pred             CCCCHHHHHHHHHHHHhcCC-cc-cccCCC------CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC-hh
Confidence            35899999999999999964 54 688997      3568998  999999854   789999999999988  777 67


Q ss_pred             cCCCCCCCEEECCC-CCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCC
Q 043943           79 FSSFPDLLFLNLFN-NELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ  157 (775)
Q Consensus        79 ~~~l~~L~~L~ls~-~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  157 (775)
                      +.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+.+.+|..|..+++|++|++++|.+++.+|..+.++++|
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence            88888888888885 88888888888888888888888888887888888888888888888888888888888888888


Q ss_pred             CEEEcccCcCcccCCcccCCCC-CCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccc
Q 043943          158 SLLSLYNNSLSGYIPPVIGNLI-SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM  236 (775)
Q Consensus       158 ~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  236 (775)
                      ++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..++ |++|++++|.+++..+..+..+++|++|++++
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence            8888888888877777777776 778888877777777777776665 77777777777776677777777777777777


Q ss_pred             ccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcc
Q 043943          237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQ  310 (775)
Q Consensus       237 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  310 (775)
                      |.+.+..|. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++.+|.
T Consensus       231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            776654444 556666666666666666666666666666666666666666655554 555666666666655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.2e-39  Score=354.78  Aligned_cols=382  Identities=23%  Similarity=0.220  Sum_probs=294.1

Q ss_pred             CEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccccc-CCccCCCCCCCCeeeccC
Q 043943          230 SNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV-IPSSIGNSNNLSILYLYS  308 (775)
Q Consensus       230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~  308 (775)
                      +.++.+++.++ .+|. +  .++|++|++++|.+++..|..|.++++|++|++++|.+.+. .+..|..+++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45667777666 4554 2  26788888888888877788888888888888888888644 356788888888888888


Q ss_pred             ccccCCCCccCCCCCCCCeeeCcCCcCcCccCC--cCCCCCcCcEEEccCCcCCCCchhh-ccCCCCCcEEEeccceecc
Q 043943          309 NQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPS--SIGNLRNLRLLYLYRNELSGSIPQA-IGNLVELVSLLLGFNYFRG  385 (775)
Q Consensus       309 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~  385 (775)
                      |.+++..|..+.++++|++|++++|++++..+.  .+..+++|++|++++|.+.+..|.. +.++++|+.|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            888877788888888888888888888874443  3778888888888888888776655 7788888888888888887


Q ss_pred             cCCccCcCC--CcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCcc
Q 043943          386 PIPKNFKNL--TNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE  463 (775)
Q Consensus       386 ~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  463 (775)
                      ..+..+..+  .+|+.+++++|.+.+..+..+..                 .....+..+++|++|++++|.+++..|..
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  231 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----------------EKCGNPFKNTSITTLDLSGNGFKESMAKR  231 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred             cChhhhhccccccccccccccCcccccchhhccc-----------------cccccccccceeeeEecCCCcccccchhh
Confidence            777666555  45666666666655433221100                 00011223455666666666555555444


Q ss_pred             ccC---CCCCcEEEccCCCccC----------cCChhhhc--CCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcc
Q 043943          464 IGN---SSKLQVLNLSSNHIGG----------KIPMELGR--LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRL  528 (775)
Q Consensus       464 ~~~---~~~L~~L~Ls~n~l~~----------~~~~~l~~--l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l  528 (775)
                      +..   .++|+.|++++|...+          ..+..+..  .++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  311 (455)
T 3v47_A          232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI  311 (455)
T ss_dssp             HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence            432   2566666666654332          22222322  37899999999999999999999999999999999999


Q ss_pred             cccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCcc
Q 043943          529 SNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNC  608 (775)
Q Consensus       529 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~  608 (775)
                      ++..|..|..+++|++|+|++|.+++..|..+..++ +|++|++++|++++..|..|..+++|++|++++|++++..+..
T Consensus       312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  390 (455)
T 3v47_A          312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI  390 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             cccChhHhcCcccCCEEECCCCccCCcChhHhcCcc-cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH
Confidence            999999999999999999999999988888998888 9999999999999999999999999999999999999988888


Q ss_pred             ccCCCCCCEEeCCCCcccccCCCCC
Q 043943          609 FEDMHGLSSIDISYNRLQGPVPFSK  633 (775)
Q Consensus       609 l~~l~~L~~l~ls~n~l~~~~p~~~  633 (775)
                      +..+++|+.|++++|+++|.+|...
T Consensus       391 ~~~l~~L~~L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          391 FDRLTSLQKIWLHTNPWDCSCPRID  415 (455)
T ss_dssp             TTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             hccCCcccEEEccCCCcccCCCcch
Confidence            9999999999999999999999543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.4e-39  Score=351.06  Aligned_cols=390  Identities=21%  Similarity=0.216  Sum_probs=260.2

Q ss_pred             CEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccC-CcccCCCCCccEEEccc
Q 043943          134 SELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSV-PFFLGNLTNLVTLHLFN  212 (775)
Q Consensus       134 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~  212 (775)
                      +.++.+++.++ .+|. +  .++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45677777666 4454 2  267788888888877777777777778888888777765433 45677777777777777


Q ss_pred             ccCccccCccCCCCCCCCEEEcccccccccCCcc--ccCCCCCcEEEcccccCCCCCCcc-ccCCCCCCEEEcccCcccc
Q 043943          213 NSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSS--IGNVRNLRSLFLYSNELSGSIPKE-IGNLRSLSNLDLSINRLNG  289 (775)
Q Consensus       213 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~  289 (775)
                      |.+++..|..|.++++|++|++++|.+.+..+..  +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            7777777777777777777777777776544333  666777777777777776665654 5667777777777777766


Q ss_pred             cCCccCCCC--CCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhc
Q 043943          290 VIPSSIGNS--NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAI  367 (775)
Q Consensus       290 ~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  367 (775)
                      ..+..+..+  .+|+.|++++|.+.+..+..+.                ......+..+++|++|++++|.+.+..|..+
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  232 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKRF  232 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred             cChhhhhccccccccccccccCcccccchhhcc----------------ccccccccccceeeeEecCCCcccccchhhh
Confidence            666555544  4556666666655543222111                0001112344566677777776666555544


Q ss_pred             cCC---CCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhh-ccCCCCcEEeCCCccceeecCcCcCCC
Q 043943          368 GNL---VELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFV-GTYPTLSFLDLSHNNFHGQISSDWGRF  443 (775)
Q Consensus       368 ~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~  443 (775)
                      ...   ++|+.+++++|...+.... ...++.+.             ...+. ...++|++|++++|.+.+..+..+..+
T Consensus       233 ~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  298 (455)
T 3v47_A          233 FDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPD-------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF  298 (455)
T ss_dssp             HHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCC-------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC
T ss_pred             hccccccceeeEeeccccccccccc-hhhhccCc-------------ccccccccccCceEEEecCccccccchhhcccC
Confidence            433   5666666666654432110 01111111             11110 124678888888888888778888888


Q ss_pred             CCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEC
Q 043943          444 PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDL  523 (775)
Q Consensus       444 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  523 (775)
                      ++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+..+++|++|+|++|++++..|..+..+++|++|++
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  378 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL  378 (455)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence            88888888888888777777888888888888888887777777778888888888888887777777778888888888


Q ss_pred             CCCcccccCCccccCcCCCCEEEccCCcCccCCc
Q 043943          524 SENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIP  557 (775)
Q Consensus       524 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  557 (775)
                      ++|++++..+..+..+++|++|+|++|++++..|
T Consensus       379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            8888877666667777778888888887777665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.8e-39  Score=351.32  Aligned_cols=424  Identities=25%  Similarity=0.276  Sum_probs=188.8

Q ss_pred             CCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEE
Q 043943           82 FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLS  161 (775)
Q Consensus        82 l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  161 (775)
                      .++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++|+++++..|..           .++++|+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence            34555555555555 45555555555555555555555555555555555444444333321           2345666


Q ss_pred             cccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc
Q 043943          162 LYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG  241 (775)
Q Consensus       162 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  241 (775)
                      +++|.+++.. ..   .++|++|++++|.+++ +|..   +++|++|++++|.+++. +..   .++|++|++++|.+++
T Consensus        78 l~~~~l~~lp-~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~  145 (454)
T 1jl5_A           78 LNNLGLSSLP-EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK  145 (454)
T ss_dssp             CTTSCCSCCC-SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS
T ss_pred             ecCCccccCC-CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC
Confidence            6666555421 11   2456666666666654 3432   25566666666665542 111   1456666666666653


Q ss_pred             cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943          242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN  321 (775)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  321 (775)
                       +| .++.+++|++|++++|.+++ +|..+   .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   
T Consensus       146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---  213 (454)
T 1jl5_A          146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---  213 (454)
T ss_dssp             -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred             -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence             44 35666666666666666553 33322   356666666666554 23 35555666666666665553 2221   


Q ss_pred             CCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCccccee
Q 043943          322 LKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVR  401 (775)
Q Consensus       322 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  401 (775)
                      .++|++|++++|.+. .+|. +..+++|++|++++|.+++ +|.   ..                        ++|+.|+
T Consensus       214 ~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~------------------------~~L~~L~  263 (454)
T 1jl5_A          214 PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LP------------------------PSLEALN  263 (454)
T ss_dssp             CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CC------------------------TTCCEEE
T ss_pred             cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cc------------------------cccCEEE
Confidence            135555555555555 2332 4555555555555555543 221   12                        3445555


Q ss_pred             ccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCcc
Q 043943          402 MNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG  481 (775)
Q Consensus       402 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~  481 (775)
                      +++|.+.+ ++.    ..++|++|++++|++++...    ..++|++|++++|.+++. +.   ..++|++|++++|++.
T Consensus       264 l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~  330 (454)
T 1jl5_A          264 VRDNYLTD-LPE----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLI  330 (454)
T ss_dssp             CCSSCCSC-CCC----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCS
T ss_pred             CCCCcccc-cCc----ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCccc
Confidence            55554443 111    12566667777666665211    125677777777776642 11   1247778888887777


Q ss_pred             CcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccc--cCCccccCcCCCCEEEccCCcCccCCchh
Q 043943          482 GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSN--AIPGSLGNLLKVHYLNLSNNEFSHKIPTQ  559 (775)
Q Consensus       482 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  559 (775)
                      + +|..   +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..        ++.|.+.+.+|..
T Consensus       331 ~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~  394 (454)
T 1jl5_A          331 E-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL  394 (454)
T ss_dssp             C-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------
T ss_pred             c-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc
Confidence            5 4433   477888888888777 4554   46778888888888876  45544432        2345666666653


Q ss_pred             HHhhhccccEEECcCCcCcc--cCCccccCCCCCcEEeCCCCcCcccCCcccc
Q 043943          560 FEKLQLQLSELDLSQNFLEG--EIPSQICNMESLVKLNLSYNQLSGFIPNCFE  610 (775)
Q Consensus       560 ~~~l~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~  610 (775)
                         .. +|+.|++++|.+++  .+|.      +++.|.+.+|.+.+.++.+..
T Consensus       395 ---~~-~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~  437 (454)
T 1jl5_A          395 ---PQ-NLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHE  437 (454)
T ss_dssp             -----------------------------------------------------
T ss_pred             ---cC-cCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHH
Confidence               23 78888888888886  5664      355667778877776655443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.4e-38  Score=341.21  Aligned_cols=412  Identities=23%  Similarity=0.256  Sum_probs=185.6

Q ss_pred             CCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCC-------------CEEeCcCCCCCCCCc
Q 043943           58 ERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKL-------------QYLDLSANKLSGKIP  124 (775)
Q Consensus        58 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L-------------~~L~ls~n~~~~~~p  124 (775)
                      .+++.++++++.+ |.+| ..++++++|++|++++|.+.+.+|..++++++|             ++|++++|.+++ +|
T Consensus        11 ~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred             ccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence            5788899999999 8998 789999999999999999999999999998876             666666666553 23


Q ss_pred             hhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCC
Q 043943          125 PEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTN  204 (775)
Q Consensus       125 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  204 (775)
                      .   -.++|++|++++|.+++ +|..   +++|++|++++|.+++... .   .++|++|++++|.+++ +| .++++++
T Consensus        88 ~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~---~~~L~~L~L~~n~l~~-lp-~~~~l~~  154 (454)
T 1jl5_A           88 E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLEK-LP-ELQNSSF  154 (454)
T ss_dssp             S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-C---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence            2   12456666666666654 3432   2455555555555543211 0   1345555555555443 33 2445555


Q ss_pred             ccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEccc
Q 043943          205 LVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSI  284 (775)
Q Consensus       205 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  284 (775)
                      |++|++++|.+++                         +|..+   .+|++|++++|.+++ +| .+..+++|++|++++
T Consensus       155 L~~L~l~~N~l~~-------------------------lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          155 LKIIDVDNNSLKK-------------------------LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN  204 (454)
T ss_dssp             CCEEECCSSCCSC-------------------------CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCcc-------------------------cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence            5555555555443                         22221   244455555554443 23 344455555555555


Q ss_pred             CcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCch
Q 043943          285 NRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIP  364 (775)
Q Consensus       285 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  364 (775)
                      |.+++ +|..   .++|++|++++|.++ .+| .+..+++|++|++++|++++ +|..   +++|+.|++++|.+.+ +|
T Consensus       205 N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~  273 (454)
T 1jl5_A          205 NSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LP  273 (454)
T ss_dssp             SCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CC
T ss_pred             CcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cC
Confidence            54443 2211   134555555555554 333 24555555555555555543 2221   2455555555555553 22


Q ss_pred             hhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCC
Q 043943          365 QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP  444 (775)
Q Consensus       365 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  444 (775)
                      ..   .++|+.|++++|.+++. +. +  .++|+.|++++|.+.+..     ...++|++|++++|++.+ +|..   ++
T Consensus       274 ~~---~~~L~~L~ls~N~l~~l-~~-~--~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~  337 (454)
T 1jl5_A          274 EL---PQSLTFLDVSENIFSGL-SE-L--PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PP  337 (454)
T ss_dssp             CC---CTTCCEEECCSSCCSEE-SC-C--CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             cc---cCcCCEEECcCCccCcc-cC-c--CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CC
Confidence            21   24555555555555541 11 0  145666666666665421     112477888888887775 3432   57


Q ss_pred             CCCEEEcccCcccccCCccccCCCCCcEEEccCCCccC--cCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEE
Q 043943          445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGG--KIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLD  522 (775)
Q Consensus       445 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  522 (775)
                      +|++|++++|.+++ +|.   .+++|++|++++|++.+  .+|..+..        ++.|.+.+.+|..   +++|+.|+
T Consensus       338 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~  402 (454)
T 1jl5_A          338 RLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLH  402 (454)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------
T ss_pred             cCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEE
Confidence            78888888888874 554   46788888888888887  55554432        2345666666652   57899999


Q ss_pred             CCCCcccc--cCCccccCcCCCCEEEccCCcCccCCchhHHhh
Q 043943          523 LSENRLSN--AIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL  563 (775)
Q Consensus       523 ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  563 (775)
                      +++|++++  .+|      .+++.|.+.+|.+.+.++......
T Consensus       403 ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~~  439 (454)
T 1jl5_A          403 VETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHETT  439 (454)
T ss_dssp             -------------------------------------------
T ss_pred             CCCCcCCccccch------hhHhheeCcCcccCCccccCHHHh
Confidence            99999886  444      346777888888877766554433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.2e-36  Score=331.01  Aligned_cols=363  Identities=18%  Similarity=0.215  Sum_probs=191.7

Q ss_pred             cccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCccc
Q 043943           96 FGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVI  175 (775)
Q Consensus        96 ~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l  175 (775)
                      .+..+..+.++++|++|++++|.+++. | .+..+++|++|++++|.+++. |  +..+++|++|++++|.+++. +  +
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~  102 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V  102 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred             CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c
Confidence            334455677778888888888877753 4 577778888888888877753 3  67777777777777777664 2  6


Q ss_pred             CCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcE
Q 043943          176 GNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRS  255 (775)
Q Consensus       176 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  255 (775)
                      ..+++|++|++++|.+++. +  ++.+++|++|++++|.+++.   .+..+++|++|++++|...+.+  .+..+++|++
T Consensus       103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~  174 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT  174 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred             CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence            6667777777777766642 2  56666666666666666653   2555666666666666433333  2445555555


Q ss_pred             EEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcC
Q 043943          256 LFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNL  335 (775)
Q Consensus       256 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  335 (775)
                      |++++|.+++ +|  +..+++|++|++++|.+++.   .+..+++|+.|++++|++++ +|  +.               
T Consensus       175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~---------------  230 (457)
T 3bz5_A          175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT---------------  230 (457)
T ss_dssp             EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT---------------
T ss_pred             EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc---------------
Confidence            5555555553 22  44555555555555555433   24444444444444444443 22  34               


Q ss_pred             cCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhh
Q 043943          336 TGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAF  415 (775)
Q Consensus       336 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  415 (775)
                               .+++|+.|++++|.+++..   +..+++|+.++++.|              +|+.+++++|.+.+.+|.  
T Consensus       231 ---------~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~--  282 (457)
T 3bz5_A          231 ---------PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA--  282 (457)
T ss_dssp             ---------TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC--
T ss_pred             ---------ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc--
Confidence                     4444444444444444321   223334444443332              233444444444443331  


Q ss_pred             hccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCC
Q 043943          416 VGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLN  495 (775)
Q Consensus       416 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  495 (775)
                       +.+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|++|++++|++++. +  +..+++|+
T Consensus       283 -~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~  342 (457)
T 3bz5_A          283 -EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLK  342 (457)
T ss_dssp             -TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCS
T ss_pred             -cccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCc
Confidence             3445555555555554444432   2233333333322             4555555555555542 2  45555555


Q ss_pred             EEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchh
Q 043943          496 KLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQ  559 (775)
Q Consensus       496 ~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  559 (775)
                      .|++++|++++        ++.|..|++++|.+.|.     ..+..|..+++++|+++|.+|..
T Consensus       343 ~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          343 SLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             EEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             EEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            55555555543        12344444555555443     12334444455555555555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.9e-36  Score=327.95  Aligned_cols=359  Identities=21%  Similarity=0.201  Sum_probs=275.3

Q ss_pred             cccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCC
Q 043943           77 FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSK  156 (775)
Q Consensus        77 ~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  156 (775)
                      ..+.++++|++|++++|.+++. | .+..+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  +.++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            4677899999999999999975 5 699999999999999999964 4  89999999999999999864 3  899999


Q ss_pred             CCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccc
Q 043943          157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM  236 (775)
Q Consensus       157 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  236 (775)
                      |++|++++|.+++. +  +..+++|++|++++|.+++. +  ++.+++|++|++++|...+.+  .+..+++|++|++++
T Consensus       108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            99999999999985 3  89999999999999999874 3  789999999999999655554  588999999999999


Q ss_pred             ccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCC
Q 043943          237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP  316 (775)
Q Consensus       237 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  316 (775)
                      |.+++ +|  +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +|  +..+++|+.|++++|++++.. 
T Consensus       180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-  249 (457)
T 3bz5_A          180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-  249 (457)
T ss_dssp             SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred             Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence            99986 44  88999999999999999865   38899999999999999997 45  788999999999999998753 


Q ss_pred             ccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCc
Q 043943          317 KEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN  396 (775)
Q Consensus       317 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  396 (775)
                        +..+++|+.|+++.|              +|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|.       
T Consensus       250 --~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~-------  304 (457)
T 3bz5_A          250 --VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC-------  304 (457)
T ss_dssp             --CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-------
T ss_pred             --HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-------
Confidence              456778888887664              34556677776665554  23445555555555544333331       


Q ss_pred             ccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEcc
Q 043943          397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLS  476 (775)
Q Consensus       397 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls  476 (775)
                                           ..++|+.|++++|             ++|++|++++|++++. +  +..+++|+.|+++
T Consensus       305 ---------------------~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~  347 (457)
T 3bz5_A          305 ---------------------QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCV  347 (457)
T ss_dssp             ---------------------TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECC
T ss_pred             ---------------------CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECC
Confidence                                 1234444443332             5666666666666653 2  6667777777777


Q ss_pred             CCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccc
Q 043943          477 SNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSL  536 (775)
Q Consensus       477 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~  536 (775)
                      +|++++        ++.|..|++++|.+.|.     ..+..|..+++++|+++|.+|..+
T Consensus       348 ~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          348 NAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             SSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             CCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence            777664        24455566777776654     234556667777777777776644

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=333.49  Aligned_cols=345  Identities=22%  Similarity=0.226  Sum_probs=249.3

Q ss_pred             CEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCC
Q 043943          278 SNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN  357 (775)
Q Consensus       278 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  357 (775)
                      +.++.+++.++ .+|..+  .++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            45566666555 334333  245666666666666555556666666666666666666555556666666666666666


Q ss_pred             cCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecC
Q 043943          358 ELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQIS  437 (775)
Q Consensus       358 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  437 (775)
                      .+.+..+..+.++++|+.|++++|                        .+.+..+..+ ..+++|++|++++|.+.+..+
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n------------------------~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~  145 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISEN------------------------KIVILLDYMF-QDLYNLKSLEVGDNDLVYISH  145 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTS------------------------CCCEECTTTT-TTCTTCCEEEECCTTCCEECT
T ss_pred             cCCccCcccccCCCCCCEEECCCC------------------------ccccCChhHc-cccccCCEEECCCCccceeCh
Confidence            555443344444555555555544                        4444444333 556677777777777777777


Q ss_pred             cCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCC
Q 043943          438 SDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTE  517 (775)
Q Consensus       438 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  517 (775)
                      ..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++.......+
T Consensus       146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence            77888888888888888888766667888888888888888888777777888888888888888877777776666678


Q ss_pred             CCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCC
Q 043943          518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLS  597 (775)
Q Consensus       518 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls  597 (775)
                      |++|++++|.++...+..+..+++|+.|+|++|.+++..+..+..++ +|+.|+|++|++++..|..|..+++|+.|+++
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT-TCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc-cCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence            88888888888866556788888888888888888877777777777 89999999999988888899999999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCcCCCC
Q 043943          598 YNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCG  651 (775)
Q Consensus       598 ~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~lc~  651 (775)
                      +|++++..+..|..+++|+.|++++|++.|.++..+.+.......+.++...|.
T Consensus       305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~  358 (477)
T 2id5_A          305 GNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCA  358 (477)
T ss_dssp             SSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEE
T ss_pred             CCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeC
Confidence            999998888888888999999999999998877554444433345566666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.9e-35  Score=323.20  Aligned_cols=346  Identities=28%  Similarity=0.403  Sum_probs=202.4

Q ss_pred             CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943           81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL  160 (775)
Q Consensus        81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  160 (775)
                      .+++++.|+++++.+.. +| .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +.++++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            34567777777776653 33 36667777777777777764433  6777777777777777764433  6777777777


Q ss_pred             EcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943          161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS  240 (775)
Q Consensus       161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  240 (775)
                      ++++|.+.+..+  +..+++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+.  ..+..+++|++|++++|.+.
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence            777776665533  6667777777777776653 22 36666777777765 333332  22666667777777666665


Q ss_pred             ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943          241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG  320 (775)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  320 (775)
                      +.  ..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +.
T Consensus       191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence            32  235666666666666666664433  55566666666666666543  235555666666666666554332  55


Q ss_pred             CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccce
Q 043943          321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRV  400 (775)
Q Consensus       321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  400 (775)
                      .+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +         
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~---------  327 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V---------  327 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G---------
T ss_pred             cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h---------
Confidence            55666666666665554433  4555556666665555554322  3444455555555444443322  2         


Q ss_pred             eccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCc
Q 043943          401 RMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHI  480 (775)
Q Consensus       401 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  480 (775)
                                      ..+++|++|++++|.+.+.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|.+
T Consensus       328 ----------------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          328 ----------------SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             ----------------GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             ----------------ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence                            3445555555555555443  245555666666666666655444  55566666666666655


Q ss_pred             cC
Q 043943          481 GG  482 (775)
Q Consensus       481 ~~  482 (775)
                      ++
T Consensus       388 ~~  389 (466)
T 1o6v_A          388 TN  389 (466)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.2e-35  Score=322.87  Aligned_cols=347  Identities=28%  Similarity=0.399  Sum_probs=246.7

Q ss_pred             cCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCE
Q 043943          104 SQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLST  183 (775)
Q Consensus       104 ~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  183 (775)
                      ..+++|++|+++++.+.. +| .+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+..+  +.++++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            346788899999888874 55 37788899999999998885543  8888888888888888876655  788888888


Q ss_pred             EeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccC
Q 043943          184 LDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL  263 (775)
Q Consensus       184 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  263 (775)
                      |++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|++. +.+.+..  .+..+++|+.|++++|.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence            8888887775433  77788888888888877653  247777777777775 3333222  266677777777777766


Q ss_pred             CCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcC
Q 043943          264 SGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSI  343 (775)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  343 (775)
                      ++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+  +
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  261 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L  261 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence            533  235666677777777766665433  45566666666666665532  234555555555555555554433  4


Q ss_pred             CCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCc
Q 043943          344 GNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLS  423 (775)
Q Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  423 (775)
                      ..+++|+.|++++|.+.+.                        .+  +..+++|+.|++++|.+.+..+   +..+++|+
T Consensus       262 ~~l~~L~~L~l~~n~l~~~------------------------~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~  312 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNI------------------------SP--LAGLTALTNLELNENQLEDISP---ISNLKNLT  312 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCC------------------------GG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCS
T ss_pred             hcCCCCCEEECCCCccCcc------------------------cc--ccCCCccCeEEcCCCcccCchh---hcCCCCCC
Confidence            4555555555555555432                        22  4445555555555555554433   36788999


Q ss_pred             EEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCc
Q 043943          424 FLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ  503 (775)
Q Consensus       424 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  503 (775)
                      .|++++|++.+..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|++.+..|  +..+++|+.|++++|+
T Consensus       313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred             EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence            99999999987765  78899999999999999875  578999999999999999998877  8899999999999999


Q ss_pred             Ccc
Q 043943          504 LFG  506 (775)
Q Consensus       504 ~~~  506 (775)
                      +++
T Consensus       387 ~~~  389 (466)
T 1o6v_A          387 WTN  389 (466)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            986

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.5e-35  Score=322.14  Aligned_cols=303  Identities=20%  Similarity=0.181  Sum_probs=254.3

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      +++++|+|++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            58999999999999888889999999999999999999888889999999999999999998666667889999999999


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA  242 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  242 (775)
                      ++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            99999988888899999999999999988887788888899999999999988877777788889999999999888887


Q ss_pred             CCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCC
Q 043943          243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL  322 (775)
Q Consensus       243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  322 (775)
                      .+..+..+++|+.|++++|...+.+|.......+|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence            77788888888888888887777777666666788888888888886555667788888888888888887777777788


Q ss_pred             CCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecc
Q 043943          323 KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRG  385 (775)
Q Consensus       323 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  385 (775)
                      ++|++|++++|++.+..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            888888888888887777777788888888888888776666666777777777777776653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.3e-34  Score=306.69  Aligned_cols=316  Identities=20%  Similarity=0.153  Sum_probs=255.7

Q ss_pred             CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943           81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL  160 (775)
Q Consensus        81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  160 (775)
                      .++++++|+++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            56899999999999886666668899999999999999987777789999999999999999998888889999999999


Q ss_pred             EcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943          161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS  240 (775)
Q Consensus       161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  240 (775)
                      ++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|++|++++|.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            9999999977777788999999999999999887788888999999999999998865   3566788999999998876


Q ss_pred             ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943          241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG  320 (775)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  320 (775)
                      +.     ...++|+.|++++|.++.. |..  ..++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+.
T Consensus       200 ~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          200 TL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             EE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            42     3446789999999888743 332  357889999999988754  5678888889999988888887788888


Q ss_pred             CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccce
Q 043943          321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRV  400 (775)
Q Consensus       321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  400 (775)
                      .+++|++|++++|++++. +..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++...   +..+++|+.|
T Consensus       270 ~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L  344 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL  344 (390)
T ss_dssp             TCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred             ccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEE
Confidence            888888888888888764 555677888888888888887 45666777788888888888876542   5556667777


Q ss_pred             eccccccccccchh
Q 043943          401 RMNQNNLSGNISEA  414 (775)
Q Consensus       401 ~l~~n~~~~~~~~~  414 (775)
                      ++++|.+.......
T Consensus       345 ~l~~N~~~~~~~~~  358 (390)
T 3o6n_A          345 TLSHNDWDCNSLRA  358 (390)
T ss_dssp             ECCSSCEEHHHHHH
T ss_pred             EcCCCCccchhHHH
Confidence            77776665543333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-33  Score=317.33  Aligned_cols=311  Identities=19%  Similarity=0.156  Sum_probs=244.8

Q ss_pred             CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943           81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL  160 (775)
Q Consensus        81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  160 (775)
                      .+++++.|++++|.+....+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..|..|.++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            46789999999999887766778889999999999999998888889999999999999999998888888999999999


Q ss_pred             EcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943          161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS  240 (775)
Q Consensus       161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  240 (775)
                      ++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..   +..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            99999998777777889999999999999988888888888999999999999888653   456788888888888776


Q ss_pred             ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943          241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG  320 (775)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  320 (775)
                      +     +....+|+.|++++|.++...+ .+  .++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|..+.
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             c-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            4     2344678888888888764322 22  36788888888888753  5677788888888888888877777888


Q ss_pred             CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccce
Q 043943          321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRV  400 (775)
Q Consensus       321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  400 (775)
                      .+++|+.|++++|.+++. |..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..   +..+++|+.|
T Consensus       276 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L  350 (597)
T 3oja_B          276 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL  350 (597)
T ss_dssp             TCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred             CccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEE
Confidence            888888888888888763 555667788888888888877 45666677777777777777766432   3444555555


Q ss_pred             ecccccccc
Q 043943          401 RMNQNNLSG  409 (775)
Q Consensus       401 ~l~~n~~~~  409 (775)
                      ++++|.+.+
T Consensus       351 ~l~~N~~~~  359 (597)
T 3oja_B          351 TLSHNDWDC  359 (597)
T ss_dssp             ECCSSCEEH
T ss_pred             EeeCCCCCC
Confidence            555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.4e-33  Score=296.63  Aligned_cols=334  Identities=19%  Similarity=0.196  Sum_probs=231.9

Q ss_pred             CCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEE
Q 043943          273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLL  352 (775)
Q Consensus       273 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  352 (775)
                      .+++++.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46889999999999987666667889999999999999988777789999999999999999998888888999999999


Q ss_pred             EccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccc
Q 043943          353 YLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF  432 (775)
Q Consensus       353 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l  432 (775)
                      ++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..    ...+++|+.|++++|.+
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeecccccc
Confidence            99999988655555788899999999999988877777888888888888888877542    24567788888877776


Q ss_pred             eeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCc
Q 043943          433 HGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI  512 (775)
Q Consensus       433 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~  512 (775)
                      .+.     ...++|++|++++|.+... |.  ...++|++|++++|.+++.  ..+..+++|++|++++|.+.+..|..+
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            543     2345677777777776643 22  2235677777777766643  356666667777777776666666666


Q ss_pred             cCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCc
Q 043943          513 GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLV  592 (775)
Q Consensus       513 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  592 (775)
                      ..+++|+.|++++|++++. |..+..+++|++|+|++|+++ .+|..+..++ +|+.|++++|.++              
T Consensus       269 ~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~L~L~~N~i~--------------  331 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIV--------------  331 (390)
T ss_dssp             TTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCCC--------------
T ss_pred             cccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccC-cCCEEECCCCccc--------------
Confidence            6666666666666666643 334455566666666666555 3444444444 5555555555544              


Q ss_pred             EEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCcCCCC
Q 043943          593 KLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCG  651 (775)
Q Consensus       593 ~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~lc~  651 (775)
                                ...   +..+++|+.|++++|++.+.... ..+..+....+.+++..|.
T Consensus       332 ----------~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~  376 (390)
T 3o6n_A          332 ----------TLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK  376 (390)
T ss_dssp             ----------CCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCC
T ss_pred             ----------eeC---chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceec
Confidence                      321   34445566666666666553321 2233444444556666665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.5e-33  Score=313.28  Aligned_cols=335  Identities=20%  Similarity=0.200  Sum_probs=236.1

Q ss_pred             CCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEE
Q 043943          273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLL  352 (775)
Q Consensus       273 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  352 (775)
                      .+.+++.+++++|.+....+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            36788999999999987777778889999999999999998888889999999999999999998888888999999999


Q ss_pred             EccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccc
Q 043943          353 YLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF  432 (775)
Q Consensus       353 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l  432 (775)
                      ++++|.+++..+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..    .+.+++|+.|++++|.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCcc
Confidence            99999998766666788999999999999998888888888888888888888877643    24567788888877776


Q ss_pred             eeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCc
Q 043943          433 HGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI  512 (775)
Q Consensus       433 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~  512 (775)
                      .+.     ...++|+.|++++|.+....+.   ..++|+.|++++|.+++.  ..+..+++|+.|+|++|.+.+..|..+
T Consensus       205 ~~l-----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          205 STL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             SEE-----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            643     3345677777777776643222   124667777777766642  456666666666666666666666666


Q ss_pred             cCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCc
Q 043943          513 GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLV  592 (775)
Q Consensus       513 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  592 (775)
                      ..+++|+.|+|++|.+++. |..+..+++|+.|+|++|.++ .+|..+..++ +|+.|+|++|.+               
T Consensus       275 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~-~L~~L~L~~N~l---------------  336 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSI---------------  336 (597)
T ss_dssp             TTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCC---------------
T ss_pred             cCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCC-CCCEEECCCCCC---------------
Confidence            6666666666666666653 344455556666666666555 3444444444 455555555544               


Q ss_pred             EEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCcCCCCC
Q 043943          593 KLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGD  652 (775)
Q Consensus       593 ~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~lc~~  652 (775)
                               ++..   +..+++|+.|++++|++.|.++. ..+..+....+.++...|+.
T Consensus       337 ---------~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          337 ---------VTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             ---------CCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred             ---------CCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence                     4331   34455667777777777665432 23445555566777778864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.4e-32  Score=285.72  Aligned_cols=305  Identities=24%  Similarity=0.407  Sum_probs=197.9

Q ss_pred             cCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCC
Q 043943           79 FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS  158 (775)
Q Consensus        79 ~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  158 (775)
                      +..+++|++|+++++.+... + .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++. ++ .+.++++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence            34567778888888777643 3 377778888888888877743 33 7778888888888887764 33 577777788


Q ss_pred             EEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccc
Q 043943          159 LLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH  238 (775)
Q Consensus       159 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  238 (775)
                      +|++++|.+.+..+  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            88887777775533  6777777777777775443333 36777777777777777665433  6677777777777777


Q ss_pred             ccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCcc
Q 043943          239 LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKE  318 (775)
Q Consensus       239 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  318 (775)
                      +.+..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  260 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA  260 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence            664322  6667777777777777764433  6667777777777777764433  66667777777777766643  34


Q ss_pred             CCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCccc
Q 043943          319 IGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLV  398 (775)
Q Consensus       319 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  398 (775)
                      +..+++|++|++++|++++.  ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|  +..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            66666677777777666653  235566666666666666666555666666666666666665554333  33444444


Q ss_pred             ceeccccc
Q 043943          399 RVRMNQNN  406 (775)
Q Consensus       399 ~L~l~~n~  406 (775)
                      .|++++|.
T Consensus       337 ~L~l~~N~  344 (347)
T 4fmz_A          337 SADFANQV  344 (347)
T ss_dssp             EESSSCC-
T ss_pred             eeehhhhc
Confidence            44444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.6e-31  Score=281.99  Aligned_cols=307  Identities=25%  Similarity=0.397  Sum_probs=204.3

Q ss_pred             ccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCc
Q 043943          271 IGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLR  350 (775)
Q Consensus       271 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  350 (775)
                      +..+++|++|++++|.+... + .+..+++|++|++++|.+++.. . +..+++|++|++++|.++.. + .+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~~-~-~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITDI-S-ALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccCc-h-HHcCCCcCC
Confidence            45678888888888887743 3 3677888888888888877543 2 77778888888888877753 2 467777777


Q ss_pred             EEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCc
Q 043943          351 LLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHN  430 (775)
Q Consensus       351 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  430 (775)
                      +|++++|.+.+..+  +..+++|+.|++++|.....++ .+                         ..+++|++|++++|
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~-------------------------~~l~~L~~L~l~~~  165 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PL-------------------------SNMTGLNYLTVTES  165 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GG-------------------------TTCTTCCEEECCSS
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-ch-------------------------hhCCCCcEEEecCC
Confidence            77777777764332  5666666666666664332222 13                         44555555555555


Q ss_pred             cceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCc
Q 043943          431 NFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPP  510 (775)
Q Consensus       431 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  510 (775)
                      .+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|++++..+ 
T Consensus       166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             CCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             CcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence            5543322  5556666666666666654322  5666677777777776665433  6666777777777777764322 


Q ss_pred             CccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCC
Q 043943          511 EIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMES  590 (775)
Q Consensus       511 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~  590 (775)
                       +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..++ +|+.|++++|.+++..|..++.+++
T Consensus       239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCC-CCCEEECcCCcCCCcChhHhhcccc
Confidence             66777777777777777653  3566777777777777777653  3455555 7778888888777777777778888


Q ss_pred             CcEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 043943          591 LVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ  626 (775)
Q Consensus       591 L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~  626 (775)
                      |+.|++++|++++..|  +..+++|+.|++++|+++
T Consensus       313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888888888777666  677788888888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=4.4e-33  Score=289.82  Aligned_cols=283  Identities=21%  Similarity=0.270  Sum_probs=166.1

Q ss_pred             CCCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCcccceeeCC---------CCCEEEEEcCCCCCccccCc
Q 043943            6 SSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNH---------DERVVGINLTTTSLNGTLDE   76 (775)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~w~gv~c~~---------~~~v~~l~l~~~~~~~~~~~   76 (775)
                      +.+..+|++||++||+++..++.+.+.+|...  .....++|.|.|+.|..         ..+|+.++|+++.+. .+| 
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~--~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp-   97 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQA--NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP-   97 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHH--TTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC-
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhccc--ccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC-
Confidence            44557899999999999977776667778310  01356889999999952         245555555555554 344 


Q ss_pred             cccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCC
Q 043943           77 FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSK  156 (775)
Q Consensus        77 ~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  156 (775)
                      ..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+...  
T Consensus        98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~--  173 (328)
T 4fcg_A           98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST--  173 (328)
T ss_dssp             SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE--
T ss_pred             hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc--
Confidence            33444555555555555554 44444555555555555555554 444445555555555555544444444433320  


Q ss_pred             CCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccc
Q 043943          157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM  236 (775)
Q Consensus       157 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  236 (775)
                                   ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++
T Consensus       174 -------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          174 -------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             -------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred             -------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence                         00011223566666666666655 455556666666666666666664 344466666666666666


Q ss_pred             ccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccc
Q 043943          237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL  311 (775)
Q Consensus       237 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  311 (775)
                      |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            666666666666666666666666666666666666666666666666666666666666666666666655443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.6e-32  Score=282.41  Aligned_cols=252  Identities=25%  Similarity=0.455  Sum_probs=196.7

Q ss_pred             ccceecccccccc--ccchhhhccCCCCcEEeCCC-ccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEE
Q 043943          397 LVRVRMNQNNLSG--NISEAFVGTYPTLSFLDLSH-NNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVL  473 (775)
Q Consensus       397 L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  473 (775)
                      ++.|++++|.+.+  .++..+ ..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            4444444444444  344433 5566666666663 66666677777777777777777777777777777788888888


Q ss_pred             EccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCC-CCCEEECCCCcccccCCccccCcCCCCEEEccCCcC
Q 043943          474 NLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLT-ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF  552 (775)
Q Consensus       474 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  552 (775)
                      ++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..+. |+.|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            8888888777777788888888888888888777787777777 788888888888877787777776 88888888888


Q ss_pred             ccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCC
Q 043943          553 SHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS  632 (775)
Q Consensus       553 ~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~  632 (775)
                      ++..|..+..++ +|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus       210 ~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          210 EGDASVLFGSDK-NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EECCGGGCCTTS-CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cCcCCHHHhcCC-CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            887787777777 888888888888866665 778889999999999999889998999999999999999999989887


Q ss_pred             CcCCCCCccccCCCcCCCCC
Q 043943          633 KAFRDAPAEALQGNRGLCGD  652 (775)
Q Consensus       633 ~~~~~~~~~~~~gn~~lc~~  652 (775)
                      ..+..+....+.+|+.+|+.
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEEST
T ss_pred             ccccccChHHhcCCCCccCC
Confidence            77777888888899999984

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.1e-30  Score=268.95  Aligned_cols=223  Identities=24%  Similarity=0.326  Sum_probs=121.9

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence            56777777777777666666777777777777777777666777777777777777777766 3444433  56666666


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcc--cCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIG--SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS  240 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  240 (775)
                      ++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.++.. |..+.  ++|++|++++|.+.
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~  205 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKIT  205 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCC
Confidence            6666665555556666666666666665532  3344455555555555555555432 22221  44444444444444


Q ss_pred             ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcccc
Q 043943          241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS  312 (775)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  312 (775)
                      +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.++..+++|++|++++|.++
T Consensus       206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            444444444444444444444444333333444444444444444444 23333334444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.8e-30  Score=270.31  Aligned_cols=286  Identities=24%  Similarity=0.283  Sum_probs=148.2

Q ss_pred             CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943           84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY  163 (775)
Q Consensus        84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  163 (775)
                      +++.++++++.++ .+|..+  .++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3455555555544 333333  2455555555555554444455555555555555555554445555555555555555


Q ss_pred             cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCc--cccCccCCCCCCCCEEEcccccccc
Q 043943          164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS--GFIPSTLGKLKCLSNLNMSMNHLSG  241 (775)
Q Consensus       164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~  241 (775)
                      +|.++.. |..+.  ++|++|++++|.+....+..+..+++|++|++++|.++  +..+..+..+ +|++|++++|.+++
T Consensus       111 ~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            5555432 22222  45555555555555444444555555555555555553  2444455555 55666666555553


Q ss_pred             cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943          242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN  321 (775)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  321 (775)
                       +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence             333332  45556666666655555555555666666666666665555555555556666666666555 44555555


Q ss_pred             CCCCCeeeCcCCcCcCccCCcCCC------CCcCcEEEccCCcCC--CCchhhccCCCCCcEEEecc
Q 043943          322 LKCLFDLELSMNNLTGVIPSSIGN------LRNLRLLYLYRNELS--GSIPQAIGNLVELVSLLLGF  380 (775)
Q Consensus       322 l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~  380 (775)
                      +++|++|++++|++++..+..|..      .+.|+.|++++|.+.  +..|..+..+++|+.+++++
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence            566666666666655544444432      234555555555544  23334444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.6e-30  Score=268.06  Aligned_cols=267  Identities=23%  Similarity=0.284  Sum_probs=201.6

Q ss_pred             CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEec
Q 043943          107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDL  186 (775)
Q Consensus       107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  186 (775)
                      .+|++++++++.+. .+|..+  .++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            36899999999888 567655  368999999999998777788999999999999999999888888999999999999


Q ss_pred             cCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc--cCCccccCCCCCcEEEcccccCC
Q 043943          187 SLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG--AIPSSIGNVRNLRSLFLYSNELS  264 (775)
Q Consensus       187 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~  264 (775)
                      ++|.+. .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+..  ..+..+..+ +|++|++++|.++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            999887 4554443  788999999998887777778888888888888888853  566667766 7888888888877


Q ss_pred             CCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCC
Q 043943          265 GSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIG  344 (775)
Q Consensus       265 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  344 (775)
                      + +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+.
T Consensus       186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence            4 454443  67777888888777776677777777777777777777666666777777777777777777 4566667


Q ss_pred             CCCcCcEEEccCCcCCCCchhhccCC------CCCcEEEeccceec
Q 043943          345 NLRNLRLLYLYRNELSGSIPQAIGNL------VELVSLLLGFNYFR  384 (775)
Q Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~  384 (775)
                      .+++|+.|++++|.+++..+..+...      ..|+.+++.+|.+.
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            77777777777777765544444332      33444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9.7e-30  Score=266.08  Aligned_cols=250  Identities=22%  Similarity=0.302  Sum_probs=159.8

Q ss_pred             CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943           84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY  163 (775)
Q Consensus        84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  163 (775)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            6778888887776 3454443  578888888888876666677888888888888888877667777777888888887


Q ss_pred             cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCcc--ccCccCCCCCCCCEEEcccccccc
Q 043943          164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSG--FIPSTLGKLKCLSNLNMSMNHLSG  241 (775)
Q Consensus       164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~  241 (775)
                      +|.++.. |..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.+. 
T Consensus       109 ~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-  184 (330)
T 1xku_A          109 KNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  184 (330)
T ss_dssp             SSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence            7777643 33222  567777777777665555566667777777777766642  45556666666666666666665 


Q ss_pred             cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943          242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN  321 (775)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  321 (775)
                      .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..
T Consensus       185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence            2333332  55666666666665555555666666666666666665555555555556666666666555 44445555


Q ss_pred             CCCCCeeeCcCCcCcCccCCcC
Q 043943          322 LKCLFDLELSMNNLTGVIPSSI  343 (775)
Q Consensus       322 l~~L~~L~l~~n~l~~~~~~~~  343 (775)
                      +++|++|++++|++++..+..|
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSS
T ss_pred             CCCcCEEECCCCcCCccChhhc
Confidence            5555555555555554444333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.4e-33  Score=310.54  Aligned_cols=380  Identities=18%  Similarity=0.123  Sum_probs=221.1

Q ss_pred             CCCCEEEcccccccccCCcc-ccCCCCCcEEEcccccCCC----CCCccccCCCCCCEEEcccCcccccCCccC-CCCC-
Q 043943          227 KCLSNLNMSMNHLSGAIPSS-IGNVRNLRSLFLYSNELSG----SIPKEIGNLRSLSNLDLSINRLNGVIPSSI-GNSN-  299 (775)
Q Consensus       227 ~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~-  299 (775)
                      ++|++|++++|.++...... +..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            45677777777766443322 5567777777777777663    234556667777777777777664333222 1233 


Q ss_pred             ---CCCeeeccCccccC----CCCccCCCCCCCCeeeCcCCcCcCccCCc-----CCCCCcCcEEEccCCcCCCCchhhc
Q 043943          300 ---NLSILYLYSNQLSG----SIPKEIGNLKCLFDLELSMNNLTGVIPSS-----IGNLRNLRLLYLYRNELSGSIPQAI  367 (775)
Q Consensus       300 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~  367 (775)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..     ....++|++|++++|.+++..... 
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-  161 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP-  161 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH-
Confidence               56666666666653    23555566666666666666655432211     112345566666655555422111 


Q ss_pred             cCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhh----ccCCCCcEEeCCCccceee----cCcC
Q 043943          368 GNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFV----GTYPTLSFLDLSHNNFHGQ----ISSD  439 (775)
Q Consensus       368 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~l~~~----~~~~  439 (775)
                                         ++..+..+++|+.|++++|.+.......+.    ...++|++|++++|.+++.    ++..
T Consensus       162 -------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          162 -------------------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             -------------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             -------------------HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence                               122233344444444444444333222221    1244666666666666542    3444


Q ss_pred             cCCCCCCCEEEcccCcccccC-----CccccCCCCCcEEEccCCCccCc----CChhhhcCCCCCEEEcCCCcCcccCCc
Q 043943          440 WGRFPQLGTLDFSVNNITGSI-----PPEIGNSSKLQVLNLSSNHIGGK----IPMELGRLSSLNKLILNKNQLFGSLPP  510 (775)
Q Consensus       440 ~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~  510 (775)
                      +..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            555667777777777665432     22233567777777777777653    455566677777777777777544332


Q ss_pred             Ccc-----CCCCCCEEECCCCccccc----CCccccCcCCCCEEEccCCcCccCCchhHHhh----hccccEEECcCCcC
Q 043943          511 EIG-----TLTELELLDLSENRLSNA----IPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL----QLQLSELDLSQNFL  577 (775)
Q Consensus       511 ~~~-----~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----~~~L~~L~Ls~n~l  577 (775)
                      .+.     ..++|++|++++|.+++.    ++..+..+++|++|+|++|.+++..+..+...    .++|+.|++++|.+
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            222     235777888888777654    34455666788888888887776655555431    12788888888887


Q ss_pred             cc----cCCccccCCCCCcEEeCCCCcCcccCCccc-----cCCCCCCEEeCCCCccc
Q 043943          578 EG----EIPSQICNMESLVKLNLSYNQLSGFIPNCF-----EDMHGLSSIDISYNRLQ  626 (775)
Q Consensus       578 ~~----~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l-----~~l~~L~~l~ls~n~l~  626 (775)
                      ++    .+|..+..+++|++|++++|++++.....+     .....|+.|++.++.+.
T Consensus       383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            75    667777778888888888887775422211     12345777777666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=9.8e-34  Score=311.70  Aligned_cols=158  Identities=22%  Similarity=0.209  Sum_probs=88.1

Q ss_pred             CCCCEEeccCCcCcccCCcc-cCCCCCccEEEcccccCcc----ccCccCCCCCCCCEEEcccccccccCCccc-cCCC-
Q 043943          179 ISLSTLDLSLNQLIGSVPFF-LGNLTNLVTLHLFNNSLSG----FIPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNVR-  251 (775)
Q Consensus       179 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~-  251 (775)
                      ++|++|++++++++...... +..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46777888777765433222 5567777778877777663    234556667777777777777654333222 1233 


Q ss_pred             ---CCcEEEcccccCCC----CCCccccCCCCCCEEEcccCcccccCCccC-----CCCCCCCeeeccCccccCCC----
Q 043943          252 ---NLRSLFLYSNELSG----SIPKEIGNLRSLSNLDLSINRLNGVIPSSI-----GNSNNLSILYLYSNQLSGSI----  315 (775)
Q Consensus       252 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~----  315 (775)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               57777777776653    335556666666666666666654322221     12334555555555554321    


Q ss_pred             CccCCCCCCCCeeeCcCCcCc
Q 043943          316 PKEIGNLKCLFDLELSMNNLT  336 (775)
Q Consensus       316 ~~~~~~l~~L~~L~l~~n~l~  336 (775)
                      +..+..+++|++|++++|.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHhhCCCCCEEECcCCCcc
Confidence            222333444555555544443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=6.9e-29  Score=256.72  Aligned_cols=284  Identities=22%  Similarity=0.221  Sum_probs=208.7

Q ss_pred             CCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCC--
Q 043943           45 NLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK--  122 (775)
Q Consensus        45 ~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~--  122 (775)
                      ..|.|.++.|...+           +. .+| .  .-.++|++|++++|.++...+..|.++++|++|++++|.+...  
T Consensus         5 C~C~~~~l~c~~~~-----------l~-~ip-~--~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~   69 (306)
T 2z66_A            5 CSCSGTEIRCNSKG-----------LT-SVP-T--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC   69 (306)
T ss_dssp             CEEETTEEECCSSC-----------CS-SCC-S--CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred             CeeCCCEEEcCCCC-----------cc-cCC-C--CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence            44899999996421           11 233 1  2236899999999999865556688999999999999988733  


Q ss_pred             CchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEeccCCcCcccCCcccCC
Q 043943          123 IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIP-PVIGNLISLSTLDLSLNQLIGSVPFFLGN  201 (775)
Q Consensus       123 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  201 (775)
                      .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus        70 ~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  148 (306)
T 2z66_A           70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  148 (306)
T ss_dssp             EEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred             cccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence            3667778999999999999988 567778889999999999998887665 57788888888888888887777777888


Q ss_pred             CCCccEEEcccccCcc-ccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEE
Q 043943          202 LTNLVTLHLFNNSLSG-FIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNL  280 (775)
Q Consensus       202 l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  280 (775)
                      +++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            8888888888888776 567778888888888888888887777777788888888888888876666667777888888


Q ss_pred             EcccCcccccCCccCCCCC-CCCeeeccCccccCCCCc--cCCCCCCCCeeeCcCCcCcCccCCcCC
Q 043943          281 DLSINRLNGVIPSSIGNSN-NLSILYLYSNQLSGSIPK--EIGNLKCLFDLELSMNNLTGVIPSSIG  344 (775)
Q Consensus       281 ~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~  344 (775)
                      ++++|.+++..+..+..++ +|++|++++|.+++....  ....+...+.+.+..+.+....|..+.
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~  295 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ  295 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence            8888888777777777763 777777777777643210  011122333444444445444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8e-29  Score=261.65  Aligned_cols=288  Identities=20%  Similarity=0.234  Sum_probs=185.6

Q ss_pred             CCCCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCC
Q 043943           42 TKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG  121 (775)
Q Consensus        42 ~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~  121 (775)
                      .....|.|.|+ |+         .+++.+. .+| ..  -.++|++|++++|.+++..+..|.++++|++|++++|.+++
T Consensus        25 ~~~~~C~~~~~-c~---------~~~~~l~-~iP-~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~   90 (353)
T 2z80_A           25 QASLSCDRNGI-CK---------GSSGSLN-SIP-SG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT   90 (353)
T ss_dssp             --CCEECTTSE-EE---------CCSTTCS-SCC-TT--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred             ccCCCCCCCeE-ee---------CCCCCcc-ccc-cc--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc
Confidence            45677899887 53         2333333 333 22  22578888888888887666678888888888888888887


Q ss_pred             CCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEeccCCc-CcccCCccc
Q 043943          122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIP-PVIGNLISLSTLDLSLNQ-LIGSVPFFL  199 (775)
Q Consensus       122 ~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~~  199 (775)
                      ..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+ ..+..+++|++|++++|. +....+..+
T Consensus        91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  170 (353)
T 2z80_A           91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF  170 (353)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence            777778888888888888888875544557777888888887777775544 466677777777777763 444445566


Q ss_pred             CCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCE
Q 043943          200 GNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN  279 (775)
Q Consensus       200 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  279 (775)
                      .++++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..      
T Consensus       171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------  244 (353)
T 2z80_A          171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------  244 (353)
T ss_dssp             TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------
T ss_pred             cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc------
Confidence            66666777777666666666666666666666666666654332222334556666666666655433322211      


Q ss_pred             EEcccCcccccCCccCCCCCCCCeeeccCccccC----CCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEcc
Q 043943          280 LDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG----SIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLY  355 (775)
Q Consensus       280 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  355 (775)
                                     ......++.+++.++.+++    .+|..+..+++|++|++++|+++...+..|..+++|++|+++
T Consensus       245 ---------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~  309 (353)
T 2z80_A          245 ---------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH  309 (353)
T ss_dssp             -----------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ---------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEee
Confidence                           1123344445555544443    345567778888888888888875444445788888888888


Q ss_pred             CCcCCCCch
Q 043943          356 RNELSGSIP  364 (775)
Q Consensus       356 ~n~l~~~~~  364 (775)
                      +|++.+..|
T Consensus       310 ~N~~~~~~~  318 (353)
T 2z80_A          310 TNPWDCSCP  318 (353)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCccCcCC
Confidence            888877654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=4.8e-31  Score=300.00  Aligned_cols=304  Identities=14%  Similarity=0.021  Sum_probs=139.3

Q ss_pred             CCCCCCEEEcccCcccc----cCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCc---CccCCcCCC
Q 043943          273 NLRSLSNLDLSINRLNG----VIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLT---GVIPSSIGN  345 (775)
Q Consensus       273 ~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~  345 (775)
                      .+++|++|++++|.+++    .++..+..+++|+.|++++|.+.+ ++..+..+++|++|+++.....   ...+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            34444444444444431    112222334444455554444443 3333444455555554432111   112233444


Q ss_pred             CCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCC-ccCcCCCcccceeccccccccccchhhhccCCCCcE
Q 043943          346 LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIP-KNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSF  424 (775)
Q Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  424 (775)
                      +++|+.|+++++. ...+|..+..+++|+.|++++|.+++... ..+..+++|+.|++. +.+.......+...+++|++
T Consensus       269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred             cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence            5555555555432 22344444555555555555555432221 223445555555555 33332222333345566666


Q ss_pred             EeCCC-----------ccceeec-CcCcCCCCCCCEEEcccCcccccCCccccC-CCCCcEEEcc----CCCccCc----
Q 043943          425 LDLSH-----------NNFHGQI-SSDWGRFPQLGTLDFSVNNITGSIPPEIGN-SSKLQVLNLS----SNHIGGK----  483 (775)
Q Consensus       425 L~l~~-----------n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~Ls----~n~l~~~----  483 (775)
                      |++++           +.+++.. ......+++|++|+++.+.+++..+..+.. +++|+.|+++    .|.+++.    
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            66662           2333211 111233566666666555555544444433 5666666664    3444432    


Q ss_pred             -CChhhhcCCCCCEEEcCCCc--CcccCCcCc-cCCCCCCEEECCCCccccc-CCccccCcCCCCEEEccCCcCccCCch
Q 043943          484 -IPMELGRLSSLNKLILNKNQ--LFGSLPPEI-GTLTELELLDLSENRLSNA-IPGSLGNLLKVHYLNLSNNEFSHKIPT  558 (775)
Q Consensus       484 -~~~~l~~l~~L~~L~L~~n~--~~~~~~~~~-~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~  558 (775)
                       ++..+..+++|++|++++|.  +++..+..+ ..+++|++|++++|++++. .+..+..+++|++|+|++|.+++....
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  506 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA  506 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence             22234456666666665432  333222222 2355566666666665542 223335556666666666665443222


Q ss_pred             h-HHhhhccccEEECcCCcCccc
Q 043943          559 Q-FEKLQLQLSELDLSQNFLEGE  580 (775)
Q Consensus       559 ~-~~~l~~~L~~L~Ls~n~l~~~  580 (775)
                      . +..++ +|+.|++++|++++.
T Consensus       507 ~~~~~l~-~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          507 AAVTKLP-SLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHCS-SCCEEEEESCBCCTT
T ss_pred             HHHHhcC-ccCeeECcCCcCCHH
Confidence            2 23333 555666665555533

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.4e-31  Score=301.26  Aligned_cols=416  Identities=15%  Similarity=0.066  Sum_probs=235.3

Q ss_pred             CchhccCCCCCCEEECCCcccc---ccCccccc------------CCCCCCEEEcccCcCcccCCcccCC-CCC-CCEEe
Q 043943          123 IPPEIGQLSFLSELSLYSNCLN---GSIPQSLG------------NLSKQSLLSLYNNSLSGYIPPVIGN-LIS-LSTLD  185 (775)
Q Consensus       123 ~p~~~~~l~~L~~L~L~~n~~~---~~~~~~~~------------~l~~L~~L~l~~n~~~~~~~~~l~~-l~~-L~~L~  185 (775)
                      .+..+..+++|++|+++++...   +.+|..+.            .+++|++|++++|.+++..+..+.. +++ |++|+
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            4445677888999999876431   22332222            4555555555555554443333333 222 55555


Q ss_pred             ccCCcC-cc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccC
Q 043943          186 LSLNQL-IG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL  263 (775)
Q Consensus       186 l~~n~~-~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  263 (775)
                      +++|.. .. .++....++++|++|++++|.+++....+                    ++..+..+++|++|++++|.+
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~--------------------l~~~~~~~~~L~~L~L~~n~~  204 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW--------------------LHELAQHNTSLEVLNFYMTEF  204 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH--------------------HHHHHHHCCCCCEEECTTCCC
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH--------------------HHHHHhcCCCccEEEeeccCC
Confidence            554431 10 01111123444555555544443221110                    111223344555555555544


Q ss_pred             CC----CCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcccc---CCCCccCCCCCCCCeeeCcCCcCc
Q 043943          264 SG----SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS---GSIPKEIGNLKCLFDLELSMNNLT  336 (775)
Q Consensus       264 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~  336 (775)
                      ++    .++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....   +..+..+..+++|+.|+++++.. 
T Consensus       205 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-  282 (592)
T 3ogk_B          205 AKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-  282 (592)
T ss_dssp             SSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-
T ss_pred             CccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-
Confidence            31    122223345555555555555443 3344445555555555432211   12223445556666666665422 


Q ss_pred             CccCCcCCCCCcCcEEEccCCcCCCCch-hhccCCCCCcEEEeccceecccCCccCcCCCcccceeccc-----------
Q 043943          337 GVIPSSIGNLRNLRLLYLYRNELSGSIP-QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQ-----------  404 (775)
Q Consensus       337 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------  404 (775)
                      ..+|..+..+++|++|++++|.+++... ..+..+++|+.|++.++...+.++.....+++|+.|++++           
T Consensus       283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~  362 (592)
T 3ogk_B          283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE  362 (592)
T ss_dssp             TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred             hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence            2345555566677777777776543322 3346677777777763322222333345567777777773           


Q ss_pred             cccccccchhhhccCCCCcEEeCCCccceeecCcCcCC-CCCCCEEEcc----cCccccc-----CCccccCCCCCcEEE
Q 043943          405 NNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGR-FPQLGTLDFS----VNNITGS-----IPPEIGNSSKLQVLN  474 (775)
Q Consensus       405 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~  474 (775)
                      +.+++.....+...+++|++|+++.+.+++.....+.. +++|+.|+++    .|.+++.     ++..+..+++|++|+
T Consensus       363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~  442 (592)
T 3ogk_B          363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA  442 (592)
T ss_dssp             CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence            44554434444456888888888777777665555554 7888888886    5566653     334467789999999


Q ss_pred             ccCCC--ccCcCChhhh-cCCCCCEEEcCCCcCccc-CCcCccCCCCCCEEECCCCccccc-CCccccCcCCCCEEEccC
Q 043943          475 LSSNH--IGGKIPMELG-RLSSLNKLILNKNQLFGS-LPPEIGTLTELELLDLSENRLSNA-IPGSLGNLLKVHYLNLSN  549 (775)
Q Consensus       475 Ls~n~--l~~~~~~~l~-~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~  549 (775)
                      +++|.  +++..+..+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++. .+.....+++|++|+|++
T Consensus       443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~  522 (592)
T 3ogk_B          443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG  522 (592)
T ss_dssp             EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred             EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence            97654  5555444443 488999999999998763 344557889999999999998654 333446789999999999


Q ss_pred             CcCccCCchhH
Q 043943          550 NEFSHKIPTQF  560 (775)
Q Consensus       550 n~l~~~~~~~~  560 (775)
                      |++++.....+
T Consensus       523 n~it~~~~~~l  533 (592)
T 3ogk_B          523 YRASMTGQDLM  533 (592)
T ss_dssp             CBCCTTCTTGG
T ss_pred             CcCCHHHHHHH
Confidence            99886644433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.4e-28  Score=257.99  Aligned_cols=281  Identities=20%  Similarity=0.165  Sum_probs=201.0

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      +.....+.+++.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            34445777888877 4555443  47888888888888666667888888888888888888777777888888888888


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcccCC-cccCCCCCccEEEccccc-CccccCccCCCCCCCCEEEccccccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP-FFLGNLTNLVTLHLFNNS-LSGFIPSTLGKLKCLSNLNMSMNHLS  240 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~  240 (775)
                      ++|.+++..+..+.++++|++|++++|.+....+ ..+..+++|++|++++|. +....+..|..+++|++|++++|.+.
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            8888887666667788888888888887774433 366777778888877773 56565667777777777777777777


Q ss_pred             ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943          241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG  320 (775)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  320 (775)
                      +..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..                     ..
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~  246 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------------GE  246 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------
T ss_pred             ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------------cc
Confidence            666777777777777777777765322222334666666666666665433222111                     12


Q ss_pred             CCCCCCeeeCcCCcCcC----ccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccC
Q 043943          321 NLKCLFDLELSMNNLTG----VIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI  387 (775)
Q Consensus       321 ~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  387 (775)
                      ..+.++.++++++.+.+    .+|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..
T Consensus       247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            34567788888887765    35677889999999999999999544444689999999999999988654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.1e-27  Score=247.80  Aligned_cols=248  Identities=23%  Similarity=0.215  Sum_probs=144.5

Q ss_pred             CEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCcccccc--CcccccCCCCCCEEEcc
Q 043943           86 LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGS--IPQSLGNLSKQSLLSLY  163 (775)
Q Consensus        86 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~  163 (775)
                      +.++.+++.++ .+|..+.  ++|++|++++|.+....+..|.++++|++|++++|.++..  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            46777777776 4454332  5788888888888754444577888888888888877632  24556667777777777


Q ss_pred             cCcCcccCCcccCCCCCCCEEeccCCcCcccCC-cccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc-
Q 043943          164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP-FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG-  241 (775)
Q Consensus       164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-  241 (775)
                      +|.+.. ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ 
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            776663 34446666666666666666654433 345555666666666666555555555555555555555555543 


Q ss_pred             cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943          242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN  321 (775)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  321 (775)
                      ..|..+..+++|++|++++|.+++..|..+..++                        +|++|++++|.+++..+..+..
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------------------------~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------------------------SLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------------------------TCCEEECTTSCCSBCCSGGGTT
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC------------------------CCCEEECCCCccCccChhhccC
Confidence            3444444455555555555544444444444444                        4444444444444433334445


Q ss_pred             CCCCCeeeCcCCcCcCccCCcCCCCC-cCcEEEccCCcCCC
Q 043943          322 LKCLFDLELSMNNLTGVIPSSIGNLR-NLRLLYLYRNELSG  361 (775)
Q Consensus       322 l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~  361 (775)
                      +++|++|++++|++.+..+..+..++ +|+.|++++|.+.+
T Consensus       222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            55555555555555555555555553 56666666665544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.7e-27  Score=241.88  Aligned_cols=225  Identities=23%  Similarity=0.245  Sum_probs=183.7

Q ss_pred             EEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCC
Q 043943           61 VGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYS  140 (775)
Q Consensus        61 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~  140 (775)
                      +.++.++.++.. +|   ..-.++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~-ip---~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSS-CC---TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCccc-CC---cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            344455555442 33   22356899999999999887778889999999999999999877788899999999999999


Q ss_pred             cc-ccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCcccc
Q 043943          141 NC-LNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI  219 (775)
Q Consensus       141 n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  219 (775)
                      |. +....|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            97 77666788888999999999999988888888888889999999988888766667888888888888888888777


Q ss_pred             CccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccc
Q 043943          220 PSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG  289 (775)
Q Consensus       220 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  289 (775)
                      +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            7778888888888888888887778888888888888888888887666667888888888888887764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.2e-27  Score=242.58  Aligned_cols=225  Identities=24%  Similarity=0.211  Sum_probs=167.9

Q ss_pred             CEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccC
Q 043943           86 LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNN  165 (775)
Q Consensus        86 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n  165 (775)
                      +.++.+++.++ .+|..+  .++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            67778887776 345433  468888888888888766677888888888888888888777778888888888888888


Q ss_pred             c-CcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCC
Q 043943          166 S-LSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP  244 (775)
Q Consensus       166 ~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  244 (775)
                      . +....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            6 666667777788888888888887776667777777788888888777776666667777777777777777776555


Q ss_pred             ccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccC
Q 043943          245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG  313 (775)
Q Consensus       245 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  313 (775)
                      ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            567777777777777777776666677777777777777777776555556666777777777776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.1e-26  Score=251.66  Aligned_cols=90  Identities=27%  Similarity=0.320  Sum_probs=45.6

Q ss_pred             ccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCc
Q 043943          271 IGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLR  350 (775)
Q Consensus       271 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  350 (775)
                      +..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            33444444444444444444444444444444455544444444444455555555555555555544444455555555


Q ss_pred             EEEccCCcCC
Q 043943          351 LLYLYRNELS  360 (775)
Q Consensus       351 ~L~l~~n~l~  360 (775)
                      .|++++|.+.
T Consensus       294 ~L~L~~Np~~  303 (452)
T 3zyi_A          294 ELHLHHNPWN  303 (452)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEccCCCcC
Confidence            6666555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3.8e-27  Score=245.06  Aligned_cols=234  Identities=23%  Similarity=0.221  Sum_probs=140.8

Q ss_pred             CCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEE
Q 043943           82 FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLS  161 (775)
Q Consensus        82 l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  161 (775)
                      .+++++|++++|.++ .+|..+.++++|++|+|++|.+. .+|..++.+++|++|++++|.++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            456666666666666 45555666666666666666666 56666666666666666666666 5565666666666666


Q ss_pred             cccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc
Q 043943          162 LYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG  241 (775)
Q Consensus       162 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  241 (775)
                      +++|.+.+.+|..+..      .         ..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+. 
T Consensus       157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-  219 (328)
T 4fcg_A          157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-  219 (328)
T ss_dssp             EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred             CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence            6665555444443221      0         01122345666777777776666 45556666666666666666666 


Q ss_pred             cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943          242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN  321 (775)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  321 (775)
                      .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence            34445666666666666666666666666666666666666666666566655666666666666666665566666666


Q ss_pred             CCCCCeeeCcCCcC
Q 043943          322 LKCLFDLELSMNNL  335 (775)
Q Consensus       322 l~~L~~L~l~~n~l  335 (775)
                      +++|+.+++..+.+
T Consensus       300 L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          300 LPANCIILVPPHLQ  313 (328)
T ss_dssp             SCTTCEEECCGGGS
T ss_pred             ccCceEEeCCHHHH
Confidence            66666555554433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.5e-26  Score=250.09  Aligned_cols=106  Identities=27%  Similarity=0.252  Sum_probs=55.7

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      ++++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.++...+..|.++++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            45556666666655555555555555555555555555544455555555555555555555443344555555555555


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccC
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSL  188 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~  188 (775)
                      ++|.+....+..|..+++|++|++++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCC
Confidence            55544444444444444444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=4.1e-26  Score=248.39  Aligned_cols=247  Identities=24%  Similarity=0.261  Sum_probs=138.1

Q ss_pred             CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943           85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN  164 (775)
Q Consensus        85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  164 (775)
                      .+.++.++..++ .+|..+.  +++++|+|++|.+.+..+..|.++++|++|+|++|.+....+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            345666666655 3444333  4566666666666655555566666666666666666555555555555555555555


Q ss_pred             CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccc-cccccC
Q 043943          165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN-HLSGAI  243 (775)
Q Consensus       165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~  243 (775)
                      |.++...+..|..+++|++|++++|.+.                        ...+..|..+++|++|++++| .+....
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIE------------------------SIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCC------------------------EECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCccc------------------------ccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            5555444444555555555555555444                        444444444444444444442 222222


Q ss_pred             CccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCC
Q 043943          244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK  323 (775)
Q Consensus       244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  323 (775)
                      +..|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..++
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  255 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ  255 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred             cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence            234455555555555555554 233 255566666666666666655566666666666666666666655555566666


Q ss_pred             CCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCC
Q 043943          324 CLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS  360 (775)
Q Consensus       324 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  360 (775)
                      +|++|++++|+++...+..+..+++|+.|++++|.+.
T Consensus       256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            6666666666666555555666666666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.7e-26  Score=249.63  Aligned_cols=247  Identities=21%  Similarity=0.206  Sum_probs=150.2

Q ss_pred             CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943           85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN  164 (775)
Q Consensus        85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  164 (775)
                      .+.++.++..++ .+|..+.  ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            455666666665 3444332  4666677776666666666666666666666666666666556666666666666666


Q ss_pred             CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccc-cCccccCccCCCCCCCCEEEcccccccccC
Q 043943          165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNN-SLSGFIPSTLGKLKCLSNLNMSMNHLSGAI  243 (775)
Q Consensus       165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  243 (775)
                      |.++...+..|..+++|++|++++|.+....+..|.++++|+.|++++| .+....+..|..+++|++|++++|.+.+. 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence            6666665556666666666666666666544555666666666666653 33333344556666666666666666532 


Q ss_pred             CccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCC
Q 043943          244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK  323 (775)
Q Consensus       244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  323 (775)
                      | .+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..++
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            2 355566666666666666655555666666666666666666655555666666666666666666655555555566


Q ss_pred             CCCeeeCcCCcCc
Q 043943          324 CLFDLELSMNNLT  336 (775)
Q Consensus       324 ~L~~L~l~~n~l~  336 (775)
                      +|+.|++++|++.
T Consensus       291 ~L~~L~L~~Np~~  303 (452)
T 3zyi_A          291 YLVELHLHHNPWN  303 (452)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             CCCEEEccCCCcC
Confidence            6666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.8e-25  Score=226.06  Aligned_cols=217  Identities=24%  Similarity=0.271  Sum_probs=125.8

Q ss_pred             CCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCC
Q 043943           44 KNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKI  123 (775)
Q Consensus        44 ~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~  123 (775)
                      .++|.|.|+.|...+.++.++++++.+.. +| ..+  .+++++|++++|.+++..+..|..+++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IP-SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCSS-CC-SCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCCc-cC-CCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            47899999999765556667777666653 33 111  145666666666665555555666666666666666665444


Q ss_pred             chhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCC
Q 043943          124 PPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLT  203 (775)
Q Consensus       124 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~  203 (775)
                      +..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++.                        .+..|..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~  133 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL------------------------PPRVFDSLT  133 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC------------------------CTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee------------------------CHHHhCcCc
Confidence            44445556666666666555544444444555555555555544444                        444445555


Q ss_pred             CccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcc
Q 043943          204 NLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLS  283 (775)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  283 (775)
                      +|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus       134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence            55555555555554444445555556666666555555444455566666666666666665444456666677777777


Q ss_pred             cCccc
Q 043943          284 INRLN  288 (775)
Q Consensus       284 ~n~~~  288 (775)
                      +|.+.
T Consensus       214 ~N~~~  218 (270)
T 2o6q_A          214 ENPWD  218 (270)
T ss_dssp             SSCBC
T ss_pred             CCCee
Confidence            76654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=9.2e-28  Score=248.43  Aligned_cols=248  Identities=24%  Similarity=0.228  Sum_probs=143.3

Q ss_pred             cCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCcccc-ccCccccc-------CCCCCCEEEcccCcCcccCCccc
Q 043943          104 SQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLN-GSIPQSLG-------NLSKQSLLSLYNNSLSGYIPPVI  175 (775)
Q Consensus       104 ~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~l  175 (775)
                      ...++|++|++++|.+  .+|..+...  |++|++++|.+. ..+|..+.       ++++|++|++++|.+++.+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3344555555555555  344443322  555555555552 23333333       45555566666555555555544


Q ss_pred             --CCCCCCCEEeccCCcCcccCCcccCCC-----CCccEEEcccccCccccCccCCCCCCCCEEEccccccccc--CCcc
Q 043943          176 --GNLISLSTLDLSLNQLIGSVPFFLGNL-----TNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA--IPSS  246 (775)
Q Consensus       176 --~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~  246 (775)
                        ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..|..+++|++|++++|.+.+.  .+..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              5556666666666665544 4444444     5666666666666665556666666666666666665443  1222


Q ss_pred             c--cCCCCCcEEEcccccCCCC--CC-ccccCCCCCCEEEcccCcccccCC-ccCCCCCCCCeeeccCccccCCCCccCC
Q 043943          247 I--GNVRNLRSLFLYSNELSGS--IP-KEIGNLRSLSNLDLSINRLNGVIP-SSIGNSNNLSILYLYSNQLSGSIPKEIG  320 (775)
Q Consensus       247 l--~~l~~L~~L~l~~n~~~~~--~~-~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~  320 (775)
                      +  ..+++|++|++++|.+++.  ++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence            2  5566666666666666521  11 223456677777777777666553 34455667777777777776 4555554


Q ss_pred             CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCC
Q 043943          321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG  361 (775)
Q Consensus       321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  361 (775)
                        ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence              6777777777777765 44 6777777777777777664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.4e-27  Score=245.87  Aligned_cols=257  Identities=20%  Similarity=0.154  Sum_probs=126.8

Q ss_pred             CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943           85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN  164 (775)
Q Consensus        85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  164 (775)
                      ++..+++.+.+.......+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            3444555555544444444555666666666666665555666666666666666666654333  55666666666666


Q ss_pred             CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCC
Q 043943          165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP  244 (775)
Q Consensus       165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  244 (775)
                      |.+++..     ..++|++|++++|.+.+..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            6554322     224555555555555433322   23445555555555554444444444445555554444444333


Q ss_pred             ccc-cCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCC
Q 043943          245 SSI-GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK  323 (775)
Q Consensus       245 ~~l-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  323 (775)
                      ..+ ..+++|++|++++|.+++. +. ...+++|++|                        ++++|.+++. +..+..++
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L------------------------~Ls~N~l~~l-~~~~~~l~  214 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL------------------------DLSSNKLAFM-GPEFQSAA  214 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE------------------------ECCSSCCCEE-CGGGGGGT
T ss_pred             HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE------------------------ECCCCcCCcc-hhhhcccC
Confidence            333 2344444444444444322 11 1123444444                        4444444422 22244444


Q ss_pred             CCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCC-CCchhhccCCCCCcEEEec
Q 043943          324 CLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS-GSIPQAIGNLVELVSLLLG  379 (775)
Q Consensus       324 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~  379 (775)
                      +|++|++++|+++. +|..+..+++|+.|++++|.+. +.++..+..++.|+.+++.
T Consensus       215 ~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            45555555554442 3344445555555555555554 3444555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1e-29  Score=289.33  Aligned_cols=456  Identities=14%  Similarity=0.116  Sum_probs=259.5

Q ss_pred             CCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCccc---Cc------------ccccCCCC
Q 043943           44 KNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGI---IP------------PQISQLFK  108 (775)
Q Consensus        44 ~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~---~~------------~~~~~l~~  108 (775)
                      ..|++|.++...   ....+++..+..  ..+...+.++++|+.|+++++.....   .|            .....+++
T Consensus        32 ~vck~W~~~~~~---~~~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~  106 (594)
T 2p1m_B           32 LVCKSWYEIERW---CRRKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW  106 (594)
T ss_dssp             TSCHHHHHHHHH---HCCEEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhhhh---hceEEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC
Confidence            345579887322   223445543322  22324566788999999998763211   11            12346789


Q ss_pred             CCEEeCcCCCCCCCCchhcc-CCCCCCEEECCCc-ccccc-CcccccCCCCCCEEEcccCcCcccCCccc----CCCCCC
Q 043943          109 LQYLDLSANKLSGKIPPEIG-QLSFLSELSLYSN-CLNGS-IPQSLGNLSKQSLLSLYNNSLSGYIPPVI----GNLISL  181 (775)
Q Consensus       109 L~~L~ls~n~~~~~~p~~~~-~l~~L~~L~L~~n-~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l----~~l~~L  181 (775)
                      |++|++++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+    ..+++|
T Consensus       107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L  186 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL  186 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred             CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence            99999999988766666664 6889999999988 44432 34444578899999999888776544333    367788


Q ss_pred             CEEeccCCc--Ccc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccc-------cccccCCccccCCC
Q 043943          182 STLDLSLNQ--LIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN-------HLSGAIPSSIGNVR  251 (775)
Q Consensus       182 ~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-------~~~~~~~~~l~~l~  251 (775)
                      ++|++++|.  +.. .++..+..+++|++|++++|...+.++..+..+++|++|++..+       .+.+ ++..+.+++
T Consensus       187 ~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~  265 (594)
T 2p1m_B          187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCK  265 (594)
T ss_dssp             CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCT
T ss_pred             cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCC
Confidence            888888875  211 11112235688888888887432235666777888888885543       2332 233566777


Q ss_pred             CCcEE-EcccccCCCCCCccccCCCCCCEEEcccCcccccCC-ccCCCCCCCCeeeccCccccCC-CCccCCCCCCCCee
Q 043943          252 NLRSL-FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIP-SSIGNSNNLSILYLYSNQLSGS-IPKEIGNLKCLFDL  328 (775)
Q Consensus       252 ~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  328 (775)
                      +|+.| .+..... +.++..+..+++|++|++++|.+++... ..+..+++|++|++.+| ++.. ++.....+++|++|
T Consensus       266 ~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L  343 (594)
T 2p1m_B          266 ELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL  343 (594)
T ss_dssp             TCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred             CcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence            77777 3333222 2344444456777777777777654322 22446677777777766 3211 11122245667777


Q ss_pred             eCcC---------CcCcCccCCcC-CCCCcCcEEEccCCcCCCCchhhcc-CCCCCcEEEeccceecccCCccCcCCCcc
Q 043943          329 ELSM---------NNLTGVIPSSI-GNLRNLRLLYLYRNELSGSIPQAIG-NLVELVSLLLGFNYFRGPIPKNFKNLTNL  397 (775)
Q Consensus       329 ~l~~---------n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  397 (775)
                      ++++         +.+++.....+ ..+++|+.|.+..|.+++.....+. .+++|+.|+++.+...             
T Consensus       344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~-------------  410 (594)
T 2p1m_B          344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK-------------  410 (594)
T ss_dssp             EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT-------------
T ss_pred             EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC-------------
Confidence            6633         22322111111 1245555555555555443333332 3455555555411000             


Q ss_pred             cceeccc-cccccc----cchhhhccCCCCcEEeCCCccceeecCcCcCC-CCCCCEEEcccCcccccCCccc-cCCCCC
Q 043943          398 VRVRMNQ-NNLSGN----ISEAFVGTYPTLSFLDLSHNNFHGQISSDWGR-FPQLGTLDFSVNNITGSIPPEI-GNSSKL  470 (775)
Q Consensus       398 ~~L~l~~-n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~~~~L  470 (775)
                            + +.++..    .....+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|
T Consensus       411 ------~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L  483 (594)
T 2p1m_B          411 ------APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL  483 (594)
T ss_dssp             ------CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred             ------CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence                  0 222210    0111235567777777765 444433333333 6777788887777765444333 567788


Q ss_pred             cEEEccCCCccCcCCh-hhhcCCCCCEEEcCCCcCcccCCcCc-cCCCCCCEEECCCCc
Q 043943          471 QVLNLSSNHIGGKIPM-ELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENR  527 (775)
Q Consensus       471 ~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~ls~n~  527 (775)
                      ++|++++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+.
T Consensus       484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            8888888877544333 33457788888888887754333333 445666666655543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.7e-25  Score=250.00  Aligned_cols=279  Identities=27%  Similarity=0.311  Sum_probs=128.5

Q ss_pred             CCCCCCcccceeeC-------CCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeC
Q 043943           42 TKKNLCAWSGIYCN-------HDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDL  114 (775)
Q Consensus        42 ~~~~~c~w~gv~c~-------~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l  114 (775)
                      .+.++|.|.|..|.       ....++.++++++.+. .+| ..+.  ++|++|++++|.++. +|.   .+++|++|+|
T Consensus        17 ~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp-~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L   88 (622)
T 3g06_A           17 RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLP-DCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEV   88 (622)
T ss_dssp             HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCC-SCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccC-hhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEc
Confidence            35678999775331       1223555666655554 344 2222  455555555555552 332   3455555555


Q ss_pred             cCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCccc
Q 043943          115 SANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS  194 (775)
Q Consensus       115 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  194 (775)
                      ++|.++ .+|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.++.. |..   +++|++|++++|.+++ 
T Consensus        89 s~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~-  155 (622)
T 3g06_A           89 SGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLAS-  155 (622)
T ss_dssp             CSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSC-
T ss_pred             CCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCC-
Confidence            555555 2333   44555555555555552 222   344455555555554432 211   2444445554444432 


Q ss_pred             CCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCC
Q 043943          195 VPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNL  274 (775)
Q Consensus       195 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l  274 (775)
                      +|.   .+++|+.|++++|.+++                         +|   ..+++|+.|++++|.+++ +|.   .+
T Consensus       156 l~~---~~~~L~~L~L~~N~l~~-------------------------l~---~~~~~L~~L~Ls~N~l~~-l~~---~~  200 (622)
T 3g06_A          156 LPA---LPSELCKLWAYNNQLTS-------------------------LP---MLPSGLQELSVSDNQLAS-LPT---LP  200 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCSC-------------------------CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred             cCC---ccCCCCEEECCCCCCCC-------------------------Cc---ccCCCCcEEECCCCCCCC-CCC---cc
Confidence            121   12344444444444443                         22   223444444444444442 222   12


Q ss_pred             CCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEc
Q 043943          275 RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYL  354 (775)
Q Consensus       275 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  354 (775)
                      ++|+.|++++|.++. +|.   .+++|+.|++++|.+++ +|   ..+++|++|++++|+++. +|.   .+++|+.|++
T Consensus       201 ~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~L  268 (622)
T 3g06_A          201 SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSV  268 (622)
T ss_dssp             TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeC
Confidence            444555555554442 221   12445555555554443 22   233445555555555543 222   3345555555


Q ss_pred             cCCcCCCCchhhccCCCCCcEEEeccceecccCCc
Q 043943          355 YRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPK  389 (775)
Q Consensus       355 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  389 (775)
                      ++|.++ .+|..+.++++|+.|++++|.+++..+.
T Consensus       269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            555554 3444455555555555555555444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.9e-27  Score=244.69  Aligned_cols=249  Identities=22%  Similarity=0.223  Sum_probs=207.6

Q ss_pred             cCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCC-CCCCchhcc-------CCCCCCEEECCCccccccCccc
Q 043943           79 FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL-SGKIPPEIG-------QLSFLSELSLYSNCLNGSIPQS  150 (775)
Q Consensus        79 ~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~-~~~~p~~~~-------~l~~L~~L~L~~n~~~~~~~~~  150 (775)
                      +...++|++|++++|.+  .+|..+...  |++|++++|.+ ...+|..+.       ++++|++|++++|.+++.+|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            44567889999999998  667666554  88999999988 345666665       7999999999999999888887


Q ss_pred             c--cCCCCCCEEEcccCcCcccCCcccCCC-----CCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccc--cCc
Q 043943          151 L--GNLSKQSLLSLYNNSLSGYIPPVIGNL-----ISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF--IPS  221 (775)
Q Consensus       151 ~--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~  221 (775)
                      +  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..++.+++|++|++++|.+.+.  .+.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            6  8999999999999999988 7777766     8999999999999988888899999999999999997764  233


Q ss_pred             cC--CCCCCCCEEEcccccccc---cCCccccCCCCCcEEEcccccCCCCCC-ccccCCCCCCEEEcccCcccccCCccC
Q 043943          222 TL--GKLKCLSNLNMSMNHLSG---AIPSSIGNVRNLRSLFLYSNELSGSIP-KEIGNLRSLSNLDLSINRLNGVIPSSI  295 (775)
Q Consensus       222 ~l--~~l~~L~~L~l~~n~~~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l  295 (775)
                      .+  ..+++|++|++++|.+.+   .....+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            34  889999999999999873   222334578999999999999998765 45667899999999999998 666666


Q ss_pred             CCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcC
Q 043943          296 GNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG  337 (775)
Q Consensus       296 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  337 (775)
                      .  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            5  8999999999999976 55 8899999999999999875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=9e-29  Score=281.46  Aligned_cols=110  Identities=17%  Similarity=0.109  Sum_probs=50.9

Q ss_pred             hhcCCCCCEEEcCCCcCcccCCcCccC-CCCCCEEECCCCcccccCCccc-cCcCCCCEEEccCCcCccCCchhHH-hhh
Q 043943          488 LGRLSSLNKLILNKNQLFGSLPPEIGT-LTELELLDLSENRLSNAIPGSL-GNLLKVHYLNLSNNEFSHKIPTQFE-KLQ  564 (775)
Q Consensus       488 l~~l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~  564 (775)
                      +..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+..+. .++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            34455555555544 333322222322 4555555555555544332222 3455556666666555433322222 233


Q ss_pred             ccccEEECcCCcCcccCCccc-cCCCCCcEEeCCCC
Q 043943          565 LQLSELDLSQNFLEGEIPSQI-CNMESLVKLNLSYN  599 (775)
Q Consensus       565 ~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~ls~n  599 (775)
                       +|+.|++++|.++......+ ..++.|+...+..+
T Consensus       507 -~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          507 -TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             -GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             -CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence             56666666665543333333 34555555555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=7.6e-27  Score=242.11  Aligned_cols=264  Identities=22%  Similarity=0.221  Sum_probs=175.1

Q ss_pred             CCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccC
Q 043943          109 LQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSL  188 (775)
Q Consensus       109 L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  188 (775)
                      ++.++++.+.+...+...+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            3444555555543333444555666666666666665555566666666666666666554433  55555555555555


Q ss_pred             CcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCC
Q 043943          189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIP  268 (775)
Q Consensus       189 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  268 (775)
                      |.++                        +..     ..++|++|++++|.+.+..+.   .+++|++|++++|.+++..+
T Consensus        90 n~l~------------------------~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           90 NYVQ------------------------ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             SEEE------------------------EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred             Cccc------------------------ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence            5444                        221     114555555555555443332   23456666666666665555


Q ss_pred             ccccCCCCCCEEEcccCcccccCCccC-CCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCC
Q 043943          269 KEIGNLRSLSNLDLSINRLNGVIPSSI-GNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLR  347 (775)
Q Consensus       269 ~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  347 (775)
                      ..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|++++..+ .+..++
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~  214 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAA  214 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred             hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccC
Confidence            556666667777777776666555544 3567777777777777644 2 23458999999999999997544 488999


Q ss_pred             cCcEEEccCCcCCCCchhhccCCCCCcEEEeccceec-ccCCccCcCCCcccceeccccc-cccc
Q 043943          348 NLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFR-GPIPKNFKNLTNLVRVRMNQNN-LSGN  410 (775)
Q Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-~~~~  410 (775)
                      +|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.++..+..+++|+.+++.++. +.+.
T Consensus       215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence            9999999999998 57788899999999999999998 6778888999999999998543 4443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.2e-25  Score=246.77  Aligned_cols=234  Identities=21%  Similarity=0.216  Sum_probs=164.2

Q ss_pred             CCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEc
Q 043943          372 ELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDF  451 (775)
Q Consensus       372 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  451 (775)
                      +|+.|++++|.+.+..|..|..+++|+.|++++|.+++..+   +..+++|++|++++|.+++..+     .++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            45555555555555444555555555555555555554443   2566677777777777665432     267777777


Q ss_pred             ccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCcc-CCCCCCEEECCCCcccc
Q 043943          452 SVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIG-TLTELELLDLSENRLSN  530 (775)
Q Consensus       452 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~ls~n~l~~  530 (775)
                      ++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            77777765443   356788888888888877777777788888888888888877776665 67888888888888876


Q ss_pred             cCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCc-ccCCccc
Q 043943          531 AIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLS-GFIPNCF  609 (775)
Q Consensus       531 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~-~~~p~~l  609 (775)
                      ..+  ...+++|+.|+|++|.+++..| .+..++ +|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus       184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAA-GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGT-TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCC-CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            633  3357888888888888886544 466776 88888888888884 6777888888888888888887 5667777


Q ss_pred             cCCCCCCEEeCC
Q 043943          610 EDMHGLSSIDIS  621 (775)
Q Consensus       610 ~~l~~L~~l~ls  621 (775)
                      ..++.|+.++++
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            777777766665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=3.5e-24  Score=217.66  Aligned_cols=211  Identities=28%  Similarity=0.284  Sum_probs=189.3

Q ss_pred             CCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEc
Q 043943          420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLIL  499 (775)
Q Consensus       420 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  499 (775)
                      ++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            47899999999998888778999999999999999998877778999999999999999999888888999999999999


Q ss_pred             CCCcCcccCCcCccCCCCCCEEECCCCccccc-CCccccCcCCCCEEEccCCcCccCCchhHHhhhcccc----EEECcC
Q 043943          500 NKNQLFGSLPPEIGTLTELELLDLSENRLSNA-IPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLS----ELDLSQ  574 (775)
Q Consensus       500 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~----~L~Ls~  574 (775)
                      ++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+. +|+    .|++++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l~l~L~ls~  186 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSL  186 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-TCTTCCEEEECCS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-hccccceeeecCC
Confidence            99999877777899999999999999999875 588999999999999999999988888888887 787    899999


Q ss_pred             CcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCC
Q 043943          575 NFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS  632 (775)
Q Consensus       575 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~  632 (775)
                      |.+++..+..+.. .+|+.|++++|++++..+..|..+++|+.|++++|++.|.+|..
T Consensus       187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            9999766665544 48999999999999988888899999999999999999999854

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=8.4e-26  Score=247.85  Aligned_cols=215  Identities=23%  Similarity=0.210  Sum_probs=88.3

Q ss_pred             CCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEecc
Q 043943          108 KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLS  187 (775)
Q Consensus       108 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  187 (775)
                      +|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            44444444444444444444444444444444444443322  4444444444444444332211     1344444444


Q ss_pred             CCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCcccc-CCCCCcEEEcccccCCCC
Q 043943          188 LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG-NVRNLRSLFLYSNELSGS  266 (775)
Q Consensus       188 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~  266 (775)
                      +|.+.+..+.   .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            4444432222   123444444444444444444444444444444444444443333332 344444444444444322


Q ss_pred             CCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCc
Q 043943          267 IPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLT  336 (775)
Q Consensus       267 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  336 (775)
                       | .+..+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus       185 -~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          185 -K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             -E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             -c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence             1 12234444444444444443222 23344444444444444442 2333333444444444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.7e-23  Score=232.22  Aligned_cols=268  Identities=26%  Similarity=0.312  Sum_probs=163.4

Q ss_pred             CCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeecc
Q 043943          228 CLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLY  307 (775)
Q Consensus       228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  307 (775)
                      +++.|++++|.++ .+|..+.  ++|+.|++++|.++ .+|.   .+++|++|++++|.+++ +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            4677777777776 5555544  57777777777776 3444   45677777777777663 332   45666677777


Q ss_pred             CccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccC
Q 043943          308 SNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI  387 (775)
Q Consensus       308 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  387 (775)
                      +|.+++. |.   .+++|+.|++++|+++. +|..   +++|++|++++|.+++. |.   .+.+               
T Consensus       110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~---------------  162 (622)
T 3g06_A          110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSE---------------  162 (622)
T ss_dssp             SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTT---------------
T ss_pred             CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCC---------------
Confidence            6666642 22   44566666666666654 2322   25566666666655431 21   1233               


Q ss_pred             CccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCC
Q 043943          388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS  467 (775)
Q Consensus       388 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  467 (775)
                               |+.|++++|.++.. +    ..+++|+.|++++|.+++. |.   .+++|+.|++++|.++. +|.   .+
T Consensus       163 ---------L~~L~L~~N~l~~l-~----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~  220 (622)
T 3g06_A          163 ---------LCKLWAYNNQLTSL-P----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LP  220 (622)
T ss_dssp             ---------CCEEECCSSCCSCC-C----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CC
T ss_pred             ---------CCEEECCCCCCCCC-c----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CC
Confidence                     44444444444331 1    2345666666666666542 22   23667777777777663 332   24


Q ss_pred             CCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEc
Q 043943          468 SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNL  547 (775)
Q Consensus       468 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L  547 (775)
                      ++|++|++++|.+++ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|+|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            677777777777775 34   34567777777777776 3444   5677777888887777 45667777777888888


Q ss_pred             cCCcCccCCchhHHhhh
Q 043943          548 SNNEFSHKIPTQFEKLQ  564 (775)
Q Consensus       548 s~n~l~~~~~~~~~~l~  564 (775)
                      ++|++++..|..+..+.
T Consensus       292 ~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          292 EGNPLSERTLQALREIT  308 (622)
T ss_dssp             CSCCCCHHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHhcc
Confidence            88877777777666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.6e-23  Score=212.86  Aligned_cols=205  Identities=25%  Similarity=0.244  Sum_probs=129.3

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46777788777777666667777777777777777777666666777777777777777777666666777777777777


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCccc-CCcccCCCCCccEEEcccccCccccCccCCCCCCCC----EEEcccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS-VPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS----NLNMSMN  237 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n  237 (775)
                      ++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+    +|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            77777666665666666777777766666542 355566666666666666666655555555444444    5555555


Q ss_pred             cccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943          238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN  288 (775)
Q Consensus       238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  288 (775)
                      .+.+..+..+. ..+|+.|++++|.+++..+..|..+++|++|++++|.+.
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            55543333322 234555555555555443334455555555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.8e-23  Score=208.98  Aligned_cols=206  Identities=24%  Similarity=0.288  Sum_probs=167.7

Q ss_pred             CCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcC
Q 043943          421 TLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILN  500 (775)
Q Consensus       421 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  500 (775)
                      ..+.++++++.++. +|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            45677777777763 444332  578888888888876666678888888888888888876666666778888888888


Q ss_pred             CCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCccc
Q 043943          501 KNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGE  580 (775)
Q Consensus       501 ~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~  580 (775)
                      +|++.+..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..++ +|+.|++++|.+++.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-SLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc-ccceeEecCCcCcEe
Confidence            8888866666778888888888888888887777788888888888888888876666677777 899999999999877


Q ss_pred             CCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943          581 IPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP  630 (775)
Q Consensus       581 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p  630 (775)
                      .+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+.++
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            77788999999999999999998888889999999999999999988776

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=6.4e-23  Score=207.44  Aligned_cols=208  Identities=25%  Similarity=0.284  Sum_probs=116.1

Q ss_pred             ccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCC
Q 043943          103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLS  182 (775)
Q Consensus       103 ~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  182 (775)
                      +..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            3445556666666655542 22 355566666666666655532  2455555555555555555555555555555666


Q ss_pred             EEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEccccc
Q 043943          183 TLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNE  262 (775)
Q Consensus       183 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  262 (775)
                      +|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            66666665554444445555666666666666555555555556666666666666555444445555666666666666


Q ss_pred             CCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943          263 LSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN  321 (775)
Q Consensus       263 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  321 (775)
                      +++..+..+..+++|++|++++|.+.+.       +++|+.+++..|.++|.+|..++.
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence            6555555555566666666666654422       334555555555555555554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=9.1e-23  Score=206.35  Aligned_cols=213  Identities=25%  Similarity=0.289  Sum_probs=182.1

Q ss_pred             ccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCC
Q 043943           78 SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ  157 (775)
Q Consensus        78 ~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  157 (775)
                      ....+++|+.|++++|.+...  ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..|.++++|
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence            345678899999999988642  357889999999999998885 3 368889999999999999987777778899999


Q ss_pred             CEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccc
Q 043943          158 SLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN  237 (775)
Q Consensus       158 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  237 (775)
                      ++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            99999999999888888899999999999999988777777889999999999999999888888899999999999999


Q ss_pred             cccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCC
Q 043943          238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL  301 (775)
Q Consensus       238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  301 (775)
                      .+.+..+..+..+++|+.|++++|.+.+       .+++|+.|+++.|.++|.+|.+++.+...
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence            9998877778899999999999998764       35678899999999999999888766543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=5.1e-22  Score=202.23  Aligned_cols=203  Identities=27%  Similarity=0.243  Sum_probs=116.9

Q ss_pred             ccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCC
Q 043943           78 SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ  157 (775)
Q Consensus        78 ~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  157 (775)
                      .+.+++++++++++++.++ .+|..+.  +++++|++++|.+.+..+..|..+++|++|++++|.+++..+  ...+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            3456666777777777666 3444332  566777777777766556666677777777777776664322  2556666


Q ss_pred             CEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccc
Q 043943          158 SLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN  237 (775)
Q Consensus       158 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  237 (775)
                      ++|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            66666666655 33445555556666666666555444455555555666666655555555555555555555555555


Q ss_pred             cccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcc
Q 043943          238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRL  287 (775)
Q Consensus       238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  287 (775)
                      ++++..+..+..+++|+.|++++|.++ .+|..+..+.+|+.|++++|.+
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            555443444455555555555555554 4444444455555555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=6.2e-22  Score=201.62  Aligned_cols=203  Identities=27%  Similarity=0.287  Sum_probs=128.4

Q ss_pred             cccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCC
Q 043943          102 QISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL  181 (775)
Q Consensus       102 ~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  181 (775)
                      .+.++++|++++++++.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..+.  ..+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            3667788888888888887 4555443  6788888888888777777788888888888888877765332  566777


Q ss_pred             CEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccc
Q 043943          182 STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSN  261 (775)
Q Consensus       182 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  261 (775)
                      ++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            77777777665 45555666666666666666666655566666666666666666666544444555555666666555


Q ss_pred             cCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccc
Q 043943          262 ELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL  311 (775)
Q Consensus       262 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  311 (775)
                      .+++..+..|..+++|++|++++|+++ .+|..+...++|+.+++.+|.+
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            555443344455555555555555555 3333343444444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1.3e-24  Score=227.99  Aligned_cols=267  Identities=17%  Similarity=0.176  Sum_probs=176.0

Q ss_pred             CCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCC--CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCC
Q 043943           44 KNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSF--PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG  121 (775)
Q Consensus        44 ~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l--~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~  121 (775)
                      ..|.+|.++.|+ ...++.++++++.+..    ..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+
T Consensus        34 ~vc~~W~~~~~~-~~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           34 GVCKRWYRLASD-ESLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             SSCHHHHHHHTC-STTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred             HHHHHHHHHhcC-chhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence            456689999885 4457788888776652    344555  7888888888888766554 5567888888888887765


Q ss_pred             C-CchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccC-cCccc-CCcccCCCCCCCEEeccCC-cCccc-CC
Q 043943          122 K-IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNN-SLSGY-IPPVIGNLISLSTLDLSLN-QLIGS-VP  196 (775)
Q Consensus       122 ~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~  196 (775)
                      . +|..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  187 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ  187 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred             HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence            4 6677788888888888888877777777778888888888887 56543 4555677778888888777 66543 34


Q ss_pred             cccCCCC-CccEEEcccc--cCc-cccCccCCCCCCCCEEEccccc-ccccCCccccCCCCCcEEEccccc-CCCCCCcc
Q 043943          197 FFLGNLT-NLVTLHLFNN--SLS-GFIPSTLGKLKCLSNLNMSMNH-LSGAIPSSIGNVRNLRSLFLYSNE-LSGSIPKE  270 (775)
Q Consensus       197 ~~~~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~  270 (775)
                      ..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  267 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE  267 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred             HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence            5566677 7777777777  343 3344555667777777777776 555555566667777777777663 22221224


Q ss_pred             ccCCCCCCEEEcccCcccccCCccCCCC-CCCCeeeccCccccCCCCccCC
Q 043943          271 IGNLRSLSNLDLSINRLNGVIPSSIGNS-NNLSILYLYSNQLSGSIPKEIG  320 (775)
Q Consensus       271 l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~  320 (775)
                      +..+++|++|++++| ++.   ..+..+ .++..|++++|.+++..|..++
T Consensus       268 l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          268 LGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             GGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             HhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence            556666777777666 221   122222 2355555666666655554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=6.7e-22  Score=197.44  Aligned_cols=142  Identities=25%  Similarity=0.251  Sum_probs=67.6

Q ss_pred             CCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCc
Q 043943           45 NLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP  124 (775)
Q Consensus        45 ~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p  124 (775)
                      +||.|.|+.|..  ....++++++.+. .+| ..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+
T Consensus         3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~-~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE--GKKEVDCQGKSLD-SVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG--GGTEEECTTCCCS-SCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC--CCeEEecCCCCcc-ccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            578999999942  2234555555544 222 1111  345555555555554444445555555555555555554444


Q ss_pred             hhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCc
Q 043943          125 PEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLI  192 (775)
Q Consensus       125 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  192 (775)
                      ..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence            44455555555555555544333334444444444444444444333333333333333333333333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.1e-21  Score=194.45  Aligned_cols=178  Identities=19%  Similarity=0.213  Sum_probs=107.9

Q ss_pred             CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCC-CCCCCchhccCCCCCCEEECCC-ccccccCcccccCCCCCCEEE
Q 043943           84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANK-LSGKIPPEIGQLSFLSELSLYS-NCLNGSIPQSLGNLSKQSLLS  161 (775)
Q Consensus        84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~-~~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~  161 (775)
                      +|++|++++|.+++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.++...+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            77888888888876666677778888888888876 6655555677777777777777 777755556677777777777


Q ss_pred             cccCcCcccCCcccCCCCCCC---EEeccCC-cCcccCCcccCCCCCcc-EEEcccccCccccCccCCCCCCCCEEEccc
Q 043943          162 LYNNSLSGYIPPVIGNLISLS---TLDLSLN-QLIGSVPFFLGNLTNLV-TLHLFNNSLSGFIPSTLGKLKCLSNLNMSM  236 (775)
Q Consensus       162 l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  236 (775)
                      +++|.+++ +|. +..+++|+   +|++++| .+....+..|..+++|+ +|++++|.++.+.+..+.. ++|++|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            77776665 333 55555555   6666655 55544444455555555 5555555555333333333 4555555555


Q ss_pred             cc-ccccCCccccCC-CCCcEEEcccccCC
Q 043943          237 NH-LSGAIPSSIGNV-RNLRSLFLYSNELS  264 (775)
Q Consensus       237 n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~  264 (775)
                      |. +++..+..+..+ ++|+.|++++|.++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            52 443334444444 44444544444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=7.6e-22  Score=203.84  Aligned_cols=201  Identities=22%  Similarity=0.175  Sum_probs=124.7

Q ss_pred             CCCCEEECCCccccccCcccc--cCCCCCCEEEcccCcCcccCC----cccCCCCCCCEEeccCCcCcccCCcccCCCCC
Q 043943          131 SFLSELSLYSNCLNGSIPQSL--GNLSKQSLLSLYNNSLSGYIP----PVIGNLISLSTLDLSLNQLIGSVPFFLGNLTN  204 (775)
Q Consensus       131 ~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  204 (775)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            445555555555555555555  555555666665555554333    23345666666666666666555566666666


Q ss_pred             ccEEEcccccCcc---cc-CccCCCCCCCCEEEcccccccccCCc----cccCCCCCcEEEcccccCCCCCCccccCC--
Q 043943          205 LVTLHLFNNSLSG---FI-PSTLGKLKCLSNLNMSMNHLSGAIPS----SIGNVRNLRSLFLYSNELSGSIPKEIGNL--  274 (775)
Q Consensus       205 L~~L~l~~n~l~~---~~-~~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~l~~l--  274 (775)
                      |++|++++|++.+   .. +..+..+++|++|++++|.++. ++.    .+..+++|++|++++|.+++..|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            6666666666543   11 1223566677777777776652 121    23566777777777777776666666555  


Q ss_pred             -CCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcC
Q 043943          275 -RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG  337 (775)
Q Consensus       275 -~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  337 (775)
                       ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|+++.
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence             57777777777777 4455543  6778888888887754 22 5677888888888887764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2.2e-22  Score=207.89  Aligned_cols=204  Identities=19%  Similarity=0.201  Sum_probs=158.9

Q ss_pred             CCCCcEEeCCCccceeecCcCc--CCCCCCCEEEcccCcccccCC----ccccCCCCCcEEEccCCCccCcCChhhhcCC
Q 043943          419 YPTLSFLDLSHNNFHGQISSDW--GRFPQLGTLDFSVNNITGSIP----PEIGNSSKLQVLNLSSNHIGGKIPMELGRLS  492 (775)
Q Consensus       419 ~~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~  492 (775)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4568888888888888888777  788889999999888887554    3445788899999999988887778888888


Q ss_pred             CCCEEEcCCCcCccc--C--CcCccCCCCCCEEECCCCcccccCC--c-cccCcCCCCEEEccCCcCccCCchhHHhhh-
Q 043943          493 SLNKLILNKNQLFGS--L--PPEIGTLTELELLDLSENRLSNAIP--G-SLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ-  564 (775)
Q Consensus       493 ~L~~L~L~~n~~~~~--~--~~~~~~l~~L~~L~ls~n~l~~~~~--~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-  564 (775)
                      +|++|+|++|++.+.  +  +..+..+++|++|++++|+++...+  . .+..+++|++|+|++|++++.+|..+..+. 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            999999999887542  1  2334678888899999988863321  1 246778889999999988888777776662 


Q ss_pred             -ccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 043943          565 -LQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQG  627 (775)
Q Consensus       565 -~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~  627 (775)
                       ++|+.|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence             38899999999988 6677664  7899999999998875 33 5777888999999998764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=2e-23  Score=220.69  Aligned_cols=257  Identities=19%  Similarity=0.206  Sum_probs=140.3

Q ss_pred             EEEccCCcCCCCchhhccCCCCCcEEEeccceecccCC----ccCcCCC-cccceeccccccccccchhhhccCCCCcEE
Q 043943          351 LLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIP----KNFKNLT-NLVRVRMNQNNLSGNISEAFVGTYPTLSFL  425 (775)
Q Consensus       351 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  425 (775)
                      .++++.|.+++.+|..+...++|+.|++++|.+++..+    ..+..++ +|+.|++++|.+.+..+..+.. +      
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~------   74 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ-I------   74 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH-H------
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH-H------
Confidence            35677777777777766666667777777777765544    3444454 5555555555555443333311 1      


Q ss_pred             eCCCccceeecCcCcCC-CCCCCEEEcccCcccccCCcc----ccCC-CCCcEEEccCCCccCcCChhhh----c-CCCC
Q 043943          426 DLSHNNFHGQISSDWGR-FPQLGTLDFSVNNITGSIPPE----IGNS-SKLQVLNLSSNHIGGKIPMELG----R-LSSL  494 (775)
Q Consensus       426 ~l~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~Ls~n~l~~~~~~~l~----~-l~~L  494 (775)
                                    +.. +++|++|++++|.+++..+..    +..+ ++|++|++++|++++..+..+.    . .++|
T Consensus        75 --------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  140 (362)
T 3goz_A           75 --------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI  140 (362)
T ss_dssp             --------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred             --------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence                          001 145555555555555443332    2333 5566666666665544443332    2 2466


Q ss_pred             CEEEcCCCcCcccCCc----CccCCC-CCCEEECCCCcccccCCccc----cCc-CCCCEEEccCCcCccCC----chhH
Q 043943          495 NKLILNKNQLFGSLPP----EIGTLT-ELELLDLSENRLSNAIPGSL----GNL-LKVHYLNLSNNEFSHKI----PTQF  560 (775)
Q Consensus       495 ~~L~L~~n~~~~~~~~----~~~~l~-~L~~L~ls~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~~~----~~~~  560 (775)
                      ++|+|++|.+++..+.    .+..++ +|++|++++|++++..+..+    ..+ ++|++|+|++|.+++..    +..+
T Consensus       141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l  220 (362)
T 3goz_A          141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF  220 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence            6666666666533222    223333 66666666666655444322    233 46666666666666532    3333


Q ss_pred             HhhhccccEEECcCCcCcccCC----ccccCCCCCcEEeCCCCcCcccC-------CccccCCCCCCEEeCCCCccccc
Q 043943          561 EKLQLQLSELDLSQNFLEGEIP----SQICNMESLVKLNLSYNQLSGFI-------PNCFEDMHGLSSIDISYNRLQGP  628 (775)
Q Consensus       561 ~~l~~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~ls~n~l~~~~-------p~~l~~l~~L~~l~ls~n~l~~~  628 (775)
                      ....++|++|+|++|.+++..+    ..+..+++|+.|++++|.+.+..       +..+..+++|+.||+++|++...
T Consensus       221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            3333367777777777665433    33455677777777777744332       23456667777788888876654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=2.4e-23  Score=218.35  Aligned_cols=222  Identities=19%  Similarity=0.145  Sum_probs=148.3

Q ss_pred             CCCEEECCCCCCcccCcccccCC--CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCcccccc-CcccccCCCCCCEE
Q 043943           84 DLLFLNLFNNELFGIIPPQISQL--FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGS-IPQSLGNLSKQSLL  160 (775)
Q Consensus        84 ~L~~L~ls~~~~~~~~~~~~~~l--~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L  160 (775)
                      .++.++++++.+.   +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4778888888765   4455666  7888888888888766554 55688888888888887654 66677788888888


Q ss_pred             EcccCcCcccCCcccCCCCCCCEEeccCC-cCccc-CCcccCCCCCccEEEcccc-cCccc-cCccCCCCC-CCCEEEcc
Q 043943          161 SLYNNSLSGYIPPVIGNLISLSTLDLSLN-QLIGS-VPFFLGNLTNLVTLHLFNN-SLSGF-IPSTLGKLK-CLSNLNMS  235 (775)
Q Consensus       161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~l~  235 (775)
                      ++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            88888777777777777888888888877 45542 4445666777777777777 66643 355566677 77777777


Q ss_pred             cc--ccc-ccCCccccCCCCCcEEEccccc-CCCCCCccccCCCCCCEEEcccCc-ccccCCccCCCCCCCCeeeccCc
Q 043943          236 MN--HLS-GAIPSSIGNVRNLRSLFLYSNE-LSGSIPKEIGNLRSLSNLDLSINR-LNGVIPSSIGNSNNLSILYLYSN  309 (775)
Q Consensus       236 ~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n  309 (775)
                      +|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            77  333 3344455566677777777666 555555566666666666666663 22221123445555555655555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.7e-21  Score=192.03  Aligned_cols=179  Identities=26%  Similarity=0.317  Sum_probs=116.7

Q ss_pred             CCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCC
Q 043943          446 LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSE  525 (775)
Q Consensus       446 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~  525 (775)
                      .++++++++.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|++|+|++|.+++..+..+..+++|++|++++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            344445544444 2333322  3566666666666655555566666666666666666655555566666666666666


Q ss_pred             CcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccC
Q 043943          526 NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFI  605 (775)
Q Consensus       526 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~  605 (775)
                      |.+++..+..|..+++|++|+|++|++++..+..+..+. +|+.|+|++|++++..+..|..+++|+.|++++|++++..
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            666665556666666666666666666655554555555 6777777777777666667777788888888888888777


Q ss_pred             CccccCCCCCCEEeCCCCccccc
Q 043943          606 PNCFEDMHGLSSIDISYNRLQGP  628 (775)
Q Consensus       606 p~~l~~l~~L~~l~ls~n~l~~~  628 (775)
                      +..+..+++|+.|++++|++.+.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            77777788888888888888775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.8e-21  Score=192.86  Aligned_cols=197  Identities=19%  Similarity=0.171  Sum_probs=147.9

Q ss_pred             CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCcc-ccccCcccccCCCCCCEEEccc-CcCcccCCcccCCCCCCCEE
Q 043943          107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNC-LNGSIPQSLGNLSKQSLLSLYN-NSLSGYIPPVIGNLISLSTL  184 (775)
Q Consensus       107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L  184 (775)
                      ++|++|++++|.+++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            389999999999997777789999999999999997 8766667889999999999998 88888877888888889999


Q ss_pred             eccCCcCcccCCcccCCCCCcc---EEEcccc-cCccccCccCCCCCCCC-EEEcccccccccCCccccCCCCCcEEEcc
Q 043943          185 DLSLNQLIGSVPFFLGNLTNLV---TLHLFNN-SLSGFIPSTLGKLKCLS-NLNMSMNHLSGAIPSSIGNVRNLRSLFLY  259 (775)
Q Consensus       185 ~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  259 (775)
                      ++++|.+++ +|. +..+++|+   +|++++| .+++..+..|..+++|+ +|++++|.++...+..+.. ++|+.|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            888888875 554 77777777   8888888 77777667777788888 8888887777333333333 677777777


Q ss_pred             ccc-CCCCCCccccCC-CCCCEEEcccCcccccCCccCCCCCCCCeeeccCc
Q 043943          260 SNE-LSGSIPKEIGNL-RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSN  309 (775)
Q Consensus       260 ~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  309 (775)
                      +|. +++..+..|..+ ++|++|++++|++++..+.   .+++|+.|++.++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            773 665555566666 7777777777776643322   3455666665543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=4.1e-23  Score=218.30  Aligned_cols=223  Identities=20%  Similarity=0.185  Sum_probs=101.4

Q ss_pred             EECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCc----hhccCCC-CCCEEECCCccccccCcccccCC-----CCC
Q 043943           88 LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP----PEIGQLS-FLSELSLYSNCLNGSIPQSLGNL-----SKQ  157 (775)
Q Consensus        88 L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~~L  157 (775)
                      ++++.|.+++.+|..+...++|++|++++|.+.+..+    ..|..++ +|++|+|++|.+.+..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3455555555555444444445555555555554443    4444555 55555555555554444444332     555


Q ss_pred             CEEEcccCcCcccCCcc----cCCC-CCCCEEeccCCcCcccCCccc----CC-CCCccEEEcccccCcccc----CccC
Q 043943          158 SLLSLYNNSLSGYIPPV----IGNL-ISLSTLDLSLNQLIGSVPFFL----GN-LTNLVTLHLFNNSLSGFI----PSTL  223 (775)
Q Consensus       158 ~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~----~~~l  223 (775)
                      ++|++++|.+++..+..    +..+ ++|++|++++|.+.+..+..+    .. .++|++|++++|.++...    +..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            55555555554443332    2222 455555555555543333222    22 235555555555554321    1222


Q ss_pred             CCCC-CCCEEEcccccccccCCccc----cCC-CCCcEEEcccccCCCC----CCccccC-CCCCCEEEcccCcccccCC
Q 043943          224 GKLK-CLSNLNMSMNHLSGAIPSSI----GNV-RNLRSLFLYSNELSGS----IPKEIGN-LRSLSNLDLSINRLNGVIP  292 (775)
Q Consensus       224 ~~l~-~L~~L~l~~n~~~~~~~~~l----~~l-~~L~~L~l~~n~~~~~----~~~~l~~-l~~L~~L~l~~n~~~~~~~  292 (775)
                      ..++ +|++|++++|.+++..+..+    ..+ ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            2333 55555555555544333222    222 3555555555555432    2222322 2355555555555543322


Q ss_pred             ----ccCCCCCCCCeeeccCcc
Q 043943          293 ----SSIGNSNNLSILYLYSNQ  310 (775)
Q Consensus       293 ----~~l~~l~~L~~L~l~~n~  310 (775)
                          ..+..+++|+.|++++|.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHhcCCCccEEEeccCC
Confidence                122334444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=4.1e-23  Score=220.76  Aligned_cols=188  Identities=21%  Similarity=0.318  Sum_probs=125.7

Q ss_pred             CCCCCCCEEEcccCcccc----cCCccccCCCCCcEEEccCCCccCcCChhh----hcC---------CCCCEEEcCCCc
Q 043943          441 GRFPQLGTLDFSVNNITG----SIPPEIGNSSKLQVLNLSSNHIGGKIPMEL----GRL---------SSLNKLILNKNQ  503 (775)
Q Consensus       441 ~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~  503 (775)
                      ..+++|++|++++|.+++    .+|..+..+++|++|+|++|.+.+..+..+    ..+         ++|++|++++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            456667777777766665    355566677777777777777654333333    233         677777777777


Q ss_pred             Cc-ccCC---cCccCCCCCCEEECCCCcccc-----cCCccccCcCCCCEEEccCCcCc----cCCchhHHhhhccccEE
Q 043943          504 LF-GSLP---PEIGTLTELELLDLSENRLSN-----AIPGSLGNLLKVHYLNLSNNEFS----HKIPTQFEKLQLQLSEL  570 (775)
Q Consensus       504 ~~-~~~~---~~~~~l~~L~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~~L~~L  570 (775)
                      ++ +.++   ..+..+++|++|++++|.++.     ..+..+..+++|+.|+|++|.++    ..+|..+..++ +|+.|
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L  249 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLREL  249 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEE
Confidence            75 2333   345566777777777777762     23336667777777777777775    45566666666 78888


Q ss_pred             ECcCCcCccc----CCcccc--CCCCCcEEeCCCCcCcc----cCCccc-cCCCCCCEEeCCCCcccccC
Q 043943          571 DLSQNFLEGE----IPSQIC--NMESLVKLNLSYNQLSG----FIPNCF-EDMHGLSSIDISYNRLQGPV  629 (775)
Q Consensus       571 ~Ls~n~l~~~----~p~~l~--~l~~L~~L~ls~n~l~~----~~p~~l-~~l~~L~~l~ls~n~l~~~~  629 (775)
                      +|++|.+++.    ++..+.  .+++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            8888877755    455663  37888888888888887    466666 55788888888888776544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.4e-23  Score=222.54  Aligned_cols=137  Identities=20%  Similarity=0.284  Sum_probs=63.3

Q ss_pred             CCCcEEeCCCccce-eecC---cCcCCCCCCCEEEcccCcccc-----cCCccccCCCCCcEEEccCCCcc----CcCCh
Q 043943          420 PTLSFLDLSHNNFH-GQIS---SDWGRFPQLGTLDFSVNNITG-----SIPPEIGNSSKLQVLNLSSNHIG----GKIPM  486 (775)
Q Consensus       420 ~~L~~L~l~~n~l~-~~~~---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~Ls~n~l~----~~~~~  486 (775)
                      ++|++|++++|++. ..++   ..+..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    ..+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            45555555555543 1111   223344455555555554441     12224445555555555555553    33444


Q ss_pred             hhhcCCCCCEEEcCCCcCccc----CCcCc--cCCCCCCEEECCCCcccc----cCCccc-cCcCCCCEEEccCCcCccC
Q 043943          487 ELGRLSSLNKLILNKNQLFGS----LPPEI--GTLTELELLDLSENRLSN----AIPGSL-GNLLKVHYLNLSNNEFSHK  555 (775)
Q Consensus       487 ~l~~l~~L~~L~L~~n~~~~~----~~~~~--~~l~~L~~L~ls~n~l~~----~~~~~~-~~l~~L~~L~Ls~n~l~~~  555 (775)
                      .+..+++|++|+|++|++++.    ++..+  ..+++|+.|+|++|.+++    .+|..+ .++++|++|+|++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            445555555555555555433    22333  224555555555555554    233333 3345555555555555544


Q ss_pred             C
Q 043943          556 I  556 (775)
Q Consensus       556 ~  556 (775)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            4

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=6.2e-21  Score=196.35  Aligned_cols=193  Identities=26%  Similarity=0.371  Sum_probs=104.0

Q ss_pred             CCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCE
Q 043943           80 SSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSL  159 (775)
Q Consensus        80 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  159 (775)
                      ..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++. + .+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCE
Confidence            345666777777776653 23 466667777777777766643 32 66667777777777766532 2 4666666666


Q ss_pred             EEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccc
Q 043943          160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL  239 (775)
Q Consensus       160 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  239 (775)
                      |++++|.+++..  .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+
T Consensus       112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            666666665432  25555666666666655553322  4455555555555555553322  44555555555555554


Q ss_pred             cccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943          240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN  288 (775)
Q Consensus       240 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  288 (775)
                      .+..+  +..+++|++|++++|.+++..  .+..+++|++|++++|.++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            43221  444444444444444444322  1444444444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=9.1e-21  Score=195.10  Aligned_cols=206  Identities=27%  Similarity=0.342  Sum_probs=124.9

Q ss_pred             ECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCc
Q 043943           89 NLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS  168 (775)
Q Consensus        89 ~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  168 (775)
                      .+..+.+++.+  .+..+++|++|++++|.+.. +| .+..+++|++|++++|.+.+..+  +..+++|++|++++|.++
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (308)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence            34444444322  24467788888888887773 44 57778888888888888774433  777777777777777776


Q ss_pred             ccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCcccc
Q 043943          169 GYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG  248 (775)
Q Consensus       169 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~  248 (775)
                      +.  ..+..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  +.
T Consensus        99 ~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~  170 (308)
T 1h6u_A           99 NV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA  170 (308)
T ss_dssp             CC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             Cc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc
Confidence            54  3566677777777777766643 22 5666666666666666664432  5566666666666666553222  55


Q ss_pred             CCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcccc
Q 043943          249 NVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS  312 (775)
Q Consensus       249 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  312 (775)
                      .+++|+.|++++|.+++..+  +..+++|++|++++|.+++..  .+..+++|+.|++++|.++
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            55666666666665553322  455555555555555555433  2445555555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.4e-20  Score=182.02  Aligned_cols=156  Identities=24%  Similarity=0.243  Sum_probs=97.3

Q ss_pred             CCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCC
Q 043943           44 KNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKI  123 (775)
Q Consensus        44 ~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~  123 (775)
                      ...|.|.++.|...+           +. .+|   ..-.++|++|++++|.+++..+..|..+++|++|++++|.+.+..
T Consensus         4 ~C~C~~~~v~c~~~~-----------l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~   68 (208)
T 2o6s_A            4 RCSCSGTTVECYSQG-----------RT-SVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP   68 (208)
T ss_dssp             TCEEETTEEECCSSC-----------CS-SCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCEECCCEEEecCCC-----------cc-CCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence            345899999996422           11 122   122357788888888877666666777777888888777777555


Q ss_pred             chhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCC
Q 043943          124 PPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLT  203 (775)
Q Consensus       124 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~  203 (775)
                      +..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus        69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  148 (208)
T 2o6s_A           69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  148 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence            55567777777777777777755555566666666666666666655555555555555555555555544443444455


Q ss_pred             CccEEEccccc
Q 043943          204 NLVTLHLFNNS  214 (775)
Q Consensus       204 ~L~~L~l~~n~  214 (775)
                      +|++|++++|.
T Consensus       149 ~L~~L~l~~N~  159 (208)
T 2o6s_A          149 SLQYIWLHDNP  159 (208)
T ss_dssp             TCCEEECCSCC
T ss_pred             CccEEEecCCC
Confidence            55555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=8.6e-20  Score=191.72  Aligned_cols=188  Identities=18%  Similarity=0.086  Sum_probs=92.6

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCc-hhccCCCCCCE-EECCCccccccCcccccCCCCCCEE
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP-PEIGQLSFLSE-LSLYSNCLNGSIPQSLGNLSKQSLL  160 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p-~~~~~l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~~L  160 (775)
                      +++++|+|++|+++.+.+.+|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+.+|+++...|..|.++++|++ 
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~-  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY-  108 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE-
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc-
Confidence            356666666666654444455556666666666655543333 23455555443 333444444444444444444444 


Q ss_pred             EcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEccc-ccCccccCccCCCCC-CCCEEEccccc
Q 043943          161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFN-NSLSGFIPSTLGKLK-CLSNLNMSMNH  238 (775)
Q Consensus       161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~  238 (775)
                                             |++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.
T Consensus       109 -----------------------L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X          109 -----------------------LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             -----------------------EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             -----------------------ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence                                   44444444433333333444455555543 234444444444443 45556666666


Q ss_pred             ccccCCccccCCCCCcEEEccc-ccCCCCCCccccCCCCCCEEEcccCcccccCCccC
Q 043943          239 LSGAIPSSIGNVRNLRSLFLYS-NELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSI  295 (775)
Q Consensus       239 ~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l  295 (775)
                      ++.. +.......+|++|++.+ |.++...+..|..+++|++|++++|+++...+..+
T Consensus       166 i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          166 IQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             CCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred             ccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence            6532 33333344566666653 44443323345666666666666666664433333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.8e-19  Score=174.19  Aligned_cols=181  Identities=24%  Similarity=0.287  Sum_probs=125.8

Q ss_pred             CEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccC
Q 043943           86 LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNN  165 (775)
Q Consensus        86 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n  165 (775)
                      +.++.+++.++. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            456667766653 34333  457888888888888666666778888888888888887665566777788888888888


Q ss_pred             cCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCc
Q 043943          166 SLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPS  245 (775)
Q Consensus       166 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  245 (775)
                      .+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.     
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence            777666666777777777777777777655555677777777777777777666666677777777777777554     


Q ss_pred             cccCCCCCcEEEcccccCCCCCCccccCCCC
Q 043943          246 SIGNVRNLRSLFLYSNELSGSIPKEIGNLRS  276 (775)
Q Consensus       246 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  276 (775)
                        ..+++|+.|++..|.++|.+|..++.++.
T Consensus       162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          162 --CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             --CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             --cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence              23445666666666666666666554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=7.2e-19  Score=184.70  Aligned_cols=199  Identities=18%  Similarity=0.132  Sum_probs=95.8

Q ss_pred             CEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCC-cccCCCCCCCE-Eecc
Q 043943          110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIP-PVIGNLISLST-LDLS  187 (775)
Q Consensus       110 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~-L~l~  187 (775)
                      ++++.+++.++ .+|..+  .+++++|+|++|+++.+.+.+|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            34445555554 344433  2355555555555553333445555555555555555543322 34455555443 3334


Q ss_pred             CCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccc-ccccccCCccccCCC-CCcEEEcccccCCC
Q 043943          188 LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM-NHLSGAIPSSIGNVR-NLRSLFLYSNELSG  265 (775)
Q Consensus       188 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~  265 (775)
                      .|+++...|..|..+++|++|++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            4555555555566666666666666666555444454555555555543 334433333343332 34555555555542


Q ss_pred             CCCccccCCCCCCEEEccc-CcccccCCccCCCCCCCCeeeccCcccc
Q 043943          266 SIPKEIGNLRSLSNLDLSI-NRLNGVIPSSIGNSNNLSILYLYSNQLS  312 (775)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~  312 (775)
                       ++.......+|++|++.+ |.++...+..|..+++|++|++++|+++
T Consensus       169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence             222222334455555542 3333333334444445555555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=2.5e-19  Score=197.60  Aligned_cols=203  Identities=26%  Similarity=0.317  Sum_probs=117.7

Q ss_pred             CCCCC-----cccce-eeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcC
Q 043943           43 KKNLC-----AWSGI-YCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSA  116 (775)
Q Consensus        43 ~~~~c-----~w~gv-~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~  116 (775)
                      +.++|     .|.|+ .|. .++++.++++++.+.+ +| ..+  +++|++|+|++|.++ .+|   ..+++|++|++++
T Consensus        39 ~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp-~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~  109 (571)
T 3cvr_A           39 QALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LP-DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACD  109 (571)
T ss_dssp             TCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CC-SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCS
T ss_pred             cCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cC-HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccC
Confidence            34566     69998 563 3466667777666655 44 222  255666666666665 344   3355666666666


Q ss_pred             CCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCC
Q 043943          117 NKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP  196 (775)
Q Consensus       117 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  196 (775)
                      |.+++ +|. +..  +|++|++++|.+++ +|.   .+++|++|++++|.+++                         +|
T Consensus       110 N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-------------------------lp  156 (571)
T 3cvr_A          110 NRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-------------------------LP  156 (571)
T ss_dssp             SCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-------------------------CC
T ss_pred             CCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-------------------------CC
Confidence            66554 444 433  56666666665553 333   34445555555544443                         22


Q ss_pred             cccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCC-------cEEEcccccCCCCCCc
Q 043943          197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL-------RSLFLYSNELSGSIPK  269 (775)
Q Consensus       197 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~  269 (775)
                      .   .+++|++|++++|.+++ +|. |.  ++|++|++++|.++ .+|. +..  +|       +.|++++|.++ .+|.
T Consensus       157 ~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~  224 (571)
T 3cvr_A          157 E---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE  224 (571)
T ss_dssp             C---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred             C---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence            2   33455555555555554 233 33  55666666666555 3444 332  44       88888888887 5677


Q ss_pred             cccCCCCCCEEEcccCcccccCCccCCCCC
Q 043943          270 EIGNLRSLSNLDLSINRLNGVIPSSIGNSN  299 (775)
Q Consensus       270 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~  299 (775)
                      .+..+++|+.|++++|.+++..|..+..+.
T Consensus       225 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          225 NILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             GGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             HHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            777788888888888888887777665543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=168.92  Aligned_cols=158  Identities=20%  Similarity=0.291  Sum_probs=123.6

Q ss_pred             cEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCC-cCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccC
Q 043943          471 QVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLP-PEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSN  549 (775)
Q Consensus       471 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~  549 (775)
                      +.+++++|.++. +|..+  .+.+++|+|++|++++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            356666666653 34433  2345677777777765543 3467777888888888888777777788888888888888


Q ss_pred             CcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 043943          550 NEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPV  629 (775)
Q Consensus       550 n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~  629 (775)
                      |++++..+..+..+. +|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.|.+
T Consensus        91 N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           91 NRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            888877777777777 8888888888888888888999999999999999999988999999999999999999999888


Q ss_pred             CCC
Q 043943          630 PFS  632 (775)
Q Consensus       630 p~~  632 (775)
                      +..
T Consensus       170 ~l~  172 (220)
T 2v70_A          170 YLA  172 (220)
T ss_dssp             GGH
T ss_pred             chH
Confidence            754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2.1e-18  Score=167.72  Aligned_cols=157  Identities=20%  Similarity=0.293  Sum_probs=111.1

Q ss_pred             cEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCC
Q 043943          471 QVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN  550 (775)
Q Consensus       471 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  550 (775)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            34555555554 2333332  46666666666666555556666677777777777776666667777777777777777


Q ss_pred             cCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943          551 EFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP  630 (775)
Q Consensus       551 ~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p  630 (775)
                      +++...+..+..++ +|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++.+.++
T Consensus        91 ~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           91 KITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             cCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            77654444455666 77778888888877777888888888888888888888888888888889999999998887665


Q ss_pred             C
Q 043943          631 F  631 (775)
Q Consensus       631 ~  631 (775)
                      .
T Consensus       170 l  170 (220)
T 2v9t_B          170 L  170 (220)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=3.9e-18  Score=188.07  Aligned_cols=187  Identities=26%  Similarity=0.318  Sum_probs=140.0

Q ss_pred             CCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEecc
Q 043943          108 KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLS  187 (775)
Q Consensus       108 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  187 (775)
                      +|++|++++|.+++ +|..+  .++|++|+|++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56666666666654 44433  255666666666666 444   345666777777776665 344 444  78888888


Q ss_pred             CCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCC
Q 043943          188 LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI  267 (775)
Q Consensus       188 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  267 (775)
                      +|.+++ +|.   .+++|+.|++++|.++++ |.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            888876 554   578999999999999874 44   57899999999999996 666 65  89999999999998 66


Q ss_pred             CccccCCCCC-------CEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCC
Q 043943          268 PKEIGNLRSL-------SNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL  322 (775)
Q Consensus       268 ~~~l~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  322 (775)
                      |. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            66 554  77       99999999999 567778789999999999999998888776554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=6.5e-18  Score=165.51  Aligned_cols=158  Identities=23%  Similarity=0.246  Sum_probs=94.9

Q ss_pred             CCCCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCC
Q 043943           42 TKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG  121 (775)
Q Consensus        42 ~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~  121 (775)
                      .+.+.|.|.++.|...+           + ..+| .  .-.++|++|+|++|.+++..+..|..+++|++|+|++|.+..
T Consensus        14 ~~~~~Cs~~~v~c~~~~-----------l-~~ip-~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~   78 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSKR-----------H-ASVP-A--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA   78 (229)
T ss_dssp             CTTCEEETTEEECTTSC-----------C-SSCC-S--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEEeCCEeEccCCC-----------c-CccC-C--CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence            46788999999996321           1 2233 1  112677777777777777667777777777777777777765


Q ss_pred             CCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCC
Q 043943          122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGN  201 (775)
Q Consensus       122 ~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  201 (775)
                      ..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..
T Consensus        79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  157 (229)
T 3e6j_A           79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR  157 (229)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence            55555667777777777777776555555566666666666666555 33444455555555555555544333334444


Q ss_pred             CCCccEEEcccccC
Q 043943          202 LTNLVTLHLFNNSL  215 (775)
Q Consensus       202 l~~L~~L~l~~n~l  215 (775)
                      +++|+.|++++|.+
T Consensus       158 l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          158 LSSLTHAYLFGNPW  171 (229)
T ss_dssp             CTTCCEEECTTSCB
T ss_pred             CCCCCEEEeeCCCc
Confidence            44444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=3.6e-18  Score=190.70  Aligned_cols=190  Identities=23%  Similarity=0.310  Sum_probs=111.4

Q ss_pred             CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943           85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN  164 (775)
Q Consensus        85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  164 (775)
                      +..+.+..+.+.+..+  +..+++|++|++++|.+.. +| .+..+++|++|+|++|.+.+..|  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            3444455555443322  4456666666666666653 33 36666666666666666664433  66666666666666


Q ss_pred             CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCC
Q 043943          165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP  244 (775)
Q Consensus       165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  244 (775)
                      |.+.+.  ..+..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|
T Consensus        97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            666542  2456666666666666666532  2355666666666666666644  455666666666666666654443


Q ss_pred             ccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccccc
Q 043943          245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV  290 (775)
Q Consensus       245 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  290 (775)
                        +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+.
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence              55666666666666666542  2356666666666666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=1.4e-18  Score=183.10  Aligned_cols=160  Identities=26%  Similarity=0.248  Sum_probs=84.9

Q ss_pred             CcEEEccCCCccCcCChhhh-cCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEcc
Q 043943          470 LQVLNLSSNHIGGKIPMELG-RLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLS  548 (775)
Q Consensus       470 L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls  548 (775)
                      ++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44444444444444333343 44444444444444444444444445555555555555544444445555555555555


Q ss_pred             CCcCccCCchhHHhhhccccEEECcCCcCcccCCccc---cCCCCCcEEeCCCCcCcccCCccccCCCC--CCEEeCCCC
Q 043943          549 NNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI---CNMESLVKLNLSYNQLSGFIPNCFEDMHG--LSSIDISYN  623 (775)
Q Consensus       549 ~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~ls~n~l~~~~p~~l~~l~~--L~~l~ls~n  623 (775)
                      +|++++..|..|..+. +|+.|+|++|++++..+..|   ..+++|+.|+|++|++++..+..+..++.  ++.|++++|
T Consensus       121 ~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             SSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCcccEECHHHhCCcc-cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            5555544444454444 55555555555553333333   45667777777777777665566666655  367777777


Q ss_pred             cccccCC
Q 043943          624 RLQGPVP  630 (775)
Q Consensus       624 ~l~~~~p  630 (775)
                      ++.|.+.
T Consensus       200 ~~~C~C~  206 (361)
T 2xot_A          200 PLECDCK  206 (361)
T ss_dssp             CEECCHH
T ss_pred             CccCCcC
Confidence            7776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.6e-18  Score=175.02  Aligned_cols=170  Identities=25%  Similarity=0.340  Sum_probs=78.3

Q ss_pred             CCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEE
Q 043943          105 QLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTL  184 (775)
Q Consensus       105 ~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  184 (775)
                      .+++|++|++++|.+... + .+..+++|++|++++|.+++..+  +.++++|++|++++|.+++.  ..+..+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            444555555555544422 2 24445555555555555543222  44445555555554444432  124444555555


Q ss_pred             eccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCC
Q 043943          185 DLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS  264 (775)
Q Consensus       185 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  264 (775)
                      ++++|.+.+.  ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            5555544432  2244445555555555554433  334444555555555554443322  444445555555555444


Q ss_pred             CCCCccccCCCCCCEEEcccCccc
Q 043943          265 GSIPKEIGNLRSLSNLDLSINRLN  288 (775)
Q Consensus       265 ~~~~~~l~~l~~L~~L~l~~n~~~  288 (775)
                      + ++ .+..+++|+.|++++|.++
T Consensus       192 ~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          192 D-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             C-Ch-hhccCCCCCEEECcCCccc
Confidence            2 22 2444555555555555444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=7e-18  Score=165.32  Aligned_cols=137  Identities=26%  Similarity=0.327  Sum_probs=84.0

Q ss_pred             CCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEE
Q 043943          492 SSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELD  571 (775)
Q Consensus       492 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~  571 (775)
                      ++|++|+|++|++++..|..+..+++|++|+|++|.+....+..|..+++|+.|+|++|++++..+..+..++ +|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV-HLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch-hhCeEe
Confidence            4455555555555544444455555555555555555444444455555555555555555544444444554 666666


Q ss_pred             CcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943          572 LSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP  630 (775)
Q Consensus       572 Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p  630 (775)
                      |++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.|.++
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            6666666 566666777777777777777777666677777788888888888877665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.6e-18  Score=174.98  Aligned_cols=173  Identities=31%  Similarity=0.350  Sum_probs=142.7

Q ss_pred             cCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCC
Q 043943           79 FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS  158 (775)
Q Consensus        79 ~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  158 (775)
                      +..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            45677889999999888754 3 47888999999999998885443  8889999999999998875 33 488899999


Q ss_pred             EEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccc
Q 043943          159 LLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH  238 (775)
Q Consensus       159 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  238 (775)
                      +|++++|.+.+.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            999999988875  5678889999999999988764  467888999999999999887654  8889999999999999


Q ss_pred             ccccCCccccCCCCCcEEEcccccCCC
Q 043943          239 LSGAIPSSIGNVRNLRSLFLYSNELSG  265 (775)
Q Consensus       239 ~~~~~~~~l~~l~~L~~L~l~~n~~~~  265 (775)
                      +++. + .+..+++|+.|++++|.++.
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCC-h-hhccCCCCCEEECcCCcccC
Confidence            8853 3 48889999999999998874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.6e-17  Score=161.53  Aligned_cols=132  Identities=27%  Similarity=0.256  Sum_probs=69.2

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      +++++|++++|.+++..+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.++...+..|.++++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            45666666666666555555666666666666666666555555666666666666666655433333445555555555


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEccccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNS  214 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  214 (775)
                      ++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            5555544444444444444444444444443333333333444444444333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=162.75  Aligned_cols=154  Identities=22%  Similarity=0.218  Sum_probs=102.8

Q ss_pred             EEEcccCcccccCCccccCCCCCcEEEccCCCccCcCC-hhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCC
Q 043943          448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSEN  526 (775)
Q Consensus       448 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n  526 (775)
                      .+++++|.++. +|..+  ...+++|++++|++++..+ ..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            45555555542 33332  2244566666666665533 33566666667777666666655556667777777777777


Q ss_pred             cccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccC
Q 043943          527 RLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFI  605 (775)
Q Consensus       527 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~  605 (775)
                      .+++..+..|..+++|++|+|++|++++..|..+..+. +|+.|+|++|++++..|..|..+++|+.|++++|.+.+..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            77666666677777777777777777766666666666 7777777777777777788888888888888888877653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=7e-18  Score=188.36  Aligned_cols=192  Identities=23%  Similarity=0.334  Sum_probs=142.8

Q ss_pred             CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEec
Q 043943          107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDL  186 (775)
Q Consensus       107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  186 (775)
                      ..+..+.+..+.+....+  +..+++|++|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+  +..+++|++|+|
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            345556677776664433  5678899999999998874 34 58889999999999998887655  788888888888


Q ss_pred             cCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCC
Q 043943          187 SLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGS  266 (775)
Q Consensus       187 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  266 (775)
                      ++|.+.+ ++ .+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+++.
T Consensus        95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            8888774 33 577888888888888887754  4577778888888888877754  5577777788888887777765


Q ss_pred             CCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCC
Q 043943          267 IPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGS  314 (775)
Q Consensus       267 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  314 (775)
                      .|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+.
T Consensus       169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            55  77777777777777777654  3466777777777777777643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=2.5e-19  Score=205.49  Aligned_cols=201  Identities=21%  Similarity=0.196  Sum_probs=76.5

Q ss_pred             CCCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCC
Q 043943            6 SSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDL   85 (775)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L   85 (775)
                      .+.+..++++|+++..+........-..|.     ......+.|.+..+.. .+++.++|..+.+... +      ...+
T Consensus       127 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~------~~~l  193 (727)
T 4b8c_D          127 KSLVDCTKQALMEMADTLTDSKTAKKQQPT-----GDSTPSGTATNSAVST-PLTPKIELFANGKDEA-N------QALL  193 (727)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred             hhccccchhhhhhhhhhcccccCcccCCCc-----CCCCccccCCCceecC-CccceEEeeCCCCCcc-h------hhHh
Confidence            344567788999999887542222233454     2344567898887754 6788888887776542 2      1233


Q ss_pred             CEEECCCCCCcc---------cCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCC
Q 043943           86 LFLNLFNNELFG---------IIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSK  156 (775)
Q Consensus        86 ~~L~ls~~~~~~---------~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~  156 (775)
                      +.++|+.+.+.+         ..+..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++
T Consensus       194 ~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  271 (727)
T 4b8c_D          194 QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN  271 (727)
T ss_dssp             ----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred             hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence            444455444432         23445555666666666666655 44444555666666666666655 55555555555


Q ss_pred             CCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccC
Q 043943          157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTL  223 (775)
Q Consensus       157 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  223 (775)
                      |++|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..|+.+++|++|+|++|.+++.+|..+
T Consensus       272 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          272 LRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            555555555555 33555555555555555555544 344445555555555555555554444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2.4e-17  Score=173.72  Aligned_cols=128  Identities=26%  Similarity=0.286  Sum_probs=70.5

Q ss_pred             CEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCccccc-CCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccC
Q 043943          110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLG-NLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSL  188 (775)
Q Consensus       110 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  188 (775)
                      ++++++++.+. .+|..+.  +.+++|+|++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            46677777666 3454432  3466677777666655555554 566666666666666555555555555555555555


Q ss_pred             CcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943          189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS  240 (775)
Q Consensus       189 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  240 (775)
                      |.++...+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            5555444444455555555555555555444444444444444444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=2.8e-18  Score=178.64  Aligned_cols=286  Identities=14%  Similarity=0.070  Sum_probs=181.0

Q ss_pred             CCCCCCEEECCCCCCcccCcccccC-CCCCCEEeCcCCCCC--CCCchhccCCCCCCEEECCCccccccCcccccC----
Q 043943           81 SFPDLLFLNLFNNELFGIIPPQISQ-LFKLQYLDLSANKLS--GKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGN----  153 (775)
Q Consensus        81 ~l~~L~~L~ls~~~~~~~~~~~~~~-l~~L~~L~ls~n~~~--~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~----  153 (775)
                      .+.+++.|.++++ +.......+.. +++|++|||++|.+.  ...+.   .++.++.+.+..+.+   .+..|.+    
T Consensus        23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~   95 (329)
T 3sb4_A           23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNG   95 (329)
T ss_dssp             HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETT
T ss_pred             hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccc
Confidence            3557788888764 22121223333 788899999888876  22221   222245555555533   2355666    


Q ss_pred             ----CCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEccccc----CccccCccCCC
Q 043943          154 ----LSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNS----LSGFIPSTLGK  225 (775)
Q Consensus       154 ----l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~l~~  225 (775)
                          +++|+.|++.+ .++.+...+|.+|++|+.|+++.|.+....+.+|..+.++..+.+..+.    ...+...+|.+
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                88888888888 7887888888888888888888888776777788887777777766532    22334455666


Q ss_pred             CCCCC-EEEccccc-ccccCCccccCCCCCcEEEcccccCCCCCCccc-cCCCCCCEEEcccCcccccCCccCCCCCCCC
Q 043943          226 LKCLS-NLNMSMNH-LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNSNNLS  302 (775)
Q Consensus       226 l~~L~-~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  302 (775)
                      +..|+ .+.+.... +.......-....+++.+.+.++-.. .....+ ..+++|+++++++|.++.+.+.+|.++++|+
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            77776 44443321 11111111112345566665544211 111111 1367777777777777766667777777777


Q ss_pred             eeeccCccccCCCCccCCCCCCCC-eeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEE
Q 043943          303 ILYLYSNQLSGSIPKEIGNLKCLF-DLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLL  377 (775)
Q Consensus       303 ~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  377 (775)
                      .+++.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.++++.|.+....+..|.++++|+.+.
T Consensus       254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            7777776 6656666777777787 777777 66666667777888888888877777766666777787777764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.2e-17  Score=156.71  Aligned_cols=151  Identities=18%  Similarity=0.269  Sum_probs=78.1

Q ss_pred             CCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEc
Q 043943          468 SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNL  547 (775)
Q Consensus       468 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L  547 (775)
                      ++|++|++++|.+. .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            34444444444444 222 3444444444444444332  1123444555555555555555444455555555555555


Q ss_pred             cCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 043943          548 SNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ  626 (775)
Q Consensus       548 s~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~  626 (775)
                      ++|.+++..|..+..++ +|++|++++|...+.+| .+..+++|+.|++++|++++..  .+..+++|+.|++++|++.
T Consensus       120 s~n~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSBCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             cCCccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            55555555555555555 56666666665222333 4666666666666666666532  5666667777777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.3e-17  Score=156.54  Aligned_cols=151  Identities=19%  Similarity=0.300  Sum_probs=68.8

Q ss_pred             CCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943          106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD  185 (775)
Q Consensus       106 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  185 (775)
                      +++|++|++++|.+. .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            334444444444444 222 34444444444444443321  12344444444444444444444444444444555555


Q ss_pred             ccCCcCcccCCcccCCCCCccEEEccccc-CccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCC
Q 043943          186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNS-LSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS  264 (775)
Q Consensus       186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  264 (775)
                      +++|.+++..+..+..+++|++|++++|. +.. ++ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            55554444444444455555555555554 332 22 34555555555555555543 22 4555566666666665543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=2.8e-17  Score=156.11  Aligned_cols=133  Identities=24%  Similarity=0.349  Sum_probs=79.2

Q ss_pred             CEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCc-cccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECc
Q 043943          495 NKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPG-SLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLS  573 (775)
Q Consensus       495 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls  573 (775)
                      +.+++++|.++ .+|..+.  .+|++|++++|.+++..+. .+..+++|++|+|++|++++..|..+..+. +|+.|+|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECC
Confidence            34444444443 3333322  2455555555555544432 355555566666666665555555555555 66666666


Q ss_pred             CCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 043943          574 QNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF  631 (775)
Q Consensus       574 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~  631 (775)
                      +|++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++.|.++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            6666666666666677777777777777777677777777777777777777766654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=2.2e-15  Score=159.80  Aligned_cols=266  Identities=11%  Similarity=0.050  Sum_probs=171.0

Q ss_pred             CCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEE
Q 043943          105 QLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTL  184 (775)
Q Consensus       105 ~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  184 (775)
                      .+..++.+.+..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+...+|.+|++|+.+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            3456666666543 333445556654 5777776655 554555566663 577776664 5555666667777777777


Q ss_pred             eccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCC
Q 043943          185 DLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS  264 (775)
Q Consensus       185 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  264 (775)
                      +++.|.++......|. +.+|+.+.+.. .+..+...+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence            7776666644444554 46777777763 355566667777777777777654 44455555655 567777773 3454


Q ss_pred             CCCCccccCCCCCCEEEcccCccc-----ccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCcc
Q 043943          265 GSIPKEIGNLRSLSNLDLSINRLN-----GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVI  339 (775)
Q Consensus       265 ~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  339 (775)
                      .....+|.+|++|+.+++.++.+.     ...+..|.++++|+.+.+.+ .++.+...+|.++++|+.+.+..+ ++.+.
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            455566777777777777766554     35556777777888887773 455555667777888888888544 55556


Q ss_pred             CCcCCCCCcCcEEEccCCcCCCCchhhccCCC-CCcEEEecccee
Q 043943          340 PSSIGNLRNLRLLYLYRNELSGSIPQAIGNLV-ELVSLLLGFNYF  383 (775)
Q Consensus       340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l  383 (775)
                      ..+|.++ +|+.+++.+|.........|.+++ .++.+.+..+.+
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            6677777 888888888776655556666664 677777766544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=1e-17  Score=174.30  Aligned_cols=285  Identities=13%  Similarity=0.022  Sum_probs=211.3

Q ss_pred             CCCCCCEEeCcCCCCCCCCchhccC-CCCCCEEECCCcccc--ccCcccccCCCCCCEEEcccCcCcccCCcccCC----
Q 043943          105 QLFKLQYLDLSANKLSGKIPPEIGQ-LSFLSELSLYSNCLN--GSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGN----  177 (775)
Q Consensus       105 ~l~~L~~L~ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~----  177 (775)
                      .+.+|+.|+++++- .......+.. +++|++|||++|++.  ...+..+   +.++.+.+..+.   +...+|.+    
T Consensus        23 ~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~   95 (329)
T 3sb4_A           23 EANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNG   95 (329)
T ss_dssp             HHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETT
T ss_pred             hhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccc
Confidence            35678999998762 2111223444 889999999999987  2222222   224555555553   34566777    


Q ss_pred             ----CCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccc----ccccCCccccC
Q 043943          178 ----LISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH----LSGAIPSSIGN  249 (775)
Q Consensus       178 ----l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~----~~~~~~~~l~~  249 (775)
                          |++|+.|++.. .++.+.+.+|.+|++|+.+++.+|.+..+.+.+|.++.++..+.+....    ........|.+
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                99999999999 7887778889999999999999999998989999998888888776532    22233455667


Q ss_pred             CCCCc-EEEcccccCCCCCCccc----cCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCC
Q 043943          250 VRNLR-SLFLYSNELSGSIPKEI----GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKC  324 (775)
Q Consensus       250 l~~L~-~L~l~~n~~~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  324 (775)
                      +..|+ .+.+....   .++..+    ....+++.+.+.++-...........+++|+.+++.+|+++.+.+.+|.++++
T Consensus       175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~  251 (329)
T 3sb4_A          175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY  251 (329)
T ss_dssp             SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred             ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence            77777 55554321   222211    23566778887765322111111123789999999999999887888999999


Q ss_pred             CCeeeCcCCcCcCccCCcCCCCCcCc-EEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceec
Q 043943          325 LFDLELSMNNLTGVIPSSIGNLRNLR-LLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRM  402 (775)
Q Consensus       325 L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  402 (775)
                      |++|++.+| +..+.+.+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++..|.+....+..|.++++|+.++.
T Consensus       252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999998 7777788999999999 999998 677666789999999999999999999888889999999998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=1.6e-17  Score=190.51  Aligned_cols=193  Identities=23%  Similarity=0.258  Sum_probs=128.4

Q ss_pred             eCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCc
Q 043943          426 DLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF  505 (775)
Q Consensus       426 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~  505 (775)
                      +++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            34444444 45677888999999999999998 67777779999999999999999 78888999999999999999999


Q ss_pred             ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccc
Q 043943          506 GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI  585 (775)
Q Consensus       506 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l  585 (775)
                       .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+......+..++|++|.+++.+|.. 
T Consensus       284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-  360 (727)
T 4b8c_D          284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-  360 (727)
T ss_dssp             -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence             78999999999999999999997 567789999999999999999999999888776534556889999999988865 


Q ss_pred             cCCCCCcEEeCCCC--------cCcccCCccccCCCCCCEEeCCCCcccccC
Q 043943          586 CNMESLVKLNLSYN--------QLSGFIPNCFEDMHGLSSIDISYNRLQGPV  629 (775)
Q Consensus       586 ~~l~~L~~L~ls~n--------~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~  629 (775)
                           |+.|++++|        .+.+..+..+.++..+....+++|-+.+..
T Consensus       361 -----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~  407 (727)
T 4b8c_D          361 -----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY  407 (727)
T ss_dssp             ----------------------------------------------CCCGGG
T ss_pred             -----cceeEeecccccccccCCccccccchhhcccccceeeeecccccccc
Confidence                 455666666        444445555666777788888999876433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.7e-17  Score=166.15  Aligned_cols=167  Identities=24%  Similarity=0.278  Sum_probs=78.3

Q ss_pred             CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943           84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY  163 (775)
Q Consensus        84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  163 (775)
                      +++.++++++.+++..  .+..+++|++|++++|.+. .+| .+..+++|++|++++|.+++..+  +.++++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3444445555544321  3445555555555555554 233 35555555555555555553322  4455555555555


Q ss_pred             cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccC
Q 043943          164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI  243 (775)
Q Consensus       164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  243 (775)
                      +|.+++..+  +                        .. ++|+.|++++|.+++.  ..+..+++|++|++++|.+++. 
T Consensus        94 ~N~l~~l~~--~------------------------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-  143 (263)
T 1xeu_A           94 RNRLKNLNG--I------------------------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-  143 (263)
T ss_dssp             SSCCSCCTT--C------------------------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred             CCccCCcCc--c------------------------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence            554443211  1                        11 3444444444444432  2344444455555555444432 


Q ss_pred             CccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccc
Q 043943          244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG  289 (775)
Q Consensus       244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  289 (775)
                      + .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.++.
T Consensus       144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            1 344455555555555555433  334555555555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=3.2e-15  Score=158.55  Aligned_cols=265  Identities=12%  Similarity=0.089  Sum_probs=156.5

Q ss_pred             CCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEE
Q 043943          129 QLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTL  208 (775)
Q Consensus       129 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  208 (775)
                      .+..++.+.+..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+....+.+|.+|++|+.+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            3456666666553 444445566654 5666666554 555555666664 566666664 3444455566666677777


Q ss_pred             EcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943          209 HLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN  288 (775)
Q Consensus       209 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  288 (775)
                      ++..|.++.+...+|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+.++
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCcc
Confidence            7766666655555555 466677666633 55455556666666777766653 33344445555 56666666 33455


Q ss_pred             ccCCccCCCCCCCCeeeccCcccc-----CCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCc
Q 043943          289 GVIPSSIGNSNNLSILYLYSNQLS-----GSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSI  363 (775)
Q Consensus       289 ~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  363 (775)
                      .....+|.++++|+.+.+.++.+.     ......|.+|++|+.+.+. +.++.+...+|.+|++|+.+.+..+ ++...
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            455566666667777666665543     2344556666677776666 3355555566666667777766443 44344


Q ss_pred             hhhccCCCCCcEEEeccceecccCCccCcCCC-cccceeccccc
Q 043943          364 PQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT-NLVRVRMNQNN  406 (775)
Q Consensus       364 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~  406 (775)
                      ..+|.++ +|+.+.+.+|.+.......|.+++ +++.+++..+.
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            4566666 677777666666555555555553 55666665544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=3.4e-17  Score=163.96  Aligned_cols=170  Identities=22%  Similarity=0.274  Sum_probs=122.0

Q ss_pred             CCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943          106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD  185 (775)
Q Consensus       106 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  185 (775)
                      +.+++.++++.+.+++. + .+..+++|++|++++|.++. ++                         .+..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-------------------------~l~~l~~L~~L~   69 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-------------------------GMQFFTNLKELH   69 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-------------------------TGGGCTTCCEEE
T ss_pred             HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-------------------------HHhhCCCCCEEE
Confidence            34445555555555522 2 34555555555555555542 22                         344455566666


Q ss_pred             ccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCC
Q 043943          186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG  265 (775)
Q Consensus       186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  265 (775)
                      +++|.+++..+  +..+++|++|++++|.+++.. . +.. ++|++|++++|.+++.  ..+..+++|+.|++++|.+++
T Consensus        70 L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~-~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           70 LSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN-G-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             CCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCT-T-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCChh--hccCCCCCEEECCCCccCCcC-c-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence            66665554333  667777777777777777542 2 333 8999999999999864  358999999999999999986


Q ss_pred             CCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCC
Q 043943          266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGS  314 (775)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  314 (775)
                      . + .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.
T Consensus       143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            4 4 688999999999999999976  6789999999999999999865

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.67  E-value=3.4e-15  Score=159.35  Aligned_cols=334  Identities=10%  Similarity=-0.031  Sum_probs=150.6

Q ss_pred             cccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccC
Q 043943          144 NGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTL  223 (775)
Q Consensus       144 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  223 (775)
                      +.+...+|.+|++|+.+.+.. .++.+...+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +..+...+|
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             eEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence            334445556666666665542 344444555555555555555433 33233334444444444433321 222333333


Q ss_pred             CCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCe
Q 043943          224 GKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSI  303 (775)
Q Consensus       224 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  303 (775)
                      .+                        +..++.......  ......+|.+|++|+.+.+.++. .......|.++.+|+.
T Consensus       137 ~~------------------------~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~  189 (394)
T 4fs7_A          137 KG------------------------CDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKS  189 (394)
T ss_dssp             TT------------------------CCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCB
T ss_pred             ec------------------------ccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceE
Confidence            33                        322222211111  11222345555555555554332 2233445555555555


Q ss_pred             eeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEecccee
Q 043943          304 LYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYF  383 (775)
Q Consensus       304 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  383 (775)
                      +.+..+ ++......|.++..|+.+.+..+...  +.........|+.+.+.... +......+..+..++.+.+..+..
T Consensus       190 i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~  265 (394)
T 4fs7_A          190 IKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL  265 (394)
T ss_dssp             CCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC
T ss_pred             EEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc
Confidence            555443 22233344555555555555443322  11222233455555554321 111223344444444444433321


Q ss_pred             cccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCcc
Q 043943          384 RGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE  463 (775)
Q Consensus       384 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  463 (775)
                      . .....|..                         +..++.+......   .....|..+.+|+.+.+.++ ++.....+
T Consensus       266 ~-i~~~~F~~-------------------------~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~a  315 (394)
T 4fs7_A          266 R-IGGSLFYN-------------------------CSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEA  315 (394)
T ss_dssp             E-ECSCTTTT-------------------------CTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred             e-eecccccc-------------------------ccccceeccCcee---eccccccccccccccccccc-cceechhh
Confidence            1 11222333                         3333333333221   12234455555555555433 33333445


Q ss_pred             ccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCC
Q 043943          464 IGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVH  543 (775)
Q Consensus       464 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  543 (775)
                      |.+|.+|+.+++.++ ++.....+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++..+ +. .+..+|.++++|+
T Consensus       316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~  391 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK  391 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred             hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence            666666666666533 44344555666666666666554 44344556666777777766544 22 2234566666665


Q ss_pred             EE
Q 043943          544 YL  545 (775)
Q Consensus       544 ~L  545 (775)
                      .+
T Consensus       392 ~I  393 (394)
T 4fs7_A          392 WI  393 (394)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.67  E-value=3.6e-15  Score=159.22  Aligned_cols=290  Identities=10%  Similarity=0.005  Sum_probs=146.6

Q ss_pred             cCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccC
Q 043943           74 LDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGN  153 (775)
Q Consensus        74 ~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~  153 (775)
                      +...+|.++++|+.+.|..+ ++.+-..+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|.+
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            34456777777777777643 55555667777777777777654 44344556777777777666554 33344455555


Q ss_pred             CCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEE
Q 043943          154 LSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN  233 (775)
Q Consensus       154 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  233 (775)
                      +..++.....  ....+...+|.+|++|+.+.+..+. .......|.++.+|+.+++..+ ++.+...+|.++..|+.+.
T Consensus       139 ~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          139 CDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             CCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             ccccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence            5433322221  2223334556666666666665442 2234445666666666666543 4444455566666666665


Q ss_pred             cccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccC
Q 043943          234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG  313 (775)
Q Consensus       234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  313 (775)
                      +..+...  +.........|+.+.+... ++......+..+..|+.+.+..+... .....|..+..++.+......+. 
T Consensus       215 ~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-  289 (394)
T 4fs7_A          215 FPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-  289 (394)
T ss_dssp             CCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-
T ss_pred             cCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-
Confidence            5544321  1222233445555555432 22223334555566666655544322 33444555555555554443321 


Q ss_pred             CCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEec
Q 043943          314 SIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLG  379 (775)
Q Consensus       314 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  379 (775)
                        ...|..+.+|+.+.+.++ ++.+...+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+.
T Consensus       290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred             --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence              123445555555555432 33333444555555555555322 222223344444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=1.1e-18  Score=193.75  Aligned_cols=201  Identities=21%  Similarity=0.181  Sum_probs=94.1

Q ss_pred             CCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccc
Q 043943          320 GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVR  399 (775)
Q Consensus       320 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  399 (775)
                      ..++.|+.|++++|++. .+|..++.+++|+.|++++|......+..+           ..+...+..|..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence            44556666666666665 445555666666666654432100001000           011123334444555555555


Q ss_pred             ee-ccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCC
Q 043943          400 VR-MNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN  478 (775)
Q Consensus       400 L~-l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n  478 (775)
                      |+ ++.|.+.            .|..+.+++|.+....+      ..|+.|++++|.+++ +|. +..+++|+.|+|++|
T Consensus       414 L~~l~~n~~~------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N  473 (567)
T 1dce_A          414 VDPMRAAYLD------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN  473 (567)
T ss_dssp             HCGGGHHHHH------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred             Ccchhhcccc------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence            55 3333221            22223333343332211      124555555555553 333 555555555555555


Q ss_pred             CccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccC-CccccCcCCCCEEEccCCcCccC
Q 043943          479 HIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAI-PGSLGNLLKVHYLNLSNNEFSHK  555 (775)
Q Consensus       479 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~  555 (775)
                      .++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|++|.+++.. |..+..+++|+.|+|++|++++.
T Consensus       474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            555 445555555555555555555553 33 4555555555555555555444 45555555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=1.6e-18  Score=192.49  Aligned_cols=217  Identities=19%  Similarity=0.178  Sum_probs=170.3

Q ss_pred             CCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcE
Q 043943          296 GNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVS  375 (775)
Q Consensus       296 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  375 (775)
                      ..+++|+.|++++|.++ .+|..++.+++|++|++++|......+..           +..+...+..|..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence            56889999999999998 67999999999999999776432111110           1122334567777888888888


Q ss_pred             EE-eccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccC
Q 043943          376 LL-LGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVN  454 (775)
Q Consensus       376 L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  454 (775)
                      |+ ++.|.+           ..|..+.+.+|.+....+       ..|+.|++++|.+++ +|. +..+++|+.|++++|
T Consensus       414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N  473 (567)
T 1dce_A          414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN  473 (567)
T ss_dssp             HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred             Ccchhhccc-----------chhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence            87 555543           356677777776654221       258999999999987 455 899999999999999


Q ss_pred             cccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccC-CcCccCCCCCCEEECCCCcccccCC
Q 043943          455 NITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSL-PPEIGTLTELELLDLSENRLSNAIP  533 (775)
Q Consensus       455 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~  533 (775)
                      .++ .+|..+..+++|++|+|++|++++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++.+|
T Consensus       474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            999 788899999999999999999997 56 7999999999999999999876 8999999999999999999997755


Q ss_pred             cc---ccCcCCCCEEEc
Q 043943          534 GS---LGNLLKVHYLNL  547 (775)
Q Consensus       534 ~~---~~~l~~L~~L~L  547 (775)
                      ..   +..+++|+.|++
T Consensus       551 ~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          551 IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTHHHHHCTTCSEEEC
T ss_pred             HHHHHHHHCcccCccCC
Confidence            32   233667777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=3.5e-15  Score=141.57  Aligned_cols=132  Identities=23%  Similarity=0.302  Sum_probs=101.9

Q ss_pred             cEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCc-cccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCC
Q 043943          423 SFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPP-EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNK  501 (775)
Q Consensus       423 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  501 (775)
                      +.++++++.+. .+|..+.  +++++|++++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56777777764 3444332  3788888888888766554 477888888888888888877788888888888888888


Q ss_pred             CcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCc
Q 043943          502 NQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIP  557 (775)
Q Consensus       502 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  557 (775)
                      |++++..+..+..+++|++|++++|++++..|..+..+++|++|+|++|++.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88887777778888888888888888888888888888888888888888876554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=2.7e-15  Score=136.16  Aligned_cols=128  Identities=26%  Similarity=0.310  Sum_probs=98.4

Q ss_pred             CCCCEEEcCCCcCc-ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEE
Q 043943          492 SSLNKLILNKNQLF-GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSEL  570 (775)
Q Consensus       492 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L  570 (775)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..++ +|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCEE
Confidence            56677777777776 56666667777777777777777755  5677788888888888888877777777777 88888


Q ss_pred             ECcCCcCccc-CCccccCCCCCcEEeCCCCcCcccCC---ccccCCCCCCEEeCCC
Q 043943          571 DLSQNFLEGE-IPSQICNMESLVKLNLSYNQLSGFIP---NCFEDMHGLSSIDISY  622 (775)
Q Consensus       571 ~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l~ls~  622 (775)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888888763 34778888889999999998888766   5788888888888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.1e-15  Score=140.02  Aligned_cols=133  Identities=21%  Similarity=0.176  Sum_probs=82.9

Q ss_pred             CCCCCEEECCCCCCc-ccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943           82 FPDLLFLNLFNNELF-GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL  160 (775)
Q Consensus        82 l~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  160 (775)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356777777777776 55666667777777777777776644  556677777777777777765566656666666666


Q ss_pred             EcccCcCcccC-CcccCCCCCCCEEeccCCcCcccCC---cccCCCCCccEEEcccccCc
Q 043943          161 SLYNNSLSGYI-PPVIGNLISLSTLDLSLNQLIGSVP---FFLGNLTNLVTLHLFNNSLS  216 (775)
Q Consensus       161 ~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~  216 (775)
                      ++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            66666666542 2455556666666666665553333   24455555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=4.2e-15  Score=138.00  Aligned_cols=133  Identities=24%  Similarity=0.276  Sum_probs=95.3

Q ss_pred             CCCCEEEcCCCcCc-ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEE
Q 043943          492 SSLNKLILNKNQLF-GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSEL  570 (775)
Q Consensus       492 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L  570 (775)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..++ +|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCEE
Confidence            55666666666665 45565566666677777777766654  5566777777777777777766666666676 78888


Q ss_pred             ECcCCcCcccC-CccccCCCCCcEEeCCCCcCcccCC---ccccCCCCCCEEeCCCCcccc
Q 043943          571 DLSQNFLEGEI-PSQICNMESLVKLNLSYNQLSGFIP---NCFEDMHGLSSIDISYNRLQG  627 (775)
Q Consensus       571 ~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l~ls~n~l~~  627 (775)
                      ++++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            88888877532 2677888888888888888887665   577888888888888887653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=7.1e-15  Score=139.36  Aligned_cols=131  Identities=28%  Similarity=0.324  Sum_probs=86.1

Q ss_pred             EEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCC
Q 043943          496 KLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQN  575 (775)
Q Consensus       496 ~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n  575 (775)
                      .+++++|.++ .+|..+  .++|++|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|..+. +|+.|+|++|
T Consensus        14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSS
T ss_pred             EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECCCC
Confidence            3444444444 333322  134555555555555 3345555566666666666666655555555555 6677777777


Q ss_pred             cCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 043943          576 FLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF  631 (775)
Q Consensus       576 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~  631 (775)
                      ++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++.|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence            77766677788888888888888888877777788888888899998888876653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.2e-15  Score=136.70  Aligned_cols=128  Identities=20%  Similarity=0.181  Sum_probs=81.3

Q ss_pred             CCCCCEEECCCCCCc-ccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943           82 FPDLLFLNLFNNELF-GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL  160 (775)
Q Consensus        82 l~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  160 (775)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            356777777777776 56666667777777777777777644  556777777777777777765566666666667777


Q ss_pred             EcccCcCccc-CCcccCCCCCCCEEeccCCcCcccCC---cccCCCCCccEEEcc
Q 043943          161 SLYNNSLSGY-IPPVIGNLISLSTLDLSLNQLIGSVP---FFLGNLTNLVTLHLF  211 (775)
Q Consensus       161 ~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~  211 (775)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7666666653 23455556666666666665554333   244555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.3e-14  Score=136.01  Aligned_cols=114  Identities=25%  Similarity=0.321  Sum_probs=73.2

Q ss_pred             CCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEe
Q 043943          516 TELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLN  595 (775)
Q Consensus       516 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  595 (775)
                      ++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+. +|+.|++++|++++..+..|..+++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            3455555555555544444455555555555555555544444445555 666666666666655556667777778888


Q ss_pred             CCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943          596 LSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP  630 (775)
Q Consensus       596 ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p  630 (775)
                      +++|.+++..+..+..+++|+.|++++|++.|.+|
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88887777666667777888888888888877666

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=3.2e-14  Score=133.21  Aligned_cols=135  Identities=24%  Similarity=0.211  Sum_probs=95.0

Q ss_pred             CCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCc
Q 043943           45 NLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP  124 (775)
Q Consensus        45 ~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p  124 (775)
                      ..|.|.++.|...           ++. .+|   ....++|++|++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus         5 C~C~~~~l~~~~~-----------~l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~   69 (177)
T 2o6r_A            5 CSCSGTEIRCNSK-----------GLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD   69 (177)
T ss_dssp             CEEETTEEECCSS-----------CCS-SCC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             CEeCCCEEEecCC-----------CCc-cCC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence            4578988888532           221 122   1223678888888888876666667788888888888888876666


Q ss_pred             hhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCccc
Q 043943          125 PEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS  194 (775)
Q Consensus       125 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  194 (775)
                      ..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus        70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            6677888888888888888766666667777777777777777766665666677777777777766543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=5.7e-14  Score=133.09  Aligned_cols=124  Identities=24%  Similarity=0.262  Sum_probs=59.4

Q ss_pred             CEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccC
Q 043943           86 LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNN  165 (775)
Q Consensus        86 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n  165 (775)
                      ++++++++.++ .+|..+.  ++|++|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            35566666655 3343332  35555566555555 34455555555555555555555444444555555555555555


Q ss_pred             cCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccc
Q 043943          166 SLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNN  213 (775)
Q Consensus       166 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  213 (775)
                      .+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            444444444444444444444444444332223333333333333333

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.51  E-value=2.1e-12  Score=137.78  Aligned_cols=159  Identities=11%  Similarity=0.114  Sum_probs=100.1

Q ss_pred             cCccccCCCC-CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCC---CCCCCchhccCCCCCCEEECCCccccccCcc
Q 043943           74 LDEFSFSSFP-DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANK---LSGKIPPEIGQLSFLSELSLYSNCLNGSIPQ  149 (775)
Q Consensus        74 ~~~~~~~~l~-~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~---~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~  149 (775)
                      +.+.+|.++. .|+.+.+..+ ++.+-..+|.+|.+|+.+.+..+.   ++.+...+|..+.+|+.+.+..+ ++.+...
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~  131 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE  131 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence            3445676664 4788887654 555666778888888888877653   44445566777777777777654 4435556


Q ss_pred             cccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCC
Q 043943          150 SLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL  229 (775)
Q Consensus       150 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  229 (775)
                      .|.++.+|+.+.+.. .+..+....|..+.+|+.+.+..+ ++.....+|.. .+|+.+.+..+ +..+...+|.++..+
T Consensus       132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l  207 (394)
T 4gt6_A          132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFAL  207 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTC
T ss_pred             hhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhcccc
Confidence            677777777777753 344455666777777777777654 33333444433 56777776543 233455667777777


Q ss_pred             CEEEccccc
Q 043943          230 SNLNMSMNH  238 (775)
Q Consensus       230 ~~L~l~~n~  238 (775)
                      .........
T Consensus       208 ~~~~~~~~~  216 (394)
T 4gt6_A          208 STITSDSES  216 (394)
T ss_dssp             CEEEECCSS
T ss_pred             ceecccccc
Confidence            766655443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.49  E-value=3.9e-12  Score=135.61  Aligned_cols=110  Identities=13%  Similarity=0.197  Sum_probs=54.4

Q ss_pred             CcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCC
Q 043943          437 SSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLT  516 (775)
Q Consensus       437 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~  516 (775)
                      ...|.++++|+.+.+. +.++.....+|.+|.+|+.++|.++ ++.....+|.+|.+|+.+.|..+ ++.....+|.+|+
T Consensus       281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            3445555555555554 2333333445666666666666543 44344455666666666666543 4434445666666


Q ss_pred             CCCEEECCCCcccccCCccccCcCCCCEEEccCCcC
Q 043943          517 ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF  552 (775)
Q Consensus       517 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  552 (775)
                      +|+.+++.++....   ..+..+.+|+.+.+..|.+
T Consensus       358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            66666666654331   2455566666666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=8.6e-14  Score=130.04  Aligned_cols=106  Identities=20%  Similarity=0.273  Sum_probs=59.1

Q ss_pred             CCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCc--cccCCCCCcEE
Q 043943          517 ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPS--QICNMESLVKL  594 (775)
Q Consensus       517 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L  594 (775)
                      +|++|++++|.+++.  ..+..+++|++|+|++|.+++..+..+..++ +|+.|++++|.++ .+|.  .+..+++|+.|
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-DLTELILTNNSLV-ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT-TCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC-CCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence            444444444444433  3344455555555555555543333334444 5666666666554 3443  56667777777


Q ss_pred             eCCCCcCcccCCc----cccCCCCCCEEeCCCCcccc
Q 043943          595 NLSYNQLSGFIPN----CFEDMHGLSSIDISYNRLQG  627 (775)
Q Consensus       595 ~ls~n~l~~~~p~----~l~~l~~L~~l~ls~n~l~~  627 (775)
                      ++++|.++.. |.    .+..+++|+.||+++|....
T Consensus       119 ~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          119 CILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             ECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence            7777777643 33    36677777777777776543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.1e-13  Score=129.24  Aligned_cols=135  Identities=18%  Similarity=0.171  Sum_probs=91.5

Q ss_pred             cccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCC
Q 043943          463 EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKV  542 (775)
Q Consensus       463 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  542 (775)
                      .+..+.+|++|++++|.+... +......++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            355666777777777776633 43222233777777777777654  466777777777777777776655555777777


Q ss_pred             CEEEccCCcCccCCch--hHHhhhccccEEECcCCcCcccCCc----cccCCCCCcEEeCCCCcCcc
Q 043943          543 HYLNLSNNEFSHKIPT--QFEKLQLQLSELDLSQNFLEGEIPS----QICNMESLVKLNLSYNQLSG  603 (775)
Q Consensus       543 ~~L~Ls~n~l~~~~~~--~~~~l~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~ls~n~l~~  603 (775)
                      ++|+|++|.++ .+|.  .+..++ +|+.|++++|.++ .+|.    .+..+++|+.||+++|....
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~-~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLK-SLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCT-TCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCC-CCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            77777777774 3444  566666 7888888888777 4455    37778888888888887654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=9.3e-16  Score=146.60  Aligned_cols=151  Identities=20%  Similarity=0.236  Sum_probs=109.3

Q ss_pred             CCCcEEEccCCCccCcCCh------hhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCC
Q 043943          468 SKLQVLNLSSNHIGGKIPM------ELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLK  541 (775)
Q Consensus       468 ~~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~  541 (775)
                      ..++.++++.+.+.+..|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            3444444444444444443      67777777778887777775 55 6777788888888888877 45666667788


Q ss_pred             CCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCC-ccccCCCCCcEEeCCCCcCcccCCcc----------cc
Q 043943          542 VHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIP-SQICNMESLVKLNLSYNQLSGFIPNC----------FE  610 (775)
Q Consensus       542 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~----------l~  610 (775)
                      |++|++++|++++ +| .+..++ +|+.|++++|++++..+ ..+..+++|+.|++++|.+.+.+|..          +.
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~-~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLV-NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHH-HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCC-CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            8888888888876 34 677777 89999999998885332 47888899999999999988776653          77


Q ss_pred             CCCCCCEEeCCCCccc
Q 043943          611 DMHGLSSIDISYNRLQ  626 (775)
Q Consensus       611 ~l~~L~~l~ls~n~l~  626 (775)
                      .+++|+.||  +|+++
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            788888887  55554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=1.4e-15  Score=145.43  Aligned_cols=132  Identities=26%  Similarity=0.313  Sum_probs=62.7

Q ss_pred             ccCCCCcEEeCCCccceeecCc------CcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhc
Q 043943          417 GTYPTLSFLDLSHNNFHGQISS------DWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGR  490 (775)
Q Consensus       417 ~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~  490 (775)
                      .....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3445666667777666665554      44445555555555555543 33 4444555555555555544 23434444


Q ss_pred             CCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCC-ccccCcCCCCEEEccCCcCc
Q 043943          491 LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIP-GSLGNLLKVHYLNLSNNEFS  553 (775)
Q Consensus       491 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~  553 (775)
                      +++|++|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            4445555555554443 12 23444444444444444443211 23334444444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=9.9e-13  Score=121.72  Aligned_cols=108  Identities=25%  Similarity=0.358  Sum_probs=68.8

Q ss_pred             CEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCC
Q 043943          519 ELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSY  598 (775)
Q Consensus       519 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  598 (775)
                      +.+++++|.++. +|..+  .++|++|+|++|++++..|..+..+. +|+.|+|++|++++..+..|..+++|++|+|++
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            445555555543 23322  24555555555555555555555555 666666666666655556667777777777777


Q ss_pred             CcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943          599 NQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP  630 (775)
Q Consensus       599 n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p  630 (775)
                      |++++..+..|..+++|+.|++++|++.+.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            77777766677777788888888888777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=3.2e-12  Score=118.67  Aligned_cols=90  Identities=22%  Similarity=0.304  Sum_probs=54.3

Q ss_pred             CCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEe
Q 043943          540 LKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSID  619 (775)
Q Consensus       540 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~  619 (775)
                      ++|+.|+|++|++++..|..+..+. +|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            4445555555555544444444444 555555555555544444556667777777777777766555677777777777


Q ss_pred             CCCCcccccCC
Q 043943          620 ISYNRLQGPVP  630 (775)
Q Consensus       620 ls~n~l~~~~p  630 (775)
                      +++|++.+.++
T Consensus       112 L~~N~~~c~~~  122 (174)
T 2r9u_A          112 LYNNPWDCECR  122 (174)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCcccccc
Confidence            77777766544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=7.6e-12  Score=115.73  Aligned_cols=85  Identities=27%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEec
Q 043943          107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDL  186 (775)
Q Consensus       107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  186 (775)
                      ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            34444444444444433444444444444444444444333333444444444444444444443334444444444444


Q ss_pred             cCCcC
Q 043943          187 SLNQL  191 (775)
Q Consensus       187 ~~n~~  191 (775)
                      ++|.+
T Consensus       110 ~~N~~  114 (170)
T 3g39_A          110 LNNPW  114 (170)
T ss_dssp             CSSCB
T ss_pred             CCCCC
Confidence            44444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=1.2e-11  Score=114.74  Aligned_cols=86  Identities=26%  Similarity=0.208  Sum_probs=41.8

Q ss_pred             CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEec
Q 043943          107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDL  186 (775)
Q Consensus       107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  186 (775)
                      ++|++|+|++|.+.+..|..|..+++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            44555555555555444444555555555555555554333333444455555555554444444444444555555555


Q ss_pred             cCCcCc
Q 043943          187 SLNQLI  192 (775)
Q Consensus       187 ~~n~~~  192 (775)
                      ++|.+.
T Consensus       113 ~~N~~~  118 (174)
T 2r9u_A          113 YNNPWD  118 (174)
T ss_dssp             CSSCBC
T ss_pred             CCCCcc
Confidence            555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.24  E-value=7.9e-10  Score=117.19  Aligned_cols=300  Identities=10%  Similarity=0.019  Sum_probs=124.7

Q ss_pred             CCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCE
Q 043943           80 SSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSL  159 (775)
Q Consensus        80 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  159 (775)
                      ....+|+.+.+.. .++.+-..+|.+|.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|..+ +|+.
T Consensus        43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~  117 (379)
T 4h09_A           43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDD  117 (379)
T ss_dssp             GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSE
T ss_pred             ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccc
Confidence            3344566665543 244344455666666666666543 443444455555 4555555433 332333334332 4555


Q ss_pred             EEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccc
Q 043943          160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL  239 (775)
Q Consensus       160 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  239 (775)
                      +.+..+ +..+....|.++ +|+.+.+..+ ++......|..+.+++.+.+..+.........+. .          +. 
T Consensus       118 i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~----------~~-  182 (379)
T 4h09_A          118 FEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-Y----------NK-  182 (379)
T ss_dssp             EECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-E----------ET-
T ss_pred             ccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-c----------cc-
Confidence            555432 222333333333 3444433322 2222333444455555544443221100000000 0          00 


Q ss_pred             cccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccC
Q 043943          240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI  319 (775)
Q Consensus       240 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  319 (775)
                      .......+.....+..+.+..... ......+..+.+|+.+.+..+ +.......+..+.+|+.+.+..+ ++.+...+|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF  259 (379)
T 4h09_A          183 NKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL  259 (379)
T ss_dssp             TSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT
T ss_pred             ccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc
Confidence            000001122222333333322111 122223334444444444332 22233334444445555444333 222333344


Q ss_pred             CCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccc
Q 043943          320 GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVR  399 (775)
Q Consensus       320 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  399 (775)
                      .++.+|+.+.+..+ +.......|.++++|+.+.+.++.++......|.+|.+|+.+.+..+ ++..-..+|.+|.+|+.
T Consensus       260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST  337 (379)
T ss_dssp             TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred             ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence            45555555554332 22233344555555555555555444333445555555555555433 33233445666666666


Q ss_pred             eeccc
Q 043943          400 VRMNQ  404 (775)
Q Consensus       400 L~l~~  404 (775)
                      +.+..
T Consensus       338 i~ip~  342 (379)
T 4h09_A          338 ISYPK  342 (379)
T ss_dssp             CCCCT
T ss_pred             EEECC
Confidence            66643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=2.6e-13  Score=142.37  Aligned_cols=136  Identities=24%  Similarity=0.219  Sum_probs=57.8

Q ss_pred             CCCcEEEccCCCccCcCChhh-hcCCCCCEEEcCCCcCcccCCcCc-----cCCCCCCEEECCCCccccc----CCcccc
Q 043943          468 SKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILNKNQLFGSLPPEI-----GTLTELELLDLSENRLSNA----IPGSLG  537 (775)
Q Consensus       468 ~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~ls~n~l~~~----~~~~~~  537 (775)
                      ++|++|+|++|.+.......+ ..+++|+.|+|++|.++......+     ...++|++|+|++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            345555555554433222111 223345555555555443222221     1234455555555555431    122234


Q ss_pred             CcCCCCEEEccCCcCccCC----chhHHhhhccccEEECcCCcCccc----CCccccCCCCCcEEeCCCCcCccc
Q 043943          538 NLLKVHYLNLSNNEFSHKI----PTQFEKLQLQLSELDLSQNFLEGE----IPSQICNMESLVKLNLSYNQLSGF  604 (775)
Q Consensus       538 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~  604 (775)
                      .+++|++|+|++|.+++..    +..+.... +|+.|+|++|.++..    ++..+...++|++|+|++|.++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            4455555555555554322    11222222 455555555544432    222333445555555555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.23  E-value=1.4e-09  Score=115.34  Aligned_cols=259  Identities=10%  Similarity=0.030  Sum_probs=138.3

Q ss_pred             CEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEEC
Q 043943           59 RVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSL  138 (775)
Q Consensus        59 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L  138 (775)
                      +++.+.+.. ++ ..+.+.+|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ +......+|..+ +|+.+.+
T Consensus        47 ~i~~v~ip~-~v-t~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l  120 (379)
T 4h09_A           47 RISEVRVNS-GI-TSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF  120 (379)
T ss_dssp             GCSEEEECT-TE-EEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred             CCEEEEeCC-Cc-cChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence            345555542 11 2455688999999999999754 666667789887 7888888755 444555567665 8999999


Q ss_pred             CCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccC------------CcccCCCCCcc
Q 043943          139 YSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSV------------PFFLGNLTNLV  206 (775)
Q Consensus       139 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~------------~~~~~~l~~L~  206 (775)
                      ..+ +.......|.++ +|+.+.+.. .++.+....+..+.+++.+.+.........            ...+..+..+.
T Consensus       121 p~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
T 4h09_A          121 PGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT  197 (379)
T ss_dssp             CTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred             CCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence            876 333445566665 577666553 456666778888999998887765432111            11222333344


Q ss_pred             EEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCc
Q 043943          207 TLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINR  286 (775)
Q Consensus       207 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  286 (775)
                      .+.+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+ 
T Consensus       198 ~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-  273 (379)
T 4h09_A          198 EFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-  273 (379)
T ss_dssp             EEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred             ccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence            44333221 1223334444555555554332 22233334444455555544333 22233334444444554444322 


Q ss_pred             ccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeC
Q 043943          287 LNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLEL  330 (775)
Q Consensus       287 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  330 (775)
                      +.......|.++.+|+.+.+.++.++.+...+|.++.+|+.+.+
T Consensus       274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            22233334444444444444444433333334444444444444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=9.9e-13  Score=137.97  Aligned_cols=160  Identities=20%  Similarity=0.200  Sum_probs=120.4

Q ss_pred             CCCCcEEEccCCCccCcCChhhh-----cCCCCCEEEcCCCcCcccCCcCc-cCCCCCCEEECCCCcccccCCccc----
Q 043943          467 SSKLQVLNLSSNHIGGKIPMELG-----RLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSL----  536 (775)
Q Consensus       467 ~~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~----  536 (775)
                      ++.|++|+|++|.++......+.     ..++|++|+|++|.++......+ ..+++|+.|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35788888888888754443333     23799999999999875433332 346789999999999976544333    


Q ss_pred             -cCcCCCCEEEccCCcCccCCch----hHHhhhccccEEECcCCcCccc----CCccccCCCCCcEEeCCCCcCccc---
Q 043943          537 -GNLLKVHYLNLSNNEFSHKIPT----QFEKLQLQLSELDLSQNFLEGE----IPSQICNMESLVKLNLSYNQLSGF---  604 (775)
Q Consensus       537 -~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~---  604 (775)
                       ...++|++|+|++|.++.....    .+...+ +|++|+|++|.+++.    ++..+...++|+.|+|++|.++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             3468899999999999764333    335555 899999999999753    356677888999999999999864   


Q ss_pred             -CCccccCCCCCCEEeCCCCcccc
Q 043943          605 -IPNCFEDMHGLSSIDISYNRLQG  627 (775)
Q Consensus       605 -~p~~l~~l~~L~~l~ls~n~l~~  627 (775)
                       ++..+...++|++|++++|++..
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCH
Confidence             34455667899999999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=1.1e-10  Score=122.10  Aligned_cols=104  Identities=25%  Similarity=0.227  Sum_probs=70.3

Q ss_pred             EEEcCCC-cCcccCCcCccCCCCCCEEECCC-CcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECc
Q 043943          496 KLILNKN-QLFGSLPPEIGTLTELELLDLSE-NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLS  573 (775)
Q Consensus       496 ~L~L~~n-~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls  573 (775)
                      .++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|+|++..|..|..+. +|+.|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc-CCCEEeCC
Confidence            4566666 666 4666 77777777777775 777776666777777777777777777776666666666 67777777


Q ss_pred             CCcCcccCCccccCCCCCcEEeCCCCcCcc
Q 043943          574 QNFLEGEIPSQICNMESLVKLNLSYNQLSG  603 (775)
Q Consensus       574 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~  603 (775)
                      +|++++..+..|..++ |+.|+|++|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            7777655555555544 6666666666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=6.5e-10  Score=116.30  Aligned_cols=108  Identities=25%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             CcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCC-CCCcccCcccccCCCCCCEEeCcCCCCCCCCch
Q 043943           47 CAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFN-NELFGIIPPQISQLFKLQYLDLSANKLSGKIPP  125 (775)
Q Consensus        47 c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~-~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~  125 (775)
                      |.|..+.|....          .+. .+| . +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..|.
T Consensus         8 C~~~~v~~~~~n----------~l~-~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   74 (347)
T 2ifg_A            8 HGSSGLRCTRDG----------ALD-SLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (347)
T ss_dssp             SSSSCEECCSSC----------CCT-TTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             ccCCEEEcCCCC----------CCC-ccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence            778777774321          232 245 3 66666667777764 666666556666666666666666666666666


Q ss_pred             hccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCc
Q 043943          126 EIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS  168 (775)
Q Consensus       126 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  168 (775)
                      .|.++++|++|+|++|++++..+..|..++ |+.|++.+|.+.
T Consensus        75 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           75 AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            666666666666666666644333333333 555555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=1e-09  Score=113.87  Aligned_cols=40  Identities=13%  Similarity=0.318  Sum_probs=19.8

Q ss_pred             CCCCcEEEcccccCCCC----CCccccCCCCCCEEEcccCcccc
Q 043943          250 VRNLRSLFLYSNELSGS----IPKEIGNLRSLSNLDLSINRLNG  289 (775)
Q Consensus       250 l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~  289 (775)
                      +++|++|+|+.|.+.+.    ++..+..+++|+.|+++.|.++.
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            44555555555555432    12222344556666666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=1.6e-09  Score=112.43  Aligned_cols=155  Identities=21%  Similarity=0.249  Sum_probs=79.5

Q ss_pred             ccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCcc--CCCCCCEEECCC--Cccccc-----CCc
Q 043943          464 IGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIG--TLTELELLDLSE--NRLSNA-----IPG  534 (775)
Q Consensus       464 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~ls~--n~l~~~-----~~~  534 (775)
                      +..+++|+.|+|++|.-. .++. + .+++|++|+|..|.+.......+.  .+++|+.|+|+.  |...+.     +..
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            444555555555554211 1111 2 245566666655554332222222  455666665532  111110     001


Q ss_pred             cc--cCcCCCCEEEccCCcCccCCchhHHh---hhccccEEECcCCcCccc----CCccccCCCCCcEEeCCCCcCcccC
Q 043943          535 SL--GNLLKVHYLNLSNNEFSHKIPTQFEK---LQLQLSELDLSQNFLEGE----IPSQICNMESLVKLNLSYNQLSGFI  605 (775)
Q Consensus       535 ~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~  605 (775)
                      .+  ..+++|+.|+|.+|.+.+..+..+..   ++ +|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++...
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~-~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP-QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG-GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC-CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            11  24677778888777776544444442   33 778888888777653    3333445678888888888776543


Q ss_pred             CccccC-CCCCCEEeCCCCc
Q 043943          606 PNCFED-MHGLSSIDISYNR  624 (775)
Q Consensus       606 p~~l~~-l~~L~~l~ls~n~  624 (775)
                      -..+.. +  ...++++.++
T Consensus       324 ~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          324 KKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHc--CCEEEecCCc
Confidence            333332 2  3456777665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.57  E-value=2.1e-09  Score=105.32  Aligned_cols=21  Identities=19%  Similarity=0.006  Sum_probs=14.2

Q ss_pred             CCCcccceeeCCCC-CEEEEEc
Q 043943           45 NLCAWSGIYCNHDE-RVVGINL   65 (775)
Q Consensus        45 ~~c~w~gv~c~~~~-~v~~l~l   65 (775)
                      ..|.|.|+.|+..+ +|..+..
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~   97 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIIN   97 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEE
T ss_pred             HHHhcCcEEECCCCCEEEEEEe
Confidence            35899999998643 5544443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=1.3e-07  Score=88.33  Aligned_cols=120  Identities=16%  Similarity=0.125  Sum_probs=61.4

Q ss_pred             hhhhcCCCCCEEEcCCC-cCccc----CCcCccCCCCCCEEECCCCcccccC----CccccCcCCCCEEEccCCcCccCC
Q 043943          486 MELGRLSSLNKLILNKN-QLFGS----LPPEIGTLTELELLDLSENRLSNAI----PGSLGNLLKVHYLNLSNNEFSHKI  556 (775)
Q Consensus       486 ~~l~~l~~L~~L~L~~n-~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~  556 (775)
                      ..+...++|++|+|++| .+...    +...+...++|++|+|++|.+....    ...+...++|++|+|++|.+....
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34455667777777776 65432    1223344455555555555554321    112223344444444444443321


Q ss_pred             chhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeC--CCCcCccc----CCccccCCCCCCEEeCCCCccc
Q 043943          557 PTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNL--SYNQLSGF----IPNCFEDMHGLSSIDISYNRLQ  626 (775)
Q Consensus       557 ~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l--s~n~l~~~----~p~~l~~l~~L~~l~ls~n~l~  626 (775)
                      ...                     +...+...++|++|+|  ++|.+...    +...+...++|+.|++++|.+.
T Consensus       110 ~~~---------------------l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILA---------------------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHH---------------------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHH---------------------HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            111                     2344455566777777  66666554    2334455567777777777653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=9.6e-08  Score=89.21  Aligned_cols=91  Identities=16%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             ccCCCCCCCEEECCCC-CCccc----CcccccCCCCCCEEeCcCCCCCCC----CchhccCCCCCCEEECCCcccccc--
Q 043943           78 SFSSFPDLLFLNLFNN-ELFGI----IPPQISQLFKLQYLDLSANKLSGK----IPPEIGQLSFLSELSLYSNCLNGS--  146 (775)
Q Consensus        78 ~~~~l~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~--  146 (775)
                      .+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+...  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3445566666666666 65432    333445556666666666665432    222234445566666666655432  


Q ss_pred             --CcccccCCCCCCEEEc--ccCcCc
Q 043943          147 --IPQSLGNLSKQSLLSL--YNNSLS  168 (775)
Q Consensus       147 --~~~~~~~l~~L~~L~l--~~n~~~  168 (775)
                        +...+...++|++|++  ++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCC
Confidence              2233444445555555  444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.21  E-value=2.5e-07  Score=90.65  Aligned_cols=79  Identities=29%  Similarity=0.344  Sum_probs=44.6

Q ss_pred             CcCCCCEEEccCCcCcc--CCchhHHhhhccccEEECcCCcCcccCCccccCCC--CCcEEeCCCCcCcccCCc------
Q 043943          538 NLLKVHYLNLSNNEFSH--KIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNME--SLVKLNLSYNQLSGFIPN------  607 (775)
Q Consensus       538 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~ls~n~l~~~~p~------  607 (775)
                      ++++|+.|+|++|++++  .+|..+..++ +|+.|+|++|++++.  ..+..+.  .|++|+|++|.+++.+|.      
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            45556666666666655  3334445555 666666666666543  2223333  677777777777665442      


Q ss_pred             -cccCCCCCCEEe
Q 043943          608 -CFEDMHGLSSID  619 (775)
Q Consensus       608 -~l~~l~~L~~l~  619 (775)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             345566666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=3.2e-06  Score=76.46  Aligned_cols=85  Identities=13%  Similarity=0.111  Sum_probs=55.2

Q ss_pred             CCCCEEECCCCcccccCCccccCcCCCCEEEccCCc-CccCCchhHHhh---hccccEEECcCCc-CcccCCccccCCCC
Q 043943          516 TELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNE-FSHKIPTQFEKL---QLQLSELDLSQNF-LEGEIPSQICNMES  590 (775)
Q Consensus       516 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l---~~~L~~L~Ls~n~-l~~~~p~~l~~l~~  590 (775)
                      ..|+.||+++|.++...-..+..+++|++|+|++|. +++..-..+..+   .++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666777666665544556677777777777774 665444445442   1268888888874 66554555667788


Q ss_pred             CcEEeCCCCc
Q 043943          591 LVKLNLSYNQ  600 (775)
Q Consensus       591 L~~L~ls~n~  600 (775)
                      |+.|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888887775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.93  E-value=2.7e-06  Score=77.00  Aligned_cols=82  Identities=15%  Similarity=0.134  Sum_probs=35.0

Q ss_pred             CcEEEccCCCccCcCChhhhcCCCCCEEEcCCCc-CcccCCcCccCC----CCCCEEECCCCc-ccccCCccccCcCCCC
Q 043943          470 LQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ-LFGSLPPEIGTL----TELELLDLSENR-LSNAIPGSLGNLLKVH  543 (775)
Q Consensus       470 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~~~~~~~l~~L~  543 (775)
                      |+.||+++|.++...-..+..+++|+.|+|++|. +++..-..+..+    ++|++|+|++|. +++..-..+..+++|+
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~  142 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK  142 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence            4444444444333333333444444444444442 332222222222    245555555543 4433223344556666


Q ss_pred             EEEccCCc
Q 043943          544 YLNLSNNE  551 (775)
Q Consensus       544 ~L~Ls~n~  551 (775)
                      +|+|+++.
T Consensus       143 ~L~L~~c~  150 (176)
T 3e4g_A          143 YLFLSDLP  150 (176)
T ss_dssp             EEEEESCT
T ss_pred             EEECCCCC
Confidence            66666653

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=97.73  E-value=5.9e-06  Score=83.60  Aligned_cols=42  Identities=24%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             HHHHHHHhcccccceEeecCCCCcEEEEEeC------CCCEEEEEEccCC
Q 043943          730 YDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNSQ  773 (775)
Q Consensus       730 ~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~~  773 (775)
                      +.|+..++-.|.+  +||+|+||+||||++.      +|+.||||+++..
T Consensus        20 ~~ei~~~~~~~~~--~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~   67 (308)
T 4gt4_A           20 LKEISLSAVRFME--ELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDK   67 (308)
T ss_dssp             CCBCCGGGEEEEE--EEEECSSCEEEEEEEC-------CEEEEEEECCC-
T ss_pred             cccCCHHHCeEee--EeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcc
Confidence            3344444445654  4999999999999983      4678999999653

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=97.69  E-value=3.1e-05  Score=78.89  Aligned_cols=46  Identities=30%  Similarity=0.568  Sum_probs=42.6

Q ss_pred             ccccHHHHHHHhcccccc------eEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          726 GKITYDQIIRATNDFDEE------YCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       726 ~~~~~~~l~~aT~~f~~~------~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      ..|++.++.++|++|++.      +.||+|+||.||+|.. +|+.||||++..
T Consensus        13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~   64 (307)
T 2nru_A           13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAA   64 (307)
T ss_dssp             EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECC
T ss_pred             CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEec
Confidence            569999999999999998      8999999999999998 789999999864

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=97.49  E-value=4.5e-05  Score=78.42  Aligned_cols=48  Identities=25%  Similarity=0.567  Sum_probs=44.7

Q ss_pred             cccccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          725 EGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       725 ~~~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      .+.|+++++..++++|...++||+|+||.||+|...+|+.||||++..
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~   64 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKE   64 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEecc
Confidence            467899999999999999999999999999999998999999999864

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=97.31  E-value=0.0001  Score=75.24  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=28.2

Q ss_pred             ccccceEeecCCCCcEEEEEeC------CCCEEEEEEccCC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNSQ  773 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~~  773 (775)
                      +|.-.++||+|+||+||+|++.      +|+.||||+++..
T Consensus        42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~   82 (329)
T 4aoj_A           42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA   82 (329)
T ss_dssp             GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC
T ss_pred             HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC
Confidence            3555677999999999999974      4789999999753

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=97.29  E-value=0.00016  Score=73.99  Aligned_cols=47  Identities=30%  Similarity=0.355  Sum_probs=39.7

Q ss_pred             ccccHHHHHHHhcc----------cccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          726 GKITYDQIIRATND----------FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       726 ~~~~~~~l~~aT~~----------f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ..++++++++||+.          |.....||+|+||.||+|... +|+.||||++..
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~   80 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDL   80 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEET
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEec
Confidence            46899999999976          555678999999999999986 799999999864

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=97.22  E-value=6.7e-05  Score=76.91  Aligned_cols=47  Identities=30%  Similarity=0.576  Sum_probs=40.6

Q ss_pred             cccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943          727 KITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ  773 (775)
Q Consensus       727 ~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~  773 (775)
                      ++++.++..++++|....+||+|+||.||+|+..+|+.||||++...
T Consensus        28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~   74 (321)
T 2qkw_B           28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE   74 (321)
T ss_dssp             --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC
T ss_pred             eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc
Confidence            45667778899999999999999999999999988999999998653

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=97.06  E-value=9.3e-05  Score=75.44  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=31.2

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++|...++||+|+||+||+|... +|+.||||++..
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~   92 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMS   92 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESS
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecc
Confidence            56888899999999999999986 799999999754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.01  E-value=0.00047  Score=63.53  Aligned_cols=116  Identities=14%  Similarity=0.190  Sum_probs=57.4

Q ss_pred             hhcCCCCCEEEcCCC-cCccc----CCcCccCCCCCCEEECCCCcccccCC----ccccCcCCCCEEEccCCcCccCCch
Q 043943          488 LGRLSSLNKLILNKN-QLFGS----LPPEIGTLTELELLDLSENRLSNAIP----GSLGNLLKVHYLNLSNNEFSHKIPT  558 (775)
Q Consensus       488 l~~l~~L~~L~L~~n-~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~  558 (775)
                      +.+-+.|++|+|++| ++...    +...+..-+.|+.|+|++|.+.+...    ..+..-+.|++|+|++|.|....-.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344566777777764 55321    22234445556666666666553221    1222334455555555554432222


Q ss_pred             hHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCc---Cccc----CCccccCCCCCCEEeCCCCc
Q 043943          559 QFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQ---LSGF----IPNCFEDMHGLSSIDISYNR  624 (775)
Q Consensus       559 ~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~---l~~~----~p~~l~~l~~L~~l~ls~n~  624 (775)
                      .                     +-+.+..-+.|++|+|++|.   +...    +...+..-+.|+.|+++.|.
T Consensus       117 a---------------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 R---------------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             H---------------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             H---------------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            2                     22334445567777776542   2221    33445555677777776553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.88  E-value=0.0005  Score=63.35  Aligned_cols=62  Identities=18%  Similarity=0.132  Sum_probs=28.1

Q ss_pred             hcCCCCCEEEcCCCcCcccCC----cCccCCCCCCEEECCCCccccc----CCccccCcCCCCEEEccCC
Q 043943          489 GRLSSLNKLILNKNQLFGSLP----PEIGTLTELELLDLSENRLSNA----IPGSLGNLLKVHYLNLSNN  550 (775)
Q Consensus       489 ~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n  550 (775)
                      ..-+.|+.|+|++|++.....    ..+..-+.|++|+|++|.|.+.    +..++..-+.|++|+|++|
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            334455555555555542211    2223345555555555555432    1122334445566666543

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=96.80  E-value=0.00056  Score=68.72  Aligned_cols=31  Identities=32%  Similarity=0.426  Sum_probs=25.0

Q ss_pred             cccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      |.-.++||+|+||+||||++.+  .||||+++.
T Consensus        38 l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~   68 (307)
T 3omv_A           38 VMLSTRIGSGSFGTVYKGKWHG--DVAVKILKV   68 (307)
T ss_dssp             CCEEEECCCCSSSEEEEEESSS--EEEEEECCC
T ss_pred             eEEeeEEeeCCCcEEEEEEECC--cEEEEEEEe
Confidence            3345679999999999999843  599999863

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.70  E-value=0.0029  Score=54.39  Aligned_cols=60  Identities=17%  Similarity=0.247  Sum_probs=41.7

Q ss_pred             EEECcCCcCc-ccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943          569 ELDLSQNFLE-GEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP  630 (775)
Q Consensus       569 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p  630 (775)
                      .++.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|++.+.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            4556666654 24454332  357788888888887777778888888888888888877655

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=96.65  E-value=0.00076  Score=68.58  Aligned_cols=36  Identities=25%  Similarity=0.244  Sum_probs=30.2

Q ss_pred             hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      .+.|....+||+|+||+||+|+- .+|+.||||+++.
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~   93 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRL   93 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEET
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECH
Confidence            34566677899999999999996 4799999999864

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=96.60  E-value=0.0012  Score=67.29  Aligned_cols=32  Identities=38%  Similarity=0.568  Sum_probs=27.7

Q ss_pred             cccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      |..-..||+|+||+||+|.-. +|+.||||++.
T Consensus        76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~  108 (346)
T 4fih_A           76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMD  108 (346)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred             cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEe
Confidence            555577999999999999974 79999999984

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=96.53  E-value=0.00076  Score=71.91  Aligned_cols=44  Identities=30%  Similarity=0.427  Sum_probs=38.5

Q ss_pred             ccHHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          728 ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       728 ~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      +.++++..++++|...++||+|+||+||+|+.. +|+.||||++.
T Consensus        64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~  108 (437)
T 4aw2_A           64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILN  108 (437)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred             chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEE
Confidence            456777778899999999999999999999986 47899999985

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=96.52  E-value=0.0014  Score=65.33  Aligned_cols=28  Identities=21%  Similarity=0.264  Sum_probs=24.8

Q ss_pred             eEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          744 YCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .+||+||||+||+|... .|+.||||++.
T Consensus        32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~   60 (290)
T 3fpq_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQ   60 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEc
Confidence            46999999999999874 68999999985

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=96.47  E-value=0.001  Score=70.60  Aligned_cols=37  Identities=8%  Similarity=0.043  Sum_probs=31.9

Q ss_pred             HHhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943          735 RATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN  771 (775)
Q Consensus       735 ~aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~  771 (775)
                      ..++.|...++||+||||+||+|.. .+|+.||||++.
T Consensus        75 ~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~  112 (413)
T 3dzo_A           75 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPY  112 (413)
T ss_dssp             SCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEC
T ss_pred             CCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEe
Confidence            3456677788999999999999994 579999999987

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=96.43  E-value=0.0015  Score=66.83  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=23.4

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      ++|.-.+.||+||||+||+|.- .+|+.||||++..
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~   59 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINI   59 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEEC
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEeh
Confidence            3466667899999999999986 4799999999853

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=96.37  E-value=0.0015  Score=69.06  Aligned_cols=45  Identities=22%  Similarity=0.368  Sum_probs=39.1

Q ss_pred             cccHHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          727 KITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       727 ~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .+.++++...+++|...++||+|+||+||++... +|+.||||+++
T Consensus        50 ~~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~   95 (412)
T 2vd5_A           50 VVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMN   95 (412)
T ss_dssp             HHHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred             hhhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEe
Confidence            3556777777899999999999999999999984 79999999985

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=96.36  E-value=0.0022  Score=65.53  Aligned_cols=47  Identities=28%  Similarity=0.447  Sum_probs=26.9

Q ss_pred             cccHHHHHHHhccccc---------ceEeecCCCCcEEEEEeC----CCCEEEEEEccCC
Q 043943          727 KITYDQIIRATNDFDE---------EYCIGKGAQGSLYKAKLQ----SEDLIAVKKFNSQ  773 (775)
Q Consensus       727 ~~~~~~l~~aT~~f~~---------~~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~~  773 (775)
                      ..++.+...++..|..         .++||+|+||.||+|...    .+..||||++...
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~   88 (325)
T 3kul_A           29 PHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAG   88 (325)
T ss_dssp             --------------CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTT
T ss_pred             cccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCC
Confidence            3556677777766654         488999999999999984    3456999998753

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=96.35  E-value=0.0022  Score=67.26  Aligned_cols=34  Identities=35%  Similarity=0.516  Sum_probs=29.0

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      +.|..-.+||+|+||.||+|.-. +|+.||||++.
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~  185 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMD  185 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEe
Confidence            34666688999999999999974 79999999985

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=96.33  E-value=0.002  Score=66.18  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=28.4

Q ss_pred             cccccceEeecCCCCcEEEEEeCC------CCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQS------EDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~------g~~vAVK~l~~~  773 (775)
                      ++|.-.+.||+|+||+||+|.+.+      ++.||||++...
T Consensus        64 ~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~  105 (353)
T 4ase_A           64 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG  105 (353)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTT
T ss_pred             HHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccc
Confidence            345556789999999999998742      358999999754

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=96.32  E-value=0.0025  Score=66.74  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=28.8

Q ss_pred             ccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      .|.-.++||+|+||+||+|.- .+|+.||||++..
T Consensus        55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~   89 (398)
T 4b99_A           55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPN   89 (398)
T ss_dssp             SEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETT
T ss_pred             CeEEEEEEecccCeEEEEEEECCCCCEEEEEEECc
Confidence            455567899999999999986 4799999999864

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=96.22  E-value=0.0022  Score=64.38  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~  771 (775)
                      ++|.-.++||+|+||+||+|+- .+|+.||||++.
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~   66 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE   66 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEE
Confidence            3577778899999999999986 479999999984

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=96.02  E-value=0.0033  Score=62.99  Aligned_cols=34  Identities=24%  Similarity=0.458  Sum_probs=27.6

Q ss_pred             ccccceEeecCCCCcEEEEEe----CCCCEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKL----QSEDLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l----~~g~~vAVK~l~~  772 (775)
                      +|.-.+.||+|+||+||+|+-    ..|+.||||+++.
T Consensus        25 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~   62 (304)
T 3ubd_A           25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKK   62 (304)
T ss_dssp             GEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEES
T ss_pred             ccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEeh
Confidence            466667899999999999975    2478999999853

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=95.98  E-value=0.0035  Score=64.00  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=29.3

Q ss_pred             cccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      ++|.-.++||+|+||+||+|+. .|+.||||++..
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~   57 (322)
T 3soc_A           24 MPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPI   57 (322)
T ss_dssp             EEEEEEEEEECSTTCEEEEEEE-TTEEEEEEEECG
T ss_pred             hhchhhheecccCceEEEEEEE-CCCEEEEEEeec
Confidence            4567778899999999999998 589999999853

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=95.97  E-value=0.0028  Score=66.93  Aligned_cols=43  Identities=19%  Similarity=0.349  Sum_probs=36.6

Q ss_pred             cHHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          729 TYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       729 ~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .++++..++++|...++||+|+||+||+|+.. +|+.||||++.
T Consensus        60 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~  103 (410)
T 3v8s_A           60 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLS  103 (410)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             HHHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEe
Confidence            34566667789999999999999999999985 58999999974

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=95.89  E-value=0.004  Score=66.98  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=31.9

Q ss_pred             hcccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ  773 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~  773 (775)
                      .++|.-.++||+|+||.||+|...+++.||||+++.+
T Consensus       187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~  223 (454)
T 1qcf_A          187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG  223 (454)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT
T ss_pred             hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC
Confidence            3456677889999999999999988999999999753

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=95.89  E-value=0.0044  Score=64.66  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=29.4

Q ss_pred             cccccceEeecCCCCcEEEEEeC----CCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ----SEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~~  773 (775)
                      ++|...++||+|+||.||+|+..    +|..||||+++..
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~   84 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVG   84 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTT
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCc
Confidence            45677789999999999999985    5788999998753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.84  E-value=0.0092  Score=51.20  Aligned_cols=56  Identities=20%  Similarity=0.287  Sum_probs=34.7

Q ss_pred             EEEccCCcCc-cCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCc
Q 043943          544 YLNLSNNEFS-HKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLS  602 (775)
Q Consensus       544 ~L~Ls~n~l~-~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~  602 (775)
                      .++.+++.++ ..+|..   ++.+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4455555554 233322   2236777777777777555666777778888888888764

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=95.84  E-value=0.0035  Score=65.29  Aligned_cols=38  Identities=16%  Similarity=0.229  Sum_probs=30.5

Q ss_pred             HhcccccceEeecCCCCcEEEEE------eCCCCEEEEEEccCC
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAK------LQSEDLIAVKKFNSQ  773 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~------l~~g~~vAVK~l~~~  773 (775)
                      ..+.|...++||+|+||+||+|+      ..+|+.||||++...
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~  106 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA  106 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC
Confidence            35667778899999999999994      457899999998753

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=95.82  E-value=0.0059  Score=60.75  Aligned_cols=42  Identities=12%  Similarity=0.156  Sum_probs=32.8

Q ss_pred             HHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          731 DQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       731 ~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      ..+.....-+.-.+.||+|+||.||+|...+|+.||||.+..
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~  124 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKV  124 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC
T ss_pred             HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEEC
Confidence            344444444555588999999999999998899999999863

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=95.73  E-value=0.0056  Score=63.53  Aligned_cols=42  Identities=21%  Similarity=0.314  Sum_probs=25.6

Q ss_pred             HHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          731 DQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       731 ~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      .+.....++|.-.++||+|+||.||+|... +|+.||||++..
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   58 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQ   58 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEEC
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEec
Confidence            344566788998999999999999999984 689999999854

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=95.68  E-value=0.0062  Score=63.66  Aligned_cols=36  Identities=28%  Similarity=0.490  Sum_probs=30.5

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~  773 (775)
                      ++|.-.+.||+|+||.||+|... +|+.||||++...
T Consensus       114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~  150 (377)
T 3cbl_A          114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET  150 (377)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTT
T ss_pred             HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEcccc
Confidence            34666688999999999999996 7899999998653

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=95.63  E-value=0.0078  Score=62.57  Aligned_cols=43  Identities=16%  Similarity=0.267  Sum_probs=35.1

Q ss_pred             HHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          730 YDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       730 ~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      +.......++|...+.||+|+||.||+|... +|+.||||.+..
T Consensus        86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~  129 (365)
T 2y7j_A           86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEV  129 (365)
T ss_dssp             HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEET
T ss_pred             chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEc
Confidence            3444455667888899999999999999985 799999998754

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=95.62  E-value=0.0025  Score=66.22  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             ccccHHHHHHHhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          726 GKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       726 ~~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      ..+++++-....++|...++||+|+||+||+|+. .+|+.||||++..
T Consensus        23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~   70 (360)
T 3llt_A           23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN   70 (360)
T ss_dssp             GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS
T ss_pred             eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc
Confidence            3455655555678898889999999999999998 4789999999863

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=95.62  E-value=0.0058  Score=67.67  Aligned_cols=34  Identities=29%  Similarity=0.564  Sum_probs=30.3

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      ++|.-.++||+|+||+||++.-. +|+.||||++.
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~  223 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD  223 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEe
Confidence            66888899999999999999874 69999999984

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=95.61  E-value=0.007  Score=65.00  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=30.9

Q ss_pred             cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~  773 (775)
                      +.|.-..+||+|+||.||+|...++..||||+++.+
T Consensus       184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~  219 (452)
T 1fmk_A          184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG  219 (452)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT
T ss_pred             hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccC
Confidence            446667889999999999999988889999999753

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=95.61  E-value=0.0059  Score=61.83  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             hcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      .++|.-...||+|+||+||+|+. +|+.||||++..
T Consensus        36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~   70 (309)
T 3p86_A           36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILME   70 (309)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECC
T ss_pred             hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecC
Confidence            35577778899999999999998 789999999864

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=95.57  E-value=0.0061  Score=64.02  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=30.4

Q ss_pred             cccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      +.|...++||+|+||.||+|...+|+.||||++..
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~   90 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNL   90 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEEC
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEec
Confidence            34667788999999999999998899999999853

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=95.53  E-value=0.0056  Score=61.04  Aligned_cols=36  Identities=19%  Similarity=0.219  Sum_probs=28.0

Q ss_pred             cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~  773 (775)
                      ++|...+.||+|+||.||+|...++..||||++...
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~   59 (283)
T 3gen_A           24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG   59 (283)
T ss_dssp             GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT
T ss_pred             HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC
Confidence            346667889999999999999988889999998753

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=95.52  E-value=0.0075  Score=62.42  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=29.9

Q ss_pred             cccccceEeecCCCCcEEEEEe----CCCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL----QSEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l----~~g~~vAVK~l~  771 (775)
                      ++|...++||+|+||.||+|..    .+|+.||||++.
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~   91 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLK   91 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEES
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEe
Confidence            5677788999999999999998    478999999985

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=95.46  E-value=0.0089  Score=61.59  Aligned_cols=32  Identities=13%  Similarity=0.070  Sum_probs=28.0

Q ss_pred             ccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          741 DEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       741 ~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      .-...||+|+||.||+|.-++|+.||||.++.
T Consensus        98 ~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~  129 (397)
T 4gyi_A           98 SVGSRIGVGKESDIMIVADEKGKQKVLKIHRL  129 (397)
T ss_dssp             EEEEEEEECSSEEEEEEECTTCCEEEEEEECT
T ss_pred             EecCEeeeCCceEEEEEECCCCCEEEEEEEec
Confidence            34577999999999999999999999998753

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=95.44  E-value=0.0074  Score=64.10  Aligned_cols=34  Identities=38%  Similarity=0.656  Sum_probs=29.1

Q ss_pred             ccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      .|...++||+|+||.||+|+.. +|+.||||++..
T Consensus        55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~   89 (420)
T 1j1b_A           55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ   89 (420)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred             eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecc
Confidence            3556688999999999999985 699999999854

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=95.41  E-value=0.0026  Score=64.98  Aligned_cols=45  Identities=22%  Similarity=0.414  Sum_probs=36.2

Q ss_pred             ccHHHHHHHhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          728 ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       728 ~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      +.+.++..+++.|.-.+.||+|+||.||+|.. .+|+.||||++..
T Consensus        14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~   59 (326)
T 2x7f_A           14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDV   59 (326)
T ss_dssp             --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEec
Confidence            44555556678888889999999999999998 4789999999853

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=95.40  E-value=0.011  Score=58.96  Aligned_cols=35  Identities=11%  Similarity=0.054  Sum_probs=29.3

Q ss_pred             ccccceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ  773 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~  773 (775)
                      .|.-...||+|+||.||+|.-. +|+.||||++...
T Consensus        32 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~   67 (286)
T 3uqc_A           32 RYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQ   67 (286)
T ss_dssp             TEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTT
T ss_pred             cEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcc
Confidence            3555678999999999999985 4899999999753

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=95.36  E-value=0.0063  Score=63.62  Aligned_cols=35  Identities=9%  Similarity=0.047  Sum_probs=30.1

Q ss_pred             hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN  771 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~  771 (775)
                      ++.|...+.||+|+||.||+|.. .+|+.||||++.
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~  107 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPY  107 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEe
Confidence            45566678899999999999997 579999999985

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=95.30  E-value=0.0098  Score=61.36  Aligned_cols=36  Identities=25%  Similarity=0.469  Sum_probs=30.9

Q ss_pred             hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++.|.....||+|+||.||+|+.. +|+.||||++..
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~   88 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKK   88 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEecc
Confidence            456777789999999999999986 578999999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=95.27  E-value=0.0086  Score=64.26  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~  773 (775)
                      ++|.-.++||+|+||.||+|.. .|+.||||+++.+
T Consensus       193 ~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~  227 (450)
T 1k9a_A          193 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND  227 (450)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSC
T ss_pred             HHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCc
Confidence            4566678899999999999999 5889999999754

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=95.21  E-value=0.0077  Score=62.62  Aligned_cols=37  Identities=30%  Similarity=0.384  Sum_probs=29.9

Q ss_pred             HhcccccceEeecCCCCcEEEEEeCC------CCEEEEEEccC
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKLQS------EDLIAVKKFNS  772 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l~~------g~~vAVK~l~~  772 (775)
                      .+++|.-.++||+|+||.||+|...+      |+.||||++..
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~   75 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPS   75 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEET
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeec
Confidence            35577778899999999999999864      47899999764

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=95.20  E-value=0.0097  Score=60.29  Aligned_cols=45  Identities=13%  Similarity=0.244  Sum_probs=34.8

Q ss_pred             ccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          728 ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       728 ~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      +.++.+.-..+.|.....||+|+||.||++...+|+.||||++..
T Consensus        18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~   62 (313)
T 3cek_A           18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNL   62 (313)
T ss_dssp             --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEEC
T ss_pred             CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEecc
Confidence            333444344566777889999999999999998899999999853

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=95.19  E-value=0.0097  Score=65.40  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=30.8

Q ss_pred             cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~  773 (775)
                      +.|.-..+||+|+||.||+|...++..||||+++.+
T Consensus       267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~  302 (535)
T 2h8h_A          267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG  302 (535)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTT
T ss_pred             hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCC
Confidence            346667889999999999999988889999999753

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=95.18  E-value=0.0098  Score=61.92  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             cccccceEeecCCCCcEEEEEe--------CCCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL--------QSEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l--------~~g~~vAVK~l~~~  773 (775)
                      ++|.-.+.||+|+||.||+|+.        .+|..||||++...
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~  124 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD  124 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC
Confidence            4566678899999999999986        24568999999753

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=95.18  E-value=0.0089  Score=62.59  Aligned_cols=37  Identities=24%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             HhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      .+++|...++||+|+||+||+|.-. +|+.||||++..
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~   89 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKN   89 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEec
Confidence            3567888889999999999999875 688999999864

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=95.16  E-value=0.014  Score=59.73  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=28.1

Q ss_pred             cccccceEeecCCCCcEEEEEe--------CCCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL--------QSEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l--------~~g~~vAVK~l~~~  773 (775)
                      ++|.-.+.||+|+||.||+|..        .+|+.||||++...
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~   78 (334)
T 2pvf_A           35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD   78 (334)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTT
T ss_pred             hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccC
Confidence            4566678899999999999987        35789999998753

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=95.12  E-value=0.012  Score=61.31  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=28.6

Q ss_pred             cccccceEeecCCCCcEEEEEeC------CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~  772 (775)
                      ++|.-.++||+|+||+||+|.+.      +|+.||||++..
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~  111 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPE  111 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCS
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccc
Confidence            34666788999999999999963      466899999864

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=95.09  E-value=0.011  Score=57.89  Aligned_cols=31  Identities=19%  Similarity=0.202  Sum_probs=26.7

Q ss_pred             cceEeecCCCCcEEEEEe-CCCCE--EEEEEccC
Q 043943          742 EEYCIGKGAQGSLYKAKL-QSEDL--IAVKKFNS  772 (775)
Q Consensus       742 ~~~~iG~Gg~G~VYkg~l-~~g~~--vAVK~l~~  772 (775)
                      -...||+|+||.||+|.. .+|+.  ||||.+..
T Consensus        51 i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~   84 (258)
T 1zth_A           51 MGGVISTGKEANVFYADGVFDGKPVAMAVKIYRI   84 (258)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             hCCEEeecceEEEEEEEEcCCCcEeeEEEEEEEC
Confidence            346799999999999998 78999  99998643

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=95.08  E-value=0.014  Score=59.70  Aligned_cols=46  Identities=26%  Similarity=0.375  Sum_probs=26.3

Q ss_pred             ccHHHHHHHhccccc---------ceEeecCCCCcEEEEEeCC-----CCEEEEEEccCC
Q 043943          728 ITYDQIIRATNDFDE---------EYCIGKGAQGSLYKAKLQS-----EDLIAVKKFNSQ  773 (775)
Q Consensus       728 ~~~~~l~~aT~~f~~---------~~~iG~Gg~G~VYkg~l~~-----g~~vAVK~l~~~  773 (775)
                      +...+..+++..|..         .++||+|+||.||+|....     +..||||++...
T Consensus        25 ~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~   84 (333)
T 1mqb_A           25 AMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG   84 (333)
T ss_dssp             -------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTT
T ss_pred             cccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCC
Confidence            344555566666655         4889999999999999742     236999998753

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=95.08  E-value=0.012  Score=60.42  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=29.2

Q ss_pred             hccccc-ceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          737 TNDFDE-EYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~-~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      +++|.- +++||+|+||+||+|... +|+.||||++..
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~   64 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYD   64 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEES
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecC
Confidence            344555 457999999999999986 699999999854

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=95.07  E-value=0.01  Score=61.11  Aligned_cols=35  Identities=29%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      +.|...+.||+|+||.||+|.- .+|+.||||++..
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~   89 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSY   89 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEES
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEcc
Confidence            4477778999999999999986 5899999999854

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=95.06  E-value=0.01  Score=61.19  Aligned_cols=35  Identities=31%  Similarity=0.536  Sum_probs=30.0

Q ss_pred             hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .++|.-.++||+|+||+||+|+.. +|+.||||++.
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~   57 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLK   57 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEE
Confidence            456878889999999999999975 68999999985

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=95.05  E-value=0.0094  Score=62.12  Aligned_cols=35  Identities=11%  Similarity=0.104  Sum_probs=30.0

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ..|...++||+|+||.||+|... +|+.||||++..
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~   97 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTM   97 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEe
Confidence            44666788999999999999964 789999999865

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=95.03  E-value=0.01  Score=60.85  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      ++.|.....||+|+||.||+|.- .+|+.||||++..
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~   59 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKK   59 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEES
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEeh
Confidence            45688889999999999999985 5789999999864

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=95.01  E-value=0.015  Score=59.72  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=31.7

Q ss_pred             HhcccccceEeecCCCCcEEEEEeC------CCCEEEEEEccCC
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNSQ  773 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~~  773 (775)
                      ..++|.-.+.||+|+||.||+|...      +|+.||||++...
T Consensus        45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~   88 (343)
T 1luf_A           45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE   88 (343)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTT
T ss_pred             cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccc
Confidence            4567888899999999999999984      3478999998753

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=94.97  E-value=0.01  Score=60.36  Aligned_cols=36  Identities=19%  Similarity=0.352  Sum_probs=30.0

Q ss_pred             hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      .+.|.-..+||+|+||.||+|.. .+|+.||||++..
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~   78 (320)
T 3a99_A           42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEK   78 (320)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEG
T ss_pred             cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEec
Confidence            34566778899999999999985 5789999999853

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=94.96  E-value=0.01  Score=64.58  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=30.4

Q ss_pred             cccccceEeecCCCCcEEEEEeCC-CCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQS-EDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~~~  773 (775)
                      .+|.-.++||+|+||.||+|...+ |+.||||+++.+
T Consensus       220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~  256 (495)
T 1opk_A          220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED  256 (495)
T ss_dssp             GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS
T ss_pred             HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc
Confidence            346667889999999999999964 889999999754

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=94.93  E-value=0.0093  Score=61.14  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=30.3

Q ss_pred             hcccccceEeecCCCCcEEEEEeCCCCEEEEEEcc
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN  771 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~  771 (775)
                      .+.|.-.++||+|+||.||+|+. .|+.||||++.
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~   69 (337)
T 3mdy_A           36 AKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFF   69 (337)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEE
T ss_pred             ccceEEEeEeecCCCeEEEEEEE-CCceEEEEEEe
Confidence            45688889999999999999998 58999999974

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=94.93  E-value=0.015  Score=59.83  Aligned_cols=39  Identities=21%  Similarity=0.349  Sum_probs=32.8

Q ss_pred             HHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          733 IIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       733 l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      +....+.|.-...||+|+||.||+|... +|+.||||++.
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~   60 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMN   60 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehh
Confidence            3445677888899999999999999874 68899999874

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=94.87  E-value=0.015  Score=58.82  Aligned_cols=38  Identities=16%  Similarity=0.281  Sum_probs=29.5

Q ss_pred             HHhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          735 RATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       735 ~aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      .-.++|...++||+|+||.||+|.. .+|+.||||++..
T Consensus        28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~   66 (312)
T 2iwi_A           28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPR   66 (312)
T ss_dssp             -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCS
T ss_pred             hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEec
Confidence            3456788889999999999999986 4789999999854

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=94.86  E-value=0.011  Score=60.00  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=33.4

Q ss_pred             HHHHHHhcccccceEeecCCCCcEEEEEe------CCCCEEEEEEccCC
Q 043943          731 DQIIRATNDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNSQ  773 (775)
Q Consensus       731 ~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~~  773 (775)
                      .+..-..++|.-.+.||+|+||+||+|..      .+|+.||||++...
T Consensus        20 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~   68 (316)
T 2xir_A           20 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG   68 (316)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT
T ss_pred             cceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccC
Confidence            33333456788889999999999999985      35689999998653

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=94.85  E-value=0.0061  Score=62.08  Aligned_cols=41  Identities=22%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             HHHHHhcccccceEeecCCCCcEEEEEeC------CCCEEEEEEccC
Q 043943          732 QIIRATNDFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNS  772 (775)
Q Consensus       732 ~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~  772 (775)
                      +...+.++|...+.||+|+||.||+|+..      +|+.||||++..
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~   65 (322)
T 1p4o_A           19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNE   65 (322)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCT
T ss_pred             hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccc
Confidence            33345667888899999999999999874      368899999864

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=94.84  E-value=0.012  Score=61.61  Aligned_cols=35  Identities=23%  Similarity=0.473  Sum_probs=30.1

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++|.-.++||+|+||+||+|+.. +|+.||||+++.
T Consensus        52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k   87 (396)
T 4dc2_A           52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKK   87 (396)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEG
T ss_pred             hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEh
Confidence            45777889999999999999985 578999999853

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=94.83  E-value=0.02  Score=60.78  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             HhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      ..+.|.-.+.||+|+||+||+|.-. +|+.||||++.
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~  169 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIIS  169 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEE
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEE
Confidence            3567888889999999999999874 68999999975

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=94.82  E-value=0.018  Score=59.96  Aligned_cols=34  Identities=35%  Similarity=0.456  Sum_probs=29.7

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      ++|.-.++||+|+||.||+|+.. +|+.||||++.
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~   72 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQ   72 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEE
Confidence            45777889999999999999985 58899999985

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=94.80  E-value=0.014  Score=58.99  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=29.4

Q ss_pred             cccccceEeecCCCCcEEEEEe------CCCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~~  773 (775)
                      ++|.-.+.||+|+||.||+|+.      .+|+.||||++...
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~   64 (313)
T 1t46_A           23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPS   64 (313)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT
T ss_pred             hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcc
Confidence            3466678899999999999985      35789999998753

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=94.77  E-value=0.019  Score=58.07  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=28.1

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      ++|.-.+.||+|+||.||+|.. .+|+.||||++..
T Consensus        32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~   67 (310)
T 2wqm_A           32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQI   67 (310)
T ss_dssp             GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECT
T ss_pred             cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeeh
Confidence            4577778899999999999996 4799999999863

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=94.75  E-value=0.017  Score=59.04  Aligned_cols=37  Identities=22%  Similarity=0.435  Sum_probs=31.3

Q ss_pred             HhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      ..++|....+||+|+||+||+|.- .+|+.||||++..
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   69 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRL   69 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCC
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcc
Confidence            346688889999999999999985 4789999999863

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=94.73  E-value=0.014  Score=60.73  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=25.7

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      +.|.....||+|+||.||+|.- .+|+.||||++..
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~   64 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR   64 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTTEEEEEEECSS
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCc
Confidence            4566678899999999999985 4789999999854

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=94.73  E-value=0.016  Score=61.71  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=29.3

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ..|...++||+|+||.||+|.-. +|+.||||++..
T Consensus        97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~  132 (429)
T 3kvw_A           97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRN  132 (429)
T ss_dssp             TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECS
T ss_pred             CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECC
Confidence            34666788999999999999875 588999999864

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=94.69  E-value=0.018  Score=59.90  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=23.8

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      +.|.....||+|+||.||+|.- .+|+.||||++..
T Consensus        25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~   60 (367)
T 1cm8_A           25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYR   60 (367)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSS
T ss_pred             ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCc
Confidence            4566778899999999999997 4799999999853

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=94.69  E-value=0.015  Score=61.91  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=28.4

Q ss_pred             hcccccceEeecCCCCcE-EEEEeCCCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSL-YKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~V-Ykg~l~~g~~vAVK~l~~  772 (775)
                      ...|....+||+|+||+| |++. .+|+.||||++..
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~-~~~~~vAvK~~~~   58 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGM-FDNRDVAVKRILP   58 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEE-SSSSEEEEEEECT
T ss_pred             cEEEecCCeeecCcCEEEEEEEE-eCCeEEEEEEECH
Confidence            456788899999999995 5555 4899999999864

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=94.67  E-value=0.012  Score=60.41  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=30.9

Q ss_pred             hcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      .++|.-...||+|+||.||+|+. +|+.||||++..
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~   75 (342)
T 1b6c_B           41 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS   75 (342)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG
T ss_pred             cccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc
Confidence            45688889999999999999998 699999999853

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=94.66  E-value=0.016  Score=58.67  Aligned_cols=35  Identities=29%  Similarity=0.561  Sum_probs=24.4

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++|.....||+|+||.||+|... +|+.||||++..
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   60 (318)
T 2dyl_A           25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRR   60 (318)
T ss_dssp             GGEEEEEEC------CEEEEEETTTCCEEEEEEEET
T ss_pred             ccccccceeeecCCeeEEEEEEecCCeEEEEEEecc
Confidence            45777788999999999999985 799999999864

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=94.65  E-value=0.02  Score=58.38  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      ++|.-.++||+|+||+||+|.- .+|+.||||++..
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   71 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP   71 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc
Confidence            4566678899999999999985 5789999999864

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=94.64  E-value=0.015  Score=61.10  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=29.7

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      +.|.-.++||+|+||+||+|.- .+|+.||||++..
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   72 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKS   72 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEec
Confidence            4566778899999999999985 4688999999864

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=94.63  E-value=0.013  Score=59.84  Aligned_cols=37  Identities=27%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             hcccccceEeecCCCCcEEEEEeCC------CCEEEEEEccCC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQS------EDLIAVKKFNSQ  773 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~~------g~~vAVK~l~~~  773 (775)
                      .++|.-.+.||+|+||.||+|....      +..||||++...
T Consensus        45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~   87 (333)
T 2i1m_A           45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKST   87 (333)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTT
T ss_pred             HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccc
Confidence            4667778899999999999999742      247999998653

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=94.58  E-value=0.022  Score=58.74  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=29.4

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      ++|...+.||+|+||.||+++.. +|+.||||++.
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~   75 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILD   75 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEE
Confidence            45677788999999999999975 69999999974

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=94.58  E-value=0.02  Score=62.51  Aligned_cols=34  Identities=26%  Similarity=0.514  Sum_probs=30.0

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      ++|...++||+|+||.||+|... +|+.||||++.
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~  219 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLN  219 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEE
Confidence            56777789999999999999985 69999999984

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=94.56  E-value=0.018  Score=59.24  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=29.5

Q ss_pred             cccccceEeecCCCCcEEEEEeCCCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~  771 (775)
                      ++|.-...||+|+||.||+|.. +|+.||||++.
T Consensus        31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~   63 (348)
T 2pml_X           31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYE   63 (348)
T ss_dssp             TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEE
T ss_pred             CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEee
Confidence            4577778899999999999999 99999999975

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=94.55  E-value=0.021  Score=57.97  Aligned_cols=34  Identities=18%  Similarity=0.324  Sum_probs=27.9

Q ss_pred             cccceEeecCCCCcEEEEEeC-----CCCEEEEEEccCC
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQ-----SEDLIAVKKFNSQ  773 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~-----~g~~vAVK~l~~~  773 (775)
                      |...+.||+|+||+||+|.+.     +|+.||||++...
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~   71 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD   71 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc
Confidence            355578999999999999863     6789999998754

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=94.49  E-value=0.021  Score=59.49  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=29.8

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      +.|.....||+|+||.||+|.-. +|+.||||++..
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~   77 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSR   77 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecc
Confidence            45666788999999999999864 789999999864

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=94.47  E-value=0.02  Score=59.16  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=29.3

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      +.|.....||+|+||.||+|.-. +|+.||||++..
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~   59 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSR   59 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESS
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecc
Confidence            34566678999999999999874 689999999864

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=94.46  E-value=0.023  Score=57.51  Aligned_cols=36  Identities=22%  Similarity=0.307  Sum_probs=29.3

Q ss_pred             cccccceEeecCCCCcEEEEEe------CCCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~~  773 (775)
                      ++|.-...||+|+||.||+|..      .+|+.||||++...
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~   64 (314)
T 2ivs_A           23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN   64 (314)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT
T ss_pred             hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC
Confidence            4566678899999999999986      35689999998653

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=94.45  E-value=0.021  Score=58.38  Aligned_cols=35  Identities=23%  Similarity=0.504  Sum_probs=29.4

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      +.|....+||+|+||.||+|... +|+.||||++..
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~   60 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLE   60 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEES
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEec
Confidence            34666788999999999999985 589999999743

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=94.42  E-value=0.019  Score=59.99  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=28.4

Q ss_pred             cccccceEeecCCCCcEEEEEe--------CCCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL--------QSEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l--------~~g~~vAVK~l~~~  773 (775)
                      +.|.-.++||+|+||+||+|+.        .++..||||++...
T Consensus        69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~  112 (382)
T 3tt0_A           69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD  112 (382)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT
T ss_pred             hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc
Confidence            4466668899999999999986        23467999998653

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=94.41  E-value=0.02  Score=59.67  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=22.7

Q ss_pred             cccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          740 FDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      +...++||+|+||.||+|.. .+|+.||||++..
T Consensus        91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~  124 (373)
T 2x4f_A           91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKT  124 (373)
T ss_dssp             EEEEEECC-----CEEEEEETTTCCEEEEEEEEC
T ss_pred             eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcc
Confidence            34457799999999999987 4799999999864

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=94.37  E-value=0.028  Score=58.23  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=30.7

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~  773 (775)
                      ++|...++||+|+||.||+|... +|+.||||++...
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~   69 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLE   69 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccc
Confidence            45777789999999999999985 6899999998643

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=94.30  E-value=0.021  Score=62.70  Aligned_cols=35  Identities=26%  Similarity=0.505  Sum_probs=30.6

Q ss_pred             hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .++|...++||+|+||.||+|... +|+.||||++.
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~  218 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLE  218 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE
Confidence            356778899999999999999985 79999999984

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=94.30  E-value=0.017  Score=59.65  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=28.0

Q ss_pred             cccccceEeecCCCCcEEEEEeCC---------CCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQS---------EDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~---------g~~vAVK~l~~  772 (775)
                      ++|.-.+.||+|+||.||+|....         |+.||||++..
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~   85 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAK   85 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEET
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecc
Confidence            456677889999999999999863         88999999864

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=94.29  E-value=0.024  Score=57.68  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=28.7

Q ss_pred             ccccceEeecCCCCcEEEEEe-----CCCCEEEEEEccCC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKL-----QSEDLIAVKKFNSQ  773 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l-----~~g~~vAVK~l~~~  773 (775)
                      .|.-.+.||+|+||.||+|..     .+|+.||||++...
T Consensus        42 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~   81 (326)
T 2w1i_A           42 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS   81 (326)
T ss_dssp             GEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC
T ss_pred             HceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC
Confidence            355567899999999999985     36889999998653

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=94.28  E-value=0.02  Score=61.25  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=30.3

Q ss_pred             hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN  771 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~  771 (775)
                      .++|...++||+|+||.||+|.- .+|+.||||++.
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~  182 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILK  182 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEE
Confidence            35677889999999999999986 478999999985

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=94.24  E-value=0.022  Score=58.30  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=29.2

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .+|.-..+||+|+||.||+|... +|+.||||++.
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~   62 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLL   62 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEec
Confidence            45667788999999999999964 78999999874

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=94.22  E-value=0.03  Score=57.06  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=26.2

Q ss_pred             cccccceEeecCCCCcEEEEEe------CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~  772 (775)
                      ++|.-...||+|+||.||+|..      .+|+.||||++..
T Consensus        30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~   70 (327)
T 2yfx_A           30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPE   70 (327)
T ss_dssp             GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCS
T ss_pred             hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecc
Confidence            4566778899999999999985      3577999999864

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=94.20  E-value=0.021  Score=58.74  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=29.9

Q ss_pred             hcccccceEeecCCCCcEEEEEe------CCCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~  772 (775)
                      .++|.-.+.||+|+||.||+|..      .+|+.||||++..
T Consensus        44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~   85 (344)
T 1rjb_A           44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKE   85 (344)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC
T ss_pred             HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccc
Confidence            46677788999999999999996      2466899999864

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=94.20  E-value=0.02  Score=58.21  Aligned_cols=36  Identities=33%  Similarity=0.479  Sum_probs=25.4

Q ss_pred             hcccccceEeecCCCCcEEEEEeCCC----CEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQSE----DLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~~g----~~vAVK~l~~  772 (775)
                      .++|.-.+.||+|+||.||+|.....    ..||||++..
T Consensus        22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~   61 (323)
T 3qup_A           22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKA   61 (323)
T ss_dssp             ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC--
T ss_pred             hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecc
Confidence            45677788999999999999998533    2799999864

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=94.19  E-value=0.021  Score=58.16  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=28.9

Q ss_pred             ccccceEeecCCCCcEEEEEe-----CCCCEEEEEEccCC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKL-----QSEDLIAVKKFNSQ  773 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l-----~~g~~vAVK~l~~~  773 (775)
                      +|.-...||+|+||.||+|++     .+|+.||||++...
T Consensus        24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~   63 (327)
T 3lxl_A           24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS   63 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC
T ss_pred             hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC
Confidence            455667899999999999995     46889999998643

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=94.14  E-value=0.024  Score=57.38  Aligned_cols=34  Identities=12%  Similarity=0.093  Sum_probs=27.4

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~  771 (775)
                      ++|.....||+|+||.||++.- .+|+.||||++.
T Consensus        29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~   63 (317)
T 2buj_A           29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRIL   63 (317)
T ss_dssp             EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEE
T ss_pred             eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEe
Confidence            4566778899999999999997 589999999874

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=94.13  E-value=0.023  Score=62.73  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      ++|.-.+.||+|+||.||+|.- .+|+.||||++..
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~  192 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMT  192 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEec
Confidence            4566667899999999999987 4799999999853

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=94.11  E-value=0.023  Score=57.46  Aligned_cols=37  Identities=24%  Similarity=0.288  Sum_probs=27.5

Q ss_pred             HhcccccceEeecCCCCcEEEEEeC----CCCEEEEEEccC
Q 043943          736 ATNDFDEEYCIGKGAQGSLYKAKLQ----SEDLIAVKKFNS  772 (775)
Q Consensus       736 aT~~f~~~~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~  772 (775)
                      ..+.|.-..+||+|+||.||+|...    .|+.||||++..
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~   72 (313)
T 3brb_A           32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKL   72 (313)
T ss_dssp             CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC--
T ss_pred             CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEec
Confidence            3456777788999999999999874    244899999864

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=94.07  E-value=0.028  Score=56.88  Aligned_cols=36  Identities=31%  Similarity=0.495  Sum_probs=25.9

Q ss_pred             hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      .+.|.....||+|+||.||+|... +|+.||||++..
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~   64 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPV   64 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEET
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCc
Confidence            456777789999999999999985 589999999864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=94.05  E-value=0.023  Score=61.14  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=20.9

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      +.|.-.++||+|+||+||+|.-. +|+.||||++..
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~   88 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILR   88 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECS
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEech
Confidence            45666788999999999999864 789999999854

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=94.05  E-value=0.021  Score=59.95  Aligned_cols=34  Identities=32%  Similarity=0.528  Sum_probs=28.8

Q ss_pred             ccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      .|...++||+|+||+||+|...++..||||++..
T Consensus        41 ~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~   74 (394)
T 4e7w_A           41 AYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQ   74 (394)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTEEEEEEEEEC
T ss_pred             eEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEec
Confidence            3556688999999999999998777799999854

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=94.00  E-value=0.024  Score=58.67  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=30.9

Q ss_pred             hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      .++|...+.||+|+||.||+|.-. +|+.||||++..
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~   64 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINT   64 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEET
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEc
Confidence            456777889999999999999874 689999999854

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=93.99  E-value=0.025  Score=63.85  Aligned_cols=35  Identities=29%  Similarity=0.492  Sum_probs=30.4

Q ss_pred             hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .++|.-.++||+|+||.||+|... +|+.||||+++
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~  375 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILK  375 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEE
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEe
Confidence            356878889999999999999975 68899999985

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=93.96  E-value=0.025  Score=60.30  Aligned_cols=35  Identities=31%  Similarity=0.487  Sum_probs=29.7

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++|.-.++||+|+||.||+|.-. +|+.||||++..
T Consensus        26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~   61 (432)
T 3n9x_A           26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNR   61 (432)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred             CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCc
Confidence            45667788999999999999874 688999999864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=93.92  E-value=0.031  Score=56.96  Aligned_cols=29  Identities=14%  Similarity=0.149  Sum_probs=25.8

Q ss_pred             eEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          744 YCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++||+|+||.||+|... +|+.||||++..
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~   64 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKK   64 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEES
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEeh
Confidence            77999999999999875 689999999853

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=93.91  E-value=0.026  Score=58.17  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=28.4

Q ss_pred             ccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .|.-.+.||+|+||+||+|.-. +|+.||||++.
T Consensus        25 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~   58 (351)
T 3c0i_A           25 VYELCEVIGKGPFSVVRRCINRETGQQFAVKIVD   58 (351)
T ss_dssp             HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             ceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEE
Confidence            4666788999999999999874 78999999874

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=93.89  E-value=0.028  Score=58.26  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      .+.|....+||+|+||.||+|.-. +|+.||||++..
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~   62 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISP   62 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecc
Confidence            345677788999999999999864 788999999864

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=93.86  E-value=0.034  Score=56.07  Aligned_cols=35  Identities=23%  Similarity=0.494  Sum_probs=30.1

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++|.-..+||+|+||.||+|... +|+.||||++..
T Consensus        34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~   69 (309)
T 2h34_A           34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSE   69 (309)
T ss_dssp             CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGG
T ss_pred             ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCc
Confidence            55777788999999999999975 788999999853

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=93.85  E-value=0.031  Score=62.39  Aligned_cols=29  Identities=21%  Similarity=0.277  Sum_probs=24.9

Q ss_pred             EeecCCCCcEEEEEeC---CCCEEEEEEccCC
Q 043943          745 CIGKGAQGSLYKAKLQ---SEDLIAVKKFNSQ  773 (775)
Q Consensus       745 ~iG~Gg~G~VYkg~l~---~g~~vAVK~l~~~  773 (775)
                      .||+|+||.||+|...   +|..||||+++..
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~  374 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG  374 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCC
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCC
Confidence            6999999999999884   5678999999753

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=93.76  E-value=0.033  Score=59.90  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=29.5

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      +.|...++||+|+||+||+|.- .+|+.||||++..
T Consensus        62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~   97 (464)
T 3ttj_A           62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSR   97 (464)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEES
T ss_pred             CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECc
Confidence            4566778899999999999975 4689999999853

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=93.61  E-value=0.034  Score=57.82  Aligned_cols=35  Identities=31%  Similarity=0.377  Sum_probs=29.5

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++|.....||+|+||.||+|.-. +|+.||||++..
T Consensus        25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~   60 (371)
T 2xrw_A           25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR   60 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred             hheeEeeeeEecCCEEEEEEEECCCCceEEEEEecc
Confidence            45667788999999999999864 689999999854

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=93.58  E-value=0.029  Score=62.83  Aligned_cols=29  Identities=28%  Similarity=0.349  Sum_probs=24.7

Q ss_pred             eEeecCCCCcEEEEEeC---CCCEEEEEEccC
Q 043943          744 YCIGKGAQGSLYKAKLQ---SEDLIAVKKFNS  772 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~---~g~~vAVK~l~~  772 (775)
                      ++||+|+||.||+|.+.   .|+.||||+++.
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~  406 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKN  406 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECG
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEecc
Confidence            57999999999999763   467899999864

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=93.54  E-value=0.043  Score=57.03  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=25.7

Q ss_pred             cccceEeecCCCCcEEEEEeC--CC--CEEEEEEccC
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQ--SE--DLIAVKKFNS  772 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~--~g--~~vAVK~l~~  772 (775)
                      |.-.++||+|+||+||+|...  ++  ..||||++..
T Consensus        91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~  127 (373)
T 3c1x_A           91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR  127 (373)
T ss_dssp             EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCS
T ss_pred             eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCC
Confidence            334578999999999999984  32  3689999864

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=93.46  E-value=0.039  Score=58.03  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=25.5

Q ss_pred             eEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          744 YCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       744 ~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      ++||+|+||+||+|.-. +|+.||||++..
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~   97 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD   97 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCc
Confidence            67999999999999874 689999999853

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=93.43  E-value=0.027  Score=57.85  Aligned_cols=35  Identities=26%  Similarity=0.191  Sum_probs=23.6

Q ss_pred             cccccceEeecCCCCcEEEEEeC----CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ----SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~  772 (775)
                      ++|.-.+.||+|+||.||+|...    ++..||||+...
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~   75 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQ   75 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEEC
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeec
Confidence            45666788999999999999985    578999999864

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=93.40  E-value=0.044  Score=57.27  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=29.9

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      +.|...+.||+|+||.||+|.-. +|+.||||.+..
T Consensus        51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~   86 (387)
T 1kob_A           51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINT   86 (387)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecc
Confidence            45677788999999999999875 689999999854

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=93.35  E-value=0.042  Score=54.75  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=26.8

Q ss_pred             cccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      |.-...||+|+||.||+|... ++..||||++..
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~   61 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQD   61 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEG
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecc
Confidence            334467999999999999874 678999999753

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=92.98  E-value=0.05  Score=54.44  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=25.8

Q ss_pred             ccccceEeecCCCCcEEEEEeCCC----CEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQSE----DLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~~g----~~vAVK~l~~  772 (775)
                      .|.-..+||+|+||+||+|...+.    ..||||++..
T Consensus        26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~   63 (298)
T 3f66_A           26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR   63 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETT
T ss_pred             ehhhcceeeecCCceEEEEEEecCCCceeEEEEEeccc
Confidence            355557899999999999997432    2689999864

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=92.89  E-value=0.054  Score=58.96  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=28.3

Q ss_pred             hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      .+.|...++||+|+||+||+|.-. +|+.||||++..
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~   71 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKK   71 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEh
Confidence            455777789999999999999975 678999999853

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=92.82  E-value=0.052  Score=56.85  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=29.5

Q ss_pred             cccccceEeecC--CCCcEEEEEeC-CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKG--AQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~G--g~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      +.|.-..+||+|  +||+||+|.-. +|+.||||++..
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~   62 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINL   62 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEG
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecc
Confidence            345566889999  99999999985 799999999853

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=92.79  E-value=0.048  Score=59.03  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=28.8

Q ss_pred             ccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      .|...++||+|+||.||+|.-. +|+.||||++.
T Consensus        27 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~   60 (484)
T 3nyv_A           27 RYKGQRVLGKGSFGEVILCKDKITGQECAVKVIS   60 (484)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred             ceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEE
Confidence            4666788999999999999985 78999999984

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=92.75  E-value=0.048  Score=61.88  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             cccccceEeecCCCCcEEEEEeC--CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ--SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~--~g~~vAVK~l~~  772 (775)
                      +.|.-..+||+||||.||+|...  +|+.||||++..
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~  116 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVH  116 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCS
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCc
Confidence            45667788999999999999975  689999999854

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=92.59  E-value=0.057  Score=55.15  Aligned_cols=34  Identities=15%  Similarity=0.241  Sum_probs=28.8

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~  771 (775)
                      +.|...++||+|+||.||++... +|+.||||.+.
T Consensus        41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~   75 (335)
T 2owb_A           41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVP   75 (335)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEec
Confidence            45666788999999999999985 57899999875

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=92.11  E-value=0.072  Score=57.79  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=26.2

Q ss_pred             ccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~  772 (775)
                      .|...++||+|+||+||+|.-. +|+.||||++..
T Consensus        38 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~   72 (494)
T 3lij_A           38 MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRK   72 (494)
T ss_dssp             HEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC
T ss_pred             CeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEec
Confidence            4666788999999999999975 789999999853

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=91.60  E-value=0.1  Score=52.72  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=26.9

Q ss_pred             cccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~  772 (775)
                      ++|....+||+|+||.||+|...+  .||||++..
T Consensus        33 ~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~   65 (319)
T 2y4i_B           33 EQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDI   65 (319)
T ss_dssp             SCEECCCBCCCSSSSEEEEEEESS--SEEEEECCC
T ss_pred             HHeEEeeEeccCCceEEEEEEEcC--eEEEEEeec
Confidence            456667889999999999999843  499999863

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=91.57  E-value=0.13  Score=57.95  Aligned_cols=35  Identities=20%  Similarity=0.388  Sum_probs=28.2

Q ss_pred             cccccceEeecCCCCcEEEEEeC----CCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ----SEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~  772 (775)
                      +.|.-.+.||+|+||.||+|...    .+..||||++..
T Consensus       390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~  428 (656)
T 2j0j_A          390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN  428 (656)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSS
T ss_pred             ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecc
Confidence            44666688999999999999984    245799999864

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=91.55  E-value=0.084  Score=53.62  Aligned_cols=35  Identities=29%  Similarity=0.462  Sum_probs=28.0

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCCE--EEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDL--IAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~--vAVK~l~~  772 (775)
                      ++|.-...||+|+||.||+|... +|..  ||||++..
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~   62 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKE   62 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeecc
Confidence            45667788999999999999974 5664  59999864

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=88.54  E-value=0.21  Score=54.65  Aligned_cols=29  Identities=24%  Similarity=0.284  Sum_probs=18.6

Q ss_pred             cceEeecCCCCcEEEEEeCCCCEEEEEEcc
Q 043943          742 EEYCIGKGAQGSLYKAKLQSEDLIAVKKFN  771 (775)
Q Consensus       742 ~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~  771 (775)
                      ..++||+|+||.||||.. .|+.||+|+..
T Consensus       340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~  368 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSY-LDFDVIIKERV  368 (540)
T ss_dssp             --------CCEEEEEEEC-SSCEEEEEEEC
T ss_pred             CCCEEeeCCCEEEEEEEE-CCCeEEEEEEe
Confidence            456899999999999976 78999999864

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=83.67  E-value=0.5  Score=46.77  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=18.5

Q ss_pred             ccccceEeecCCCCcEEEEEeC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQ  760 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~  760 (775)
                      .|.-..+||+|+||.||+|+..
T Consensus        25 ~y~~~~~lG~G~~g~Vy~~~~~   46 (289)
T 3og7_A           25 QITVGQRIGSGSFGTVYKGKWH   46 (289)
T ss_dssp             SCEEEEEEEECSSEEEEEEESS
T ss_pred             ceeeeeEecCCCCeEEEEEEEc
Confidence            4566678999999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	775
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-14
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-09
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	9e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	9e-04
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	0.003
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	0.004
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 96.4 bits (238), Expect = 2e-22
 Identities = 78/311 (25%), Positives = 131/311 (42%), Gaps = 13/311 (4%)

Query: 11  EEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHD---ERVVGINLTT 67
           ++ +ALL+ K  L   + + L SW       T      W G+ C+ D    RV  ++L+ 
Sbjct: 6   QDKQALLQIKKDL--GNPTTLSSWL----PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG 59

Query: 68  TSLNGTLD-EFSFSSFPDLLFLNLFNNE-LFGIIPPQISQLFKLQYLDLSANKLSGKIPP 125
            +L        S ++ P L FL +     L G IPP I++L +L YL ++   +SG IP 
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

Query: 126 EIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD 185
            + Q+  L  L    N L+G++P S+ +L     ++   N +SG IP   G+   L T  
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPS 245
                 +           NL      + ++     S L      +       +       
Sbjct: 180 TISRNRLTGKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 246 SIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILY 305
            +G  +NL  L L +N + G++P+ +  L+ L +L++S N L G IP   GN     +  
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297

Query: 306 LYSNQLSGSIP 316
             +N+     P
Sbjct: 298 YANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.0 bits (193), Expect = 2e-16
 Identities = 62/260 (23%), Positives = 96/260 (36%), Gaps = 5/260 (1%)

Query: 368 GNLVELVSLLLGFNYFRG--PIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFL 425
                + +L L         PIP +  NL  L  + +   N         +     L +L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 426 DLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP 485
            ++H N  G I     +   L TLDFS N ++G++PP I +   L  +    N I G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 486 MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYL 545
              G  S L   +           P       L  +DLS N L        G+    +  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS--DKNTQ 224

Query: 546 NLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFI 605
            +   + S         L   L+ LDL  N + G +P  +  ++ L  LN+S+N L G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 606 PNCFEDMHGLSSIDISYNRL 625
           P    ++        + N+ 
Sbjct: 285 PQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNS-LS 168
             LDL  N++ G +P  + QL FL  L++  N L G IP   GNL +  + +  NN  L 
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLC 305

Query: 169 GYIPP 173
           G   P
Sbjct: 306 GSPLP 310

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 97.0 bits (240), Expect = 4e-22
 Identities = 76/387 (19%), Positives = 137/387 (35%), Gaps = 36/387 (9%)

Query: 153 NLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFN 212
            L+++    L   +++  +     +L  ++TL       I S+   +  L NL  ++  N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSN 75

Query: 213 NSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG 272
           N L+   P  L  L  L ++ M+ N ++   P +        +LF         +     
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 273 ---------NLRSLSNLDLSINRLNGVIPSSIGNSNNLSIL----YLYSNQLSGSIPKEI 319
                     +  +S L    +       + + +   L+ L     L  +    S    +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 320 GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLG 379
             L  L  L  + N ++ + P  I    NL  L L  N+L       + +L  L  L L 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 380 FNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSD 439
            N      P     LT L  +++  N +S              +  +L  N    +  S 
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPL-----AGLTALTNLELNENQLEDISP 302

Query: 440 WGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLIL 499
                 L  L    NNI+   P  + + +KLQ L  ++N +       L  L+++N L  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 500 NKNQLFGSLPPEIGTLTELELLDLSEN 526
             NQ+    P  +  LT +  L L++ 
Sbjct: 359 GHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 95.1 bits (235), Expect = 2e-21
 Identities = 69/388 (17%), Positives = 136/388 (35%), Gaps = 37/388 (9%)

Query: 249 NVRNLRSLFLYSNELSGSIPK-EIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLY 307
            +       L    ++ ++ + ++  + +L    L I  ++G     +   NNL+ +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 308 SNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQA- 366
           +NQL+   P  + NL  L D+ ++ N +  + P +         L+  +      +    
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 367 -----------IGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAF 415
                      I ++  L  L        G    + K L NL  +     + +     + 
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 416 VGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNL 475
           +     L  L  ++N          G    L  L  + N +       + + + L  L+L
Sbjct: 193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 476 SSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGS 535
           ++N I    P  L  L+ L +L L  NQ+    P    T           N         
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL----ELNENQLEDISP 302

Query: 536 LGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLN 595
           + NL  + YL L  N  S   P     L  +L  L  + N +     S + N+ ++  L+
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 596 LSYNQLSGFIPNCFEDMHGLSSIDISYN 623
             +NQ+S   P    ++  ++ + ++  
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 94.3 bits (233), Expect = 3e-21
 Identities = 81/410 (19%), Positives = 146/410 (35%), Gaps = 42/410 (10%)

Query: 100 PPQISQLF------KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGN 153
              I+Q+F      +     L    ++  +      L  ++ L      +  SI   +  
Sbjct: 9   DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEY 64

Query: 154 LSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNN 213
           L+  + ++  NN L+   P  + NL  L  + ++ NQ+    P         +TL     
Sbjct: 65  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 214 SLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGN 273
           +                  N++  +      ++I ++  L  L        G+   ++  
Sbjct: 123 T------------DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP 170

Query: 274 LRSLSNLDLSINRLN-GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
           L +L+ L+      N     S +    NL  L   +NQ+S   P  I     L +L L+ 
Sbjct: 171 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNG 228

Query: 333 NNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFK 392
           N L      ++ +L NL  L L  N++S   P  +  L +L  L LG N      P    
Sbjct: 229 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---- 280

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452
            L  L  +   + N +     + +     L++L L  NN             +L  L F+
Sbjct: 281 -LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFA 337

Query: 453 VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKN 502
            N ++      + N + +  L+   N I    P  L  L+ + +L LN  
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.8 bits (229), Expect = 1e-20
 Identities = 63/373 (16%), Positives = 125/373 (33%), Gaps = 33/373 (8%)

Query: 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
            L       L    +   +  +  + + ++ L      +  SI   +  L  L  +  S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSN 75

Query: 333 NNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFK 392
           N LT + P  + NL  L  + +  N+++   P A    +  ++L         P+     
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 393 N------LTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDW------ 440
                     +  +       S                 +L+        S+        
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 441 GRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILN 500
            +   L +L  + N I+   P  I  +  L  L+L+ N +       L  L++L  L L 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 501 KNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQF 560
            NQ+    P  +  LT+L  L L  N++SN  P     L  +  L       +       
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISP 302

Query: 561 EKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDI 620
                 L+ L L  N +    P  + ++  L +L  + N++S    +   ++  ++ +  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 621 SYNRLQGPVPFSK 633
            +N++    P + 
Sbjct: 359 GHNQISDLTPLAN 371

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 91.6 bits (226), Expect = 2e-20
 Identities = 72/387 (18%), Positives = 126/387 (32%), Gaps = 36/387 (9%)

Query: 177 NLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236
            L       L    +  +V     +L  + TL      +       +  L  L+ +N S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75

Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN------LDLSINRLNGV 290
           N L+   P  + N+  L  + + +N+++   P       +          D+   +    
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 291 IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELS-------MNNLTGVIPSSI 343
           +     +SN +S +   S   S         +  L  L          +++      S +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 344 GNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMN 403
             L NL  L    N++S   P  I     L  L L  N  +        +LTNL  + + 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 404 QNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE 463
            N +S       +     L+ L L  N                      +N         
Sbjct: 250 NNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTN----LELNENQLEDISP 302

Query: 464 IGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDL 523
           I N   L  L L  N+I    P  +  L+ L +L    N++       +  LT +  L  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 524 SENRLSNAIPGSLGNLLKVHYLNLSNN 550
             N++S+  P  L NL ++  L L++ 
Sbjct: 359 GHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 3e-19
 Identities = 74/374 (19%), Positives = 129/374 (34%), Gaps = 51/374 (13%)

Query: 66  TTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPP 125
           T        D  S +    +  L      +  I    +  L  L  ++ S N+L+   P 
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP- 83

Query: 126 EIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD 185
            +  L+ L ++   +N     I       +   L    N          + NL  L    
Sbjct: 84  -LKNLTKLVDIL-MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTL--------------GKLKCLSN 231
            +++ +            +          L+                      KL  L +
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 232 LNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVI 291
           L  + N +S   P  I    NL  L L  N+L       + +L +L++LDL+ N+++ + 
Sbjct: 202 LIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 292 PSSIGNSNNLSILYLYSNQLSGSIP--------------------KEIGNLKCLFDLELS 331
           P  +     L+ L L +NQ+S   P                      I NLK L  L L 
Sbjct: 258 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 332 MNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNF 391
            NN++ + P  + +L  L+ L+   N++S     ++ NL  +  L  G N      P   
Sbjct: 316 FNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 369

Query: 392 KNLTNLVRVRMNQN 405
            NLT + ++ +N  
Sbjct: 370 ANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.0 bits (227), Expect = 6e-21
 Identities = 50/278 (17%), Positives = 96/278 (34%), Gaps = 24/278 (8%)

Query: 203 TNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNE 262
            +   L L NN ++         LK L  L +  N +S   P +   +  L  L+L  N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 263 LSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL 322
           L     K    L+ L   +  I ++   + + +     +  L     + SG        +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGM 149

Query: 323 KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNY 382
           K L  + ++  N+T +     G   +L  L+L  N+++     ++  L  L  L L FN 
Sbjct: 150 KKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 383 FRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGR 442
                  +  N  +L  + +N N L           +  +  + L +NN           
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNIS--------- 255

Query: 443 FPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHI 480
                    ++ +     P      +    ++L SN +
Sbjct: 256 ---------AIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.6 bits (226), Expect = 8e-21
 Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 13/268 (4%)

Query: 99  IPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS 158
           +P  +        LDL  NK++     +   L  L  L L +N ++   P +   L K  
Sbjct: 25  VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 159 LLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF 218
            L L  N L      +   L  L   +  + ++  SV F   N   +V L       SG 
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGI 141

Query: 219 IPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLS 278
                  +K LS + ++  +++  IP  +    +L  L L  N+++      +  L +L+
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 279 NLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV 338
            L LS N ++ V   S+ N+ +L  L+L +N+L   +P  + + K +  + L  NN++ +
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257

Query: 339 IPSS------IGNLRNLRLLYLYRNELS 360
             +            +   + L+ N + 
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.9 bits (219), Expect = 7e-20
 Identities = 54/266 (20%), Positives = 103/266 (38%), Gaps = 8/266 (3%)

Query: 146 SIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNL 205
            +P+ L   +   LL L NN ++        NL +L TL L  N++    P     L  L
Sbjct: 24  KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 206 VTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG 265
             L+L  N L          L+ L      +  +  ++ + +  +  +  L     + SG
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSG 140

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCL 325
                   ++ LS + ++   +  +     G   +L+ L+L  N+++      +  L  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 326 FDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRG 385
             L LS N+++ V   S+ N  +LR L+L  N+L   +P  + +   +  + L  N    
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

Query: 386 PIPKNFKNLTNLVR-VRMNQNNLSGN 410
               +F       +    +  +L  N
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.8 bits (216), Expect = 2e-19
 Identities = 56/290 (19%), Positives = 106/290 (36%), Gaps = 17/290 (5%)

Query: 339 IPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLV 398
           +P  +    +  LL L  N+++        NL  L +L+L  N      P  F  L  L 
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 399 RVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITG 458
           R+ +++N L   + E    T   L   +         + +   +   +  L  +    +G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSG 140

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTEL 518
                     KL  + ++  +I     +  G   SL +L L+ N++       +  L  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 519 ELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLE 578
             L LS N +S    GSL N   +  L+L+NN+         +   +Q   + L  N + 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ--VVYLHNNNIS 255

Query: 579 G------EIPSQICNMESLVKLNLSYNQLSGF--IPNCFEDMHGLSSIDI 620
                    P       S   ++L  N +  +   P+ F  ++  +++ +
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.0 bits (214), Expect = 3e-19
 Identities = 56/275 (20%), Positives = 99/275 (36%), Gaps = 34/275 (12%)

Query: 83  PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNC 142
           PD   L+L NN++  I       L  L  L L  NK+S   P     L  L  L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 143 L---------------------NGSIPQSLGNLSKQSLLSLYN--NSLSGYIPPVIGNLI 179
           L                               L++  ++ L       SG        + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239
            LS + ++   +        G   +L  LHL  N ++    ++L  L  L+ L +S N +
Sbjct: 151 KLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSS----- 294
           S     S+ N  +LR L L +N+L   +P  + + + +  + L  N ++ +  +      
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 295 -IGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDL 328
                 + S + L+SN +      +    +C++  
Sbjct: 267 YNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 3e-16
 Identities = 42/207 (20%), Positives = 76/207 (36%), Gaps = 5/207 (2%)

Query: 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNH 479
           P  + LDL +N        D+     L TL    N I+   P       KL+ L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 480 IGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNL 539
           +          L  L        ++  S+   +  +  +EL   +  + S    G+   +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQGM 149

Query: 540 LKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYN 599
            K+ Y+ +++   +         L     EL L  N +     + +  + +L KL LS+N
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLT----ELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 600 QLSGFIPNCFEDMHGLSSIDISYNRLQ 626
            +S        +   L  + ++ N+L 
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV 232

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 5e-14
 Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 9/209 (4%)

Query: 444 PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503
           P    LD   N IT     +  N   L  L L +N I    P     L  L +L L+KNQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 504 LFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSN--NEFSHKIPTQFE 561
           L   LP ++      + L + EN ++         L ++  + L     + S      F+
Sbjct: 91  L-KELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 562 KLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDIS 621
            ++ +LS + ++   +   IP  +    SL +L+L  N+++       + ++ L+ + +S
Sbjct: 148 GMK-KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 622 YNRLQGPVPFSKAFRDAPAEALQGNRGLC 650
           +N +      S A      E    N  L 
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLV 232

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 5e-12
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 10/189 (5%)

Query: 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQL 504
            L  +  S   +   +P ++       +L+L +N I      +   L +L+ LIL  N++
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 505 FGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ 564
               P     L +LE L LS+N+L             +  L +  NE +    + F  L 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSVFNGLN 124

Query: 565 LQLS-ELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623
             +  EL  +     G        M+ L  + ++   ++            L+ + +  N
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGN 181

Query: 624 RLQGPVPFS 632
           ++      S
Sbjct: 182 KITKVDAAS 190

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 12/165 (7%)

Query: 78  SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELS 137
           +F     L ++ + +  +  I          L  L L  NK++      +  L+ L++L 
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 138 LYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIG---- 193
           L  N ++     SL N      L L NN L   +P  + +   +  + L  N +      
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260

Query: 194 --SVPFFLGNLTNLVTLHLFNNSLSGF--IPSTLGKLKCLSNLNM 234
               P +     +   + LF+N +  +   PST   +   + + +
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (222), Expect = 2e-20
 Identities = 55/301 (18%), Positives = 95/301 (31%), Gaps = 33/301 (10%)

Query: 183 TLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA 242
           T       L  +VP  +        + L  N +S    ++    + L+ L +  N L+  
Sbjct: 15  TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 243 IPSSIGNVRNLRSLFLYSNELSGSI-PKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301
             ++   +  L  L L  N    S+ P     L  L  L L    L  + P        L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 302 SILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG 361
             LYL  N L         +L  L  L L  N ++ V   +   L +L  L L++N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPT 421
             P A  +L                           +       N    +    +     
Sbjct: 192 VHPHAFRDL-------------------------GRLMTLYLFANNLSALPTEALAPLRA 226

Query: 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG 481
           L +L L+ N +     +       L     S + +  S+P  +       +  L++N + 
Sbjct: 227 LQYLRLNDNPWVCDCRARPLW-AWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQ 282

Query: 482 G 482
           G
Sbjct: 283 G 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (221), Expect = 2e-20
 Identities = 54/276 (19%), Positives = 91/276 (32%), Gaps = 8/276 (2%)

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387
                  L   +P  I      + ++L+ N +S     +      L  L L  N      
Sbjct: 16  TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447
              F  L  L ++ ++ N    ++  A       L  L L            +     L 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
            L    N +         +   L  L L  N I          L SL++L+L++N++   
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 508 LPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQL 567
            P     L  L  L L  N LS     +L  L  + YL L++N +      +   L   L
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP--LWAWL 250

Query: 568 SELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSG 603
            +   S + +   +P ++   +      L+ N L G
Sbjct: 251 QKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (216), Expect = 9e-20
 Identities = 53/266 (19%), Positives = 97/266 (36%), Gaps = 7/266 (2%)

Query: 362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPT 421
           ++P  I    +   + L  N        +F+   NL  + ++ N L+   + AF G    
Sbjct: 25  AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG 481
                  +        + +    +L TL      +    P      + LQ L L  N + 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 482 GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLK 541
                    L +L  L L+ N++          L  L+ L L +NR+++  P +  +L +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 542 VHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQL 601
           +  L L  N  S  +PT+       L  L L+ N    +  +       L K   S +++
Sbjct: 203 LMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEV 260

Query: 602 SGFIPNCFEDMHGLSSIDISYNRLQG 627
              +P   + + G     ++ N LQG
Sbjct: 261 PCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (207), Expect = 2e-18
 Identities = 59/265 (22%), Positives = 102/265 (38%), Gaps = 7/265 (2%)

Query: 146 SIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNL 205
           ++P  +   S++  + L+ N +S           +L+ L L  N L          L  L
Sbjct: 25  AVPVGIPAASQR--IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 206 VTLHLFNNSLSGFI-PSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS 264
             L L +N+    + P+T   L  L  L++    L    P     +  L+ L+L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 265 GSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKC 324
                   +L +L++L L  NR++ V   +    ++L  L L+ N+++   P    +L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 325 LFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFR 384
           L  L L  NNL+ +   ++  LR L+ L L  N        A      L       +   
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVP 261

Query: 385 GPIPKNFKNLTNLVRVRMNQNNLSG 409
             +P+           R+  N+L G
Sbjct: 262 CSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 58/259 (22%), Positives = 90/259 (34%), Gaps = 11/259 (4%)

Query: 62  GINLTTTSLN------GTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLS 115
           GI   +  +         +   SF +  +L  L L +N L  I     + L  L+ LDLS
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 116 ANKLSGKIPP-EIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPV 174
            N     + P     L  L  L L    L    P     L+    L L +N+L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNM 234
             +L +L+ L L  N++          L +L  L L  N ++   P     L  L  L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 235 SMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSS 294
             N+LS     ++  +R L+ L L  N               L     S + +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQR 267

Query: 295 IGNSNNLSILYLYSNQLSG 313
           +       +  L +N L G
Sbjct: 268 L---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 3e-14
 Identities = 49/242 (20%), Positives = 82/242 (33%), Gaps = 4/242 (1%)

Query: 24  QIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFP 83
            + + S      L+ +      L             +  ++L+  +   ++D  +F    
Sbjct: 46  HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 84  DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCL 143
            L  L+L    L  + P     L  LQYL L  N L          L  L+ L L+ N +
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165

Query: 144 NGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLT 203
           +    ++   L     L L+ N ++   P    +L  L TL L  N L       L  L 
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 204 NLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL 263
            L  L L +N       +       L     S + +  ++P  +          L +N+L
Sbjct: 226 ALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDL 281

Query: 264 SG 265
            G
Sbjct: 282 QG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 4e-11
 Identities = 40/211 (18%), Positives = 62/211 (29%), Gaps = 8/211 (3%)

Query: 294 SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLY 353
            +    +   +      L+ ++P ++        L LS N L     +++     L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 354 LYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISE 413
           L R E   +  Q  G L  L +L L  N  +             V         S  +  
Sbjct: 62  LDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPL 117

Query: 414 AFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVL 473
             +     L  L L  N             P+L  L  + NN+T      +     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 474 NLSSNHIGGKIPMELGRLSSLNKLILNKNQL 504
            L  N +   IP        L    L+ N  
Sbjct: 178 LLQENSL-YTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 9e-10
 Identities = 52/212 (24%), Positives = 79/212 (37%), Gaps = 11/212 (5%)

Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNM 234
           +  + S   ++     L  ++P  L    +   LHL  N L  F  +TL     L+ L  
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL-- 60

Query: 235 SMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK--EIGNLRSLSNLDLSINRLNGVIP 292
              +L  A  + +     L  L       +           L +L+ LD+S NRL  +  
Sbjct: 61  ---NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 293 SSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLL 352
            ++     L  LYL  N+L    P  +     L  L L+ NNLT +    +  L NL  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 353 YLYRNELSGSIPQAIGNLVELVSLLLGFNYFR 384
            L  N L  +IP+       L    L  N + 
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 45/180 (25%), Positives = 62/180 (34%), Gaps = 4/180 (2%)

Query: 82  FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSN 141
             D   L+L  N L+      +    +L  L+L   +         G L  L  L L  N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--LTKLQVDGTLPVLGTLDLSHN 87

Query: 142 CLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGN 201
            L          L   ++L +  N L+      +  L  L  L L  N+L    P  L  
Sbjct: 88  QLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 202 LTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSN 261
              L  L L NN+L+      L  L+ L  L +  N L   IP        L   FL+ N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 487 ELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLN 546
           E+ +++S  ++  +K  L  +LPP++    +  +L LSEN L      +L    ++  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 547 LSNNEFSH 554
           L   E + 
Sbjct: 62  LDRAELTK 69

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 43/209 (20%), Positives = 69/209 (33%), Gaps = 33/209 (15%)

Query: 391 FKNLTNLVRVRMNQNNLS---GNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447
              + + + V  ++ NL+    ++           + L LS N  +    +    + +L 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP-------KDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 448 TLDFS---------------------VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPM 486
            L+                        +N   S+P        L VL++S N +      
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 487 ELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLN 546
            L  L  L +L L  N+L    P  +    +LE L L+ N L+    G L  L  +  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 547 LSNNEFSHKIPTQFEKLQLQLSELDLSQN 575
           L  N     IP  F      L    L  N
Sbjct: 179 LQENSLYT-IPKGFFGSH-LLPFAFLHGN 205

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 55/323 (17%), Positives = 99/323 (30%), Gaps = 25/323 (7%)

Query: 229 LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288
              L ++   LS ++P    +   L SL    N L+  +P+   +L+SL   + ++  L+
Sbjct: 40  AHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNN------LTGVIPSS 342
            + P       + + L       + S  K I            +                
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 343 IGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRM 402
           +  L+NL  L     + +         L     +         P  +N   LT +     
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 403 NQNNLSGNISEAFVGTYPTLSFLDL----SHNNFHGQISSDWGRFPQLGTLDFSVNNITG 458
               L                  DL        F     + +    +L    + +N  + 
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTEL 518
            I         L+ LN+S+N +  ++P    RL  L     + N L   +P     L + 
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKL-IELPALPPRLERLI---ASFNHL-AEVPELPQNLKQ- 328

Query: 519 ELLDLSENRLSN--AIPGSLGNL 539
             L +  N L     IP S+ +L
Sbjct: 329 --LHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.8 bits (143), Expect = 4e-10
 Identities = 51/327 (15%), Positives = 92/327 (28%), Gaps = 25/327 (7%)

Query: 251 RNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGN--SNNLSILYLYS 308
           R    L L +  LS S+P+   +L S   L  S N L   +P    +  S  +    L +
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 309 NQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIG 368
                 + + +G      +    + N + +    + N    +L  L  +    +      
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 369 NLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLS 428
             +  +  L              K     + +       +       +   P L+ +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 429 HNNFHGQISSDWGRFPQLGTLD--------FSVNNITGSIPPEIGNSSKLQVLNLSSNHI 480
           +N                   +                         S+L       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 481 GGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLL 540
             +I        SL +L ++ N+L   LP     L     L  S N L+  +P    NL 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKL-IELPALPPRLER---LIASFNHLAE-VPELPQNL- 326

Query: 541 KVHYLNLSNNEFSH--KIPTQFEKLQL 565
               L++  N       IP   E L++
Sbjct: 327 --KQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 62/327 (18%), Positives = 99/327 (30%), Gaps = 25/327 (7%)

Query: 299 NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNE 358
                L L +  LS S+P+   +L+    L  S N+LT  +P    +L++L +       
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 359 LSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFK--NLTNLVRVRMNQNNLSGNISEAFV 416
           LS   P      V    L            K     N +      +  +          +
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 417 GTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLS 476
              P L  L      +    S        L        N      PE+ N   L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 477 SNHIGGKIPMELGRLSSLNKLILNKN--------QLFGSLPPEIGTLTELELLDLSENRL 528
           +N +     +     +   +     +                    L+EL       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 529 SNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNM 588
           SN I         +  LN+SNN+    +P    +L+     L  S N L  E+P    N 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLE----RLIASFNHLA-EVPELPQN- 325

Query: 589 ESLVKLNLSYNQLSGFIPNCFEDMHGL 615
             L +L++ YN L    P+  E +  L
Sbjct: 326 --LKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIP 292
              +N  S  I S      +L  L + +N+L   +P     L     L  S N L   +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAE-VP 320

Query: 293 SSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNN 334
                  NL  L++  N L    P    +++     +L MN+
Sbjct: 321 ELPQ---NLKQLHVEYNPLR-EFPDIPESVE-----DLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 49/327 (14%), Positives = 93/327 (28%), Gaps = 26/327 (7%)

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKC-------LSNL 232
               L+L+   L  S+P    +L    +L    NSL+  +P     LK        L  L
Sbjct: 39  QAHELELNNLGL-SSLPELPPHLE---SLVASCNSLTE-LPELPQSLKSLLVDNNNLKAL 93

Query: 233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIP 292
           +     L     S+    +          ++       +  L  L               
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL-EFIAAGNNQL 152

Query: 293 SSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLL 352
             +    NL  L       +         L     +  +          ++  L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 353 YLYRNELSGSIPQAIGNLVELVS----LLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLS 408
                 L    P      V          L  +     + +N  +  + +   +   N S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 409 GNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSS 468
            N   +     P+L  L++S+N    ++       P+L  L  S N++   +P    N  
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNN----KLIELPALPPRLERLIASFNHLA-EVPELPQN-- 325

Query: 469 KLQVLNLSSNHIGGKIPMELGRLSSLN 495
            L+ L++  N +  + P     +  L 
Sbjct: 326 -LKQLHVEYNPL-REFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 89  NLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIP 148
             + N     I         L+ L++S NKL  ++P    +   L  L    N L   +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP 320

Query: 149 QSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL 181
           +   NL +   L +  N L    P +  ++  L
Sbjct: 321 ELPQNLKQ---LHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 209 HLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIP 268
             + N+ S  I S       L  LN+S N L   +P+       L  L    N L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVP 320

Query: 269 KEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSI 303
           +   NL+    L +  N L    P    +  +L +
Sbjct: 321 ELPQNLKQ---LHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 138 LYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPF 197
            Y N  +  I            L++ NN L   +P +   L     L  S N L   VP 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPE 321

Query: 198 FLGNLTNLVTLHLFNNSLSGF--IPSTLGKLK 227
              NL     LH+  N L  F  IP ++  L+
Sbjct: 322 LPQNLK---QLHVEYNPLREFPDIPESVEDLR 350

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 39/276 (14%), Positives = 81/276 (29%), Gaps = 38/276 (13%)

Query: 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSG 169
           Q LDL+   L   +   +     ++      + ++  + +       Q +    +     
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 170 YIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL 229
            +  ++     L  L L   +L   +   L   +NLV L+L   S             C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 230 SNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG------------------------ 265
               ++++         +       S  +    LSG                        
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 266 ---------SIPKEIGNLRSLSNLDLS-INRLNGVIPSSIGNSNNLSILYLYSNQLSGSI 315
                       +E   L  L +L LS    +       +G    L  L ++     G++
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 316 PKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRL 351
                 L     L+++ ++ T +   +IGN +N  +
Sbjct: 242 QLLKEALP---HLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 35/269 (13%), Positives = 76/269 (28%), Gaps = 39/269 (14%)

Query: 280 LDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV- 338
           LDL+   L+  +   +  S  +       + +   + +     + +  ++LS + +    
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 339 IPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGF--NYFRGPIPKNFKNLTN 396
           +   +     L+ L L    LS  I   +     LV L L     +    +     + + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 397 LVRVRMN------------------------------QNNLSGNISEAFVGTYPTLSFLD 426
           L  + ++                              +N    ++S         +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 427 LSHNNFHGQISSDWGRFPQLGTLDFS-VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP 485
                       ++ +   L  L  S   +I      E+G    L+ L +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 486 MELGRLSSLNKLILNKNQLFGSLPPEIGT 514
           +    L  L    +N +       P IG 
Sbjct: 243 LLKEALPHLQ---INCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 425 LDLSHNNFHGQISSDWGRFPQLGTLDFSV-NNITGSIPPEIGNSSKLQVLNLSSNHIGGK 483
           LDL+  N H  ++   GR    G + F    +       E  +  ++Q ++LS++ I   
Sbjct: 5   LDLTGKNLHPDVT---GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 484 -IPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLD 522
            +   L + S L  L L   +L   +   +   + L  L+
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 1/107 (0%)

Query: 508 LPPEIGTLTELELLDLSENRLS-NAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQ 566
            P   G L    ++     R   +       +  +V +++LSN+               +
Sbjct: 13  HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 72

Query: 567 LSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMH 613
           L  L L    L   I + +    +LV+LNLS                
Sbjct: 73  LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.4 bits (129), Expect = 5e-09
 Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 8/190 (4%)

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTL-GKLKCLSNLNMSMNH 238
             +T+D +   L   +P  +    +   L L +N L       L G+L  L  L +  N 
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 239 LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNS 298
           L+G  P++     +++ L L  N++     K    L  L  L+L  N+++ V+P S  + 
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 299 NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNE 358
           N+L+ L L SN  + +        + L    L+        PS    +R++++  L  +E
Sbjct: 126 NSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSE 181

Query: 359 LSGSIPQAIG 368
              S   + G
Sbjct: 182 FKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 9/180 (5%)

Query: 254 RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSI-GNSNNLSILYLYSNQLS 312
            ++      L   IP++I      + L L+ N L  +    + G   +L  L L  NQL+
Sbjct: 11  TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 313 GSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVE 372
           G  P        + +L+L  N +  +       L  L+ L LY N++S  +P +  +L  
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 373 LVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF 432
           L S L   +               L +  +N                  +   DL H+ F
Sbjct: 128 LTS-LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD----VQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 34/176 (19%), Positives = 55/176 (31%), Gaps = 6/176 (3%)

Query: 362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPT 421
            IP+ I        LLL  N                +     + N    I          
Sbjct: 22  EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG 481
           +  L L  N      +  +    QL TL+   N I+  +P    + + L  LNL+SN   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 482 GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLG 537
               +       L K  LN        P +   + ++++ DL  +    +   S G
Sbjct: 140 CNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 7/175 (4%)

Query: 99  IPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQSLGNLSKQ 157
           IP  I        L L+ N+L       + G+L  L +L L  N L G  P +    S  
Sbjct: 23  IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 158 SLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSG 217
             L L  N +      +   L  L TL+L  NQ+   +P    +L +L +L+L +N  + 
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140

Query: 218 FIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG 272
                    + L   +++        PS    VR+++   L  +E   S     G
Sbjct: 141 NCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 87  FLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGS 146
            L L  N++  I       L +L+ L+L  N++S  +P     L+ L+ L+L SN  N +
Sbjct: 82  ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141

Query: 147 IPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLI 192
              +          SL   +     P     +  +   DL  ++  
Sbjct: 142 CHLA-WFAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFK 183

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 3e-08
 Identities = 38/231 (16%), Positives = 69/231 (29%), Gaps = 9/231 (3%)

Query: 331 SMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKN 390
             + +T  IPS +   RN   L     +L      A     +L  + +  N     I  +
Sbjct: 16  QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 72

Query: 391 FKNLTNLVRVRMN---QNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447
             +    +         N L  N              +  +       +         L 
Sbjct: 73  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
            +  ++N  T      +G S +  +L L+ N I                 + + N L   
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192

Query: 508 LPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPT 558
                   +   +LD+S  R+ +     L NL K+   +  N +   K+PT
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 4e-07
 Identities = 36/238 (15%), Positives = 65/238 (27%), Gaps = 9/238 (3%)

Query: 276 SLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNL 335
           S        +++   IPS +    N   L     +L             L  +E+S N++
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 336 TGVIPSSIGNLRNLRLLYLY---RNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFK 392
             VI + + +              N L  +             L+        P      
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452
           +L  ++    +  N+      +FVG       L L+ N      +  +            
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 453 VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPP 510
            NN+          +S   +L++S   I       L  L  L        +    LP 
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 27/225 (12%), Positives = 54/225 (24%), Gaps = 31/225 (13%)

Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL--SNLNMSMN 237
           S        +++   +P  L    N + L      L             L    ++ +  
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGN 297
                        +        +N L    P+   NL +L  L +S   +  +      +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 298 SNNLSI--------------------------LYLYSNQLSGSIPKEIGNLKCLFDLELS 331
           S    +                          L+L  N +           +        
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 332 MNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSL 376
            NNL  +            +L + R  +       + NL +L + 
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 25/216 (11%), Positives = 56/216 (25%), Gaps = 6/216 (2%)

Query: 99  IPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS 158
           IP  + +      L     KL             L ++ +  N +   I   + +   + 
Sbjct: 23  IPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 159 LLSL----YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNS 214
                    N              +    +  +  + +  V         L+ +    N 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 215 LSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNL 274
            +    S +G       L ++ N +      +    +        +N L           
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 275 RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQ 310
                LD+S  R++ +    + N   L     Y+ +
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 10/239 (4%)

Query: 348 NLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNL 407
           + R+     ++++  IP  +      + L       R      F    +L ++ ++QN++
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 408 SGNISEAFVGTYPTLSF-LDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGN 466
              I        P L        NN        +   P L  L  S   I         +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 467 SSKLQVLNLSS--NHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLS 524
           S +  +L++    N    +    +G       L LNKN +              EL    
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 525 ENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPS 583
            N L                L++S            E L+ +L            ++P+
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK-KLRARSTYNL---KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 29/241 (12%), Positives = 57/241 (23%), Gaps = 19/241 (7%)

Query: 47  CAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQL 106
           C+     C                   + E       + + L     +L  I     S  
Sbjct: 8   CSNRVFLCQ---------------ESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGF 52

Query: 107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNS 166
             L+ +++S N +   I  ++                N          +  +L  L  ++
Sbjct: 53  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112

Query: 167 LSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVT----LHLFNNSLSGFIPST 222
                 P +  + SL  + L +   I        +   L      L L  N +       
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA 172

Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDL 282
               +         N+L                L +    +       + NL+ L     
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

Query: 283 S 283
            
Sbjct: 233 Y 233

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 8e-08
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 467 SSKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILNKNQL----FGSLPPEIGTLTELELL 521
           S  +Q L++    +      EL   L     + L+   L       +   +     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 522 DLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSH 554
           +L  N L +     +   L+     +      +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 8e-07
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 25/111 (22%)

Query: 466 NSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSE 525
             S L+VL L+   +       L                       +     L  LDLS 
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAAT--------------------LLANHSLRELDLSN 406

Query: 526 NRLSNAIPGSLGNLLK-----VHYLNLSNNEFSHKIPTQFEKLQLQLSELD 571
           N L +A    L   ++     +  L L +  +S ++  + + L+     L 
Sbjct: 407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 21/148 (14%), Positives = 43/148 (29%), Gaps = 5/148 (3%)

Query: 298 SNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGV----IPSSIGNLRNLRLL 352
           S ++  L +   +LS +   E+   L+    + L    LT      I S++     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 353 YLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNIS 412
            L  NEL       +   ++  S  +     +               +R        ++S
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 413 EAFVGTYPTLSFLDLSHNNFHGQISSDW 440
           +  +G        +   +          
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQL 148

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 413 EAFVGTYPTLSFLDLSHNNFHGQ----ISSDWGRFPQLGTLDFSVNNITGSIPPEIG--- 465
           +        L  L L+  +        +++       L  LD S N +  +   ++    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 466 --NSSKLQVLNLSSNHIGGKIPMELGRLSSLN 495
                 L+ L L   +   ++   L  L    
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 4e-06
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 6/102 (5%)

Query: 517 ELELLDLSENRLSNA-IPGSLGNLLKVHYLNLSNNEFSHK----IPTQFEKLQLQLSELD 571
           +++ LD+    LS+A     L  L +   + L +   +      I +        L+EL+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELN 61

Query: 572 LSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMH 613
           L  N L       +          +    L            
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 5e-06
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 252 NLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGV----IPSSIGNSNNLSILYL 306
           +++SL +   ELS +   E+   L+    + L    L       I S++  +  L+ L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 307 YSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337
            SN+L       +         ++   +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 6e-06
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 179 ISLSTLDLSLNQLIGS-VPFFLGNLTNLVTLHLFNNSLSG----FIPSTLGKLKCLSNLN 233
           + + +LD+   +L  +     L  L     + L +  L+      I S L     L+ LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG 265
           +  N L       +       S  +    L  
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 6e-06
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 204 NLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSG----AIPSSIGNVRNLRSLFL 258
           ++ +L +    LS       L  L+    + +    L+      I S++     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 259 YSNELSGSIPKEIGNLRSLSNLDLSINRLNG 289
            SNEL       +       +  +    L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 7e-06
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 249 NVRNLRSLFLYSNELSG----SIPKEIGNLRSLSNLDLSINRLNGVIPSSIG-----NSN 299
               LR L+L   ++S     S+   +    SL  LDLS N L       +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 300 NLSILYLYSNQLSGSIPKEIGNLK 323
            L  L LY    S  +   +  L+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 8e-06
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 422 LSFLDLSHNNF-HGQISSDWGRFPQLGTLDFSVNNITG----SIPPEIGNSSKLQVLNLS 476
           +  LD+        + +       Q   +      +T      I   +  +  L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 477 SNHIGGKIPMELGRLSSLNKLILNKNQLFG 506
           SN +G      + +        + K  L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 9e-06
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 229 LSNLNMSMNHLSGA-IPSSIGNVRNLRSLFLYSNELSGSIPKEIG----NLRSLSNLDLS 283
           + +L++    LS A     +  ++  + + L    L+ +  K+I        +L+ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 284 INRLNGVIPSSIG-----NSNNLSILYLYSNQ 310
            N L  V    +       S  +  L L +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 23/119 (19%)

Query: 429 HNNFHGQISSDWGRFPQLGTLDFSVNNITG----SIPPEIGNSSKLQVLNLSSNHIGGKI 484
                            L  L  +  +++     S+   +  +  L+ L+LS+N +G   
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 485 PMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVH 543
            ++L                             LE L L +   S  +   L  L K  
Sbjct: 414 ILQLVESVRQPG-------------------CLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 2e-05
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 227 KCLSNLNMSMNHLSG----AIPSSIGNVRNLRSLFLYSNELSGSIPKEIG-----NLRSL 277
             L  L ++   +S     ++ +++    +LR L L +N L  +   ++          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 278 SNLDLSINRLNGVIPSSIG----NSNNLSIL 304
             L L     +  +   +     +  +L ++
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 6e-05
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 540 LKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGE----IPSQICNMESLVKLN 595
           L +  L++   E S     +   L  Q   + L    L       I S +    +L +LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 596 LSYNQLSGFIPNCFEDMHGLSSIDISYNRLQG 627
           L  N+L     +C        S  I    LQ 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 8e-05
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 297 NSNNLSILYLYSNQLSG----SIPKEIGNLKCLFDLELSMNNLTGVIPSSIG-----NLR 347
             + L +L+L    +S     S+   +     L +L+LS N L       +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 348 NLRLLYLYRNELSGSIPQAIGNLVE 372
            L  L LY    S  +   +  L +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 9/120 (7%)

Query: 47  CAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQL 106
            +         E  +  N    +    L +        L  L L + ++       ++  
Sbjct: 333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 392

Query: 107 FK----LQYLDLSANKLSGKIPPEIGQ-----LSFLSELSLYSNCLNGSIPQSLGNLSKQ 157
                 L+ LDLS N L      ++ +        L +L LY    +  +   L  L K 
Sbjct: 393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 84  DLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANKLSGK----IPPEIGQLSFLSELSL 138
           D+  L++   EL      ++   L + Q + L    L+      I   +     L+EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 139 YSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGY 170
            SN L       +    +     +   SL   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 5/87 (5%)

Query: 160 LSLYNNSLS-GYIPPVIGNLISLSTLDLSLNQL----IGSVPFFLGNLTNLVTLHLFNNS 214
           L +    LS      ++  L     + L    L       +   L     L  L+L +N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 215 LSGFIPSTLGKLKCLSNLNMSMNHLSG 241
           L       + +     +  +    L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 10/89 (11%)

Query: 533 PGSLGNLLKVHYLNLSNNEFSHK----IPTQFEKLQLQLSELDLSQNFLEGEIPSQIC-- 586
            G       +  L L++ + S      +          L ELDLS N L      Q+   
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH-SLRELDLSNNCLGDAGILQLVES 420

Query: 587 ---NMESLVKLNLSYNQLSGFIPNCFEDM 612
                  L +L L     S  + +  + +
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 9/93 (9%)

Query: 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQ----ISSDWGRFPQLGTLDF 451
           ++  + +    LS       +        + L            ISS     P L  L+ 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 452 SVNNITGSIPPEIG-----NSSKLQVLNLSSNH 479
             N +       +       S K+Q L+L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 21/111 (18%)

Query: 109 LQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL 167
           +Q LD+   +LS     E+   L     + L    L  +  + + +              
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-------------- 49

Query: 168 SGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF 218
                  +    +L+ L+L  N+L       +       +  +   SL   
Sbjct: 50  ------ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 153 NLSKQSLLSLYNNSLSG----YIPPVIGNLISLSTLDLSLNQLIGSVPFFLG-----NLT 203
             S   +L L +  +S      +   +    SL  LDLS N L  +    L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 204 NLVTLHLFNNSLSGFIPSTLGKLK 227
            L  L L++   S  +   L  L+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 108 KLQYLDLSANKLSGK----IPPEIGQLSFLSELSLYSNCLNGSIPQSLG-----NLSKQS 158
            L+ L L+   +S      +   +     L EL L +NCL  +    L            
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 159 LLSLYNNSLSGYIPPVIGNL 178
            L LY+   S  +   +  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 9/84 (10%)

Query: 177 NLISLSTLDLSLNQL----IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGK-----LK 227
               L  L L+   +      S+   L    +L  L L NN L       L +       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 228 CLSNLNMSMNHLSGAIPSSIGNVR 251
            L  L +   + S  +   +  + 
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 19/229 (8%)

Query: 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGF 380
            L     +    +N+T  +  +  +L  +  L  +   ++    + +  L  L+ L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 381 NYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDW 440
           N      P         + +  N       I+         L+   ++       +S+  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 441 GRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILN 500
             +  L  +         +    +           S  +        L  LS L  L  +
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYL-----------SIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 501 KNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSN 549
            N++       + +L  L  + L  N++S+  P  L N   +  + L+N
Sbjct: 182 DNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 36/234 (15%), Positives = 82/234 (35%), Gaps = 24/234 (10%)

Query: 82  FPD-----LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL 136
           FPD      + +    + +   +    + L  +  L      ++      +  L+ L  L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGL 68

Query: 137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP 196
            L  N +    P            +L   +        + N+ +++ L       + S  
Sbjct: 69  ELKDNQITDLAPLK----------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
                    ++           I +        +   +S+ +   +  + + N+  L +L
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQ 310
               N++S   P  + +L +L  + L  N+++ V P  + N++NL I+ L +NQ
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL-TNQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 35/226 (15%), Positives = 76/226 (33%), Gaps = 18/226 (7%)

Query: 153 NLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFN 212
            L+    ++   ++++  +     +L  ++TL      +       +  L NL+ L L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 213 NSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG 272
           N ++   P           L+ +      AI           +    ++    +    + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
            L                I +    +   ++ YL       S    + NL  L  L+   
Sbjct: 133 VL----------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 333 NNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLL 378
           N ++ + P  + +L NL  ++L  N++S   P  + N   L  + L
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 36/231 (15%), Positives = 72/231 (31%), Gaps = 20/231 (8%)

Query: 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
            L +   +    + +   +  +  + + ++ L  +   ++    + +  L  L  LEL  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 333 NNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFK 392
           N +T + P           L     +   +I          ++     +        N +
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452
            L   +    N + L               +   LS  N      +      +L TL   
Sbjct: 133 VLYLDLNQITNISPL-----------AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 453 VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503
            N I+   P  + +   L  ++L +N I    P  L   S+L  + L  NQ
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 23/223 (10%)

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
           F    L N + +    ++++  +  T   L  ++ L+     ++      +  + NL  L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGL 68

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP 316
            L  N+++   P +     +   L  +  +    I                ++    +  
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 317 KEIGNL--------------KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGS 362
             +  L                     LS+ N      + + NL  L  L    N++S  
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 363 IPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRM-NQ 404
            P  + +L  L+ + L  N      P    N +NL  V + NQ
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 39/238 (16%), Positives = 80/238 (33%), Gaps = 22/238 (9%)

Query: 386 PIPKNF--KNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRF 443
            I   F    L N +++   ++N++  +++A       ++ L                  
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT--IEGVQYL 62

Query: 444 PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503
             L  L+   N IT      + N +K+  L LS N +     +   +      L   +  
Sbjct: 63  NNLIGLELKDNQIT--DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 504 LFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL 563
               L              L  +         L  L  + YL++ N + S   P      
Sbjct: 121 DVTPLAGLSNLQ------VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS- 173

Query: 564 QLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDIS 621
             +L+ L    N +    P  + ++ +L++++L  NQ+S   P    +   L  + ++
Sbjct: 174 --KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 35/217 (16%), Positives = 75/217 (34%), Gaps = 22/217 (10%)

Query: 129 QLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSL 188
            L+   +++   + +  ++ Q+  +L   + LS +   ++      +  L +L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248
           NQ+    P         + L          I                 +    A  S++ 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 249 NVRNLRSLFLYSNEL--------------SGSIPKEIGNLRSLSNLDLSINRLNGVIPSS 294
            +    +     + L                S    + NL  L+ L    N+++ + P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 295 IGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELS 331
           + +  NL  ++L +NQ+S   P  + N   LF + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 20/229 (8%)

Query: 345 NLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQ 404
            L N   +   ++ ++ ++ QA  +L  + +L            +  + L NL+ + +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 405 NNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI 464
           N ++             L  L                          +++  +  I    
Sbjct: 73  NQIT---------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 465 GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLS 524
             +    +  L  +         L  L+  N   L+      S    +  L++L  L   
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 525 ENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLS 573
           +N++S+  P  L +L  +  ++L NN+ S   P         L  + L+
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTS-NLFIVTLT 225

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 7e-07
 Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 16/203 (7%)

Query: 153 NLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFN 212
             ++    +L   S++  +      L S+  +  + + +       +  L N+  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 213 NSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG 272
           N L+   P  L  LK L  L +  N +               SL         +   +I 
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE-------HNGISDIN 128

Query: 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
            L  L  L+      N +   ++ +           +     I   +  L  L +L LS 
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSK 187

Query: 333 NNLTGVIPSSIGNLRNLRLLYLY 355
           N+++ +   ++  L+NL +L L+
Sbjct: 188 NHISDL--RALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 29/217 (13%), Positives = 71/217 (32%), Gaps = 23/217 (10%)

Query: 339 IPSSIG------NLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFK 392
           +P+ I                L +  ++ ++ Q    L  +  ++   +  +       +
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQ--GIQ 65

Query: 393 NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452
            L N+ ++ +N N L+     A       L  L     + +        +  +       
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLAN------LKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119

Query: 453 VNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI 512
            +N    I   +       +   ++      +   L +       +  ++     + P +
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK----LDTLSLEDNQISDIVP-L 174

Query: 513 GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSN 549
             LT+L+ L LS+N +S+    +L  L  +  L L +
Sbjct: 175 AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 31/207 (14%), Positives = 68/207 (32%), Gaps = 16/207 (7%)

Query: 77  FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL 136
           FS  +F + +  NL    +   +    ++L  +  +  + + +       I  L  +++L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKL 73

Query: 137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP 196
            L  N L          L+    L       +          +         +  I  + 
Sbjct: 74  FLNGNKLTDIK-----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
             +            N      + S L KL  LS  +  ++ +       +  +  L++L
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-----VPLAGLTKLQNL 183

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLS 283
           +L  N +S    + +  L++L  L+L 
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 23/193 (11%)

Query: 300 NLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNEL 359
                 L    ++ ++ +    L  +  +  + +++  V    I  L N+  L+L  N+L
Sbjct: 25  ETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80

Query: 360 SGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN---------------LVRVRMNQ 404
           +    + + NL  L  L L  N  +                           +   ++  
Sbjct: 81  TD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 405 NNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI 464
             L  N                LS  +             +L  L  S N+I+      +
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRAL 196

Query: 465 GNSSKLQVLNLSS 477
                L VL L S
Sbjct: 197 AGLKNLDVLELFS 209

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSG 169
           + L L+   L+  +   + QL  ++ L L  N L    P +L  L  + L  L  +  + 
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAAL--RCLEVLQASDNAL 55

Query: 170 YIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKC 228
                + NL  L  L L  N+L   +    L +   LV L+L  NSL           + 
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 229 LSNLN 233
           L +++
Sbjct: 116 LPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 12/127 (9%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSI 147
           L+L + +L   +   + QL  + +LDLS N+L   +PP +  L  L  L    N L    
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE--N 57

Query: 148 PQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLSTLDLSLNQL------IGSVPFFLG 200
              + NL +   L L NN L        + +   L  L+L  N L         +   L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 201 NLTNLVT 207
           ++++++T
Sbjct: 118 SVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 254 RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG 313
           R L L   +L+  +   +  L  +++LDLS NRL  + P ++     L +L    N    
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--L 55

Query: 314 SIPKEIGNLKCLFDLELSMNNLTGV-IPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVE 372
                + NL  L +L L  N L        + +   L LL L  N L          L E
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114

Query: 373 LVSLL 377
           ++  +
Sbjct: 115 MLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 497 LILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKI 556
           L L    L  ++   +  L  +  LDLS NRL    P     L  +  L +     +   
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56

Query: 557 PTQFEKLQLQLSELDLSQNFLEG-EIPSQICNMESLVKLNLSYNQLSG 603
                    +L EL L  N L+       + +   LV LNL  N L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS 507
            L  +  ++T  +   +     +  L+LS N +    P  L  L  L   +L  +     
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALE 56

Query: 508 LPPEIGTLTELELLDLSENRLSN-AIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQ 566
               +  L  L+ L L  NRL   A    L +  ++  LNL  N    +     E+L   
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 115

Query: 567 LSEL 570
           L  +
Sbjct: 116 LPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI 219
           L L +  L+  +   +  L+ ++ LDLS N+L    P     L  L  L   +N+     
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNA--LEN 57

Query: 220 PSTLGKLKCLSNLNMSMNHL-SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSL 277
              +  L  L  L +  N L   A    + +   L  L L  N L          L  +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-05
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387
           L L+  +LT  +   +  L  +  L L  N L    P A+  L  L  L    N      
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHG 434
                    L  + +  N L  + +   + + P L  L+L  N+   
Sbjct: 60  GVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 207 TLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGS 266
            LHL +  L+  +   L +L  +++L++S N L    P ++  +R L  L    N     
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LE 56

Query: 267 IPKEIGNLRSLSNLDLSINRLNGV-IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCL 325
               + NL  L  L L  NRL        + +   L +L L  N L          L  +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

Query: 326 F 326
            
Sbjct: 116 L 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 350 RLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSG 409
           R+L+L   +L+  +   +  L+ +  L L  N  R   P     L  L  ++ + N L  
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 410 NISEAFVGTYPTLSFLDLSHNNF-HGQISSDWGRFPQLGTLDFSVNNITG 458
               A     P L  L L +N              P+L  L+   N++  
Sbjct: 58  VDGVAN---LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 37/332 (11%), Positives = 90/332 (27%), Gaps = 19/332 (5%)

Query: 255 SLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG----VIPSSIGNSNNLSILYLYSNQ 310
            L   + E   S+   +    S+  + LS N +       +  +I +  +L I       
Sbjct: 11  KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 70

Query: 311 ---LSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAI 367
              +   IP+ +  L         ++ +     +     +   + +L ++     +    
Sbjct: 71  TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 130

Query: 368 GNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDL 427
             L       +        + K  KN   L  +   +N L     + +  T+ +   L  
Sbjct: 131 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 190

Query: 428 SHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME 487
                +G            G        +         +     +     +    +    
Sbjct: 191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 250

Query: 488 LGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSL-----GNLLKV 542
                  + L+  +                L+ L L  N +      +L       +  +
Sbjct: 251 N------DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 543 HYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQ 574
            +L L+ N FS +     ++++   S     +
Sbjct: 305 LFLELNGNRFS-EEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 37/322 (11%), Positives = 90/322 (27%), Gaps = 32/322 (9%)

Query: 227 KCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG----SIPKEIGNLRSLSNLDL 282
           K L    ++      ++ + +    +++ + L  N +       + + I + + L   + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 283 SINRL----------NGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
           S                ++  ++     L  + L  N    +  + + +          +
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 333 NNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQA-----IGNLVELVSLLLGFNYFRGPI 387
                 +    G      L  L  N+ + + P         N +E  S+      F+   
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447
             +   +           +L                  +   +     ++     +P L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 448 TLDFSVNNITGSIPPEIGN------SSKLQVLNLSSNHIGGKIPMEL-----GRLSSLNK 496
            L  +   ++      + +      +  LQ L L  N I       L      ++  L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 497 LILNKNQLFGSLPPEIGTLTEL 518
           L LN N+ F      +  + E+
Sbjct: 307 LELNGNR-FSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 36/344 (10%), Positives = 97/344 (28%), Gaps = 33/344 (9%)

Query: 276 SLSNLDLSINRLNGV----IPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELS 331
           S+    L ++ +       + + +   +++  + L  N +     + +            
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE---------- 53

Query: 332 MNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNF 391
                    +S  +L       ++   +   IP+A+  L++ +      +  R       
Sbjct: 54  -------NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106

Query: 392 KNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDF 451
                 +   ++++    ++     G  P  +   ++       ++      P L ++  
Sbjct: 107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSIIC 165

Query: 452 SVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPE 511
             N +  +   +    +      L +  +        G    L + +    +L      +
Sbjct: 166 GRNRLE-NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 224

Query: 512 IGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELD 571
                       S               L ++   LS    +  +    +   + L  L 
Sbjct: 225 NTFTH-----LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 279

Query: 572 LSQNFLEGEIPSQIC-----NMESLVKLNLSYNQLSGFIPNCFE 610
           L  N +E +    +       M  L+ L L+ N+ S       E
Sbjct: 280 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 323

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 45/345 (13%), Positives = 99/345 (28%), Gaps = 36/345 (10%)

Query: 326 FDLE---LSMNNLTGV----IPSSIGNLRNLRLLYLYRNELSG----SIPQAIGNLVELV 374
           F +E   L ++ +T      + + +    +++ + L  N +       + + I +  +L 
Sbjct: 3   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 375 SLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLS--GNISEAFVGTYPTLSFLDLSHNNF 432
                  +      +  + L  L++  +    L        AF  T        LS +  
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 433 HGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLS 492
              +               +      ++  +  N+  L+ +    N +      E  +  
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552
             ++L+     +   + PE      LE L                 L  +   + +    
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLA------------YCQELKVLDLQDNTFTHL 230

Query: 553 SHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNM------ESLVKLNLSYNQLSGFIP 606
                    K    L EL L+   L     + + +         L  L L YN++     
Sbjct: 231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 290

Query: 607 NC-----FEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGN 646
                   E M  L  ++++ NR           R+  +   +G 
Sbjct: 291 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 44/356 (12%), Positives = 89/356 (25%), Gaps = 45/356 (12%)

Query: 156 KQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQL----IGSVPFFLGNLTNLVTLHLF 211
              L ++        +  V+    S+  + LS N +       +   + +  +L      
Sbjct: 9   SLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 212 NNS---LSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIP 268
           +     +   IP  L  L         ++ +  +  +     +     FL  +     + 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 269 KEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDL 328
                L   +   ++       +     N+  L  +    N+L     KE         L
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 329 ELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIP 388
             ++  +   I         L  L   +      +                 +     + 
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-----------FTHLGSSALA 236

Query: 389 KNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGT 448
              K+  NL  + +N   LS   + A V  +  L                       L T
Sbjct: 237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE-------------------NIGLQT 277

Query: 449 LDFSVNNITGSIPPEI-----GNSSKLQVLNLSSNHIG--GKIPMELGRLSSLNKL 497
           L    N I       +          L  L L+ N       +  E+  + S    
Sbjct: 278 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 40/322 (12%), Positives = 82/322 (25%), Gaps = 32/322 (9%)

Query: 86  LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK----IPPEIGQLSFLSELSLYSN 141
           L L+    E    +   + +   ++ + LS N +  +    +   I     L        
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 142 C---LNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFF 198
               +   IP++L  L +  L     +++                  LS +  +  +   
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 199 LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFL 258
              L       +        +         L ++    N L                L  
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 259 YSNELSGSIPKEIGNLRSLSNL-------------DLSINRLNGVIPSSIGNSNNLSILY 305
               +   I  E      L  L             +   +  +  +  ++ +  NL  L 
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249

Query: 306 LYSNQLSGSIPKEIGN------LKCLFDLELSMNNLTGVIPSSI-----GNLRNLRLLYL 354
           L    LS      + +         L  L L  N +      ++       + +L  L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 355 YRNELSGSIPQAIGNLVELVSL 376
             N         +  + E+ S 
Sbjct: 310 NGNRF-SEEDDVVDEIREVFST 330

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 37/200 (18%), Positives = 72/200 (36%), Gaps = 16/200 (8%)

Query: 153 NLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFN 212
            L+++    L   +++  +     +L  ++TL       I S+   +  L NL  ++  N
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSN 71

Query: 213 NSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIG 272
           N L+            L NL   ++ L      +        +        +  I     
Sbjct: 72  NQLTDIT--------PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 123

Query: 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSM 332
                +   L ++       S++    +L  L   SNQ++   P  + NL  L  L++S 
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 181

Query: 333 NNLTGVIPSSIGNLRNLRLL 352
           N ++ +  S +  L NL  L
Sbjct: 182 NKVSDI--SVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 33/192 (17%), Positives = 57/192 (29%), Gaps = 23/192 (11%)

Query: 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGF 380
            L       L   N+T  +  +  +L  +  L   R  +  SI   +  L  L  +    
Sbjct: 16  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSN 71

Query: 381 NYFRGPI---------------PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFL 425
           N                      +            +    L  N            +  
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 426 DLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP 485
            L  ++      S       L  L+FS N +T   P  + N + L+ L++SSN +     
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--I 187

Query: 486 MELGRLSSLNKL 497
             L +L++L  L
Sbjct: 188 SVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 16/200 (8%)

Query: 177 NLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236
            L       L    +  +V     +L  + TL      +       +  L  L+ +N S 
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 71

Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIG 296
           N L+         +  L++L    + L  +         +       +   N  I     
Sbjct: 72  NQLTD--------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 123

Query: 297 NSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYR 356
             N  ++  L  +  + S    +  L  L  L  S N +T + P  + NL  L  L +  
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 181

Query: 357 NELSGSIPQAIGNLVELVSL 376
           N++S      +  L  L SL
Sbjct: 182 NKVSD--ISVLAKLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 5/156 (3%)

Query: 88  LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSI 147
           LN    E    +   +S+ +      L    L  +  P++   +    L+   + +  ++
Sbjct: 1   LNELKPEQVEQLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATL 57

Query: 148 PQSLGNLSKQSLLSLYNNSLSGY--IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNL 205
                N+ +   L+L NN L     +  ++    +L  L+LS N+L             L
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 206 VTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241
             L L  NSLS         +  +      +  L G
Sbjct: 118 EELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDG 153

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 5/147 (3%)

Query: 146 SIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNL 205
            +   +      S  +L    L     P +        L+   + +  ++     N+  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPEL 67

Query: 206 VTLHLFNNSLSGF--IPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL 263
           ++L+L NN L     + S + K   L  LN+S N L             L  L+L  N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 264 SGSIPKEIGNLRSLSNLDLSINRLNGV 290
           S +   +   + ++      + RL+G 
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRLDGH 154

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 5/152 (3%)

Query: 189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248
            + +  +   +    +     L    L       L        LN   + ++  +     
Sbjct: 6   PEQVEQLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRR-SSMAATLRIIEE 62

Query: 249 NVRNLRSLFLYSNELSG--SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYL 306
           N+  L SL L +N L     +   +    +L  L+LS N L             L  L+L
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 307 YSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV 338
             N LS +   +   +  + +    +  L G 
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGH 154

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 9/152 (5%)

Query: 494 LNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFS 553
           LN+L   K +    L   +    +     L    L +     L        LN  ++  +
Sbjct: 1   LNEL---KPEQVEQLKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRRSS-MA 54

Query: 554 HKIPTQFEKLQLQLSELDLSQNFLEG--EIPSQICNMESLVKLNLSYNQLSGFIPNCFED 611
             +    E +  +L  L+LS N L    ++ S +    +L  LNLS N+L          
Sbjct: 55  ATLRIIEENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK 113

Query: 612 MHGLSSIDISYNRLQGPVPFSKAFRDAPAEAL 643
              L  + +  N L         +  A  E  
Sbjct: 114 GLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 7/129 (5%)

Query: 444 PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503
                LD           P++   +   VLN  S+     + +    +  L  L L+ N+
Sbjct: 22  GSQQALDLKGLRS----DPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNR 76

Query: 504 L--FGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFE 561
           L     +   +     L++L+LS N L +         LK+  L L  N  S     Q  
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 562 KLQLQLSEL 570
            +       
Sbjct: 137 YISAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 5/137 (3%)

Query: 243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLS 302
           +   +    +     L    L      ++        L+   + +   +     N   L 
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELL 68

Query: 303 ILYLYSNQLSG--SIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS 360
            L L +N+L     +   +     L  L LS N L             L  L+L  N LS
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

Query: 361 GSIPQAIGNLVELVSLL 377
            +       +  +    
Sbjct: 129 DTFRDQSTYISAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 14/129 (10%)

Query: 71  NGTLDEFSFSSFPDLLFLNLFN-----NELFGIIPPQISQLFKLQYLDLSANKLSGK--I 123
              LD     S PDL+  N+       + +   +      + +L  L+LS N+L     +
Sbjct: 24  QQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDM 83

Query: 124 PPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS-------GYIPPVIG 176
              + +   L  L+L  N L            K   L L  NSLS        YI  +  
Sbjct: 84  SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143

Query: 177 NLISLSTLD 185
               L  LD
Sbjct: 144 RFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)

Query: 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCL 325
            +   +      S   L +  L       +   N   +L    + ++ ++     N+  L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPEL 67

Query: 326 FDLELSMNNLTGV--IPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYF 383
             L LS N L  +  + S +    NL++L L  NEL           ++L  L L  N  
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 384 RGPIPKNFKNLTNLVRVRMNQNNLSGN 410
                     ++ +         L G+
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRLDGH 154

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 9e-05
 Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 7/138 (5%)

Query: 150 SLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLH 209
              N  +   L L    +   I  +   L     +D S N++     F    L  L TL 
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLL 69

Query: 210 LFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNE----LSG 265
           + NN +          L  L+ L ++ N L               +              
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 266 SIPKEIGNLRSLSNLDLS 283
                I  +  +  LD  
Sbjct: 130 YRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 7/136 (5%)

Query: 245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSIL 304
           +   N    R L L   ++   I      L     +D S N +  +          L  L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 68

Query: 305 YLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV----IPSSIGNLRNLRLLYLYRNELS 360
            + +N++          L  L +L L+ N+L  +      +S+ +L  L +L        
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 361 GSIPQAIGNLVELVSL 376
                 I  + ++  L
Sbjct: 129 HYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 7/139 (5%)

Query: 101 PQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL 160
            Q +   + + LDL   K+   I      L     +    N +          L +   L
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHLFN---NSLS 216
            + NN +      +   L  L+ L L+ N L+       L +L +L  L +      +  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 217 GFIPSTLGKLKCLSNLNMS 235
            +    + K+  +  L+  
Sbjct: 129 HYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 6/135 (4%)

Query: 443 FPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKN 502
             +   LD     I   I        +   ++ S N I          L  L  L++N N
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNN 73

Query: 503 QLFGSLPPEIGTLTELELLDLSENRLSN-AIPGSLGNLLKVHYLNLSNNEFSHKIPTQFE 561
           ++          L +L  L L+ N L        L +L  + YL +  N  ++K   +  
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 562 KLQL--QLSELDLSQ 574
            +    Q+  LD  +
Sbjct: 134 VIYKVPQVRVLDFQK 148

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 13/59 (22%)

Query: 729 TYDQIIRATNDFDEEY---------CIGKGAQGSLYKAKL----QSEDLIAVKKFNSQL 774
           T++    A  +F +E           IG G  G +    L    + E  +A+K   S  
Sbjct: 8   TFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 2/126 (1%)

Query: 387 IPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQL 446
              +     NL  + +       ++    +     L  L +  +         +   P+L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 447 GTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME-LGRLSSLNKLILNKNQLF 505
             L+ S N +  S+  +      LQ L LS N +     +  L R        + + +L 
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 506 GSLPPE 511
                 
Sbjct: 142 CHGQGP 147

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 9e-04
 Identities = 22/157 (14%), Positives = 39/157 (24%), Gaps = 5/157 (3%)

Query: 125 PEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPP-VIGNLISLST 183
           P+       S L    +         L      + L + N     ++    +  L  L  
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 184 LDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI 243
           L +  + L    P        L  L+L  N+L      T+  L     +           
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120

Query: 244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNL 280
              +          +   +L        G L  + N 
Sbjct: 121 LRWLQRWEEEGLGGVPEQKLQCHGQ---GPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 3/145 (2%)

Query: 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN-HIGGKIPMELGRLSSLNKLILNKNQ 503
               L  + +         +  +  L  L + +  H+      +L  L  L  L + K+ 
Sbjct: 9   GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 504 LFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL 563
           L    P        L  L+LS N L + +       L +  L LS N        ++ + 
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 564 QLQLSELDLSQNFLEGEIPSQICNM 588
             +     + +  L+      + +M
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHM 151

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/175 (15%), Positives = 48/175 (27%), Gaps = 13/175 (7%)

Query: 146 SIPQSLGNLSK---QSLLSLYNNSLSGYIPPV------IGNLISLSTLDLSLNQLIGSVP 196
           +I  ++    +             L G IPP+      +  L +   L LS    I  + 
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKIS 64

Query: 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSL 256
             L  + NL  L L  N         L  +           +   ++      V      
Sbjct: 65  -SLSGMENLRILSLGRN--LIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121

Query: 257 FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL 311
              +   +     ++  L  L +L L+ N L      +   S     +      L
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771
            D      +G G  G +   K + +  +A+K   
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK 37

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771
           ++      IG G  G ++     ++D +A+K   
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIR 38

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 6/36 (16%), Positives = 12/36 (33%)

Query: 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773
                E  +G+G  G ++         +A+K     
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	775
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.63
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.99
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	96.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.79
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	96.75
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	96.54
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	96.45
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	96.39
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	96.25
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	96.2
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	96.19
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	95.97

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.3e-38  Score=325.14  Aligned_cols=291  Identities=30%  Similarity=0.510  Sum_probs=214.3

Q ss_pred             CcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCC--cccceeeCCC---CCEEEEEcCCCCCcc--ccCccccC
Q 043943            8 DSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLC--AWSGIYCNHD---ERVVGINLTTTSLNG--TLDEFSFS   80 (775)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c--~w~gv~c~~~---~~v~~l~l~~~~~~~--~~~~~~~~   80 (775)
                      |.++|++||++||+++.+ | ..+.+|.      .+.|||  .|.||+|+..   +||+.|+|+++++.|  .+| ..+.
T Consensus         3 c~~~e~~aLl~~k~~~~~-~-~~l~sW~------~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp-~~l~   73 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGN-P-TTLSSWL------PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLA   73 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTC-C-GGGTTCC------TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGG
T ss_pred             CCHHHHHHHHHHHHHCCC-C-CcCCCCC------CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCC-hHHh
Confidence            789999999999999975 4 3688997      467999  4999999853   379999999998887  456 6778


Q ss_pred             CCCCCCEEECCC-CCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCE
Q 043943           81 SFPDLLFLNLFN-NELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSL  159 (775)
Q Consensus        81 ~l~~L~~L~ls~-~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  159 (775)
                      ++++|++|+|++ |.+.|.+|..|+++++|++|+|++|.+.+..+..+..+.+|+++++++|.+.+.+|..+.++++|++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            888888888876 6777778888888888888888888888777777788888888888888877777777888888888


Q ss_pred             EEcccCcCcccCCcccCCCCCC-CEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccc
Q 043943          160 LSLYNNSLSGYIPPVIGNLISL-STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH  238 (775)
Q Consensus       160 L~l~~n~~~~~~~~~l~~l~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  238 (775)
                      +++++|.+.+.+|..+..+..+ +.++++.|++++..|..+..+..+ .+++..+...+..|..+..+++|+.+++.++.
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            8888777777777777666665 667777777776666666554433 56666666666666666666777777776666


Q ss_pred             ccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcc
Q 043943          239 LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQ  310 (775)
Q Consensus       239 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  310 (775)
                      +.+.++ .+..+++|+.|++++|++++.+|..|+++++|++|+|++|+++|.+|. +..+++|+.+++.+|+
T Consensus       233 l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         233 LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            665443 455666666666666666666666666666666666666666665553 4555666666666664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=6.4e-29  Score=255.19  Aligned_cols=238  Identities=26%  Similarity=0.488  Sum_probs=197.8

Q ss_pred             ccCCCCcEEeCCC-ccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCC
Q 043943          417 GTYPTLSFLDLSH-NNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLN  495 (775)
Q Consensus       417 ~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  495 (775)
                      +.+++|++|++++ |++.|.+|..+.++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+..++.|+
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence            5667777777765 677777787888888888888888888887777788888888888888888888888888888888


Q ss_pred             EEEcCCCcCcccCCcCccCCCCC-CEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcC
Q 043943          496 KLILNKNQLFGSLPPEIGTLTEL-ELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQ  574 (775)
Q Consensus       496 ~L~L~~n~~~~~~~~~~~~l~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~  574 (775)
                      .+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.. ..++++++...+.+|..+..+. +++.+++++
T Consensus       153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~-~l~~l~~~~  230 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDK-NTQKIHLAK  230 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTS-CCSEEECCS
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-ccccccccc
Confidence            88888888888888888777776 78888888888888887776654 4788888888888888887777 899999999


Q ss_pred             CcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCcCCCCCCC
Q 043943          575 NFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDK  654 (775)
Q Consensus       575 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~~  654 (775)
                      |.+++.+| .++.+++|+.|++++|+++|.+|..+.++++|++|++++|+++|.+|....+..+....+.||+.+||.| 
T Consensus       231 ~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~p-  308 (313)
T d1ogqa_         231 NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP-  308 (313)
T ss_dssp             SEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT-
T ss_pred             cccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCC-
Confidence            99887655 5788899999999999999999999999999999999999999999987777788888899999999843 


Q ss_pred             CCCCC
Q 043943          655 GLSSC  659 (775)
Q Consensus       655 ~~~~c  659 (775)
                       .+.|
T Consensus       309 -lp~c  312 (313)
T d1ogqa_         309 -LPAC  312 (313)
T ss_dssp             -SSCC
T ss_pred             -CCCC
Confidence             3455

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4.7e-26  Score=241.48  Aligned_cols=342  Identities=23%  Similarity=0.327  Sum_probs=205.5

Q ss_pred             CCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCee
Q 043943          225 KLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSIL  304 (775)
Q Consensus       225 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  304 (775)
                      .+.+|++|+++++.++..  +.+..+++|++|++++|.+++. + .+.++++|++|++++|++.+..  .++.+++|+.|
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--ccccccccccc
Confidence            455677777777766532  3466667777777777776643 2 2666677777777777666432  25566666666


Q ss_pred             eccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceec
Q 043943          305 YLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFR  384 (775)
Q Consensus       305 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  384 (775)
                      ++.++.+++..+  ......+.......+.+......................                           
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------------  166 (384)
T d2omza2         116 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT---------------------------  166 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC---------------------------
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccc---------------------------
Confidence            666665553321  223334444444444443222211111111111111100                           


Q ss_pred             ccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccc
Q 043943          385 GPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEI  464 (775)
Q Consensus       385 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  464 (775)
                        ....+.............+....  . .....+++++.+++++|.+++..+  +..+++|++|++++|.++..  ..+
T Consensus       167 --~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l  237 (384)
T d2omza2         167 --DLKPLANLTTLERLDISSNKVSD--I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTL  237 (384)
T ss_dssp             --CCGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             --hhhhhcccccccccccccccccc--c-cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chh
Confidence              01111122222222222222211  1 112456667777777777665433  34566777777777777642  356


Q ss_pred             cCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCE
Q 043943          465 GNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHY  544 (775)
Q Consensus       465 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  544 (775)
                      ..+++|+.|++++|.+++..+  +..+++|++|++++|++++..  .+..++.++.+++++|.+.+.  ..+..+++++.
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~  311 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTY  311 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSE
T ss_pred             hcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCe
Confidence            777788888888887775443  667778888888888776442  366777788888888877653  34677788888


Q ss_pred             EEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCC
Q 043943          545 LNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN  623 (775)
Q Consensus       545 L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n  623 (775)
                      |++++|++++..  .+..++ +|+.|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       312 L~ls~n~l~~l~--~l~~l~-~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         312 LTLYFNNISDIS--PVSSLT-KLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCSCCG--GGGGCT-TCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EECCCCCCCCCc--ccccCC-CCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            888888887643  266666 88888888888874 33 57888888888888888887655  778888888888877

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=4.3e-26  Score=241.79  Aligned_cols=355  Identities=25%  Similarity=0.335  Sum_probs=234.9

Q ss_pred             ccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCC
Q 043943          186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG  265 (775)
Q Consensus       186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  265 (775)
                      ++.+.+++.+.  ...+.+|++|+++++.++..  +.+..+++|++|++++|++++..  .++++++|++|++++|.+.+
T Consensus        29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             hCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccc
Confidence            44444443332  24567899999999999854  46788999999999999998543  38999999999999999985


Q ss_pred             CCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCC
Q 043943          266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGN  345 (775)
Q Consensus       266 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  345 (775)
                      ..  .+..+++|+.|+++++.+++..+  ......+.......+.+....+..................     ...+..
T Consensus       103 i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  173 (384)
T d2omza2         103 IT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLAN  173 (384)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTT
T ss_pred             cc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccch-----hhhhcc
Confidence            43  38899999999999999876543  3455677777777777664433222222222222111111     122334


Q ss_pred             CCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEE
Q 043943          346 LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFL  425 (775)
Q Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  425 (775)
                      .+.........|...  ....+..+++++.+++++|.+++..+  +                         ..+++|++|
T Consensus       174 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~-------------------------~~~~~L~~L  224 (384)
T d2omza2         174 LTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--L-------------------------GILTNLDEL  224 (384)
T ss_dssp             CTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--G-------------------------GGCTTCCEE
T ss_pred             ccccccccccccccc--cccccccccccceeeccCCccCCCCc--c-------------------------cccCCCCEE
Confidence            445555555555433  22334555566666666555543322  1                         334556666


Q ss_pred             eCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCc
Q 043943          426 DLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF  505 (775)
Q Consensus       426 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~  505 (775)
                      ++++|.++..  ..+..+++|+.|++++|.+++..  .+..+++|++|++++|++.+..+  +..++.++.+.+.+|.+.
T Consensus       225 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~  298 (384)
T d2omza2         225 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE  298 (384)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred             ECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCc--cccccccccccccccccc
Confidence            6666665532  24556677777777777766543  26667777777777777765432  666777777777777776


Q ss_pred             ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccc
Q 043943          506 GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI  585 (775)
Q Consensus       506 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l  585 (775)
                      +.  ..+..+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .+..++ +|+.|++++|++++..|  +
T Consensus       299 ~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~-~L~~L~l~~N~l~~l~~--l  369 (384)
T d2omza2         299 DI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLT-NINWLSAGHNQISDLTP--L  369 (384)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCT-TCCEEECCSSCCCBCGG--G
T ss_pred             cc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCC-CCCEEECCCCcCCCChh--h
Confidence            42  34667777888888888877653  36777888888888888764 33 577776 88888888888886554  7


Q ss_pred             cCCCCCcEEeCCCC
Q 043943          586 CNMESLVKLNLSYN  599 (775)
Q Consensus       586 ~~l~~L~~L~ls~n  599 (775)
                      .++++|+.|+|++|
T Consensus       370 ~~l~~L~~L~L~~N  383 (384)
T d2omza2         370 ANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCTTCSEEECCCE
T ss_pred             ccCCCCCEeeCCCC
Confidence            88888888888887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.5e-24  Score=217.83  Aligned_cols=251  Identities=22%  Similarity=0.306  Sum_probs=176.1

Q ss_pred             CCCCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCC
Q 043943           42 TKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG  121 (775)
Q Consensus        42 ~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~  121 (775)
                      +...-|.|.++.|...           ++. ++| ..+  .+++++|+|++|+++...+..|.++++|++|++++|.+..
T Consensus         5 p~~c~c~~~~~~C~~~-----------~L~-~lP-~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~   69 (305)
T d1xkua_           5 PFRCQCHLRVVQCSDL-----------GLE-KVP-KDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK   69 (305)
T ss_dssp             CTTCEEETTEEECTTS-----------CCC-SCC-CSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEecCCEEEecCC-----------CCC-ccC-CCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccc
Confidence            3445589999999642           222 344 222  2679999999999986666688999999999999999987


Q ss_pred             CCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCc--ccCCccc
Q 043943          122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLI--GSVPFFL  199 (775)
Q Consensus       122 ~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~  199 (775)
                      ..|..|.++++|++|++++|+++ .+|..+  ...++.|++.+|.+.+..+..+.....++.++...+...  ...+..+
T Consensus        70 i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~  146 (305)
T d1xkua_          70 ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF  146 (305)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred             cchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccc
Confidence            77888999999999999999888 445433  357788888888888777677777777788887776432  2334456


Q ss_pred             CCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCE
Q 043943          200 GNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN  279 (775)
Q Consensus       200 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  279 (775)
                      ..+++|+.+++++|.+... +..  .+++|++|++++|...+..+..+..++.+++|++++|.+++..+..+..+++|++
T Consensus       147 ~~l~~L~~l~l~~n~l~~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         147 QGMKKLSYIRIADTNITTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GGCTTCCEEECCSSCCCSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             ccccccCccccccCCcccc-Ccc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccccee
Confidence            6677777777777776643 222  2466777777777766666666666777777777777776666666666677777


Q ss_pred             EEcccCcccccCCccCCCCCCCCeeeccCccccCC
Q 043943          280 LDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGS  314 (775)
Q Consensus       280 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  314 (775)
                      |++++|+++ .+|.++..+++|++|++++|+++..
T Consensus       224 L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         224 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             EECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             eeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence            777777666 3355666666666666666666643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.6e-23  Score=213.69  Aligned_cols=267  Identities=22%  Similarity=0.274  Sum_probs=185.5

Q ss_pred             CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943           84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY  163 (775)
Q Consensus        84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~  163 (775)
                      ..+.++-++..++ .+|..+.  +++++|+|++|.++...+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4567777777777 4565553  578888888888885555678888888888888888887777788888888888888


Q ss_pred             cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCc--cccCccCCCCCCCCEEEcccccccc
Q 043943          164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS--GFIPSTLGKLKCLSNLNMSMNHLSG  241 (775)
Q Consensus       164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~  241 (775)
                      +|+++.....   ..+.++.|++..|.+....+..+.....++.++...+...  ...+..+..+++|+.+++.+|.+. 
T Consensus        88 ~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-  163 (305)
T d1xkua_          88 KNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  163 (305)
T ss_dssp             SSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence            8887754332   2346778888888777655556666777777777766532  334456677777777777777766 


Q ss_pred             cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943          242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN  321 (775)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  321 (775)
                      .+|..  .+++|+.|++++|..++..+..|..++.+++|++++|.+++..+.++..+++|++|+|++|.++ .+|.++..
T Consensus       164 ~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         164 TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence            33433  2467777777777777666777777777777777777777766777777777777777777776 34666777


Q ss_pred             CCCCCeeeCcCCcCcCccCCcC------CCCCcCcEEEccCCcCC
Q 043943          322 LKCLFDLELSMNNLTGVIPSSI------GNLRNLRLLYLYRNELS  360 (775)
Q Consensus       322 l~~L~~L~l~~n~l~~~~~~~~------~~~~~L~~L~l~~n~l~  360 (775)
                      +++|++|++++|+++......|      ...++|+.|++++|.+.
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            7777777777777765433222      23455666666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-23  Score=211.11  Aligned_cols=208  Identities=23%  Similarity=0.245  Sum_probs=173.9

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECC-CccccccCcccccCCCCCCEEE
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLY-SNCLNGSIPQSLGNLSKQSLLS  161 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~-~n~~~~~~~~~~~~l~~L~~L~  161 (775)
                      +++++|+|++|+++...+.+|.++++|++|++++|.+....+..+..+..+++++.. .+.+....+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            578999999999987777788999999999999999887777778888888888765 4556666677888889999999


Q ss_pred             cccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc
Q 043943          162 LYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG  241 (775)
Q Consensus       162 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  241 (775)
                      +++|.+....+..+..+++|+.+++++|.+++..+..|..+++|+.|++++|++++..+.+|.++++|+++++++|++.+
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            99888887777788888888888888888887667778888888888888888888888888888888888888888888


Q ss_pred             cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccccc
Q 043943          242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV  290 (775)
Q Consensus       242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  290 (775)
                      ..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+...
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            8888888888888888888888877777788888888888888877643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-23  Score=210.40  Aligned_cols=223  Identities=26%  Similarity=0.268  Sum_probs=110.5

Q ss_pred             EEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccC-C
Q 043943          111 YLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSL-N  189 (775)
Q Consensus       111 ~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n  189 (775)
                      .++.+++.++ .+|..+.  +.+++|+|++|+++...+..|.++++|++|++++|.+..+.+..+..++.++.++... +
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            3455555555 4454432  4566666666666644445566666666666666665555555555555555554432 2


Q ss_pred             cCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCc
Q 043943          190 QLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK  269 (775)
Q Consensus       190 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  269 (775)
                      .+....+..|.++++|++|++++|.+....+..+..                        +.+|+.+++++|.+++..+.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------------------------~~~L~~l~l~~N~l~~i~~~  147 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG------------------------LAALQYLYLQDNALQALPDD  147 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------------------CTTCCEEECCSSCCCCCCTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccch------------------------hcccchhhhccccccccChh
Confidence            233333334444444444444444444333333444                        44444444444444433334


Q ss_pred             cccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcC
Q 043943          270 EIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNL  349 (775)
Q Consensus       270 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  349 (775)
                      .|..+++|++|++++|.+++..+.+|.++++|+.+++.+|++++..|..|..+++|++|++++|++.+..+..|..+++|
T Consensus       148 ~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccccc
Confidence            44444444555555444444444444444445555555444444444444445555555555555544444444555555


Q ss_pred             cEEEccCCcCC
Q 043943          350 RLLYLYRNELS  360 (775)
Q Consensus       350 ~~L~l~~n~l~  360 (775)
                      +.|++++|++.
T Consensus       228 ~~L~l~~N~l~  238 (284)
T d1ozna_         228 QYLRLNDNPWV  238 (284)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEecCCCCC
Confidence            55555555444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-21  Score=194.94  Aligned_cols=203  Identities=26%  Similarity=0.232  Sum_probs=158.2

Q ss_pred             CCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEc
Q 043943          420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLIL  499 (775)
Q Consensus       420 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  499 (775)
                      ..+.+++.+++.++. +|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|+++.. + .+..+++|++|+|
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence            345556666666663 454442  4678888888888766666778888888888888887743 3 2467788888888


Q ss_pred             CCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcc
Q 043943          500 NKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEG  579 (775)
Q Consensus       500 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~  579 (775)
                      ++|++.+ .+..+..+++|+.|++++|.+....+..+..+.+++.|++++|.++...+..+..+. .++.+++++|++++
T Consensus        85 s~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~-~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-KLEKLSLANNNLTE  162 (266)
T ss_dssp             CSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCSC
T ss_pred             ccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccc-cchhcccccccccc
Confidence            8888873 456777888888888888888877777788888888888888888866666666666 88899999999988


Q ss_pred             cCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943          580 EIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP  630 (775)
Q Consensus       580 ~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p  630 (775)
                      ..+..|..+++|++|+|++|+++ .+|..+..+.+|+.|++++|++.|.|.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            88888889999999999999988 677777788999999999999887664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1e-20  Score=187.90  Aligned_cols=199  Identities=27%  Similarity=0.256  Sum_probs=100.6

Q ss_pred             CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943           81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL  160 (775)
Q Consensus        81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  160 (775)
                      +...+.+++.+++.++ .+|..+.  ++|++|+|++|.+++..+..|.++++|++|+|++|+++. +| .+..+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence            4445555666666666 3454442  356666666666664444556666666666666666652 22 23455555555


Q ss_pred             EcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943          161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS  240 (775)
Q Consensus       161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  240 (775)
                      ++++|+++.. +..+..+++|++|+++++.+....+..+..+.++++|++++|.+....+..+..+++|+.+++++|+++
T Consensus        83 ~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            5555555432 334445555555555555444444444444445555555555444444444444444444444444444


Q ss_pred             ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCc
Q 043943          241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINR  286 (775)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  286 (775)
                      +..+..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            444444444444444444444444 344444444444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=9.9e-16  Score=158.90  Aligned_cols=95  Identities=31%  Similarity=0.301  Sum_probs=57.0

Q ss_pred             CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCC-CCCCEEe
Q 043943          107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNL-ISLSTLD  185 (775)
Q Consensus       107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~  185 (775)
                      .+|++|||+++.++ .+|+.   +++|++|++++|+++ .+|..   +.+|+.|++++|.++...     .+ +.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~-----~lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALS-----DLPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC-----SCCTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhh-----hhcccccccc
Confidence            46888899888887 56643   567888888888887 55654   346677777777665321     11 2355555


Q ss_pred             ccCCcCcccCCcccCCCCCccEEEcccccCc
Q 043943          186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS  216 (775)
Q Consensus       186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  216 (775)
                      +++|.+. .+|. ++.+++|+.|+++++.+.
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-cccc-hhhhccceeecccccccc
Confidence            5555544 2232 344455555555544443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=9.9e-16  Score=158.91  Aligned_cols=138  Identities=26%  Similarity=0.228  Sum_probs=97.5

Q ss_pred             CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943           83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL  162 (775)
Q Consensus        83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  162 (775)
                      .++++|+|+++.++ .+|+.   .++|++|++++|.++ .+|..   ..+|+.|++++|+++ .++. +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            36889999999987 46653   578999999999998 56754   457899999999887 3332 1  146999999


Q ss_pred             ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943          163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS  240 (775)
Q Consensus       163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  240 (775)
                      ++|.+... | .+..+++|++|+++++.+.. .+.   ....+..+.+..+...  ....+..++.++.+++..|...
T Consensus       106 ~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         106 SNNQLEKL-P-ELQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCSSC-C-CCTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccc-c-chhhhccceeeccccccccc-ccc---ccccccchhhcccccc--ccccccccccceeccccccccc
Confidence            99998754 4 35788999999999887753 222   2345666766655443  2344566666777777666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.4e-17  Score=160.87  Aligned_cols=201  Identities=26%  Similarity=0.325  Sum_probs=92.7

Q ss_pred             EECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcC
Q 043943           88 LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL  167 (775)
Q Consensus        88 L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  167 (775)
                      ++++.+.+++..  .+..+.+|++|++.+|.++. ++ .+..+++|++|++++|.+++..|  +.++++|+++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            344444444322  23445555666666555553 22 35555666666666655553322  55555555555555554


Q ss_pred             cccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccc
Q 043943          168 SGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI  247 (775)
Q Consensus       168 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l  247 (775)
                      +..  ..+..+++|++++++.+...+..  .+...+.++.+.++++.+...  ..+..+++|++|++.+|.+.+.  ..+
T Consensus        98 ~~i--~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l  169 (227)
T d1h6ua2          98 KNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPL  169 (227)
T ss_dssp             SCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             ccc--ccccccccccccccccccccccc--hhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhh
Confidence            432  23445555555555555443211  233444555555555444322  2234444555555555444321  124


Q ss_pred             cCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeec
Q 043943          248 GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYL  306 (775)
Q Consensus       248 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  306 (775)
                      +++++|+.|++++|.+++. + .+..+++|++|++++|++++..  .++.+++|+.|++
T Consensus       170 ~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~l  224 (227)
T d1h6ua2         170 ANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL  224 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEE
T ss_pred             cccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEe
Confidence            4444555555555544421 1 2444455555555555444322  1344444444444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.3e-17  Score=161.24  Aligned_cols=198  Identities=17%  Similarity=0.084  Sum_probs=102.9

Q ss_pred             CCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccC-cccccCCCCCCEEEccc-CcCcccCCcccCCCCCCCEEec
Q 043943          109 LQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSI-PQSLGNLSKQSLLSLYN-NSLSGYIPPVIGNLISLSTLDL  186 (775)
Q Consensus       109 L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l  186 (775)
                      +++|++++|.++...+..|.++++|++|++++|.+...+ +..|.++++++++.+.. +.+....+..|.++++|++|++
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l  110 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  110 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccccc
Confidence            344444444443222223444444444444444433221 22344444444444432 3344444444555555555555


Q ss_pred             cCCcCcccCCc-ccCCCCCccEEEcccccCccccCccCCCCC-CCCEEEcccccccccCCccccCCCCCcEE-EcccccC
Q 043943          187 SLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLK-CLSNLNMSMNHLSGAIPSSIGNVRNLRSL-FLYSNEL  263 (775)
Q Consensus       187 ~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L-~l~~n~~  263 (775)
                      ++|.+....+. .+..+..+..+...++.+..+.+..|..++ .++.|++++|+++...+.. ....+++.+ .+.+|.+
T Consensus       111 ~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l  189 (242)
T d1xwdc1         111 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNL  189 (242)
T ss_dssp             ESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTC
T ss_pred             chhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccc-ccchhhhcccccccccc
Confidence            55554422221 223344555555555566655556665554 6777777777776444333 334444444 4566677


Q ss_pred             CCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeecc
Q 043943          264 SGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLY  307 (775)
Q Consensus       264 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  307 (775)
                      +...+..|.++++|++|++++|+++...+..|.++++|+.+++.
T Consensus       190 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            64444457778888888888888776555566666666665553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.5e-20  Score=198.63  Aligned_cols=111  Identities=18%  Similarity=0.041  Sum_probs=51.3

Q ss_pred             CCCCEEECCCCcccccCCc----cccCcCCCCEEEccCCcCccCCchhH----HhhhccccEEECcCCcCccc----CCc
Q 043943          516 TELELLDLSENRLSNAIPG----SLGNLLKVHYLNLSNNEFSHKIPTQF----EKLQLQLSELDLSQNFLEGE----IPS  583 (775)
Q Consensus       516 ~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~~L~~L~Ls~n~l~~~----~p~  583 (775)
                      ..|+.+++++|.++.....    .+...++|++|+|++|++++.....+    ......|++|+|++|+++..    ++.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            3455555555554432211    12233455555555555543222222    11112455666666655432    233


Q ss_pred             cccCCCCCcEEeCCCCcCcccCCcc----cc-CCCCCCEEeCCCCccc
Q 043943          584 QICNMESLVKLNLSYNQLSGFIPNC----FE-DMHGLSSIDISYNRLQ  626 (775)
Q Consensus       584 ~l~~l~~L~~L~ls~n~l~~~~p~~----l~-~l~~L~~l~ls~n~l~  626 (775)
                      .+..+++|++|+|++|+++......    +. +...|+.+++.+|.+.
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            4445566666666666655432221    21 2235666666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6.8e-17  Score=155.92  Aligned_cols=190  Identities=25%  Similarity=0.337  Sum_probs=154.8

Q ss_pred             cCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCC
Q 043943           79 FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS  158 (775)
Q Consensus        79 ~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~  158 (775)
                      +..+.+|+.|++.+|.++..  ..+.++++|++|++++|.+.+..|  +..+++|+++++++|.++. + ..+.++++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~  110 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-cccccccccc
Confidence            45677899999999998853  358899999999999999885433  8899999999999998874 3 3588999999


Q ss_pred             EEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccc
Q 043943          159 LLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH  238 (775)
Q Consensus       159 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  238 (775)
                      +++++++...+.  ..+...+.++.+.++.+.+....  .+..+++|+.|++++|.+...  ..+.++++|++|++++|+
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNK  184 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             cccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecccCCCc
Confidence            999998877654  34677889999999988776433  367788999999999988754  348899999999999999


Q ss_pred             ccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEccc
Q 043943          239 LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSI  284 (775)
Q Consensus       239 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  284 (775)
                      +++. + .++.+++|++|++++|++++. + .+.++++|++|++++
T Consensus       185 l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 ISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             cCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            8753 3 488899999999999999854 3 388999999999864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.5e-20  Score=197.72  Aligned_cols=382  Identities=20%  Similarity=0.151  Sum_probs=236.4

Q ss_pred             CCCCEEEcccccccccC-CccccCCCCCcEEEcccccCCC----CCCccccCCCCCCEEEcccCcccccC----CccCC-
Q 043943          227 KCLSNLNMSMNHLSGAI-PSSIGNVRNLRSLFLYSNELSG----SIPKEIGNLRSLSNLDLSINRLNGVI----PSSIG-  296 (775)
Q Consensus       227 ~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~-  296 (775)
                      .+|++|+++++++++.. ...+..++++++|+|++|.++.    .+...+..+++|++|||++|.++...    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36889999999987542 2335668899999999998874    23445678899999999999886321    22232 


Q ss_pred             CCCCCCeeeccCccccCC----CCccCCCCCCCCeeeCcCCcCcCccCCcC-----CCCCcCcEEEccCCcCCCC----c
Q 043943          297 NSNNLSILYLYSNQLSGS----IPKEIGNLKCLFDLELSMNNLTGVIPSSI-----GNLRNLRLLYLYRNELSGS----I  363 (775)
Q Consensus       297 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~  363 (775)
                      ...+|++|++++|++++.    ++..+..+++|++|++++|.+.......+     ...................    .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            235799999999988753    34456778899999999988764321111     1122333444443332211    1


Q ss_pred             hhhccCCCCCcEEEeccceecccC----CccC-cCCCcccceeccccccccccch---hhhccCCCCcEEeCCCcccee-
Q 043943          364 PQAIGNLVELVSLLLGFNYFRGPI----PKNF-KNLTNLVRVRMNQNNLSGNISE---AFVGTYPTLSFLDLSHNNFHG-  434 (775)
Q Consensus       364 ~~~~~~l~~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~-  434 (775)
                      ...+.....++.+.++.+......    ...+ ........+.+..+.+......   ......+.++.+++.+|.+.. 
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            122334566777777766543210    0001 1112344566666554432211   122456788888888876532 


Q ss_pred             ----ecCcCcCCCCCCCEEEcccCccccc----CCccccCCCCCcEEEccCCCccCcCChhh-----hcCCCCCEEEcCC
Q 043943          435 ----QISSDWGRFPQLGTLDFSVNNITGS----IPPEIGNSSKLQVLNLSSNHIGGKIPMEL-----GRLSSLNKLILNK  501 (775)
Q Consensus       435 ----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~  501 (775)
                          ...........++.+++++|.+...    ....+...+.++.+++++|.+.+.....+     .....|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                1223345567888889888877643    22345667888888998888764332222     2346788889988


Q ss_pred             CcCcccCCc----CccCCCCCCEEECCCCccccc----CCccc-cCcCCCCEEEccCCcCccCC----chhHHhhhcccc
Q 043943          502 NQLFGSLPP----EIGTLTELELLDLSENRLSNA----IPGSL-GNLLKVHYLNLSNNEFSHKI----PTQFEKLQLQLS  568 (775)
Q Consensus       502 n~~~~~~~~----~~~~l~~L~~L~ls~n~l~~~----~~~~~-~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~~L~  568 (775)
                      |.++.....    .+...++|++|+|++|++++.    ++..+ ...+.|++|+|++|.++...    ...+...+ +|+
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~  400 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH-SLR  400 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC-CCC
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCC-CCC
Confidence            887654322    234567888999998888643    12222 24567888999998887532    23344445 888


Q ss_pred             EEECcCCcCcccCCccc----c-CCCCCcEEeCCCCcCcccCCccc
Q 043943          569 ELDLSQNFLEGEIPSQI----C-NMESLVKLNLSYNQLSGFIPNCF  609 (775)
Q Consensus       569 ~L~Ls~n~l~~~~p~~l----~-~l~~L~~L~ls~n~l~~~~p~~l  609 (775)
                      +|+|++|+++......|    . ....|+.|++++|.+....+..+
T Consensus       401 ~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             EEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            99999998875433333    2 34478889998888876554443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.8e-17  Score=156.74  Aligned_cols=218  Identities=16%  Similarity=0.134  Sum_probs=99.5

Q ss_pred             CEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccC-CcccCCCCCCCEEeccC
Q 043943          110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYI-PPVIGNLISLSTLDLSL  188 (775)
Q Consensus       110 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~  188 (775)
                      ++++.++..++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+...+ +..|..+++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45666666555 4454332  35666666666665443445555666666666655554322 33444455555544432


Q ss_pred             -CcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCC
Q 043943          189 -NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI  267 (775)
Q Consensus       189 -n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  267 (775)
                       +.+....+..|.++++|+++++++|.+....+  +.                     .+..+..+..+...++.+....
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~---------------------~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VH---------------------KIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CT---------------------TTCBSSCEEEEEESCTTCCEEC
T ss_pred             cccccccccccccccccccccccchhhhccccc--cc---------------------cccccccccccccccccccccc
Confidence             23333333334444444444444444332211  11                     1122233333333333443333


Q ss_pred             CccccCCC-CCCEEEcccCcccccCCccCCCCCCCCe-eeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCC
Q 043943          268 PKEIGNLR-SLSNLDLSINRLNGVIPSSIGNSNNLSI-LYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGN  345 (775)
Q Consensus       268 ~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  345 (775)
                      +..|..++ .++.|++++|+++...+..+. ..++++ +.+.+|+++...+..|.++++|++|++++|+++...+..|.+
T Consensus       145 ~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  223 (242)
T d1xwdc1         145 RNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  223 (242)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred             ccccccccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence            33333332 455555555555543333332 223322 234445555333344555666666666666665444444444


Q ss_pred             CCcCcEEEc
Q 043943          346 LRNLRLLYL  354 (775)
Q Consensus       346 ~~~L~~L~l  354 (775)
                      +++|+.+++
T Consensus       224 l~~L~~l~~  232 (242)
T d1xwdc1         224 LKKLRARST  232 (242)
T ss_dssp             CCEEESSSE
T ss_pred             CcccccCcC
Confidence            444444433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.6e-16  Score=146.29  Aligned_cols=148  Identities=30%  Similarity=0.369  Sum_probs=64.9

Q ss_pred             CCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEE
Q 043943          105 QLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTL  184 (775)
Q Consensus       105 ~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  184 (775)
                      .+.+|++|++++|.+.. + ..++.+++|++|++++|++++..|  +.++++|++|++++|.+....  .+.++++|++|
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccc
Confidence            34455555555555542 2 124455555555555555543221  445555555555554443321  24444455555


Q ss_pred             eccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCC
Q 043943          185 DLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS  264 (775)
Q Consensus       185 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  264 (775)
                      +++++.....  ..+..+++|+.|++++|.+...  ..+..+++|++|++.+|.+++.  ..++++++|++|++++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence            5544443321  1234444444444444444321  2244444444444444444321  12334444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=4.8e-17  Score=152.17  Aligned_cols=130  Identities=24%  Similarity=0.302  Sum_probs=93.4

Q ss_pred             cEEeCCCccceeecCcCcCCCCCCCEEEcccCccccc-CCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCC
Q 043943          423 SFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGS-IPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNK  501 (775)
Q Consensus       423 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  501 (775)
                      ++++.++++++ .+|..+  .+++++|+|++|+|++. .+..|..+++|++|++++|.+....+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            46777777776 345443  25777777777777653 345567777777777777777777777777777777777777


Q ss_pred             CcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccC
Q 043943          502 NQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHK  555 (775)
Q Consensus       502 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  555 (775)
                      |++....+..|.++++|++|+|++|+++++.+++|..+++|++|+|++|.+...
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            777766666777777777777777777777777777777777777777776543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.3e-16  Score=148.62  Aligned_cols=79  Identities=23%  Similarity=0.252  Sum_probs=33.2

Q ss_pred             CCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943          106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD  185 (775)
Q Consensus       106 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  185 (775)
                      +.+|++|++++|.+... + .+..+++|++|++++|.+++. + .+.++++|++|++++|++++. + .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccc-c-cccccccccccc
Confidence            33444555555444422 1 244444555555555544432 1 233444444444444444322 1 233444444444


Q ss_pred             ccCCc
Q 043943          186 LSLNQ  190 (775)
Q Consensus       186 l~~n~  190 (775)
                      +++|.
T Consensus       119 l~~~~  123 (210)
T d1h6ta2         119 LEHNG  123 (210)
T ss_dssp             CTTSC
T ss_pred             ccccc
Confidence            44443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=4.8e-16  Score=147.45  Aligned_cols=165  Identities=30%  Similarity=0.338  Sum_probs=117.4

Q ss_pred             CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943           81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL  160 (775)
Q Consensus        81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  160 (775)
                      .+..|++|++++|.+++..  .+..+++|++|++++|.+++. + .++.+++|++|++++|++++ +| .+.++++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccc
Confidence            4567888899988887532  477889999999999988853 3 36788899999999998874 44 58888999999


Q ss_pred             EcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943          161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS  240 (775)
Q Consensus       161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  240 (775)
                      ++++|.+...  ..+..+++++.+++++|.+++  +..+..+++|+++++++|++++..  .+.++++|++|++++|.++
T Consensus       118 ~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--ccccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCC
Confidence            9988887643  357777888888888887653  223556677777777777766432  3666666666666666665


Q ss_pred             ccCCccccCCCCCcEEEcc
Q 043943          241 GAIPSSIGNVRNLRSLFLY  259 (775)
Q Consensus       241 ~~~~~~l~~l~~L~~L~l~  259 (775)
                      . ++ .+..+++|++|+++
T Consensus       192 ~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         192 D-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             B-CG-GGTTCTTCSEEEEE
T ss_pred             C-Ch-hhcCCCCCCEEEcc
Confidence            3 22 35566666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=3.2e-16  Score=146.45  Aligned_cols=177  Identities=25%  Similarity=0.290  Sum_probs=127.1

Q ss_pred             CCEEEcccCcccccCCccccCCCCCcEEEccCCCccCc-CChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECC
Q 043943          446 LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGK-IPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLS  524 (775)
Q Consensus       446 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls  524 (775)
                      .+.++.++++++ .+|..+.  +++++|+|++|+++.. .+..|..+++|+.|+|++|++....+..+..+++|++|+|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            356777777777 4565442  5788888888888653 35566778888888888888887777788888888888888


Q ss_pred             CCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCccc
Q 043943          525 ENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGF  604 (775)
Q Consensus       525 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~  604 (775)
                      +|++..+.+.+|.++++|++|+|++|+|++..+..|..++ +|++|+|++|.+....+..+ -...++.+.+..+.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~-~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCc-ccccccccccccccccchHH-HhhhhhhhcccCCCeEeC
Confidence            8888877777888888888888888888877777777777 88888888887764332211 112345556667777666


Q ss_pred             CCccccCCCCCCEEeCCCCcccccCC
Q 043943          605 IPNCFEDMHGLSSIDISYNRLQGPVP  630 (775)
Q Consensus       605 ~p~~l~~l~~L~~l~ls~n~l~~~~p  630 (775)
                      .|..+   ..++.++++.|.+.+..+
T Consensus       165 ~p~~l---~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         165 APSKV---RDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             SSTTT---TTSBGGGSCTTTCCCCCC
T ss_pred             CChhh---cCCEeeecCHhhCcCCCC
Confidence            66544   445677888888877555

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.2e-15  Score=143.47  Aligned_cols=163  Identities=27%  Similarity=0.407  Sum_probs=126.8

Q ss_pred             CCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCE
Q 043943           80 SSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSL  159 (775)
Q Consensus        80 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  159 (775)
                      ..++++++|+++++.++..  +.++.+++|++|++++|.+++..|  +.++++|++|++++|.+.. ++ .+.++++|+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccc
Confidence            3466888888888888743  347788899999999988885432  8888899999998888763 33 4788889999


Q ss_pred             EEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccc
Q 043943          160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL  239 (775)
Q Consensus       160 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  239 (775)
                      |+++++.....  ..+..+++|+.|++++|.+.. + ..+..+++|+.|++.+|.+++.  ..+.++++|++|++++|++
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            99988877654  347788899999999988763 3 3477888999999999988865  3488899999999999988


Q ss_pred             cccCCccccCCCCCcEE
Q 043943          240 SGAIPSSIGNVRNLRSL  256 (775)
Q Consensus       240 ~~~~~~~l~~l~~L~~L  256 (775)
                      ++ ++ .++.+++|++|
T Consensus       185 ~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         185 SD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CC-CG-GGGGCTTCSEE
T ss_pred             CC-Cc-cccCCCCCCcC
Confidence            74 33 47778888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.7e-15  Score=150.85  Aligned_cols=84  Identities=15%  Similarity=0.173  Sum_probs=41.7

Q ss_pred             CcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccC-ccccc-CCccccCCCCCcE
Q 043943          395 TNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVN-NITGS-IPPEIGNSSKLQV  472 (775)
Q Consensus       395 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~  472 (775)
                      .+|++|+++++.+.......++..+++|++|++++|.+.+.....+..+++|++|++++| .++.. +......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            455555555555544433334455556666666655555444444555555555555554 23211 1112234555555


Q ss_pred             EEccCC
Q 043943          473 LNLSSN  478 (775)
Q Consensus       473 L~Ls~n  478 (775)
                      |++++|
T Consensus       126 L~ls~c  131 (284)
T d2astb2         126 LNLSWC  131 (284)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7e-16  Score=153.78  Aligned_cols=58  Identities=29%  Similarity=0.292  Sum_probs=28.3

Q ss_pred             CCCCEEeCcCCCCCCC-CchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943          107 FKLQYLDLSANKLSGK-IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN  164 (775)
Q Consensus       107 ~~L~~L~ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~  164 (775)
                      .+|++||+++|.+... ++..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            4555555555544322 222344555555555555555444444444555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.4e-14  Score=126.77  Aligned_cols=85  Identities=21%  Similarity=0.086  Sum_probs=35.0

Q ss_pred             CCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCE
Q 043943           80 SSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSL  159 (775)
Q Consensus        80 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  159 (775)
                      .++..+++|+|++|+|+.+ +..+..+++|++|++++|.++. ++ .|..+++|++|++++|.++...+..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            3344444444444444422 3333344444444444444442 11 2444444444444444444322222333444444


Q ss_pred             EEcccCcC
Q 043943          160 LSLYNNSL  167 (775)
Q Consensus       160 L~l~~n~~  167 (775)
                      |++++|.+
T Consensus        92 L~L~~N~i   99 (162)
T d1a9na_          92 LILTNNSL   99 (162)
T ss_dssp             EECCSCCC
T ss_pred             ceeccccc
Confidence            44444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-13  Score=123.39  Aligned_cols=128  Identities=19%  Similarity=0.139  Sum_probs=65.0

Q ss_pred             ccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCC
Q 043943          464 IGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVH  543 (775)
Q Consensus       464 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  543 (775)
                      +.++.++++|+|++|+++.. +..+..+++|+.|+|++|+++..  +.+..+++|++|++++|+++...+..+..++   
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~---   87 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP---   87 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT---
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccc---
Confidence            44555566666666665532 33344555555555555555422  2344455555555555555444333334444   


Q ss_pred             EEEccCCcCccCCchhHHhhhccccEEECcCCcCcccC-CccccCCCCCcEEeCCCCcCcccC---CccccCCCCCCEEe
Q 043943          544 YLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEI-PSQICNMESLVKLNLSYNQLSGFI---PNCFEDMHGLSSID  619 (775)
Q Consensus       544 ~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~---p~~l~~l~~L~~l~  619 (775)
                                            +|+.|++++|+++... ...+..+++|+.|++++|+++...   +..+..+++|+.||
T Consensus        88 ----------------------~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 ----------------------DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ----------------------TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ----------------------ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence                                  4555555555444211 134555666666666666665432   12355566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.4e-13  Score=115.64  Aligned_cols=102  Identities=29%  Similarity=0.364  Sum_probs=66.7

Q ss_pred             CEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccC
Q 043943           86 LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNN  165 (775)
Q Consensus        86 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n  165 (775)
                      |+|++++|+++. ++ .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++. +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            567777777763 33 3677777777777777776 456567777777777777777763 33 4666777777777777


Q ss_pred             cCcccC-CcccCCCCCCCEEeccCCcCc
Q 043943          166 SLSGYI-PPVIGNLISLSTLDLSLNQLI  192 (775)
Q Consensus       166 ~~~~~~-~~~l~~l~~L~~L~l~~n~~~  192 (775)
                      .++... ...+..+++|++|++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            666443 244566666666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.7e-14  Score=148.58  Aligned_cols=243  Identities=17%  Similarity=0.212  Sum_probs=116.9

Q ss_pred             hhccCCCCCcEEEeccceeccc----CCccCcCCCcccceecccccccccc---chhhhccCCCCcEEeCCCccceeecC
Q 043943          365 QAIGNLVELVSLLLGFNYFRGP----IPKNFKNLTNLVRVRMNQNNLSGNI---SEAFVGTYPTLSFLDLSHNNFHGQIS  437 (775)
Q Consensus       365 ~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~  437 (775)
                      ..+.+...++.|++++|.+...    +...+...++|+.++++++......   +...                  ..+.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~------------------~~l~   86 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL------------------RLLL   86 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH------------------HHHH
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHH------------------HHHH
Confidence            4455667777787777776432    2233455566666666655332111   0000                  0011


Q ss_pred             cCcCCCCCCCEEEcccCccccc----CCccccCCCCCcEEEccCCCccCcCCh-------------hhhcCCCCCEEEcC
Q 043943          438 SDWGRFPQLGTLDFSVNNITGS----IPPEIGNSSKLQVLNLSSNHIGGKIPM-------------ELGRLSSLNKLILN  500 (775)
Q Consensus       438 ~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~-------------~l~~l~~L~~L~L~  500 (775)
                      ..+..+++|+.|++++|.++..    +...+..+++|++|++++|.+......             .....+.|+.+.++
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc
Confidence            1223344455555555444332    122233445555555555544311100             01234555556665


Q ss_pred             CCcCcccC----CcCccCCCCCCEEECCCCccccc-----CCccccCcCCCCEEEccCCcCccCCc----hhHHhhhccc
Q 043943          501 KNQLFGSL----PPEIGTLTELELLDLSENRLSNA-----IPGSLGNLLKVHYLNLSNNEFSHKIP----TQFEKLQLQL  567 (775)
Q Consensus       501 ~n~~~~~~----~~~~~~l~~L~~L~ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~~L  567 (775)
                      +|++....    ...+..++.|++|++++|.+...     ....+..+++|+.|+|++|.++....    ..+...+ +|
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~-~L  245 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NL  245 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TC
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccc-cc
Confidence            55543221    11233445566666666655421     12234455566666666666543221    2222333 56


Q ss_pred             cEEECcCCcCcccCCc----ccc--CCCCCcEEeCCCCcCcccC----Ccccc-CCCCCCEEeCCCCccc
Q 043943          568 SELDLSQNFLEGEIPS----QIC--NMESLVKLNLSYNQLSGFI----PNCFE-DMHGLSSIDISYNRLQ  626 (775)
Q Consensus       568 ~~L~Ls~n~l~~~~p~----~l~--~l~~L~~L~ls~n~l~~~~----p~~l~-~l~~L~~l~ls~n~l~  626 (775)
                      ++|+|++|.+++.-..    .+.  ..+.|++|++++|.+....    ...+. +.+.|+.|++++|++.
T Consensus       246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            6666666666543222    222  2356777777777765432    22332 4567788888887764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=9e-15  Score=150.66  Aligned_cols=91  Identities=15%  Similarity=0.076  Sum_probs=54.3

Q ss_pred             ccCCCCCCCEEECCCCCCccc----CcccccCCCCCCEEeCcCCCCCCC----------CchhccCCCCCCEEECCCccc
Q 043943           78 SFSSFPDLLFLNLFNNELFGI----IPPQISQLFKLQYLDLSANKLSGK----------IPPEIGQLSFLSELSLYSNCL  143 (775)
Q Consensus        78 ~~~~l~~L~~L~ls~~~~~~~----~~~~~~~l~~L~~L~ls~n~~~~~----------~p~~~~~l~~L~~L~L~~n~~  143 (775)
                      .+.....|+.|+|++|.+...    +...+...++|+.|+++++.....          +...+..+++|++|+|++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            445567788888888776543    233456667788888776644311          112245567777777777766


Q ss_pred             ccc----CcccccCCCCCCEEEcccCcCc
Q 043943          144 NGS----IPQSLGNLSKQSLLSLYNNSLS  168 (775)
Q Consensus       144 ~~~----~~~~~~~l~~L~~L~l~~n~~~  168 (775)
                      ...    +...+..+++|++|++++|.+.
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             ccccccchhhhhcccccchheeccccccc
Confidence            543    2223445666777777666553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=3.8e-13  Score=114.40  Aligned_cols=102  Identities=30%  Similarity=0.343  Sum_probs=68.4

Q ss_pred             CEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCC
Q 043943          110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLN  189 (775)
Q Consensus       110 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  189 (775)
                      |+|+|++|.++ .++ .++.+++|++|++++|.++ .+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCCC
Confidence            57788888887 344 3777888888888888877 4566777777777777777777654  23666677777777777


Q ss_pred             cCcccCC-cccCCCCCccEEEcccccCc
Q 043943          190 QLIGSVP-FFLGNLTNLVTLHLFNNSLS  216 (775)
Q Consensus       190 ~~~~~~~-~~~~~l~~L~~L~l~~n~l~  216 (775)
                      ++..... ..+..+++|++|++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            6653321 34555666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=7.3e-13  Score=123.20  Aligned_cols=130  Identities=21%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             CChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhh
Q 043943          484 IPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL  563 (775)
Q Consensus       484 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  563 (775)
                      ++..+..+++|++|+|++|+++. ++ .+..+++|+.|++++|.++. +|..+..+++|+.|++++|+++..  ..+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccc
Confidence            34556667777777777777663 33 46667777777777777763 344444556788888888887642  346677


Q ss_pred             hccccEEECcCCcCcccCC-ccccCCCCCcEEeCCCCcCcccCCcc----------ccCCCCCCEEe
Q 043943          564 QLQLSELDLSQNFLEGEIP-SQICNMESLVKLNLSYNQLSGFIPNC----------FEDMHGLSSID  619 (775)
Q Consensus       564 ~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~----------l~~l~~L~~l~  619 (775)
                      + +|+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       115 ~-~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 V-NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             H-HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             c-cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7 88888888888874322 46778888888888888877654432          45677888877

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=1.8e-13  Score=127.41  Aligned_cols=87  Identities=24%  Similarity=0.246  Sum_probs=38.9

Q ss_pred             cccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCC
Q 043943          100 PPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLI  179 (775)
Q Consensus       100 ~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~  179 (775)
                      +..+..+++|++|+|++|.++. ++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++..  ..+..++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccc
Confidence            3445555555555555555542 22 2445555555555555554 2232233333444444444444432  1233334


Q ss_pred             CCCEEeccCCcC
Q 043943          180 SLSTLDLSLNQL  191 (775)
Q Consensus       180 ~L~~L~l~~n~~  191 (775)
                      +|++|++++|.+
T Consensus       116 ~L~~L~L~~N~i  127 (198)
T d1m9la_         116 NLRVLYMSNNKI  127 (198)
T ss_dssp             HSSEEEESEEEC
T ss_pred             cccccccccchh
Confidence            444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.5e-11  Score=103.85  Aligned_cols=106  Identities=21%  Similarity=0.175  Sum_probs=65.1

Q ss_pred             CCEEEcccCcccccCCccccCCCCCcEEEccCC-CccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECC
Q 043943          446 LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN-HIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLS  524 (775)
Q Consensus       446 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls  524 (775)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|+|++|+++...+..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555444 34455556666666666544 3555555556666777777777777666556666677777777777


Q ss_pred             CCcccccCCccccCcCCCCEEEccCCcCc
Q 043943          525 ENRLSNAIPGSLGNLLKVHYLNLSNNEFS  553 (775)
Q Consensus       525 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  553 (775)
                      +|+++...+..|..+ .|+.|+|++|++.
T Consensus        89 ~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccc-cccccccCCCccc
Confidence            777765544445433 5777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.2e-11  Score=105.58  Aligned_cols=110  Identities=19%  Similarity=0.190  Sum_probs=71.8

Q ss_pred             CCEEECCCCcccccCCccccCcCCCCEEEccCC-cCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeC
Q 043943          518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN-EFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNL  596 (775)
Q Consensus       518 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l  596 (775)
                      .+.++.+++.+.. .|..+..+++|++|++++| .++...+..|..++ +|+.|++++|+++...+..|..+++|++|+|
T Consensus        10 ~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhcccc-ccCcceeeccccCCcccccccccccccceec
Confidence            3445555555542 3444555566666666544 35544445555555 6777777777777666777888888888888


Q ss_pred             CCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943          597 SYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP  630 (775)
Q Consensus       597 s~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p  630 (775)
                      ++|+++...+..|..+ .|+.|++++|++.+.+.
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGG
T ss_pred             cCCCCcccChhhhccc-cccccccCCCcccCCch
Confidence            8888886666666554 68888888888876554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.4e-08  Score=87.71  Aligned_cols=40  Identities=28%  Similarity=0.282  Sum_probs=16.1

Q ss_pred             CCCCCCEEeCcCCCCCCC--CchhccCCCCCCEEECCCcccc
Q 043943          105 QLFKLQYLDLSANKLSGK--IPPEIGQLSFLSELSLYSNCLN  144 (775)
Q Consensus       105 ~l~~L~~L~ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~  144 (775)
                      .+++|++|+|++|.++..  ++..+..+++|++|++++|.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            344444444444444322  1122333444444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=6.7e-08  Score=85.74  Aligned_cols=82  Identities=29%  Similarity=0.226  Sum_probs=42.6

Q ss_pred             cCcCCCCEEEccCCcCccCC--chhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCc-------
Q 043943          537 GNLLKVHYLNLSNNEFSHKI--PTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPN-------  607 (775)
Q Consensus       537 ~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~-------  607 (775)
                      ..++.|++|+|++|+++...  +..+..++ +|+.|++++|.++...+-.+.....|+.|++++|+++.....       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~-~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHST-TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCC-cccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            34555555555555555432  23344444 566666666666533332333344566666666666554332       


Q ss_pred             cccCCCCCCEEe
Q 043943          608 CFEDMHGLSSID  619 (775)
Q Consensus       608 ~l~~l~~L~~l~  619 (775)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            234566666665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.63  E-value=2.4e-05  Score=69.02  Aligned_cols=59  Identities=22%  Similarity=0.319  Sum_probs=33.6

Q ss_pred             cccEEECcCCcCccc----CCccccCCCCCcEEeCCCCcCccc-------CCccccCCCCCCEEeCCCCc
Q 043943          566 QLSELDLSQNFLEGE----IPSQICNMESLVKLNLSYNQLSGF-------IPNCFEDMHGLSSIDISYNR  624 (775)
Q Consensus       566 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~-------~p~~l~~l~~L~~l~ls~n~  624 (775)
                      .|++|+|++|.++..    +-..+...++|++|++++|.+...       +...+...++|+.|+++++.
T Consensus        73 ~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          73 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            455555555544432    223445567777888877765432       23444556778888776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.61  E-value=2e-05  Score=69.63  Aligned_cols=86  Identities=16%  Similarity=0.052  Sum_probs=44.7

Q ss_pred             CCCCCCEEECCCC-CCccc----CcccccCCCCCCEEeCcCCCCCCC----CchhccCCCCCCEEECCCccccccC----
Q 043943           81 SFPDLLFLNLFNN-ELFGI----IPPQISQLFKLQYLDLSANKLSGK----IPPEIGQLSFLSELSLYSNCLNGSI----  147 (775)
Q Consensus        81 ~l~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~~----  147 (775)
                      +.+.|++|+|+++ .+...    +...+...++|++|+|++|.+...    +...+...+.|++|+|++|.+....    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4466777777653 34332    233455666677777777665422    2222344566666666666654321    


Q ss_pred             cccccCCCCCCEEEcccCc
Q 043943          148 PQSLGNLSKQSLLSLYNNS  166 (775)
Q Consensus       148 ~~~~~~l~~L~~L~l~~n~  166 (775)
                      ..++...+.|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            1233444455555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.99  E-value=0.00011  Score=64.74  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=34.0

Q ss_pred             CCCCCCEEECCC-CCCccc----CcccccCCCCCCEEeCcCCCCCCC----CchhccCCCCCCEEECCCcccc
Q 043943           81 SFPDLLFLNLFN-NELFGI----IPPQISQLFKLQYLDLSANKLSGK----IPPEIGQLSFLSELSLYSNCLN  144 (775)
Q Consensus        81 ~l~~L~~L~ls~-~~~~~~----~~~~~~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~  144 (775)
                      +.+.|++|++++ +.++..    +..++...++|++|++++|.+...    +-..+...+.++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            445666666665 334322    223445566666666666655432    1122344556666666666554

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00021  Score=70.08  Aligned_cols=34  Identities=32%  Similarity=0.489  Sum_probs=26.1

Q ss_pred             hcccccceEeecCCCCcEEEEEeCCC----CEEEEEEccC
Q 043943          737 TNDFDEEYCIGKGAQGSLYKAKLQSE----DLIAVKKFNS  772 (775)
Q Consensus       737 T~~f~~~~~iG~Gg~G~VYkg~l~~g----~~vAVK~l~~  772 (775)
                      +-+|+  ++||+|+||+||||.+.++    ..||||+++.
T Consensus        28 ~~~~~--~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~   65 (311)
T d1r0pa_          28 IVHFN--EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR   65 (311)
T ss_dssp             EEEEE--EEEEEETTEEEEEEEECC----CEEEEEEEECC
T ss_pred             eeccc--eEEeecCCeEEEEEEEECCCCEEEEEEEEEECc
Confidence            34554  5699999999999998542    2699999864

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.79  E-value=8.5e-05  Score=65.42  Aligned_cols=68  Identities=12%  Similarity=0.113  Sum_probs=39.1

Q ss_pred             ccccCCCCCCEEeCcC-CCCCCC----CchhccCCCCCCEEECCCccccccCc----ccccCCCCCCEEEcccCcCc
Q 043943          101 PQISQLFKLQYLDLSA-NKLSGK----IPPEIGQLSFLSELSLYSNCLNGSIP----QSLGNLSKQSLLSLYNNSLS  168 (775)
Q Consensus       101 ~~~~~l~~L~~L~ls~-n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~  168 (775)
                      ....+.+.|++|++++ +.++..    +-..+...++|++|++++|.+.....    ..+...+.++.+++++|.+.
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3345667888888876 344322    22234567777777777776653222    23344556666666665554

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00029  Score=69.17  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=27.3

Q ss_pred             cccceEeecCCCCcEEEEEe------CCCCEEEEEEccCC
Q 043943          740 FDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNSQ  773 (775)
Q Consensus       740 f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~~  773 (775)
                      +.-.++||+|+||.||+|++      .+++.||||+++..
T Consensus        25 ~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~   64 (311)
T d1t46a_          25 LSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPS   64 (311)
T ss_dssp             EEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT
T ss_pred             eEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcc
Confidence            44456799999999999986      35678999999753

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.0007  Score=65.77  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=27.2

Q ss_pred             cccccceEeecCCCCcEEEEEeC-CCC---EEEEEEccCC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKLQ-SED---LIAVKKFNSQ  773 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~---~vAVK~l~~~  773 (775)
                      +.|.-.++||+|+||+||+|... +|+   .||||++...
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~   65 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG   65 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSS
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcc
Confidence            34666788999999999999984 332   6999998653

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=96.45  E-value=0.00066  Score=67.11  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      ++|.--.+||+|+||+||+|+- .+|+.||||+++.
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~   70 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP   70 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECH
Confidence            3566678899999999999986 4789999999864

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.00091  Score=66.49  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=28.5

Q ss_pred             ccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943          739 DFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN  771 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~  771 (775)
                      +|.--++||+|+||.||+|.- .+|+.||||++.
T Consensus        42 ~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~   75 (350)
T d1rdqe_          42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILD   75 (350)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred             CeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEc
Confidence            466667899999999999987 479999999974

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=96.25  E-value=0.0009  Score=66.52  Aligned_cols=34  Identities=21%  Similarity=0.247  Sum_probs=28.9

Q ss_pred             ccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      .|.-.++||+|+||+||+|.- .+|+.||||+++.
T Consensus        30 ~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~   64 (352)
T d1koba_          30 YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINT   64 (352)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECC
Confidence            466667899999999999985 5799999999864

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0012  Score=64.79  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=28.3

Q ss_pred             cccccceEeecCCCCcEEEEEe----CCCCEEEEEEcc
Q 043943          738 NDFDEEYCIGKGAQGSLYKAKL----QSEDLIAVKKFN  771 (775)
Q Consensus       738 ~~f~~~~~iG~Gg~G~VYkg~l----~~g~~vAVK~l~  771 (775)
                      ++|.--++||+|+||+||+|.-    .+|+.||||.++
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~   61 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLK   61 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEES
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEe
Confidence            4477778899999999999974    258999999874

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=96.19  E-value=0.001  Score=66.03  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=28.8

Q ss_pred             ccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~  772 (775)
                      +|.-.++||+|+||.||+|.- .+|+.||||++..
T Consensus        27 ~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~   61 (350)
T d1koaa2          27 HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMT   61 (350)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECC
T ss_pred             CeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcc
Confidence            455567899999999999986 4799999999854

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0016  Score=63.96  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=26.8

Q ss_pred             ccccceEeecCCCCcEEEEEeCC-C-----CEEEEEEccC
Q 043943          739 DFDEEYCIGKGAQGSLYKAKLQS-E-----DLIAVKKFNS  772 (775)
Q Consensus       739 ~f~~~~~iG~Gg~G~VYkg~l~~-g-----~~vAVK~l~~  772 (775)
                      +|.-.++||+|+||+||+|+..+ +     ..||||++..
T Consensus        38 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~   77 (325)
T d1rjba_          38 NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKE   77 (325)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC
T ss_pred             HeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEecc
Confidence            46666889999999999999742 2     3699999854