Citrus Sinensis ID: 043949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MGTSSNWFNVLRRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLLPLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQLEL
Secondary Structure (PSIPRED)
ccccccHHHHHHHccccccccccccccccccccccccccccHHHHccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mgtssnwfNVLRRKvhrkshrditirhsptpsqgatirkvpeeaancidnntfvsstllpLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQLEL
Flexible Loop (DISEMBL)
mgtssnwfnVLRRkvhrkshrditirhsptpsqgatiRKVPEEAANCIDNNTFVSSTLLPLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQLEL
Low Complexity Region (SEG)
MGTSSNWFNVLRRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLLPLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQLEL
Disordered region (IsUnstruct)
******WFNVLR*******************************AANCIDNNTFVSSTLLPLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQ***********
Disordered Region (DISOPRED)
*G*SSNWF*************************************************************SAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQL**********
Disordered Region (DISEMBL)
MGTSSNWFNVLRRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLLPLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLL*********
Disordered Region (DISPRO)
****SNWFNVLRRKVHRKSHRDITIRHSP*********************************KEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQ***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTSSNWFNVLRRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLLPLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQLEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.5	0.106	0.459	1e-11
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.436	0.105	0.483	1e-10
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.471	0.147	0.417	4e-09
Q9FXI5	794	Protein IQ-DOMAIN 32 OS=A	no	no	0.450	0.080	0.390	2e-05

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 54/74 (72%), Gaps = 3/74 (4%)

Query: 70  SAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRA 129
           ++A KIQ  FR ++AR++F+AL+ LV+LQ +VRG  V+RQ+  AM  M  +VR+Q +I++
Sbjct: 323 ASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQS 382

Query: 130 R--QLLSRQASQLE 141
           R  ++L  QA Q+E
Sbjct: 383 RRIKMLENQA-QVE 395

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 71  AAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRAR 130
           AA  +QA FR +LARRAF AL+ +++LQAL+RG  VRRQ+   + ++  +VRLQ   R R
Sbjct: 115 AATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFARGR 174

Query: 131 QL 132
           ++
Sbjct: 175 EI 176

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 46/67 (68%)

Query: 66  AKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQV 125
           +KE++AAI IQ+ FR HLARR  + +R   +L+ L+ G  V+RQ+ + +  M  L R+Q 
Sbjct: 105 SKEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQS 164

Query: 126 RIRARQL 132
           +IR+R++
Sbjct: 165 QIRSRRI 171

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query: 68  EDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRI 127
           ++S  + IQA  R  LARR     + ++KLQA VRG  VR Q+  ++  + A+V++Q  +
Sbjct: 214 DESVIVVIQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMV 273

Query: 128 RARQ 131
           RAR 
Sbjct: 274 RARH 277

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
359497222	137	PREDICTED: protein IQ-DOMAIN 14-like [Vi	0.866	0.897	0.566	3e-34
255579781	212	hypothetical protein RCOM_0017280 [Ricin	0.922	0.617	0.553	1e-28
357517865	142	IQ domain-containing protein [Medicago t	0.929	0.929	0.528	9e-27
356561100	141	PREDICTED: protein IQ-DOMAIN 14-like [Gl	0.880	0.886	0.548	6e-26
449456855	155	PREDICTED: protein IQ-DOMAIN 31-like [Cu	0.957	0.877	0.477	2e-25
449495094	159	PREDICTED: protein IQ-DOMAIN 31-like [Cu	0.978	0.874	0.455	2e-24
15230468	103	protein IQ-domain 20 [Arabidopsis thalia	0.718	0.990	0.5	2e-23
297819840	103	IQ-domain 20 [Arabidopsis lyrata subsp.	0.718	0.990	0.492	6e-23
218192033	293	hypothetical protein OsI_09884 [Oryza sa	0.528	0.255	0.613	7e-19
22758272	303	Hypothetical protein [Oryza sativa Japon	0.528	0.247	0.613	8e-19

>gi|359497222|ref|XP_003635456.1| PREDICTED: protein IQ-DOMAIN 14-like [Vitis vinifera] gi|296088205|emb|CBI35720.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 100/143 (69%), Gaps = 20/143 (13%)

Query: 1   MGTSSNWFNVLRRKVHRKSHRDITIRH---SPTPSQ-------GATIRKVPEEAANCIDN 50
           MGTS NWF ++R K    S + IT+RH   SP+ ++       GA   + P + A C+ +
Sbjct: 1   MGTSRNWFGIVRTKFF-TSSKTITVRHIATSPSYNEEPDVTEGGAIYSEEPNDGAPCLPS 59

Query: 51  NTFVSSTLLPLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQS 110
                    P KK++ KED AAIKIQAIFR HLARRA++ALRSLVKLQALVRGVCVRRQ+
Sbjct: 60  ---------PRKKDLTKEDIAAIKIQAIFRGHLARRAYRALRSLVKLQALVRGVCVRRQT 110

Query: 111 RVAMHAMHALVRLQVRIRARQLL 133
           R+A+H MHALVRLQVR+R RQLL
Sbjct: 111 RIALHCMHALVRLQVRVRTRQLL 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579781|ref|XP_002530728.1| hypothetical protein RCOM_0017280 [Ricinus communis] gi|223529692|gb|EEF31634.1| hypothetical protein RCOM_0017280 [Ricinus communis]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 95/139 (68%), Gaps = 8/139 (5%)

Query: 1   MGTSSNWFNVLRRKVHRKSHRDIT-IRHS---PTPSQGATIRKVPEEAANCIDNNTFVSS 56
           M TS  WF+++RRK  R S +  T I HS    +P +  T   V +E A   +    +S 
Sbjct: 74  MRTSRKWFDIVRRKFFRSSRKTTTVILHSNACSSPDEAQT-SGVTDETAGFEE---LMSE 129

Query: 57  TLLPLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHA 116
             L   KEI +ED AA++IQA FR HLARRAF+ALRSLVK+QALVRG  VR+Q+R+A+H 
Sbjct: 130 ISLSSTKEITQEDIAALRIQATFRGHLARRAFQALRSLVKVQALVRGAYVRKQTRIALHC 189

Query: 117 MHALVRLQVRIRARQLLSR 135
           MHALVRLQVRIRARQLL R
Sbjct: 190 MHALVRLQVRIRARQLLGR 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517865|ref|XP_003629221.1| IQ domain-containing protein [Medicago truncatula] gi|355523243|gb|AET03697.1| IQ domain-containing protein [Medicago truncatula]

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 90/138 (65%), Gaps = 6/138 (4%)

Query: 1   MGTSSNWFNVLRRKVHRKSHRDITIRHSPTPSQGATIRK---VPEEAANCIDNNTFVSST 57
           MG S  W  ++RRK  R S++DIT+   P  S     ++   +  E+    +N   +   
Sbjct: 1   MGVSKKWLGIVRRKFLRSSNKDITLH--PCISVCTNQKEQAILGNESTTTRENFIILPPP 58

Query: 58  LLPLKKEI-AKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHA 116
            +     I  KED AAIKIQA FR HLARRA +AL+SLVKLQALVRGVCVRRQSR+AM  
Sbjct: 59  AINSSLTIFTKEDFAAIKIQAYFRGHLARRAHRALKSLVKLQALVRGVCVRRQSRIAMQC 118

Query: 117 MHALVRLQVRIRARQLLS 134
           MHALVRLQV++RARQLL 
Sbjct: 119 MHALVRLQVKVRARQLLG 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561100|ref|XP_003548823.1| PREDICTED: protein IQ-DOMAIN 14-like [Glycine max]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 90/135 (66%), Gaps = 10/135 (7%)

Query: 1   MGTSSNWF-NVLRRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLL 59
           MG    WF N++R +  R S++DI +    T    +      EEA   + N  F   T  
Sbjct: 1   MGVPQKWFRNIVRGRFLRSSNKDIVLVLPRT----SICTNECEEAM--LRNEEFSFPT-- 52

Query: 60  PLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHA 119
           P+   I KED++AIKIQA FR HLARRA+KAL+SLVKLQALVRGV VR+QSR+AM  MHA
Sbjct: 53  PIS-SITKEDASAIKIQAYFRGHLARRAYKALKSLVKLQALVRGVWVRKQSRIAMQCMHA 111

Query: 120 LVRLQVRIRARQLLS 134
           LVRLQVR+RARQLL 
Sbjct: 112 LVRLQVRVRARQLLG 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456855|ref|XP_004146164.1| PREDICTED: protein IQ-DOMAIN 31-like [Cucumis sativus]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 94/155 (60%), Gaps = 19/155 (12%)

Query: 1   MGTSSNWFNVLRRKV--HRKSHRDITIRHSPTP--------------SQGATIRKVPEEA 44
           MG + NWF   RRK+     + RD+ ++ + +P                G       EE 
Sbjct: 1   MGITRNWFRRARRKLISRNGNSRDVFLQTNASPIHDEEQTNLTLTQQQDGEEEEDEEEEE 60

Query: 45  ANCIDNNTFVSSTLLPLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGV 104
              ID   + S T     K ++KE+ AAIKIQA FR HLARRAF+ALRSLVKLQAL RGV
Sbjct: 61  EEEID---YESMTPRFQNKVLSKEEEAAIKIQACFRGHLARRAFQALRSLVKLQALARGV 117

Query: 105 CVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQ 139
           C RRQ+R+A+  MHALVRLQVR+RARQLL+R + +
Sbjct: 118 CARRQARIALQFMHALVRLQVRVRARQLLNRYSEE 152

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495094|ref|XP_004159732.1| PREDICTED: protein IQ-DOMAIN 31-like [Cucumis sativus]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 94/156 (60%), Gaps = 17/156 (10%)

Query: 1   MGTSSNWFNVLRRKV--HRKSHRDITIRHSPTP-------------SQGATIRKVPEEAA 45
           MG + NWF   RRK+     + RD+ ++ + +P              Q     +  EE  
Sbjct: 1   MGITRNWFRRARRKLISRNGNSRDVFLQTNASPIHDEEQTNLTLTQQQDGEEEEDEEEDE 60

Query: 46  NCIDNNTFVSSTLLP--LKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRG 103
              +       ++ P    K ++KE+ AAIKIQA FR HLARRAF+ALRSLVKLQAL RG
Sbjct: 61  EEEEEEEIDYESMTPRFQNKVLSKEEEAAIKIQACFRGHLARRAFQALRSLVKLQALARG 120

Query: 104 VCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQ 139
           VC RRQ+R+A+  MHALVRLQVR+RARQLL+R + +
Sbjct: 121 VCARRQARIALQFMHALVRLQVRVRARQLLNRYSEE 156

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230468|ref|NP_190706.1| protein IQ-domain 20 [Arabidopsis thaliana] gi|6572059|emb|CAB63002.1| putative protein [Arabidopsis thaliana] gi|119360013|gb|ABL66735.1| At3g51380 [Arabidopsis thaliana] gi|332645265|gb|AEE78786.1| protein IQ-domain 20 [Arabidopsis thaliana]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/134 (50%), Positives = 79/134 (58%), Gaps = 32/134 (23%)

Query: 1   MGTSSNWFNVLRRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLLP 60
           M  S   F V+RRK+ R+S   ITI  S  P                             
Sbjct: 1   MANSKRLFGVVRRKLLRRSQSRITIIRSSAP----------------------------- 31

Query: 61  LKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHAL 120
              E  +E+ AA+KIQA FR HLARRAFKAL+SLVKLQA+ RGV VRRQ+R+A+H MHAL
Sbjct: 32  ---ETTREEIAAVKIQAFFRGHLARRAFKALKSLVKLQAVARGVLVRRQARIALHCMHAL 88

Query: 121 VRLQVRIRARQLLS 134
            RLQVR+RARQLLS
Sbjct: 89  ARLQVRVRARQLLS 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819840|ref|XP_002877803.1| IQ-domain 20 [Arabidopsis lyrata subsp. lyrata] gi|297323641|gb|EFH54062.1| IQ-domain 20 [Arabidopsis lyrata subsp. lyrata]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 79/134 (58%), Gaps = 32/134 (23%)

Query: 1   MGTSSNWFNVLRRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLLP 60
           M  S   F V+RRK+ R+S   ITI  S  P                             
Sbjct: 1   MANSKRLFGVVRRKLLRRSQSRITIIRSSAP----------------------------- 31

Query: 61  LKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHAL 120
              E  +E+ AA+KIQ+ FR HLARRAFKAL+SLVKLQA+ RGV VRRQ+R+A+H MHAL
Sbjct: 32  ---ETTQEEIAAVKIQSFFRGHLARRAFKALKSLVKLQAVARGVLVRRQARIALHCMHAL 88

Query: 121 VRLQVRIRARQLLS 134
            RLQVR+RARQLLS
Sbjct: 89  ARLQVRVRARQLLS 102

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192033|gb|EEC74460.1| hypothetical protein OsI_09884 [Oryza sativa Indica Group] gi|222624151|gb|EEE58283.1| hypothetical protein OsJ_09309 [Oryza sativa Japonica Group]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 61/75 (81%)

Query: 61  LKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHAL 120
            ++   +ED AA+ IQA FR HLARRAFKAL+SLV+LQA+ RG  VRRQ+ VA+H M A+
Sbjct: 210 CRQGFPREDVAAVTIQAYFRGHLARRAFKALKSLVRLQAVARGAYVRRQAEVAIHCMQAM 269

Query: 121 VRLQVRIRARQLLSR 135
           VRLQ+R+RARQ+L++
Sbjct: 270 VRLQMRVRARQMLTK 284

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22758272|gb|AAN05500.1| Hypothetical protein [Oryza sativa Japonica Group] gi|108706046|gb|ABF93841.1| IQ calmodulin-binding motif family protein, expressed [Oryza sativa Japonica Group]

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 61/75 (81%)

Query: 61  LKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHAL 120
            ++   +ED AA+ IQA FR HLARRAFKAL+SLV+LQA+ RG  VRRQ+ VA+H M A+
Sbjct: 220 CRQGFPREDVAAVTIQAYFRGHLARRAFKALKSLVRLQAVARGAYVRRQAEVAIHCMQAM 279

Query: 121 VRLQVRIRARQLLSR 135
           VRLQ+R+RARQ+L++
Sbjct: 280 VRLQMRVRARQMLTK 294

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2081775	103	IQD20 "AT3G51380" [Arabidopsis	0.5	0.689	0.746	3.8e-23
TAIR|locus:2130200	387	IQD19 "AT4G14750" [Arabidopsis	0.457	0.167	0.538	1.3e-14
TAIR|locus:2134628	534	iqd17 "AT4G00820" [Arabidopsis	0.521	0.138	0.533	4.8e-14
TAIR|locus:2200945	527	IQD18 "AT1G01110" [Arabidopsis	0.619	0.166	0.494	5.6e-14
TAIR|locus:2090409	422	IQD5 "AT3G22190" [Arabidopsis	0.535	0.180	0.525	7.3e-14
TAIR|locus:2057459	416	IQD6 "AT2G26180" [Arabidopsis	0.598	0.204	0.483	1.2e-13
TAIR|locus:2127243	484	IQD22 "AT4G23060" [Arabidopsis	0.443	0.130	0.539	1.5e-13
TAIR|locus:2097478	517	IQD13 "AT3G59690" [Arabidopsis	0.492	0.135	0.486	6.6e-13
TAIR|locus:2174088	403	IQD23 "AT5G62070" [Arabidopsis	0.514	0.181	0.547	8.1e-13
TAIR|locus:2100504	430	IQD3 "AT3G52290" [Arabidopsis	0.514	0.169	0.513	1.2e-12

TAIR|locus:2081775 IQD20 "AT3G51380" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 53/71 (74%), Positives = 62/71 (87%)

Query:    64 EIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRL 123
             E  +E+ AA+KIQA FR HLARRAFKAL+SLVKLQA+ RGV VRRQ+R+A+H MHAL RL
Sbjct:    32 ETTREEIAAVKIQAFFRGHLARRAFKALKSLVKLQAVARGVLVRRQARIALHCMHALARL 91

Query:   124 QVRIRARQLLS 134
             QVR+RARQLLS
Sbjct:    92 QVRVRARQLLS 102

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2130200 IQD19 "AT4G14750" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 35/65 (53%), Positives = 49/65 (75%)

Query:    68 EDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRI 127
             E+ AAIKIQA +R+HLAR+A +AL+ LVKLQALVRG  VR+Q+   +  M AL+ LQ + 
Sbjct:   104 EEFAAIKIQACYRSHLARKALRALKGLVKLQALVRGHLVRKQATATLRCMQALITLQAKA 163

Query:   128 RARQL 132
             R +++
Sbjct:   164 REQRI 168

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2134628 iqd17 "AT4G00820" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
 Identities = 40/75 (53%), Positives = 54/75 (72%)

Query:    66 AKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQV 125
             A+ED AA+ IQ  FR +LARRA +AL+ LVKLQALVRG  VR+Q+++ +  M ALVR+Q 
Sbjct:   129 AREDYAAVVIQTGFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQS 188

Query:   126 RIR-ARQLLSRQASQ 139
             R+   R+ LS   S+
Sbjct:   189 RVLDQRKRLSHDGSR 203

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2200945 IQD18 "AT1G01110" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 44/89 (49%), Positives = 60/89 (67%)

Query:    52 TFVSSTLLPLKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSR 111
             T  S TL P +   A+E+ AA+ IQ  FR +LARRA +AL+ LVKLQALVRG  VR+Q++
Sbjct:   104 TSASKTLAPRRIYYARENYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAK 163

Query:   112 VAMHAMHALVRLQVRIR-ARQLLSRQASQ 139
             + +  M ALVR+Q R+   R+ LS   S+
Sbjct:   164 MTLRCMQALVRVQSRVLDQRKRLSHDGSR 192

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 7.3e-14, P = 7.3e-14
 Identities = 41/78 (52%), Positives = 57/78 (73%)

Query:    64 EIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRL 123
             E ++E+ AA +IQ  +R  LARRA +AL+ LV+LQALVRG  VR+Q+ V +  M ALVR+
Sbjct:    83 EQSRENRAATRIQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQALVRV 142

Query:   124 QVRIRARQLLSRQASQLE 141
             Q R+RAR++  R A +LE
Sbjct:   143 QARVRARRV--RLALELE 158

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 44/91 (48%), Positives = 64/91 (70%)

Query:    48 IDNNTFVSS---TLL--PLKK-EIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALV 101
             +D++T  S+   T+L  P K  +  +E+ AAI+IQ  FR  LARRA +AL+ +V+LQALV
Sbjct:    57 VDSSTVYSAAVATVLRAPPKDFKAVREEWAAIRIQTAFRGFLARRALRALKGIVRLQALV 116

Query:   102 RGVCVRRQSRVAMHAMHALVRLQVRIRARQL 132
             RG  VR+Q+ V +  M ALVR+Q R+RAR++
Sbjct:   117 RGRQVRKQAAVTLRCMQALVRVQARVRARRV 147

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2127243 IQD22 "AT4G23060" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
 Identities = 34/63 (53%), Positives = 48/63 (76%)

Query:    71 AAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRAR 130
             A IKIQ+IFR +LA+RA +AL+ LV+LQA+VRG   R++  V +  MHALVR Q R+RA 
Sbjct:   169 AVIKIQSIFRGYLAKRALRALKGLVRLQAIVRGHIERKRMSVHLRRMHALVRAQARVRAT 228

Query:   131 QLL 133
             +++
Sbjct:   229 RVI 231

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=IEP

TAIR|locus:2097478 IQD13 "AT3G59690" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
 Identities = 35/72 (48%), Positives = 54/72 (75%)

Query:    68 EDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRI 127
             +++ AIKIQA FR ++ARR+F+AL+ LV+LQ +VRG  V+RQ+  AM  M  LVR+Q ++
Sbjct:   168 KNAYAIKIQAAFRGYMARRSFRALKGLVRLQGVVRGHSVKRQTMNAMKYMQLLVRVQTQV 227

Query:   128 RAR--QLLSRQA 137
             ++R  Q+L  +A
Sbjct:   228 QSRRIQMLENRA 239

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2174088 IQD23 "AT5G62070" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 8.1e-13, P = 8.1e-13
 Identities = 40/73 (54%), Positives = 53/73 (72%)

Query:    66 AKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQV 125
             A+E+ AA+KIQ+ FR +LARRA +AL++LVKLQALVRG  VR+Q+   +  M  LVRLQ 
Sbjct:   114 AQENIAAMKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQS 173

Query:   126 RIRARQLLSRQAS 138
             + RAR   S  +S
Sbjct:   174 QARARASRSSHSS 186

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2100504 IQD3 "AT3G52290" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 38/74 (51%), Positives = 52/74 (70%)

Query:    68 EDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRI 127
             E+ AAIKIQ  FR ++ARRA +ALR LV+L++LV+G CVRRQ+   + +M  L R+Q +I
Sbjct:   107 EEIAAIKIQTAFRGYMARRALRALRGLVRLKSLVQGKCVRRQATSTLQSMQTLARVQYQI 166

Query:   128 RARQL-LSRQASQL 140
             R R+L LS     L
Sbjct:   167 RERRLRLSEDKQAL 180

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	98.35
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	98.25
smart00015	26	IQ Short calmodulin-binding motif containing conse	97.99
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.92
KOG2128	1401	consensus Ras GTPase-activating protein family - I	97.33
PTZ00014	821	myosin-A; Provisional	97.33
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.25
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	96.72
COG5022	1463	Myosin heavy chain [Cytoskeleton]	96.53
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	95.96
PTZ00014	821	myosin-A; Provisional	95.6
smart00015	26	IQ Short calmodulin-binding motif containing conse	95.54
KOG0520	975	consensus Uncharacterized conserved protein, conta	95.0
KOG2128	1401	consensus Ras GTPase-activating protein family - I	94.9
KOG0942	1001	consensus E3 ubiquitin protein ligase [Posttransla	92.52
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	91.96
COG5022	1463	Myosin heavy chain [Cytoskeleton]	89.01
KOG4427	1096	consensus E3 ubiquitin protein ligase [Posttransla	88.95
KOG0377	631	consensus Protein serine/threonine phosphatase RDG	87.48
KOG0162	1106	consensus Myosin class I heavy chain [Cytoskeleton	82.6

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=98.35  E-value=6.3e-07  Score=48.02  Aligned_cols=21  Identities=48%  Similarity=0.662  Sum_probs=19.0

Q ss_pred             hHHHHHHHHHHhHHHHHHHHH
Q 043949           69 DSAAIKIQAIFRAHLARRAFK   89 (142)
Q Consensus        69 ~~AAi~IQa~~RG~l~Rk~y~   89 (142)
                      +.||+.||+.||||++|++|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999985

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=98.25  E-value=5.4e-06  Score=79.04  Aligned_cols=71  Identities=30%  Similarity=0.338  Sum_probs=57.9

Q ss_pred             HHHHHhHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 043949           64 EIAKEDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQAS  138 (142)
Q Consensus        64 ~~~~~~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~~  138 (142)
                      +......+++.||..+|||+.|+.|..++ .++.+|+++||+++|+..   . ...+++.||+.+|++..|+++..
T Consensus       668 R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r~~y~~  739 (862)
T KOG0160|consen  668 RSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNRRRYRA  739 (862)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHHHHHHH
Confidence            34556678888999999999999999976 799999999999999922   2 45788888888888888877643

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=97.99  E-value=6.9e-06  Score=45.91  Aligned_cols=22  Identities=50%  Similarity=0.608  Sum_probs=19.8

Q ss_pred             HhHHHHHHHHHHhHHHHHHHHH
Q 043949           68 EDSAAIKIQAIFRAHLARRAFK   89 (142)
Q Consensus        68 ~~~AAi~IQa~~RG~l~Rk~y~   89 (142)
                      .+.+|+.||+.||||++|+.|.
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            4689999999999999999984

Calmodulin-binding motif.

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.92  E-value=6e-05  Score=72.07  Aligned_cols=71  Identities=30%  Similarity=0.283  Sum_probs=61.4

Q ss_pred             hHHHHHHHhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 043949           61 LKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLS  134 (142)
Q Consensus        61 ~~~~~~~~~~AAi~IQa~~RG~l~Rk~y~~l~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr  134 (142)
                      .++.+.....+++.||+.+||++.|........++.+|..+|+++.|+.|....   ++++.||+.+|+..+|.
T Consensus       688 ~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~~---~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  688 ARKKFLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRALI---PASITIQSGVRAMLARN  758 (862)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence            455688899999999999999999984443347999999999999999994444   99999999999999987

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=97.33  E-value=0.00072  Score=67.19  Aligned_cols=79  Identities=23%  Similarity=0.354  Sum_probs=61.1

Q ss_pred             chHHHHHH-HhHHHHHHHHHHhHHHH---HHHHHh--HHHHHHHHHHhhhHHHHHHHHHHHH----HHhHHHHHHHHHHH
Q 043949           60 PLKKEIAK-EDSAAIKIQAIFRAHLA---RRAFKA--LRSLVKLQALVRGVCVRRQSRVAMH----AMHALVRLQVRIRA  129 (142)
Q Consensus        60 ~~~~~~~~-~~~AAi~IQa~~RG~l~---Rk~y~~--l~~iv~LQa~iRG~laRr~~~~~l~----~~~aav~IQa~vRg  129 (142)
                      +....++. .....+.||++|||+++   +-.|..  ...++.+|++.||+++|+.+...+.    ++.++++||+.+|+
T Consensus       555 ~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~  634 (1401)
T KOG2128|consen  555 RSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRK  634 (1401)
T ss_pred             HhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHh
Confidence            33344555 78899999999999996   111222  3379999999999999998875444    35899999999999


Q ss_pred             HHhhhhhhh
Q 043949          130 RQLLSRQAS  138 (142)
Q Consensus       130 ~~aRr~~~~  138 (142)
                      +..|..+..
T Consensus       635 f~~r~~y~~  643 (1401)
T KOG2128|consen  635 FPNRKDYKL  643 (1401)
T ss_pred             cccchHHHH
Confidence            999987754

>PTZ00014 myosin-A; Provisional

Probab=97.33  E-value=0.00051  Score=65.49  Aligned_cols=40  Identities=23%  Similarity=0.215  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHH
Q 043949           70 SAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQ  109 (142)
Q Consensus        70 ~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~  109 (142)
                      ..++.||++||||++|+.|..+. +++.||+.+||+++++.
T Consensus       778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~  818 (821)
T PTZ00014        778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE  818 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57889999999999999999855 88999999999998875

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.25  E-value=0.00026  Score=68.44  Aligned_cols=72  Identities=31%  Similarity=0.316  Sum_probs=60.4

Q ss_pred             HhHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHhhhhhhhh
Q 043949           68 EDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMH-------AMHALVRLQVRIRARQLLSRQASQ  139 (142)
Q Consensus        68 ~~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~~~l~-------~~~aav~IQa~vRg~~aRr~~~~~  139 (142)
                      ...||..||..++||+.|+.|...+ .+|++|+.+||+.+|++|.....       -+-+|-.+|+.+||+..+.-.+++
T Consensus       809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~  888 (975)
T KOG0520|consen  809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ  888 (975)
T ss_pred             chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence            3468999999999999999999977 89999999999999999973322       247888999999999887765543

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=96.72  E-value=0.0022  Score=34.05  Aligned_cols=18  Identities=22%  Similarity=0.384  Sum_probs=12.2

Q ss_pred             HHHHHHHHhhhHHHHHHH
Q 043949           93 SLVKLQALVRGVCVRRQS  110 (142)
Q Consensus        93 ~iv~LQa~iRG~laRr~~  110 (142)
                      +++.||+.+||+++|++|
T Consensus         3 aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    3 AAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            466677777777777665

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=96.53  E-value=0.0096  Score=59.80  Aligned_cols=72  Identities=25%  Similarity=0.326  Sum_probs=57.0

Q ss_pred             HHHhHHHHHHHHHHhHHHHHHHHHh-HHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 043949           66 AKEDSAAIKIQAIFRAHLARRAFKA-LRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQAS  138 (142)
Q Consensus        66 ~~~~~AAi~IQa~~RG~l~Rk~y~~-l~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~~  138 (142)
                      ..-...++.||++|||+..|++|.. .+.+..+|...+|.+.++.+..-. ....+++||..++....|..+-+
T Consensus       742 ~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~r~~~~~  814 (1463)
T COG5022         742 AKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGSRKEYRS  814 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhhHHHHHH
Confidence            3356789999999999999999988 558888899999999997664222 24788888888888887776544

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=95.96  E-value=0.04  Score=52.82  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             HhHHHHHHHHHHhHHHHHHHHHhHHH
Q 043949           68 EDSAAIKIQAIFRAHLARRAFKALRS   93 (142)
Q Consensus        68 ~~~AAi~IQa~~RG~l~Rk~y~~l~~   93 (142)
                      --.-|+.||++|||+++|.+|+.++.
T Consensus       695 l~~lvtllQK~~RG~~~R~ry~rmka  720 (1001)
T KOG0164|consen  695 LPSLVTLLQKAWRGWLARQRYRRMKA  720 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999999774

>PTZ00014 myosin-A; Provisional

Probab=95.60  E-value=0.039  Score=52.96  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=35.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 043949           93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQ  136 (142)
Q Consensus        93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~  136 (142)
                      .++.||+.+||+++|+.|...   ..+++.||+.+|++..++.+
T Consensus       779 ~~~~iq~~~r~~~~r~~~~~~---~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        779 LVSVLEALILKIKKKRKVRKN---IKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence            477899999999999999544   48999999999999998765

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=95.54  E-value=0.014  Score=32.30  Aligned_cols=19  Identities=32%  Similarity=0.448  Sum_probs=15.4

Q ss_pred             HHHHHHHHHhhhHHHHHHH
Q 043949           92 RSLVKLQALVRGVCVRRQS  110 (142)
Q Consensus        92 ~~iv~LQa~iRG~laRr~~  110 (142)
                      ..++.||+.+||+++|+.|
T Consensus         4 ~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        4 RAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3578888888888888877

Calmodulin-binding motif.

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=95.00  E-value=0.056  Score=52.76  Aligned_cols=112  Identities=13%  Similarity=0.060  Sum_probs=64.0

Q ss_pred             hhhHHHH--HHHHHHhcccceeeecCCCCCCCccccCCcccccccccCccccccccc-c-hHHHHHHHhHHHHHHHHHHh
Q 043949            5 SNWFNVL--RRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLL-P-LKKEIAKEDSAAIKIQAIFR   80 (142)
Q Consensus         5 ~~Wf~~~--rr~f~r~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~AAi~IQa~~R   80 (142)
                      |+||+.-  |+.||-+++..|.|+++                   .+.+.+..+-.. + .+...++---++-.+|+++|
T Consensus       817 q~~f~~yk~r~~~l~tr~p~v~iqa~-------------------~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~R  877 (975)
T KOG0520|consen  817 QKKFRGYKQRKEFLSTRQPIVKIQAA-------------------VRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFR  877 (975)
T ss_pred             hhhhhhHHhhhhhcccCCccccchhh-------------------hhchhHhhhhheechhhhHHHHHHHHHHHhhhhhc
Confidence            6788766  88899999998888864                   222211111000 0 11233444556777777777


Q ss_pred             HHHHHHHHHhHH-HHHHHHHHhhhHHHH-HHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 043949           81 AHLARRAFKALR-SLVKLQALVRGVCVR-RQSRVAMHAMHALVRLQVRIRARQLLSRQA  137 (142)
Q Consensus        81 G~l~Rk~y~~l~-~iv~LQa~iRG~laR-r~~~~~l~~~~aav~IQa~vRg~~aRr~~~  137 (142)
                      ||..|....... ..+.+|...+=|-.= +++.+.+  -.|++.||+.+|...++..+-
T Consensus       878 gfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~--~~A~~~VQsm~rs~~a~qqyr  934 (975)
T KOG0520|consen  878 GFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL--TRAVVRVQSMFRSPKAQQQYR  934 (975)
T ss_pred             ccccccchhccccccchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHH
Confidence            777776665533 344555555444332 2333333  277788888887777765443

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=94.90  E-value=0.045  Score=55.00  Aligned_cols=65  Identities=28%  Similarity=0.302  Sum_probs=52.4

Q ss_pred             HHHHHHhHHHHHHHHHhHH--------HHHHHHHHhhhHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhhhhhhhhc
Q 043949           74 KIQAIFRAHLARRAFKALR--------SLVKLQALVRGVCVRRQSRVA----MHAMHALVRLQVRIRARQLLSRQASQLE  141 (142)
Q Consensus        74 ~IQa~~RG~l~Rk~y~~l~--------~iv~LQa~iRG~laRr~~~~~----l~~~~aav~IQa~vRg~~aRr~~~~~~~  141 (142)
                      +||+..||+..|..+....        .++.+|+++||++.   |...    .....-++++|+..||..+|+..++.++
T Consensus       540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q  616 (1401)
T KOG2128|consen  540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQ  616 (1401)
T ss_pred             hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3499999999999887722        69999999999997   3322    2224889999999999999999887664

>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.52  E-value=0.11  Score=50.60  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=23.3

Q ss_pred             HHHHHhHHHHHHHHHHhHHHHHHHHHh
Q 043949           64 EIAKEDSAAIKIQAIFRAHLARRAFKA   90 (142)
Q Consensus        64 ~~~~~~~AAi~IQa~~RG~l~Rk~y~~   90 (142)
                      +..+++++|+++|+.||||++|++.+.
T Consensus        24 e~rk~e~~av~vQs~~Rg~~~r~~~~~   50 (1001)
T KOG0942|consen   24 EERKQEKNAVKVQSFWRGFRVRHNQKL   50 (1001)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            455678999999999999999998666

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=91.96  E-value=0.31  Score=50.86  Aligned_cols=42  Identities=26%  Similarity=0.359  Sum_probs=36.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 043949           93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLS  134 (142)
Q Consensus        93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr  134 (142)
                      -|+.|||.||||++|+.|........++..||.-+|.++..+
T Consensus       775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr  816 (1930)
T KOG0161|consen  775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR  816 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            388889999999999999888888899999999999986543

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=89.01  E-value=2  Score=43.87  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=54.9

Q ss_pred             HHHHHhHHHHHHHHHHhHHHHHHHHHhHH-HHHHHH-HHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 043949           64 EIAKEDSAAIKIQAIFRAHLARRAFKALR-SLVKLQ-ALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQAS  138 (142)
Q Consensus        64 ~~~~~~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQ-a~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~~  138 (142)
                      +......+++.||..|+.+..|+.|+... -|..|| .+.+....+-.. +....+++.+.+|+++|...+.++...
T Consensus       788 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~-e~~~~~~~~~L~~~~~rs~~~~kr~~~  863 (1463)
T COG5022         788 DYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETE-EVEFSLKAEVLIQKFGRSLKAKKRFSL  863 (1463)
T ss_pred             ccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            45567789999999999999999999944 688888 444444444432 233335888999999999888887654

>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.95  E-value=0.44  Score=46.26  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=22.2

Q ss_pred             HHHhHHHHHHHHHHhHHHHHHHHHh
Q 043949           66 AKEDSAAIKIQAIFRAHLARRAFKA   90 (142)
Q Consensus        66 ~~~~~AAi~IQa~~RG~l~Rk~y~~   90 (142)
                      .+++.||+.||+.||||++|+++..
T Consensus        27 rrr~~aa~~iq~~lrsyl~Rkk~~~   51 (1096)
T KOG4427|consen   27 RRREAAALFIQRVLRSYLVRKKAQI   51 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999876

>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]

Probab=87.48  E-value=1.2  Score=41.03  Aligned_cols=36  Identities=28%  Similarity=0.192  Sum_probs=28.8

Q ss_pred             HHHHhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 043949           65 IAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQAL  100 (142)
Q Consensus        65 ~~~~~~AAi~IQa~~RG~l~Rk~y~~l~~iv~LQa~  100 (142)
                      ..+.-+||+.||.++|+|.+|.+-+..-.-..+|++
T Consensus        13 s~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl   48 (631)
T KOG0377|consen   13 STRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL   48 (631)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence            455679999999999999999998776555556654

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=82.60  E-value=1.7  Score=42.40  Aligned_cols=40  Identities=35%  Similarity=0.514  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHH
Q 043949           69 DSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSR  111 (142)
Q Consensus        69 ~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~  111 (142)
                      +.-|.+||.+||.|++|++|..++ ...+   ++-|-..|+.+.
T Consensus       696 d~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~S  736 (1106)
T KOG0162|consen  696 DGMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRYS  736 (1106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHH
Confidence            457899999999999999999977 2332   234556666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	2e-06
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	5e-04
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	6e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-05

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 62  KKEIAKEDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMHAMHAL 120
                +   AAI IQ   R ++ R+ ++ +R + + LQAL+RG  VR + +  M   H  
Sbjct: 809 YATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ-MMLREHKS 867

Query: 121 VRLQVRIRARQLLSRQASQLE 141
           + +Q  +R           L+
Sbjct: 868 IIIQKHVRGWLARVHYHRTLK 888

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 67  KEDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQV 125
           K  +A I+IQ   R  L R+ +  +R + + +Q  VRG   R  +   +    A + +Q 
Sbjct: 766 KLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQK 824

Query: 126 RIRARQ 131
             R   
Sbjct: 825 FQRMYV 830

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 12/65 (18%)

Query: 69  DSAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQ 124
                  QA  R +L R+A+K L+     L  +Q  +R   V R  +          +L 
Sbjct: 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ-WW-------KLY 830

Query: 125 VRIRA 129
            +++ 
Sbjct: 831 SKVKP 835

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 63  KEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALV 101
           K++  +      IQ   R  L  R ++  +   K++ L+
Sbjct: 799 KKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 837

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 40.6 bits (96), Expect = 6e-06
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 67  KEDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSR 111
           K  +A I+IQ   R  L R+ +  ++ + + +Q  VRG   R  ++
Sbjct: 3   KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK 48

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 69  DSAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQ 124
               I  QA  R +LAR+AF   +    S+  +Q  VR                    L+
Sbjct: 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLK 851

Query: 125 VRIRARQLLSRQASQLEL 142
           V  +  ++ ++       
Sbjct: 852 VTRQEEEMQAKDEELQRT 869

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 6/63 (9%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 73  IKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIR 128
            +   + +    ++A    R    S+  +Q+ +      +++         +  L+    
Sbjct: 765 KRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTE-KPPKGQEVSELEAIYN 823

Query: 129 ARQ 131
           + Q
Sbjct: 824 SLQ 826

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 7/71 (9%), Positives = 21/71 (29%), Gaps = 3/71 (4%)

Query: 63  KEIAKEDSAAIKIQAIFRAHLARRAFKALR---SLVKLQALVRGVCVRRQSRVAMHAMHA 119
            E      +   +Q+   AH   +  +       + +L+A+   +  + +       +  
Sbjct: 781 LESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAP 840

Query: 120 LVRLQVRIRAR 130
                  I + 
Sbjct: 841 AGLTPNEIDST 851

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 7/77 (9%), Positives = 23/77 (29%), Gaps = 3/77 (3%)

Query: 69  DSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRR---QSRVAMHAMHALVRLQV 125
            S   K   + RA+   +     ++ ++ +     +   +    +           + Q 
Sbjct: 763 GSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQE 822

Query: 126 RIRARQLLSRQASQLEL 142
                 + +   ++L L
Sbjct: 823 VSELEAIYNSLQTKLRL 839

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.43
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	99.38
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.15
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	99.14
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.86
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	98.52
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	98.2
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	98.19
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.83
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.77
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	97.64
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	97.58
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	97.58
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	97.21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.59
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	95.95
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	94.11
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	93.74
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	89.91
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	88.65
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	87.67
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	87.04
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	84.6

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.43  E-value=1.7e-13  Score=130.08  Aligned_cols=104  Identities=25%  Similarity=0.338  Sum_probs=79.8

Q ss_pred             hhhHHHH--HHHHHHhcccceeeecCCCCCCCccccCCcccccccccCcccccccccchHH---HHHHHhHHHHHHHHHH
Q 043949            5 SNWFNVL--RRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLLPLKK---EIAKEDSAAIKIQAIF   79 (142)
Q Consensus         5 ~~Wf~~~--rr~f~r~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~AAi~IQa~~   79 (142)
                      |+|+|.-  |++|.+++.++++||+.                   |+.+         ..+   +..++..||+.||++|
T Consensus       775 Qa~~Rg~l~Rk~~~~~r~aai~IQ~~-------------------~Rg~---------~aR~~~~~lr~~~AAi~IQs~~  826 (1080)
T 2dfs_A          775 QKTIRGWLMRKKYMRMRRAAITIQRY-------------------VRGH---------QARCYATFLRRTRAAIIIQKFQ  826 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHH-------------------HHHH---------HHhhcccccccchhHHHHHHHH
Confidence            5566554  88899999999999996                   6664         111   2345789999999999


Q ss_pred             hHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 043949           80 RAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQA  137 (142)
Q Consensus        80 RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~  137 (142)
                      |||++|+.|..++ +++.||+.+||+++|+.+.. +....+++.||+.|||+.+|+.+.
T Consensus       827 Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~~y~  884 (1080)
T 2dfs_A          827 RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARVHYH  884 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999966 89999999999999998853 333456666666666666665543

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=99.38  E-value=1.5e-12  Score=83.93  Aligned_cols=54  Identities=26%  Similarity=0.410  Sum_probs=46.2

Q ss_pred             HHhHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHHHHHHHHhHHH
Q 043949           67 KEDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMHAMHALV  121 (142)
Q Consensus        67 ~~~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~~~l~~~~aav  121 (142)
                      ..+.||+.||+.||||++|+.|..++ +++.||+.+||+++|+.+.. +...++|+
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA~   57 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAAT   57 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCcc
Confidence            46789999999999999999999977 89999999999999999954 44445543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.15  E-value=1.8e-10  Score=109.50  Aligned_cols=70  Identities=24%  Similarity=0.307  Sum_probs=58.7

Q ss_pred             HhHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 043949           68 EDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQAS  138 (142)
Q Consensus        68 ~~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~~  138 (142)
                      ...+|+.||++||||++|+.|..++ +++.||+.+||+++|+.+. .+....||+.||+.|||+.+|+.+..
T Consensus       767 l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~y~~  837 (1080)
T 2dfs_A          767 LRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKRYQC  837 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHHHHH
Confidence            3679999999999999999999976 8899999999999999884 34456788888888888888876543

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=99.14  E-value=1.1e-10  Score=72.35  Aligned_cols=42  Identities=21%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHhHH---HHHHHHHHhhhHHHHHHH
Q 043949           69 DSAAIKIQAIFRAHLARRAFKALR---SLVKLQALVRGVCVRRQS  110 (142)
Q Consensus        69 ~~AAi~IQa~~RG~l~Rk~y~~l~---~iv~LQa~iRG~laRr~~  110 (142)
                      ..||+.||+.||||++|+.|..++   +++.||+.+||+++|+.|
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            368899999999999999988754   677777777777777765

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.86  E-value=7.7e-09  Score=63.92  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 043949           92 RSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQ  136 (142)
Q Consensus        92 ~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~  136 (142)
                      .+++.||+.+||+++|+.+.. +....++++||+.|||+.+|+.+
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHhh
Confidence            478999999999999999944 44567999999999999999864

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=98.52  E-value=2.1e-07  Score=59.50  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 043949           92 RSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQ  139 (142)
Q Consensus        92 ~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~~~  139 (142)
                      ..++.||+.+||+++|+.|...   ..+++.||+.|||+.+|+.+...
T Consensus         6 ~aai~IQ~~~Rg~~~Rk~~~~~---r~aai~IQ~~~Rg~~aR~~~~~~   50 (58)
T 2ix7_C            6 AACIRIQKTIRGWLLRKRYLCM---QRAAITVQRYVRGYQARCYAKFL   50 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999443   38999999999999999987653

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=98.20  E-value=3.6e-06  Score=54.94  Aligned_cols=39  Identities=33%  Similarity=0.358  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHhhhHHHHH
Q 043949           70 SAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRR  108 (142)
Q Consensus        70 ~AAi~IQa~~RG~l~Rk~y~~l~----~iv~LQa~iRG~laRr  108 (142)
                      ..++.||+.+|||++|+.|..+.    ++..||.-+|+++..+
T Consensus         7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~   49 (64)
T 1wdc_A            7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR   49 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34455555555555555554431    3334455555444444

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=98.19  E-value=3.1e-06  Score=55.15  Aligned_cols=41  Identities=27%  Similarity=0.187  Sum_probs=23.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 043949           94 LVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLS  134 (142)
Q Consensus        94 iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr  134 (142)
                      ++.||+.+||+++|+.|...+....|+..||..+|++..++
T Consensus         7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr   47 (63)
T 2bl0_A            7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK   47 (63)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45556666666666666554444455556666666665543

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.83  E-value=5.5e-05  Score=49.22  Aligned_cols=42  Identities=24%  Similarity=0.280  Sum_probs=38.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 043949           93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLS  134 (142)
Q Consensus        93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr  134 (142)
                      .++.|||.+||+++|+.|...+....|+..||..+|++..++
T Consensus         8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~   49 (64)
T 1wdc_A            8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR   49 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            588999999999999999887777788889999999998875

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.77  E-value=4e-05  Score=49.80  Aligned_cols=42  Identities=21%  Similarity=0.212  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHhhhHHHHHHH
Q 043949           69 DSAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRRQS  110 (142)
Q Consensus        69 ~~AAi~IQa~~RG~l~Rk~y~~l~----~iv~LQa~iRG~laRr~~  110 (142)
                      ...++.||+.+|||++|+.|..+.    ++..||.-+|+++.++..
T Consensus         4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w   49 (63)
T 2bl0_A            4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW   49 (63)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            467899999999999999999963    677999999999998753

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=97.64  E-value=8.7e-05  Score=69.30  Aligned_cols=43  Identities=30%  Similarity=0.257  Sum_probs=36.1

Q ss_pred             HhHHHHHHHHHHhHHHHHHHHHhH----HHHHHHHHHhhhHHHHHHH
Q 043949           68 EDSAAIKIQAIFRAHLARRAFKAL----RSLVKLQALVRGVCVRRQS  110 (142)
Q Consensus        68 ~~~AAi~IQa~~RG~l~Rk~y~~l----~~iv~LQa~iRG~laRr~~  110 (142)
                      -..+|+.||++||||++|+.|..+    .+++.||+.+||+++++.+
T Consensus       778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            446788999999999999999886    3788889999999988865

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=97.58  E-value=5.5e-05  Score=42.75  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.0

Q ss_pred             HHHhHHHHHHHHHHhHHHHHHH
Q 043949           66 AKEDSAAIKIQAIFRAHLARRA   87 (142)
Q Consensus        66 ~~~~~AAi~IQa~~RG~l~Rk~   87 (142)
                      .+++.||+.||.+||+|+.++.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            3578999999999999998753

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=97.58  E-value=6.4e-05  Score=43.77  Aligned_cols=24  Identities=42%  Similarity=0.666  Sum_probs=20.5

Q ss_pred             HHHhHHHHHHHHHHhHHHHHHHHH
Q 043949           66 AKEDSAAIKIQAIFRAHLARRAFK   89 (142)
Q Consensus        66 ~~~~~AAi~IQa~~RG~l~Rk~y~   89 (142)
                      .+++.||+.||.+||+|+.|+...
T Consensus         3 k~Ee~aA~vIQrA~R~yl~rr~~~   26 (31)
T 2l53_B            3 GSEEVSAMVIQRAFRRHLLQRSLK   26 (31)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc
Confidence            357899999999999999997643

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=97.21  E-value=0.0009  Score=62.49  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=38.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 043949           93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQ  136 (142)
Q Consensus        93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~  136 (142)
                      .++.||+.+||+++|++|...+....|++.||+.+|++..++..
T Consensus       781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            58899999999999999976665668999999999999998753

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.05  E-value=0.00078  Score=64.21  Aligned_cols=42  Identities=31%  Similarity=0.286  Sum_probs=37.4

Q ss_pred             HhHHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHhhhHHHHHH
Q 043949           68 EDSAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRRQ  109 (142)
Q Consensus        68 ~~~AAi~IQa~~RG~l~Rk~y~~l~----~iv~LQa~iRG~laRr~  109 (142)
                      -..+|+.||++||||++|+.|..++    +++.||+.+|||+.++.
T Consensus       791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~  836 (1184)
T 1i84_S          791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH  836 (1184)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3468999999999999999999853    79999999999999975

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.59  E-value=0.0052  Score=58.59  Aligned_cols=43  Identities=16%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 043949           93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSR  135 (142)
Q Consensus        93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~  135 (142)
                      .++.||+.+||+++|+.|........+++.||+.||++..++.
T Consensus       794 ~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~  836 (1184)
T 1i84_S          794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH  836 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5889999999999999997766667899999999999999865

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=95.95  E-value=0.016  Score=44.26  Aligned_cols=38  Identities=34%  Similarity=0.426  Sum_probs=29.3

Q ss_pred             HHHHHhHHHHHHHHHHhHHHHHHHHHhH-HHHHHHHHHh
Q 043949           64 EIAKEDSAAIKIQAIFRAHLARRAFKAL-RSLVKLQALV  101 (142)
Q Consensus        64 ~~~~~~~AAi~IQa~~RG~l~Rk~y~~l-~~iv~LQa~i  101 (142)
                      ...-+..|++.||+.+|||++|+.++.. .++.++-++-
T Consensus        40 KI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~   78 (148)
T 3gn4_A           40 KIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3555788999999999999999999884 4665554443

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=94.11  E-value=0.061  Score=41.63  Aligned_cols=27  Identities=37%  Similarity=0.552  Sum_probs=23.9

Q ss_pred             HHHHHhHHHHHHHHHHhHHHHHHHHHh
Q 043949           64 EIAKEDSAAIKIQAIFRAHLARRAFKA   90 (142)
Q Consensus        64 ~~~~~~~AAi~IQa~~RG~l~Rk~y~~   90 (142)
                      ....+..||+.||.+||.|+.|+.+++
T Consensus       125 ~~~~e~~aA~~IQra~R~~~~r~~~~~  151 (168)
T 4dck_A          125 RRKHEEVSAMVIQRAFRRHLLQRSLKH  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            456789999999999999999988776

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=93.74  E-value=0.063  Score=49.93  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=21.6

Q ss_pred             HhHHHHHHHHHHhHHHHHHHHHhHH
Q 043949           68 EDSAAIKIQAIFRAHLARRAFKALR   92 (142)
Q Consensus        68 ~~~AAi~IQa~~RG~l~Rk~y~~l~   92 (142)
                      ...+|+.||++||||++|++|+.++
T Consensus       767 l~~~~~~iQ~~~Rg~l~R~~~~~~r  791 (795)
T 1w7j_A          767 LRAACIRIQKTIRGWLMRKKYMRMR  791 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999998866

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=89.91  E-value=0.69  Score=44.35  Aligned_cols=41  Identities=15%  Similarity=0.169  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHH
Q 043949           69 DSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQS  110 (142)
Q Consensus        69 ~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~  110 (142)
                      ..+|+.||. +|||++|++|+.++ .++.+|.+.|+...|+..
T Consensus       775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~  816 (1052)
T 4anj_A          775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA  816 (1052)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            466777774 79999999999876 778888888887766654

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=88.65  E-value=0.52  Score=35.83  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=18.5

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHH
Q 043949           93 SLVKLQALVRGVCVRRQSRVAMH  115 (142)
Q Consensus        93 ~iv~LQa~iRG~laRr~~~~~l~  115 (142)
                      .++.+|+.+||||+|+++.-.+.
T Consensus        47 ~~i~iQktvR~~L~rkkhkPRi~   69 (148)
T 3gn4_A           47 ACIKMQKTIRMWLCKRRHKPRID   69 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH
Confidence            48888999999999998865443

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=87.67  E-value=0.54  Score=26.12  Aligned_cols=20  Identities=15%  Similarity=0.081  Sum_probs=16.4

Q ss_pred             HHhHHHHHHHHHHHHHhhhh
Q 043949          116 AMHALVRLQVRIRARQLLSR  135 (142)
Q Consensus       116 ~~~aav~IQa~vRg~~aRr~  135 (142)
                      +..+|+.||..||++..++.
T Consensus         5 Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            5 EEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            35789999999999988753

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=87.04  E-value=0.64  Score=26.69  Aligned_cols=21  Identities=14%  Similarity=0.048  Sum_probs=17.1

Q ss_pred             HHhHHHHHHHHHHHHHhhhhh
Q 043949          116 AMHALVRLQVRIRARQLLSRQ  136 (142)
Q Consensus       116 ~~~aav~IQa~vRg~~aRr~~  136 (142)
                      +.-+|+.||..||++..++..
T Consensus         5 Ee~aA~vIQrA~R~yl~rr~~   25 (31)
T 2l53_B            5 EEVSAMVIQRAFRRHLLQRSL   25 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            457899999999999987643

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=84.60  E-value=1.7  Score=41.62  Aligned_cols=42  Identities=7%  Similarity=-0.040  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 043949           92 RSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQ  136 (142)
Q Consensus        92 ~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~  136 (142)
                      ..++.+|..+||+++|++|.. +  ..+++.||...|+.+.|+..
T Consensus       775 ~~~~~~iq~~r~~l~r~~~~k-~--~~~a~~i~~~~r~~~~r~~~  816 (1052)
T 4anj_A          775 DHLAELVKRVNHWLICSRWKK-V--QWCSLSVIKLKNKIKYRAEA  816 (1052)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHc
Confidence            345556667899999999943 3  37889999988888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	7e-06
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	1e-05
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	3e-05
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	0.002

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 42.0 bits (98), Expect = 7e-06
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 69  DSAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRR 108
                  QA  R +L R+A+K L+     L  +Q  +R   V R
Sbjct: 731 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 774

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 69  DSAAIKIQAIFRAHLARRAFKAL----RSLVKLQALVRGVCVRR 108
                  QA  R  L R  ++A+     S+  +Q  VR     +
Sbjct: 735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVK 778

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 5/40 (12%), Positives = 19/40 (47%)

Query: 63  KEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVR 102
           + + +   +   IQ   R+ +  + +  ++   K++ L++
Sbjct: 755 RAMVERRESIFCIQYNVRSFMNVKHWPWMKLFFKIKPLLK 794

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 69  DSAAIKIQAIFRAHLARRAFKALR 92
            +A I+IQ   R  L R+ +  +R
Sbjct: 706 RAACIRIQKTIRGWLMRKKYMRMR 729

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.96
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.94
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.52
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.15
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	95.27

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.96  E-value=4.5e-06  Score=74.87  Aligned_cols=44  Identities=30%  Similarity=0.301  Sum_probs=39.1

Q ss_pred             HHhHHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHhhhHHHHHHH
Q 043949           67 KEDSAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRRQS  110 (142)
Q Consensus        67 ~~~~AAi~IQa~~RG~l~Rk~y~~l~----~iv~LQa~iRG~laRr~~  110 (142)
                      ....+|+.||++||||++|+.|+.++    +++.||+.+||+++|+.+
T Consensus       729 ~l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         729 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            34678999999999999999999866    688899999999999976

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.94  E-value=4.1e-06  Score=75.15  Aligned_cols=44  Identities=25%  Similarity=0.212  Sum_probs=38.1

Q ss_pred             HHhHHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHhhhHHHHHHH
Q 043949           67 KEDSAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRRQS  110 (142)
Q Consensus        67 ~~~~AAi~IQa~~RG~l~Rk~y~~l~----~iv~LQa~iRG~laRr~~  110 (142)
                      ....+|+.||++||||++|++|+.+.    +++.||+.+||+++|+.+
T Consensus       733 ~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         733 KLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34578999999999999999998742    789999999999999876

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.52  E-value=0.00011  Score=65.66  Aligned_cols=45  Identities=18%  Similarity=0.215  Sum_probs=39.5

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 043949           92 RSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQ  136 (142)
Q Consensus        92 ~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~  136 (142)
                      ..++.||+.+||+++|++|...+....|++.||+.+||+..|+..
T Consensus       736 ~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         736 EIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            368899999999999999976665568999999999999998864

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.15  E-value=0.00049  Score=61.31  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 043949           93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQ  136 (142)
Q Consensus        93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~  136 (142)
                      .++.||+.+||+++|++|........+++.||+.+|++.+|++.
T Consensus       733 ~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         733 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            68889999999999999965444456899999999999999864

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=95.27  E-value=0.008  Score=52.61  Aligned_cols=27  Identities=33%  Similarity=0.525  Sum_probs=22.0

Q ss_pred             HHHhHHHHHHHHHHhHHHHHHHHHhHH
Q 043949           66 AKEDSAAIKIQAIFRAHLARRAFKALR   92 (142)
Q Consensus        66 ~~~~~AAi~IQa~~RG~l~Rk~y~~l~   92 (142)
                      +....+|+.||+.||||++|++|.+++
T Consensus       703 ~~l~~~~~~iQ~~~R~~l~Rk~~~r~r  729 (730)
T d1w7ja2         703 DKLRAACIRIQKTIRGWLMRKKYMRMR  729 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334568999999999999999998754