Citrus Sinensis ID: 043950

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
DLQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVVGPQLGLC
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccccccccEEEc
Coil and Loop (DISEMBL)
dlqsqrflpsaprpslnlqtklEILPAMVagvwsddnslqlEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTniasgtsmntnvvidhgAVPIFVKLlaspsddvREQAVWALGnvaadspgcrnlvLREEALIPLLAQLNEHAKLSMLRIATWTLsklckgkpqppfdqvrpalPALAQLihlddeevlsDACWTlsylsygtndKIQVVIEAGVCRRLVEllghpspsvltpalwtvgnivmgddfqtqciinhgAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGcikplcdlllcvdpkIVTVCLEGLENILKVGEaekntgstigdvNQYARLVEEDEGFKKIeglkshdnngiREKAVKILETYWcgrvvgpqlglc
Flexible Loop (DISEMBL)
dlqsqrflpsaprpslnlQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSierspriedviqaGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLghpspsvltPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVgeaekntgstigdvnQYARLVEEDEGFKkieglkshdnngirEKAVKILETYWCgrvvgpqlglc
Low Complexity Region (SEG)
DLQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVVGPQLGLC
Disordered region (IsUnstruct)
******************QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVVGPQ****
Disordered Region (DISOPRED)
*************************PAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVVGPQLGLC
Disordered Region (DISEMBL)
************RPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVVGPQLGLC
Disordered Region (DISPRO)
***************LNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVVGPQLGLC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DLQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVVGPQLGLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.962	0.838	0.755	0.0
Q96321	532	Importin subunit alpha-1	no	no	0.965	0.830	0.748	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.932	0.799	0.759	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.965	0.838	0.730	0.0
O04294	531	Importin subunit alpha-2	no	no	0.971	0.838	0.654	1e-171
Q76P29	516	Importin subunit alpha-B	yes	no	0.923	0.819	0.576	1e-136
O35345	536	Importin subunit alpha-7	yes	no	0.914	0.781	0.586	1e-129
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.906	0.774	0.590	1e-128
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.906	0.774	0.587	1e-128
O60684	536	Importin subunit alpha-7	yes	no	0.906	0.774	0.587	1e-128

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/445 (75%), Positives = 380/445 (85%), Gaps = 4/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ+Q  +P++   +  +  KLE LPAM+ GV+SDDN+LQLEATTQFR LLSIERSP IE+
Sbjct: 53  LQAQAPVPASA--ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEE 110

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQ+GVVPRFV+FL RED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL S 
Sbjct: 111 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 170

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL   AL+PLLAQLNEH KLSMLR ATWTLS  C+
Sbjct: 171 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 230

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQP F+Q RPALPALA+LIH +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 231 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           ELL HPSPSVL PAL TVGNIV GDD QTQCII+H A+PCLL+LL  N KKSIKK ACWT
Sbjct: 291 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 350

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGN++QIQAVI+AG+I PLVN+LQ AEFDIKKEAA AI+NAT  G+H+QIKYLV 
Sbjct: 351 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 410

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           EGCIKPLCDLL+C D +IVTVCLEGLENILKVGE +K   +  GDVN ++++++E EG +
Sbjct: 411 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLE 468

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDNN I EKAVKILE YW
Sbjct: 469 KIENLQSHDNNEIYEKAVKILEAYW 493

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/445 (74%), Positives = 378/445 (84%), Gaps = 3/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           +Q+ +  PSA   S++   KL+ L  MVAGVWSDD +LQLE+TTQFR LLSIERSP IE+
Sbjct: 53  MQALQGFPSASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEE 110

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VI AGVVPRFVEFL +EDYP +Q+EAAWALTNIASGTS +T VVIDH AVPIFV+LLASP
Sbjct: 111 VISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASP 170

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL   AL+PLL QLNEHAKLSMLR ATWTLS  C+
Sbjct: 171 SDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCR 230

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQP FDQV+PALPAL +LIH DDEEVL+DACW LSYLS GTNDKIQ VI+AGV  +LV
Sbjct: 231 GKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLV 290

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           ELL H SPSVL PAL TVGNIV GDD QTQC+IN GA+PCL  LL  NHKKSIKK ACWT
Sbjct: 291 ELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWT 350

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGN++QIQ V++A LI PLV++LQ+AEFDIKKEAA AI+NAT  G+H+QIKYLV 
Sbjct: 351 ISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVE 410

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GCIKPLCDLL+C DP+I+TVCLEGLENILKVGEAEKN G T GD+N YA+L+++ EG +
Sbjct: 411 QGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHT-GDMNYYAQLIDDAEGLE 469

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDNN I EKAVKILETYW
Sbjct: 470 KIENLQSHDNNEIYEKAVKILETYW 494

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/429 (75%), Positives = 366/429 (85%), Gaps = 2/429 (0%)

Query: 18  LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR 77
           LQ KLE LPAMV  V SDD+++QLEATTQFR LLSIERSP IE+VI  GVVPRF+ FL R
Sbjct: 73  LQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQR 132

Query: 78  EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 137
           EDYPQLQ+EAAWALTNIASGTS NT VV++ GAVPIFVKLL+SPS+DVREQAVWALGNVA
Sbjct: 133 EDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVA 192

Query: 138 ADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197
            DSP CR+LVL    L PLL QLNEHAKLSMLR ATWTLS  C+GKPQP F+QV+PAL A
Sbjct: 193 GDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSA 252

Query: 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257
           L +LIH  DEEVL+DACW LSYLS GTNDKIQ VIE+GV  RLVELL HPS SVL PAL 
Sbjct: 253 LQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALR 312

Query: 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI 317
           TVGNIV GDD QTQC+I+H A+PCLL LL +NHKKSIKK ACWTISNITAGNREQIQAVI
Sbjct: 313 TVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVI 372

Query: 318 DAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDP 377
           +A +I PLV++LQ AEFDIKKEAA AI+NAT  GTH+QIKYLV +GCIKPLCDLL+C DP
Sbjct: 373 NANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDP 432

Query: 378 KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREK 437
           +IVTVCLEGLENILKVGEAEKN G+  GDVN YA+++++ EG +KIE L+SHDN  I EK
Sbjct: 433 RIVTVCLEGLENILKVGEAEKNLGA--GDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEK 490

Query: 438 AVKILETYW 446
           AVK+LE+YW
Sbjct: 491 AVKMLESYW 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/445 (73%), Positives = 375/445 (84%), Gaps = 3/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ+Q+F PS    S +L  KLE LP ++AGVWSDD+SLQLE TTQFR LLSIER+P IE+
Sbjct: 54  LQAQQF-PSTAAVS-HLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEE 111

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQ+GVVPRFVEFL R+DYPQLQ+EAAWALTNIASGTS NT VVID+G+VPIF++LL+SP
Sbjct: 112 VIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSP 171

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGN+A DSP  R+LVL   AL+ LLAQ NE AKLSMLR ATWTLS  C+
Sbjct: 172 SDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCR 231

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQP F+Q + ALP L +LIH +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 232 GKPQPLFEQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLV 291

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           ELL H SPSVL PAL TVGNIV GDD QTQ +I+H A+PCL+ LL  N+KKSIKK ACWT
Sbjct: 292 ELLLHSSPSVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWT 351

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGNR QIQ VI+AG+I PLV +LQ+AEF+IKKEAA AI+NAT  G H+QIK+LV 
Sbjct: 352 ISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVS 411

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GCIKPLCDLL+C DP+IVTVCLEGLENILK+GEA+K+ G+T G VN YA+L++E EG +
Sbjct: 412 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEG-VNVYAQLIDEAEGLE 470

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDN  I EKAVKILETYW
Sbjct: 471 KIENLQSHDNTEIYEKAVKILETYW 495

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  600 bits (1547), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 298/455 (65%), Positives = 362/455 (79%), Gaps = 10/455 (2%)

Query: 1   DLQSQRFLPSAPRPSLNLQTKLEI---------LPAMVAGVWSDDNSLQLEATTQFRILL 51
           +LQ +RF  S    S   QT+ ++         LPAMVAG+WS+D++ QLEAT   R LL
Sbjct: 44  NLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLL 103

Query: 52  SIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAV 111
           SIE++P I +V+Q+GVVPR V+FL R+D+P+LQ+EAAWALTNIASGTS NTNV+I+ GAV
Sbjct: 104 SIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAV 163

Query: 112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRI 171
           PIF++LL+S S+DVREQAVWALGNVA DSP CR+LVL   A+ PLL+Q NE+ KLSMLR 
Sbjct: 164 PIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRN 223

Query: 172 ATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVV 231
           ATWTLS  C+GKP P F+Q +PALP L +L+   DEEVL+DACW LSYLS  +NDKIQ V
Sbjct: 224 ATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAV 283

Query: 232 IEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHK 291
           IEAGV  RL++LLGH SPSVL PAL T+GNIV GDD QTQ +++  A+PCLL LL +N+K
Sbjct: 284 IEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYK 343

Query: 292 KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG 351
           KSIKK ACWTISNITAGN +QIQAVIDAG+I  LV VLQ AEF++KKEAA  I+NAT  G
Sbjct: 344 KSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGG 403

Query: 352 THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYA 411
           TH+QIK++V +GCIKPLCDLL C D K+VTVCLE LENIL VGEAEKN G T G+ N YA
Sbjct: 404 THDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHT-GEDNLYA 462

Query: 412 RLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW 446
           ++++E EG +KIE L+SHDNN I +KAVKILET+W
Sbjct: 463 QMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  486 bits (1250), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/430 (57%), Positives = 323/430 (75%), Gaps = 7/430 (1%)

Query: 18  LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR 77
           +  +LE LP++VA + S++  L L++TT FR LLSIE+SP IE+VI+ G+VPR V+FL  
Sbjct: 62  INQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYM 121

Query: 78  EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 137
           +D+PQLQ+EAAWALTNIASGT   T VVI++GA+ +FV LL+SP DDVREQAVWALGN+A
Sbjct: 122 QDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIA 181

Query: 138 ADSPGCRNLVLREEALIPLLAQLNEHA--KLSMLRIATWTLSKLCKGKPQPPFDQVRPAL 195
            DS  CR+LVL   AL PLL+ L   A  K+SM+R ATWTLS  C+GKPQPPF+ VR +L
Sbjct: 182 GDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASL 241

Query: 196 PALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA 255
           P LA+LI+  DEEVL DACW LSYLS G+N++IQ VI+A VCR++VELLGHP+ +V TPA
Sbjct: 242 PVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPA 301

Query: 256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA 315
           L T+GNIV GDD QTQ +++  A+  LL LL  + K++I+K ACWTISNITAG++ QIQ 
Sbjct: 302 LRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQ 360

Query: 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV 375
           VIDA +I  LV +L +AEF+I+KEAA AI+NAT  GT +QI +LV +GC+KPLCDLL   
Sbjct: 361 VIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVS 420

Query: 376 DPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIR 435
           DP+I+ V LEG+ENIL  G+ E    + +  VN Y +++E+ +G  KI  L+ H N    
Sbjct: 421 DPRIINVALEGIENILVAGKKE----AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTF 476

Query: 436 EKAVKILETY 445
           EK  +I+ TY
Sbjct: 477 EKVSRIISTY 486

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 250/426 (58%), Positives = 302/426 (70%), Gaps = 7/426 (1%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMREDYPQ 82
           I   MV  ++SDD+ LQL  T +FR LLS E SP I++VI   GVV RFVEFL R +   
Sbjct: 81  ITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCT 140

Query: 83  LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
           LQ+EAAWALTNIASGTS  T +VI+ GAVPIF++LL S  +DV+EQAVWALGN+A DS  
Sbjct: 141 LQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSL 200

Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQL 201
           CR+ VL    L PLL  L +  +L+M R A W LS LC+GK P P F +V P LP L++L
Sbjct: 201 CRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRL 260

Query: 202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261
           +   D ++L+DACW LSYLS G N+KIQ VI++GVCRRLVELL H    V +PAL  VGN
Sbjct: 261 LFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGN 320

Query: 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321
           IV GDD QTQ I+N  A+PCLL LL  + K+SI+K ACWTISNITAGNR QIQAVIDA +
Sbjct: 321 IVTGDDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANI 379

Query: 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVT 381
              L+ +LQ AEF  +KEAA AI NAT  GT EQI+YLV  GCIKPLCDLL  +D KIV 
Sbjct: 380 FPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQ 439

Query: 382 VCLEGLENILKVGEAE-KNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
           V L GLENIL++GE E K +GS    VN Y  L+EE  G  KIE L+SH+N  I +KA  
Sbjct: 440 VALNGLENILRLGEQESKRSGS---GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFD 496

Query: 441 ILETYW 446
           ++E Y+
Sbjct: 497 LIEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  460 bits (1184), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/422 (59%), Positives = 300/422 (71%), Gaps = 7/422 (1%)

Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMREDYPQLQYE 86
           MV  ++SDD  LQL  T +FR LLS E SP I++VI   GVV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 87  AAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNL 146
           AAWALTNIASGTS  T +VI+ GAVPIF++LL S  +DV+EQAVWALGN+A DS  CR+ 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 147 VLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLD 205
           VL    L PLL  L +  +L+M R A W LS LC+GK P P F +V P LP L++L+   
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 206 DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG 265
           D ++L+DACW LSYLS G N+KIQ VI++GVCRRLVELL H    V +PAL  VGNIV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTG 324

Query: 266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPL 325
           DD QTQ I+N  A+PCLL LL  + K+SI+K ACWTISNITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 326 VNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE 385
           + +LQ AEF  +KEAA AI NAT  GT EQI+YLV  GCIKPLCDLL  +D KIV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 386 GLENILKVGEAE-KNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET 444
           GLENIL++GE E K +GS    VN Y  L+EE  G  KIE L+SH+N  I +KA  ++E 
Sbjct: 444 GLENILRLGEQEGKRSGS---GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 445 YW 446
           Y+
Sbjct: 501 YF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/422 (58%), Positives = 300/422 (71%), Gaps = 7/422 (1%)

Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMREDYPQLQYE 86
           MV  ++SDD+ LQL  T +FR LLS E SP I++VI    VV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 87  AAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNL 146
           AAWALTNIASGTS  T +VI+ GAVPIF++LL S  +DV+EQAVWALGN+A DS  CR+ 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 147 VLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLD 205
           VL    L PLL  L +  +L+M R A W LS LC+GK P P F +V P LP L++L+   
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 206 DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG 265
           D ++L+DACW LSYLS G N+KIQ VI++GVCRRLVELL H    V +PAL  VGNIV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPL 325
           DD QTQ I+N  A+PCLL LL  + K+SI+K ACWTISNITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 326 VNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE 385
           + +LQ AEF  +KEAA AI NAT  GT EQI+YLV  GCIKPLCDLL  +D KIV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 386 GLENILKVGEAE-KNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET 444
           GLENIL++GE E K +GS    VN Y  L+EE  G  KIE L+SH+N  I +KA  ++E 
Sbjct: 444 GLENILRLGEQEGKRSGS---GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 445 YW 446
           Y+
Sbjct: 501 YF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/422 (58%), Positives = 300/422 (71%), Gaps = 7/422 (1%)

Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMREDYPQLQYE 86
           MV  ++SDD+ LQL  T +FR LLS E SP I++VI    VV RFVEFL R +   LQ+E
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 87  AAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNL 146
           AAWALTNIASGTS  T +VI+ GAVPIF++LL S  +DV+EQAVWALGN+A DS  CR+ 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 147 VLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLD 205
           VL    L PLL  L +  +L+M R A W LS LC+GK P P F +V P LP L++L+   
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 206 DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG 265
           D ++L+DACW LSYLS G N+KIQ VI++GVCRRLVELL H    V +PAL  VGNIV G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPL 325
           DD QTQ I+N  A+PCLL LL  + K+SI+K ACWTISNITAGNR QIQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 326 VNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE 385
           + +LQ AEF  +KEAA AI NAT  GT EQI+YLV  GCIKPLCDLL  +D KIV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 386 GLENILKVGEAE-KNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET 444
           GLENIL++GE E K +GS    VN Y  L+EE  G  KIE L+SH+N  I +KA  ++E 
Sbjct: 444 GLENILRLGEQEGKRSGS---GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 500

Query: 445 YW 446
           Y+
Sbjct: 501 YF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
356556046	531	PREDICTED: importin subunit alpha-1-like	0.969	0.836	0.8	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.967	0.835	0.793	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.969	0.836	0.793	0.0
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.965	0.835	0.797	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.967	0.837	0.791	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.967	0.835	0.784	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.965	0.830	0.786	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.954	0.821	0.790	0.0
224110258	529	predicted protein [Populus trichocarpa]	0.967	0.837	0.782	0.0
449464730	530	PREDICTED: importin subunit alpha-1-like	0.965	0.833	0.786	0.0

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/445 (80%), Positives = 393/445 (88%), Gaps = 1/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ+Q+  P+  + S  ++ KLE LPAMVAGVWSDDNS QLEATTQFR LLSIERSP IE+
Sbjct: 53  LQAQQQFPTPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEE 112

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQAGVVPRFVEFL+RED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL+SP
Sbjct: 113 VIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSP 172

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL   ALIPLLAQLNEHAKLSMLR ATWTLS  C+
Sbjct: 173 SDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCR 232

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQPPF+QVR ALPAL +L+  +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 233 GKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           +LL HPSPSVL PAL TVGNIV GDD QTQ IINHGA+PCLL+LL HNHKKSIKK ACWT
Sbjct: 293 QLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWT 352

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGNR+QIQAVI+AGLI PLVN+LQ+AEFDIKKEAA AI+NAT  GTHEQIKYLV 
Sbjct: 353 ISNITAGNRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVS 412

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GCIKPLCDLL+C DP+IVTVCLEGLENILKVGEAEK+ G+T GDVN YA++++E EG +
Sbjct: 413 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNT-GDVNLYAQMIDEAEGLE 471

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDNN I EKAVKILETYW
Sbjct: 472 KIENLQSHDNNEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/445 (79%), Positives = 394/445 (88%), Gaps = 2/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ+Q+  P AP  +  +  KLE LPAMVAGVWSDDNS+QLEATTQFR LLSIERSP IE+
Sbjct: 53  LQAQQQFP-APLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEE 111

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQAGVVPRFVEFL+RED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL+SP
Sbjct: 112 VIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSP 171

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL + AL+PLLAQLNEHAKLSMLR ATWTLS  C+
Sbjct: 172 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCR 231

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQPPF+QVRPALPAL +L+  +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 232 GKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLV 291

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           +LL HPSPSVL PAL TVGNIV GDD QTQCIINHGA+PCLL LL +NHKKSIKK ACWT
Sbjct: 292 QLLIHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWT 351

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGN+EQIQ VI+AGL+ PLVN+LQ+AEFDIKKEAA AI+NAT  G HEQIKYLV 
Sbjct: 352 ISNITAGNKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKYLVS 411

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GCIKPLCDLL+C DP+IVTVCLEGLENILKVGEAEK+ G+T GDVN+YA+++++ EG +
Sbjct: 412 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNT-GDVNEYAQMIDDAEGLE 470

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDNN I EKAVKILETYW
Sbjct: 471 KIENLQSHDNNEIYEKAVKILETYW 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/445 (79%), Positives = 393/445 (88%), Gaps = 1/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ+Q+  P+  + +  ++ KLE LPAMVAGVWSDDNS QLEATTQFR LLSIERSP IE+
Sbjct: 53  LQAQQQFPTPLQAASIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEE 112

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQAGVVPRFVEFL+RED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL+SP
Sbjct: 113 VIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSP 172

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL   ALIPLLAQLNEHAKLSMLR ATWTLS  C+
Sbjct: 173 SDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCR 232

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQPPF+QVR ALPAL +L+  +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 233 GKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           +LL HPSPSVL PAL TVGNIV GDD QTQ IINHGA+PCLL+LL HNHKKSIKK ACWT
Sbjct: 293 QLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWT 352

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGNR+QIQAV++AGLI PLVN+LQ+AEFDIKKEAA AI+NAT  GTHEQIKYLV 
Sbjct: 353 ISNITAGNRDQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVS 412

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GCIKPLCDLL+C DP+IVTVCLEGLENILKVGEAEK+ G++ GDVN YA++++E EG +
Sbjct: 413 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSMGNS-GDVNLYAQMIDEAEGLE 471

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDNN I EKAVKILETYW
Sbjct: 472 KIENLQSHDNNEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/445 (79%), Positives = 393/445 (88%), Gaps = 3/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ+Q+F P+A   S  ++ KLE LP+MVAGVWSD++SLQLEATTQFR LLSIERSP IE+
Sbjct: 53  LQAQQF-PAAAHAS-TVEKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEE 110

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQ+GVVPRFVEFL+RED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL SP
Sbjct: 111 VIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSP 170

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL   ALIPLLAQLNEHAKLSMLR ATWTLS  C+
Sbjct: 171 SDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCR 230

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQPPFDQV+PALPAL +L+H  DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 231 GKPQPPFDQVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 290

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           ELL HPSPSVL PAL TVGNIV GDD QTQ IINHGA+PCLL+LL HNHKKSIKK ACWT
Sbjct: 291 ELLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWT 350

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGN+EQIQAVI+AG+I PLV++LQ AEFDIKKEAA AI+NAT  GTHEQIKYLV 
Sbjct: 351 ISNITAGNKEQIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVS 410

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GCIKPLCDLL+C DP+IVTVCLEGLENILKVGEAEK  G++ GDVN YA+L+++ EG +
Sbjct: 411 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKTLGNS-GDVNYYAQLIDDAEGLE 469

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDNN I EKAVKILETYW
Sbjct: 470 KIENLQSHDNNEIYEKAVKILETYW 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/445 (79%), Positives = 393/445 (88%), Gaps = 2/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           L +Q+F P+A   S N++ KLE LP+MV+GVWSDD++LQLEATTQFR LLSIERSP IE+
Sbjct: 53  LLAQQF-PAAVLSSSNMEKKLESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEE 111

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQAGVVPRFVE L+RED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL SP
Sbjct: 112 VIQAGVVPRFVELLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSP 171

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL   ALIPLLAQLNEHAKLSMLR ATWTLS  C+
Sbjct: 172 SDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCR 231

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQP F++VRPALPAL +L+H  DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 232 GKPQPLFEKVRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 291

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           ELL HPSPSVL PAL TVGNIV GDD QTQCIIN GA+PCLL+LL HNHKKSIKK ACWT
Sbjct: 292 ELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWT 351

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGN+EQIQAVI+AGLI PLVN+LQ+AEFDIKKEAA A++NAT  GTHEQIK+LV 
Sbjct: 352 ISNITAGNKEQIQAVIEAGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVS 411

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GCIKPLCDLL+C DP+IVTVCLEGLENILKVGEAEKN G++ GDVN YA+++++ EG +
Sbjct: 412 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNS-GDVNFYAQMIDDAEGLE 470

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDNN I EKAVKILETYW
Sbjct: 471 KIENLQSHDNNEIYEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/445 (78%), Positives = 390/445 (87%), Gaps = 2/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ+ + LP AP  +  +   LE LPAMVAGVWS+DNSLQLEATTQFR LLSIERSP IE+
Sbjct: 53  LQAHQQLP-APLQNSTVDKNLESLPAMVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEE 111

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQAGVVPRFVEFL+RED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL+SP
Sbjct: 112 VIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSP 171

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL   AL+PLLAQLNEHAKLSMLR ATWTLS  C+
Sbjct: 172 SDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCR 231

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQPPF+QVRPALPAL +L+  +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RL+
Sbjct: 232 GKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLM 291

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           +LL HPSPSVL PAL TVGNIV GDD QTQCIINHGA+PCLL LL +NHKKSIKK ACWT
Sbjct: 292 QLLMHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWT 351

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGN+EQIQ VI+AGL+ PLVN+LQ AEFDIKKEA+ AI+NAT  GTH+QIKYLV 
Sbjct: 352 ISNITAGNKEQIQTVIEAGLVAPLVNLLQSAEFDIKKEASWAISNATSGGTHDQIKYLVS 411

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GC+KPLCDLL+C DP+IVTVCLEGLENILKVGEAEK+ G+T GDVN YA++++E EG +
Sbjct: 412 QGCVKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNT-GDVNVYAQMIDEAEGLE 470

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDNN I EK VKILETYW
Sbjct: 471 KIENLQSHDNNEIYEKVVKILETYW 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/445 (78%), Positives = 391/445 (87%), Gaps = 3/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ Q+ +P++   SL ++ KLE LP+MV GVW+DDN+LQLEATTQFR LLSIERSP IE+
Sbjct: 55  LQPQQ-MPASVHSSL-VEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEE 112

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQ GVV RFVEFLMRED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLLASP
Sbjct: 113 VIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 172

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL   AL+PLLAQLNEHAKLSMLR ATWTLS  C+
Sbjct: 173 SDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCR 232

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQPPFDQV+PALPALA+LIH +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 233 GKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           ELL HPSPSVL PAL TVGNIV GDD QTQ IINH A+PCLL LL +N+KKSIKK ACWT
Sbjct: 293 ELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWT 352

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGN++QIQAVI+A LI PLVN+LQ+AEFDIKKEAA AI+NAT  G+HEQIK+LV 
Sbjct: 353 ISNITAGNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVS 412

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GCIKPLCDLL+C DP+IVTVCLEGLENILKVGEA+KN G+T GDVN YA++++E EG +
Sbjct: 413 QGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNT-GDVNLYAQMIDEAEGLE 471

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDN  I EKAVKILETYW
Sbjct: 472 KIENLQSHDNTEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/439 (79%), Positives = 387/439 (88%), Gaps = 2/439 (0%)

Query: 8   LPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGV 67
           +P++   SL ++ KLE LP+MV GVW+DDN+LQLEATTQFR LLSIERSP IE+VIQ GV
Sbjct: 60  IPASVHSSL-VEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGV 118

Query: 68  VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVRE 127
           V RFVEFLMRED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLLASPSDDVRE
Sbjct: 119 VSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 178

Query: 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP 187
           QAVWALGNVA DSP CR+LVL   AL+PLLAQLNEHAKLSMLR ATWTLS  C+GKPQPP
Sbjct: 179 QAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 238

Query: 188 FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP 247
           FDQV+PALPALA+LIH +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLVELL HP
Sbjct: 239 FDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP 298

Query: 248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307
           SPSVL PAL TVGNIV GDD QTQ IINH A+PCLL LL +N+KKSIKK ACWTISNITA
Sbjct: 299 SPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITA 358

Query: 308 GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKP 367
           GN++QIQAVI+A LI PLVN+LQ+AEFDIKKEAA AI+NAT  G+HEQIK+LV +GCIKP
Sbjct: 359 GNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKP 418

Query: 368 LCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK 427
           LCDLL+C DP+IVTVCLEGLENILKVGEA+KN G+T GDVN YA++++E EG +KIE L+
Sbjct: 419 LCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNT-GDVNLYAQMIDEAEGLEKIENLQ 477

Query: 428 SHDNNGIREKAVKILETYW 446
           SHDN  I EKAVKILETYW
Sbjct: 478 SHDNTEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110258|ref|XP_002315463.1| predicted protein [Populus trichocarpa] gi|222864503|gb|EEF01634.1| predicted protein [Populus trichocarpa]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/445 (78%), Positives = 389/445 (87%), Gaps = 2/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ+Q+F P A   S N++ KLE LP+MVAGVWS+D +LQLE+TTQFR LLSIERSP IE+
Sbjct: 53  LQAQQF-PPAILSSSNVEKKLENLPSMVAGVWSEDGNLQLESTTQFRKLLSIERSPPIEE 111

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQAGVVPRFVEFL+RED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL SP
Sbjct: 112 VIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSP 171

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL   ALIPLLAQLNEHAKLSMLR ATWTLS  C+
Sbjct: 172 SDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCR 231

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQPPF+QVRPALPAL +L+H  DEEVL+D+CW LSYLS GT+DKIQ VIEAGVC RLV
Sbjct: 232 GKPQPPFEQVRPALPALERLVHSTDEEVLTDSCWALSYLSDGTDDKIQAVIEAGVCPRLV 291

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           ELL HPSPSVL PAL TVGNIV GDD QTQCII  GA+PCLL+LL HNHKKSIKK ACWT
Sbjct: 292 ELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIITTGALPCLLSLLTHNHKKSIKKEACWT 351

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGN+EQIQAVI+ GLI PLVN+LQ+AEFDIKKEAA A++NAT  GTHEQIK+LV 
Sbjct: 352 ISNITAGNKEQIQAVIENGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVS 411

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GCIKPLCDLL+  DP+IVTV LEGLENILKVGEAEKN G++ GD N YA+++++ EG +
Sbjct: 412 QGCIKPLCDLLVSPDPRIVTVSLEGLENILKVGEAEKNLGNS-GDANFYAQMIDDAEGLE 470

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDNN I EKAVKILETYW
Sbjct: 471 KIENLQSHDNNEIYEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464730|ref|XP_004150082.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus] gi|449501502|ref|XP_004161385.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/445 (78%), Positives = 391/445 (87%), Gaps = 3/445 (0%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ+Q+F PSA   S  ++ KLE LP+MVAGVWSD++SLQLEATTQFR LLSIERSP IE+
Sbjct: 53  LQAQQF-PSAVHTS-TVEKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEE 110

Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQ+GVVPRFVEFL+RED+PQLQ+EAAWALTNIASGTS +T VVIDHGAVPIFVKLLASP
Sbjct: 111 VIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLASP 170

Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVLR  ALIPLL+QLNEHAKLSMLR ATWTLS  C+
Sbjct: 171 SDDVREQAVWALGNVAGDSPTCRDLVLRHGALIPLLSQLNEHAKLSMLRNATWTLSNFCR 230

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQPPFDQV+PALPAL +L+H +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 231 GKPQPPFDQVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLV 290

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           +LL HPSPSVL PAL TVGNIV GDD QTQ I+N GA+ CLL +   NHKKSIKK ACWT
Sbjct: 291 QLLLHPSPSVLIPALRTVGNIVTGDDIQTQWIVNDGALSCLLGIFTQNHKKSIKKEACWT 350

Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGN+EQIQAVI+A LI PLVN+LQ+AEFDIKKEAA AI+NAT  GTHEQIKYLV 
Sbjct: 351 ISNITAGNKEQIQAVIEARLIPPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVS 410

Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           +GCIKPLCDLL+C DP+IVTVCLEGLENILKVGEAEKN G T GDVN YA+++++ EG +
Sbjct: 411 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG-TNGDVNLYAQMIDDAEGLE 469

Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDN+ I EKAVKILETYW
Sbjct: 470 KIENLQSHDNHEIYEKAVKILETYW 494

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.967	0.828	0.770	4.5e-178
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.965	0.830	0.748	2.1e-173
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.947	0.806	0.724	7.1e-164
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.971	0.838	0.654	3.1e-154
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.941	0.799	0.669	2.6e-150
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.921	0.813	0.618	3.8e-133
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.914	0.793	0.624	4.4e-132
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.932	0.772	0.598	6.8e-127
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.923	0.819	0.576	4.9e-124
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.921	0.765	0.595	1.7e-123

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1729 (613.7 bits), Expect = 4.5e-178, P = 4.5e-178
 Identities = 342/444 (77%), Positives = 382/444 (86%)

Query:     3 QSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDV 62
             Q  +F PS    S  ++ KLE LPAMV GVWSDD SLQLEATTQFR LLSIERSP IE+V
Sbjct:    57 QLPQFAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEV 116

Query:    63 IQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS 122
             I AGVVPRFVEFL REDYPQLQ+EAAWALTNIASGTS NT VVI+HGAVPIFV+LLAS S
Sbjct:   117 IDAGVVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQS 176

Query:   123 DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182
             DDVREQAVWALGNVA DSP CR+LVL + ALIPLL+QLNEHAKLSMLR ATWTLS  C+G
Sbjct:   177 DDVREQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRG 236

Query:   183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE 242
             KPQPPFDQVRPALPAL +LIH  DEEVL+DACW LSYLS GTNDKIQ VIEAGV  RLVE
Sbjct:   237 KPQPPFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVE 296

Query:   243 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTI 302
             LL H SPSVL PAL ++GNIV GDD QTQC+I+HGA+  LL+LL HNHKKSIKK ACWTI
Sbjct:   297 LLQHQSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTI 356

Query:   303 SNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVRE 362
             SNITAGNR+QIQAV +AGLI PLVN+LQ+AEFDIKKEAA AI+NAT  G+ +QIKY+V +
Sbjct:   357 SNITAGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQ 416

Query:   363 GCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKK 422
             G +KPLCDLL+C DP+I+TVCLEGLENILKVGEAEK TG+T GDVN YA+L+++ EG +K
Sbjct:   417 GVVKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNT-GDVNFYAQLIDDAEGLEK 475

Query:   423 IEGLKSHDNNGIREKAVKILETYW 446
             IE L+SHDN+ I EKAVKILETYW
Sbjct:   476 IENLQSHDNSEIYEKAVKILETYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
 Identities = 333/445 (74%), Positives = 378/445 (84%)

Query:     2 LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
             +Q+ +  PSA   S++   KL+ L  MVAGVWSDD +LQLE+TTQFR LLSIERSP IE+
Sbjct:    53 MQALQGFPSASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEE 110

Query:    62 VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
             VI AGVVPRFVEFL +EDYP +Q+EAAWALTNIASGTS +T VVIDH AVPIFV+LLASP
Sbjct:   111 VISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASP 170

Query:   122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
             SDDVREQAVWALGNVA DSP CR+LVL   AL+PLL QLNEHAKLSMLR ATWTLS  C+
Sbjct:   171 SDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCR 230

Query:   182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
             GKPQP FDQV+PALPAL +LIH DDEEVL+DACW LSYLS GTNDKIQ VI+AGV  +LV
Sbjct:   231 GKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLV 290

Query:   242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
             ELL H SPSVL PAL TVGNIV GDD QTQC+IN GA+PCL  LL  NHKKSIKK ACWT
Sbjct:   291 ELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWT 350

Query:   302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
             ISNITAGN++QIQ V++A LI PLV++LQ+AEFDIKKEAA AI+NAT  G+H+QIKYLV 
Sbjct:   351 ISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVE 410

Query:   362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
             +GCIKPLCDLL+C DP+I+TVCLEGLENILKVGEAEKN G T GD+N YA+L+++ EG +
Sbjct:   411 QGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHT-GDMNYYAQLIDDAEGLE 469

Query:   422 KIEGLKSHDNNGIREKAVKILETYW 446
             KIE L+SHDNN I EKAVKILETYW
Sbjct:   470 KIENLQSHDNNEIYEKAVKILETYW 494

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
 Identities = 315/435 (72%), Positives = 362/435 (83%)

Query:    12 PRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRF 71
             P+ +  ++ +LE +P MV GV+SDD   QLEATTQFR LLSIERSP I++VI+AGV+PRF
Sbjct:    68 PQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRF 127

Query:    72 VEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVW 131
             VEFL R D+PQLQ+EAAWALTN+ASGTS +T VVI+ GAVPIFVKLL S SDDVREQAVW
Sbjct:   128 VEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVW 187

Query:   132 ALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV 191
             ALGNVA DSP CRNLVL   AL PLLAQLNE++KLSMLR ATWTLS  C+GKP  PF+QV
Sbjct:   188 ALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQV 247

Query:   192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSV 251
             +PALP L QLI+L+DEEVL+DACW LSYLS G NDKIQ VIEAGVC RLVELLGH SP+V
Sbjct:   248 KPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLGHQSPTV 307

Query:   252 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE 311
             L PAL TVGNIV GDD QTQ II  G +P L  LL  NHKKSIKK ACWTISNITAGN+ 
Sbjct:   308 LIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISNITAGNKL 367

Query:   312 QIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL 371
             QI+AV+ AG+I+PLV++LQ+AEFDIKKEAA AI+NAT  G+HEQI+YLV +GCIKPLCDL
Sbjct:   368 QIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDL 427

Query:   372 LLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDN 431
             L+C DP+IVTVCLEGLENILKVGEA+K  G   G VN YA+++EE +G  K+E L+SHDN
Sbjct:   428 LICPDPRIVTVCLEGLENILKVGEADKEMGLNSG-VNLYAQIIEESDGLDKVENLQSHDN 486

Query:   432 NGIREKAVKILETYW 446
             N I EKAVKILE YW
Sbjct:   487 NEIYEKAVKILERYW 501

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1504 (534.5 bits), Expect = 3.1e-154, P = 3.1e-154
 Identities = 298/455 (65%), Positives = 362/455 (79%)

Query:     1 DLQSQRFLPSAPRPSLNLQTKLEI---------LPAMVAGVWSDDNSLQLEATTQFRILL 51
             +LQ +RF  S    S   QT+ ++         LPAMVAG+WS+D++ QLEAT   R LL
Sbjct:    44 NLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLL 103

Query:    52 SIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAV 111
             SIE++P I +V+Q+GVVPR V+FL R+D+P+LQ+EAAWALTNIASGTS NTNV+I+ GAV
Sbjct:   104 SIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAV 163

Query:   112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRI 171
             PIF++LL+S S+DVREQAVWALGNVA DSP CR+LVL   A+ PLL+Q NE+ KLSMLR 
Sbjct:   164 PIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRN 223

Query:   172 ATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVV 231
             ATWTLS  C+GKP P F+Q +PALP L +L+   DEEVL+DACW LSYLS  +NDKIQ V
Sbjct:   224 ATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAV 283

Query:   232 IEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHK 291
             IEAGV  RL++LLGH SPSVL PAL T+GNIV GDD QTQ +++  A+PCLL LL +N+K
Sbjct:   284 IEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYK 343

Query:   292 KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG 351
             KSIKK ACWTISNITAGN +QIQAVIDAG+I  LV VLQ AEF++KKEAA  I+NAT  G
Sbjct:   344 KSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGG 403

Query:   352 THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYA 411
             TH+QIK++V +GCIKPLCDLL C D K+VTVCLE LENIL VGEAEKN G T G+ N YA
Sbjct:   404 THDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHT-GEDNLYA 462

Query:   412 RLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW 446
             ++++E EG +KIE L+SHDNN I +KAVKILET+W
Sbjct:   463 QMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
 Identities = 290/433 (66%), Positives = 349/433 (80%)

Query:    15 SLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEF 74
             SL  +T+LE +  M+AGV S+D  LQLEAT  FR LLSIER+P I +V+Q+GVVP  V+F
Sbjct:    68 SLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQF 127

Query:    75 LMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALG 134
             L R+D+ QLQ+EAAWALTNIASGTS NT V+ID GAVP+FVKLL+S S++VREQAVWALG
Sbjct:   128 LSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALG 187

Query:   135 NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ-VRP 193
             NVA DSP CR+ VL  EA++ LLAQ +EH+KLSMLR ATWTLS  C+GKPQP F+Q  + 
Sbjct:   188 NVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKA 247

Query:   194 ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253
             ALPAL +L+H  DEEVL+DA W LSYLS GTN+KIQ VI+AGV  RLV+LL HPSPSVL 
Sbjct:   248 ALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLI 307

Query:   254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI 313
             PAL T+GNIV GDD QTQ +I+  A+P LL LL + +KKSIKK ACWTISNITAGN  QI
Sbjct:   308 PALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQI 367

Query:   314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373
             Q V  AG+I PL+N+L+  EF+IKKEA  AI+NAT  G H+QIK+LV +GCI+PLCDLL 
Sbjct:   368 QEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLP 427

Query:   374 CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNG 433
             C DP++VTV LEGLENILKVGEAEKN G+T G+ N YA+++E+ +G  KIE L+SHDNN 
Sbjct:   428 CPDPRVVTVTLEGLENILKVGEAEKNLGNT-GNDNLYAQMIEDADGLDKIENLQSHDNNE 486

Query:   434 IREKAVKILETYW 446
             I EKAVKILE+YW
Sbjct:   487 IYEKAVKILESYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
 Identities = 264/427 (61%), Positives = 321/427 (75%)

Query:    19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE 78
             ++ LEI   M+ GV+SDD SLQLE TT+FR++LS +RSP  ++VI++GVVPRFVEFL ++
Sbjct:    67 ESLLEIAN-MITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVPRFVEFLKKD 125

Query:    79 DYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA 138
             D P+LQ+EAAWALTNIASG S +T VVIDHG VP+FV+LLASP DDVREQA+W LGNVA 
Sbjct:   126 DNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIWGLGNVAG 185

Query:   139 DSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPAL 198
             DS  CR+ VL   A IPLL QLN HA LS+LR ATWTLS   +GKP PPFD V+  LP L
Sbjct:   186 DSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLVKHVLPVL 245

Query:   199 AQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258
              +L++ DDE+VL DACW LS LS  +N+ IQ VIEAGV  RLVELL H SP VL PAL  
Sbjct:   246 KRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASPVVLVPALRC 305

Query:   259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID 318
             +GNIV G+  QT C+IN G +P L  LL  NH + I++ ACWTISNITAG  EQIQ+VID
Sbjct:   306 IGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGLEEQIQSVID 365

Query:   319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK 378
             A LI  LVN+ Q AEFDIKKEA  AI+NA+V G+  QIKYLV + CIK LCD+L+C D +
Sbjct:   366 ANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLR 425

Query:   379 IVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKA 438
             I+ V L GLE IL  GE +KN    + DVN Y++++E+ EG +KIE L+ H NN I EKA
Sbjct:   426 IILVSLGGLEMILIAGEVDKN----LRDVNCYSQMIEDAEGLEKIENLQHHGNNEIYEKA 481

Query:   439 VKILETY 445
             VKIL+TY
Sbjct:   482 VKILQTY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 266/426 (62%), Positives = 323/426 (75%)

Query:    28 MVAGVWSDDNSLQLEATTQFRILLSIER-SPRIEDVIQAGVVPRFVEFLMREDYPQLQYE 86
             +++ +WSD+  L +EATTQ R LL  E  + R+E+VIQAG+VPRFVEFL  +D PQLQ+E
Sbjct:    64 LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFE 123

Query:    87 AAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNL 146
             AAWALTNIASGTS NT VVIDHGAV I V+LL SP D VREQ VWALGN++ DSP CR++
Sbjct:   124 AAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDI 183

Query:   147 VLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD 206
             VL   AL  LL QLN  AKLSML  A WTLS LC+GKPQPPFDQV  ALPALAQLI LDD
Sbjct:   184 VLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDD 243

Query:   207 EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGD 266
             +E+L+  CW L YLS G+N+KIQ VIEA VC RL+ L  H SPSV+TPAL T+GNIV G+
Sbjct:   244 KELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGN 303

Query:   267 DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLV 326
             D QTQ II+  A+PCL+ LL  ++ K+I+K ACWT+SNITAG + QIQAV DA +   LV
Sbjct:   304 DSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALV 363

Query:   327 NVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEG 386
             N+LQ++E D+KKEAA AI NA   G+++QI +LV++ CIKPLCDLL C D ++V VCLE 
Sbjct:   364 NLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEA 423

Query:   387 LENILKVGE------AEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
             L+ ILKVGE      AE        +VN +A+L+EE EG +KIEGL+SH+NN I E AVK
Sbjct:   424 LKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAVK 483

Query:   441 ILETYW 446
             ILETYW
Sbjct:   484 ILETYW 489

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
 Identities = 259/433 (59%), Positives = 321/433 (74%)

Query:    18 LQTKLEI-LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLM 76
             ++++L + LP MV GV+SD    Q++ATT+FR LLS ER+P IE VI+ GVV RFVEFL 
Sbjct:    76 IESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL- 134

Query:    77 REDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 136
             R  +  +Q+EAAWALTNIASG++  T VVI+ GAVPIFV+LL+SP  DVREQAVWALGN+
Sbjct:   135 RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNI 194

Query:   137 AADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPAL 195
             A DSP CR+ VL   AL PLL  +N+  K+SMLR ATWTLS  C+GK PQP ++ + PAL
Sbjct:   195 AGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPAL 254

Query:   196 PALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA 255
             P LA+LI++ D+EVL DACW +SYLS G N+KIQ VIEAG+ RRLVELL H S SV TPA
Sbjct:   255 PVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPA 314

Query:   256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA 315
             L +VGNIV GDD QTQ IIN GA+P LL+LL  + K  I+K ACWTISNITAGN  QIQ+
Sbjct:   315 LRSVGNIVTGDDVQTQVIINCGALPALLSLL-SSTKDGIRKEACWTISNITAGNSSQIQS 373

Query:   316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLL 373
             VIDAG+I PLV++L + +F  +KEA  AI+NAT  G    +QI+YLV +GCIKPLCDLL 
Sbjct:   374 VIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLA 433

Query:   374 CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNG 433
             C D KI+ V L+GLENILKVGE +K  G     VN+YA  +EE  G +KI   +++ N  
Sbjct:   434 CPDNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEE 493

Query:   434 IREKAVKILETYW 446
             I  KA  I+E Y+
Sbjct:   494 IYMKAYNIIEKYF 506

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
 Identities = 248/430 (57%), Positives = 323/430 (75%)

Query:    18 LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR 77
             +  +LE LP++VA + S++  L L++TT FR LLSIE+SP IE+VI+ G+VPR V+FL  
Sbjct:    62 INQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYM 121

Query:    78 EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 137
             +D+PQLQ+EAAWALTNIASGT   T VVI++GA+ +FV LL+SP DDVREQAVWALGN+A
Sbjct:   122 QDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIA 181

Query:   138 ADSPGCRNLVLREEALIPLLAQLNEHA--KLSMLRIATWTLSKLCKGKPQPPFDQVRPAL 195
              DS  CR+LVL   AL PLL+ L   A  K+SM+R ATWTLS  C+GKPQPPF+ VR +L
Sbjct:   182 GDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASL 241

Query:   196 PALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA 255
             P LA+LI+  DEEVL DACW LSYLS G+N++IQ VI+A VCR++VELLGHP+ +V TPA
Sbjct:   242 PVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPA 301

Query:   256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA 315
             L T+GNIV GDD QTQ +++  A+  LL LL  + K++I+K ACWTISNITAG++ QIQ 
Sbjct:   302 LRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQ 360

Query:   316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV 375
             VIDA +I  LV +L +AEF+I+KEAA AI+NAT  GT +QI +LV +GC+KPLCDLL   
Sbjct:   361 VIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVS 420

Query:   376 DPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIR 435
             DP+I+ V LEG+ENIL  G+ E    + +  VN Y +++E+ +G  KI  L+ H N    
Sbjct:   421 DPRIINVALEGIENILVAGKKE----AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTF 476

Query:   436 EKAVKILETY 445
             EK  +I+ TY
Sbjct:   477 EKVSRIISTY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 255/428 (59%), Positives = 313/428 (73%)

Query:    23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ 82
             E LP MV GV+S+    Q++ATT+FR LLS ER+P IE+VI+ GVV RFVEFL R  +  
Sbjct:    81 EDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTL 139

Query:    83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
             +Q+EAAWALTNIASG++  T VVI+ GAVPIFV+LL SP  DVREQAVWALGN+A DSP 
Sbjct:   140 VQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQ 199

Query:   143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQL 201
             CR+ VL   AL PLL  L +  KLSMLR ATWTLS  C+GK PQP +  + PALP LA+L
Sbjct:   200 CRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKL 259

Query:   202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261
             ++  D+EVL DACW +SYLS G+NDKIQ VIEAG+ RRLVELL H S SV TPAL +VGN
Sbjct:   260 VYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGN 319

Query:   262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321
             IV GDD QTQ IIN GA+PCLL+LL  N K  I+K ACWTISNITAGN  QIQ+V+DA +
Sbjct:   320 IVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAGNSAQIQSVVDANI 378

Query:   322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKI 379
             I PL+++L + +   +KEA  AI+NAT  G    +QI+YLV +GCIKPLCDLL C D KI
Sbjct:   379 IPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKI 438

Query:   380 VTVCLEGLENILKVGEAEKNT-GSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKA 438
             + V L+GLENILKVG+ +K   G     +N+YA  +EE  G +KI   +++ N  I  KA
Sbjct:   439 IQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKA 498

Query:   439 VKILETYW 446
               I+E Y+
Sbjct:   499 FNIIEKYF 506

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5868	0.9148	0.7817	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4360	0.9148	0.8151	yes	no
O14063	IMA1_SCHPO	No assigned EC number	0.5247	0.9126	0.7712	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5876	0.9061	0.7742	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5539	0.9104	0.7693	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.7483	0.9650	0.8308	no	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5767	0.9235	0.8197	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7303	0.9650	0.8387	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5876	0.9061	0.7742	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5900	0.9061	0.7742	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7550	0.9628	0.8384	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-173
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-27
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-27
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-24
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-20
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-19
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-17
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-15
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-07
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	7e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-05
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-05
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	6e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	6e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.003
pfam01749	97	pfam01749, IBB, Importin beta binding domain	0.003

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  497 bits (1280), Expect = e-173
 Identities = 242/433 (55%), Positives = 298/433 (68%), Gaps = 9/433 (2%)

Query: 19  QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE 78
           Q     LP +   ++SDD   QL+A  +FR LLS E SP I+ VI AGVVPRFVEF+   
Sbjct: 67  QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI 126

Query: 79  DYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA 138
               LQ+EAAWALTNIASGT+  T VV+D GAVP+F++LL+S  DDVREQAVWALGN+A 
Sbjct: 127 QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAG 186

Query: 139 DSPGCRNLVLREEALIPLLAQLNEHA-KLSMLRIATWTLSKLCKGK-PQPPFDQVRPALP 196
           DS GCR+ VL+  AL PLL  L   A  +SMLR ATWTLS LC+GK P P +  +  ALP
Sbjct: 187 DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALP 246

Query: 197 ALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPAL 256
            LA+LI+  D EVL DACW +SYLS G N+KIQ V++ G+  RLVELL H S  + TPAL
Sbjct: 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306

Query: 257 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV 316
            +VGNIV G D QTQ IIN GA+    +LL  + K++I+K ACWTISNITAGN EQIQAV
Sbjct: 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTEQIQAV 365

Query: 317 IDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLC 374
           IDA LI PL+++L  AE+ IKKEA  AI+NAT  G +  + I+YLV +G IKPLCDLL  
Sbjct: 366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDV 425

Query: 375 VDPKIVTVCLEGLENILKVGEAEK-NTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNG 433
           VD KI+ V L+ +ENILKVGE ++   G  I   N YA  VE+  G   I GL+   N  
Sbjct: 426 VDNKIIEVALDAIENILKVGEQDRLRYGKNI---NIYAVYVEKAGGMDAIHGLQDSVNRT 482

Query: 434 IREKAVKILETYW 446
           I +KA  I+E ++
Sbjct: 483 IYDKAYSIIEKFF 495

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  106 bits (266), Expect = 1e-27
 Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 60  EDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA 119
           E VIQAG +P  V  L   D   +Q EAAWAL+N+++G + N   V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 120 SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179
           S  ++V + A+WAL N+AA     + +VL     +P L  L + +   + + AT  LS L
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 180 C 180
            
Sbjct: 119 A 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  106 bits (266), Expect = 1e-27
 Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 194 ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253
            LPAL  L+   DE V  +A W LS LS G ND IQ V+EAG    LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307
            ALW + N+  G +     ++  G VP L+ LL  +  + I+K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 97.4 bits (243), Expect = 2e-24
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 1/118 (0%)

Query: 229 QVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 288
           + VI+AG    LV LL     +V   A W + N+  G++   Q ++  G +P L+ LL  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 289 NHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
             ++ + K A W + N+ AG  +    V++AG +  LVN+L  +  DI+K A  A++N
Sbjct: 61  EDEE-VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSN 117

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 85.4 bits (212), Expect = 4e-20
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 2/118 (1%)

Query: 21  KLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY 80
           +   LPA+V+ + S D ++Q EA      L S   +  I+ V++AG +P  V+ L  ED 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED- 62

Query: 81  PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA 138
            ++   A WAL N+A+G   N  +V++ G VP  V LL S ++D+++ A  AL N+A+
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 82.0 bits (203), Expect = 7e-19
 Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA--LPALAQLIH 203
             + +   +P L  L   +  ++ R A W LS L  G        V  A  LPAL QL+ 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLK 59

Query: 204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIV 263
            +DEEV+  A W L  L+ G  D   +V+EAG   +LV LL   +  +   A   + N+ 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 273 IINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA 332
           +I  G +P L++LL  + + ++++ A W +SN++AGN + IQAV++AG +  LV +L+  
Sbjct: 3   VIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 333 EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390
           + ++ K A  A+ N       +    ++  G +  L +LL   +  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373
           +AVI AG +  LV++L  ++ ++++EAA A++N +  G ++ I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLS-AGNNDNIQAVVEAGGLPALVQLLK 59

Query: 374 CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNG 433
             D ++V   L  L N+    E  K              +V E  G  K+  L    N  
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKL-------------IVLEAGGVPKLVNLLDSSNED 106

Query: 434 IREKAVKILETYW 446
           I++ A   L    
Sbjct: 107 IQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 51.3 bits (124), Expect = 5e-09
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 98  TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA 138
              N   V+D G +P  V+LL S  ++V ++A WAL N+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 50.9 bits (123), Expect = 7e-09
 Identities = 21/41 (51%), Positives = 30/41 (73%)

Query: 98  TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA 138
           +  N   VI+ GAVP  V+LL+SP ++V+E+A WAL N+AA
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.6 bits (117), Expect = 5e-08
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 224 TNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIV 263
           + +  Q VIEAG    LV+LL  P   V   A W + N+ 
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.5 bits (109), Expect = 5e-07
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 55 RSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 96
               + V+ AG +P  VE L  ED  ++  EAAWAL+N++S
Sbjct: 1  DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.5 bits (109), Expect = 5e-07
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 224 TNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIV 263
            ++  Q V++AG    LVELL      V+  A W + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 45.5 bits (109), Expect = 6e-07
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 269 QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307
             Q +I  GAVP L+ LL  +  + +++ A W +SN+ A
Sbjct: 4   NKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 81  PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 136
            +++  AA AL  +A G             +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGG-PELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 42.4 bits (101), Expect = 7e-06
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 59 IEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 96
           + VI+AG VP  V+ L   D  ++Q EAAWAL+N+A+
Sbjct: 5  KQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.0 bits (100), Expect = 9e-06
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307
           DD   Q +++ G +P L+ LL    ++ + K A W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 309 NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
           + E  QAVI+AG + PLV +L   + ++++EAA A++N
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSN 38

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 68  VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVRE 127
           +   +E L+ +  P+++  AA AL  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 128 QAVWALGNVAADS 140
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 63/328 (19%), Positives = 106/328 (32%), Gaps = 79/328 (24%)

Query: 48  RILLSIERSPRIEDVIQAGVVP--RFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVV 105
               +++    ++D+I          +  L+ ++   ++  AA AL  + S         
Sbjct: 22  EAAAALQALAELDDLILELAPEAADELLKLLEDEDLLVRLSAAVALGELGSEE------- 74

Query: 106 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAK 165
               AVP+  +LL+     VR+ A  ALG +              EA+ PL+  L     
Sbjct: 75  ----AVPLLRELLSDEDPRVRDAAADALGELGD-----------PEAVPPLVELLENDEN 119

Query: 166 LSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS---- 221
             +   A   L KL           + P L AL           L  A   +   +    
Sbjct: 120 EGVRAAAARALGKL------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL 173

Query: 222 --YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAV 279
              G  + I +         L+ELL      V   A   +G +            N  A 
Sbjct: 174 GELGDPEAIPL---------LIELLEDEDADVRRAAASALGQLGSE---------NVEAA 215

Query: 280 PCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDA-------------------- 319
             L+  L  +    ++K A   +  I  G+ E + A+  A                    
Sbjct: 216 DLLVKAL-SDESLEVRKAALLALGEI--GDEEAVDALAKALEDEDVILALLAAAALGALD 272

Query: 320 --GLIVPLVNVLQDAEFDIKKEAALAIA 345
                +PL+ +L D    ++ EAALA+ 
Sbjct: 273 LAEAALPLLLLLIDEANAVRLEAALALG 300

Length = 335

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.3 bits (93), Expect = 8e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 352 THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390
             E  + +V  G +  L +LL   D ++V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 352 THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390
           + E  + ++  G + PL  LL   D ++       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 194 ALPALAQLIHLDDEEVLSDACWTLSYLS 221
           A+P L QL+   DEEV  +A W LS L+
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 309 NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
           + E  QAV+DAG +  LV +L+  + ++ KEAA A++N
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSN 38

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 125 VREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179
           VRE A  ALG +A   P    L      L+P L  L +     +   A W L ++
Sbjct: 3   VREAAALALGALAGGGP--ELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 194 ALPALAQLIHLDDEEVLSDACWTLSYLSY 222
            LPAL +L+  +DEEV+ +A W LS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 1  DLQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQ 46
                        S   Q  LE LP MV GV SDD   QL AT  
Sbjct: 53 PEDGAEPESELDGSSDADQLSLE-LPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.87
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.87
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.81
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.81
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.8
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.79
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.77
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.75
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.74
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.73
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.73
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.72
PRK09687	280	putative lyase; Provisional	99.7
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.68
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.68
PRK09687	280	putative lyase; Provisional	99.68
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.67
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.67
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.63
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.63
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.62
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.62
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.61
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.57
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.56
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.56
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.54
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.51
PTZ00429	746	beta-adaptin; Provisional	99.51
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.51
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.51
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.48
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.42
PTZ00429	746	beta-adaptin; Provisional	99.4
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.4
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.36
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.34
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.34
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.24
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.24
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.24
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.22
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.2
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.18
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.15
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.15
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.13
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.13
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.12
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.01
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.99
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.95
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.95
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.92
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.9
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.9
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.88
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.88
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.87
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.85
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.84
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.84
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.83
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.81
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.8
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.8
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.79
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.79
PF05536	543	Neurochondrin: Neurochondrin	98.72
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.72
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.68
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.67
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.65
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.64
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.62
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.62
COG5369	743	Uncharacterized conserved protein [Function unknow	98.62
TIGR02270	410	conserved hypothetical protein. Members are found	98.6
COG5369	743	Uncharacterized conserved protein [Function unknow	98.59
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.55
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.53
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.49
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.48
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.48
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.44
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.44
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.43
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.41
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.35
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.35
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.33
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.32
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.32
TIGR02270	410	conserved hypothetical protein. Members are found	98.3
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.28
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.28
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.26
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.25
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.24
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.23
PF05536	543	Neurochondrin: Neurochondrin	98.23
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.22
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.22
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.22
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.2
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.17
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.13
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.12
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.06
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.02
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.02
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.01
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.01
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.98
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.98
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.98
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.95
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.95
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.93
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.9
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.86
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.86
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.82
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.77
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.75
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.75
KOG0567	289	consensus HEAT repeat-containing protein [General	97.71
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.68
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.65
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.59
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.59
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.57
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.53
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.49
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.49
KOG3036	293	consensus Protein involved in cell differentiation	97.47
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.46
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.44
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.42
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.41
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.41
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.4
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.35
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.31
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.3
PF05004	309	IFRD: Interferon-related developmental regulator (	97.23
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.22
PF05004	309	IFRD: Interferon-related developmental regulator (	97.2
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.2
KOG0567	289	consensus HEAT repeat-containing protein [General	97.19
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.16
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.16
PRK14707	2710	hypothetical protein; Provisional	97.15
PRK14707	2710	hypothetical protein; Provisional	97.12
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.12
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.07
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.06
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.05
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.03
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.01
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.9
KOG3036	293	consensus Protein involved in cell differentiation	96.87
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.85
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.84
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.83
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.79
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.79
KOG2025	892	consensus Chromosome condensation complex Condensi	96.78
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.77
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.7
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.7
KOG2956	516	consensus CLIP-associating protein [General functi	96.67
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.65
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.64
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.63
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.57
KOG2956	516	consensus CLIP-associating protein [General functi	96.32
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.31
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.26
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.24
KOG2025	892	consensus Chromosome condensation complex Condensi	96.22
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.18
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.16
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.04
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.99
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.96
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.96
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.89
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.86
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.85
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.74
KOG1243	690	consensus Protein kinase [General function predict	95.68
KOG1243	690	consensus Protein kinase [General function predict	95.64
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.64
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.55
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.54
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.5
KOG2933	334	consensus Uncharacterized conserved protein [Funct	95.47
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.46
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.43
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.38
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.37
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	95.34
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	95.34
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.32
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.32
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.3
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.27
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.27
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.24
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.24
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	95.02
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.92
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.92
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.88
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.82
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.78
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	94.76
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.72
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	94.69
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.63
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	94.57
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	94.57
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.47
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.29
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.28
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.17
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.16
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.16
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	94.12
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.01
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	93.92
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.8
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	93.74
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	93.68
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.68
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	93.66
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.6
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.44
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.41
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.26
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.03
KOG2199	462	consensus Signal transducing adaptor protein STAM/	92.81
KOG2137	700	consensus Protein kinase [Signal transduction mech	92.75
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.56
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	92.5
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	92.43
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	92.36
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.35
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.23
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.2
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	92.1
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	91.92
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.8
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	91.79
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	91.7
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.65
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	91.58
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	91.58
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.43
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	91.4
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	91.26
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	91.25
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	91.2
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.96
cd03561	133	VHS VHS domain family; The VHS domain is present i	90.94
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	90.84
KOG0413	1529	consensus Uncharacterized conserved protein relate	90.68
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	90.0
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	89.86
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.47
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	88.91
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	88.47
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	88.3
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	88.13
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	87.26
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	87.02
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	86.98
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	86.8
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	86.77
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	86.61
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	86.6
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	86.2
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	86.16
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.48
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.07
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	83.89
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	83.88
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	83.58
PF04499	475	SAPS: SIT4 phosphatase-associated protein; InterPr	83.4
PF09758	149	FPL: Uncharacterised conserved protein; InterPro:	82.69
KOG2005	878	consensus 26S proteasome regulatory complex, subun	82.52
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	82.38
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	82.33
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	81.79
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	81.43
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	81.36
KOG2199	462	consensus Signal transducing adaptor protein STAM/	80.86
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	80.65
KOG2038	988	consensus CAATT-binding transcription factor/60S r	80.22

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-62  Score=440.28  Aligned_cols=425  Identities=65%  Similarity=0.990  Sum_probs=403.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      .+..++.+.|+++..+..+...++++.+.+..++...++..|++|.|++.+...+.+.++..|+|+|.|++.++++....
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            78889999999999999999999999999878889999999999999999987666999999999999999999999999


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC-
Q 043950          105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-  183 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-  183 (458)
                      +++.|.+|.++.++.+++..++++|+|+|+|++.+++.+|+.+++.|++++|+.++..+....+.+++.|+|+|||++. 
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999965555579999999999999998 


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhh
Q 043950          184 PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIV  263 (458)
Q Consensus       184 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~  263 (458)
                      |.+....+..++|.|..++++.|+++...++|++++++.++++.++.+++.|+++.|+.+|.+.+..++..|+++++|++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHH
Q 043950          264 MGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALA  343 (458)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~  343 (458)
                      .+++.+++.+++.|+++.|..++...+...+|++|+|+++|++.|++++++.+++.|++|.|++++++.+.++|++|+|+
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa  387 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA  387 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999965477899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHH
Q 043950          344 IANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKI  423 (458)
Q Consensus       344 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  423 (458)
                      ++|++.++++++..++++.|+++.++++|.-+|.++...++.++.++++.++.....    +. +++...++++||++++
T Consensus       388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~----~~-n~~~~~IEe~ggldki  462 (514)
T KOG0166|consen  388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNR----GT-NPLAIMIEEAGGLDKI  462 (514)
T ss_pred             HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccc----cc-cHHHHHHHHccChhHH
Confidence            999999999999999999999999999999999999999999999999999987532    11 7899999999999999


Q ss_pred             HhhhcCCChHHHHHHHHHHHHhcCCCCCCCC
Q 043950          424 EGLKSHDNNGIREKAVKILETYWCGRVVGPQ  454 (458)
Q Consensus       424 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~  454 (458)
                      ..|++|++.++++.|..++++||..|++++.
T Consensus       463 E~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~  493 (514)
T KOG0166|consen  463 ENLQSHENEEIYKKAYKIIDTYFSEEDDEDD  493 (514)
T ss_pred             HHhhccccHHHHHHHHHHHHHhcCCCccccc
Confidence            9999999999999999999999999866553

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.8e-60  Score=396.12  Aligned_cols=426  Identities=56%  Similarity=0.851  Sum_probs=397.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      .-+|.+.+.|.|+|.+.++.|..-++++++.+..++++.++++|++|.+++++........+.+|+|+|.|++++.....
T Consensus        71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT  150 (526)
T COG5064          71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT  150 (526)
T ss_pred             hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence            45799999999999999999999999999999889999999999999999999655436789999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc-cHHHHHHHHHHHHHhhc
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA-KLSMLRIATWTLSKLCK  181 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~l~~l~~  181 (458)
                      ..+++.|.+|.++++|.+++.+++++++|+|+|++.+++.+|+.+.+.|++++++.++..+. +..+.+.+.|+|+|||+
T Consensus       151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR  230 (526)
T COG5064         151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR  230 (526)
T ss_pred             EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999996443 35899999999999999


Q ss_pred             CC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          182 GK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       182 ~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                      .. |.+....+...+|.|.+++.+.|+++...++|++++++..+.+.++.+++.|+.+.|+++|.+++..++..|++.++
T Consensus       231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG  310 (526)
T COG5064         231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG  310 (526)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence            88 77777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHH
Q 043950          261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEA  340 (458)
Q Consensus       261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a  340 (458)
                      |+..+++.+.+.+++.|+++.+..+|+++ ...+|++|||+++|+..++.++++.+++.+++|+|+++|+..+..++++|
T Consensus       311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA  389 (526)
T COG5064         311 NIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA  389 (526)
T ss_pred             CeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcc
Q 043950          341 ALAIANATVRG--THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE  418 (458)
Q Consensus       341 ~~~L~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (458)
                      +|++.|.+.++  .++.++++++.|+++.|+++|.-.+..+.+.+++++.++++.++.......  ...|.|...+++.|
T Consensus       390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Ag  467 (526)
T COG5064         390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAG  467 (526)
T ss_pred             HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhcc
Confidence            99999999875  568899999999999999999999988999999999999998887654421  13566888898999


Q ss_pred             hHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950          419 GFKKIEGLKSHDNNGIREKAVKILETYWCGRVV  451 (458)
Q Consensus       419 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  451 (458)
                      |++.+..++++.|.+++.+|-.++++||.+|+.
T Consensus       468 gmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~  500 (526)
T COG5064         468 GMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA  500 (526)
T ss_pred             cHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence            999999999999999999999999999987754

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.5e-49  Score=352.30  Aligned_cols=390  Identities=25%  Similarity=0.402  Sum_probs=346.8

Q ss_pred             ccccCCCCCCCCChhhHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHH
Q 043950            4 SQRFLPSAPRPSLNLQTKLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ   82 (458)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~   82 (458)
                      ||+++++...||-......|.+|.+|+.|.. +++.+|++|+|+|.+++++. ++..+.+++.|.+|.|++++.+++ .+
T Consensus        90 ~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~  167 (514)
T KOG0166|consen   90 FRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-AD  167 (514)
T ss_pred             HHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HH
Confidence            5566666666666666777999999999985 55999999999999999987 788899999999999999999999 89


Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc
Q 043950           83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN  161 (458)
Q Consensus        83 i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~  161 (458)
                      ++++|+|+|+|++.+++.+|+.+++.|+++.|+.++..... ...++++|+|+|+|++.......-.-..+++.|..++ 
T Consensus       168 v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-  246 (514)
T KOG0166|consen  168 VREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-  246 (514)
T ss_pred             HHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999999999999999988665 7888999999999977622222222345788888888 


Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHH
Q 043950          162 EHAKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRL  240 (458)
Q Consensus       162 ~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L  240 (458)
                      ++.|+++...++|++++|+.+.+.. ......|++|.++.+|.+.+..++..++++++|++.+++.+.+.+++.|+++.|
T Consensus       247 ~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l  326 (514)
T KOG0166|consen  247 HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVL  326 (514)
T ss_pred             hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHH
Confidence            8999999999999999999887444 444458999999999999999999999999999999999999999999999999


Q ss_pred             HHHhC-CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHH
Q 043950          241 VELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVID  318 (458)
Q Consensus       241 ~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~  318 (458)
                      ..++. ++...+++.|+|+++|++.++.++++.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++
T Consensus       327 ~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~  405 (514)
T KOG0166|consen  327 SNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVE  405 (514)
T ss_pred             HHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence            99999 56677999999999999999999999999999999999999999 99999999999999997 78999999999


Q ss_pred             cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC-------HHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950          319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT-------HEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL  391 (458)
Q Consensus       319 ~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~  391 (458)
                      .|++++++++|.-.|.++...++.++.++...+.       ......+-+.|+++.+..+-.+++.++...|...+.++|
T Consensus       406 ~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf  485 (514)
T KOG0166|consen  406 QGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYF  485 (514)
T ss_pred             cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhc
Confidence            9999999999998999999999999999987542       234566778999999999999999999999999999999


Q ss_pred             Hhchhh
Q 043950          392 KVGEAE  397 (458)
Q Consensus       392 ~~~~~~  397 (458)
                      ..++..
T Consensus       486 ~~e~~~  491 (514)
T KOG0166|consen  486 SEEDDE  491 (514)
T ss_pred             CCCccc
Confidence            876443

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.2e-48  Score=323.10  Aligned_cols=388  Identities=25%  Similarity=0.365  Sum_probs=341.8

Q ss_pred             cccccCCCCCCCCChhhHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCH
Q 043950            3 QSQRFLPSAPRPSLNLQTKLEILPAMVAGV-WSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYP   81 (458)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~   81 (458)
                      .||+.|+.+..||-......|.+|++++++ ..+..-.+++|+|+|.+++++. ....+.+++.|.+|.++++|.+++ .
T Consensus        94 kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~  171 (526)
T COG5064          94 KFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-D  171 (526)
T ss_pred             HHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-H
Confidence            477788888888877888899999999999 4667778999999999999987 677888899999999999999999 8


Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHH
Q 043950           82 QLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQ  159 (458)
Q Consensus        82 ~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~  159 (458)
                      +++++++|+|+|++.+++.+|+.+.+.|++..++.++.+..  ..+.+++.|+|+|+|++.....+.-.-...++.|.++
T Consensus       172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KL  251 (526)
T COG5064         172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKL  251 (526)
T ss_pred             HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998754  4788999999999997652211211112357777777


Q ss_pred             hcccccHHHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHH
Q 043950          160 LNEHAKLSMLRIATWTLSKLCKGKPQPPF-DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR  238 (458)
Q Consensus       160 l~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~  238 (458)
                      + .+.|+++...|+|++++|+........ ....|+.+.|+++|.+++..++..+++.++|+...++.+.+.+++.|+++
T Consensus       252 i-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~  330 (526)
T COG5064         252 I-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK  330 (526)
T ss_pred             H-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHH
Confidence            7 899999999999999999988643333 33378888899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC---CHHHHHH
Q 043950          239 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG---NREQIQA  315 (458)
Q Consensus       239 ~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~  315 (458)
                      .+..+|.++...+|+.|||+++|+..++.++.+.+++.+++|+|+.+|.+. +..++++|||+++|..++   -|+.+.+
T Consensus       331 a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iry  409 (526)
T COG5064         331 AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRY  409 (526)
T ss_pred             HHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHH
Confidence            999999999999999999999999999999999999999999999999999 999999999999999873   5788999


Q ss_pred             HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCCHHHHHHHHH
Q 043950          316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH----------EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE  385 (458)
Q Consensus       316 l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~  385 (458)
                      +++.|++.+|+++|...+.++.+-++.++.|+...+..          .+..++.+.|+++.+..+.++.+..+..++..
T Consensus       410 Lv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYs  489 (526)
T COG5064         410 LVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYS  489 (526)
T ss_pred             HHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHH
Confidence            99999999999999999998999999999999886632          34455566899999999999999999999999


Q ss_pred             HHHHHHHhc
Q 043950          386 GLENILKVG  394 (458)
Q Consensus       386 ~l~~l~~~~  394 (458)
                      ++..+|..+
T Consensus       490 IIe~fFgee  498 (526)
T COG5064         490 IIEKFFGEE  498 (526)
T ss_pred             HHHHHcccc
Confidence            999998543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=5.2e-40  Score=338.21  Aligned_cols=411  Identities=21%  Similarity=0.213  Sum_probs=344.1

Q ss_pred             hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950           19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT   98 (458)
Q Consensus        19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~   98 (458)
                      ....|.+|.++++|+++++..|..|+++|.+++... .+....+++.|++|.|++++.+++++.+|+.|+|+|++++.++
T Consensus       185 IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s  263 (2102)
T PLN03200        185 TLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS  263 (2102)
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC
Confidence            456799999999999999999999999998887764 5678889999999999999987654799999999999999999


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhcCCCc-----------hhhH---HhhhCCHHH
Q 043950           99 SMNTNVVIDHGAVPIFVKLLASPS---------DDVREQAVWALGNVAADSPG-----------CRNL---VLREEALIP  155 (458)
Q Consensus        99 ~~~~~~~~~~~~i~~L~~ll~~~~---------~~~~~~a~~~L~~l~~~~~~-----------~~~~---~~~~~~l~~  155 (458)
                      +++++.+++.|+++.|++++.+++         ..++++++|+|+|+|.+.+.           .++.   ....|++.+
T Consensus       264 ~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALay  343 (2102)
T PLN03200        264 KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAY  343 (2102)
T ss_pred             HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHH
Confidence            999999999999999999998654         34699999999999986433           1111   133477777


Q ss_pred             HHHHhcccccHHHH----HHHHHHHHHhhcCC-CCCChhh-------------------hhhhHHHHHHhhcCCChHHHH
Q 043950          156 LLAQLNEHAKLSML----RIATWTLSKLCKGK-PQPPFDQ-------------------VRPALPALAQLIHLDDEEVLS  211 (458)
Q Consensus       156 l~~~l~~~~~~~~~----~~a~~~l~~l~~~~-~~~~~~~-------------------~~~~l~~l~~ll~~~~~~~~~  211 (458)
                      ++..+ +.++...+    ..++|+|.+|+++. +......                   ..++++.|+.++...+.+++.
T Consensus       344 ll~l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~  422 (2102)
T PLN03200        344 ALMVF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQE  422 (2102)
T ss_pred             HHHhc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHH
Confidence            87777 33333333    25679999999876 3221211                   134567788888889999999


Q ss_pred             HHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCCh
Q 043950          212 DACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHK  291 (458)
Q Consensus       212 ~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~  291 (458)
                      .++++|++++.++.+..+.+.+.|+++.|+++|.+++..++..|++++++++.++++.+..+++.|++|.|+++|.++ +
T Consensus       423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~  501 (2102)
T PLN03200        423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-S  501 (2102)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-C
Confidence            999999999998888899999999999999999999999999999999999998988889999999999999999998 9


Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 043950          292 KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL  371 (458)
Q Consensus       292 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l  371 (458)
                      .+++++|+|+|+|++.++++....+.+.|+++.|+++|.+++.++++.|+++|.+++..++.+.         ++.++.+
T Consensus       502 ~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~L  572 (2102)
T PLN03200        502 QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTAL  572 (2102)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHH
Confidence            9999999999999998754444444478999999999999999999999999999998766553         3667888


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950          372 LLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVV  451 (458)
Q Consensus       372 l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  451 (458)
                      +.++++.++..++.++.+++...+....          ........||++.|.+|+.++++++++.|.++|.+||.+...
T Consensus       573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~----------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d  642 (2102)
T PLN03200        573 LLGDLPESKVHVLDVLGHVLSVASLEDL----------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD  642 (2102)
T ss_pred             hcCCChhHHHHHHHHHHHHHhhcchhHH----------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence            9999999999999999999876554320          122234679999999999999999999999999999986643

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.6e-38  Score=327.37  Aligned_cols=418  Identities=19%  Similarity=0.183  Sum_probs=369.7

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950           21 KLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM  100 (458)
Q Consensus        21 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  100 (458)
                      ..++++.|+.+++..+.++|..++++|..++.++ .+.++.+.+.|++|.|+++|.+++ +.+|..|++.+++++.++++
T Consensus       402 ~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~nde  479 (2102)
T PLN03200        402 HAEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDE  479 (2102)
T ss_pred             hccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHH
Confidence            3467889999999999999999999999997765 788999999999999999999988 89999999999999998889


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      .+..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+.+.|++++|+..+ .+.++..++.++|+|.+++
T Consensus       480 nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi  558 (2102)
T PLN03200        480 SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLV  558 (2102)
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998777888887889999999999 6678899999999999996


Q ss_pred             cCCCCC---------------------------------C---h--hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 043950          181 KGKPQP---------------------------------P---F--DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY  222 (458)
Q Consensus       181 ~~~~~~---------------------------------~---~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~  222 (458)
                      ......                                 .   .  ....++++.|..+++++++.+++.++|+|.+++.
T Consensus       559 ~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a  638 (2102)
T PLN03200        559 RTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS  638 (2102)
T ss_pred             hccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            432110                                 0   0  0124789999999999999999999999999999


Q ss_pred             CChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHH
Q 043950          223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT  301 (458)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~  301 (458)
                      ...+..+.++..|+++.++.+|.+.+.+++..++|+|++++.... .+...+++.|++++|+++|+++ +.+++..|+.+
T Consensus       639 ~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~A  717 (2102)
T PLN03200        639 SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCA  717 (2102)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHH
Confidence            888888889999999999999999999999999999999997544 4456678999999999999998 99999999999


Q ss_pred             HHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHH--HHHHHHCCChHHHHhhccCCCHHH
Q 043950          302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQ--IKYLVREGCIKPLCDLLLCVDPKI  379 (458)
Q Consensus       302 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~v  379 (458)
                      |.|++.+. +....+.+.|+++.|++++.+++++.|++|+++|.+++...+.+.  ...+...|.+..|+++|+..|.+.
T Consensus       718 LanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~  796 (2102)
T PLN03200        718 LANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDS  796 (2102)
T ss_pred             HHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcch
Confidence            99999865 566777788999999999999999999999999999998876544  366678999999999999988876


Q ss_pred             HHH--HHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCC
Q 043950          380 VTV--CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGR  449 (458)
Q Consensus       380 ~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  449 (458)
                      ...  ++++|..+.+..+...+      ..+++...++..++++.|.....+.+|.++++|..+|+++..+.
T Consensus       797 ~~~~~al~~l~~l~~~~~~~~~------~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        797 SATSEALEALALLARTKGGANF------SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             hhHHHHHHHHHHHHhhcccCCC------CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            665  89999999986665543      35678999999999999988889999999999999999998764

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-32  Score=229.65  Aligned_cols=405  Identities=20%  Similarity=0.211  Sum_probs=340.5

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +...++.-++++.++.+|..|..++.+++-.  .++.-.++..+++..|+.-+..+. .++|..++.|+.|++.. .+++
T Consensus        85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk  160 (550)
T KOG4224|consen   85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNK  160 (550)
T ss_pred             hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccch
Confidence            3467777888999999999999999999876  455555667777777776666666 59999999999999994 8899


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      ..+...|++.++.++-++.+..++.++..+|.|++... +.|+.++..|+++.++..+ .+.++.++..++.+++++.-.
T Consensus       161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd  238 (550)
T KOG4224|consen  161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD  238 (550)
T ss_pred             hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence            99999999999999888999999999999999997655 4577888999999999999 899999999999999999877


Q ss_pred             CCCCChhhh--hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          183 KPQPPFDQV--RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       183 ~~~~~~~~~--~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                      ...+.....  ..++|.++.++.++++.++..+..++++++.... +...++++|.+|.++++++++..........|+.
T Consensus       239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr  317 (550)
T KOG4224|consen  239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIR  317 (550)
T ss_pred             HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence            544443333  4499999999999999999999999999996555 5566999999999999999988888888899999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHH
Q 043950          261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEA  340 (458)
Q Consensus       261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a  340 (458)
                      |++- ++-....+.+.|++.+|+.+|..+.+.+++-.|..+|.|++..+..+...+.+.|.+|.+..++-+....++.+.
T Consensus       318 nisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei  396 (550)
T KOG4224|consen  318 NISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI  396 (550)
T ss_pred             hccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence            9975 444556677999999999999998566799999999999999888889999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHh----
Q 043950          341 ALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE----  416 (458)
Q Consensus       341 ~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----  416 (458)
                      ..++..++..  ......+.+.|.++.|+.+..+.+.+++-++..+|.++....+.             |...++.    
T Consensus       397 sac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-------------YarviEawd~P  461 (550)
T KOG4224|consen  397 SACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-------------YARVIEAWDHP  461 (550)
T ss_pred             HHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH-------------HHHHHHHhcCc
Confidence            9999999884  35678889999999999999999999999999999999876554             3333322    


Q ss_pred             -cchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCC
Q 043950          417 -DEGFKKIEGLKSHDNNGIREKAVKILETYWCGRV  450 (458)
Q Consensus       417 -~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  450 (458)
                       .|.-..|..+..+..-.++..+.|.|..+.++-+
T Consensus       462 ~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  462 VQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence             2334456666677777777778887777765543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-30  Score=217.88  Aligned_cols=366  Identities=19%  Similarity=0.260  Sum_probs=316.1

Q ss_pred             HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950           20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ..++++..|+.-+.++...+|..++.++.+++..  +.+...+...|++..+.++-++.+ ..+|..+..+|.++.. +.
T Consensus       123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~  198 (550)
T KOG4224|consen  123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SR  198 (550)
T ss_pred             EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hh
Confidence            3456677788777888899999999999999988  577788899999999999877777 7999999999999998 79


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhC--CHHHHHHHhcccccHHHHHHHHHHHH
Q 043950          100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREE--ALIPLLAQLNEHAKLSMLRIATWTLS  177 (458)
Q Consensus       100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~a~~~l~  177 (458)
                      ++|+.++..|++|.|+.+++++++.++..|+.+++|++.+.. .|..+.+.+  .++.++.++ +++++.++-.+.-+|.
T Consensus       199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALr  276 (550)
T KOG4224|consen  199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALR  276 (550)
T ss_pred             hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHh
Confidence            999999999999999999999999999999999999987753 467777777  899999999 8888999999999999


Q ss_pred             HhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHH
Q 043950          178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPAL  256 (458)
Q Consensus       178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~  256 (458)
                      +++............+.+|.++++++++..........|+.|++-++- +...+.+.|++..|+++|... +++++-.|.
T Consensus       277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAv  355 (550)
T KOG4224|consen  277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAV  355 (550)
T ss_pred             hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHH
Confidence            999886555555568999999999999988888899999999996654 445588999999999999986 455999999


Q ss_pred             HHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhh
Q 043950          257 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDI  336 (458)
Q Consensus       257 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~  336 (458)
                      .+|.||+..+......++++|.++.+..++.+. ...++.+...+++.++... .....+.+.|+++.|+.++.+.+.++
T Consensus       356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev  433 (550)
T KOG4224|consen  356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEV  433 (550)
T ss_pred             HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhh
Confidence            999999998888889999999999999999998 8889999999999998643 56678899999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHH------CCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950          337 KKEAALAIANATVRGTHEQIKYLVR------EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       337 ~~~a~~~L~~l~~~~~~~~~~~l~~------~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      +.+|+.+|.|++..  .+....+.+      .|.-..|.+.+.+.+..++..+.|.+..++.....
T Consensus       434 ~gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~  497 (550)
T KOG4224|consen  434 RGNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL  497 (550)
T ss_pred             cccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999874  344444444      35556778888888888888899999988876443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=5.3e-26  Score=217.34  Aligned_cols=388  Identities=17%  Similarity=0.178  Sum_probs=319.2

Q ss_pred             hhhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950           17 NLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS   96 (458)
Q Consensus        17 ~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~   96 (458)
                      .-+.+-+.++.|++.|.+++.++...++.+|.+++..  .++...+.+.|+++.|.+++++++ .+++..++++|.|++.
T Consensus       284 ~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf  360 (708)
T PF05804_consen  284 LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF  360 (708)
T ss_pred             HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc
Confidence            3566778999999999999999999999999999766  678999999999999999999998 8999999999999999


Q ss_pred             CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHH
Q 043950           97 GTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTL  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l  176 (458)
                       +++.|..++..|++|.|+.++.++  ..+..++.+|.+++.++ ..+..+...++++.++..+..++++.+...+++.+
T Consensus       361 -d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~  436 (708)
T PF05804_consen  361 -DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALL  436 (708)
T ss_pred             -CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHH
Confidence             689999999999999999999754  45677999999998865 46788888899999999987777777888889999


Q ss_pred             HHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-Cccchhh
Q 043950          177 SKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTP  254 (458)
Q Consensus       177 ~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~  254 (458)
                      .|++.+..+.......++++.++.... ..|+    ..+..+.|++.+++.....+.  +.+..|+.++..+ +++....
T Consensus       437 iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE  510 (708)
T PF05804_consen  437 INLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVE  510 (708)
T ss_pred             HHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHH
Confidence            999998755554444677888776554 3443    245789999988754444343  4677888888774 6778889


Q ss_pred             HHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-
Q 043950          255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-  332 (458)
Q Consensus       255 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-  332 (458)
                      ++++|+|+...+......+.+.+++|.+.+.|..+. ++++.-+++..++.++. .+.....+.+.|+++.|+.++... 
T Consensus       511 ~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kq  589 (708)
T PF05804_consen  511 CLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQ  589 (708)
T ss_pred             HHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhC
Confidence            999999998776667666668899999999997652 45788899999998885 457778888999999999999754 


Q ss_pred             -ChhhHHHHHHHHHHhhcCCCHHHHHHH-HHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHH
Q 043950          333 -EFDIKKEAALAIANATVRGTHEQIKYL-VREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQY  410 (458)
Q Consensus       333 -~~~~~~~a~~~L~~l~~~~~~~~~~~l-~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  410 (458)
                       |.++..+.++++..+..+.  +.+..+ .+.++...|+++++++|+.+++.|-.+|.-+.+.++++...      .+.-
T Consensus       590 eDdE~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~r------i~~~  661 (708)
T PF05804_consen  590 EDDEIVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAER------IRRE  661 (708)
T ss_pred             chHHHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHH------hhHH
Confidence             7899999999999999863  444555 45889999999999999999999999999999999988654      2223


Q ss_pred             HHHHHhcchHHHHHhh
Q 043950          411 ARLVEEDEGFKKIEGL  426 (458)
Q Consensus       411 ~~~~~~~~~~~~l~~l  426 (458)
                      +....+..+++.+..-
T Consensus       662 kF~~hN~~WLe~v~~~  677 (708)
T PF05804_consen  662 KFRWHNAQWLEMVESQ  677 (708)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            4445577788888643

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=5.1e-25  Score=210.64  Aligned_cols=391  Identities=19%  Similarity=0.167  Sum_probs=319.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950           26 PAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVV  105 (458)
Q Consensus        26 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  105 (458)
                      +++-.+++.. ..+...+...|.|++.+  ......+.+.|+++.|+++|++++ .++...++.+|.+++. ..+++..+
T Consensus       253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m  327 (708)
T PF05804_consen  253 KKLQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM  327 (708)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            3444444443 44555788899999876  677888999999999999999998 8999999999999999 68899999


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC
Q 043950          106 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ  185 (458)
Q Consensus       106 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  185 (458)
                      .+.|+++.|.+++.+++..++..++++|.|++.+. ..|..+++.|.+|.++.++.+   +..+..++.+|+++|.....
T Consensus       328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~  403 (708)
T PF05804_consen  328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA  403 (708)
T ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence            99999999999999999999999999999997765 558889999999999999943   34567789999999998766


Q ss_pred             CChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950          186 PPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM  264 (458)
Q Consensus       186 ~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~  264 (458)
                      .......+++|.++.++. .+++.+...++..+.|++... .+.+.+.+.++++.|++...+...   ...+.++.|++.
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~  479 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ  479 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence            666666889999988765 456777778889999998555 466778888899999988765433   234568889988


Q ss_pred             CChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHH
Q 043950          265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAAL  342 (458)
Q Consensus       265 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~  342 (458)
                      +.+.....+.  +.+..++..+..+.+.+...++..+|+|+...+....+.+-+.+++|.+.+.|..+  ++++..+++.
T Consensus       480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            7654434333  57888888888876889999999999999876545555555789999999999765  5679999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH
Q 043950          343 AIANATVRGTHEQIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF  420 (458)
Q Consensus       343 ~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (458)
                      .++.++.  ++..+..+.+.|.++.|++++..  +|++++.+.+.++++++...+..             ...+.+.++.
T Consensus       558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~~~~~  622 (708)
T PF05804_consen  558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKETEIP  622 (708)
T ss_pred             HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhccchH
Confidence            9999986  66788888999999999999974  56789999999999999876643             4566778999


Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          421 KKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       421 ~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      ..+.+++++.|++|++.|...++-.-
T Consensus       623 ~ylidL~~d~N~~ir~~~d~~Ldii~  648 (708)
T PF05804_consen  623 AYLIDLMHDKNAEIRKVCDNALDIIA  648 (708)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988887776543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.87  E-value=1.6e-20  Score=175.68  Aligned_cols=399  Identities=22%  Similarity=0.248  Sum_probs=290.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh--h
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM--N  101 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~--~  101 (458)
                      .+|..+.+|.+.++.+|-.|+..+..++.++ ......+.+.|+|+.|+.++.+.+ ++++.+|+++|.|+..++..  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence            4789999999999999999999999886654 666778889999999999999999 89999999999999997766  7


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc---------c----cHH
Q 043950          102 TNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH---------A----KLS  167 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~---------~----~~~  167 (458)
                      +-.+.+.++++.+++++.. .+.++++.+..+|+||+..+ .++..++ ...+..|.......         +    +.+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccce
Confidence            8888899999999999986 88999999999999998774 3333332 34566666555311         1    367


Q ss_pred             HHHHHHHHHHHhhcCCCC--CChhhhhhhHHHHHHhhc------CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHH
Q 043950          168 MLRIATWTLSKLCKGKPQ--PPFDQVRPALPALAQLIH------LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRR  239 (458)
Q Consensus       168 ~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~l~~ll~------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~  239 (458)
                      +..++..+|.|++.....  ..+....|++..|+..++      ..|....+.+...+.|++..-...        +-+.
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~E--------vp~~  461 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAE--------VPPK  461 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhh--------cCHh
Confidence            889999999999986522  223334888998888887      356788899999999998432211        1111


Q ss_pred             HHHHhCCCC--ccc--hhhHHHHHhHhhcC---------------ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHH
Q 043950          240 LVELLGHPS--PSV--LTPALWTVGNIVMG---------------DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACW  300 (458)
Q Consensus       240 L~~ll~~~~--~~~--~~~a~~~l~~l~~~---------------~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~  300 (458)
                      ....+...+  ...  ......+++.-...               .+.....++...++...+.++....++.+.+.++.
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaG  541 (717)
T KOG1048|consen  462 YRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAG  541 (717)
T ss_pred             hhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhh
Confidence            111111100  000  00222222222221               11112223344566776666765547889999999


Q ss_pred             HHHHhhcCCHHH---H-HHH-HHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 043950          301 TISNITAGNREQ---I-QAV-IDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV  375 (458)
Q Consensus       301 ~l~nl~~~~~~~---~-~~l-~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~  375 (458)
                      +|-|++.+....   + ..+ .+..+++.+++++..++..+...++.+|.|+..+.  . .+.++..++++.|++.|...
T Consensus       542 aLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--r-nk~ligk~a~~~lv~~Lp~~  618 (717)
T KOG1048|consen  542 ALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--R-NKELIGKYAIPDLVRCLPGS  618 (717)
T ss_pred             hHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--h-hhhhhhcchHHHHHHhCcCC
Confidence            999999753222   2 223 46789999999999999999999999999999853  3 34456689999999999743


Q ss_pred             ------CHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC-CChHHHHHHHHHHHHhcCC
Q 043950          376 ------DPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH-DNNGIREKAVKILETYWCG  448 (458)
Q Consensus       376 ------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~  448 (458)
                            ++++...++..|.+++......             +..+.+.+++++|..+..+ .++++.+.|..++..+|..
T Consensus       619 ~~~~~~sedtv~~vc~tl~niv~~~~~n-------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y  685 (717)
T KOG1048|consen  619 GPSTSLSEDTVRAVCHTLNNIVRKNVLN-------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY  685 (717)
T ss_pred             CCCcCchHHHHHHHHHhHHHHHHHhHHH-------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence                  3578888899999998654443             5666699999999999544 5679999999999999876


Q ss_pred             CC
Q 043950          449 RV  450 (458)
Q Consensus       449 ~~  450 (458)
                      .|
T Consensus       686 ~e  687 (717)
T KOG1048|consen  686 KE  687 (717)
T ss_pred             HH
Confidence            54

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=3.2e-19  Score=166.51  Aligned_cols=390  Identities=20%  Similarity=0.260  Sum_probs=309.9

Q ss_pred             cHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           24 ILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        24 ~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      -+..|++.|+.. |+..|+.|+.-|+.+++..+++...-+--.-++|.|+.+|+++.+.++...|+++|.+++.--|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            367788888865 9999999999999998876555555444556899999999998889999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          103 NVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                      ..+++.+.||.|+.-|.. ...++.++++.+|..|++.++.   .+.+.|++...+.++ +--+...++.|+.+..|+|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999999999986655 7899999999999999988765   477899999999999 66778899999999999999


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc---CChhhHHHHHHhCcHHHHHHHhCCCC----ccchhh
Q 043950          182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY---GTNDKIQVVIEAGVCRRLVELLGHPS----PSVLTP  254 (458)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~  254 (458)
                      .-+...+..+...+|.|..+|...|....+.++.|+..++.   +.++..+.+...|++.....++.-..    ..+.-.
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            98888888999999999999999999999999999999984   35566777888999999999987653    234455


Q ss_pred             HHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-------------hhhHHHHHHHHHH------------------
Q 043950          255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-------------KKSIKKVACWTIS------------------  303 (458)
Q Consensus       255 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-------------~~~v~~~a~~~l~------------------  303 (458)
                      .++.+..++++++.....+.+.++...+..+|....             .+.-..+....+.                  
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~  483 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL  483 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence            677788888887877777777777777777664320             0000000000000                  


Q ss_pred             ------------------------------Hhh--------------------------cCCHHHHHHHHHcCChHHHHH
Q 043950          304 ------------------------------NIT--------------------------AGNREQIQAVIDAGLIVPLVN  327 (458)
Q Consensus       304 ------------------------------nl~--------------------------~~~~~~~~~l~~~~~~~~L~~  327 (458)
                                                    .+.                          ...++..+.+.+ .++|.|++
T Consensus       484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve  562 (1051)
T KOG0168|consen  484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE  562 (1051)
T ss_pred             hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence                                          000                          011122222222 47899999


Q ss_pred             HhccC-ChhhHHHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCC
Q 043950          328 VLQDA-EFDIKKEAALAIANATVRGTHEQIKYLV-REGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIG  405 (458)
Q Consensus       328 ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~  405 (458)
                      ++.+. ++.||..++.+|..++...+.+.+..++ +..+-..+-.++.+++..|...++.....+++..++.        
T Consensus       563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~--------  634 (1051)
T KOG0168|consen  563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT--------  634 (1051)
T ss_pred             HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH--------
Confidence            98765 8999999999999999888877777665 4567778888999999999999999999999876654        


Q ss_pred             chhHHHHHHHhcchHHHHHhhhcCC
Q 043950          406 DVNQYARLVEEDEGFKKIEGLKSHD  430 (458)
Q Consensus       406 ~~~~~~~~~~~~~~~~~l~~l~~~~  430 (458)
                          |...|.+.|.+..+.+|....
T Consensus       635 ----F~~~F~REGV~~~v~~L~~~~  655 (1051)
T KOG0168|consen  635 ----FSPSFRREGVFHAVKQLSVDS  655 (1051)
T ss_pred             ----hhhhHhhhhHHHHHHHHhccC
Confidence                788899999999999997633

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.81  E-value=3e-16  Score=149.34  Aligned_cols=369  Identities=17%  Similarity=0.169  Sum_probs=279.3

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh
Q 043950           69 PRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL  148 (458)
Q Consensus        69 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  148 (458)
                      +.++..+++.+ .+....++.+|..+... ......  ..+..+.|...|.++++.+|..+++.+.++..++......+.
T Consensus        41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~-~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSN-REQVELICDILKRLLSA-LSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcC-hHHHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            34778888877 67778888999988873 222222  346689999999999999999999999999988777677788


Q ss_pred             hhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhH
Q 043950          149 REEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKI  228 (458)
Q Consensus       149 ~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  228 (458)
                      +.+.++.++..+ .+++..+...|+.+|..++...+........+.++.+..++..++..++..++.++.+++..+++..
T Consensus       117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            889999999999 8889999999999999999876444333346668889999998888999999999999999999999


Q ss_pred             HHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhh-----HHHHHHHHHH
Q 043950          229 QVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKS-----IKKVACWTIS  303 (458)
Q Consensus       229 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----v~~~a~~~l~  303 (458)
                      +.+.+.|+++.++..+++++.-++.+++.++..++. .+...+.+.+.|+++.+..++.+.....     .-.......+
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            989999999999999999888899999999999998 6777888999999999999997652222     1123346677


Q ss_pred             HhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHH-HHC-----CChHHHHhhccCCCH
Q 043950          304 NITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYL-VRE-----GCIKPLCDLLLCVDP  377 (458)
Q Consensus       304 nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l-~~~-----~~l~~L~~ll~~~~~  377 (458)
                      +++...+..+.... ..++..+.+++.+.|...+..|+.+++.++.  +.+....+ ...     .++..+.....+...
T Consensus       275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            77764444332222 2366677788888999999999999999986  45665555 332     245566666667788


Q ss_pred             HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          378 KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       378 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      +++.+++.++.+++...+..... .-......+...+.+......+..+.+.|-++++-.+..++...+.
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~-~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDN-DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            99999999999998766542110 0000111122222222222267788889999999999998887754

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.81  E-value=6.3e-16  Score=147.20  Aligned_cols=396  Identities=16%  Similarity=0.148  Sum_probs=294.9

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950           27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI  106 (458)
Q Consensus        27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  106 (458)
                      .+..++++.+.+....++..|.++....  .. ..+ ..+..+.|...|.+++ +.+|..+++.+++++.++......+.
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~-~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSAL--SP-DSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhcc--CH-HHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            3677788877777788888899887753  22 222 4567899999999999 89999999999999998777778888


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC
Q 043950          107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP  186 (458)
Q Consensus       107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~  186 (458)
                      +.++++.++..+.+++..+...|+.+|.+++...+.. +.+...+.+..|...+ ...+..++..+..++.+++...+..
T Consensus       117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence            8999999999999999999999999999999876655 4456767788888888 5556678888999999998876433


Q ss_pred             Ch-hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccc-----h-hhHHHHH
Q 043950          187 PF-DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSV-----L-TPALWTV  259 (458)
Q Consensus       187 ~~-~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~-----~-~~a~~~l  259 (458)
                      .. ....|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.+.+-     . -..+...
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            32 2336899999999999999999999999999998 5556788999999999999998743222     1 2234667


Q ss_pred             hHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH-HHc-C----ChHHHHHHhccCC
Q 043950          260 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV-IDA-G----LIVPLVNVLQDAE  333 (458)
Q Consensus       260 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~-~----~~~~L~~ll~~~~  333 (458)
                      ++++...+....... ..++..+..++.+. |+..+..|..+++.+++. .+....+ .+. +    ++........++.
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~  350 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGS  350 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence            777775444333222 24566677777788 999999999999999854 4555555 332 2    3444445556677


Q ss_pred             hhhHHHHHHHHHHhhcCCCH---HH----HHHH---HHCCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCC
Q 043950          334 FDIKKEAALAIANATVRGTH---EQ----IKYL---VREGCIK-PLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGS  402 (458)
Q Consensus       334 ~~~~~~a~~~L~~l~~~~~~---~~----~~~l---~~~~~l~-~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~  402 (458)
                      .++|..++.++.++......   +.    .+..   ...+-.. .+..+++.+=++++..++..+..++...-.      
T Consensus       351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg------  424 (503)
T PF10508_consen  351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG------  424 (503)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH------
Confidence            89999999999999654432   11    1111   1234444 788888888899999999999999976432      


Q ss_pred             CCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          403 TIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                             ........|.++.+.+=....+.+.++.=-.++.++.
T Consensus       425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence                   2556667777888877666667776655555555544

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.80  E-value=2.8e-17  Score=142.78  Aligned_cols=379  Identities=15%  Similarity=0.102  Sum_probs=268.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC--CCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 043950           34 SDDNSLQLEATTQFRILLSIE--RSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAV  111 (458)
Q Consensus        34 ~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i  111 (458)
                      ..+..+...+..++...+..+  ++...+.-+.++++..|.+...+++ .++..++.++|+|++.++.+.|..+.+.|+-
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa  131 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA  131 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence            344556666777777775432  1112333456778888888888886 7999999999999999999999999999998


Q ss_pred             HHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-ccccHHHHHHHHHHHHHhhcCC
Q 043950          112 PIFVKLLAS-------PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-EHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       112 ~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                      ..++++|+.       .+.+....+...|.|..-++...+..+.+.|+++.+...+. ...+...-+.......++.+-.
T Consensus       132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~  211 (604)
T KOG4500|consen  132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV  211 (604)
T ss_pred             eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence            888888865       23467777888899999888899999999999999888874 2233333333333333332211


Q ss_pred             C--CCChhhhhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchh------
Q 043950          184 P--QPPFDQVRPALPALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLT------  253 (458)
Q Consensus       184 ~--~~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~------  253 (458)
                      .  -........+.-.+.+++.+ -.+++.+.++..+...++++.-. -.+.+.|.++.++.++.. +...-+.      
T Consensus       212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence            0  01111223444445555553 35667777888888888665533 337788999999998876 3222222      


Q ss_pred             -hHHHHHhHhhcCChhhHHHHHhcC-ChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc
Q 043950          254 -PALWTVGNIVMGDDFQTQCIINHG-AVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD  331 (458)
Q Consensus       254 -~a~~~l~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~  331 (458)
                       .++....-+..+ ++..+.+...+ +++.+..++.++ +....-.+..+++|+++.. ....++++.+++..|++.+..
T Consensus       291 k~~~el~vllltG-DeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTG-DESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcC-chHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Confidence             223333333333 44445566555 899999999999 9999999999999999865 677889999999999999864


Q ss_pred             -----CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCc
Q 043950          332 -----AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGD  406 (458)
Q Consensus       332 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~  406 (458)
                           ++.+++..++.+|.|++--  ......+...|+.+.+...++...|.|..+-+..++.+....+..         
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~---------  436 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI---------  436 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------
Confidence                 4778899999999999873  345567789999999999999999999999999998887655533         


Q ss_pred             hhHHHHHHHhcchHHHHHhhhcCCC
Q 043950          407 VNQYARLVEEDEGFKKIEGLKSHDN  431 (458)
Q Consensus       407 ~~~~~~~~~~~~~~~~l~~l~~~~~  431 (458)
                         ..+...+-..+++|..-..+++
T Consensus       437 ---a~eL~kn~~l~ekLv~Wsks~D  458 (604)
T KOG4500|consen  437 ---ACELAKNPELFEKLVDWSKSPD  458 (604)
T ss_pred             ---HHHHhcCHHHHHHHHHhhhCCc
Confidence               2444445555666666655554

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=6.8e-16  Score=136.19  Aligned_cols=393  Identities=15%  Similarity=0.134  Sum_probs=298.3

Q ss_pred             hhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950           18 LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG   97 (458)
Q Consensus        18 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~   97 (458)
                      -++.-..+..||+.|..++.++.......|.++.-.  .++...+.+.|++..|++++...+ ++++...++.+.|++. 
T Consensus       299 KMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-  374 (791)
T KOG1222|consen  299 KMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-  374 (791)
T ss_pred             HHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-
Confidence            455556788999999999999999999999998666  678889999999999999999999 9999999999999999 


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950           98 TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS  177 (458)
Q Consensus        98 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~  177 (458)
                      +...+..++..|.+|.+..++.+...  ...|+..+..++.++ ..+.++.....++.+++.+..+.+.++-...+....
T Consensus       375 D~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ci  451 (791)
T KOG1222|consen  375 DSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCI  451 (791)
T ss_pred             cccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHH
Confidence            57889999999999999999976543  345777888887665 456777788889999988877777777777777778


Q ss_pred             HhhcCCCCCChhhhhhhHHHHHH-hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhH
Q 043950          178 KLCKGKPQPPFDQVRPALPALAQ-LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPA  255 (458)
Q Consensus       178 ~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a  255 (458)
                      |+|.+..+.+.......+..++. .+++.|.-    .+..+.|++++.......+++  .+..|...++.. +++....+
T Consensus       452 Nl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EC  525 (791)
T KOG1222|consen  452 NLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLEC  525 (791)
T ss_pred             HHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHH
Confidence            99988766666555666666654 45555543    345678888776645555554  466677777664 55677788


Q ss_pred             HHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--
Q 043950          256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--  332 (458)
Q Consensus       256 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--  332 (458)
                      +.+++|+.-..-.+...+.+.+++|.+-..|..+. ..++.-...-+++.++... .....+...++++.++++|+..  
T Consensus       526 lGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~-~cA~Lla~a~~i~tlieLL~a~Qe  604 (791)
T KOG1222|consen  526 LGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL-DCARLLAPAKLIDTLIELLQACQE  604 (791)
T ss_pred             HHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh-HHHHHhCccccHHHHHHHHHhhcc
Confidence            99999998767777777778899999999997653 2355666667777776542 4455566789999999999764  


Q ss_pred             ChhhHHHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHH
Q 043950          333 EFDIKKEAALAIANATVRGTHEQIKYLV-REGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYA  411 (458)
Q Consensus       333 ~~~~~~~a~~~L~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  411 (458)
                      |.+.....++++..+..+  ...+..++ +...-..+++++...+.++++.|-.+|..+....+++.+.+.    .+.| 
T Consensus       605 DDEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~----~EkF-  677 (791)
T KOG1222|consen  605 DDEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIA----GEKF-  677 (791)
T ss_pred             cchHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHh----hhhc-
Confidence            788899999999999875  23444444 556677899999999999999999999999998888765411    1111 


Q ss_pred             HHHHhcchHHHHHhhhcCCCh
Q 043950          412 RLVEEDEGFKKIEGLKSHDNN  432 (458)
Q Consensus       412 ~~~~~~~~~~~l~~l~~~~~~  432 (458)
                       .-.++++++.++.-+.++++
T Consensus       678 -rwHNsQWLeMVEs~q~ddsE  697 (791)
T KOG1222|consen  678 -RWHNSQWLEMVESQQRDDSE  697 (791)
T ss_pred             -ccchhHHHHHHHHhhccchh
Confidence             12356677777755544443

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.77  E-value=1e-16  Score=150.53  Aligned_cols=369  Identities=15%  Similarity=0.137  Sum_probs=262.9

Q ss_pred             hhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCC-ccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950           18 LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERS-PRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS   96 (458)
Q Consensus        18 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~   96 (458)
                      ..+.+|+|+.|+.++.+...++|..|+++|+|+..+... ++.-.+.+.++++.++++|....+.++++....+|.|+++
T Consensus       270 ~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS  349 (717)
T KOG1048|consen  270 RVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS  349 (717)
T ss_pred             HHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc
Confidence            346789999999999999999999999999999776532 3677888999999999999985558999999999999999


Q ss_pred             CChhhHHHHHhCCChHHHHHhhCC----------C----CHHHHHHHHHHHHHhhcCCCchhhHHhhh-CCHHHHHHHhc
Q 043950           97 GTSMNTNVVIDHGAVPIFVKLLAS----------P----SDDVREQAVWALGNVAADSPGCRNLVLRE-EALIPLLAQLN  161 (458)
Q Consensus        97 ~~~~~~~~~~~~~~i~~L~~ll~~----------~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~l~~~l~  161 (458)
                       ++..+..++... +..|..-+-.          +    ...+..++..+|.|++....+.|+.+.+. |.++.|+..+.
T Consensus       350 -~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq  427 (717)
T KOG1048|consen  350 -NDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQ  427 (717)
T ss_pred             -hhHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHH
Confidence             466666666543 6666554422          1    25677899999999998777777777654 67888888775


Q ss_pred             -----ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-------------
Q 043950          162 -----EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG-------------  223 (458)
Q Consensus       162 -----~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~-------------  223 (458)
                           ...|....+++..++.|++..............+...-.......+.   ....|++.....             
T Consensus       428 ~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~  504 (717)
T KOG1048|consen  428 TAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPER  504 (717)
T ss_pred             HHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcc---cccccccchhhhchhcccccCCccc
Confidence                 23456678999999999986532111000111111111111111111   223333333222             


Q ss_pred             --ChhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCChhh----HHHH-HhcCChHHHHHHhccCChhhHH
Q 043950          224 --TNDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQ----TQCI-INHGAVPCLLALLIHNHKKSIK  295 (458)
Q Consensus       224 --~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~----~~~~-~~~~~~~~l~~ll~~~~~~~v~  295 (458)
                        .+.-.+.+....++..-..++.. .+....+.++.+|-|++.+....    +..+ .+..+++.++++|+.+ ++.|.
T Consensus       505 ~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv  583 (717)
T KOG1048|consen  505 ATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVV  583 (717)
T ss_pred             ccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHH
Confidence              11111223334455554444543 46778899999999999876433    3333 4778999999999999 99999


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC------ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 043950          296 KVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA------EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLC  369 (458)
Q Consensus       296 ~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~  369 (458)
                      ..++.+|.|++.+-  ..+.++..++++.|++.|...      +.++...++..|.+++.. +....+.+.+.++++.|+
T Consensus       584 ~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~  660 (717)
T KOG1048|consen  584 RSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLR  660 (717)
T ss_pred             HHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHH
Confidence            99999999999753  234555678999999999754      468889999999999864 678888999999999999


Q ss_pred             hhccCC-CHHHHHHHHHHHHHHHHhch
Q 043950          370 DLLLCV-DPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       370 ~ll~~~-~~~v~~~~~~~l~~l~~~~~  395 (458)
                      .+..+. ++++.+.+...+..+..+.+
T Consensus       661 ~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  661 LISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            998764 55788888888888876644

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=1.1e-15  Score=128.79  Aligned_cols=309  Identities=14%  Similarity=0.150  Sum_probs=248.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH
Q 043950           34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-DYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVP  112 (458)
Q Consensus        34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  112 (458)
                      +++..+.+.++.+|..+...     ...+.+..+...++++|... ++.++....+.++..-+...+.+|+.+++.++++
T Consensus       118 ~~~~~~l~ksL~al~~lt~~-----qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHK-----QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcC-----CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            56788888888888887443     23466778889999998653 2367888888999988888899999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhcCCC---------chhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          113 IFVKLLAS-PSDDVREQAVWALGNVAADSP---------GCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       113 ~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      .+.+.+.. +...+.+...|++.-+..+++         .....+...|++..|++.+.-.-+|.+....+.+|..++-.
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99987765 444677889999999886653         23445677788899999997777899999999999999877


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCC-ChH---HHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHH
Q 043950          183 KPQPPFDQVRPALPALAQLIHLD-DEE---VLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPAL  256 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~~~-~~~---~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~  256 (458)
                      +.........|++..++.++.+. +..   ....+++.|..++ .+++....+++.|+.+.++.++..  +++.+...++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            54444455589999999999873 333   4466788888888 445567779999999999998754  6788999999


Q ss_pred             HHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChh
Q 043950          257 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFD  335 (458)
Q Consensus       257 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  335 (458)
                      .+++-++-..++....+++.|+-...++.++..+ ...++++|||.+.|++.++.++...++.. +++.|+......++.
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~t  430 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHET  430 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999887543 45899999999999999887887777775 577888888888888


Q ss_pred             hHHHHHHHHHHhhc
Q 043950          336 IKKEAALAIANATV  349 (458)
Q Consensus       336 ~~~~a~~~L~~l~~  349 (458)
                      +...|-.+|..+-.
T Consensus       431 ce~~akaALRDLGc  444 (461)
T KOG4199|consen  431 CEAAAKAALRDLGC  444 (461)
T ss_pred             HHHHHHHHHHhcCc
Confidence            88888888887743

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.74  E-value=4.7e-16  Score=152.80  Aligned_cols=333  Identities=18%  Similarity=0.162  Sum_probs=255.4

Q ss_pred             CChhhHhhccHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCCCcc--HHHHHHcCCHHHHHHhh-------cCC----
Q 043950           15 SLNLQTKLEILPAMVAGVWSD---DNSLQLEATTQFRILLSIERSPR--IEDVIQAGVVPRFVEFL-------MRE----   78 (458)
Q Consensus        15 ~~~~~~~~~~i~~l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~ll-------~~~----   78 (458)
                      ..-.++..|.+|.|++++..+   +.+.+..|-.+|.++.....++.  ++++.-..+++.+...+       +..    
T Consensus       227 sCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~  306 (2195)
T KOG2122|consen  227 SCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAI  306 (2195)
T ss_pred             hhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            345788899999999999954   46788889999999987653222  22221112222222222       111    


Q ss_pred             --CCHHHHH-HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhcCCCch
Q 043950           79 --DYPQLQY-EAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS------------PSDDVREQAVWALGNVAADSPGC  143 (458)
Q Consensus        79 --~~~~i~~-~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------------~~~~~~~~a~~~L~~l~~~~~~~  143 (458)
                        ...+-+. .|+.+|..++. ++++|..+-+.|++.++-.|+.-            ....+|..+..+|.||+.++...
T Consensus       307 apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~N  385 (2195)
T KOG2122|consen  307 APASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVAN  385 (2195)
T ss_pred             CCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccc
Confidence              1123344 67778888887 69999999999999999988742            23579999999999999777554


Q ss_pred             hh-HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhh--hhhHHHHHH-hhcCCChHHHHHHHHHHHH
Q 043950          144 RN-LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV--RPALPALAQ-LIHLDDEEVLSDACWTLSY  219 (458)
Q Consensus       144 ~~-~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~-ll~~~~~~~~~~~~~~l~~  219 (458)
                      +. .+-..|++..++..| .+...++......+|.||+..-....+...  .|-+..|+. .++.........++.+|||
T Consensus       386 Ka~LCs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWN  464 (2195)
T KOG2122|consen  386 KATLCSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWN  464 (2195)
T ss_pred             hhhhhhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhh
Confidence            44 445678899999999 555567888999999999988644444433  344444544 4556677889999999999


Q ss_pred             hccCChhhHHHHHHh-CcHHHHHHHhCCC----CccchhhHHHHHhHhh---cCChhhHHHHHhcCChHHHHHHhccCCh
Q 043950          220 LSYGTNDKIQVVIEA-GVCRRLVELLGHP----SPSVLTPALWTVGNIV---MGDDFQTQCIINHGAVPCLLALLIHNHK  291 (458)
Q Consensus       220 l~~~~~~~~~~~~~~-~~i~~L~~ll~~~----~~~~~~~a~~~l~~l~---~~~~~~~~~~~~~~~~~~l~~ll~~~~~  291 (458)
                      ++.+..++...+... |.+..|+.+|...    .-.+.+.+-.+|.|++   ..++.+++.+.+++.+..|++.|++. .
T Consensus       465 LSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-S  543 (2195)
T KOG2122|consen  465 LSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-S  543 (2195)
T ss_pred             hhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-c
Confidence            998877666656554 8899999999875    2357778878877765   35677888888999999999999999 9


Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950          292 KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR  350 (458)
Q Consensus       292 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~  350 (458)
                      ..+..++|.+|+||...+++..+.+++.|.++.|..++.+.+..+..-++.+|.|++.+
T Consensus       544 LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  544 LTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             eEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999864

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.73  E-value=5.6e-15  Score=128.70  Aligned_cols=404  Identities=11%  Similarity=0.030  Sum_probs=282.7

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC------CCCHHHHHHHHHHHHHHc
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR------EDYPQLQYEAAWALTNIA   95 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~i~~~a~~~L~~l~   95 (458)
                      .+.++.|.+..+|++.++..+..++|.|++..+ .+.+..+.+.|+-..+++.|+.      +...+....+...|.|..
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~  164 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI  164 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence            567888888889999999999999999996665 8889999999997777777753      222356677788999999


Q ss_pred             CCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcC-CCchhhHHhhhCCHHHHHHHhcccccHHHHHHH
Q 043950           96 SGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAAD-SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIA  172 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a  172 (458)
                      .++.+.+...++.|+++.|...+.-  .+....+.....+.|+.+- .+...+...+......+++++.....+++.+.+
T Consensus       165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~  244 (604)
T KOG4500|consen  165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI  244 (604)
T ss_pred             CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence            9999999999999999988887643  5566666666666665532 122234445566777788888777778888999


Q ss_pred             HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-CC-------hHHHHHHHHHHHHhccCChhhHHHHHHhC-cHHHHHHH
Q 043950          173 TWTLSKLCKGKPQPPFDQVRPALPALAQLIHL-DD-------EEVLSDACWTLSYLSYGTNDKIQVVIEAG-VCRRLVEL  243 (458)
Q Consensus       173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~l  243 (458)
                      ...+...+.++...-.....|.+..+..+++. .+       ......++....-+..+++. .+.+...+ +++.+...
T Consensus       245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw  323 (604)
T KOG4500|consen  245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESW  323 (604)
T ss_pred             HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHH
Confidence            99999999886444444447777777777764 22       12223333334434444443 33344444 89999999


Q ss_pred             hCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC----hhhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 043950          244 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH----KKSIKKVACWTISNITAGNREQIQAVIDA  319 (458)
Q Consensus       244 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~~v~~~a~~~l~nl~~~~~~~~~~l~~~  319 (458)
                      +.+++....-.+..+++|+++ .+..+.++++.+++..+++++....    +..++..++.++.|++-.. .+...++..
T Consensus       324 ~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~a  401 (604)
T KOG4500|consen  324 FRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPA  401 (604)
T ss_pred             hcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhcccc
Confidence            999999999999999999998 4556677888999999999996521    4577889999999998633 345678889


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHH-HHHHHHHHHHHHHHhchhhc
Q 043950          320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK-IVTVCLEGLENILKVGEAEK  398 (458)
Q Consensus       320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~-v~~~~~~~l~~l~~~~~~~~  398 (458)
                      |+.+.+...++...+.+...-+..+.-+....+.-..+.......++.|++--+++|-. |.-.....+.-+++..-.. 
T Consensus       402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k-  480 (604)
T KOG4500|consen  402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK-  480 (604)
T ss_pred             chHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh-
Confidence            99999999999999999888888777766533222222222334566666666666643 4444555555555432211 


Q ss_pred             ccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHH
Q 043950          399 NTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK  440 (458)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~  440 (458)
                                ...-.+-+.||++.......+++-..++.|..
T Consensus       481 ----------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEalV  512 (604)
T KOG4500|consen  481 ----------DVILTVPKSGGIKEKVSMFTKNHINMQNEALV  512 (604)
T ss_pred             ----------hhHhhccccccHHHHHHHHHHhhHHHhHHHHH
Confidence                      12444556777777776655555555554443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.7e-14  Score=140.73  Aligned_cols=392  Identities=15%  Similarity=0.158  Sum_probs=270.5

Q ss_pred             cHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           24 ILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        24 ~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      .-..++..+.+ ..+.++..-+..+..+++..-++.+.     ++++.|++..++++ +..|+.|+.+|..+........
T Consensus        80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WP-----ell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~  153 (1075)
T KOG2171|consen   80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWP-----ELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTL  153 (1075)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchH-----HHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhcccc
Confidence            34556666665 45888888888888888875333222     46778888888999 8999999999999887332221


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhh-hCCHHHHHHHhc---ccccHHHHHHHHHHHHH
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR-EEALIPLLAQLN---EHAKLSMLRIATWTLSK  178 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~  178 (458)
                      ...+ ..+.+.+.+.+.+++..+|..++++++.++...+.....+.. ...+|.++..+.   +..+......++.++..
T Consensus       154 ~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E  232 (1075)
T KOG2171|consen  154 QPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE  232 (1075)
T ss_pred             chhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence            1111 123455556666666669999999999998655322222211 235666776664   34555666778888888


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChhhHHH--------------------------
Q 043950          179 LCKGKPQPPFDQVRPALPALAQLIHLD--DEEVLSDACWTLSYLSYGTNDKIQV--------------------------  230 (458)
Q Consensus       179 l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~--------------------------  230 (458)
                      +....|..-......++........+.  +..+|..++.++..+++..+...+.                          
T Consensus       233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~  312 (1075)
T KOG2171|consen  233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS  312 (1075)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence            887766555555566666666666644  4677777777777666542211000                          


Q ss_pred             -------------------HHH------------hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCCh
Q 043950          231 -------------------VIE------------AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAV  279 (458)
Q Consensus       231 -------------------~~~------------~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~  279 (458)
                                         .++            .-+++.+-.++.++++..|..++.+|+.++.++.+.....+ ..++
T Consensus       313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il  391 (1075)
T KOG2171|consen  313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKIL  391 (1075)
T ss_pred             cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHH
Confidence                               000            01456666777888889999999999999999988777655 4689


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHhhcCCCHHHHHH
Q 043950          280 PCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAIANATVRGTHEQIKY  358 (458)
Q Consensus       280 ~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~  358 (458)
                      +.++..|+++ ++.||..|+.+++.++.+-...+++-...-+.+.|+..+.+. +++++..|+.++.|+...+.++....
T Consensus       392 ~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p  470 (1075)
T KOG2171|consen  392 PIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP  470 (1075)
T ss_pred             HHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            9999999999 999999999999999987666677777777888899988765 77999999999999999877666554


Q ss_pred             HHHCCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC-CChHHHH
Q 043950          359 LVREGCIK-PLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH-DNNGIRE  436 (458)
Q Consensus       359 l~~~~~l~-~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~  436 (458)
                      ..+ ++++ .+..++++..+.+++.+..+|.......++.         -.+|...+     +..|...+.. .+++.+.
T Consensus       471 YLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~---------F~pY~d~~-----Mp~L~~~L~n~~~~d~r~  535 (1075)
T KOG2171|consen  471 YLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK---------FIPYFDRL-----MPLLKNFLQNADDKDLRE  535 (1075)
T ss_pred             HHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh---------hHhHHHHH-----HHHHHHHHhCCCchhhHH
Confidence            333 3455 4555667888899999999999998866653         33344444     5566655433 3344444


Q ss_pred             HHH
Q 043950          437 KAV  439 (458)
Q Consensus       437 ~a~  439 (458)
                      ..-
T Consensus       536 Lrg  538 (1075)
T KOG2171|consen  536 LRG  538 (1075)
T ss_pred             HHh
Confidence            333

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.1e-14  Score=126.91  Aligned_cols=381  Identities=18%  Similarity=0.108  Sum_probs=286.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 043950           35 DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIF  114 (458)
Q Consensus        35 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  114 (458)
                      ....+...|+..|.+++..  ......+...+++..|++.|+.++ .++.......|..++- ..+++..+.+.|++..|
T Consensus       275 KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL  350 (791)
T KOG1222|consen  275 KQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKL  350 (791)
T ss_pred             HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHH
Confidence            4466777788899999876  455667888899999999999999 7899999999999988 57889999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhh
Q 043950          115 VKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA  194 (458)
Q Consensus       115 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  194 (458)
                      ++++....++++..++..+.|++.+.. .+..++..|.+|.+..++.++..   ..-|...++.++.+...........+
T Consensus       351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdc  426 (791)
T KOG1222|consen  351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDC  426 (791)
T ss_pred             HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHH
Confidence            999999999999999999999987764 46677888999999999954332   34567778888887665566666889


Q ss_pred             HHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHH
Q 043950          195 LPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCI  273 (458)
Q Consensus       195 l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  273 (458)
                      ++.++..+- ..+.++-...+..-.|++-+. .+.+.+.+..++..|++.--.....   .-...+.|++.+.......+
T Consensus       427 i~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~---lLmK~vRniSqHeg~tqn~F  502 (791)
T KOG1222|consen  427 IKLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL---LLMKVVRNISQHEGATQNMF  502 (791)
T ss_pred             HHHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch---HHHHHHHHhhhccchHHHHH
Confidence            998886554 445555555555555676333 3456566666777777654332222   23456677776555454555


Q ss_pred             HhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhhcCC
Q 043950          274 INHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATVRG  351 (458)
Q Consensus       274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~  351 (458)
                      ++  .+..+...+....+...-.++..+++|+....-+..+.+.+...+|.+-..|..+  ..+++...+.+++.++.  
T Consensus       503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--  578 (791)
T KOG1222|consen  503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--  578 (791)
T ss_pred             HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--
Confidence            53  4667777777765677888999999999875555556666788999999988765  45678888888888876  


Q ss_pred             CHHHHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC
Q 043950          352 THEQIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH  429 (458)
Q Consensus       352 ~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  429 (458)
                      +......+...++++.++++++.  .+.+++...+.++..+++.....             .-.+.+...-..+.+|+++
T Consensus       579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr-------------~~miket~~~AylIDLMHD  645 (791)
T KOG1222|consen  579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR-------------RLMIKETALGAYLIDLMHD  645 (791)
T ss_pred             hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH-------------HHHHhhccchHHHHHHHhc
Confidence            44566667788999999999974  56677777777888887763332             5566677777889999999


Q ss_pred             CChHHHHHHHHHHHH
Q 043950          430 DNNGIREKAVKILET  444 (458)
Q Consensus       430 ~~~~v~~~a~~~l~~  444 (458)
                      .|.++++-+...+.-
T Consensus       646 kN~eiRkVCDn~LdI  660 (791)
T KOG1222|consen  646 KNAEIRKVCDNALDI  660 (791)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            999998877766543

>PRK09687 putative lyase; Provisional

Probab=99.70  E-value=8.1e-15  Score=128.08  Aligned_cols=256  Identities=14%  Similarity=0.107  Sum_probs=203.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      --++.|.++|.+++ ..+|..|++.|..+...           ..++.+..++.++++.+|..++++|+.+......   
T Consensus        23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence            45788999999999 89999999999988652           4478888899999999999999999998543211   


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN  225 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  225 (458)
                         ....++.|...+.+++++.++..++.+|.+++......    ....++.+...+.++++.++..+.++|+.+..   
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence               11246667777568889999999999999997543211    23456667788888999999999999987631   


Q ss_pred             hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950          226 DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI  305 (458)
Q Consensus       226 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl  305 (458)
                              ...++.|+.++.++++.++..|+.+|+.+...++         ..++.|+..+.+. +..||..|.++|+.+
T Consensus       158 --------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 --------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR  219 (280)
T ss_pred             --------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence                    1257899999999999999999999999943333         3577799999888 999999999999986


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHH
Q 043950          306 TAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCL  384 (458)
Q Consensus       306 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~  384 (458)
                      -  ++         .+++.|++.+.+++  ++..++.+|+.+-.   +.         .++.|..+++ ++|+.++..+.
T Consensus       220 ~--~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 K--DK---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             C--Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence            3  32         37899999999765  67889999999853   22         4778888886 78999999998


Q ss_pred             HHHHH
Q 043950          385 EGLEN  389 (458)
Q Consensus       385 ~~l~~  389 (458)
                      +++..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            88753

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=9.1e-14  Score=117.48  Aligned_cols=318  Identities=17%  Similarity=0.171  Sum_probs=246.6

Q ss_pred             HcCCHHHHHH---hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhc
Q 043950           64 QAGVVPRFVE---FLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAA  138 (458)
Q Consensus        64 ~~~~i~~L~~---ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~  138 (458)
                      ..|..+.++-   +-.+++ ..+...++.+|..+....|+    +.+..++..++.+|..  .+.++.-..+..+..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            4455554443   334455 67788888888888886665    4456778999998864  667888888888888888


Q ss_pred             CCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCC----------hhhhhhhHHHHHHhhcC-CCh
Q 043950          139 DSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP----------FDQVRPALPALAQLIHL-DDE  207 (458)
Q Consensus       139 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~----------~~~~~~~l~~l~~ll~~-~~~  207 (458)
                      .++..|+.+++.++++-+...+...+...+.+..+|+++.+...+..+-          .....+++..|.+.++. -||
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            8888999999999998888788665555789999999999987753211          11224567778888774 468


Q ss_pred             HHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC-ccc---hhhHHHHHhHhhcCChhhHHHHHhcCChHHHH
Q 043950          208 EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS-PSV---LTPALWTVGNIVMGDDFQTQCIINHGAVPCLL  283 (458)
Q Consensus       208 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~---~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~  283 (458)
                      .+....+.+|..++-.+ +..+.+.+.|++..+++++.+.+ ...   .+.++..|..++. ++.....+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence            99999999999998544 45667999999999999999843 333   3566777777764 777888899999999999


Q ss_pred             HHhc-cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 043950          284 ALLI-HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATVRGTHEQIKYLV  360 (458)
Q Consensus       284 ~ll~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~  360 (458)
                      .++. +..+|.|-.+++.+++-++..+|++-...++.|+-...++.++..  ...+++++++++.|++..+ .+++..++
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l  413 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILL  413 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHH
Confidence            8774 333789999999999999998889999999999999999988764  4678999999999999864 46666666


Q ss_pred             HCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950          361 REGCIKPLCDLLLCVDPKIVTVCLEGLENI  390 (458)
Q Consensus       361 ~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l  390 (458)
                      .. +++.|+..-...++.....+-.+|.-+
T Consensus       414 ~~-GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  414 AN-GIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             hc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            65 488899988888887777776676654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.68  E-value=1.4e-13  Score=126.49  Aligned_cols=406  Identities=15%  Similarity=0.075  Sum_probs=275.5

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhHHHH
Q 043950           27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY-PQLQYEAAWALTNIASGTSMNTNVV  105 (458)
Q Consensus        27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~  105 (458)
                      .++..+.+.+++....|..-..+++.+. .++...+++.|.++.|+.+++..+. .+.+...+.++.....+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            3455566778888888889999988876 5556678999999999999987652 4667677778888888788888899


Q ss_pred             HhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCCCchhh--HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          106 IDHGAVPIFVKLLASPS-DDVREQAVWALGNVAADSPGCRN--LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       106 ~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      .+.+.++.|.+++.+++ ..+++.++.++.++...++....  .......+..+...+ ..+.....+.-+....++|..
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~  170 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST  170 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence            99999999999999888 88999999999999876643211  112222333333333 223333444445555566655


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHH---HhccCChhhHH----HHHHhCcHH--HHHHHhCCCCccchh
Q 043950          183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLS---YLSYGTNDKIQ----VVIEAGVCR--RLVELLGHPSPSVLT  253 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~---~l~~~~~~~~~----~~~~~~~i~--~L~~ll~~~~~~~~~  253 (458)
                      ..........++.+.+.-++.......+..++.+++   ++..+++....    ...+.|+.+  .+.+++++++.+.+-
T Consensus       171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l  250 (678)
T KOG1293|consen  171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL  250 (678)
T ss_pred             chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence            433333344777778887887778889999999999   77666554332    233445555  566677777766666


Q ss_pred             hHHHHHhHhhcCChh---------------------------------------------------hHHHHHhcCChHHH
Q 043950          254 PALWTVGNIVMGDDF---------------------------------------------------QTQCIINHGAVPCL  282 (458)
Q Consensus       254 ~a~~~l~~l~~~~~~---------------------------------------------------~~~~~~~~~~~~~l  282 (458)
                      .++.++.++...+..                                                   ......+....+..
T Consensus       251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~  330 (678)
T KOG1293|consen  251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT  330 (678)
T ss_pred             HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence            666666665543200                                                   00000001111111


Q ss_pred             HHHh----------------------------------------------------ccCChhhHHHHHHHHHHHhhcCCH
Q 043950          283 LALL----------------------------------------------------IHNHKKSIKKVACWTISNITAGNR  310 (458)
Q Consensus       283 ~~ll----------------------------------------------------~~~~~~~v~~~a~~~l~nl~~~~~  310 (458)
                      .+++                                                    ... |..++..|+.++-++++.-.
T Consensus       331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~  409 (678)
T KOG1293|consen  331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVS  409 (678)
T ss_pred             HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHH
Confidence            1111                                                    111 33444555555555543211


Q ss_pred             HHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950          311 EQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI  390 (458)
Q Consensus       311 ~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l  390 (458)
                      .....+-...+..+|+.++..++..++..++.+++|++...+ .....++..|+++.+..++..+++.++..++|+|+++
T Consensus       410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l  488 (678)
T KOG1293|consen  410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL  488 (678)
T ss_pred             HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            222223345689999999999999999999999999987544 4457778999999999999999999999999999999


Q ss_pred             HHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950          391 LKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG  448 (458)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  448 (458)
                      +-...+..            ...+-.-=+...|..+.++++..|++.+.+++.++..+
T Consensus       489 ~f~~de~~------------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  489 MFNCDEEE------------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HhcchHHH------------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            86554432            22222222367888899999999999999999998776

>PRK09687 putative lyase; Provisional

Probab=99.68  E-value=2.2e-14  Score=125.35  Aligned_cols=254  Identities=14%  Similarity=0.124  Sum_probs=200.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .++.|.+.|.+++..++..|+++|..+-.            ..+++.+..++++++ +.+|..|+++|+.+..... .  
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~-~--   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKR-C--   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCcc-c--
Confidence            58889999999999999999999988722            135778888888888 8999999999999876321 1  


Q ss_pred             HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          104 VVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       104 ~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                         ....++.|..+ ++++++.||..++.+|++++......     ....+..+...+ .++++.++..+.++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11346788876 67789999999999999996443221     111344555555 67789999999999976532 


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950          183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI  262 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l  262 (458)
                               ...++.|+.++.++++.++..++.+|+.+...++         ..++.|+..+.+.++.++..|.+.|+.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     4588999999999999999999999999842222         3567899999999999999999999886


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-cCChhhHHHHH
Q 043950          263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-DAEFDIKKEAA  341 (458)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~a~  341 (458)
                      -.           ...++.|++.|.++ +  ++..++.+|+++.  +++         .+|.|..++. .+|..++..+.
T Consensus       220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig--~~~---------a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELG--DKT---------LLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcC--CHh---------HHHHHHHHHhhCCChhHHHHHH
Confidence            32           25789999999877 4  7788999999985  332         7899999997 77999999999


Q ss_pred             HHHHH
Q 043950          342 LAIAN  346 (458)
Q Consensus       342 ~~L~~  346 (458)
                      +++..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            88753

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.67  E-value=8.8e-14  Score=127.73  Aligned_cols=375  Identities=13%  Similarity=0.079  Sum_probs=253.6

Q ss_pred             hhHhhccHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q 043950           18 LQTKLEILPAMVAGVWSDD--NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIA   95 (458)
Q Consensus        18 ~~~~~~~i~~l~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~   95 (458)
                      -..+.|+++.+..++..++  +..+...+..+..+.+++ ......+.+.+.++.|++++.+++...++...++++..+.
T Consensus        46 ~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~If  124 (678)
T KOG1293|consen   46 TNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIF  124 (678)
T ss_pred             hhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHH
Confidence            4677899999999988665  556656666777777776 7788899999999999999999885588999999999998


Q ss_pred             CCChhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950           96 SGTSMNTNVVI--DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT  173 (458)
Q Consensus        96 ~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~  173 (458)
                      ..++..-..+.  ...+++.+..++.-+.......-+....+++.. +..+....+.|+.+.+--.+ ...+...+..+.
T Consensus       125 et~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL  202 (678)
T KOG1293|consen  125 ETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAAL  202 (678)
T ss_pred             hcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHH
Confidence            85543333322  223455555555424344444444444555443 34455566666666555444 555677888888


Q ss_pred             HHHH---HhhcCCCCCChhhh-----hhhHH--HHHHhhcCCChHHHHHHHHHHHHhccCChh-----------------
Q 043950          174 WTLS---KLCKGKPQPPFDQV-----RPALP--ALAQLIHLDDEEVLSDACWTLSYLSYGTND-----------------  226 (458)
Q Consensus       174 ~~l~---~l~~~~~~~~~~~~-----~~~l~--~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~-----------------  226 (458)
                      .+++   ++..+++.......     .++.+  .+.+++++++...+..++.++.++...+..                 
T Consensus       203 ~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~  282 (678)
T KOG1293|consen  203 LCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSL  282 (678)
T ss_pred             HHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHH
Confidence            8888   66666543333222     34444  345566666666666666666655533310                 


Q ss_pred             ----------------------------------hHHHHHHhCcHHHHHHHhC---------------------------
Q 043950          227 ----------------------------------KIQVVIEAGVCRRLVELLG---------------------------  245 (458)
Q Consensus       227 ----------------------------------~~~~~~~~~~i~~L~~ll~---------------------------  245 (458)
                                                        ......+....+.+.+++.                           
T Consensus       283 i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~  362 (678)
T KOG1293|consen  283 IVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLE  362 (678)
T ss_pred             HHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhh
Confidence                                              0000011111222222211                           


Q ss_pred             -------------------------CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHH
Q 043950          246 -------------------------HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACW  300 (458)
Q Consensus       246 -------------------------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~  300 (458)
                                               ..+...+.+|+.++.++++.-......+-...+..++++++..+ +..++..+..
T Consensus       363 ~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lg  441 (678)
T KOG1293|consen  363 YGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLG  441 (678)
T ss_pred             hhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHH
Confidence                                     01123444555555555443222222233567899999999888 8999999999


Q ss_pred             HHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHH
Q 043950          301 TISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIV  380 (458)
Q Consensus       301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  380 (458)
                      +|+|++.........++..|++..+..++.+.++.++..+.|+|.++..+++......+...-....+..+.+++++.|+
T Consensus       442 ai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vq  521 (678)
T KOG1293|consen  442 AICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQ  521 (678)
T ss_pred             HHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHH
Confidence            99999986667778899999999999999999999999999999999998877776666666667788888899999999


Q ss_pred             HHHHHHHHHHHHhchh
Q 043950          381 TVCLEGLENILKVGEA  396 (458)
Q Consensus       381 ~~~~~~l~~l~~~~~~  396 (458)
                      +.|+.+++|+....++
T Consensus       522 eq~fqllRNl~c~~~~  537 (678)
T KOG1293|consen  522 EQCFQLLRNLTCNSRK  537 (678)
T ss_pred             HHHHHHHHHhhcCcHH
Confidence            9999999999876443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=5.3e-13  Score=130.44  Aligned_cols=396  Identities=17%  Similarity=0.155  Sum_probs=271.0

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           24 ILPAMVAGVW-SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        24 ~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      .++.|...+. +.|+++|..|+..+++++..- -.....=.+..+-..|+..+.++..+.+|..-+.++..++...-.. 
T Consensus        37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-  114 (1075)
T KOG2171|consen   37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-  114 (1075)
T ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence            5777777777 578999999999999997752 2222222344566677777777665899999999999998842221 


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch-hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC-RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                       .  =.++++.|.+..+++++..|+.|+.+|+++...-+.. +..+.+  ..+.+.+.+ .+++..++..+..++..++.
T Consensus       115 -~--WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~  188 (1075)
T KOG2171|consen  115 -K--WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTM-TDPSSPVRVAAVRALGAFAE  188 (1075)
T ss_pred             -c--hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhc-cCCcchHHHHHHHHHHHHHH
Confidence             0  0245778888888999999999999999997543321 111111  222233333 44444499999999988876


Q ss_pred             CCC--CCChhhhhhhHHHHHH----hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC--Cccchh
Q 043950          182 GKP--QPPFDQVRPALPALAQ----LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP--SPSVLT  253 (458)
Q Consensus       182 ~~~--~~~~~~~~~~l~~l~~----ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~  253 (458)
                      ..+  ..........+|.++.    .+..+|.+....++.++..++...+......... ++....++.++.  ++.+|.
T Consensus       189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~  267 (1075)
T KOG2171|consen  189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRH  267 (1075)
T ss_pred             HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHH
Confidence            653  2222333556665554    4456677778888888888887766555544432 455555555543  456677


Q ss_pred             hHHHHHhHhhcCChhhHH---------------------------------------------HHH-----h---c----
Q 043950          254 PALWTVGNIVMGDDFQTQ---------------------------------------------CII-----N---H----  276 (458)
Q Consensus       254 ~a~~~l~~l~~~~~~~~~---------------------------------------------~~~-----~---~----  276 (458)
                      .|+.+|..++...+...+                                             ..+     .   .    
T Consensus       268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p  347 (1075)
T KOG2171|consen  268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP  347 (1075)
T ss_pred             HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence            776666665533111100                                             000     0   1    


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHH
Q 043950          277 GAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQI  356 (458)
Q Consensus       277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  356 (458)
                      -+++.+-.++.++ ++.-|..+..+|+.++.|+.+.+...++ .+++..+..+.++++.||..|+.+++.++..-.++..
T Consensus       348 ~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq  425 (1075)
T KOG2171|consen  348 PLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ  425 (1075)
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence            1345555677788 9999999999999999999888877665 4899999999999999999999999999987655544


Q ss_pred             HHHHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHH-HHHhhhcCCChHH
Q 043950          357 KYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK-KIEGLKSHDNNGI  434 (458)
Q Consensus       357 ~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~v  434 (458)
                      ++ ....+++.|+..+++ .++.|...+..++-+++....+..        ..+|...+     ++ .+..|..++.+.+
T Consensus       426 k~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~--------l~pYLd~l-----m~~~l~~L~~~~~~~v  491 (1075)
T KOG2171|consen  426 KK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI--------LEPYLDGL-----MEKKLLLLLQSSKPYV  491 (1075)
T ss_pred             HH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH--------HHHHHHHH-----HHHHHHHHhcCCchhH
Confidence            44 556678888888876 466999999999999998766642        44556555     44 6667778888888


Q ss_pred             HHHHHHHHHH
Q 043950          435 REKAVKILET  444 (458)
Q Consensus       435 ~~~a~~~l~~  444 (458)
                      ++.+...|..
T Consensus       492 ~e~vvtaIas  501 (1075)
T KOG2171|consen  492 QEQAVTAIAS  501 (1075)
T ss_pred             HHHHHHHHHH
Confidence            8877766643

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=3.2e-14  Score=130.32  Aligned_cols=355  Identities=17%  Similarity=0.176  Sum_probs=227.2

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHH-HH---HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED-VI---QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG   97 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~---~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~   97 (458)
                      .+.+|.|.++|.+++...+..|..+|.+++.+. .+..+. ..   -.-.+|.++++.++++ +.+|..|+.|+..+.-.
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~  204 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIII  204 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeec
Confidence            456899999999999999999999999997653 221111 11   1236899999999998 99999999999988774


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhh-hCCHHHHHHHhcccccHHHHHHHHHHH
Q 043950           98 TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR-EEALIPLLAQLNEHAKLSMLRIATWTL  176 (458)
Q Consensus        98 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~a~~~l  176 (458)
                      .++....-++ ..+..+..+-.+.++++|.+.+.++..+....+.  ..+-. .+++++++... ++.++.+.-.||...
T Consensus       205 ~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~t-qd~dE~VALEACEFw  280 (885)
T KOG2023|consen  205 QTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRT-QDVDENVALEACEFW  280 (885)
T ss_pred             CcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHc-cCcchhHHHHHHHHH
Confidence            4443332222 3467777788889999999999999999876554  11111 24556666665 677888999999999


Q ss_pred             HHhhcCCCCCChhhhh----hhHHHHHHhhcCCC----------------------------------------------
Q 043950          177 SKLCKGKPQPPFDQVR----PALPALAQLIHLDD----------------------------------------------  206 (458)
Q Consensus       177 ~~l~~~~~~~~~~~~~----~~l~~l~~ll~~~~----------------------------------------------  206 (458)
                      ..++..+  .......    .++|.++.-+.-++                                              
T Consensus       281 la~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD  358 (885)
T KOG2023|consen  281 LALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD  358 (885)
T ss_pred             HHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence            9999875  4444444    44444443222100                                              


Q ss_pred             ----------hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhc
Q 043950          207 ----------EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH  276 (458)
Q Consensus       207 ----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  276 (458)
                                +.+|.....++.-++..-.   +.+.. -++|.|-+.|.++++.+|+.+..++|.++.++-...-.-. .
T Consensus       359 e~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-p  433 (885)
T KOG2023|consen  359 EDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-P  433 (885)
T ss_pred             ccccccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-H
Confidence                      2233333333332221111   11111 2456666667778999999999999999875532211111 1


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHHhhcC--CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHH
Q 043950          277 GAVPCLLALLIHNHKKSIKKVACWTISNITAG--NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHE  354 (458)
Q Consensus       277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  354 (458)
                      .++|.++.+|.+. .+-||..+||+|+..+..  ..+ .+.... .++..|++.+-+.+.+|++.|+.++..+-+....+
T Consensus       434 eLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e  510 (885)
T KOG2023|consen  434 ELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE  510 (885)
T ss_pred             HHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch
Confidence            3789999999998 999999999999998751  111 112222 14445566666779999999999999998766555


Q ss_pred             HHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Q 043950          355 QIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       355 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ...++..  .+..|...+..-..+-.....++++.+++..
T Consensus       511 LVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv  548 (885)
T KOG2023|consen  511 LVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSV  548 (885)
T ss_pred             hHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence            5554322  3444444443211111123345555555543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.63  E-value=1.6e-13  Score=117.00  Aligned_cols=239  Identities=17%  Similarity=0.184  Sum_probs=184.5

Q ss_pred             hhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh
Q 043950          191 VRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ  269 (458)
Q Consensus       191 ~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~  269 (458)
                      ..+-++.++.+|+ +.|+.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+ .
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-n   87 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-N   87 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-h
Confidence            3667788999998 568999999999999987544 466778889999999999999999999999999999987443 3


Q ss_pred             HHHHHhcCChHHHHHHhcc-CChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhh
Q 043950          270 TQCIINHGAVPCLLALLIH-NHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANAT  348 (458)
Q Consensus       270 ~~~~~~~~~~~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~  348 (458)
                      ...+ +. .++.+.+...+ +.+..++..+..+|.|++..+ ++ +.++. +.++.++.++..++..+|..++.+|.|++
T Consensus        88 ~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 QEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             HHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-ch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3333 22 45555554433 346789999999999998643 22 33332 37999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHCCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhchhhcccCC-CCCchhHHHHHHHhcc-hHHHHHh
Q 043950          349 VRGTHEQIKYLVREGCIKPLCDLLLCV-DPKIVTVCLEGLENILKVGEAEKNTGS-TIGDVNQYARLVEEDE-GFKKIEG  425 (458)
Q Consensus       349 ~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~~  425 (458)
                      .  ++.....++..+++..++.+++.. +.++...++..+.+|-.........-. .-.....+...|.+.+ .-++|..
T Consensus       163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~  240 (254)
T PF04826_consen  163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA  240 (254)
T ss_pred             c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence            8  667888899999999999999875 668888999999999665444321110 0012334457777776 7889999


Q ss_pred             hhcCCChHHHHHH
Q 043950          426 LKSHDNNGIREKA  438 (458)
Q Consensus       426 l~~~~~~~v~~~a  438 (458)
                      |.+|++++|+.+.
T Consensus       241 l~~h~d~ev~~~v  253 (254)
T PF04826_consen  241 LANHPDPEVKEQV  253 (254)
T ss_pred             HHcCCCHHHhhhc
Confidence            9999999999763

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.62  E-value=2.4e-14  Score=141.14  Aligned_cols=270  Identities=20%  Similarity=0.187  Sum_probs=225.2

Q ss_pred             HHHHH-HHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC--------C---CHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           37 NSLQL-EATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE--------D---YPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        37 ~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~---~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      ..-++ .|+..|.++ +++ ++.++.+-+.|++..+-+|+.-.        +   ...+|..|..+|.||..++..++..
T Consensus       311 ~~H~lcaA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~  388 (2195)
T KOG2122|consen  311 DEHQLCAALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKAT  388 (2195)
T ss_pred             cchhhHHHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhh
Confidence            34555 667777777 444 78899999999999988887421        1   2368999999999999988888877


Q ss_pred             HHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          105 VID-HGAVPIFVKLLASPSDDVREQAVWALGNVAAD-SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       105 ~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      +.. .|++..++..|.+...++.+....+|.||+-. +...+..+.+.|-+..|.........+..++..+.+|+||+.+
T Consensus       389 LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH  468 (2195)
T KOG2122|consen  389 LCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH  468 (2195)
T ss_pred             hhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence            774 59999999999999999999999999999943 4456777888899999998887777777889999999999988


Q ss_pred             C--CCCChhhhhhhHHHHHHhhcC----CChHHHHHHHHHHHHhcc---CChhhHHHHHHhCcHHHHHHHhCCCCccchh
Q 043950          183 K--PQPPFDQVRPALPALAQLIHL----DDEEVLSDACWTLSYLSY---GTNDKIQVVIEAGVCRRLVELLGHPSPSVLT  253 (458)
Q Consensus       183 ~--~~~~~~~~~~~l~~l~~ll~~----~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  253 (458)
                      .  +...+-.+.|++..|+.+|.-    +.-.+++.+-.+|.|++.   ......+.+.++..+..|+..|++.+-.+..
T Consensus       469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVS  548 (2195)
T KOG2122|consen  469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVS  548 (2195)
T ss_pred             ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEee
Confidence            7  333445569999999999974    346778888888888773   3455667788899999999999999999999


Q ss_pred             hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCC
Q 043950          254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN  309 (458)
Q Consensus       254 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  309 (458)
                      ++|.+|+||+..++...+.+++.|.++.+..++.+. +..+..-++.+|.|+....
T Consensus       549 NaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  549 NACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             cchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999 8889999999999998643

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.62  E-value=5e-13  Score=136.68  Aligned_cols=275  Identities=20%  Similarity=0.187  Sum_probs=219.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      ..++.|++.|.++++.+|..|+..|..+..            .+.++.|.+.|.+++ +.+|..|+..|..+....+   
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence            357899999999999999999999988732            246899999998888 8999999999988854211   


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                             ..+.|...|.++++.+|..++.+|..+...            ....++..+ .++++.++..++.+|..+-. 
T Consensus       685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAAL-GDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             -------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence                   136788888999999999999999887422            123456666 78899999999999997621 


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950          183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI  262 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l  262 (458)
                                  .+.+..++.++++.++..+..+|+.+.....         ..++.|..+++++++.+|..|+..|+.+
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        1346778999999999999999998864322         2367888999999999999999999888


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHH
Q 043950          263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL  342 (458)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~  342 (458)
                      ....          ...+.+...|.++ ++.||..|+++|+.+...           ..++.|+.+|.+++..||..|++
T Consensus       803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHH
Confidence            5321          1335688889888 999999999999987421           25689999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHH
Q 043950          343 AIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLE  388 (458)
Q Consensus       343 ~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~  388 (458)
                      +|+.+-  .++..         .+.|...+++++..|+..+..+|.
T Consensus       861 aL~~~~--~~~~a---------~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        861 ALTRWP--GDPAA---------RDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHhccC--CCHHH---------HHHHHHHHhCCCHHHHHHHHHHHh
Confidence            999972  23332         556778889999999999998875

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.61  E-value=1.5e-13  Score=117.21  Aligned_cols=195  Identities=20%  Similarity=0.223  Sum_probs=162.5

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc
Q 043950           63 IQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG  142 (458)
Q Consensus        63 ~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  142 (458)
                      ++.+-++.|+.+|+..++|.+++.++.++++.+. .+..++.+.+.|+++.+..++.++++.+++.|++++.|++.+.+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            4556789999999987779999999999999988 689999999999999999999999999999999999999877655


Q ss_pred             hhhHHhhhCCHHHHHHHhccc-ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950          143 CRNLVLREEALIPLLAQLNEH-AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS  221 (458)
Q Consensus       143 ~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  221 (458)
                      . ..+..  .++.+++..... -+..++..++.+|.+++....  ........+|.++.++.+++..++..++++|.|++
T Consensus        88 ~-~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 Q-EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND--YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             H-HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc--hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3 33322  466666665433 467889999999999986632  23445678999999999999999999999999999


Q ss_pred             cCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhc
Q 043950          222 YGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVM  264 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~  264 (458)
                      .++. ....++..++...++.++..+ +.++...++..+.|+..
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            6655 566688889999999999885 67788899999999964

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.57  E-value=2.1e-12  Score=132.13  Aligned_cols=276  Identities=16%  Similarity=0.149  Sum_probs=217.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      ..++.|+..|.+++ +.+|..|+..|+.+..           .+.++.|...|.++++.+|..|+.+|..+....+    
T Consensus       621 ~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        621 PSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             hhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence            46789999999999 9999999999998764           2458999999999999999999999988843221    


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN  225 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  225 (458)
                            ..+.+...+ .++++.++..++.+|..+....           ...+...+.++|+.++..++.+|+.+-.   
T Consensus       685 ------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~---  743 (897)
T PRK13800        685 ------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD---  743 (897)
T ss_pred             ------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC---
Confidence                  124566677 6788999999999988864221           2356778999999999999999987621   


Q ss_pred             hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950          226 DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI  305 (458)
Q Consensus       226 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl  305 (458)
                                 .+.|...+.++++.+|..++.+|+.+.....         ..++.|..++.++ ++.||..|+.+|+.+
T Consensus       744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAEL  802 (897)
T ss_pred             -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHhc
Confidence                       1346678999999999999999998864321         2377888999988 999999999999998


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHH
Q 043950          306 TAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE  385 (458)
Q Consensus       306 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~  385 (458)
                      ....          ..++.+...+.++++.+|..|+.+|+.+-.            ...++.|..+++++++.|+..+..
T Consensus       803 g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCPP----------DDVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHHHH
Confidence            5321          134568888999999999999999998742            123688999999999999999999


Q ss_pred             HHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHH
Q 043950          386 GLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET  444 (458)
Q Consensus       386 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  444 (458)
                      +|..+ ...+                      .....|...+++++++|+..|.+.|+.
T Consensus       861 aL~~~-~~~~----------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        861 ALTRW-PGDP----------------------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHhcc-CCCH----------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99885 1111                      124566778889999999999998863

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.56  E-value=2.6e-12  Score=125.80  Aligned_cols=330  Identities=19%  Similarity=0.190  Sum_probs=236.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      .+++.+++++.+++...+..+--++..+...+ ++ .-.+    +++.+.+=+.+++ +.++..|+++++++..  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~~-~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED-PE-LLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-HH-HHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-hh-HHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            35778888989999999999988888886653 22 1212    5777888888988 8999999999999985  5555


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      ..+     ++.+.+++.++++.+|..|+.++.++....|+.   +... .++.+...+ .++++.++..|+.++..+ ..
T Consensus       113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            544     688999999999999999999999998766553   2222 467777777 888899999999999999 22


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950          183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI  262 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l  262 (458)
                      .+..........++.+..++...++-.+..++.++..++.........   ..+++.+..++.+.++.+...++.++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            211111445667777777778899999999999999988665544321   45778888888888888888898888877


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHH
Q 043950          263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL  342 (458)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~  342 (458)
                      ....+      .-..+++.+..++.++ ++.+|..++..+..++...+....     .....+..+..+++..++..++.
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~  326 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALD  326 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHH
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHH
Confidence            65333      1235688899999977 888999999999999875533222     11222333334778889999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHCCChHHHHhhc-cCCCHHHHHHHHHHHHHHHHhch
Q 043950          343 AIANATVRGTHEQIKYLVREGCIKPLCDLL-LCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       343 ~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      .+..++.   +.....     +++.|...+ +..+++++..++..+..++...+
T Consensus       327 lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~  372 (526)
T PF01602_consen  327 LLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFP  372 (526)
T ss_dssp             HHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred             HHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence            9998875   233333     356666666 34466777777777777665544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.56  E-value=1.1e-12  Score=128.52  Aligned_cols=359  Identities=16%  Similarity=0.174  Sum_probs=250.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .+..+.+-++++++.++-.|++++.++..   .+..+     .+++.+.+++.+++ +.+|..|+.++.++...+++...
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~-----~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAE-----PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHH-----HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhh-----HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence            56778888999999999999999999853   22222     25788899999999 89999999999999886555432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHhh
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l~  180 (458)
                      .   . .++.+.+++.+.++.++..|+.++..+ ...+....     ..++.++..+.   ...++-.+..++.++..++
T Consensus       151 ~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  151 D---E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             G---G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             H---H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence            1   2 589999999999999999999999998 22221100     23444444443   6778888888888888877


Q ss_pred             cCCCCCChhhh--hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950          181 KGKPQPPFDQV--RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT  258 (458)
Q Consensus       181 ~~~~~~~~~~~--~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  258 (458)
                      ...    ....  ..+++.+..++++.++.+...++.++..+.....      .-..+++.+.+++.++++.++..++..
T Consensus       221 ~~~----~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~  290 (526)
T PF01602_consen  221 PME----PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDS  290 (526)
T ss_dssp             SSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred             cCC----hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHH
Confidence            543    2222  5788889999999999999999999998875433      223478999999998888899999999


Q ss_pred             HhHhhcCChhhHHHHHhcCChHHHHHHhc-cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-cCChhh
Q 043950          259 VGNIVMGDDFQTQCIINHGAVPCLLALLI-HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-DAEFDI  336 (458)
Q Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~  336 (458)
                      +..++...+..   +.   .....+..+. ++ +..+|..++..+..++.  +.+...     +++.|...+. ..+.++
T Consensus       291 L~~l~~~~~~~---v~---~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~  356 (526)
T PF01602_consen  291 LSQLAQSNPPA---VF---NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDF  356 (526)
T ss_dssp             HHHHCCHCHHH---HG---THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHH
T ss_pred             HHHhhcccchh---hh---hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhh
Confidence            99998766222   21   2333344555 55 88999999999999974  445444     5667888884 447889


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHh
Q 043950          337 KKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE  416 (458)
Q Consensus       337 ~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (458)
                      +..++..++.++.........      .++.+++++...++.+...+...+.+++...++.+            ...   
T Consensus       357 ~~~~i~~I~~la~~~~~~~~~------~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~------------~~~---  415 (526)
T PF01602_consen  357 RRELIKAIGDLAEKFPPDAEW------YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR------------EKI---  415 (526)
T ss_dssp             HHHHHHHHHHHHHHHGSSHHH------HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH------------HHH---
T ss_pred             hhhHHHHHHHHHhccCchHHH------HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh------------HHH---
Confidence            999999999987643211111      36667777776666666666777777765544321            111   


Q ss_pred             cchHHHHHhh-hcCCChHHHHHHHHHHHHhcCCC
Q 043950          417 DEGFKKIEGL-KSHDNNGIREKAVKILETYWCGR  449 (458)
Q Consensus       417 ~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~  449 (458)
                         ++.+.++ .+-.++++...+.|++..|-+..
T Consensus       416 ---l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~  446 (526)
T PF01602_consen  416 ---LKKLIELLEDISSPEALAAAIWILGEYGELI  446 (526)
T ss_dssp             ---HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred             ---HHHHHHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence               3333333 33466777777788777775433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=5.6e-13  Score=122.35  Aligned_cols=314  Identities=15%  Similarity=0.126  Sum_probs=220.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDH----GAVPIFVKLLASPSDDVREQAVWALGNVAADSP  141 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~----~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  141 (458)
                      .++|.|+.+|.+++ ....+-|..+|.+++.++++..+.-...    -.+|.++++.+++++.+|..|+.++..+....+
T Consensus       128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence            46899999999998 5889999999999999877765542221    357999999999999999999999988775543


Q ss_pred             chhhHHhh-hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950          142 GCRNLVLR-EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL  220 (458)
Q Consensus       142 ~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l  220 (458)
                      ..  .... ...+..+..+. ++.+++++++.|.++..|....+.....-..++++.+....++.|.++...|+.....+
T Consensus       207 qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~  283 (885)
T KOG2023|consen  207 QA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL  283 (885)
T ss_pred             HH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence            31  1111 12344444444 78899999999999999998877777777789999999999999999999999999999


Q ss_pred             ccCChhhHHHHHH--hCcHHHHHHHhCCCC--------------------------------------------------
Q 043950          221 SYGTNDKIQVVIE--AGVCRRLVELLGHPS--------------------------------------------------  248 (458)
Q Consensus       221 ~~~~~~~~~~~~~--~~~i~~L~~ll~~~~--------------------------------------------------  248 (458)
                      ++.+. ....+..  ..++|.|+.-+...+                                                  
T Consensus       284 aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  284 AEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             hcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            86652 2221211  145555554332110                                                  


Q ss_pred             ------ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH-HHHHHcCC
Q 043950          249 ------PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI-QAVIDAGL  321 (458)
Q Consensus       249 ------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~~~  321 (458)
                            +.+|+.++.+|..++..-.+.   +. .-++|.+-+.|.++ +..+|+.+..+++.++.|.-..+ .++-  .+
T Consensus       363 dD~~~dWNLRkCSAAaLDVLanvf~~e---lL-~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eL  435 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLANVFGDE---LL-PILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP--EL  435 (885)
T ss_pred             ccccccccHhhccHHHHHHHHHhhHHH---HH-HHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH--HH
Confidence                  235555555554444322211   11 12466667777777 99999999999999997643322 2222  37


Q ss_pred             hHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHH-HHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950          322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQI-KYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       322 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~  393 (458)
                      +|.|+.+|.+..+-||.-++|.|+.....-..+.. +++..  ++..|.+.+-+.+..|+++++.++..+-+.
T Consensus       436 ip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~  506 (885)
T KOG2023|consen  436 IPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEE  506 (885)
T ss_pred             HHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999988653211111 22222  455566666678889999999888766543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.51  E-value=7e-11  Score=107.56  Aligned_cols=321  Identities=14%  Similarity=0.184  Sum_probs=228.3

Q ss_pred             CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhh-----CCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          109 GAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLRE-----EALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       109 ~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      ..+..++.++.. ..+++.+.++..+..+..+.|.....+.+.     ....+++.++ ..+|..+...++.+++.+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            456777777765 668888999999999888877655555543     4567788877 567888999999999999876


Q ss_pred             CCCCCh-hhhhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC--CccchhhHHHH
Q 043950          183 KPQPPF-DQVRPALPALAQLIHLD-DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP--SPSVLTPALWT  258 (458)
Q Consensus       183 ~~~~~~-~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~  258 (458)
                      .+.... ......++.+...+++. +...+..++.++..+...+..+ ..+.+.++++.|+.+|+..  +..+...++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            533222 12233445566666654 4677777889999998776654 5577788999999999863  44678889999


Q ss_pred             HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCC------HHHHHHHHHcCChHHHHHHhccC
Q 043950          259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN------REQIQAVIDAGLIVPLVNVLQDA  332 (458)
Q Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~------~~~~~~l~~~~~~~~L~~ll~~~  332 (458)
                      ++-++...+ ........++++.++++++.....++-+-+..++.|+...+      ......+++.|+.+ ++..|...
T Consensus       211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~r  288 (429)
T cd00256         211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQR  288 (429)
T ss_pred             HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcC
Confidence            998886444 55556678999999999998878899999999999998732      22344566777665 44545432


Q ss_pred             ---ChhhHHHHHHHH-------HHhhcCC------------------C----HHHHHHHHHCC--ChHHHHhhcc-CCCH
Q 043950          333 ---EFDIKKEAALAI-------ANATVRG------------------T----HEQIKYLVREG--CIKPLCDLLL-CVDP  377 (458)
Q Consensus       333 ---~~~~~~~a~~~L-------~~l~~~~------------------~----~~~~~~l~~~~--~l~~L~~ll~-~~~~  377 (458)
                         |+++....-..-       ..++...                  +    .++...+.+.+  +++.|..+++ +.|+
T Consensus       289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence               555543221111       1111100                  1    12344444443  4678888885 5677


Q ss_pred             HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          378 KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       378 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      .+...|+.=++.+++..+..             +..+.+.|+.+.+..|++|+|++|+..|...++.+.
T Consensus       369 ~~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         369 IILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             ceeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            78888888899999887654             677889999999999999999999999999988763

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.51  E-value=3.3e-10  Score=111.21  Aligned_cols=259  Identities=14%  Similarity=0.086  Sum_probs=179.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      ++.+++++.++|..++......+.+.+... ++..  +   -.++.|.+=+.+++ +.+|..|+++++++-.  ++....
T Consensus        70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela--l---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~  140 (746)
T PTZ00429         70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA--L---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY  140 (746)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH--H---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH
Confidence            555566666677777777766666664432 2211  1   14777888888888 8999999999988766  343333


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC
Q 043950          105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP  184 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~  184 (458)
                      +     ++.+.+.+.+.++.||..|+.++.++...+|+   .+.+.+.++.+.+++ .+.++.+..+|+.+|..+....+
T Consensus       141 l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~  211 (746)
T PTZ00429        141 T-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGS  211 (746)
T ss_pred             H-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCc
Confidence            3     57788888899999999999999999776654   334556778888877 78899999999999999987654


Q ss_pred             CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950          185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM  264 (458)
Q Consensus       185 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~  264 (458)
                      . ........+..+...+..-++-.+..++.++......+...     ...++..+...|++.++.|...|+.++.++..
T Consensus       212 ~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e-----~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        212 E-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES-----AETLLTRVLPRMSHQNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             h-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            3 23445666777777777777778888888886643222211     12577888899999999999999999998875


Q ss_pred             CC-hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH
Q 043950          265 GD-DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR  310 (458)
Q Consensus       265 ~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~  310 (458)
                      .. +....... ..+-+.++.++ ++ +++++..+...+.-++...+
T Consensus       286 ~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P  329 (746)
T PTZ00429        286 RCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP  329 (746)
T ss_pred             cCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence            43 22222221 12335556554 44 66788777777766665443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.51  E-value=6.3e-13  Score=102.33  Aligned_cols=119  Identities=36%  Similarity=0.572  Sum_probs=109.8

Q ss_pred             HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 043950           61 DVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS  140 (458)
Q Consensus        61 ~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  140 (458)
                      .+++.|+++.+++++.+++ ..++..++++|.+++..+++....+++.|+++.++.++.++++.++..++++|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4678899999999999998 899999999999999988999999999999999999999999999999999999999988


Q ss_pred             CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          141 PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       141 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                      +..+..+.+.|.++.++..+ ...+..+++.++|++.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77778888889999999999 66688999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.51  E-value=5.8e-13  Score=102.55  Aligned_cols=118  Identities=32%  Similarity=0.537  Sum_probs=110.5

Q ss_pred             HHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH
Q 043950          231 VIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR  310 (458)
Q Consensus       231 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~  310 (458)
                      +++.|+++.+++++.++++.++..+++++++++...++....+.+.++++.+++++.++ ++.++..++|+++|++.+.+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56789999999999999999999999999999998888888889999999999999998 99999999999999999887


Q ss_pred             HHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          311 EQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       311 ~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                      .....+.+.|+++.+++.+...+.+++..++++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            888888899999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=3.1e-11  Score=114.05  Aligned_cols=342  Identities=15%  Similarity=0.165  Sum_probs=252.1

Q ss_pred             cHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           24 ILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        24 ~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      .+|.|+.+|+.+ +.++...|+++|..++.-- +.....+++.++||.|++-|..-...++.++++.+|..++..   ..
T Consensus       212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~  287 (1051)
T KOG0168|consen  212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HP  287 (1051)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---cc
Confidence            478999999964 6999999999999997665 566778889999999998887766689999999999999984   34


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                      ..+.+.|++.+.+.++.--+..+++.|+.+.+|.|..- ++--..+++  .+|.|..++ ...|....+.++-++..++.
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d  364 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD  364 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence            56778899999999998888999999999999999533 222234444  788888888 66667788889999998887


Q ss_pred             CC-CCCCh---hhhhhhHHHHHHhhcCCC----hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc----
Q 043950          182 GK-PQPPF---DQVRPALPALAQLIHLDD----EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP----  249 (458)
Q Consensus       182 ~~-~~~~~---~~~~~~l~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----  249 (458)
                      .. +...+   ....+++..+.+++.-.+    ..+....++.+..++...+.....+...++...+..+|.....    
T Consensus       365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na  444 (1051)
T KOG0168|consen  365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA  444 (1051)
T ss_pred             hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence            65 22211   222788888888887543    3455667788888888877777777888888888887754211    


Q ss_pred             ----cc-h------hhHHH-----------------------------------------------HHhHhhc-------
Q 043950          250 ----SV-L------TPALW-----------------------------------------------TVGNIVM-------  264 (458)
Q Consensus       250 ----~~-~------~~a~~-----------------------------------------------~l~~l~~-------  264 (458)
                          .+ +      +....                                               +...+..       
T Consensus       445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~  524 (1051)
T KOG0168|consen  445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG  524 (1051)
T ss_pred             ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence                00 0      00000                                               0001110       


Q ss_pred             -------------------CChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHH-cCChH
Q 043950          265 -------------------GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVID-AGLIV  323 (458)
Q Consensus       265 -------------------~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~-~~~~~  323 (458)
                                         ..++..+.++ ..++|.|+++..+..++.||..+..+|..+.. .+.+.+..++. ..+-.
T Consensus       525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS  603 (1051)
T KOG0168|consen  525 TSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS  603 (1051)
T ss_pred             cchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence                               0111122222 24788899999888899999999999999986 67788887775 44556


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950          324 PLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL  373 (458)
Q Consensus       324 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  373 (458)
                      .+-.+|.+.|..+..-|+...--++..-..-+...+.++|++..+-.+..
T Consensus       604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            67778899999998888888888887766677788889998888877776

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.42  E-value=1.1e-10  Score=106.37  Aligned_cols=282  Identities=16%  Similarity=0.144  Sum_probs=203.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +....++.+|+++|.-++..|+..|..+++.. ..........-..+.|...+++++....+..++.++..+.. .+++|
T Consensus       101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R  178 (429)
T cd00256         101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYR  178 (429)
T ss_pred             cchHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHH
Confidence            44677788899999999999999999998764 22222111112445666677665435788889999999998 68899


Q ss_pred             HHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          103 NVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      ..+.+.++++.|..+|+.  .+.+++..++.+++-++.+.+ ........+.++.++..+..+..+.+.+.++.++.|+.
T Consensus       179 ~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll  257 (429)
T cd00256         179 FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI  257 (429)
T ss_pred             HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            999888899999999976  356889999999999987765 34555667899999999988888899999999999999


Q ss_pred             cCCCCC------ChhhhhhhHHHHHHhhcC---CChHHHHHHHHHH-------HHhccCCh-------------------
Q 043950          181 KGKPQP------PFDQVRPALPALAQLIHL---DDEEVLSDACWTL-------SYLSYGTN-------------------  225 (458)
Q Consensus       181 ~~~~~~------~~~~~~~~l~~l~~ll~~---~~~~~~~~~~~~l-------~~l~~~~~-------------------  225 (458)
                      ......      ...++...++.++..|..   .|+++.+..-..-       ..++..+.                   
T Consensus       258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se  337 (429)
T cd00256         258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE  337 (429)
T ss_pred             hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc
Confidence            854111      112233344555555542   3555543322111       11111000                   


Q ss_pred             ----hhHHHHHHh--CcHHHHHHHhC-CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHH
Q 043950          226 ----DKIQVVIEA--GVCRRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVA  298 (458)
Q Consensus       226 ----~~~~~~~~~--~~i~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a  298 (458)
                          ++...+.+.  .++..|+++|. +.++.+..-||.=++.+++..|.....+-+.|+=..+++++.++ +++||.+|
T Consensus       338 ~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eA  416 (429)
T cd00256         338 KFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEA  416 (429)
T ss_pred             hHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHH
Confidence                011122222  36888999995 45777888899999999999988888777899999999999999 99999999


Q ss_pred             HHHHHHhhcC
Q 043950          299 CWTISNITAG  308 (458)
Q Consensus       299 ~~~l~nl~~~  308 (458)
                      ..++.-+..+
T Consensus       417 L~avQklm~~  426 (429)
T cd00256         417 LLAVQKLMVH  426 (429)
T ss_pred             HHHHHHHHHh
Confidence            9999887654

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.40  E-value=4.3e-09  Score=103.48  Aligned_cols=294  Identities=15%  Similarity=0.067  Sum_probs=202.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      |-+..+-+.|.+.+...+..+++.+....... .+..      .+.+..++++.+++ .+++.-.-..+.+++...++..
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence            34566777888888888888887666554433 2322      25677788888888 8999999889999988655543


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      -.     .++.+.+=+.++++.+|..|+++++++...  ...+     -.+.++.+.+ .+.++.+++.|+.++.++...
T Consensus       104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e-----~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLE-----YTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHH-----HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence            22     267888888899999999999999998432  1111     1345566666 788999999999999999876


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950          183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI  262 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l  262 (458)
                      .+.  .....+.++.+..++.+.|+.++..++.++..+....+....  ...+.+..++..+..-++..+...+.+|...
T Consensus       171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            543  223356788899999999999999999999999865543332  2345667777777766666666666666443


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHH
Q 043950          263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAA  341 (458)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~  341 (458)
                         .+......  ..++..+...|++. ++.|.-+|+.++.++... +++....... .+-+.++.++ +.+++++--++
T Consensus       247 ---~P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaL  318 (746)
T PTZ00429        247 ---RPSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVC  318 (746)
T ss_pred             ---CCCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHH
Confidence               22221211  25688888889998 899999999999988753 2333332222 1334555553 44667777777


Q ss_pred             HHHHHhhc
Q 043950          342 LAIANATV  349 (458)
Q Consensus       342 ~~L~~l~~  349 (458)
                      ..+.-++.
T Consensus       319 r~I~~i~~  326 (746)
T PTZ00429        319 KNIHALLV  326 (746)
T ss_pred             HHHHHHHH
Confidence            66655554

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=3.2e-10  Score=106.30  Aligned_cols=367  Identities=16%  Similarity=0.168  Sum_probs=239.7

Q ss_pred             cHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           24 ILPAMVAGVWS--DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        24 ~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      .+..++....+  ++..+|+.|+.+|.+-+...+.....+.-..-+....++.-++++ .+++..|..||..+..-..+.
T Consensus       173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~  251 (859)
T KOG1241|consen  173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEF  251 (859)
T ss_pred             HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence            35555666553  468899999999998765542222223333334556666767777 899999999999998866666


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc----------------hhhHH--hhhCCHHHHHHHhcc-
Q 043950          102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG----------------CRNLV--LREEALIPLLAQLNE-  162 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------------~~~~~--~~~~~l~~l~~~l~~-  162 (458)
                      ....+....+..-+.-++++++++.-+++...+++|...-+                .....  .-.+++|.|++.|.+ 
T Consensus       252 m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kq  331 (859)
T KOG1241|consen  252 MEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQ  331 (859)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhC
Confidence            66666667778888888899999999999999999853211                00000  012467778888753 


Q ss_pred             cc-----cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcH
Q 043950          163 HA-----KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVC  237 (458)
Q Consensus       163 ~~-----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i  237 (458)
                      ++     +-..-..|..||.-++....   ...+..++|.+-+-++++|+.-++.+..+++.+..+.....-.-+..+.+
T Consensus       332 de~~d~DdWnp~kAAg~CL~l~A~~~~---D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qal  408 (859)
T KOG1241|consen  332 DEDDDDDDWNPAKAAGVCLMLFAQCVG---DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQAL  408 (859)
T ss_pred             CCCcccccCcHHHHHHHHHHHHHHHhc---ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhh
Confidence            11     22344555555555544321   22345788888889999999999999999999997766544444556789


Q ss_pred             HHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHH-HHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH
Q 043950          238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQC-IINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV  316 (458)
Q Consensus       238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  316 (458)
                      +.++.++.++.-.++..+.|+++.++...++.+.. ......++.++.-|.+  .|.+...+||++.+++.+.++....-
T Consensus       409 p~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~  486 (859)
T KOG1241|consen  409 PSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSN  486 (859)
T ss_pred             HHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999999888889999999999999877654332 2234567777777764  57899999999999995322211110


Q ss_pred             -----HH---cCChHHHHHHhcc---CChhhHHHHHHHHHHhhcCCCHHHHHHHHHC--CChHHHHhhc-----cCCC--
Q 043950          317 -----ID---AGLIVPLVNVLQD---AEFDIKKEAALAIANATVRGTHEQIKYLVRE--GCIKPLCDLL-----LCVD--  376 (458)
Q Consensus       317 -----~~---~~~~~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~--~~l~~L~~ll-----~~~~--  376 (458)
                           ..   ..++..|+.....   .+...|..|..+|+.++..+..+....+.+.  -.+..|-..+     ...+  
T Consensus       487 ~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~  566 (859)
T KOG1241|consen  487 GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRA  566 (859)
T ss_pred             CCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence                 00   0123333333332   3578999999999999998766554443221  1122222222     2222  


Q ss_pred             --HHHHHHHHHHHHHHHHhchh
Q 043950          377 --PKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       377 --~~v~~~~~~~l~~l~~~~~~  396 (458)
                        .+++...+..|..+.+....
T Consensus       567 q~~eLQs~Lc~~Lq~i~rk~~~  588 (859)
T KOG1241|consen  567 QLNELQSLLCNTLQSIIRKVGS  588 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHccc
Confidence              24555566666666665444

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.36  E-value=4.4e-10  Score=104.99  Aligned_cols=393  Identities=13%  Similarity=0.129  Sum_probs=248.4

Q ss_pred             hHhhcc---HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHH
Q 043950           19 QTKLEI---LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY-PQLQYEAAWALTNI   94 (458)
Q Consensus        19 ~~~~~~---i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~i~~~a~~~L~~l   94 (458)
                      ..+.|.   +..++.-++++.+..+..++....++...-+.....+-.+.-.+..++..++.++. ..+-.....++.+-
T Consensus       709 a~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~  788 (1172)
T KOG0213|consen  709 AAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNA  788 (1172)
T ss_pred             HHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            344443   66667778888888888888888877665433333334444556666666665542 12222233333322


Q ss_pred             cCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh--HHhhhCCHHHHHHHhcccccHHHHHHH
Q 043950           95 ASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN--LVLREEALIPLLAQLNEHAKLSMLRIA  172 (458)
Q Consensus        95 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~a  172 (458)
                      ...    |-.-.-..++..++..|++.++.+|++|+..++.++.--..+.+  .+...|.  .|.+.+ ....+++.-..
T Consensus       789 lg~----r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsI  861 (1172)
T KOG0213|consen  789 LGG----RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSI  861 (1172)
T ss_pred             Hhh----ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHH
Confidence            221    10111113456677788999999999999999999743222211  2222232  244555 67789999988


Q ss_pred             HHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccc
Q 043950          173 TWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSV  251 (458)
Q Consensus       173 ~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~  251 (458)
                      +.++..++... -.....-..+++|.|...|++....++++.+..++.++...++....-.-..+.--|+.+|+..+.++
T Consensus       862 LgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~i  941 (1172)
T KOG0213|consen  862 LGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEI  941 (1172)
T ss_pred             HHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888777653 22334445899999999999999999999999999999777664432222345556778888888899


Q ss_pred             hhhHHHHHhHhhcCC--hhhHHHHHh-----------------------c---CChHHHHHHhccCChhhHHHHHHHHHH
Q 043950          252 LTPALWTVGNIVMGD--DFQTQCIIN-----------------------H---GAVPCLLALLIHNHKKSIKKVACWTIS  303 (458)
Q Consensus       252 ~~~a~~~l~~l~~~~--~~~~~~~~~-----------------------~---~~~~~l~~ll~~~~~~~v~~~a~~~l~  303 (458)
                      |++|..+++.++..-  .+....+++                       .   .++|.|+.=...+ +..|+.-...+++
T Consensus       942 RRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkals 1020 (1172)
T KOG0213|consen  942 RRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALS 1020 (1172)
T ss_pred             HHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHH
Confidence            999999998887531  111111111                       1   2455555555556 7778888888888


Q ss_pred             HhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh-------ccCC
Q 043950          304 NITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL-------LLCV  375 (458)
Q Consensus       304 nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l-------l~~~  375 (458)
                      .+..- .....+++.  .+.|.|.+.|.+.|.--|..|..++.+++.+..        -.|..+.++.+       +-.+
T Consensus      1021 f~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~ 1090 (1172)
T KOG0213|consen 1021 FMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILET 1090 (1172)
T ss_pred             HHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCC
Confidence            77641 112222222  378888999999999999999999999988632        12223333333       3356


Q ss_pred             CHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCC
Q 043950          376 DPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGR  449 (458)
Q Consensus       376 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  449 (458)
                      .|.++.....++..+-..                    +.-.-.++.+.+=+-|+...|++..-.+++.++.+.
T Consensus      1091 sPhviqa~~e~~eg~r~~--------------------Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1091 SPHVIQAFDEAMEGLRVA--------------------LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred             ChHHHHHHHHHHHHHHHH--------------------hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcc
Confidence            777777766666555332                    212222455566678888889888877777765543

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=4.2e-10  Score=105.53  Aligned_cols=358  Identities=16%  Similarity=0.158  Sum_probs=238.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      +|-+-+.++++|..-+..|+.++..+..+. .+....-.-.+++|.++.++.++. -.++..++|+++.++...++....
T Consensus       366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~n  443 (859)
T KOG1241|consen  366 LPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAIIN  443 (859)
T ss_pred             HHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhccc
Confidence            444445777999999999999999998876 344434444578999999999877 688999999999999977754432


Q ss_pred             H-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch-----hhHHhhhCCHHHHHHHhc------ccccHHHHHHH
Q 043950          105 V-IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC-----RNLVLREEALIPLLAQLN------EHAKLSMLRIA  172 (458)
Q Consensus       105 ~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~l~~l~~~l~------~~~~~~~~~~a  172 (458)
                      - ...+.++.++.-|. ..|.+..+++|++.+|+...++.     ...... ...+.++..|.      +..+..++..+
T Consensus       444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA  521 (859)
T KOG1241|consen  444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA  521 (859)
T ss_pred             HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence            2 22344556666554 55889999999999998422111     000111 23444554443      22445688899


Q ss_pred             HHHHHHhhcCCCCCChhhhhhhHHHHHH---------hhcCCC----hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHH
Q 043950          173 TWTLSKLCKGKPQPPFDQVRPALPALAQ---------LIHLDD----EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRR  239 (458)
Q Consensus       173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~---------ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~  239 (458)
                      ..+|..+....+........+....+..         .+...|    .+++...+.+|..+............+ .++..
T Consensus       522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~l  600 (859)
T KOG1241|consen  522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMGL  600 (859)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHHH
Confidence            9999999988765555555555444443         222222    355666666776666433333333333 47788


Q ss_pred             HHHHhCC-CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043950          240 LVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID  318 (458)
Q Consensus       240 L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~  318 (458)
                      +++++.+ .+.-+.+.|+.+++.++..-......-. ..+.|.|..-|++..+..|...|...++.++..-...+....+
T Consensus       601 flri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d  679 (859)
T KOG1241|consen  601 FLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCD  679 (859)
T ss_pred             HHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            8888888 4556778899988888764433332222 3578888888866558899999999999999755455555554


Q ss_pred             cCChHHHHHHhccC--ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-------CC--------CHHHHH
Q 043950          319 AGLIVPLVNVLQDA--EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-------CV--------DPKIVT  381 (458)
Q Consensus       319 ~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-------~~--------~~~v~~  381 (458)
                       +++..|+..|+++  +..++-..+.+++.++..-..++..++      +.++.+++       .+        -.++++
T Consensus       680 -~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl------~~vm~llq~as~~~~d~~~~~~~dYvd~LRe  752 (859)
T KOG1241|consen  680 -ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYL------EMVMPLLQQASSVQTDPADDSMVDYVDELRE  752 (859)
T ss_pred             -HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHhccCCCCcccHHHHHHHHHH
Confidence             5888999999887  678999999999999886666666663      22333332       11        135788


Q ss_pred             HHHHHHHHHHHhch
Q 043950          382 VCLEGLENILKVGE  395 (458)
Q Consensus       382 ~~~~~l~~l~~~~~  395 (458)
                      .++.+...++....
T Consensus       753 ~~leay~gi~qglk  766 (859)
T KOG1241|consen  753 GILEAYTGIIQGLK  766 (859)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88888877776544

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=9.6e-09  Score=96.96  Aligned_cols=329  Identities=17%  Similarity=0.183  Sum_probs=244.1

Q ss_pred             hhHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHc
Q 043950           18 LQTKLEILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-DYPQLQYEAAWALTNIA   95 (458)
Q Consensus        18 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~   95 (458)
                      .....++|+.|+..+.+. -.+-|+.|++.|..++.     .-+..+...+++.|++.|+.. .++++...++.++.++.
T Consensus        17 ~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr-----kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~   91 (970)
T KOG0946|consen   17 QQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR-----KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILT   91 (970)
T ss_pred             cccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH-----HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            455567899999988854 58889999999998843     234455566789999999764 34899999999999988


Q ss_pred             CCCh------hh----------HHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-chhhHHhh-hCCHHHH
Q 043950           96 SGTS------MN----------TNVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP-GCRNLVLR-EEALIPL  156 (458)
Q Consensus        96 ~~~~------~~----------~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~-~~~l~~l  156 (458)
                      .+.+      +.          .+.++ ..+.|..++..+...+-.||..++..+.++....| +.++.+.. .-++..+
T Consensus        92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l  171 (970)
T KOG0946|consen   92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL  171 (970)
T ss_pred             hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence            7442      11          12233 45789999999999999999999999999987664 45555543 3568889


Q ss_pred             HHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhh-hhhHHHHHHhhcCC---C-hHHHHHHHHHHHHhccCChhhHHHH
Q 043950          157 LAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV-RPALPALAQLIHLD---D-EEVLSDACWTLSYLSYGTNDKIQVV  231 (458)
Q Consensus       157 ~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~---~-~~~~~~~~~~l~~l~~~~~~~~~~~  231 (458)
                      +..+ .+..+.++..++..|..++...+..++... ..++..|..++..+   | .-+.+.++..+.|+..++..+.+.+
T Consensus       172 mdlL-~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F  250 (970)
T KOG0946|consen  172 MDLL-RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF  250 (970)
T ss_pred             HHHH-hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence            9999 566667899999999999998876665544 88899999999743   3 4678899999999999888889999


Q ss_pred             HHhCcHHHHHHHhCCC---C-----ccc-----hhhHHHHHhHhhcCC------hhhHHHHHhcCChHHHHHHhccC-Ch
Q 043950          232 IEAGVCRRLVELLGHP---S-----PSV-----LTPALWTVGNIVMGD------DFQTQCIINHGAVPCLLALLIHN-HK  291 (458)
Q Consensus       232 ~~~~~i~~L~~ll~~~---~-----~~~-----~~~a~~~l~~l~~~~------~~~~~~~~~~~~~~~l~~ll~~~-~~  291 (458)
                      .+.+.++.|.++|...   +     |.-     ...++.++..+..-.      ......+...+++..|..++-++ -.
T Consensus       251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp  330 (970)
T KOG0946|consen  251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP  330 (970)
T ss_pred             hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence            9999999999988652   2     111     123455555554321      22234566889999999999877 35


Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHcC----------ChHHHHHHhcc-CChhhHHHHHHHHHHhhcCCC
Q 043950          292 KSIKKVACWTISNITAGNREQIQAVIDAG----------LIVPLVNVLQD-AEFDIKKEAALAIANATVRGT  352 (458)
Q Consensus       292 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~----------~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~  352 (458)
                      .+++.++..+++++.+++..+...+.+..          ++-.++.+..+ ..+..|..+.+++..+.....
T Consensus       331 ~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~  402 (970)
T KOG0946|consen  331 ADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND  402 (970)
T ss_pred             HhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence            58999999999999998877777776421          22223333333 367899999999998887544

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.24  E-value=6.2e-08  Score=85.47  Aligned_cols=320  Identities=13%  Similarity=0.158  Sum_probs=214.4

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHh------hhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          111 VPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVL------REEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       111 i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                      +..++.++.. ..++..+.++..+..+-..+......+.      ..-.-...+.++ ...+.-+.....++++.++...
T Consensus        67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~g  145 (442)
T KOG2759|consen   67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACFG  145 (442)
T ss_pred             HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHhc
Confidence            5566666655 4455666666666665544433222211      112355677777 6667777777889999888765


Q ss_pred             CCCChh-hhhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHH
Q 043950          184 PQPPFD-QVRPALPALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTV  259 (458)
Q Consensus       184 ~~~~~~-~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l  259 (458)
                      +..... ...-....+...+++ .++..+..+.+||..+...+..+.. ++...++..++..+.+  .+-.++...+.++
T Consensus       146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~-~v~adg~~~l~~~l~s~~~~~QlQYqsifci  224 (442)
T KOG2759|consen  146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA-FVIADGVSLLIRILASTKCGFQLQYQSIFCI  224 (442)
T ss_pred             cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe-eeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence            332222 223334445556665 6677888888999999877775555 5666777888888843  4567888899999


Q ss_pred             hHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH------HHHHHHHHcCChHHHHHHhccC-
Q 043950          260 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR------EQIQAVIDAGLIVPLVNVLQDA-  332 (458)
Q Consensus       260 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~------~~~~~l~~~~~~~~L~~ll~~~-  332 (458)
                      +-|+. ++...+.+...+.++.+.++++.....+|-+-.+.++.|++...+      +....++..++.+.+-.+-... 
T Consensus       225 WlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky  303 (442)
T KOG2759|consen  225 WLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY  303 (442)
T ss_pred             HHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence            98876 555557677789999999999988678999999999999997542      3445566666666555444332 


Q ss_pred             -ChhhHHHHHHHHHH-------hhcCC--------------C--------HHHHHHHHHC--CChHHHHhhccCC-CHHH
Q 043950          333 -EFDIKKEAALAIAN-------ATVRG--------------T--------HEQIKYLVRE--GCIKPLCDLLLCV-DPKI  379 (458)
Q Consensus       333 -~~~~~~~a~~~L~~-------l~~~~--------------~--------~~~~~~l~~~--~~l~~L~~ll~~~-~~~v  379 (458)
                       |+++....-..-..       ++...              +        .+++..+-++  .+++.|+.+|+.. ||.+
T Consensus       304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i  383 (442)
T KOG2759|consen  304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII  383 (442)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence             55544322211111       11110              0        1233344333  2578888988865 4777


Q ss_pred             HHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          380 VTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       380 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      ...|+.=++.+.+..+..             ...+...||.+.+.+|++|+|++|+..|...++++.
T Consensus       384 L~VAc~DIge~Vr~yP~g-------------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  384 LCVACHDIGEYVRHYPEG-------------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM  437 (442)
T ss_pred             eehhhhhHHHHHHhCchH-------------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            778888888888887764             778889999999999999999999999988888764

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.24  E-value=1.7e-09  Score=95.14  Aligned_cols=280  Identities=15%  Similarity=0.110  Sum_probs=201.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      .+..+.+|..++.-+...+.+.+..+++.. ......-...-....|-..++++...+-...|++||..+.. -++.|..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence            567888999999999888999999998765 22211100001123344455553436778889999999998 5889999


Q ss_pred             HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          105 VIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      ++..+++..++..+.+  .+-.++.+.+.+++-++.+.... +.+...+.++.+...+..+..+.+.+-++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9988889999998833  56789999999999997766554 56677788999999998888889999999999999988


Q ss_pred             CCCCCh------hhhhhhHHHHHHhhcC---CChHHHHHHHHHHHH-------hccCChh--------------------
Q 043950          183 KPQPPF------DQVRPALPALAQLIHL---DDEEVLSDACWTLSY-------LSYGTND--------------------  226 (458)
Q Consensus       183 ~~~~~~------~~~~~~l~~l~~ll~~---~~~~~~~~~~~~l~~-------l~~~~~~--------------------  226 (458)
                      .+....      .+...-++..++.|..   .|+++....-..-..       +++.+..                    
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            643322      2234444555555542   355444333222111       1111110                    


Q ss_pred             ---hHHHHHH--hCcHHHHHHHhCCCC-ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHH
Q 043950          227 ---KIQVVIE--AGVCRRLVELLGHPS-PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACW  300 (458)
Q Consensus       227 ---~~~~~~~--~~~i~~L~~ll~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~  300 (458)
                         +...+-+  ..++..|+++|+.++ +.+..-||.=++...+..|+....+.+.|+=+.+++++.++ |++||.+|..
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl  431 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL  431 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence               1111111  247899999999864 77888899999999999999988888999999999999999 9999999999


Q ss_pred             HHHHhhcC
Q 043950          301 TISNITAG  308 (458)
Q Consensus       301 ~l~nl~~~  308 (458)
                      ++.-+..+
T Consensus       432 avQ~lm~~  439 (442)
T KOG2759|consen  432 AVQKLMVH  439 (442)
T ss_pred             HHHHHHhh
Confidence            98877654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=6.7e-08  Score=91.47  Aligned_cols=326  Identities=15%  Similarity=0.165  Sum_probs=238.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCC--
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSP--  141 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~--  141 (458)
                      ..|+.|+.-+.+....+-|..|++.|..++.   .+|..+...| ++.|++.|+.  .++++...++.++.++....+  
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            4689999988888778899999999999987   6777777666 8999999986  678999999999999986542  


Q ss_pred             ----chh----------h-HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhh---hhhhHHHHHHhhc
Q 043950          142 ----GCR----------N-LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ---VRPALPALAQLIH  203 (458)
Q Consensus       142 ----~~~----------~-~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~l~~l~~ll~  203 (458)
                          ..+          + .+...+.+..++..+ ...|-.++..++..+.++.+..|..-...   ...++..++.++.
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                111          1 123345566666666 66778899999999999988764332222   2778899999999


Q ss_pred             CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC----CccchhhHHHHHhHhhcCChhhHHHHHhcCCh
Q 043950          204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP----SPSVLTPALWTVGNIVMGDDFQTQCIINHGAV  279 (458)
Q Consensus       204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~  279 (458)
                      +.-..+|..++..|..++..++...+.+.=.+++..|+.++...    ..-|...|+..+.||...+..+...+.+.+.+
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            99999999999999999988886666555568899999999863    23477889999999999998888888899999


Q ss_pred             HHHHHHhccCC--h--------hhH--HHHHHHHHHHhhc-CCH----HHH-HHHHHcCChHHHHHHhccC--ChhhHHH
Q 043950          280 PCLLALLIHNH--K--------KSI--KKVACWTISNITA-GNR----EQI-QAVIDAGLIVPLVNVLQDA--EFDIKKE  339 (458)
Q Consensus       280 ~~l~~ll~~~~--~--------~~v--~~~a~~~l~nl~~-~~~----~~~-~~l~~~~~~~~L~~ll~~~--~~~~~~~  339 (458)
                      |.|.++|....  +        .+|  ...+..++..++. +++    ... ..+...+++..|+.++.++  ..+++..
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte  336 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE  336 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence            99998885321  1        111  1345566666665 222    222 3456789999999998876  5789999


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHCC----------ChHHHHhhccC-CCHHHHHHHHHHHHHHHHhchhh
Q 043950          340 AALAIANATVRGTHEQIKYLVREG----------CIKPLCDLLLC-VDPKIVTVCLEGLENILKVGEAE  397 (458)
Q Consensus       340 a~~~L~~l~~~~~~~~~~~l~~~~----------~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~  397 (458)
                      ++.++++.+.++. .....+.+..          .+-.+..+..+ .....|..++.++..++-.....
T Consensus       337 siitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  337 SIITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            9999999998653 3333333321          12223333333 34567888888888887665554

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=5.4e-09  Score=90.77  Aligned_cols=191  Identities=19%  Similarity=0.197  Sum_probs=159.5

Q ss_pred             CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHH
Q 043950          204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL  283 (458)
Q Consensus       204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~  283 (458)
                      +.+.+-++.++.-|..++..-+ ....++..|+...++..+++++..+|+.|+++++..+..+|.....+++.|+++.|+
T Consensus        94 s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            3456777778888877774443 566688999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043950          284 ALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD--AEFDIKKEAALAIANATVRGTHEQIKYLVR  361 (458)
Q Consensus       284 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~  361 (458)
                      ..+.++.+..+|..|.++++.+.++++.....+...+....|.+++++  .+..++..++..+..++... ......+..
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~  251 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASS  251 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHH
Confidence            999988667889999999999999988888888888889999999998  57788899999999998753 233345566


Q ss_pred             CCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950          362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       362 ~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      .++...+..+...-+.++...++.++.........
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~  286 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLSELST  286 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence            77777788888888888888888887777654443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.20  E-value=3.1e-09  Score=97.50  Aligned_cols=313  Identities=15%  Similarity=0.141  Sum_probs=204.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh--hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC-
Q 043950          109 GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR--NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ-  185 (458)
Q Consensus       109 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-  185 (458)
                      -++..++.+|++..+.+|..|+...+.++.--..|.  ..+...|.  .|.+.+ ...++++....+.+++.+.+.... 
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence            356778889999999999999999988863222211  12222232  234444 567888888888888877665422 


Q ss_pred             CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC
Q 043950          186 PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG  265 (458)
Q Consensus       186 ~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~  265 (458)
                      ....-..+++|.+.+.|++....+....+..++.++...++.+..-.-..+.--|+..|++.+.++|++|..+++.++..
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            22334589999999999999999999999999999987776543222234555677888888899999999888888753


Q ss_pred             C-h-hhHHHHHh-----------------------c---CChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHH
Q 043950          266 D-D-FQTQCIIN-----------------------H---GAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAV  316 (458)
Q Consensus       266 ~-~-~~~~~~~~-----------------------~---~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l  316 (458)
                      - + +....+.+                       .   .++|.++.=...+ +..|+.-...+++.+.. ......+++
T Consensus       761 iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYv  839 (975)
T COG5181         761 IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYV  839 (975)
T ss_pred             cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            2 1 11111110                       1   2344444444455 66777777777777764 111223333


Q ss_pred             HHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHH-HHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950          317 IDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQ-IKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       317 ~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      .  .+.|.|-+.+.+.|+--+..|...+.+++.++.--. ...++.  ++..|...+-.+.|.+.......+..+...-.
T Consensus       840 y--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg  915 (975)
T COG5181         840 Y--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQSFDEGMESFATVLG  915 (975)
T ss_pred             H--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHHHHHHHHHHHHHHhc
Confidence            3  377888889999999999999999999988752110 111111  23334444446778887776666665543322


Q ss_pred             hhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCC
Q 043950          396 AEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGR  449 (458)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  449 (458)
                                          ..-.++.+++=+-|++..|+++.-...+.++..+
T Consensus       916 --------------------~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~  949 (975)
T COG5181         916 --------------------SGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFD  949 (975)
T ss_pred             --------------------cHHHHHHHHHhccCchHHHHHHHHHHHhhhhhcc
Confidence                                1112566777788999999998888877765543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=3e-09  Score=92.30  Aligned_cols=187  Identities=17%  Similarity=0.176  Sum_probs=156.1

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH
Q 043950          163 HAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE  242 (458)
Q Consensus       163 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~  242 (458)
                      +.+.+-+..++.-|..++.+-.+.......+++..+..++++.+..++..|+++++.++++++...+.+.+.|+++.|+.
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            44566777788888888877655555555677777777999999999999999999999999999999999999999999


Q ss_pred             HhCCC-CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 043950          243 LLGHP-SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVIDAG  320 (458)
Q Consensus       243 ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~  320 (458)
                      .+.++ +..++..|+++++.+.+.++.....+...+++..|.+.++++ .+...++.++..++.+...........-..+
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~  253 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG  253 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence            99875 456779999999999999999999999999999999999984 2778889999999999975545555444566


Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                      +-..+..+....+.+++..++.++..+..
T Consensus       254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  254 FQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            77777777788899999999999888865

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=6.3e-07  Score=84.24  Aligned_cols=217  Identities=16%  Similarity=0.144  Sum_probs=157.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      .+.++.+|++.-+.++..|+..+.++...- ++..+     ..+|.|.+-|.+++ +.++..|+.+++.++..+|.+-- 
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence            567888899999999999998888875542 33333     35899999999999 89999999999999998776543 


Q ss_pred             HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH--Hhhc
Q 043950          105 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS--KLCK  181 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~--~l~~  181 (458)
                          ..-|.+.+++.+ .+.=+--..+..+++|+--.|....     ..++++..++....-..+...+..++.  +++.
T Consensus       218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                235788888765 3333344467788888766665433     367889888843222334444433332  2222


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950          182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN  261 (458)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~  261 (458)
                      + .........-+++.|-.++.+.|+..+.-++-+++.+....+...+.     .-+.++++|.+.++++|..|+..+.-
T Consensus       289 g-~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~g  362 (877)
T KOG1059|consen  289 G-MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYG  362 (877)
T ss_pred             C-CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHH
Confidence            2 12344556788899999999999999999999999999776655442     24778999999999999999999877


Q ss_pred             hhc
Q 043950          262 IVM  264 (458)
Q Consensus       262 l~~  264 (458)
                      +..
T Consensus       363 mVs  365 (877)
T KOG1059|consen  363 MVS  365 (877)
T ss_pred             Hhh
Confidence            764

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.15  E-value=3e-09  Score=95.77  Aligned_cols=226  Identities=20%  Similarity=0.274  Sum_probs=158.4

Q ss_pred             hHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCchhhHHhh------hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          111 VPIFVKLLA--SPSDDVREQAVWALGNVAADSPGCRNLVLR------EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       111 i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      ...++.+++  +.++++.+.++..+..+..+++...+.+..      .....++++++ ..+|..+...++..+..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            455555554  368899999999999999988876666554      22578888866 677999999999999999988


Q ss_pred             CCCCChhhhhhhHHHHHHhhc----CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh-----CC--CCccc
Q 043950          183 KPQPPFDQVRPALPALAQLIH----LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL-----GH--PSPSV  251 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~~~~  251 (458)
                      .+........+.++.+...+.    +++.+.+..++.++.++..... ....+.+.++++.+..++     .+  .+..+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            766555544566666666655    4566778999999999985544 556688899999999999     22  34567


Q ss_pred             hhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH-HHHHHHHcCChHHHHHHhc
Q 043950          252 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE-QIQAVIDAGLIVPLVNVLQ  330 (458)
Q Consensus       252 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~~L~~ll~  330 (458)
                      ...++.+++-++. +++....+.+.++++.+.++++.....+|-+-+..++.|++...+. ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            7889999998875 6777788888889999999999887889999999999999974433 6777778777765555544


Q ss_pred             c--CChhhHHH
Q 043950          331 D--AEFDIKKE  339 (458)
Q Consensus       331 ~--~~~~~~~~  339 (458)
                      .  .|+++...
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            3  26666543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=3e-08  Score=93.98  Aligned_cols=342  Identities=17%  Similarity=0.157  Sum_probs=235.5

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +.+|.++++....|.+.....-..+.+.+... ++.     ..+.++.+++=..+++ +.+|..|++.++.+--+  ...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~-P~~-----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~--~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK-PDL-----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRVD--KIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccC-chH-----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEeeh--HHH
Confidence            45677777777777777777767777776653 111     2256888888888888 89999999888876652  222


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      .     .....+...+++.++.+|..+..+..++-..++   +.+...|.++.|-.++ .+.++.+..+|+.++..+...
T Consensus       120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            2     236889999999999999999999999866554   3566778888888888 688899999999999999987


Q ss_pred             CCC-CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950          183 KPQ-PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN  261 (458)
Q Consensus       183 ~~~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~  261 (458)
                      .++ .........+..++..+..-+.--+..++.++.+-...++...+     .++..+...+.+.+..+...+..++.+
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            654 33344456666666666655666666677777666544432222     367888899999999999999999988


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHH-------------------------H
Q 043950          262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA-------------------------V  316 (458)
Q Consensus       262 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~-------------------------l  316 (458)
                      +....+.... .+-..+-++++.++.+. . .+...|..-+.-+..+.++....                         +
T Consensus       266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            8765555323 33345677777777766 3 45554444444333333331110                         0


Q ss_pred             HH-c---CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 043950          317 ID-A---GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILK  392 (458)
Q Consensus       317 ~~-~---~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~  392 (458)
                      .. .   .++..+......-|.+....+++|+++++...+..       ++.++.|.++++...+.+...+...+..+++
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            00 0   13333444444558888999999999998743211       6789999999998877888888888998888


Q ss_pred             hchhh
Q 043950          393 VGEAE  397 (458)
Q Consensus       393 ~~~~~  397 (458)
                      +-++.
T Consensus       416 kyP~~  420 (734)
T KOG1061|consen  416 KYPNK  420 (734)
T ss_pred             cCCCc
Confidence            76654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=1.4e-07  Score=89.61  Aligned_cols=292  Identities=16%  Similarity=0.114  Sum_probs=179.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950           27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI  106 (458)
Q Consensus        27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  106 (458)
                      .+.+-|++.+.-++-.|+.+|+++++.   +..+     .+.|..-+++++.+ +-+|..|+.|...+....|+....+ 
T Consensus       111 slknDL~s~nq~vVglAL~alg~i~s~---Emar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f-  180 (866)
T KOG1062|consen  111 SLKNDLNSSNQYVVGLALCALGNICSP---EMAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF-  180 (866)
T ss_pred             HHHhhccCCCeeehHHHHHHhhccCCH---HHhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh-
Confidence            334455566666777777777777543   2222     35666677777776 7777777777777777656554433 


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc--------------cccHHHHHHH
Q 043950          107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--------------HAKLSMLRIA  172 (458)
Q Consensus       107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------------~~~~~~~~~a  172 (458)
                          ++....+|.+.+..|--.++..+..+|..+++.-....+  .++.++..|++              -++|-++..+
T Consensus       181 ----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i  254 (866)
T KOG1062|consen  181 ----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI  254 (866)
T ss_pred             ----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence                455566666655555555555666666554432222222  34444444421              1355666666


Q ss_pred             HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc
Q 043950          173 TWTLSKLCKGKPQPPFDQVRPALPALAQLIHLD---DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP  249 (458)
Q Consensus       173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  249 (458)
                      +..|+-|-.+.+ .....+..++..+..-..++   ...+...+..++..+-..+.-+      .-.+..|-++|.+.+.
T Consensus       255 LrlLriLGq~d~-daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr------vlainiLgkFL~n~d~  327 (866)
T KOG1062|consen  255 LRLLRILGQNDA-DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR------VLAINILGKFLLNRDN  327 (866)
T ss_pred             HHHHHHhcCCCc-cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH------HHHHHHHHHHhcCCcc
Confidence            666666665532 22223333333333322221   1345555555555543332211      1246778888888888


Q ss_pred             cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh
Q 043950          250 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL  329 (458)
Q Consensus       250 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll  329 (458)
                      .+|.-|+..|......++...+.-     -..++++|+++ |..+|+.|......+...  .++..     ++..|+.+|
T Consensus       328 NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL  394 (866)
T KOG1062|consen  328 NIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFL  394 (866)
T ss_pred             ceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHH
Confidence            888888888888887666554432     34588999999 999999999998888753  34443     455788999


Q ss_pred             ccCChhhHHHHHHHHHHhhcCCCHH
Q 043950          330 QDAEFDIKKEAALAIANATVRGTHE  354 (458)
Q Consensus       330 ~~~~~~~~~~a~~~L~~l~~~~~~~  354 (458)
                      ...+++++..++.-+..++....++
T Consensus       395 ~~~d~~~k~~~as~I~~laEkfaP~  419 (866)
T KOG1062|consen  395 ESSDEDFKADIASKIAELAEKFAPD  419 (866)
T ss_pred             HhccHHHHHHHHHHHHHHHHhcCCc
Confidence            8889999999999999998765543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=5.3e-08  Score=92.39  Aligned_cols=377  Identities=14%  Similarity=0.095  Sum_probs=236.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +..|.+.+++++.++.++..|+.+..++.... ++...     .+++..-++|.+.+ .-+-..++..+..++..+++..
T Consensus       142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e-----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l  214 (866)
T KOG1062|consen  142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVE-----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDAL  214 (866)
T ss_pred             HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHH-----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHH
Confidence            34778888999999999999999999997764 33222     35777788888887 6888889999999998877766


Q ss_pred             HHHHhCCChHHHHHhh----CC-----------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc--c
Q 043950          103 NVVIDHGAVPIFVKLL----AS-----------PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA--K  165 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll----~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~  165 (458)
                      ..+.+  .++-++..|    .+           ++|-++-..++.|.-+..+++...+.+.+  ++..+......+.  .
T Consensus       215 ~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~G  290 (866)
T KOG1062|consen  215 SYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAG  290 (866)
T ss_pred             HHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccch
Confidence            65554  444444444    22           46888999999999998888776554432  2222222221111  2


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC
Q 043950          166 LSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG  245 (458)
Q Consensus       166 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~  245 (458)
                      ..+...+..++..+-.+.     ....-++..|.+++.+.|..++.-++..|......++...+..     =..++.+|+
T Consensus       291 nAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~  360 (866)
T KOG1062|consen  291 NAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLK  360 (866)
T ss_pred             hHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhc
Confidence            345555556665554332     2334556778899999999999999999999997776554432     267889999


Q ss_pred             CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHH
Q 043950          246 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVP  324 (458)
Q Consensus       246 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~  324 (458)
                      +++..+++.|+.....+..  +.+...     +++.|+..|.+. +++.|...+.-+..++. -.|+.+.      .+..
T Consensus       361 DpD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------~idt  426 (866)
T KOG1062|consen  361 DPDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------HIDT  426 (866)
T ss_pred             CCcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------HHHH
Confidence            9999999999999988874  334343     467789999988 99999999999998886 2333333      3445


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhhcCCCH----HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhccc
Q 043950          325 LVNVLQDAEFDIKKEAALAIANATVRGTH----EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNT  400 (458)
Q Consensus       325 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~  400 (458)
                      +.+.+...-.-++..+...+..+...+..    .....+...  +..-. ++.-+++.+...+.|+|+.+-+..-.....
T Consensus       427 ml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a--~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~~~~~  503 (866)
T KOG1062|consen  427 MLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLA--LSEDT-LLDISQEPLLQVASWCIGEYGDLLLDGANE  503 (866)
T ss_pred             HHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHH--Hhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhcCccc
Confidence            56666555444444444445444443311    111111110  00000 223344556777888888765432221100


Q ss_pred             CCCCCchhHHHHHHHhcchHHHHHhhhcC--CChHHHHHHHHHHHHh
Q 043950          401 GSTIGDVNQYARLVEEDEGFKKIEGLKSH--DNNGIREKAVKILETY  445 (458)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~v~~~a~~~l~~~  445 (458)
                              .-.....+...+..|..++.+  .+..++.+|...+-++
T Consensus       504 --------~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KL  542 (866)
T KOG1062|consen  504 --------EEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKL  542 (866)
T ss_pred             --------cCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence                    002223345556666666422  3355555555555443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=2.4e-08  Score=90.86  Aligned_cols=320  Identities=17%  Similarity=0.109  Sum_probs=208.5

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc
Q 043950           63 IQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG  142 (458)
Q Consensus        63 ~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  142 (458)
                      .-+++++..+..+.+++ ..+|..|+..+.|++.. ...........+...++++..+.+..++. +...+-.+..+...
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence            34578899999999998 79999999999999873 22222223345567788888777666664 44555555433221


Q ss_pred             hhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950          143 CRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY  219 (458)
Q Consensus       143 ~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~  219 (458)
                      -+..   .--++.++.++.   ...++..+.....-+..+-..++.........+++.+..++.++..+++.-.=.++++
T Consensus       158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~  234 (675)
T KOG0212|consen  158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE  234 (675)
T ss_pred             cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            1110   112444444442   5567888888877777776654333334458889999999999999998655554444


Q ss_pred             hc---cCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChh-hHH
Q 043950          220 LS---YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKK-SIK  295 (458)
Q Consensus       220 l~---~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~v~  295 (458)
                      +.   .+++...   --...++.++.-+.++++.++..|+..+..+..-.+...- ..-+|++..++.++.+. +. .++
T Consensus       235 fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~-e~~~i~  309 (675)
T KOG0212|consen  235 FLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDT-EEMSIK  309 (675)
T ss_pred             HHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCC-ccccHH
Confidence            43   1222211   1225678899999999999999999888888765544322 23467888888888877 44 355


Q ss_pred             HHHHHHHHHhhc--CCHHHHHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 043950          296 KVACWTISNITA--GNREQIQAVID-AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLL  372 (458)
Q Consensus       296 ~~a~~~l~nl~~--~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll  372 (458)
                      ..+...-..+.+  +.+..... ++ ..++..+...+.++..+.|..++.-+..+-.....+...  ........|..-+
T Consensus       310 ~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tL  386 (675)
T KOG0212|consen  310 EYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTL  386 (675)
T ss_pred             HHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhh
Confidence            444333222222  11111111 22 236778888889989999999988888886543322211  2345778888888


Q ss_pred             cCCCHHHHHHHHHHHHHHHHhchh
Q 043950          373 LCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       373 ~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      .+.+++|+..++..+..++.....
T Consensus       387 sd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  387 SDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             cCchhHHHHHHHHHHHHHhcCccc
Confidence            999999999999999999987655

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.99  E-value=3.2e-08  Score=89.21  Aligned_cols=227  Identities=15%  Similarity=0.151  Sum_probs=160.6

Q ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhhcCCCCCChhhhh-------hhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 043950          153 LIPLLAQLNEH-AKLSMLRIATWTLSKLCKGKPQPPFDQVR-------PALPALAQLIHLDDEEVLSDACWTLSYLSYGT  224 (458)
Q Consensus       153 l~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  224 (458)
                      ...++.++..- +++++.++++..+..+....+........       .....+..++.++|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            34455555444 77889999999999999887644433332       14566777888999999999999999999776


Q ss_pred             hhhHHHHHHhCcHHHHHHHhCC----CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh------ccCChhhH
Q 043950          225 NDKIQVVIEAGVCRRLVELLGH----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL------IHNHKKSI  294 (458)
Q Consensus       225 ~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll------~~~~~~~v  294 (458)
                      +....... .+.++.++..+.+    ++..++..++.++.++.. .+..+..+.+.++++.+..++      .++...++
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            65444222 4556677766654    445677889999999986 777888888999999999999      44447789


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950          295 KKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL  373 (458)
Q Consensus       295 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  373 (458)
                      +.+++.++..++- +++....+.+.++++.|.++++.. .+++..-++.++.|++..........++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            9999999998875 567888888888999999999764 67899999999999998876567888888888877777665


Q ss_pred             --CCCHHHHHH
Q 043950          374 --CVDPKIVTV  382 (458)
Q Consensus       374 --~~~~~v~~~  382 (458)
                        ..|+++.+-
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence              367777654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=2e-06  Score=80.15  Aligned_cols=315  Identities=15%  Similarity=0.087  Sum_probs=214.3

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      .++..|+.-+..+. +.+|.....++..+.........    ..+.+.+.+++......-+..+.+.++.+..+...  .
T Consensus        96 ~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~  168 (569)
T KOG1242|consen   96 SIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--E  168 (569)
T ss_pred             HHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--h
Confidence            35677788888888 89999888888766552111111    12357788888888888888899999988776533  3


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN  225 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  225 (458)
                      ...+.+.+..+.....+..+...++.+..+.-..+..-...........+|.+..-+.+..+.++..+..+...+...-+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            45567788888888854444444444555544444443333344456777777777778888999888877766653322


Q ss_pred             -hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950          226 -DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN  304 (458)
Q Consensus       226 -~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n  304 (458)
                       ....     .+++.++.-+....+.-+..++..++.++...+.+.... -..++|.+.+.|-+. .+++|+.+..++..
T Consensus       249 ~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT-~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  249 AYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDT-KPEVRKAGIETLLK  321 (569)
T ss_pred             cchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccC-CHHHHHHHHHHHHH
Confidence             2222     234555555555588899999999999988777665544 468999999999999 99999999999999


Q ss_pred             hhc--CCHHHHHHHHHc----------------------------------CChHHHHHHhccCChhhHHHHHHHHHHhh
Q 043950          305 ITA--GNREQIQAVIDA----------------------------------GLIVPLVNVLQDAEFDIKKEAALAIANAT  348 (458)
Q Consensus       305 l~~--~~~~~~~~l~~~----------------------------------~~~~~L~~ll~~~~~~~~~~a~~~L~~l~  348 (458)
                      +++  .+++ ++.++..                                  -++|.|.+-+...+...++.++..+.|++
T Consensus       322 ~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~  400 (569)
T KOG1242|consen  322 FGSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC  400 (569)
T ss_pred             HHHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence            986  3433 4333210                                  02555555666668888899999999998


Q ss_pred             cCC-CHHH-HHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhh
Q 043950          349 VRG-THEQ-IKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAE  397 (458)
Q Consensus       349 ~~~-~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~  397 (458)
                      .-- ++.. ..++-+  +++.+-..+....|++|..+..+|+.+.+.....
T Consensus       401 ~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  401 KLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEV  449 (569)
T ss_pred             HhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence            643 3333 233222  5566666666778999999999998888765554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.95  E-value=9.5e-08  Score=93.08  Aligned_cols=271  Identities=18%  Similarity=0.226  Sum_probs=206.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 043950           37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK  116 (458)
Q Consensus        37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  116 (458)
                      ..-|+.|........+..+.++.+       +|..++.|-++   --|..|+..|+.+..-.+-....-..-|++|..++
T Consensus       450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK  519 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK  519 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence            456777777776666655444333       56667766653   34788999999999877888888888899999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc--ccHHHHHHHHHHHHHhhcCCCCCChhhh-hh
Q 043950          117 LLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH--AKLSMLRIATWTLSKLCKGKPQPPFDQV-RP  193 (458)
Q Consensus       117 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~  193 (458)
                      +|+++-.++|..-+.+.+.|..-++.|+..+++.++-.+.+..+..+  -+++-+..++.+|..++.+.+..+.... .+
T Consensus       520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~  599 (1387)
T KOG1517|consen  520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN  599 (1387)
T ss_pred             HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence            99999999999999999998888888888888888887888777542  2457888999999999998755555444 66


Q ss_pred             hHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC----Chh
Q 043950          194 ALPALAQLIHLD-DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG----DDF  268 (458)
Q Consensus       194 ~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~----~~~  268 (458)
                      ++..+...+.++ .+-.+..++-||+.+-++.+...=.-.+.+..+.|+.+|.++-++||..|+++|+.+...    .++
T Consensus       600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde  679 (1387)
T KOG1517|consen  600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE  679 (1387)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence            777788888874 688899999999999977665444355667899999999999999999999999999874    222


Q ss_pred             hHHHH------------HhcCCh---HHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043950          269 QTQCI------------INHGAV---PCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID  318 (458)
Q Consensus       269 ~~~~~------------~~~~~~---~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~  318 (458)
                      .....            ++..+.   -.++.+++.. .+-++.+.+-+++.++.+...++...+-
T Consensus       680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~  743 (1387)
T KOG1517|consen  680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG  743 (1387)
T ss_pred             hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence            22221            122222   2667777777 8999999999999999876666554443

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=6.7e-06  Score=70.44  Aligned_cols=363  Identities=16%  Similarity=0.154  Sum_probs=239.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCcc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPR---IEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      .|.|-..|..++..+..-++..+..++.+.+...   +..+++.++.+.++..+..++ .++...|...+..++. .+..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence            5566666778889999999999988877653222   344568899999999999998 7999999999999998 6888


Q ss_pred             HHHHHhCCChHHHH--HhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950          102 TNVVIDHGAVPIFV--KLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       102 ~~~~~~~~~i~~L~--~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l  179 (458)
                      ...+++++..+.+-  .+-...+.-.|..+...+..+..-++.....+...|.+..+..-+....|.-++..++.....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            88888877665543  3333455666777888888888888888888888899999998886557888889999999999


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCCh--h-hHHHHHHh--CcHHHHHHHhCCCCccch
Q 043950          180 CKGKPQPPFDQVRPALPALAQLIHL--DDEEVLSDACWTLSYLSYGTN--D-KIQVVIEA--GVCRRLVELLGHPSPSVL  252 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~--~-~~~~~~~~--~~i~~L~~ll~~~~~~~~  252 (458)
                      .............++++.+...+..  .+|--.-.++...+.+-....  + .-+.+.+.  -.++..++.+..+++...
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            8776666666678899988888873  344444444444443331110  0 00111111  234555667777899999


Q ss_pred             hhHHHHHhHhhcCChhhHHHHHhcCC--hHHHH-HHhccCChhhHHHHHHHHHHHhhcC---CHHHH---------HHHH
Q 043950          253 TPALWTVGNIVMGDDFQTQCIINHGA--VPCLL-ALLIHNHKKSIKKVACWTISNITAG---NREQI---------QAVI  317 (458)
Q Consensus       253 ~~a~~~l~~l~~~~~~~~~~~~~~~~--~~~l~-~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~---------~~l~  317 (458)
                      ..|..+++.+.+.. +..+.+.+.|-  .+.++ .....+ ...-+..+..+|.++++.   .++++         ..++
T Consensus       322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli  399 (524)
T KOG4413|consen  322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI  399 (524)
T ss_pred             HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence            99999999997643 33344443332  22222 222222 233455677888888751   22221         1111


Q ss_pred             -H-------cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC---CHHHHHHHHHH
Q 043950          318 -D-------AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV---DPKIVTVCLEG  386 (458)
Q Consensus       318 -~-------~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~~~~~  386 (458)
                       +       -.-...+..+++.+.++++..++..+..++.. .......+...++++...+.--..   ..+-+..++++
T Consensus       400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDastEhaKaakdAkYeccKA  478 (524)
T KOG4413|consen  400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKA  478 (524)
T ss_pred             HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHH
Confidence             1       13355667778888999999999999999864 333444445667776666543321   12345556666


Q ss_pred             HHHHHH
Q 043950          387 LENILK  392 (458)
Q Consensus       387 l~~l~~  392 (458)
                      +.+-+-
T Consensus       479 iaeafl  484 (524)
T KOG4413|consen  479 IAEAFL  484 (524)
T ss_pred             HHHHHH
Confidence            655444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.90  E-value=1.9e-06  Score=79.11  Aligned_cols=348  Identities=11%  Similarity=0.029  Sum_probs=225.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCccHHHHH----------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           35 DDNSLQLEATTQFRILLSIERSPRIEDVI----------QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        35 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----------~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      .++..|..|..+|.|-+....+.......          ..-+-...++.|.++. |..-..|+..++.++.-.      
T Consensus        53 s~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~e-pr~~~~Aaql~aaIA~~E------  125 (858)
T COG5215          53 SNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPE-PRFCTMAAQLLAAIARME------  125 (858)
T ss_pred             CcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhh------
Confidence            35778888888888765543222111111          1111223345566777 777788888888877621      


Q ss_pred             HHhCCChHHHHH----hhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCC-HHHHHHH-hcccccHHHHHHHHHHHH
Q 043950          105 VIDHGAVPIFVK----LLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEA-LIPLLAQ-LNEHAKLSMLRIATWTLS  177 (458)
Q Consensus       105 ~~~~~~i~~L~~----ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~l~~~-l~~~~~~~~~~~a~~~l~  177 (458)
                       +..+..|-|..    .... .....+..++.++++.|..... ...+...+. +-.++.. +...++..++-.++.+|.
T Consensus       126 -lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~  203 (858)
T COG5215         126 -LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALM  203 (858)
T ss_pred             -CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHH
Confidence             12233444433    3333 4457888899999999966533 233333333 3333333 335567778888888888


Q ss_pred             Hhh-cCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhH
Q 043950          178 KLC-KGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA  255 (458)
Q Consensus       178 ~l~-~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a  255 (458)
                      +-+ .-. .........-+++...+.-+.+|.+++..+..|+..+..-.-...+...+.-+.....+.++++++++...+
T Consensus       204 dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qa  283 (858)
T COG5215         204 DSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQA  283 (858)
T ss_pred             HHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            722 111 111222234566777788889999999999999999986655566667777788888899999999999999


Q ss_pred             HHHHhHhhcCChhhHHHHH----------------hcCChHHHHHHhccC------ChhhHHHHHHHHHHHhhcCCHHHH
Q 043950          256 LWTVGNIVMGDDFQTQCII----------------NHGAVPCLLALLIHN------HKKSIKKVACWTISNITAGNREQI  313 (458)
Q Consensus       256 ~~~l~~l~~~~~~~~~~~~----------------~~~~~~~l~~ll~~~------~~~~v~~~a~~~l~nl~~~~~~~~  313 (458)
                      ....+.+|....+......                -.+++|.++++|...      .+..+...|..+|--++....   
T Consensus       284 vEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---  360 (858)
T COG5215         284 VEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG---  360 (858)
T ss_pred             HHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---
Confidence            9888888754322111111                124789999999762      145677777777777764211   


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950          314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       314 ~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~  393 (458)
                      +.+++. ++..+-.-+.+++..-++.+..+++.+..+.......++.. ..++.+..++.++---++..+.|+++.|.+.
T Consensus       361 d~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         361 DKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMSDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             hHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence            122222 44455556778888899999999999999877777666544 5677788877766667888899999999876


Q ss_pred             chh
Q 043950          394 GEA  396 (458)
Q Consensus       394 ~~~  396 (458)
                      ...
T Consensus       439 va~  441 (858)
T COG5215         439 VAM  441 (858)
T ss_pred             HHH
Confidence            444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.90  E-value=8.1e-07  Score=81.40  Aligned_cols=350  Identities=13%  Similarity=0.047  Sum_probs=211.1

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh----CCCh
Q 043950           36 DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVID----HGAV  111 (458)
Q Consensus        36 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~----~~~i  111 (458)
                      ......+++.++..++....++........-++.....-++.+.+..+|..|+.+|.+-+..   .+..+..    +-++
T Consensus       147 p~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~m  223 (858)
T COG5215         147 PVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFM  223 (858)
T ss_pred             chHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhh
Confidence            35677888888888876542322222222223333344455655578999999998873221   1111111    1235


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCC----
Q 043950          112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP----  187 (458)
Q Consensus       112 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~----  187 (458)
                      +..+..-+.++.+++..+..+|..+..-.-.+-...++ +.+..+.....++++.++...+....+.+|.......    
T Consensus       224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~  302 (858)
T COG5215         224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK  302 (858)
T ss_pred             eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence            66777778899999999999999886432111122222 2344444444478888888888888777776541111    


Q ss_pred             -------------hhhhhhhHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC
Q 043950          188 -------------FDQVRPALPALAQLIHL-------DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP  247 (458)
Q Consensus       188 -------------~~~~~~~l~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  247 (458)
                                   ......++|.+..+|..       +|+.+...+..||--.++...+   .+.+. ++..+-+-+.++
T Consensus       303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~p-Vl~FvEqni~~~  378 (858)
T COG5215         303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMRP-VLGFVEQNIRSE  378 (858)
T ss_pred             hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHHH-HHHHHHHhccCc
Confidence                         11135688999999864       3466667777777666543222   12222 455555667788


Q ss_pred             CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHH
Q 043950          248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVN  327 (458)
Q Consensus       248 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~  327 (458)
                      ++.-++.|..+++.+..+..+....-+-...+|.+...+.++ .-.++..++|+++.++.+-+..+.   ..|-++..+.
T Consensus       379 ~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~vs  454 (858)
T COG5215         379 SWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLEVS  454 (858)
T ss_pred             hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhcC---ccccccHHHH
Confidence            999999999999999987766655555567899999999877 788999999999999854333222   2333333333


Q ss_pred             Hhc---cCChhhHHHHHHHHHHhhcCCCHHH---HHHHHH--CCChHHHHhhcc--CCCHHHHHHHHHHHHHHHHhchhh
Q 043950          328 VLQ---DAEFDIKKEAALAIANATVRGTHEQ---IKYLVR--EGCIKPLCDLLL--CVDPKIVTVCLEGLENILKVGEAE  397 (458)
Q Consensus       328 ll~---~~~~~~~~~a~~~L~~l~~~~~~~~---~~~l~~--~~~l~~L~~ll~--~~~~~v~~~~~~~l~~l~~~~~~~  397 (458)
                      ...   .+.+.+..++.|...|++.+-.+..   ...+..  ...+..|+..-+  ..+...+..+..+|+.++.+.+..
T Consensus       455 a~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~  534 (858)
T COG5215         455 ASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA  534 (858)
T ss_pred             HHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh
Confidence            222   2367788889999999976432211   111111  011222222111  234467777788888877765553

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=3e-07  Score=87.41  Aligned_cols=347  Identities=16%  Similarity=0.142  Sum_probs=225.1

Q ss_pred             hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950           19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT   98 (458)
Q Consensus        19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~   98 (458)
                      ....++++.+++-..++++.+|..|++.+..+--   .....     -+...+.+.+++.+ +-+|..++.+..++-..+
T Consensus        82 ~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~e-----y~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~  152 (734)
T KOG1061|consen   82 DLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV---DKITE-----YLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID  152 (734)
T ss_pred             hHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee---hHHHH-----HHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC
Confidence            4556678888888888899999988877665511   11121     25678889999998 899999999988887743


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950           99 SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK  178 (458)
Q Consensus        99 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~  178 (458)
                         .+.....|.++.|..++.+.++.+..+|+.+|..+...++...........+..++..+...    .--.-+.++..
T Consensus       153 ---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec----~EW~qi~IL~~  225 (734)
T KOG1061|consen  153 ---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC----TEWGQIFILDC  225 (734)
T ss_pred             ---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh----hhhhHHHHHHH
Confidence               44566789999999999999999999999999999876654211222222344444444221    12222445566


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950          179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT  258 (458)
Q Consensus       179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  258 (458)
                      ++...+... .....++..+...+.+.++.+...+...+.+....-..... ..-..+-+.++.++.+.. ++...++.-
T Consensus       226 l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrN  302 (734)
T KOG1061|consen  226 LAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRN  302 (734)
T ss_pred             HHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhh
Confidence            666654444 45577888888889999988888888888777754443222 233345566777776655 555555544


Q ss_pred             HhHhhcCChhhHHHH-------------------------H-hcCChHHHHHHh---ccCChhhHHHHHHHHHHHhhcCC
Q 043950          259 VGNIVMGDDFQTQCI-------------------------I-NHGAVPCLLALL---IHNHKKSIKKVACWTISNITAGN  309 (458)
Q Consensus       259 l~~l~~~~~~~~~~~-------------------------~-~~~~~~~l~~ll---~~~~~~~v~~~a~~~l~nl~~~~  309 (458)
                      +.-+....+.....-                         . +.++-+.+-++.   ..- |.+..+.+.+++++++..-
T Consensus       303 i~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~  381 (734)
T KOG1061|consen  303 INLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKA  381 (734)
T ss_pred             HHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhh
Confidence            444333222211100                         0 111111122222   222 6677889999999998643


Q ss_pred             HHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CCHHHHHHHHHHHH
Q 043950          310 REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLE  388 (458)
Q Consensus       310 ~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~  388 (458)
                      ++.      .+.+..|++++...-..+..+++..+..+........ +.     ++..+...+++ ++|+.+....|+++
T Consensus       382 e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~-----vv~~l~~~~~sl~epeak~amiWilg  449 (734)
T KOG1061|consen  382 EQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ES-----VVAILCENLDSLQEPEAKAALIWILG  449 (734)
T ss_pred             hhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hh-----hhhhhcccccccCChHHHHHHHHHHh
Confidence            221      5789999999998877788888889999887654222 22     35555555553 67888888899998


Q ss_pred             HHHHhchhh
Q 043950          389 NILKVGEAE  397 (458)
Q Consensus       389 ~l~~~~~~~  397 (458)
                      ......++.
T Consensus       450 ~y~~~i~~a  458 (734)
T KOG1061|consen  450 EYAERIENA  458 (734)
T ss_pred             hhhhccCcH
Confidence            887765554

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.88  E-value=1.4e-07  Score=84.19  Aligned_cols=272  Identities=14%  Similarity=0.081  Sum_probs=184.3

Q ss_pred             hhHhhccHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q 043950           18 LQTKLEILPAMVAGVWSDD--NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIA   95 (458)
Q Consensus        18 ~~~~~~~i~~l~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~   95 (458)
                      ..+.-|.+..|++++.+++  .+++.++.+.|..+...   ++.+.+...| ...++.+-+....++.+...+.+|.++.
T Consensus       175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            3455678999999999887  45699999999999774   5666777666 5556666665554799999999999999


Q ss_pred             CCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHH
Q 043950           96 SGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATW  174 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~  174 (458)
                      .++++....++..|+++.++-.....++.+.++|+.+|+|++-.. ...+..+++..+-..|+-+. .+.|.-++.++|-
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~ACl  329 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACL  329 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHH
Confidence            999999999999999999999999889999999999999998433 34555666777777777666 6668888999999


Q ss_pred             HHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhh
Q 043950          175 TLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP  254 (458)
Q Consensus       175 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~  254 (458)
                      +.+.+..+..........+.+...-.++.+-|+.--..          ...+..+ --..+.++.|+.+|.+...+.+.-
T Consensus       330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----------D~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i  398 (832)
T KOG3678|consen  330 AVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFAR----------DAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCI  398 (832)
T ss_pred             HHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhh----------hhhhhhc-cCChHHHHHhhhhhhcchhhhhhh
Confidence            99999987644444444566655556666655533211          1111111 111235788888888654333332


Q ss_pred             HHHHHhHhhc-CCh-hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950          255 ALWTVGNIVM-GDD-FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT  306 (458)
Q Consensus       255 a~~~l~~l~~-~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~  306 (458)
                      +.+-++.=+. ... ...+.+.+-|.++.|.++.+++ +..-.+.|..+|.-+.
T Consensus       399 ~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviG  451 (832)
T KOG3678|consen  399 GAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIG  451 (832)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhc
Confidence            2222211111 111 1223344668899999988877 6544444555554443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=3.6e-06  Score=80.16  Aligned_cols=215  Identities=18%  Similarity=0.171  Sum_probs=123.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHH
Q 043950           68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV  147 (458)
Q Consensus        68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  147 (458)
                      |..+-+-|++++ +.+|..|+++|..+--.       ++..-.+-++-+...+.++.+|..|+.++-.+-.-+++.... 
T Consensus       110 IntfQk~L~DpN-~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q-  180 (968)
T KOG1060|consen  110 INTFQKALKDPN-QLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ-  180 (968)
T ss_pred             HHHHHhhhcCCc-HHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH-
Confidence            455555666777 67777777776654331       111111233444455677788888888877776555554332 


Q ss_pred             hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC---
Q 043950          148 LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT---  224 (458)
Q Consensus       148 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~---  224 (458)
                           +..+++.|..+.++-+...|..++-.+|-+    ....+.+-...+..++.+-+.--+..++..|...+...   
T Consensus       181 -----L~e~I~~LLaD~splVvgsAv~AF~evCPe----rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~  251 (968)
T KOG1060|consen  181 -----LEEVIKKLLADRSPLVVGSAVMAFEEVCPE----RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD  251 (968)
T ss_pred             -----HHHHHHHHhcCCCCcchhHHHHHHHHhchh----HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence                 334555555777777778777777777643    34445566666666666555544555555554444220   


Q ss_pred             hhhH---------------------HH-HHHh---CcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCCh
Q 043950          225 NDKI---------------------QV-VIEA---GVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAV  279 (458)
Q Consensus       225 ~~~~---------------------~~-~~~~---~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~  279 (458)
                      +...                     .. ..+.   -+++..-.++.+.++.+...++.+...++-.+  ..     ..++
T Consensus       252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~-----~~i~  324 (968)
T KOG1060|consen  252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QV-----TKIA  324 (968)
T ss_pred             ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HH-----HHHH
Confidence            0000                     00 0000   02344445666778888888888888887433  11     2457


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhcCC
Q 043950          280 PCLLALLIHNHKKSIKKVACWTISNITAGN  309 (458)
Q Consensus       280 ~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  309 (458)
                      +.|+.+|.++  ..++......+..++...
T Consensus       325 kaLvrLLrs~--~~vqyvvL~nIa~~s~~~  352 (968)
T KOG1060|consen  325 KALVRLLRSN--REVQYVVLQNIATISIKR  352 (968)
T ss_pred             HHHHHHHhcC--CcchhhhHHHHHHHHhcc
Confidence            7888888754  456666666666666443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=9.8e-07  Score=80.73  Aligned_cols=350  Identities=11%  Similarity=0.093  Sum_probs=212.3

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCC
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNI----ASGT   98 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l----~~~~   98 (458)
                      +.+|+++.++...|..++..|+..+.+++..-+.+..  ..-..+...+.++..+++ +.++.. +..+-.+    ....
T Consensus        84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd-~~V~~~-aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSD-QNVRGG-AELLDRLIKDIVTES  159 (675)
T ss_pred             HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCc-cccccH-HHHHHHHHHHhcccc
Confidence            3478888888899999999999999888765322221  222346677788877776 565543 3333333    3221


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh-hhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950           99 SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL-REEALIPLLAQLNEHAKLSMLRIATWTLS  177 (458)
Q Consensus        99 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~l~  177 (458)
                      ..   .+-=.+.+|.|-.-+...++..|...+.-+..+- ..|.. +++. -...++.++..+ .+++++++..+-.+++
T Consensus       160 ~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~~-~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~  233 (675)
T KOG0212|consen  160 AS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD-SVPDL-EMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLS  233 (675)
T ss_pred             cc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCcH-HHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHH
Confidence            11   1111234555555555578888887776666653 33332 3322 223566777777 6777888877776666


Q ss_pred             HhhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc-cchhhH
Q 043950          178 KLCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP-SVLTPA  255 (458)
Q Consensus       178 ~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a  255 (458)
                      ++...- ..+........++.++.-++++++.++..++.-+..+..-.+... ...-+|++..+.+++.+.++ .++..+
T Consensus       234 ~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a  312 (675)
T KOG0212|consen  234 EFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYA  312 (675)
T ss_pred             HHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHH
Confidence            665433 122222456778889999999999999988877777765444322 23446788888888888766 355554


Q ss_pred             HHHH---hHhhcCChhhHHHHHh-cCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc
Q 043950          256 LWTV---GNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD  331 (458)
Q Consensus       256 ~~~l---~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~  331 (458)
                      ...-   ..++.... .... ++ ..+++.+.+.+.++ ..+.|..+..-+..+-...+.++- .....+++.|...|++
T Consensus       313 ~~~n~~l~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd  388 (675)
T KOG0212|consen  313 QMVNGLLLKLVSSER-LKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSD  388 (675)
T ss_pred             HHHHHHHHHHHhhhh-hccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcC
Confidence            4332   22222111 1111 22 24677888888888 888888877666655543333222 2235689999999999


Q ss_pred             CChhhHHHHHHHHHHhhcCCCHH-HHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950          332 AEFDIKKEAALAIANATVRGTHE-QIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~  393 (458)
                      .+.++...++..+.+++...+.. .+++      +..|..++..+..-+..++--++..++-.
T Consensus       389 ~sd~vvl~~L~lla~i~~s~~~~~~~~f------l~sLL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  389 RSDEVVLLALSLLASICSSSNSPNLRKF------LLSLLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             chhHHHHHHHHHHHHHhcCcccccHHHH------HHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            99999999999999999865432 2222      33344444444433444454455555443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=2.9e-07  Score=89.81  Aligned_cols=248  Identities=17%  Similarity=0.202  Sum_probs=191.4

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +.+|.+++.|-|  .-.|+.|+..|.+++... ......-..-|+.|..++||+++. .+++..-+.+...+..-++.+.
T Consensus       472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence            456777777655  456778889999997765 777887788899999999999999 7999999999999887778888


Q ss_pred             HHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950          103 NVVIDHGAVPIFVKLLAS---PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l  179 (458)
                      ..+++.++-..+++.|..   -+++-|..|+.+|+.++.+-+..++...+.+.+...+.+++++..+-++.-++-+|..|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            888888777788887765   24688999999999999887777888888888888888885545678899999999999


Q ss_pred             hcCCCCCChhhh-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC----hhhHHHH------------HHhCcH---HH
Q 043950          180 CKGKPQPPFDQV-RPALPALAQLIHLDDEEVLSDACWTLSYLSYGT----NDKIQVV------------IEAGVC---RR  239 (458)
Q Consensus       180 ~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~------------~~~~~i---~~  239 (458)
                      -.+.+.....-. ......|..++.++-++++..+..+|+.+..+.    ++....+            ++.-+.   -.
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            888754444433 678889999999999999999999999988652    2222211            121122   25


Q ss_pred             HHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH
Q 043950          240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII  274 (458)
Q Consensus       240 L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  274 (458)
                      ++..++...+-++....-+++.+..++......+.
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            66677777888888888888888776665544443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=5e-06  Score=78.43  Aligned_cols=276  Identities=14%  Similarity=0.132  Sum_probs=191.2

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      ++.+.++.+|.++. +-+|..|+.++..+....|+...     ..+|.|..-|.++++.++..|+.+++.|++.+|..  
T Consensus       144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--  215 (877)
T KOG1059|consen  144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--  215 (877)
T ss_pred             HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--
Confidence            35677788999988 89999999999999886666543     34799999999999999999999999999888763  


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC-hHHHHHHHHHHH--Hhcc
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD-EEVLSDACWTLS--YLSY  222 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~--~l~~  222 (458)
                      .+   ..-|.+.++|..+.+.=+....+..+.+|+--.    ......+++.+..++.+.. ..+...++.++.  +++.
T Consensus       216 yL---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE----PRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  216 YL---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE----PRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             cc---cccHHHHHHHhccCCCeehHHHHHHHhhccccC----chhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence            11   234666777766666556666777777776443    3445778888888888654 344444444443  2332


Q ss_pred             CChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950          223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTI  302 (458)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l  302 (458)
                      +.++... .+. -.+..|-.++.+.++.++.-++.+++.+...++...+.     --+.++.+|.+. |+.+|..|...+
T Consensus       289 g~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl  360 (877)
T KOG1059|consen  289 GMSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLL  360 (877)
T ss_pred             CCCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHH
Confidence            2211111 111 14678888889999999999999999999888766553     356789999998 999999999999


Q ss_pred             HHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950          303 SNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL  373 (458)
Q Consensus       303 ~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  373 (458)
                      .-+..  .+++..     ++..|+..+... ....+.+.+.-+..+|..++...+..+--  ++..|+++..
T Consensus       361 ~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEW--YlsVlveLa~  423 (877)
T KOG1059|consen  361 YGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEW--YLSVLVELAR  423 (877)
T ss_pred             HHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHH--HHHHHHHHHh
Confidence            98874  344443     444566655443 34778888888888877654443333221  3455555554

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=1.7e-05  Score=77.98  Aligned_cols=329  Identities=16%  Similarity=0.162  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHHhcCCCCcc----HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 043950           39 LQLEATTQFRILLSIERSPR----IEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIF  114 (458)
Q Consensus        39 ~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  114 (458)
                      -...++.+|.|+.+.. ++-    ..+..--|.++.+..++.....+.++.-|+.++..+.. +.++...+++.|.+..|
T Consensus      1741 ~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence            5567899999998875 222    12223347788888888766558899999999988777 78999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC---CCCChhhh
Q 043950          115 VKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK---PQPPFDQV  191 (458)
Q Consensus       115 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~  191 (458)
                      +.+|.+. |..|+.++.+|..++.... ......+.|++..+...+-...++..+..+...+..+...+   |......+
T Consensus      1819 L~lLHS~-PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHSQ-PSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred             HHHHhcC-hHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence            9999764 6678889999999976654 44556678999999988878888899999999999998776   33333322


Q ss_pred             hhhHHHHHH-----------hhc--CCChHH------HHHHHHHHHHhccC-------Ch-------h------------
Q 043950          192 RPALPALAQ-----------LIH--LDDEEV------LSDACWTLSYLSYG-------TN-------D------------  226 (458)
Q Consensus       192 ~~~l~~l~~-----------ll~--~~~~~~------~~~~~~~l~~l~~~-------~~-------~------------  226 (458)
                      ..+-..++.           .+.  +++++.      +...-..+..++..       ++       +            
T Consensus      1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred             HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence            222222333           332  122221      22222222222210       00       0            


Q ss_pred             ------hHHHHHH------------hCcHHHHHHHhCCCCcc--chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh
Q 043950          227 ------KIQVVIE------------AGVCRRLVELLGHPSPS--VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL  286 (458)
Q Consensus       227 ------~~~~~~~------------~~~i~~L~~ll~~~~~~--~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  286 (458)
                            ....+.+            .++++.+..++..++++  ....-..++-.|.+..+...+.+-..|.+|.++..+
T Consensus      1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred             ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence                  0000111            13566666666665433  233334445556667777777777889999999999


Q ss_pred             ccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChH
Q 043950          287 IHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIK  366 (458)
Q Consensus       287 ~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~  366 (458)
                      ... +..+-..|..+|-.++.. .-....+.....+..++..+... .....-|+.+|..+......+........|.++
T Consensus      2057 ~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvp 2133 (2235)
T KOG1789|consen 2057 CLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVP 2133 (2235)
T ss_pred             Hhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHH
Confidence            877 666778899999988753 35666677666677777777654 444558899999998866666666778899999


Q ss_pred             HHHhhccC
Q 043950          367 PLCDLLLC  374 (458)
Q Consensus       367 ~L~~ll~~  374 (458)
                      .|..+++.
T Consensus      2134 yLL~LLd~ 2141 (2235)
T KOG1789|consen 2134 YLLQLLDS 2141 (2235)
T ss_pred             HHHHHhcc
Confidence            99999984

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.83  E-value=4.8e-06  Score=80.86  Aligned_cols=356  Identities=13%  Similarity=0.094  Sum_probs=224.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950           27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI  106 (458)
Q Consensus        27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  106 (458)
                      .+++.+.+.|-+.|+.|..-|.+=+..+ .-..+.=-+..++..++++|.+.+ .++|..|++|++-++..-++.+-.  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le--   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE--   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence            6788889999999999988776554433 222222223457899999999999 899999999999998744333322  


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc----c-cccHHHHHHHHHHHHHhhc
Q 043950          107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN----E-HAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~----~-~~~~~~~~~a~~~l~~l~~  181 (458)
                        ..+..|+.-+-++....|....-.|.....+-+..........+.+.+...+.    . .....++-.++..+.-+..
T Consensus        85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence              22455666544555555555544444433332222222233334444544443    2 2233366666666665555


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHh
Q 043950          182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVG  260 (458)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~  260 (458)
                      .....-..+...++..+..-+.++-..++..++.+++.++...+..    .-.+++..+.+-|..+ +....+.-..+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            4433333355677777888888888999999999999998544321    1123556666666553 4445555677777


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHh---ccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc------
Q 043950          261 NIVMGDDFQTQCIINHGAVPCLLALL---IHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD------  331 (458)
Q Consensus       261 ~l~~~~~~~~~~~~~~~~~~~l~~ll---~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~------  331 (458)
                      .+++........- -..+++.+.+..   +.. +.+.|+....++..+....|..+...+. .++..+++.+..      
T Consensus       239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence            7776443222211 135788888888   666 7889999999999988766655543332 133333333310      


Q ss_pred             -------------------------C---ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHH
Q 043950          332 -------------------------A---EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVC  383 (458)
Q Consensus       332 -------------------------~---~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~  383 (458)
                                               +   +.+||.+|+.++..+... ..+....+.+ ..-+.++.-++..++.|+.-.
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence                                     0   246899999999999874 4455555444 345678888888888898888


Q ss_pred             HHHHHHHHHhchhh
Q 043950          384 LEGLENILKVGEAE  397 (458)
Q Consensus       384 ~~~l~~l~~~~~~~  397 (458)
                      +.++..++..-...
T Consensus       394 f~~yi~ll~qt~~~  407 (1233)
T KOG1824|consen  394 FHAYIALLKQTRPV  407 (1233)
T ss_pred             HHHHHHHHHcCCCC
Confidence            88888887755443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.81  E-value=1.2e-05  Score=76.29  Aligned_cols=386  Identities=14%  Similarity=0.119  Sum_probs=225.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC-------CCCHHHHHHHHHHHHHHcCC
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR-------EDYPQLQYEAAWALTNIASG   97 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~~~i~~~a~~~L~~l~~~   97 (458)
                      +-.+.+-..++|.+.....+..+.+++..++  .........++|.++...-.       .+...+...+..+-..+.. 
T Consensus       638 mlil~rEf~sPDeemkkivLKVv~qcc~t~G--v~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~-  714 (1172)
T KOG0213|consen  638 MLILIREFGSPDEEMKKIVLKVVKQCCATDG--VEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS-  714 (1172)
T ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHHhcccC--CCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc-
Confidence            3445555667888888878888877766532  22233444566666554422       1222233333322222222 


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch-hhHHhhhCCHHHHHHHhcccc-cHHHHHHHHHH
Q 043950           98 TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC-RNLVLREEALIPLLAQLNEHA-KLSMLRIATWT  175 (458)
Q Consensus        98 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~  175 (458)
                                ...+..++.=+++.++..|..++.+..++...-+.. -+.-.+...+..++..+.... +..+.-.+..+
T Consensus       715 ----------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~  784 (1172)
T KOG0213|consen  715 ----------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGT  784 (1172)
T ss_pred             ----------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHH
Confidence                      123555566667778888887777777665432210 011122334555665554322 23344445555


Q ss_pred             HHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhh--HHHHHHhCcHHHHHHHhCCCCccchh
Q 043950          176 LSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDK--IQVVIEAGVCRRLVELLGHPSPSVLT  253 (458)
Q Consensus       176 l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~  253 (458)
                      +.+-..   .+.+.....++..+...|++..+.++..++..++.++..-...  .+.+-..|  -.|.+.|....+++.-
T Consensus       785 V~~~lg---~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLg  859 (1172)
T KOG0213|consen  785 VVNALG---GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLG  859 (1172)
T ss_pred             HHHHHh---hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHH
Confidence            444322   2334455778888899999999999999999988887321111  12233333  3567778888888887


Q ss_pred             hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH--HHHHHcCChHHHHHHhcc
Q 043950          254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI--QAVIDAGLIVPLVNVLQD  331 (458)
Q Consensus       254 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~--~~l~~~~~~~~L~~ll~~  331 (458)
                      ..+.++..+.....-....-=-.+++|.|..+|++. ..+|+.++...++.++...++.+  ...+.  +---|+++|..
T Consensus       860 sILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLka  936 (1172)
T KOG0213|consen  860 SILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKA  936 (1172)
T ss_pred             HHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHH
Confidence            777777666542211100000247899999999999 99999999999999996443321  11111  22347788888


Q ss_pred             CChhhHHHHHHHHHHhhcCCCH-HHHHHHH----------------------H-CC---ChHHHHhhccCCCHHHHHHHH
Q 043950          332 AEFDIKKEAALAIANATVRGTH-EQIKYLV----------------------R-EG---CIKPLCDLLLCVDPKIVTVCL  384 (458)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~l~----------------------~-~~---~l~~L~~ll~~~~~~v~~~~~  384 (458)
                      .+.++|.+|...++.++..-.+ +....++                      + .|   +++.|.+=-..++-.|+...+
T Consensus       937 hkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVL 1016 (1172)
T KOG0213|consen  937 HKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVL 1016 (1172)
T ss_pred             HHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHH
Confidence            8899999999999999864322 2221111                      1 11   345555544567788999999


Q ss_pred             HHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950          385 EGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY  445 (458)
Q Consensus       385 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  445 (458)
                      ++++-+|++-.+..+         .|.-.+     ...|.+-+.+.+.--++.|..++.++
T Consensus      1017 kalsf~Feyigemsk---------dYiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1017 KALSFMFEYIGEMSK---------DYIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred             HHHHHHHHHHHHHhh---------hHHHHh-----hHHHHHhhccccHHHHHHHHHHHHHH
Confidence            999999988666432         223222     34445555555555555565555544

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=3.7e-06  Score=82.49  Aligned_cols=387  Identities=13%  Similarity=0.095  Sum_probs=244.9

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950           21 KLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM  100 (458)
Q Consensus        21 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  100 (458)
                      +.+.-|..-++.+...+.++..++.-+.+++..-    ..+....++++.+.++..+.. ..+++.|...+.++..-...
T Consensus       235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~  309 (759)
T KOG0211|consen  235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDD  309 (759)
T ss_pred             HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCC
Confidence            3344455555666777999999999999887653    226677789999999999988 69999999888887662111


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc--------------------h-h---------------
Q 043950          101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG--------------------C-R---------------  144 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--------------------~-~---------------  144 (458)
                      ..  -....+.+.+++...+++..++..+......+...-..                    - +               
T Consensus       310 ~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~  387 (759)
T KOG0211|consen  310 DD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN  387 (759)
T ss_pred             ch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence            11  11223467777777777777776665555444421000                    0 0               


Q ss_pred             ----hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950          145 ----NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL  220 (458)
Q Consensus       145 ----~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l  220 (458)
                          ..+.....++.+-.+. .+.++.++...+.....+.-.  ......+....|.....++..++.++....+.+..+
T Consensus       388 ~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~--~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~  464 (759)
T KOG0211|consen  388 ASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPI--LPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL  464 (759)
T ss_pred             cccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCcc--CCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence                0000111112111111 333333333333333332211  112233466778888888899999999998777655


Q ss_pred             ccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHH
Q 043950          221 SYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACW  300 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~  300 (458)
                      -...+..-........++.+..+-....+.++....+.+..++....   ..+++...-+.+...+.+. ...++..|+.
T Consensus       465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~  540 (759)
T KOG0211|consen  465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAAR  540 (759)
T ss_pred             HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHH
Confidence            43333222224455678888888887788899999998888875332   3344444566666667666 7789999998


Q ss_pred             HHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHH
Q 043950          301 TISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIV  380 (458)
Q Consensus       301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  380 (458)
                      .+.-++....   ........++.++.....++...|...+.++..++...+.+    +..+.+++.+..+..++.++|+
T Consensus       541 ~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~vanVR  613 (759)
T KOG0211|consen  541 NLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDPVANVR  613 (759)
T ss_pred             HhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCCchhhh
Confidence            8888875211   11112236777777777767888988888888776543322    3445578899999999999999


Q ss_pred             HHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHH
Q 043950          381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET  444 (458)
Q Consensus       381 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  444 (458)
                      .++++.+..+........                .+......++.|..+++.+++.+|......
T Consensus       614 ~nvak~L~~i~~~L~~~~----------------~~~~v~pll~~L~~d~~~dvr~~a~~a~~~  661 (759)
T KOG0211|consen  614 INVAKHLPKILKLLDESV----------------RDEEVLPLLETLSSDQELDVRYRAILAFGS  661 (759)
T ss_pred             hhHHHHHHHHHhhcchHH----------------HHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence            999999999988755432                233345666777778888887766655543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=1.3e-05  Score=76.53  Aligned_cols=288  Identities=17%  Similarity=0.152  Sum_probs=173.8

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCC
Q 043950           73 EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEA  152 (458)
Q Consensus        73 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  152 (458)
                      +...+.. +-+|..|+.++-.+-.-.++....+     +..+-.+|.+.++.+.-.|+.++-.+|-+.-   +.+  .+-
T Consensus       150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn  218 (968)
T KOG1060|consen  150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN  218 (968)
T ss_pred             HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence            3345666 8999999999999988777777644     5777888999999999999999988875431   111  123


Q ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHhhcCC-CCC----------------------------ChhhhhhhHHHHHHhhc
Q 043950          153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQP----------------------------PFDQVRPALPALAQLIH  203 (458)
Q Consensus       153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~----------------------------~~~~~~~~l~~l~~ll~  203 (458)
                      ...+.+.+. +-+.=-+...+.+|...++.. +..                            ...-..-++.....++.
T Consensus       219 yrklC~ll~-dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~  297 (968)
T KOG1060|consen  219 YRKLCRLLP-DVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ  297 (968)
T ss_pred             HHHHHhhcc-chhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence            445555552 222112233334444444332 111                            01112345566677888


Q ss_pred             CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH---------
Q 043950          204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII---------  274 (458)
Q Consensus       204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~---------  274 (458)
                      +.++.+...++.+++.++....  .     .++++.|+++|.++ ..++...+..+..++...+......+         
T Consensus       298 S~n~sVVmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssD  369 (968)
T KOG1060|consen  298 SRNPSVVMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSD  369 (968)
T ss_pred             cCCcHHHHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCC
Confidence            9999999999999999984331  1     24578888877654 34566666666666543322221111         


Q ss_pred             ----------------hc----CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCCh
Q 043950          275 ----------------NH----GAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEF  334 (458)
Q Consensus       275 ----------------~~----~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~  334 (458)
                                      +.    .+++.+...+.+. +..+...|..+|+.++......     ....+.-|+.++.+.+.
T Consensus       370 p~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde  443 (968)
T KOG1060|consen  370 PTQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDE  443 (968)
T ss_pred             HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccc
Confidence                            11    1344444555556 5567778888888887532221     12356678889999899


Q ss_pred             hhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC-HHHHHHHHHHHHHHHH
Q 043950          335 DIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD-PKIVTVCLEGLENILK  392 (458)
Q Consensus       335 ~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-~~v~~~~~~~l~~l~~  392 (458)
                      .|..+++..+..+......+..+.      +..|.++++.-. +.-+...+|.++.++.
T Consensus       444 ~Vv~eaV~vIk~Llq~~p~~h~~i------i~~La~lldti~vp~ARA~IiWLige~~e  496 (968)
T KOG1060|consen  444 LVVAEAVVVIKRLLQKDPAEHLEI------LFQLARLLDTILVPAARAGIIWLIGEYCE  496 (968)
T ss_pred             hhHHHHHHHHHHHHhhChHHHHHH------HHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence            999999999999987655444333      344555554321 2233334454444443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=7.1e-06  Score=76.55  Aligned_cols=329  Identities=16%  Similarity=0.168  Sum_probs=213.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .+..+++-+..+.+++|.....++..+.........     ..+.+.+.+++.... ..-+..+.+.+..+..+  ....
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g--~~i~  168 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNG--LGIE  168 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcC--cHHh
Confidence            466777788888899999999888877543212222     235677888888766 68888899998888874  3445


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHH-HHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVRE-QAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~-~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                      .+.+.+++..+.....+.....++ .+..++...+..- +.....+.  ..++.++... .+..+.++..+..+...+-+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNF-GDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence            556678889999988875443333 3433333333221 11111121  2455555555 56677888888777776655


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950          182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN  261 (458)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~  261 (458)
                      .-   ....+.-++|.++.-+....+.....++..++.++...+.+.. ..-..++|.+.+.|.+..++++..+..++.+
T Consensus       246 ~~---~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  246 CL---SAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK  321 (569)
T ss_pred             hc---CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence            42   1223355566655555555788889999999999877776655 4556799999999999999999999999888


Q ss_pred             hhcCCh-hhHHHHH------------------------------hcCChHHHHHHh----ccCChhhHHHHHHHHHHHhh
Q 043950          262 IVMGDD-FQTQCII------------------------------NHGAVPCLLALL----IHNHKKSIKKVACWTISNIT  306 (458)
Q Consensus       262 l~~~~~-~~~~~~~------------------------------~~~~~~~l~~ll----~~~~~~~v~~~a~~~l~nl~  306 (458)
                      ++..-+ ..++.++                              +..-+..++.++    ... +...++.++.++.|++
T Consensus       322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~  400 (569)
T KOG1242|consen  322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC  400 (569)
T ss_pred             HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence            865211 0111111                              111233333333    333 5678899999999999


Q ss_pred             c--CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC
Q 043950          307 A--GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC  374 (458)
Q Consensus       307 ~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  374 (458)
                      .  .++..+..++. .++|-+-..+.+..+++|..+..+|+.+.+.-...   .+  .+.++.+.+.+..
T Consensus       401 ~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f--~d~~p~l~e~~~~  464 (569)
T KOG1242|consen  401 KLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SF--DDLIPELSETLTS  464 (569)
T ss_pred             HhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cc--cccccHHHHhhcc
Confidence            7  34555544443 26777777777778999999999999998642211   11  4556666666643

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.79  E-value=4.8e-07  Score=80.89  Aligned_cols=271  Identities=16%  Similarity=0.144  Sum_probs=185.1

Q ss_pred             HHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 043950           60 EDVIQAGVVPRFVEFLMREDY-PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVA  137 (458)
Q Consensus        60 ~~~~~~~~i~~L~~ll~~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~  137 (458)
                      +.+...|++..|++++..++. ..++.+|.+.|..+..  .++++.++..| +..++.+-+. ..++.++..+.+|.++.
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            445567899999999999873 2469999999999887  67888888877 6666666554 56788999999999999


Q ss_pred             cCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC-CCCChhhh-hhhHHHHHHhhcCCChHHHHHHHH
Q 043950          138 ADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQV-RPALPALAQLIHLDDEEVLSDACW  215 (458)
Q Consensus       138 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~~~~  215 (458)
                      .++.+....++..|+++.++-.+ ...+|.+.+++..+|.|+..+. ......++ ...-+-+..+-.+.|.-.+..+|-
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence            88877777788999999998888 6777999999999999998775 22333333 344444666666778888999999


Q ss_pred             HHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHH
Q 043950          216 TLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIK  295 (458)
Q Consensus       216 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~  295 (458)
                      +++.++.... ....+..+|-+..+-.++.+-++.          .+++...+..+ --....++.|+.+|++. ..+.+
T Consensus       330 AV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~----------~FARD~hd~aQ-G~~~d~LqRLvPlLdS~-R~EAq  396 (832)
T KOG3678|consen  330 AVAVLATNKE-VEREVRKSGTLALVEPLVASLDPG----------RFARDAHDYAQ-GRGPDDLQRLVPLLDSN-RLEAQ  396 (832)
T ss_pred             HHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcc----------hhhhhhhhhhc-cCChHHHHHhhhhhhcc-hhhhh
Confidence            9999985544 344456666665555555554431          12221111111 11234688899999877 66666


Q ss_pred             HHHHHHHHHhhc-CC-HHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950          296 KVACWTISNITA-GN-REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA  347 (458)
Q Consensus       296 ~~a~~~l~nl~~-~~-~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l  347 (458)
                      ..+++-++.=+. .+ ....+.+.+-|.+..|-++.++.|.--.+.|-.+|.-+
T Consensus       397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            555555544332 11 11223445678999999998877655445555555544

>PF05536 Neurochondrin: Neurochondrin

Probab=98.72  E-value=4.5e-05  Score=73.55  Aligned_cols=382  Identities=15%  Similarity=0.089  Sum_probs=229.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCC--ccHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERS--PRIEDVIQAGVVPRFVEFLMRED------YPQLQYEAAWALTNI   94 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~------~~~i~~~a~~~L~~l   94 (458)
                      ..+...+++|++.+-+-++.++..+.+++...+.  ...+.+.++-+.+.|-++|.+..      ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            4577889999998888889999999999776421  12345778877888889997722      246778899999999


Q ss_pred             cCCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950           95 ASGTSMNTNVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT  173 (458)
Q Consensus        95 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~  173 (458)
                      +. .++....---.+-||.|+..+.+.+. .+..-|+.+|..++ ..+..++.+.+.|.++.+...+.+  .+.....+.
T Consensus        85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al  160 (543)
T PF05536_consen   85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL  160 (543)
T ss_pred             cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence            98 45543211112568999999987666 89999999999999 555667888899999999999954  445678888


Q ss_pred             HHHHHhhcCCCC----CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhh-HHHH----HHhCcHHHHHHHh
Q 043950          174 WTLSKLCKGKPQ----PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDK-IQVV----IEAGVCRRLVELL  244 (458)
Q Consensus       174 ~~l~~l~~~~~~----~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~----~~~~~i~~L~~ll  244 (458)
                      .++.+++.....    ........+++.+...+.......+-.++..+..+....+.. ....    .-..+...+..++
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            888887765431    122233566677777777777777778888888887555311 1111    1123445555666


Q ss_pred             CC-CCccchhhHHHHHhHhhcCChhhHHHHH-hc-----CChHHHHHH---------------hccCChh----------
Q 043950          245 GH-PSPSVLTPALWTVGNIVMGDDFQTQCII-NH-----GAVPCLLAL---------------LIHNHKK----------  292 (458)
Q Consensus       245 ~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~-----~~~~~l~~l---------------l~~~~~~----------  292 (458)
                      .+ ..+.-|..++...+.+.....  .+-++ +.     .++-.++++               .+.+...          
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf  318 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCF  318 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHH
Confidence            55 345566667666666653211  01111 11     111112211               1111001          


Q ss_pred             hHHHHHHHHHHHhhc-----CCHHHHHHHHH--cCChHHHHHHhccC------ChhhHHHHHHHHHHhhcCCCHHHHHHH
Q 043950          293 SIKKVACWTISNITA-----GNREQIQAVID--AGLIVPLVNVLQDA------EFDIKKEAALAIANATVRGTHEQIKYL  359 (458)
Q Consensus       293 ~v~~~a~~~l~nl~~-----~~~~~~~~l~~--~~~~~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~l  359 (458)
                      .+-+.....+.+-..     -.++...++..  .+.+...+.+|...      ++.....++++|+......+....+.+
T Consensus       319 ~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v  398 (543)
T PF05536_consen  319 SILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV  398 (543)
T ss_pred             HHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            111112222222111     12334444432  34555666666432      333667788889888775544444443


Q ss_pred             HHCCChHHHHhhccCCCH----------HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh
Q 043950          360 VREGCIKPLCDLLLCVDP----------KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL  426 (458)
Q Consensus       360 ~~~~~l~~L~~ll~~~~~----------~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  426 (458)
                        .+.++.++.+.+....          +.+...+=+|..+....              ..+..+...||.+.+.+.
T Consensus       399 --~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~--------------~gr~~l~~~~g~~~l~~~  459 (543)
T PF05536_consen  399 --YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEE--------------EGRKILLSNGGWKLLCDD  459 (543)
T ss_pred             --HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccH--------------HHHHHHHhCCcHHHHHHH
Confidence              3688888888764322          23444455555554322              237777778887776643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.5e-05  Score=75.95  Aligned_cols=307  Identities=13%  Similarity=0.184  Sum_probs=203.1

Q ss_pred             hhHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950           18 LQTKLEILPAMVAGVW-SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS   96 (458)
Q Consensus        18 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~   96 (458)
                      ..+.+|.++-+...+. ..++.++.-++..+..+...  .++...+...+++..|+.+|.+.  |..|..++.+|..+++
T Consensus      1766 e~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S 1841 (2235)
T KOG1789|consen 1766 EILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS 1841 (2235)
T ss_pred             hhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc
Confidence            3556677888887777 46789999999998887665  78999999999999999999765  5889999999999999


Q ss_pred             CChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCC---CchhhHHhh----------hCCHHHHHHHhcc
Q 043950           97 GTSMNTNVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADS---PGCRNLVLR----------EEALIPLLAQLNE  162 (458)
Q Consensus        97 ~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~l~~l~~~l~~  162 (458)
                       +++....-.+.|++..+..++- +.++..|.+++..++.+..+.   |..+-.++.          .+.....+..+..
T Consensus      1842 -~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~ 1920 (2235)
T KOG1789|consen 1842 -NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFES 1920 (2235)
T ss_pred             -CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhc
Confidence             6777777778888877777654 577899999999999997543   222111111          0011222222211


Q ss_pred             -cccH------HHHHHHHHHHHHhh----cCC---C--------------------------------------CCChhh
Q 043950          163 -HAKL------SMLRIATWTLSKLC----KGK---P--------------------------------------QPPFDQ  190 (458)
Q Consensus       163 -~~~~------~~~~~a~~~l~~l~----~~~---~--------------------------------------~~~~~~  190 (458)
                       +.+|      ..+......+..+.    ++.   +                                      .....+
T Consensus      1921 T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~F 2000 (2235)
T KOG1789|consen 1921 TSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLF 2000 (2235)
T ss_pred             cCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHH
Confidence             1111      12222222222211    110   0                                      111223


Q ss_pred             hhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChh
Q 043950          191 VRPALPALAQLIHLDD--EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDF  268 (458)
Q Consensus       191 ~~~~l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  268 (458)
                      ..+++..+.+++..++  .........++..+....+...+.+-..|.+|.++..+...+..+-..|+++|..|+. +..
T Consensus      2001 L~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~ 2079 (2235)
T KOG1789|consen 2001 LTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQF 2079 (2235)
T ss_pred             HHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccH
Confidence            3455666666666443  2233333334444444555555656667999999999999888888999999999986 555


Q ss_pred             hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHhccC
Q 043950          269 QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVLQDA  332 (458)
Q Consensus       269 ~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~  332 (458)
                      +.+.+.....+..+++.+...  ....--|+.+|..+.. ...+......+.|.+|.|+.+|...
T Consensus      2080 C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2080 CCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            666676667777788888765  2334477888888775 3445556667899999999999754

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=9.9e-06  Score=68.88  Aligned_cols=274  Identities=14%  Similarity=0.167  Sum_probs=174.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      ...+++++.+.+|.++..|+..+..+...  .-....-.+...++.+.+++.... +  ...|+.++.|++. ....++.
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~~   78 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRKK   78 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHHH
Confidence            45788999999999999999998888554  111111123356888999998887 4  6789999999999 6788888


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhh-----CCHHHHHHHhcc-ccc-HHHHHHHHHHHH
Q 043950          105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLRE-----EALIPLLAQLNE-HAK-LSMLRIATWTLS  177 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~l~~~l~~-~~~-~~~~~~a~~~l~  177 (458)
                      +++. .+..+...+.++...+....+..|.|++.+...+.......     .++..++...-+ +.+ ..-..+...++.
T Consensus        79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            8776 77778888877766777888899999998877665543322     234444444322 222 123455667778


Q ss_pred             HhhcCCCCCChhhhhhhH--HHHHHhhcCCChHHHH-HHHHHHHHhccCChhhHHHHHHh--CcHHHHH-----------
Q 043950          178 KLCKGKPQPPFDQVRPAL--PALAQLIHLDDEEVLS-DACWTLSYLSYGTNDKIQVVIEA--GVCRRLV-----------  241 (458)
Q Consensus       178 ~l~~~~~~~~~~~~~~~l--~~l~~ll~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~--~~i~~L~-----------  241 (458)
                      ++++....+........+  +.+..+-. .+..++. ..+.+|.|+|-... ....+++.  .+++.+.           
T Consensus       158 nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~-~h~~lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  158 NLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAK-LHEVLLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             HHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccch-hHHHHhcchHHHHHHHHhhcCCccccCH
Confidence            887765333332222222  23444444 5666654 46778888774433 22223322  2233322           


Q ss_pred             ----------HHhC-----CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950          242 ----------ELLG-----HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT  306 (458)
Q Consensus       242 ----------~ll~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~  306 (458)
                                +.+.     .+++.++..-+.+|.-||. ....++.+.+.|+.+.+-.+-+...+++++..+-.....+.
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv  314 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV  314 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence                      1121     1345788888999988887 44556777888888888888777757777766555555555


Q ss_pred             cC
Q 043950          307 AG  308 (458)
Q Consensus       307 ~~  308 (458)
                      ..
T Consensus       315 ~~  316 (353)
T KOG2973|consen  315 RL  316 (353)
T ss_pred             hc
Confidence            43

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.67  E-value=2.2e-05  Score=76.46  Aligned_cols=318  Identities=18%  Similarity=0.172  Sum_probs=178.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCC----------CCccHHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIE----------RSPRIEDVIQAGVVPRFVEFLMR-EDYPQLQYEAAWALTN   93 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~----------~~~~~~~~~~~~~i~~L~~ll~~-~~~~~i~~~a~~~L~~   93 (458)
                      .|.++.....+.+.+..+|+.....+..--          .++....+     +...++.|.. ..++++++.|+.+++.
T Consensus       522 s~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m-----~~~tl~rL~a~d~DqeVkeraIscmgq  596 (1233)
T KOG1824|consen  522 SPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTM-----YDCTLQRLKATDSDQEVKERAISCMGQ  596 (1233)
T ss_pred             hhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            455556666777778888877777664321          11112222     2223334433 2348999999999999


Q ss_pred             HcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950           94 IASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT  173 (458)
Q Consensus        94 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~  173 (458)
                      +.....+...... ...++.++.-+  +++-.|-.|+.++..++...-.....-.-..+++.+...+.... ...+...+
T Consensus       597 ~i~~fgD~l~~eL-~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~-r~lr~~~l  672 (1233)
T KOG1824|consen  597 IIANFGDFLGNEL-PRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ-RALRLATL  672 (1233)
T ss_pred             HHHHHhhhhhhhh-HHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            8763222211111 13355555555  56667788999999988654332211112235666777764322 23444445


Q ss_pred             HHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc---
Q 043950          174 WTLSKLCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP---  249 (458)
Q Consensus       174 ~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---  249 (458)
                      .++..|..+. ..........++..+..++...|-.+-..++.++..+....+... .-+...+++.++.+++++--   
T Consensus       673 ~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spllqg~  751 (1233)
T KOG1824|consen  673 TALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPILDEIIRLLRSPLLQGG  751 (1233)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhHHHHHHHhhCccccch
Confidence            5555555443 344555667777778888888888888888888877775554322 12233345555555543310   


Q ss_pred             ---------------------------------------cchhhHHH----HHhHhhcCChhhHHHHHhcCChHHHH-HH
Q 043950          250 ---------------------------------------SVLTPALW----TVGNIVMGDDFQTQCIINHGAVPCLL-AL  285 (458)
Q Consensus       250 ---------------------------------------~~~~~a~~----~l~~l~~~~~~~~~~~~~~~~~~~l~-~l  285 (458)
                                                             .+.+.|..    +.+.++...++...     .....++ ++
T Consensus       752 al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~-----s~a~kl~~~~  826 (1233)
T KOG1824|consen  752 ALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSK-----SLATKLIQDL  826 (1233)
T ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccch-----hHHHHHHHHH
Confidence                                                   11122222    22222222221111     1223333 33


Q ss_pred             hccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043950          286 LIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR  361 (458)
Q Consensus       286 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~  361 (458)
                      .+...+..++..|...++.+-.+....-    ..++...+++.+++++.+++..|.+||++++.+.-+.+..++.+
T Consensus       827 ~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~  898 (1233)
T KOG1824|consen  827 QSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILE  898 (1233)
T ss_pred             hCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHH
Confidence            3334366788899999999987421110    12345577888899999999999999999998776666665544

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=4.7e-05  Score=64.91  Aligned_cols=272  Identities=15%  Similarity=0.145  Sum_probs=177.0

Q ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950          153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI  232 (458)
Q Consensus       153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  232 (458)
                      +..++.++ .+.+|.++..|..-+..++......-.......++.+.+++...++  .+.+..++.|++.... ..+.++
T Consensus         5 l~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll   80 (353)
T KOG2973|consen    5 LVELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLL   80 (353)
T ss_pred             HHHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHH
Confidence            34567777 8889999999998888888762111222235677888899988777  7889999999986544 444455


Q ss_pred             HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH--h----cCChHHHHHHhccCChhhH-HHHHHHHHHHh
Q 043950          233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII--N----HGAVPCLLALLIHNHKKSI-KKVACWTISNI  305 (458)
Q Consensus       233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~----~~~~~~l~~ll~~~~~~~v-~~~a~~~l~nl  305 (458)
                      +. ++..++..+.++........+..++|+++..+.....+.  .    .++++.......++.+... -...+.+++|+
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence            55 888899999988888999999999999987665543333  2    4566666666665533111 23456677777


Q ss_pred             hcCCHHHHHHHHHcCChH--HHHHHhccCChhhH-HHHHHHHHHhhcCCCHHHHHHHHHC--CChHHH------------
Q 043950          306 TAGNREQIQAVIDAGLIV--PLVNVLQDAEFDIK-KEAALAIANATVRGTHEQIKYLVRE--GCIKPL------------  368 (458)
Q Consensus       306 ~~~~~~~~~~l~~~~~~~--~L~~ll~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~l~~~--~~l~~L------------  368 (458)
                      ... +..+..+.+...++  .+.. +.+.+..+| ...+..|.|++...  .....++..  ++++.|            
T Consensus       160 s~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  160 SQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             hhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence            653 34455555433222  2222 233445554 45577788877643  222222221  111111            


Q ss_pred             ---------Hhhcc-----CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh-hcCCChH
Q 043950          369 ---------CDLLL-----CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL-KSHDNNG  433 (458)
Q Consensus       369 ---------~~ll~-----~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~  433 (458)
                               ..++.     .+++.+++..+.+|..++.-..              .++.++.-|+...+..+ .+-++++
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--------------GRe~lR~kgvYpilRElhk~e~ded  301 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--------------GREVLRSKGVYPILRELHKWEEDED  301 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--------------hHHHHHhcCchHHHHHHhcCCCcHH
Confidence                     12232     3578899999999988875333              38899999999999988 5668899


Q ss_pred             HHHHHHHHHHHhcC
Q 043950          434 IREKAVKILETYWC  447 (458)
Q Consensus       434 v~~~a~~~l~~~~~  447 (458)
                      +.+.+.++.+-...
T Consensus       302 ~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  302 IREACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHHHh
Confidence            98888887766555

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.64  E-value=1.2e-06  Score=64.72  Aligned_cols=153  Identities=8%  Similarity=0.010  Sum_probs=123.0

Q ss_pred             hHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHH
Q 043950          279 VPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKY  358 (458)
Q Consensus       279 ~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  358 (458)
                      +..|+.-.....+.+.++....-|+|++.+ |-+...+.+.+++..+++.+..++..+++.++.+|||+|.  ++...+.
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~~   94 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHHH
Confidence            444555555554778899999999999864 4677888899999999999999999999999999999998  6678899


Q ss_pred             HHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHH
Q 043950          359 LVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKA  438 (458)
Q Consensus       359 l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a  438 (458)
                      +.+.++++.++..+.++...++..++..+..+...+..             .+..+-....++.++....+.+.+.+..|
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa  161 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNLA  161 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999999999998888888777766554433             35555566667888877777777788888


Q ss_pred             HHHHHHhcC
Q 043950          439 VKILETYWC  447 (458)
Q Consensus       439 ~~~l~~~~~  447 (458)
                      ...++.+..
T Consensus       162 ~~fl~~~~~  170 (173)
T KOG4646|consen  162 SAFLDKHVH  170 (173)
T ss_pred             HHHHHhhcc
Confidence            888877654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=2.5e-05  Score=67.08  Aligned_cols=304  Identities=13%  Similarity=0.114  Sum_probs=205.1

Q ss_pred             HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHH--HHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950           20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRF--VEFLMREDYPQLQYEAAWALTNIASG   97 (458)
Q Consensus        20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L--~~ll~~~~~~~i~~~a~~~L~~l~~~   97 (458)
                      .+.+.++.++.++-.+|.++-..|...+.+++..  +.....+.+.+....+  ..+-...+ .-.|......+..+.+-
T Consensus       125 vNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSi  201 (524)
T KOG4413|consen  125 VNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSI  201 (524)
T ss_pred             hhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhc
Confidence            3567788999999999999999999999999776  5677777776665433  33434444 46788888899999988


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc-cccHHHHHHHHHH
Q 043950           98 TSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE-HAKLSMLRIATWT  175 (458)
Q Consensus        98 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~  175 (458)
                      +++.....-.+|.+..|..-++. .+.-++.+++.....++... ..++.+.+.|.++.+...+.. +.+|.-...++-.
T Consensus       202 SpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete-HgreflaQeglIdlicnIIsGadsdPfekfralmg  280 (524)
T KOG4413|consen  202 SPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMG  280 (524)
T ss_pred             CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHH
Confidence            89999999999999999988876 67778888888888887543 346778888888888888742 3344433334444


Q ss_pred             HHHhhcCCC------CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCc--HHHHHHHhCCC
Q 043950          176 LSKLCKGKP------QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGV--CRRLVELLGHP  247 (458)
Q Consensus       176 l~~l~~~~~------~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~--i~~L~~ll~~~  247 (458)
                      ...+..+..      ..........+....+++..+|++.++.++.+++.+-++.. ..+.+...|-  .+.++.-..+.
T Consensus       281 fgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte-GadlllkTgppaaehllarafdq  359 (524)
T KOG4413|consen  281 FGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQ  359 (524)
T ss_pred             HHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcc
Confidence            444443321      11112223444556677888999999999999998875443 4454555442  33344333333


Q ss_pred             C-ccchhhHHHHHhHhhcCC---hhh----------HHHHHh-------cCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950          248 S-PSVLTPALWTVGNIVMGD---DFQ----------TQCIIN-------HGAVPCLLALLIHNHKKSIKKVACWTISNIT  306 (458)
Q Consensus       248 ~-~~~~~~a~~~l~~l~~~~---~~~----------~~~~~~-------~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~  306 (458)
                      + ..-+..++++|.+++..-   +++          +..+++       ..-...+..+++.+ .++++-.+..++..++
T Consensus       360 nahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAia  438 (524)
T KOG4413|consen  360 NAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIA  438 (524)
T ss_pred             cccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHH
Confidence            3 334566788888876431   111          111111       13355667778877 8899999999999998


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHh
Q 043950          307 AGNREQIQAVIDAGLIVPLVNVL  329 (458)
Q Consensus       307 ~~~~~~~~~l~~~~~~~~L~~ll  329 (458)
                      .........+.+.+++..+.+.-
T Consensus       439 aqPWalkeifakeefieiVtDas  461 (524)
T KOG4413|consen  439 AQPWALKEIFAKEEFIEIVTDAS  461 (524)
T ss_pred             cCcHHHHHHhcCccceeeecccc
Confidence            77666555555677777666543

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.62  E-value=5.9e-06  Score=76.62  Aligned_cols=336  Identities=14%  Similarity=0.116  Sum_probs=202.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCC-CccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIER-SPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      .+..+++.|++..+.++.+|+.....++.--+ -.....+...|  ..|.+-|.... |++.-..+.+++.+... -..+
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~y-pEvLgsil~Ai~~I~sv-~~~~  680 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDY-PEVLGSILKAICSIYSV-HRFR  680 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCccc-HHHHHHHHHHHHHHhhh-hccc
Confidence            35667788999999999999887776642210 01122233333  34566666666 88887777777666552 1221


Q ss_pred             H-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch---hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950          103 N-VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC---RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK  178 (458)
Q Consensus       103 ~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~  178 (458)
                      . .---.|++|.|...|.+...++..+.+..++.+|...|+.   |+.+.   +--.|+..| .+.+.+++++|..++..
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tfG~  756 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETFGC  756 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhhhh
Confidence            1 1112488999999999999999999999999999887763   22221   334566667 67788999999999999


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950          179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT  258 (458)
Q Consensus       179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  258 (458)
                      +++.-      --+.++..|+.-|+..+...+....-+++-.+....       -..++|.|+.=-.+++..++.-.+.+
T Consensus       757 Is~ai------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLka  823 (975)
T COG5181         757 ISRAI------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKA  823 (975)
T ss_pred             HHhhc------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHH
Confidence            88653      125667777777776655544443334433332211       11345555555556777788877777


Q ss_pred             HhHhhcCChhhH-HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH--HHHHHHcCChHHHHHHhccCChh
Q 043950          259 VGNIVMGDDFQT-QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ--IQAVIDAGLIVPLVNVLQDAEFD  335 (458)
Q Consensus       259 l~~l~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~--~~~l~~~~~~~~L~~ll~~~~~~  335 (458)
                      ++.+...-.+.. +.+  ..+.|.+-+.|.+. |+.-|..|...+..++.+.+..  .+..+.  .+..|..-+-.+.+.
T Consensus       824 m~fmFeyig~~s~dYv--y~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPh  898 (975)
T COG5181         824 MCFMFEYIGQASLDYV--YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPH  898 (975)
T ss_pred             HHHHHHHHHHHHHHHH--HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcH
Confidence            776654332221 222  24677788888888 9989999999999998643221  111111  122222223345666


Q ss_pred             hHHHHHHHHHHhhcC-CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950          336 IKKEAALAIANATVR-GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      +......++-.+... +...         .+..+..-|-++...|++. .|...+++....
T Consensus       899 vi~~~~Eg~e~~~~~lg~g~---------~m~Yv~qGLFHPs~~VRk~-ywtvyn~myv~~  949 (975)
T COG5181         899 VIQSFDEGMESFATVLGSGA---------MMKYVQQGLFHPSSTVRKR-YWTVYNIMYVFD  949 (975)
T ss_pred             HHHHHHHHHHHHHHHhccHH---------HHHHHHHhccCchHHHHHH-HHHHHhhhhhcc
Confidence            655444444333221 1112         2444556667788877654 666666665443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=3.6e-07  Score=83.02  Aligned_cols=305  Identities=12%  Similarity=0.097  Sum_probs=192.2

Q ss_pred             HHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCC
Q 043950          128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDD  206 (458)
Q Consensus       128 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~  206 (458)
                      .++.+|..+++.-...|.-+.+..+.+.|++.+ .+++..+..-+...++|+.-...+. ......+++..++.++.+.|
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            345556666665555666677778889999999 6666556666677777776654333 33444889999999999999


Q ss_pred             hHHHHHHHHHHHHhccCChhh--HHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChh---hHHHHHhc----C
Q 043950          207 EEVLSDACWTLSYLSYGTNDK--IQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDF---QTQCIINH----G  277 (458)
Q Consensus       207 ~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~----~  277 (458)
                      ...+....|.+..+..+.+..  .+ ++..-++..++.+..++...++..++.++.|+.+....   .....++.    -
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~-~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFK-FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhh-hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            999999999999998655433  34 44556789999999999999999999999999874332   12222211    2


Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH-cCChHHHHHHhccC-----------ChhhHHHHHHHHH
Q 043950          278 AVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID-AGLIVPLVNVLQDA-----------EFDIKKEAALAIA  345 (458)
Q Consensus       278 ~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~-----------~~~~~~~a~~~L~  345 (458)
                      +.+.+++.++.. +|-.-...++.|.+++..+.+..+.+.+ ..++..+...+...           ...+-........
T Consensus       566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v  644 (743)
T COG5369         566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV  644 (743)
T ss_pred             HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence            567778888877 7766777799999998755333333332 23343333333211           1111111222233


Q ss_pred             HhhcCCCHHHHHHHHHCCCh--HHHHhhc---cCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH
Q 043950          346 NATVRGTHEQIKYLVREGCI--KPLCDLL---LCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF  420 (458)
Q Consensus       346 ~l~~~~~~~~~~~l~~~~~l--~~L~~ll---~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (458)
                      ++..+.+ .+     +.+..  +.+-.+=   ..++.+......|.+.++.-.....+..    ......++.+.+.|.-
T Consensus       645 ~l~e~~d-~f-----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~~  714 (743)
T COG5369         645 NLSENSD-KF-----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGIR  714 (743)
T ss_pred             ccccccc-cc-----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccHH
Confidence            3332211 11     01111  2222121   1345567777788777743221111100    1122457888899999


Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHh
Q 043950          421 KKIEGLKSHDNNGIREKAVKILETY  445 (458)
Q Consensus       421 ~~l~~l~~~~~~~v~~~a~~~l~~~  445 (458)
                      +-++.++.++++.|++++-.++..+
T Consensus       715 e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         715 EWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhh
Confidence            9999999999999999999988764

>TIGR02270 conserved hypothetical protein

Probab=98.60  E-value=2.6e-05  Score=72.06  Aligned_cols=241  Identities=16%  Similarity=0.027  Sum_probs=162.3

Q ss_pred             cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           24 ILPAMVAGVW-SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        24 ~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +++.++..+. .+++.+...++.++...   + ..        ..+..|++.+.+.+ +.++..++..|+.+-..     
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~-----  116 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQ---E-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGGR-----  116 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhcc---C-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCch-----
Confidence            3566677774 45566666555554322   1 11        13788888888887 78999999888865542     


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                            ...+.|+.++.+.++.++..++.+++...            ....+.+...+ ++.++.++..++.++..+-..
T Consensus       117 ------~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       117 ------QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             ------HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                  44688888888888888888887776621            11345677777 688888999999999887543


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950          183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI  262 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l  262 (458)
                                ..++.|...+.+.++.++..++.++..+-.  ..         ....+..+...........+..++...
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      455667778889999999999988876632  21         223444433333333333333333222


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHH
Q 043950          263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL  342 (458)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~  342 (458)
                        ..         ...++.|..+++.+   .++..++++++.+-.  +         ..++.|+..+...  .++..|..
T Consensus       237 --~~---------~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p---------~av~~L~~~l~d~--~~aR~A~e  289 (410)
T TIGR02270       237 --GG---------PDAQAWLRELLQAA---ATRREALRAVGLVGD--V---------EAAPWCLEAMREP--PWARLAGE  289 (410)
T ss_pred             --Cc---------hhHHHHHHHHhcCh---hhHHHHHHHHHHcCC--c---------chHHHHHHHhcCc--HHHHHHHH
Confidence              11         14677888888765   489999999997742  2         3688888888754  49999999


Q ss_pred             HHHHhhc
Q 043950          343 AIANATV  349 (458)
Q Consensus       343 ~L~~l~~  349 (458)
                      ++..++-
T Consensus       290 A~~~ItG  296 (410)
T TIGR02270       290 AFSLITG  296 (410)
T ss_pred             HHHHhhC
Confidence            9999974

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=5.9e-07  Score=81.64  Aligned_cols=286  Identities=14%  Similarity=0.204  Sum_probs=189.2

Q ss_pred             HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 043950           59 IEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA  138 (458)
Q Consensus        59 ~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  138 (458)
                      +.-+.+..+.+.|+++|+.++ ..+..-+...++|..-..+..+..+.+.|++..|+.++.+.+..++.+..|.+.++..
T Consensus       424 RTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmy  502 (743)
T COG5369         424 RTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMY  502 (743)
T ss_pred             HhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence            334556788999999999987 6777778888999888788889999999999999999999999999999999999986


Q ss_pred             CCCch-hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC--CChhhh------hhhHHHHHHhhcCCChHH
Q 043950          139 DSPGC-RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ--PPFDQV------RPALPALAQLIHLDDEEV  209 (458)
Q Consensus       139 ~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~------~~~l~~l~~ll~~~~~~~  209 (458)
                      +.... +-.....-++..++... +++.-.++..+...+.|+..+...  ......      .-+...++..+...+|-.
T Consensus       503 ncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~  581 (743)
T COG5369         503 NCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPME  581 (743)
T ss_pred             cCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchh
Confidence            65432 22345566788888888 777888999999999999875311  111111      235666777788888777


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHHh-CcHHHHHHHh----CC-------CCccchhhHHHHHhHhhcCChhhHHHHHhcC
Q 043950          210 LSDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVELL----GH-------PSPSVLTPALWTVGNIVMGDDFQTQCIINHG  277 (458)
Q Consensus       210 ~~~~~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~ll----~~-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  277 (458)
                      ....+..+.+++..++.....+.+. .++..+..+|    ..       .+..+...-.....++....+...+.+....
T Consensus       582 i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p  661 (743)
T COG5369         582 ILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTP  661 (743)
T ss_pred             hhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCC
Confidence            7777888888886665544444333 3444444433    22       1112222223333334332222211111001


Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHHhhc---CC------HHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950          278 AVPCLLALLIHNHKKSIKKVACWTISNITA---GN------REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA  347 (458)
Q Consensus       278 ~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~---~~------~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l  347 (458)
                      -.+..-+- ....+.+.-.+..|.+.|+.-   +.      .+.++.+.+.|+-+.+......+++.+++.+-.+|.++
T Consensus       662 ~~D~~~~d-~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         662 HLDNMKKD-STTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             Cccccccc-cCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            11111000 111144577788888888653   22      25566677888888888877888889999999999887

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.55  E-value=3.9e-05  Score=70.10  Aligned_cols=314  Identities=16%  Similarity=0.078  Sum_probs=194.3

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc-ccHHHHHHHHHHHHHhhcCCCCCChh
Q 043950          111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH-AKLSMLRIATWTLSKLCKGKPQPPFD  189 (458)
Q Consensus       111 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~  189 (458)
                      .+.+..++-+++.++|..+.+++..+..+.... ..+.+.+.-..++.-+..+ ....=+.+|+..++.+..... ....
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc
Confidence            344443444445999999999999998776554 3445555544555555433 334457789988888877632 2334


Q ss_pred             hhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh
Q 043950          190 QVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ  269 (458)
Q Consensus       190 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~  269 (458)
                      ...+++..++....+.+...+..++.+++.++-.+++.   +...|++..+.+.+.++..++....+.++..+.. ++..
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~t  180 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRT  180 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccch
Confidence            46888999999999999999999999999999766643   6788999999999988666677788888888875 4555


Q ss_pred             HHHHHhcCChHHHHHHhccC------Chh--hHHHHHHHHHHHhhcCCHHHHHHHH-Hc-CChHHHHHHhccCChhhHHH
Q 043950          270 TQCIINHGAVPCLLALLIHN------HKK--SIKKVACWTISNITAGNREQIQAVI-DA-GLIVPLVNVLQDAEFDIKKE  339 (458)
Q Consensus       270 ~~~~~~~~~~~~l~~ll~~~------~~~--~v~~~a~~~l~nl~~~~~~~~~~l~-~~-~~~~~L~~ll~~~~~~~~~~  339 (458)
                      ++.+...--++.++.-+.+.      .+.  +.-..+..++..+.+.= ...-.+. +. ..+..|++.|..++++++..
T Consensus       181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW-~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSW-PGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcC-CceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            55555433444444444322      022  23344555555554421 1111112 11 47888999999999999999


Q ss_pred             HHHHHHHhhcCCCHHHHHHH------HHCCCh---HHHHhhccCCC---HHHHHHHHHHHHHHHHhchhhcccCCCCCch
Q 043950          340 AALAIANATVRGTHEQIKYL------VREGCI---KPLCDLLLCVD---PKIVTVCLEGLENILKVGEAEKNTGSTIGDV  407 (458)
Q Consensus       340 a~~~L~~l~~~~~~~~~~~l------~~~~~l---~~L~~ll~~~~---~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~  407 (458)
                      .+..+..+..-..+.....+      ...|-.   ..+..-.....   +.....-...+.++..               
T Consensus       260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a---------------  324 (371)
T PF14664_consen  260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA---------------  324 (371)
T ss_pred             HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH---------------
Confidence            99999999765433221111      111111   00110000000   0000011122222211               


Q ss_pred             hHHHHHHHhcchHHHHHhhhcCC-ChHHHHHHHHHHHHhcC
Q 043950          408 NQYARLVEEDEGFKKIEGLKSHD-NNGIREKAVKILETYWC  447 (458)
Q Consensus       408 ~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~  447 (458)
                       -....|.++|.++.|..+..+. ++.+..+|--++..++.
T Consensus       325 -Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  325 -LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             -HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence             1355667999999999996665 88899999988887653

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=2e-05  Score=80.60  Aligned_cols=379  Identities=13%  Similarity=0.094  Sum_probs=211.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CChhhHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS-GTSMNTN  103 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~  103 (458)
                      ...+...+.+++|..|..++.-|..+...-+...........+...+.++|.+.+ +..|..|.+.|+-+-. ++...++
T Consensus       820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~  898 (1702)
T KOG0915|consen  820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK  898 (1702)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence            3455566778999999876544444433332233333334456688999999888 7889999888775543 2233333


Q ss_pred             HHHhCCChHHHHHhhCCC---------CHHHHH-------------HHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc
Q 043950          104 VVIDHGAVPIFVKLLASP---------SDDVRE-------------QAVWALGNVAADSPGCRNLVLREEALIPLLAQLN  161 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~---------~~~~~~-------------~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~  161 (458)
                      .+     +..|+.-|..+         +.++.+             .+..-|.||+.+-.       +-..+-..+++.+
T Consensus       899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAn  966 (1702)
T KOG0915|consen  899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLAN  966 (1702)
T ss_pred             HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhh
Confidence            33     34444433221         111111             12223444443211       1112344555554


Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHH
Q 043950          162 EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV  241 (458)
Q Consensus       162 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~  241 (458)
                      .+..-..+.-|+..+..++.............++|.|.++=-+++..++.....+-..+...+........ ..+++-|+
T Consensus       967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL 1045 (1702)
T KOG0915|consen  967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELL 1045 (1702)
T ss_pred             hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHH
Confidence            44444455556666777766543334445577778887777788888876655554445544444444333 35888888


Q ss_pred             HHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHH---HHHHHHhhc-----CCHHHH
Q 043950          242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVA---CWTISNITA-----GNREQI  313 (458)
Q Consensus       242 ~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a---~~~l~nl~~-----~~~~~~  313 (458)
                      .-+.+..+.+|+.+|.++..|..+.+.....-.-..++..+...+.+- ...||+.|   +.+++-++.     .+....
T Consensus      1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred             HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence            889999999999999999999987653311110013344444444444 45677655   444554442     112222


Q ss_pred             HHHHHcCChHHHHH--HhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHH-HHHHHHHH
Q 043950          314 QAVIDAGLIVPLVN--VLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV-CLEGLENI  390 (458)
Q Consensus       314 ~~l~~~~~~~~L~~--ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~-~~~~l~~l  390 (458)
                      +..++ .++|.|++  .+ +.-+++|..++..+..++.........++.  ..++.|.+....-++.|... ++.+ .++
T Consensus      1125 ~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~-~~~ 1199 (1702)
T KOG0915|consen 1125 KEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL-INI 1199 (1702)
T ss_pred             HHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-hhh
Confidence            22222 25555554  23 556899999999999999876654444432  25677777777666665544 3443 222


Q ss_pred             H-HhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHH
Q 043950          391 L-KVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIR  435 (458)
Q Consensus       391 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~  435 (458)
                      - ...+.            ........+-.++.|..+.++-|..+-
T Consensus      1200 e~ealDt------------~R~s~aksspmmeTi~~ci~~iD~~vL 1233 (1702)
T KOG0915|consen 1200 ETEALDT------------LRASAAKSSPMMETINKCINYIDISVL 1233 (1702)
T ss_pred             HHHHHHH------------HHHhhhcCCcHHHHHHHHHHhhhHHHH
Confidence            1 11111            113333444456777777666655543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=7.5e-05  Score=70.12  Aligned_cols=222  Identities=14%  Similarity=0.119  Sum_probs=149.3

Q ss_pred             HHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC---h--hhHHH
Q 043950          156 LLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT---N--DKIQV  230 (458)
Q Consensus       156 l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~---~--~~~~~  230 (458)
                      ++.+. ++.|..++.+|...+-.|...     ......+....++.+.+.+..++..|+..++-.....   .  +..+.
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg-----~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEG-----FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhccc-----ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 777888899999988888763     2233556677888999999999998866554443221   1  11111


Q ss_pred             HHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC--
Q 043950          231 VIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG--  308 (458)
Q Consensus       231 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~--  308 (458)
                      -.....+..+...+.+-+..+|..|...||.+-.-+++...+.++..++..+-..-.....+    .+...=+.++++  
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrp----k~l~s~GewSsGk~  352 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRP----KALYSSGEWSSGKE  352 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccch----HHHHhcCCcccCcc
Confidence            11224788899999999999999999999998776666665555544444222111111011    111111111111  


Q ss_pred             ---------CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHH
Q 043950          309 ---------NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI  379 (458)
Q Consensus       309 ---------~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  379 (458)
                               ..+.-..++..|.-..++.-+.++-.+||.+|...++.++... +.+...     .+..|++++.++...|
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~~~V  426 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEIEVV  426 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHHHHH
Confidence                     1122344667888888999999989999999999999998853 344333     4889999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 043950          380 VTVCLEGLENILKV  393 (458)
Q Consensus       380 ~~~~~~~l~~l~~~  393 (458)
                      +..++.+|..|...
T Consensus       427 RL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  427 RLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998875

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.48  E-value=6.5e-06  Score=60.87  Aligned_cols=127  Identities=17%  Similarity=0.170  Sum_probs=108.3

Q ss_pred             HhhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950           20 TKLEILPAMVAGVW-SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT   98 (458)
Q Consensus        20 ~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~   98 (458)
                      ...+.+..|+.-.+ ..+.+.+......|.|++-+  +.+...+.+..++..++..+..++ +.+.+.++..|+|+|. +
T Consensus        13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~-d   88 (173)
T KOG4646|consen   13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCL-D   88 (173)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhcc-C
Confidence            34556777776555 56788888888999999776  678888999999999999999999 8999999999999999 5


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhh
Q 043950           99 SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLRE  150 (458)
Q Consensus        99 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  150 (458)
                      +.+...+.+.+++|.++..+.++...+...++.++..++......++.+...
T Consensus        89 ~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p  140 (173)
T KOG4646|consen   89 KTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP  140 (173)
T ss_pred             hHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence            8889999999999999999999999999999999999987766666666543

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=0.00015  Score=74.53  Aligned_cols=343  Identities=17%  Similarity=0.139  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 043950           37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK  116 (458)
Q Consensus        37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  116 (458)
                      ..-+..|+.-+..++...+..  .+-.-..+||.|.+.=-+++ +.+|.....+...+..++....+.... .+++-|+.
T Consensus       971 wnSk~GaAfGf~~i~~~a~~k--l~p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen  971 WNSKKGAAFGFGAIAKQAGEK--LEPYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred             hhcccchhhchHHHHHHHHHh--hhhHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence            444555666666665543111  11222347888888877888 899998888888888865555554443 55777777


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhcCCCch--hhHHhhhCCHHHHHHHhcccccHHHHHHH---HHHHHHhhcCC-----CCC
Q 043950          117 LLASPSDDVREQAVWALGNVAADSPGC--RNLVLREEALIPLLAQLNEHAKLSMLRIA---TWTLSKLCKGK-----PQP  186 (458)
Q Consensus       117 ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~a---~~~l~~l~~~~-----~~~  186 (458)
                      -+.+.--.+|+.++.+|..|..+.|..  .+.+.  .....+++.+ ++-.+.++..+   +.+++.+|-..     +..
T Consensus      1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred             hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence            777788899999999999999887642  12221  1333444444 44445566654   45556555432     122


Q ss_pred             ChhhhhhhHHHHHH-hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhh-HHHH------
Q 043950          187 PFDQVRPALPALAQ-LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP-ALWT------  258 (458)
Q Consensus       187 ~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~-a~~~------  258 (458)
                      .......++|.+.. -+-+.-++++.-++.++..++........... ..+++.|+.....-++.+... +++.      
T Consensus      1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred             HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHH
Confidence            22333444444432 11255689999999999999977765443222 246666666665544433221 2222      


Q ss_pred             ----Hh-HhhcCChhh--HHHHH-------hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHH
Q 043950          259 ----VG-NIVMGDDFQ--TQCII-------NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVP  324 (458)
Q Consensus       259 ----l~-~l~~~~~~~--~~~~~-------~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~  324 (458)
                          +. +.+...|..  +...+       -...+|.+.++++++..-..|..++..++-++......+... ....+..
T Consensus      1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~a 1281 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRA 1281 (1702)
T ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHH
Confidence                11 111111100  00111       123566677777666455566666666666653110111100 0124556


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950          325 LVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       325 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~  393 (458)
                      ++..+.+.++.+++....|.+.++...++++.+.+.+    ..+..++...++ ....++..+.+|..+
T Consensus      1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es-~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE----TLLADLLGKDES-LKSISCATISNIANY 1345 (1702)
T ss_pred             HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHHHHhccCCC-ccchhHHHHHHHHHh
Confidence            6666777899999999999999999988888777544    223333333222 224445555544443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.44  E-value=3.9e-05  Score=65.59  Aligned_cols=238  Identities=16%  Similarity=0.178  Sum_probs=146.9

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHH
Q 043950          196 PALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCI  273 (458)
Q Consensus       196 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~  273 (458)
                      ..+-.+++.-++-.+.-+.+|+.++......+.-...+.-.-..++.++++  +..+++...+.+++-++. ++...+-+
T Consensus       152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi  230 (432)
T COG5231         152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDI  230 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHH
Confidence            344455555566677888899998886555444444444455677777776  356788889999988875 44333221


Q ss_pred             H-hcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHhccC---ChhhHHHHHHHHHHhh
Q 043950          274 I-NHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVLQDA---EFDIKKEAALAIANAT  348 (458)
Q Consensus       274 ~-~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~---~~~~~~~a~~~L~~l~  348 (458)
                      - ....+..++.+.+.....+|-+-++.++.|++. .....+..+.-.|-+.+-++.|...   |.+++...-..=..+.
T Consensus       231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~  310 (432)
T COG5231         231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV  310 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            1 124566777777766467888899999999987 3334444444434334445555432   5555433322222221


Q ss_pred             cCC---------------------C--------HHHHHHHHHC--CChHHHHhhccCCCHH-HHHHHHHHHHHHHHhchh
Q 043950          349 VRG---------------------T--------HEQIKYLVRE--GCIKPLCDLLLCVDPK-IVTVCLEGLENILKVGEA  396 (458)
Q Consensus       349 ~~~---------------------~--------~~~~~~l~~~--~~l~~L~~ll~~~~~~-v~~~~~~~l~~l~~~~~~  396 (458)
                      ...                     .        ......+.+.  ..++.|..+++..++. ....|+.-+..+.+..++
T Consensus       311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE  390 (432)
T COG5231         311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE  390 (432)
T ss_pred             hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence            110                     0        0122222222  2366677777766554 344556666666665554


Q ss_pred             hcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          397 EKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      .             ...+...|+.+.|.+|++|++++|+-.|.+.++.+..
T Consensus       391 ~-------------~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         391 I-------------NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             H-------------HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            3             7778899999999999999999999999998887754

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=0.00058  Score=64.87  Aligned_cols=297  Identities=12%  Similarity=0.098  Sum_probs=184.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED-YPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      +..+.+-|.+.|+....-|+.++.++.+.   +..+.+     -+.+-++|-+++ .+-++..|+.+|..+...+|+.. 
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~-  183 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV-  183 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence            44555666688888889999999988553   222222     222225555443 24678889999988888655532 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-------c---------cccHH
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-------E---------HAKLS  167 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-------~---------~~~~~  167 (458)
                        -..+..+.++++|.+.+..+...+...+.-++...|+..     .+.++.-+..+.       .         -+.|=
T Consensus       184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW  256 (938)
T KOG1077|consen  184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY-----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW  256 (938)
T ss_pred             --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH-----hhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence              223567889999988888888888888888876665432     223333333331       1         12344


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC----CC---hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHH
Q 043950          168 MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL----DD---EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRL  240 (458)
Q Consensus       168 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~----~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L  240 (458)
                      +....+..|.++-.............++..+....+.    .+   ...+..++.-..+++.+-+...+.+.  ..+..|
T Consensus       257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~L  334 (938)
T KOG1077|consen  257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQL  334 (938)
T ss_pred             HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHH
Confidence            5555666666652221222233334555555554441    11   23344445544555544333333333  357889


Q ss_pred             HHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 043950          241 VELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAG  320 (458)
Q Consensus       241 ~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~  320 (458)
                      .+++.+.+..+|.-|+..+..++.... ....+-.+  .+.++..|+...|..+|+.|+..|..+|-.  ++.+.     
T Consensus       335 g~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~-----  404 (938)
T KOG1077|consen  335 GQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ-----  404 (938)
T ss_pred             HHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----
Confidence            999999999999999999999987533 22333333  788999999665999999999999999852  22222     


Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                      ++.-+++.|.+.++.+|++...=.+-+++
T Consensus       405 IV~elLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  405 IVAELLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            55667888888888888777665555554

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.43  E-value=2.4e-05  Score=66.83  Aligned_cols=231  Identities=15%  Similarity=0.175  Sum_probs=153.7

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH-hCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhh
Q 043950           73 EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI-DHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLR  149 (458)
Q Consensus        73 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  149 (458)
                      ++++.-+ +-.+.-|++++.++.. .++.|...- +...-..+...+++  +..+++.+.+.+++-++... .+.+.+-.
T Consensus       156 kl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K  232 (432)
T COG5231         156 KLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDK  232 (432)
T ss_pred             HHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHH
Confidence            3444444 5678889999999998 577776554 44455667777766  56889999999999887554 33333222


Q ss_pred             -hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCC--hhhhhhhHHHHHHhhc---CCChHHHHHHHHHHHHhccC
Q 043950          150 -EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP--FDQVRPALPALAQLIH---LDDEEVLSDACWTLSYLSYG  223 (458)
Q Consensus       150 -~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~~~  223 (458)
                       ...+..+++.......+.+.+-++.++.|++...|...  .....+-+...++.+.   -.|.+++...-..=..+...
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence             23456666666555667789999999999998543221  1222332333334443   23555544433222222211


Q ss_pred             Chh------------------------------hHHHHHH--hCcHHHHHHHhCCCCcc-chhhHHHHHhHhhcCChhhH
Q 043950          224 TND------------------------------KIQVVIE--AGVCRRLVELLGHPSPS-VLTPALWTVGNIVMGDDFQT  270 (458)
Q Consensus       224 ~~~------------------------------~~~~~~~--~~~i~~L~~ll~~~~~~-~~~~a~~~l~~l~~~~~~~~  270 (458)
                      ...                              +...+.+  ..++..|.++++..++. ....||.-++.+.+..|+..
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~  392 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN  392 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence            110                              1111221  24788999999987766 56678899999999999999


Q ss_pred             HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          271 QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       271 ~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      ..+.+.|+=+.++++++++ +++||-+|..++..+..
T Consensus       393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            9999999999999999999 99999999999887653

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.41  E-value=0.00018  Score=66.04  Aligned_cols=250  Identities=28%  Similarity=0.319  Sum_probs=176.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      ..++.+.+.+.+++..++..|+..+..+...            ..++.+..++.+.+ +.+|..|+.+|+.+-..     
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~-----  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP-----  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh-----
Confidence            4688889999999999999999987666332            36899999999999 89999999988887762     


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccccc---------H--HHHH
Q 043950          103 NVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAK---------L--SMLR  170 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~---------~--~~~~  170 (458)
                            ..++.++.++. +.+..+|..+.++|+.+-..           ..+.+++..+.+...         +  .++.
T Consensus       105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                  34788999888 58999999999999998322           236677777743221         1  2444


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCcc
Q 043950          171 IATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPS  250 (458)
Q Consensus       171 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  250 (458)
                      .+...+..+-.          ....+.+..++.+.+..++..+..+++.+....         ..+.+.+...+.+++..
T Consensus       168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            45555544432          345677888888888889999999888886443         23557788888888888


Q ss_pred             chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc
Q 043950          251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ  330 (458)
Q Consensus       251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~  330 (458)
                      ++..++..++.+-..           ...+.+...+... +..++..+.......  ...         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence            898888888776431           2456677777776 666665555544411  111         12444555566


Q ss_pred             cCChhhHHHHHHHHHHhhc
Q 043950          331 DAEFDIKKEAALAIANATV  349 (458)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~  349 (458)
                      +.+..++..+..++.....
T Consensus       286 ~~~~~~~~~~~~~l~~~~~  304 (335)
T COG1413         286 DEANAVRLEAALALGQIGQ  304 (335)
T ss_pred             cchhhHHHHHHHHHHhhcc
Confidence            6677777777777776654

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.35  E-value=0.00063  Score=63.16  Aligned_cols=352  Identities=13%  Similarity=0.103  Sum_probs=203.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC---HHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 043950           35 DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY---PQLQYEAAWALTNIASGTSMNTNVVIDHGAV  111 (458)
Q Consensus        35 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i  111 (458)
                      .++-.|.+|+..|.++-..+      .+    ....+++.+..+..   +.....-+++...+...+++.+..+     .
T Consensus       202 ~~~isqYHalGlLyq~kr~d------km----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----r  266 (898)
T COG5240         202 GNPISQYHALGLLYQSKRTD------KM----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----R  266 (898)
T ss_pred             CChHHHHHHHHHHHHHhccc------HH----HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----H
Confidence            35677888888887763321      12    12344444443321   2223334455566666666666555     4


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhh
Q 043950          112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV  191 (458)
Q Consensus       112 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  191 (458)
                      |.|-..+++....+.-.+++.+..++...-.  ....+ ..+..|-.+| .++....+..|+.+|..++...|..    +
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~k----v  338 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQK----V  338 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCce----e
Confidence            7777788777777888888888887754311  11111 1344444445 6777788999999999998876533    2


Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHH
Q 043950          192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ  271 (458)
Q Consensus       192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  271 (458)
                      ..+-+.+-.++.+.+..+...|+..|..-  +.++.+..     ++..+..++.+-+...+.-+..++..|+-.-+....
T Consensus       339 ~vcN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idr-----Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~  411 (898)
T COG5240         339 SVCNKEVESLISDENRTISTYAITTLLKT--GTEETIDR-----LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL  411 (898)
T ss_pred             eecChhHHHHhhcccccchHHHHHHHHHc--CchhhHHH-----HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence            23334455677777878877777777554  33333332     234444444443444444444444444443343322


Q ss_pred             HHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCC
Q 043950          272 CIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG  351 (458)
Q Consensus       272 ~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  351 (458)
                      .     .+..|...|......+.++.+..+++.+....|+....     ++..|+..+.+.  +..+-+...|+-+-..+
T Consensus       412 s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDc--ey~~I~vrIL~iLG~Eg  479 (898)
T COG5240         412 S-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDC--EYHQITVRILGILGREG  479 (898)
T ss_pred             H-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhc--chhHHHHHHHHHhcccC
Confidence            2     24445554443336788888888888887755444333     455677777643  23333444555444332


Q ss_pred             CHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCC
Q 043950          352 THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDN  431 (458)
Q Consensus       352 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  431 (458)
                      ....    -...++.++.+-+--++.-|+..|..+|.++.-..+....           .+     .....+.+.+++.+
T Consensus       480 P~a~----~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~-----------~~-----sv~~~lkRclnD~D  539 (898)
T COG5240         480 PRAK----TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS-----------PQ-----SVENALKRCLNDQD  539 (898)
T ss_pred             CCCC----CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc-----------HH-----HHHHHHHHHhhccc
Confidence            1100    0112356666666667888999999999887644333210           11     22456778899999


Q ss_pred             hHHHHHHHHHHHHhcCC
Q 043950          432 NGIREKAVKILETYWCG  448 (458)
Q Consensus       432 ~~v~~~a~~~l~~~~~~  448 (458)
                      ++|+.+|.-.+..+-..
T Consensus       540 deVRdrAsf~l~~~~~~  556 (898)
T COG5240         540 DEVRDRASFLLRNMRLS  556 (898)
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999888776433

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.35  E-value=0.00011  Score=67.18  Aligned_cols=238  Identities=16%  Similarity=0.145  Sum_probs=171.5

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC--ccchhhHHHHHhHhhcCChhh
Q 043950          192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS--PSVLTPALWTVGNIVMGDDFQ  269 (458)
Q Consensus       192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~  269 (458)
                      ....+.+..++-+++.+++..+.+++..+..... ..+.+.+.++--.++..|..++  ..-|+.|+..+..+.......
T Consensus        24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~  102 (371)
T PF14664_consen   24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP  102 (371)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence            4555666656666669999999999999985554 4566778787777777777643  346778999998887653211


Q ss_pred             HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                       + .+..+++..++.+..+. +...+..|..+++.++-.+|+   .+...|++..|.+.+.++..++....+.++..+..
T Consensus       103 -~-~~~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd  176 (371)
T PF14664_consen  103 -K-EIPRGVVRALVAIAEHE-DDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD  176 (371)
T ss_pred             -c-cCCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence             1 23457899999999998 888999999999999987765   45688999999999988777788889999999986


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhccC-------CCH--HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH
Q 043950          350 RGTHEQIKYLVREGCIKPLCDLLLC-------VDP--KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF  420 (458)
Q Consensus       350 ~~~~~~~~~l~~~~~l~~L~~ll~~-------~~~--~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (458)
                        .+..++++...--++.++.-+.+       .+.  +-...+..++..+++.....-            .-...+..++
T Consensus       177 --~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl------------~l~~~~~~~l  242 (371)
T PF14664_consen  177 --SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL------------YLSMNDFRGL  242 (371)
T ss_pred             --CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee------------eeecCCchHH
Confidence              44555655443334444433321       222  356677888888888776642            1122233578


Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhcCCCC
Q 043950          421 KKIEGLKSHDNNGIREKAVKILETYWCGRV  450 (458)
Q Consensus       421 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  450 (458)
                      +.|.+.+..+++++++....++-..|.-..
T Consensus       243 ksLv~~L~~p~~~ir~~Ildll~dllrik~  272 (371)
T PF14664_consen  243 KSLVDSLRLPNPEIRKAILDLLFDLLRIKP  272 (371)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence            888888899999999998888887776543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=0.0002  Score=68.38  Aligned_cols=319  Identities=14%  Similarity=0.064  Sum_probs=159.6

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCH
Q 043950           74 FLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEAL  153 (458)
Q Consensus        74 ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l  153 (458)
                      =|++++ +-+|-..++.|+.+-.  ++...     ..+|.+...|.....-+|++|..++..|-....   ..+.  .+.
T Consensus       107 DLQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~p--Dap  173 (948)
T KOG1058|consen  107 DLQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLIP--DAP  173 (948)
T ss_pred             hccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhcC--ChH
Confidence            346677 6777777777777654  44333     457888899999999999999999888854421   1111  233


Q ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHH
Q 043950          154 IPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIE  233 (458)
Q Consensus       154 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  233 (458)
                      ..+-..+....|+..+++|.-.|...-..   .    .-..+...+.-+.+-++..+......+...+..++..     .
T Consensus       174 eLi~~fL~~e~DpsCkRNAFi~L~~~D~E---r----Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~-----~  241 (948)
T KOG1058|consen  174 ELIESFLLTEQDPSCKRNAFLMLFTTDPE---R----ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE-----K  241 (948)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHhcCHH---H----HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH-----h
Confidence            33344455667787888877655443211   0    0011111111112223444444444444444322221     1


Q ss_pred             hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH---------------------------------hcCChH
Q 043950          234 AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII---------------------------------NHGAVP  280 (458)
Q Consensus       234 ~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~---------------------------------~~~~~~  280 (458)
                      ...+..+..+|.+.++.++-.|..++-+++. .+...+...                                 -.|.+-
T Consensus       242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~m  320 (948)
T KOG1058|consen  242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIM  320 (948)
T ss_pred             hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHH
Confidence            2344555566655555555555555444432 111111100                                 012233


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh-cc------CChhhHHHHHHHHHHhhcCCCH
Q 043950          281 CLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL-QD------AEFDIKKEAALAIANATVRGTH  353 (458)
Q Consensus       281 ~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll-~~------~~~~~~~~a~~~L~~l~~~~~~  353 (458)
                      .++.+|.++ +.++|+.+......++.+  .++..     ++..|-.=+ +.      .+.+.|...+.++..++.... 
T Consensus       321 DvLrvLss~-dldvr~Ktldi~ldLvss--rNved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-  391 (948)
T KOG1058|consen  321 DVLRVLSSP-DLDVRSKTLDIALDLVSS--RNVED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-  391 (948)
T ss_pred             HHHHHcCcc-cccHHHHHHHHHHhhhhh--ccHHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-
Confidence            334444444 555555555555555431  11111     111111111 11      122334555555555544321 


Q ss_pred             HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHH-HhhhcCCCh
Q 043950          354 EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKI-EGLKSHDNN  432 (458)
Q Consensus       354 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~  432 (458)
                      +..     ..+++.|++.+.+.++..-...+..+...++..++.             +..+     ++++ +.+-.=.+.
T Consensus       392 ~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L-------------r~~i-----i~~l~~~~~~irS~  448 (948)
T KOG1058|consen  392 EVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL-------------RASI-----IEKLLETFPQIRSS  448 (948)
T ss_pred             HHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH-------------HHHH-----HHHHHHhhhhhccc
Confidence            211     234677777777777766666666666666655543             1111     2222 222223456


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 043950          433 GIREKAVKILETYWCGRV  450 (458)
Q Consensus       433 ~v~~~a~~~l~~~~~~~~  450 (458)
                      +++.-|.|++..|.+++.
T Consensus       449 ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  449 KICRGALWILGEYCEGLS  466 (948)
T ss_pred             ccchhHHHHHHHHHhhhH
Confidence            788899999999988765

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.32  E-value=0.0012  Score=62.36  Aligned_cols=347  Identities=16%  Similarity=0.124  Sum_probs=202.5

Q ss_pred             HHHHHHhhcCCCH---HHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           25 LPAMVAGVWSDDN---SLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        25 i~~l~~~l~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      +|.++..|..+++   ......+.+|..++..  ..-.+.+.. .++..+...++.....+....++.++..+.....+.
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence            3677777876554   5667788888888664  232333222 556666666654444667777888888776633322


Q ss_pred             H-----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc--------
Q 043950          102 T-----NVVIDHGAVPIFVKLLAS-----P--SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN--------  161 (458)
Q Consensus       102 ~-----~~~~~~~~i~~L~~ll~~-----~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~--------  161 (458)
                      .     ....+..+++.+..+...     .  +..+-..+...+..+...-+.-++.    ..+..+...+.        
T Consensus        78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~----~~~~~~~~lf~~~~~~~~~  153 (415)
T PF12460_consen   78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQ----EILDELYSLFLSPKSFSPF  153 (415)
T ss_pred             cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHHHHHccccccCCC
Confidence            2     233344477777776633     1  2455566666666665544332221    12334444432        


Q ss_pred             --ccc-----cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCC--hhhHHHH
Q 043950          162 --EHA-----KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGT--NDKIQVV  231 (458)
Q Consensus       162 --~~~-----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~--~~~~~~~  231 (458)
                        ...     ......-...++..+-   +..........+..++.+.. ..++..+..++.+++.++..-  ++...  
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~--  228 (415)
T PF12460_consen  154 QPSSSTISEQQSRLVILFSAILCSLR---KDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD--  228 (415)
T ss_pred             CccccccccccccHHHHHHHHHHcCC---cccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH--
Confidence              010     1111222223333332   33333344557777777655 445888888899888888442  22112  


Q ss_pred             HHhCcHHHHHHHh-CCCCccchhhHHHHHhHh----h-cCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950          232 IEAGVCRRLVELL-GHPSPSVLTPALWTVGNI----V-MGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI  305 (458)
Q Consensus       232 ~~~~~i~~L~~ll-~~~~~~~~~~a~~~l~~l----~-~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl  305 (458)
                         +++..+.... .......+..++.++..+    . ++++.. .     ..++.+++++.+   +++...++.++.-+
T Consensus       229 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~-----~~~~~L~~lL~~---~~~g~~aA~~f~il  296 (415)
T PF12460_consen  229 ---EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-T-----ELLDKLLELLSS---PELGQQAAKAFGIL  296 (415)
T ss_pred             ---HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-H-----HHHHHHHHHhCC---hhhHHHHHHHHhhH
Confidence               2344444444 333444444544444333    2 333322 2     356778888875   47788888888888


Q ss_pred             hcCCHHH--------HHHHHHc----CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950          306 TAGNREQ--------IQAVIDA----GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL  373 (458)
Q Consensus       306 ~~~~~~~--------~~~l~~~----~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  373 (458)
                      ....+..        ++.+.+.    .++|.|++.....+.+.+..-+.||.++..+-.......-. ..+++.+++.++
T Consensus       297 ~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~  375 (415)
T PF12460_consen  297 LSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLS  375 (415)
T ss_pred             hcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhC
Confidence            8753322        2223332    36777888777777778999999999999876544322211 247888899999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhchh
Q 043950          374 CVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       374 ~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      .++++++..++.++..++...+.
T Consensus       376 ~~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  376 LPDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCHH
Confidence            99999999999999999876543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.32  E-value=0.0012  Score=64.90  Aligned_cols=139  Identities=14%  Similarity=0.067  Sum_probs=96.9

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950           26 PAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVV  105 (458)
Q Consensus        26 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  105 (458)
                      |.+++.+.+.|.++..---..|.+.+...+   ...+   -.++.+.+=+++++ +.+|..|++.++.+-.  ++...  
T Consensus        58 ~dViK~~~trd~ElKrL~ylYl~~yak~~P---~~~l---LavNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~--  126 (757)
T COG5096          58 PDVIKNVATRDVELKRLLYLYLERYAKLKP---ELAL---LAVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG--  126 (757)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhccCH---HHHH---HHHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH--
Confidence            333444444444444444444445544321   1111   14777888889999 9999999999987755  33332  


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          106 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       106 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                         .+++.+.+++.++++.||..|+.++.++-.-++.   ...+.|.+..+..++ .+.+|.+..+|+.++..+...
T Consensus       127 ---~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 ---NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ---HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence               3478999999999999999999999999765543   455666666666666 889999999999999998765

>TIGR02270 conserved hypothetical protein

Probab=98.30  E-value=0.00029  Score=65.25  Aligned_cols=209  Identities=19%  Similarity=0.083  Sum_probs=154.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      +..+++.|.+.++.++..++.+|..+-.            ....+.|+.++++.+ +.++..++.+++....        
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~~~~-p~vR~aal~al~~r~~--------  146 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLAASE-PPGRAIGLAALGAHRH--------  146 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhcCCC-hHHHHHHHHHHHhhcc--------
Confidence            7889999999999999999999987621            135788999999888 8999988877776332        


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC
Q 043950          105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP  184 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~  184 (458)
                          ...+.+..+|++.++.++..++.+|+.+...           ..++.|...+ .+.++.++..+.+++..+-.   
T Consensus       147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al-~d~~~~VR~aA~~al~~lG~---  207 (410)
T TIGR02270       147 ----DPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYL-RDSDPEVRFAALEAGLLAGS---  207 (410)
T ss_pred             ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHH-cCCCHHHHHHHHHHHHHcCC---
Confidence                2357899999999999999999999998432           2455566666 88999999999999977632   


Q ss_pred             CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950          185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM  264 (458)
Q Consensus       185 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~  264 (458)
                             ....+.+..+....+.........++...  ..+         ..++.|..+++++.  ++..++.+++.+-.
T Consensus       208 -------~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~  267 (410)
T TIGR02270       208 -------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD  267 (410)
T ss_pred             -------HhHHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence                   23344555544444444444444444333  111         45678888888755  89999999987743


Q ss_pred             CChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       265 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                                 ...++.|+..+..+   .+++.|..++..++.
T Consensus       268 -----------p~av~~L~~~l~d~---~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       268 -----------VEAAPWCLEAMREP---PWARLAGEAFSLITG  296 (410)
T ss_pred             -----------cchHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence                       35788899999755   499999999999986

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.28  E-value=4.9e-05  Score=76.09  Aligned_cols=270  Identities=15%  Similarity=0.127  Sum_probs=175.3

Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CChh
Q 043950           25 LPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS---GTSM  100 (458)
Q Consensus        25 i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~---~~~~  100 (458)
                      ++.+...+.+ .....+..|+..|..++..-..+    ..-..++|.++.++.++. .++|..|+.+|..+..   +-+.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----VKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----HHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4445444443 34678889999988886653222    222358999999999999 8999999999988765   2222


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc------------------CCCch---hhHHhhh------CC
Q 043950          101 NTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAA------------------DSPGC---RNLVLRE------EA  152 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~------------------~~~~~---~~~~~~~------~~  152 (458)
                      .-..++..-++|.|-+++.+ ....+|-.-+..|+.|+.                  +.++.   .+.-.+.      ..
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~  578 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT  578 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence            33334445668888888887 444455444445554442                  11111   0000000      02


Q ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950          153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI  232 (458)
Q Consensus       153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  232 (458)
                      +..++.-|..++++-+++..+..+.-||.-.  .......-+++.|+.+|++.|+.++..-...+..++-.-..+   -+
T Consensus       579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~  653 (1431)
T KOG1240|consen  579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SV  653 (1431)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eH
Confidence            3333333335555667777777777776432  112223567888999999999999988887777666322211   13


Q ss_pred             HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      +..++|.|.+-|.++++.|...|+.++.-|+...--....+.  .+++.+..+|-++ +.-+|+.++..|...+.
T Consensus       654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999874433323332  4677778888888 88999999999988875

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.28  E-value=1.7e-06  Score=51.35  Aligned_cols=41  Identities=44%  Similarity=0.853  Sum_probs=38.2

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 043950           98 TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA  138 (458)
Q Consensus        98 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  138 (458)
                      ++++++.+++.|++|.|++++.++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.0034  Score=59.92  Aligned_cols=288  Identities=18%  Similarity=0.205  Sum_probs=171.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      +..+.+=|.+.+ +....-|+.+++|+.+  .+.+..+.. . ++   ++|.+  ...-++..++.+|..+.+..|+.  
T Consensus       113 in~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~~-D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl--  182 (938)
T KOG1077|consen  113 INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFAD-D-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL--  182 (938)
T ss_pred             HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhhh-h-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence            444555556666 6778889999999987  455554432 1 33   55555  34678889999999998887663  


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-------------CCChHHHHH
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-------------LDDEEVLSD  212 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-------------~~~~~~~~~  212 (458)
                       +...+....++.+| ++.+..+...+...+.-++...+..........+..+.....             -+.|-.+..
T Consensus       183 -~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK  260 (938)
T KOG1077|consen  183 -VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK  260 (938)
T ss_pred             -cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence             22234577888888 555566777777777777777654444434444444433332             134667788


Q ss_pred             HHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC--Ccc-----chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHH
Q 043950          213 ACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP--SPS-----VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLAL  285 (458)
Q Consensus       213 ~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l  285 (458)
                      +++.|.+.-...+.... ..-..+++.++.....+  ...     .+...++-.-+++..-+..-..+.  ..+..|-++
T Consensus       261 l~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f  337 (938)
T KOG1077|consen  261 LLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF  337 (938)
T ss_pred             HHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence            88888777422221111 11112233333333311  111     122223323334333332223222  457788889


Q ss_pred             hccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCC
Q 043950          286 LIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-DAEFDIKKEAALAIANATVRGTHEQIKYLVREGC  364 (458)
Q Consensus       286 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~  364 (458)
                      +.+. +..+|.-|...++.++... ...+. ++.. ...++..|+ ..|..+|+.|+..|..++..++   .+.+     
T Consensus       338 ls~r-E~NiRYLaLEsm~~L~ss~-~s~da-vK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N---ak~I-----  405 (938)
T KOG1077|consen  338 LSHR-ETNIRYLALESMCKLASSE-FSIDA-VKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN---AKQI-----  405 (938)
T ss_pred             hhcc-cccchhhhHHHHHHHHhcc-chHHH-HHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh---HHHH-----
Confidence            9888 8889999999999888642 22222 2222 667888888 6699999999999999986543   3332     


Q ss_pred             hHHHHhhccCCCHHHHHH
Q 043950          365 IKPLCDLLLCVDPKIVTV  382 (458)
Q Consensus       365 l~~L~~ll~~~~~~v~~~  382 (458)
                      +..+..++.+.+..+++-
T Consensus       406 V~elLqYL~tAd~siree  423 (938)
T KOG1077|consen  406 VAELLQYLETADYSIREE  423 (938)
T ss_pred             HHHHHHHHhhcchHHHHH
Confidence            455666777666655543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.25  E-value=2.4e-06  Score=50.72  Aligned_cols=41  Identities=27%  Similarity=0.543  Sum_probs=37.3

Q ss_pred             ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       266 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      +++..+.+++.|+++.|+++|.++ ++.++++|+|+|+|+++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            356778899999999999999988 99999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=6.3e-05  Score=70.60  Aligned_cols=253  Identities=16%  Similarity=0.132  Sum_probs=163.4

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHH---HHHhhcCC---CCC
Q 043950          113 IFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWT---LSKLCKGK---PQP  186 (458)
Q Consensus       113 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~---l~~l~~~~---~~~  186 (458)
                      -+..+..+.+..++.+|+.+|..+.....- ...     .....++++ .+.+..++..|...   +.|.+-.+   ...
T Consensus       202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  202 GLIYLEHDQDFRVRTHAVEGLLALSEGFKL-SKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhcccccc-cHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            366667777777888887777777653211 111     244566667 66777888888544   45554211   222


Q ss_pred             ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC-
Q 043950          187 PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG-  265 (458)
Q Consensus       187 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~-  265 (458)
                      .......++..+...+.+....++..+..+++.+-..+.+......+.+++..+-+.-...   -+-..+..=+..+++ 
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCc
Confidence            3344477888889999999999999999999988776666665555555444322211100   011111111111111 


Q ss_pred             ----------ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChh
Q 043950          266 ----------DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFD  335 (458)
Q Consensus       266 ----------~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~  335 (458)
                                .++....++.+|.-..++.-|.++ =.+||+.|...++.++..+|.....     .+..|+++++++...
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~  425 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEV  425 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHH
Confidence                      223345567788888889989877 7899999999999999866554332     577899999999999


Q ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHH
Q 043950          336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLE  388 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~  388 (458)
                      ||..|+.+|..++....       +++..++.+...+.+.++++++.....|.
T Consensus       426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLK  471 (823)
T ss_pred             HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999976421       23334666667777777777665554444

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.23  E-value=1.3e-05  Score=69.15  Aligned_cols=186  Identities=17%  Similarity=0.217  Sum_probs=117.2

Q ss_pred             hCCCCccchhhHHHHHhHhhcCC--hhhHHHHHh--cCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 043950          244 LGHPSPSVLTPALWTVGNIVMGD--DFQTQCIIN--HGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDA  319 (458)
Q Consensus       244 l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~--~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~  319 (458)
                      -.+.++..+..++..|..++.++  ......+.+  ..++..+...+.+. ...+...|+.++..++......+....+ 
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-   93 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-   93 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence            35678889999999999998766  222222221  15667788888877 8889999999999998643333444444 


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcc
Q 043950          320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKN  399 (458)
Q Consensus       320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~  399 (458)
                      .++|.|+..+.+...-++..|..+|..++...+..  ..+    ....+.....++++.++..++..+..++........
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS--PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH--HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            47899999999988899999999999999875411  110    155677788999999999999999999887662110


Q ss_pred             cCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          400 TGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      .      ... ...+  ....+.+....++++++|++.|...+..|+
T Consensus       168 ~------l~~-~~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  168 V------LQK-SAFL--KQLVKALVKLLSDADPEVREAARECLWALY  205 (228)
T ss_dssp             G------G---HHHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred             h------hcc-cchH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence            0      000 0001  223677888899999999999999888774

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF05536 Neurochondrin: Neurochondrin

Probab=98.23  E-value=0.00013  Score=70.39  Aligned_cols=238  Identities=13%  Similarity=0.042  Sum_probs=167.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh---HHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHh
Q 043950           67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN---TNVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNV  136 (458)
Q Consensus        67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l  136 (458)
                      .+..-+.+|+..+ .+-+..++..+.++....+..   ++.+.+.=+.+.+-++|.+       +....+.-++.+|+.+
T Consensus         6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3667788899888 688999999999999865532   3346777668999999987       3467888899999999


Q ss_pred             hcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHH
Q 043950          137 AADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWT  216 (458)
Q Consensus       137 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~  216 (458)
                      |.+.. ....-.-.+-+|.+++.+..+.+..+...+..+|..++..+.........+.++.+.+.+.+ .+...+.++.+
T Consensus        85 ~~~~~-~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   85 CRDPE-LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             cCChh-hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            88543 22111112468999999966666689999999999999776555555668999999999887 66667888888


Q ss_pred             HHHhccCChh-hHH--HHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh-----HHHHHhcCChHHHHHHhcc
Q 043950          217 LSYLSYGTND-KIQ--VVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ-----TQCIINHGAVPCLLALLIH  288 (458)
Q Consensus       217 l~~l~~~~~~-~~~--~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~~~~~l~~ll~~  288 (458)
                      +.+++..... ...  .-.-..+++.+...+.......+...+..|+.+....+..     ...-.-..+...+..++++
T Consensus       163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            8887743331 100  0001145666777777777778888999999987655311     1112223456667777877


Q ss_pred             CChhhHHHHHHHHHHHhhc
Q 043950          289 NHKKSIKKVACWTISNITA  307 (458)
Q Consensus       289 ~~~~~v~~~a~~~l~nl~~  307 (458)
                      ...+.-|..+....+.+..
T Consensus       243 r~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            7677778777777777764

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.22  E-value=0.00043  Score=65.43  Aligned_cols=270  Identities=15%  Similarity=0.103  Sum_probs=172.7

Q ss_pred             CccHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-----
Q 043950           56 SPRIEDVIQAGVVPRFVEFL---------MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP-----  121 (458)
Q Consensus        56 ~~~~~~~~~~~~i~~L~~ll---------~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----  121 (458)
                      ......+....++..|.++-         ....++.+..+|++||+|+...++..++.+.+.|+.+.++..++..     
T Consensus        12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~   91 (446)
T PF10165_consen   12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ   91 (446)
T ss_pred             cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence            44555666666667776665         3333479999999999999999999999999999999999999875     


Q ss_pred             CHHHHHHHHHHHHHhhcCCCchhhHHhhh-CCHHHHHHHhcc---------c-------ccHHHHHHHHHHHHHhhcCCC
Q 043950          122 SDDVREQAVWALGNVAADSPGCRNLVLRE-EALIPLLAQLNE---------H-------AKLSMLRIATWTLSKLCKGKP  184 (458)
Q Consensus       122 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~l~~~l~~---------~-------~~~~~~~~a~~~l~~l~~~~~  184 (458)
                      +.++.-...+.|--++...+..+..+.+. +++..+...+..         .       .+......++..+.|+....+
T Consensus        92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~  171 (446)
T PF10165_consen   92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP  171 (446)
T ss_pred             ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence            67888888888888887777766655554 666666665531         0       134456677888889887764


Q ss_pred             CCCh----hhhhhhHHHHHHhh---cC--CChHHHHHHHHHHHHhccCChhh-----------HHHHHHhCcHHHHHHHh
Q 043950          185 QPPF----DQVRPALPALAQLI---HL--DDEEVLSDACWTLSYLSYGTNDK-----------IQVVIEAGVCRRLVELL  244 (458)
Q Consensus       185 ~~~~----~~~~~~l~~l~~ll---~~--~~~~~~~~~~~~l~~l~~~~~~~-----------~~~~~~~~~i~~L~~ll  244 (458)
                      ....    .....++..+..++   .+  +.......++.+|.|+--.....           .........+..|+.+|
T Consensus       172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L  251 (446)
T PF10165_consen  172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL  251 (446)
T ss_pred             cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence            4332    22244444444442   11  22456677777777773111110           00011223556666665


Q ss_pred             CC-----CC---ccchhhHHHHHhHhhcCChhhHHHHHh----------------cCChHHHHHHhccCChhhHHHHHHH
Q 043950          245 GH-----PS---PSVLTPALWTVGNIVMGDDFQTQCIIN----------------HGAVPCLLALLIHNHKKSIKKVACW  300 (458)
Q Consensus       245 ~~-----~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~l~~ll~~~~~~~v~~~a~~  300 (458)
                      ..     ..   .......+.+|.+++..+...++.+..                ..+-..|+.++.++ .+.+|..++.
T Consensus       252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae  330 (446)
T PF10165_consen  252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE  330 (446)
T ss_pred             HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence            43     11   234556777888888766555444432                24667789999998 6999999999


Q ss_pred             HHHHhhcCCHHHHHHHHHcCChHHHHHHh
Q 043950          301 TISNITAGNREQIQAVIDAGLIVPLVNVL  329 (458)
Q Consensus       301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll  329 (458)
                      .+..+|..+   ...+++.-+...-..+|
T Consensus       331 llf~Lc~~d---~~~~v~~~GyG~AaG~L  356 (446)
T PF10165_consen  331 LLFVLCKED---ASRFVKYVGYGNAAGFL  356 (446)
T ss_pred             HHHHHHhhh---HHHHHHHcCchhHHHHH
Confidence            999998543   34444433333333333

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.22  E-value=0.00036  Score=64.10  Aligned_cols=249  Identities=24%  Similarity=0.272  Sum_probs=169.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      ..++.+.+++.+.+ ..++..+++.++.+...           ..++.+..++.+.++.+|..++.+|+.+-.       
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------  103 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGD-------  103 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------
Confidence            46889999999997 89999999997776652           458999999999999999999998888721       


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCh------------HHHHHH
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDE------------EVLSDA  213 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~------------~~~~~~  213 (458)
                          ...++.++..+..+.+..++..+.++|..+-..          ..+..++..+.+...            .++..+
T Consensus       104 ----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         104 ----PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                125788999996578889999999999998653          235566666665542            234444


Q ss_pred             HHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhh
Q 043950          214 CWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKS  293 (458)
Q Consensus       214 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~  293 (458)
                      ...++.+-           +...++.+...+.+....++..+..+++.+...+         ..+.+.+...+.++ +..
T Consensus       170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            44444332           2234567777788877788888888888876544         23456677777777 888


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950          294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL  373 (458)
Q Consensus       294 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  373 (458)
                      +|..++.+++.+-...           .+..++..+.+.+..++..+..++...-   ..         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALGALD---LA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhcccC---ch---------hhHHHHHHHhh
Confidence            8888888888774321           4566777777777776666555555110   00         11333444455


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 043950          374 CVDPKIVTVCLEGLENIL  391 (458)
Q Consensus       374 ~~~~~v~~~~~~~l~~l~  391 (458)
                      +.+..++..+...+..+.
T Consensus       286 ~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         286 DEANAVRLEAALALGQIG  303 (335)
T ss_pred             cchhhHHHHHHHHHHhhc
Confidence            555556655555555443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.0046  Score=61.46  Aligned_cols=339  Identities=17%  Similarity=0.132  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhc------CCC-CHHHHHHHHHHHHHHcC---CChhhHHHHHhCC
Q 043950           40 QLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLM------RED-YPQLQYEAAWALTNIAS---GTSMNTNVVIDHG  109 (458)
Q Consensus        40 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~------~~~-~~~i~~~a~~~L~~l~~---~~~~~~~~~~~~~  109 (458)
                      ..+|...+..+++..+.+..     .++++.++..+.      .++ ++.-..-|++++++++.   .....+ ..++.-
T Consensus       389 ~~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~f  462 (1010)
T KOG1991|consen  389 DTAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYF  462 (1010)
T ss_pred             cHHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHH
Confidence            34556666666554322222     256777777776      222 24566778888888875   112222 222333


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCC--
Q 043950          110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP--  187 (458)
Q Consensus       110 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~--  187 (458)
                      +++.+...++++.-.+|..|+|+++.++..+-.....  -..++....+.+.++++-.++..|+.+|..+.++.+...  
T Consensus       463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~  540 (1010)
T KOG1991|consen  463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK  540 (1010)
T ss_pred             HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh
Confidence            4566667778888999999999999998543222222  233677777788668888899999999999998864332  


Q ss_pred             -hhhhhhhHHHHHHhhcCCChHHHHHHHHHH-HHhccCChhhHHHHHHhCcHHHHHHHhCC---CCccc---hhhHHHHH
Q 043950          188 -FDQVRPALPALAQLIHLDDEEVLSDACWTL-SYLSYGTNDKIQVVIEAGVCRRLVELLGH---PSPSV---LTPALWTV  259 (458)
Q Consensus       188 -~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~---~~~a~~~l  259 (458)
                       ...+.+.++.+..+.+.-+.+....++..+ +..+..-......+.+ .+...+.+++.+   .++..   ...|.++|
T Consensus       541 ~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL  619 (1010)
T KOG1991|consen  541 VSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGIL  619 (1010)
T ss_pred             HhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence             233356666666676665555555555443 3333221111221222 355666777764   22222   22333333


Q ss_pred             hHhh------cCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950          260 GNIV------MGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE  333 (458)
Q Consensus       260 ~~l~------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~  333 (458)
                      ..+.      ...++..+. ++..+++.+-.+|++. -.++-++++..+.++....++--..++.  +++.+.+.+....
T Consensus       620 ~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~  695 (1010)
T KOG1991|consen  620 RTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDG  695 (1010)
T ss_pred             HHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhh
Confidence            3332      122323222 2345677777777777 6777788888887776544333333444  7788888888888


Q ss_pred             hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh----hccC---CCHHHHHHHHHHHHHHHHhch
Q 043950          334 FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCD----LLLC---VDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       334 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~----ll~~---~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      .+.-...+-+|-|.+..+......   .......+.+    ++.+   .+++ ...+++++..++-...
T Consensus       696 ~dyf~d~~~~l~N~vt~g~~~~~s---~~~y~~il~~i~~~~l~~e~~~D~d-~~~a~kLle~iiL~~k  760 (1010)
T KOG1991|consen  696 IDYFTDMMPALHNYVTYGTPSLLS---NPDYLQILLEIIKKVLTSENGEDSD-CESACKLLEVIILNCK  760 (1010)
T ss_pred             HHHHHHHHHHHhhheeeCchhhhc---cchHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHhc
Confidence            888888999999998877543321   1222333333    3333   2333 3456777777665433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.20  E-value=6.1e-05  Score=75.42  Aligned_cols=298  Identities=18%  Similarity=0.129  Sum_probs=184.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc---CCCch
Q 043950           67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA---DSPGC  143 (458)
Q Consensus        67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~  143 (458)
                      +++.+...+.+-...+.+..|+..|..++....+   ...=..++|.++.++.++..+||..|+.+|..+..   +-+..
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            3556666665544467789999999888872211   11112568999999999999999999999887763   22222


Q ss_pred             hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHH-----HHHhhcCCChHHHHHHHHHHH
Q 043950          144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA-----LAQLIHLDDEEVLSDACWTLS  218 (458)
Q Consensus       144 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-----l~~ll~~~~~~~~~~~~~~l~  218 (458)
                      ...+...-.+|.|-.++.++....++...+..|..|+...        .+++..     ...+++..+.+          
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--------~rFle~~q~~~~~g~~n~~nse----------  561 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--------YRFLELTQELRQAGMLNDPNSE----------  561 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--------HHHHHHHHHHHhcccccCcccc----------
Confidence            2223222344444444433344445555556666665321        111111     11123333322          


Q ss_pred             Hhc-cCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHH
Q 043950          219 YLS-YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKV  297 (458)
Q Consensus       219 ~l~-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~  297 (458)
                      ... ...+...+.+. .++-+....++.++++-|++.-+..|.-||..-....   -+.-+++.|+..|++. |+.+|..
T Consensus       562 t~~~~~~~~~~~~L~-~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDk-Dw~LR~a  636 (1431)
T KOG1240|consen  562 TAPEQNYNTELQALH-HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDK-DWRLRGA  636 (1431)
T ss_pred             cccccccchHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCc-cHHHHHH
Confidence            011 11111222222 2345566777887787888888888888875332111   1234788899999999 9999887


Q ss_pred             HHHHHHHhhc--CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 043950          298 ACWTISNITA--GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV  375 (458)
Q Consensus       298 a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~  375 (458)
                      -...|.-++.  +..     -++..++|.|.+-|.++.+-|...|+.++..|++.+-   .+...-...++....+|-++
T Consensus       637 FfdsI~gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---l~K~~v~~i~~~v~PlL~hP  708 (1431)
T KOG1240|consen  637 FFDSIVGVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---LRKPAVKDILQDVLPLLCHP  708 (1431)
T ss_pred             HHhhccceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---cchHHHHHHHHhhhhheeCc
Confidence            7777775553  211     1234588999999999999999999999999998642   22222223566667788899


Q ss_pred             CHHHHHHHHHHHHHHHHhchhhc
Q 043950          376 DPKIVTVCLEGLENILKVGEAEK  398 (458)
Q Consensus       376 ~~~v~~~~~~~l~~l~~~~~~~~  398 (458)
                      +.-++..++..|..+.+.....+
T Consensus       709 N~WIR~~~~~iI~~~~~~ls~ad  731 (1431)
T KOG1240|consen  709 NLWIRRAVLGIIAAIARQLSAAD  731 (1431)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999988877665544

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.17  E-value=0.00022  Score=70.33  Aligned_cols=351  Identities=15%  Similarity=0.110  Sum_probs=218.2

Q ss_pred             hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC------------------
Q 043950           19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY------------------   80 (458)
Q Consensus        19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------------   80 (458)
                      ....+.+|.+.++...+..+++..|...+..+...-+.+.  . ....+.+.+++...++.+                  
T Consensus       272 ~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d-~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~  348 (759)
T KOG0211|consen  272 IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--D-VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG  348 (759)
T ss_pred             HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--h-hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc
Confidence            3445667777777777777777777777776665432221  1 111234444444444431                  


Q ss_pred             --------------------HHHHHHHHHHHHHHcC-CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 043950           81 --------------------PQLQYEAAWALTNIAS-GTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD  139 (458)
Q Consensus        81 --------------------~~i~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  139 (458)
                                          .+.+..++.-...++. .+.+....+..+.++|.+-.+..+.+..++...+.....+..-
T Consensus       349 ~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~  428 (759)
T KOG0211|consen  349 PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPI  428 (759)
T ss_pred             cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCcc
Confidence                                2333333332222222 1111222233445567777777777777777666555555432


Q ss_pred             CCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 043950          140 SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLS  218 (458)
Q Consensus       140 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~  218 (458)
                      .+..+.   -....+.++..+ ++..+.++.+..|.+..+-...+.. ........+|.+..+-....+.++..+++.+.
T Consensus       429 ~~k~~t---i~~llp~~~~~l-~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip  504 (759)
T KOG0211|consen  429 LPKERT---ISELLPLLIGNL-KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIP  504 (759)
T ss_pred             CCcCcC---ccccChhhhhhc-chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHH
Confidence            221111   112345555555 7778889999998886665544332 33344778888888888888999999999988


Q ss_pred             HhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhccCChhhHHHH
Q 043950          219 YLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKKSIKKV  297 (458)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~  297 (458)
                      .++....  .. +.+...-+.+...+.+...+++..|...+..++.... ++.    ....++.++.+...+ +...|..
T Consensus       505 ~la~q~~--~~-~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~----~~~~i~k~L~~~~q~-~y~~R~t  576 (759)
T KOG0211|consen  505 QLALQLG--VE-FFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA----RLEEIPKLLAMDLQD-NYLVRMT  576 (759)
T ss_pred             HHHHhhh--hH-HhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh----HHHhhHHHHHHhcCc-ccchhhH
Confidence            8874433  22 4444455556666666677899999998888876433 111    124677788887776 7888888


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCH
Q 043950          298 ACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDP  377 (458)
Q Consensus       298 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  377 (458)
                      .+.++.-++.-   .-+.+....++|.+.++..+..+.||..++..|..+...-...    ..+..+.+.+..+.++++.
T Consensus       577 ~l~si~~la~v---~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~----~~~~~v~pll~~L~~d~~~  649 (759)
T KOG0211|consen  577 TLFSIHELAEV---LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES----VRDEEVLPLLETLSSDQEL  649 (759)
T ss_pred             HHHHHHHHHHH---hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH----HHHHHHHHHHHHhccCccc
Confidence            88888877741   1123334458899999999999999999999999997654433    2344456666667777888


Q ss_pred             HHHHHHHHHHHHHH
Q 043950          378 KIVTVCLEGLENIL  391 (458)
Q Consensus       378 ~v~~~~~~~l~~l~  391 (458)
                      +++..+..+...+.
T Consensus       650 dvr~~a~~a~~~i~  663 (759)
T KOG0211|consen  650 DVRYRAILAFGSIE  663 (759)
T ss_pred             chhHHHHHHHHHHH
Confidence            88888777766554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.13  E-value=4.7e-05  Score=65.66  Aligned_cols=189  Identities=16%  Similarity=0.112  Sum_probs=119.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCC-CCccHHHHHHc--CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 043950           33 WSDDNSLQLEATTQFRILLSIE-RSPRIEDVIQA--GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG  109 (458)
Q Consensus        33 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~--~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~  109 (458)
                      .+.+...+..|+..|..++.+. .......+.+.  .++..+...+.+.. ..+...|+.++..++.......+..+ ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            5678999999999999998764 12222222221  56677778888777 68899999999998874333333332 25


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC-CCh
Q 043950          110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ-PPF  188 (458)
Q Consensus       110 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~  188 (458)
                      ++|.|+..+.++...+++.|..+|..++...+....      .+..++.....+.++.++..++..+..+....+. ...
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            689999999999999999999999999876541111      2234444444888999999999999888776541 111


Q ss_pred             ----hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHH
Q 043950          189 ----DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQ  229 (458)
Q Consensus       189 ----~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~  229 (458)
                          .....+.+.+...+.+.+++++..+-.++..+....++...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence                11356888899999999999999999999888755444443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.0066  Score=60.37  Aligned_cols=399  Identities=13%  Similarity=0.094  Sum_probs=188.7

Q ss_pred             ccHHHHHHhhc------C--CCHHHHHHHHHHHHHHhcCC-CCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 043950           23 EILPAMVAGVW------S--DDNSLQLEATTQFRILLSIE-RSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTN   93 (458)
Q Consensus        23 ~~i~~l~~~l~------~--~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~   93 (458)
                      +.++-+++.++      .  .++.....|++.+..+++.- +....+...+.=+++.++..++++. -.+|..|||+++.
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQ  488 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHH
Confidence            34555566666      2  23444555666666665321 1233334445556777777888888 7999999999999


Q ss_pred             HcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhh--hCCHHHHHHHhcccccHHHHH
Q 043950           94 IASGTSMNTNVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLR--EEALIPLLAQLNEHAKLSMLR  170 (458)
Q Consensus        94 l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~  170 (458)
                      ++..  +..+...-..++....+.+. +..-.++-.|+.+|..+..+.+.....+..  .+.++.++.+.+ ..+.+...
T Consensus       489 ~~~~--df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n-e~End~Lt  565 (1010)
T KOG1991|consen  489 FSSI--DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN-EVENDDLT  565 (1010)
T ss_pred             HHhc--cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH-hcchhHHH
Confidence            9952  22222222244566666665 677788888999999998776654332222  123444444442 22222222


Q ss_pred             HHHH-HHHHhhcCCCCCChhhhhhhHHHHHHhhcC---C---ChHHHHHHHHHHHHhc------cCChhhHHHHHHhCcH
Q 043950          171 IATW-TLSKLCKGKPQPPFDQVRPALPALAQLIHL---D---DEEVLSDACWTLSYLS------YGTNDKIQVVIEAGVC  237 (458)
Q Consensus       171 ~a~~-~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~---~---~~~~~~~~~~~l~~l~------~~~~~~~~~~~~~~~i  237 (458)
                      .+.. .++.++..-..-.......+.....+++..   .   +.+-...|..+|..+.      ...++..+ -++.-++
T Consensus       566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l  644 (1010)
T KOG1991|consen  566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVL  644 (1010)
T ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence            2222 233333332222333334444555555552   1   1222223333333322      11111111 1122234


Q ss_pred             HHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC------------------hhhHHH---
Q 043950          238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH------------------KKSIKK---  296 (458)
Q Consensus       238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~------------------~~~v~~---  296 (458)
                      +.+-..+++.-.++-+.++.....+....++..-.+.  ++++.+.+.++...                  .+.+..   
T Consensus       645 ~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~  722 (1010)
T KOG1991|consen  645 PVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPD  722 (1010)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccch
Confidence            4444444444444445555555444433322211111  11222222221110                  111111   


Q ss_pred             --HHHHHHHHhhcCC----HHHH-------HHH-HHcC-----ChHHHHHHh----cc--CChhhHHHHHHHHHHhhcCC
Q 043950          297 --VACWTISNITAGN----REQI-------QAV-IDAG-----LIVPLVNVL----QD--AEFDIKKEAALAIANATVRG  351 (458)
Q Consensus       297 --~a~~~l~nl~~~~----~~~~-------~~l-~~~~-----~~~~L~~ll----~~--~~~~~~~~a~~~L~~l~~~~  351 (458)
                        ..++.+...+..+    ...+       ..+ .+.+     .+|.++++.    ..  ++...+..++....|.....
T Consensus       723 y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyyn  802 (1010)
T KOG1991|consen  723 YLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYN  802 (1010)
T ss_pred             HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence              1122222111100    0000       111 1222     255555543    22  46677888888888887777


Q ss_pred             CHHHHHHHHHCCChHHHHhhccC-----CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh
Q 043950          352 THEQIKYLVREGCIKPLCDLLLC-----VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL  426 (458)
Q Consensus       352 ~~~~~~~l~~~~~l~~L~~ll~~-----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  426 (458)
                      .......+-+.|....+..+.-+     ....=++.|+-+|..++..++..+.           ...... +..+.+..|
T Consensus       803 P~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~-----------~~e~l~-~l~~~lv~L  870 (1010)
T KOG1991|consen  803 PKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQL-----------PSEVLG-QLGPALVEL  870 (1010)
T ss_pred             cHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCc-----------hHHHHH-HHHHHHHHH
Confidence            77777887788877665554332     1111234466667777766533221           222211 446677777


Q ss_pred             hcCCChHHHHHHHH
Q 043950          427 KSHDNNGIREKAVK  440 (458)
Q Consensus       427 ~~~~~~~v~~~a~~  440 (458)
                      ..+--..++.+|..
T Consensus       871 ~~~Lp~ala~ra~~  884 (1010)
T KOG1991|consen  871 LLSLPEALAERAQV  884 (1010)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66654555555444

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.06  E-value=1.6e-05  Score=56.80  Aligned_cols=87  Identities=30%  Similarity=0.452  Sum_probs=69.7

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhH
Q 043950           68 VPRFVEFL-MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNL  146 (458)
Q Consensus        68 i~~L~~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  146 (458)
                      ++.|++.+ ++++ +.+|..++++|+.+..  +         ..++.|..+++++++.+|..++++|+.+.         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 6666 8999999999995432  2         33899999999999999999999999883         


Q ss_pred             HhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950          147 VLREEALIPLLAQLNEHAKLSMLRIATWTLS  177 (458)
Q Consensus       147 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~  177 (458)
                        ....++.+.+.+.++.+..++..+.++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              22378899999977677777888888774

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.02  E-value=0.0014  Score=61.06  Aligned_cols=285  Identities=14%  Similarity=0.095  Sum_probs=160.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHH
Q 043950           68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV  147 (458)
Q Consensus        68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  147 (458)
                      .|.|-.-+++.- +.+..++++.++.++..+  .....++ ..+..|-.+|.++....|-.|+++|..++...|..... 
T Consensus       266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v-  340 (898)
T COG5240         266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV-  340 (898)
T ss_pred             HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee-
Confidence            344444455554 688999999999888743  1222222 34788888999999999999999999999887753211 


Q ss_pred             hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC---CChHHHHHHHHHHHHhccCC
Q 043950          148 LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL---DDEEVLSDACWTLSYLSYGT  224 (458)
Q Consensus       148 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~---~~~~~~~~~~~~l~~l~~~~  224 (458)
                      .+ .-+..|+    .+.+..   -+.+++..|........   +..++..+..++.+   +-.-+...+++.|+..-   
T Consensus       341 cN-~evEsLI----sd~Nr~---IstyAITtLLKTGt~e~---idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F---  406 (898)
T COG5240         341 CN-KEVESLI----SDENRT---ISTYAITTLLKTGTEET---IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF---  406 (898)
T ss_pred             cC-hhHHHHh----hccccc---chHHHHHHHHHcCchhh---HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---
Confidence            11 1133332    333333   34455555554433222   33344444444443   33344445555554433   


Q ss_pred             hhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHH
Q 043950          225 NDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTIS  303 (458)
Q Consensus       225 ~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~  303 (458)
                      +.....     .+..|...|.. +..+.+..+..+++......|+....     .++.|...+.+.   +..+.+..+|+
T Consensus       407 p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDc---ey~~I~vrIL~  473 (898)
T COG5240         407 PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDC---EYHQITVRILG  473 (898)
T ss_pred             cHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhc---chhHHHHHHHH
Confidence            322221     23444444433 45667778888888887766655443     456677777654   23334444444


Q ss_pred             HhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHH
Q 043950          304 NITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVC  383 (458)
Q Consensus       304 nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~  383 (458)
                      -+....|..-.   -...+..+..-+--++.-+|..|..||..+....+...    ....+...|-+++.++|++|+..|
T Consensus       474 iLG~EgP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~DdeVRdrA  546 (898)
T COG5240         474 ILGREGPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQDDEVRDRA  546 (898)
T ss_pred             HhcccCCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcccHHHHHHH
Confidence            44431111000   00123334443444577888888899988876543222    223345667788888888999888


Q ss_pred             HHHHHHHH
Q 043950          384 LEGLENIL  391 (458)
Q Consensus       384 ~~~l~~l~  391 (458)
                      ..++.++=
T Consensus       547 sf~l~~~~  554 (898)
T COG5240         547 SFLLRNMR  554 (898)
T ss_pred             HHHHHhhh
Confidence            87777653

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0015  Score=58.70  Aligned_cols=226  Identities=14%  Similarity=0.119  Sum_probs=164.5

Q ss_pred             hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC----CCcc----HHHHHHcCCHHHHHHhhcCCC-----CHHHHH
Q 043950           19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIE----RSPR----IEDVIQAGVVPRFVEFLMRED-----YPQLQY   85 (458)
Q Consensus        19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~----~~~~----~~~~~~~~~i~~L~~ll~~~~-----~~~i~~   85 (458)
                      --..++++.++++|.+++.++....+..+..+...+    +.+.    ...+++.++++.|++-+..-+     .-.-..
T Consensus       121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~  200 (536)
T KOG2734|consen  121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH  200 (536)
T ss_pred             HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence            345678999999999999999999999999885432    1222    566778899999998876433     012346


Q ss_pred             HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc--
Q 043950           86 EAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN--  161 (458)
Q Consensus        86 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~--  161 (458)
                      .++..+-|+..-.+.....+++.|.+.-|+.-+..  +...-...|..+++-+..++...+..+-..+++..+++.+.  
T Consensus       201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y  280 (536)
T KOG2734|consen  201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY  280 (536)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence            67788899998888999999999888887774433  44556678888998888888777777777888998888874  


Q ss_pred             --cc----ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh--hhHHHHHH
Q 043950          162 --EH----AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN--DKIQVVIE  233 (458)
Q Consensus       162 --~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~  233 (458)
                        ++    ...++.++...+|+.+.....+........+++.+.-+++. ....+..++.+|-....+++  .....+++
T Consensus       281 k~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe  359 (536)
T KOG2734|consen  281 KRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVE  359 (536)
T ss_pred             hccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence              12    23568888888888888776555555556777766666665 55667778888888876655  44555777


Q ss_pred             hCcHHHHHHHhC
Q 043950          234 AGVCRRLVELLG  245 (458)
Q Consensus       234 ~~~i~~L~~ll~  245 (458)
                      ..++..++.+.-
T Consensus       360 ~lGLrtiF~~FM  371 (536)
T KOG2734|consen  360 ILGLRTIFPLFM  371 (536)
T ss_pred             HHhHHHHHHHHh
Confidence            777676665543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.021  Score=57.54  Aligned_cols=195  Identities=15%  Similarity=0.133  Sum_probs=115.4

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +.+..|.+.+++.|..++--|+..+.++.+...    ..+.+ .++...+.++...+.+..=.-|+.+|+.++...--..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp----~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP----PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc----HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            457778888889999999999999999988753    22222 2455555555444434555688899999988422111


Q ss_pred             HHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCCCch--hhHHhhhCCHHHHHHHhcccccHHHHHHH
Q 043950          103 NVVIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNVAADSPGC--RNLVLREEALIPLLAQLNEHAKLSMLRIA  172 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~a  172 (458)
                      ..+  ..++|.+..-+.-        ....+|..|+.+.+.+++.....  .. +. ......++.....+.+...++.|
T Consensus       416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l-~~L~s~LL~~AlFDrevncRRAA  491 (1133)
T KOG1943|consen  416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VL-QSLASALLIVALFDREVNCRRAA  491 (1133)
T ss_pred             HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HH-HHHHHHHHHHHhcCchhhHhHHH
Confidence            111  1345666665532        34689999999999998654321  11 11 11122222222256677788888


Q ss_pred             HHHHHHhhcCCCCC----Chh-----------------------hhhhhHHHHH-Hh----hcCCChHHHHHHHHHHHHh
Q 043950          173 TWTLSKLCKGKPQP----PFD-----------------------QVRPALPALA-QL----IHLDDEEVLSDACWTLSYL  220 (458)
Q Consensus       173 ~~~l~~l~~~~~~~----~~~-----------------------~~~~~l~~l~-~l----l~~~~~~~~~~~~~~l~~l  220 (458)
                      ..++-......++.    ...                       ...+....++ ++    +.+=|..+++.+.++|..+
T Consensus       492 sAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L  571 (1133)
T KOG1943|consen  492 SAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKL  571 (1133)
T ss_pred             HHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence            88887665543211    000                       0011122222 22    2245789999999999998


Q ss_pred             ccCChh
Q 043950          221 SYGTND  226 (458)
Q Consensus       221 ~~~~~~  226 (458)
                      +...++
T Consensus       572 s~~~pk  577 (1133)
T KOG1943|consen  572 SLTEPK  577 (1133)
T ss_pred             HHhhHH
Confidence            855443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.01  E-value=1.5e-05  Score=50.97  Aligned_cols=55  Identities=25%  Similarity=0.517  Sum_probs=47.7

Q ss_pred             hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950          292 KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA  347 (458)
Q Consensus       292 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l  347 (458)
                      +.+|..|+|+|++++...++....... .+++.|+.++.+++..||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998877777776544 5999999999999999999999999875

...

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.98  E-value=0.0093  Score=56.34  Aligned_cols=300  Identities=16%  Similarity=0.125  Sum_probs=168.4

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcc----HHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950           36 DNSLQLEATTQFRILLSIERSPR----IEDVIQAGVVPRFVEFLMRED------YPQLQYEAAWALTNIASGTSMNTNVV  105 (458)
Q Consensus        36 ~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~~~------~~~i~~~a~~~L~~l~~~~~~~~~~~  105 (458)
                      +.......+..+..+........    .....+..+++.+.++.....      ++.+...+..++..+...-+...+.-
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45566666777777665432222    223334457888877763321      13455555555555555333333222


Q ss_pred             HhCCChHHHHHhhC----------CCC--HHHHHHHHHHHH-HhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHH
Q 043950          106 IDHGAVPIFVKLLA----------SPS--DDVREQAVWALG-NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIA  172 (458)
Q Consensus       106 ~~~~~i~~L~~ll~----------~~~--~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a  172 (458)
                      +    +..+..+..          ..+  .......+..+. -++.-++++.-. .....+..++.......++..+..+
T Consensus       136 ~----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~  210 (415)
T PF12460_consen  136 I----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAA  210 (415)
T ss_pred             H----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHH
Confidence            2    222332221          011  011112222222 222222222110 1112566777777667778888888


Q ss_pred             HHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCChHHHHH----HHHHHHHhc-cCChhhHHHHHHhCcHHHHHHHhCC
Q 043950          173 TWTLSKLCKGKPQPPFDQVRPALPALAQLI-HLDDEEVLSD----ACWTLSYLS-YGTNDKIQVVIEAGVCRRLVELLGH  246 (458)
Q Consensus       173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~----~~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~  246 (458)
                      +.+++.+...-+...  ....++..+..-+ ...+...+..    ..|+...+. ++++. .     ..++..|+.++.+
T Consensus       211 ~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~-~-----~~~~~~L~~lL~~  282 (415)
T PF12460_consen  211 LQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL-A-----TELLDKLLELLSS  282 (415)
T ss_pred             HHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch-H-----HHHHHHHHHHhCC
Confidence            999988887632222  3445555555444 3333333333    444444443 22322 1     1356778888887


Q ss_pred             CCccchhhHHHHHhHhhcCChh--------hHHHHHhc----CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHH
Q 043950          247 PSPSVLTPALWTVGNIVMGDDF--------QTQCIINH----GAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ  314 (458)
Q Consensus       247 ~~~~~~~~a~~~l~~l~~~~~~--------~~~~~~~~----~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~  314 (458)
                        +.+...+...++-+....+.        ..+.+.+.    .++|.+++..+.. +...|..-..+++++..+-|..+-
T Consensus       283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl  359 (415)
T PF12460_consen  283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVL  359 (415)
T ss_pred             --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHH
Confidence              55778888888888765322        22333333    3566777777766 556888889999999986654432


Q ss_pred             HHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCC
Q 043950          315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG  351 (458)
Q Consensus       315 ~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  351 (458)
                      .---..++|.+++.|..++.+++..++.+|..+....
T Consensus       360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            2222458999999999999999999999999998865

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.98  E-value=0.0017  Score=63.57  Aligned_cols=314  Identities=12%  Similarity=0.070  Sum_probs=188.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 043950           34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPI  113 (458)
Q Consensus        34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  113 (458)
                      ++.|.....+.+++..+++..  .....+.. .++...+..+.-...+-++..|+++++..+.  +..... ...+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST--VINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh--ccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence            455777778888888776542  11111211 2344555555544436788888888887774  221111 12366888


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-ccccHHHHHHHHHHHHHhhcCCCCCChhhhh
Q 043950          114 FVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-EHAKLSMLRIATWTLSKLCKGKPQPPFDQVR  192 (458)
Q Consensus       114 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  192 (458)
                      |.++....+.++-...+.+|+..+..+|+.... .+..+.|..+..+. .+.||.+...+-.++-.++.. ......+..
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQE  612 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHH
Confidence            888888888999999999999999888876443 34445555555543 567787777777777777653 222334557


Q ss_pred             hhHHHHHHhhcCCC----hHHHHHHHHHHHHhccCCh-hhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCC
Q 043950          193 PALPALAQLIHLDD----EEVLSDACWTLSYLSYGTN-DKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGD  266 (458)
Q Consensus       193 ~~l~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~  266 (458)
                      ..+|.++..+..++    ......++..|..+.++.+ ...+.++.. .++.+.++.-+ ++......+-.||..+....
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            88999999998766    5556666666665664433 233434433 67777777655 56677888899998888766


Q ss_pred             hhhHHHHHhcCC------hHHHHHHhccCChhhHHHHHHHHHHHhhc----CCHHHHHHHHHcCChHH-HHHHhccCChh
Q 043950          267 DFQTQCIINHGA------VPCLLALLIHNHKKSIKKVACWTISNITA----GNREQIQAVIDAGLIVP-LVNVLQDAEFD  335 (458)
Q Consensus       267 ~~~~~~~~~~~~------~~~l~~ll~~~~~~~v~~~a~~~l~nl~~----~~~~~~~~l~~~~~~~~-L~~ll~~~~~~  335 (458)
                      .++...--..++      +..+-.+|    +++.-..++..++.+..    +-+..+....+. ++.. +.++-+.+...
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLL----dp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls  766 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLL----DPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS  766 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHc----CCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence            554433322222      33344444    33344455555555543    222222222221 2222 33344456788


Q ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043950          336 IKKEAALAIANATVRGTHEQIKYLVR  361 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~~~~~~l~~  361 (458)
                      +....+.+++++..........++..
T Consensus       767 viQsLi~VfahL~~t~~~~~l~FL~S  792 (1005)
T KOG2274|consen  767 VIQSLIMVFAHLVHTDLDQLLNFLSS  792 (1005)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            88889999999987654444444444

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.98  E-value=2.4e-05  Score=55.94  Aligned_cols=87  Identities=29%  Similarity=0.441  Sum_probs=70.6

Q ss_pred             HHHHHHhh-cCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHH
Q 043950          195 LPALAQLI-HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCI  273 (458)
Q Consensus       195 l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  273 (458)
                      +|.+++.+ +++++.++..++++++.+-           +...++.|..+++++++.++..|+++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57788888 8899999999999999542           1135789999999999999999999999873          


Q ss_pred             HhcCChHHHHHHhccCChhhHHHHHHHHHH
Q 043950          274 INHGAVPCLLALLIHNHKKSIKKVACWTIS  303 (458)
Q Consensus       274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~  303 (458)
                       +...++.|.+++.++.+..+|..|.++|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             13478899999988756677999998875

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.0049  Score=55.62  Aligned_cols=222  Identities=16%  Similarity=0.085  Sum_probs=161.7

Q ss_pred             hhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh---------hhHHHHHHhCcHHHHHHHhCCCCccchh------hH
Q 043950          191 VRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN---------DKIQVVIEAGVCRRLVELLGHPSPSVLT------PA  255 (458)
Q Consensus       191 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~~~~~~~------~a  255 (458)
                      .-.+++.++.+|.+++.++....+..+..++..+.         ..+..+++.++++.|+..+..-+++++.      .+
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            36788999999999999999999999988874321         3456678889999999998875555544      45


Q ss_pred             HHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc---c
Q 043950          256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ---D  331 (458)
Q Consensus       256 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~---~  331 (458)
                      +..+-|+....+.......+.|.+..|++-+... .-..-+..|..+++-+...+.++...+-.-.++..+++-+.   .
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            7778888888888888888889998888855433 23456677777787777766566666667777887777653   2


Q ss_pred             C------ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCC
Q 043950          332 A------EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIG  405 (458)
Q Consensus       332 ~------~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~  405 (458)
                      .      ..+...+...+||.+..  .+.....+....+++...-+++. ....+..++++|...+...+.         
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~g---------  350 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEG---------  350 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCc---------
Confidence            2      34567788888888876  44666777777777766555555 445567788888877765443         


Q ss_pred             chhHHHHHHHhcchHHHHHhh
Q 043950          406 DVNQYARLVEEDEGFKKIEGL  426 (458)
Q Consensus       406 ~~~~~~~~~~~~~~~~~l~~l  426 (458)
                        .+++..|.+.+|++.+-.+
T Consensus       351 --t~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  351 --TPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             --hHHHHHHHHHHhHHHHHHH
Confidence              2357888888888888866

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.0079  Score=61.05  Aligned_cols=237  Identities=13%  Similarity=0.032  Sum_probs=144.0

Q ss_pred             HHHHHhcccccHHHHHHHHHHHHHhhcCCCCC--ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950          155 PLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP--PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI  232 (458)
Q Consensus       155 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  232 (458)
                      .+.....++.+..++..+...|..++..++..  .......+...+..-+++.+...+...+.++..+.+..+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            44455546668889999999999999873211  1122244555566666777788888888888888865552223233


Q ss_pred             HhCcHHHHHHHhCCCCccchhhHHHHHhHhhc-------CChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950          233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVM-------GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI  305 (458)
Q Consensus       233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~-------~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl  305 (458)
                      .. .++-++-.++..+...++.|..+|-.++.       +++. ....+ +.+++.+...+..+ ...+......++..+
T Consensus       737 ~k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~l-nefl~~Isagl~gd-~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  737 PK-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAIL-NEFLSIISAGLVGD-STRVVASDIVAITHI  812 (1176)
T ss_pred             HH-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHH-HHHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence            33 34444444477788888888888887773       0111 01111 12333333333333 333333224444444


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHH
Q 043950          306 TAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE  385 (458)
Q Consensus       306 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~  385 (458)
                      ..........-.-.+++..+...|.+..++++..|+.++.-++...+....... ...+++.+..+.+....+++.++-.
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            431111111111224566777778899999999999999999987665544332 2236778888888778889888888


Q ss_pred             HHHHHHHhchh
Q 043950          386 GLENILKVGEA  396 (458)
Q Consensus       386 ~l~~l~~~~~~  396 (458)
                      ++..+++...-
T Consensus       892 LlekLirkfg~  902 (1176)
T KOG1248|consen  892 LLEKLIRKFGA  902 (1176)
T ss_pred             HHHHHHHHhCH
Confidence            88888775443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.93  E-value=9.1e-05  Score=53.18  Aligned_cols=95  Identities=19%  Similarity=0.305  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950          294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL  373 (458)
Q Consensus       294 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  373 (458)
                      .|+.+.++|+.++.+-+.......+ .++++++..+.+++.+||..|+.+|.|++.....+...++-  .+++.|..+..
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence            3667888888887654444554444 38999999999999999999999999999865544444433  37888888999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 043950          374 CVDPKIVTVCLEGLENILK  392 (458)
Q Consensus       374 ~~~~~v~~~~~~~l~~l~~  392 (458)
                      ++++.|+..| ..|.++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999987665 77777765

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00077  Score=64.45  Aligned_cols=160  Identities=19%  Similarity=0.219  Sum_probs=106.9

Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHHHHH--hccCChhhHHHHHHhCcHHHHHHH-hCCCCccchhhHHHHHhHhhcCChhh
Q 043950          193 PALPALAQLIHLDDEEVLSDACWTLSY--LSYGTNDKIQVVIEAGVCRRLVEL-LGHPSPSVLTPALWTVGNIVMGDDFQ  269 (458)
Q Consensus       193 ~~l~~l~~ll~~~~~~~~~~~~~~l~~--l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~  269 (458)
                      +.=+.+-+++.+.|+-++...+.++.-  ....+         .+.+..|+.. +++.+.+||+.|.-+|+-++..+++.
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence            444566678888888888877665532  22222         2455666666 56678999999999999998877644


Q ss_pred             HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                               .+..+.+|..+.++.||..++.+|+-.|.++...       ..+..|-.+..+...-||+.|+.+++-+..
T Consensus       590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence                     6677888887779999999999999998754211       134444455556666789999998888876


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhccCCCHHH
Q 043950          350 RGTHEQIKYLVREGCIKPLCDLLLCVDPKI  379 (458)
Q Consensus       350 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  379 (458)
                      ..++..+..+  .++.+.+...+.+++++.
T Consensus       654 Q~t~~~~pkv--~~frk~l~kvI~dKhEd~  681 (929)
T KOG2062|consen  654 QQTEQLCPKV--NGFRKQLEKVINDKHEDG  681 (929)
T ss_pred             hcccccCchH--HHHHHHHHHHhhhhhhHH
Confidence            5443332221  234455556665555543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.86  E-value=0.001  Score=60.43  Aligned_cols=225  Identities=17%  Similarity=0.151  Sum_probs=124.2

Q ss_pred             ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHH
Q 043950          206 DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLAL  285 (458)
Q Consensus       206 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l  285 (458)
                      .+......|.++.++...+-.....-.+.-.+..+..+-.+.+.-++..|.++++.+.-+........+-.+....+...
T Consensus       362 ~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~s  441 (728)
T KOG4535|consen  362 HPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMS  441 (728)
T ss_pred             CCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHH
Confidence            34556667777777763322111000000111222222233444577788888887776555444544555667777777


Q ss_pred             hccCChhhHHHHHHHHHHHhhc----C--CHH-HHHHHHHcCChHHHHHHhc---cCChhhHHHHHHHHHHhhcCCCH--
Q 043950          286 LIHNHKKSIKKVACWTISNITA----G--NRE-QIQAVIDAGLIVPLVNVLQ---DAEFDIKKEAALAIANATVRGTH--  353 (458)
Q Consensus       286 l~~~~~~~v~~~a~~~l~nl~~----~--~~~-~~~~l~~~~~~~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~--  353 (458)
                      +.+. ...+|..++|+++|+..    +  +++ ...++.- -.+..+++...   ....+|+.++..+|+|+...-.+  
T Consensus       442 l~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~  519 (728)
T KOG4535|consen  442 LEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIE  519 (728)
T ss_pred             hhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhh
Confidence            7777 78899999999999974    1  211 1112111 12333333332   23678999999999999753110  


Q ss_pred             HHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh-hcCCC
Q 043950          354 EQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL-KSHDN  431 (458)
Q Consensus       354 ~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~  431 (458)
                      +........+.+..+....- ...-.|+=+++-+++|+++...-.-       +.+.+..     ..+..|..| ..+.|
T Consensus       520 ~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l-------q~~~wA~-----~~F~~L~~Lv~~~~N  587 (728)
T KOG4535|consen  520 KPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL-------QTAPWAS-----QAFNALTSLVTSCKN  587 (728)
T ss_pred             hccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc-------cCCCchH-----HHHHHHHHHHHHhcc
Confidence            00111122233333333322 2345788899999999998644310       1122222     236777776 56688


Q ss_pred             hHHHHHHHHHHHH
Q 043950          432 NGIREKAVKILET  444 (458)
Q Consensus       432 ~~v~~~a~~~l~~  444 (458)
                      -+|+-+|...+..
T Consensus       588 FKVRi~AA~aL~v  600 (728)
T KOG4535|consen  588 FKVRIRAAAALSV  600 (728)
T ss_pred             ceEeehhhhhhcC
Confidence            8888777776643

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.016  Score=58.31  Aligned_cols=260  Identities=13%  Similarity=0.107  Sum_probs=157.5

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCR  144 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~  144 (458)
                      +++..|+..+++.+ ..++=.|++.++.++...|...   + ..++...+.++.. .++..=..++.+|+.++...-..-
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~L---a-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPEL---A-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHHH---H-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            67888888888888 6999999999999999766222   1 1345666665544 334555678889999985542222


Q ss_pred             hHHhhhCCHHHHHHHhcc-------cccHHHHHHHHHHHHHhhcCCC-CCChhhhhhhHHH-HHHhhcCCChHHHHHHHH
Q 043950          145 NLVLREEALIPLLAQLNE-------HAKLSMLRIATWTLSKLCKGKP-QPPFDQVRPALPA-LAQLIHLDDEEVLSDACW  215 (458)
Q Consensus       145 ~~~~~~~~l~~l~~~l~~-------~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~-l~~ll~~~~~~~~~~~~~  215 (458)
                      ..+.  .+++.+++.+..       +....++..|+++++.+++... .........+.+. +...+-+++-.++..|..
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            2222  255666655532       2345789999999999988752 2222223333333 223444667778888887


Q ss_pred             HHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHH-hccCChhhH
Q 043950          216 TLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLAL-LIHNHKKSI  294 (458)
Q Consensus       216 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~~v  294 (458)
                      ++....-.... .    ..| + .++.....-....+.++...++.-....+..+..++     ..++.. +.+= |..+
T Consensus       494 AlqE~VGR~~n-~----p~G-i-~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-----~~L~t~Kv~HW-d~~i  560 (1133)
T KOG1943|consen  494 ALQENVGRQGN-F----PHG-I-SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-----NHLLTKKVCHW-DVKI  560 (1133)
T ss_pred             HHHHHhccCCC-C----CCc-h-hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH-----HHHHhcccccc-cHHH
Confidence            77665522111 0    011 1 112222222233455566666555555555544433     223322 4444 8899


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          295 KKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       295 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                      |+.++|+|.+++...++    ....+.++++++...+.+...+.-+..+.+.++.
T Consensus       561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            99999999998764443    3345688899998888888887776666666654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.82  E-value=0.013  Score=55.68  Aligned_cols=230  Identities=14%  Similarity=0.097  Sum_probs=150.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 043950           34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-----DYPQLQYEAAWALTNIASGTSMNTNVVIDH  108 (458)
Q Consensus        34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  108 (458)
                      ..++.+..+|+++|+|++... ...+..+.+.|..+.+++.++..     + .++..-..++|.-++...+..+..+++.
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            567999999999999998875 66677888999999999999876     4 6889999999999988888888777765


Q ss_pred             -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc-------
Q 043950          109 -GAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH-------  163 (458)
Q Consensus       109 -~~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-------  163 (458)
                       +++..+...+..                 .+......++.++-|+....+.... -.....++.++..+...       
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~  199 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS  199 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence             677777776531                 1334556677888888766544322 01233445554444321       


Q ss_pred             -ccHHHHHHHHHHHHHhhcCCC---------C---CChhhhhhhHHHHHHhhc----CC----ChHHHHHHHHHHHHhcc
Q 043950          164 -AKLSMLRIATWTLSKLCKGKP---------Q---PPFDQVRPALPALAQLIH----LD----DEEVLSDACWTLSYLSY  222 (458)
Q Consensus       164 -~~~~~~~~a~~~l~~l~~~~~---------~---~~~~~~~~~l~~l~~ll~----~~----~~~~~~~~~~~l~~l~~  222 (458)
                       +......+++.+|.++--...         .   .........+..++.+|.    ..    -.+.....+.+|.+++.
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~  279 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR  279 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence             233567777777777621110         0   000111334445555543    11    23677888888888887


Q ss_pred             CChhhHHHHHH----------------hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCC
Q 043950          223 GTNDKIQVVIE----------------AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGD  266 (458)
Q Consensus       223 ~~~~~~~~~~~----------------~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  266 (458)
                      ......+.+..                ..+-..|++++.++.+.++..+...+..+|..+
T Consensus       280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            65433332221                135667888888877888888888888887543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.77  E-value=2.3e-05  Score=50.14  Aligned_cols=55  Identities=27%  Similarity=0.550  Sum_probs=46.3

Q ss_pred             ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950          249 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI  305 (458)
Q Consensus       249 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl  305 (458)
                      +.+|..|+++|++++...+....... ..+++.|..+|.++ ++.||..|+|+|+++
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            35789999999999887777666543 57899999999988 779999999999975

...

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.75  E-value=0.0013  Score=51.37  Aligned_cols=130  Identities=14%  Similarity=0.109  Sum_probs=104.9

Q ss_pred             HHHHHHhCcHHHHHHHhCCCCc------cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHH
Q 043950          228 IQVVIEAGVCRRLVELLGHPSP------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACW  300 (458)
Q Consensus       228 ~~~~~~~~~i~~L~~ll~~~~~------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~  300 (458)
                      ...++..+++..|++++.++..      +....++.++..|..++ ......++..++..++...+... +..+...|..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            4557888999999999988653      55666788888887643 34455666778889999888764 6789999999


Q ss_pred             HHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHH
Q 043950          301 TISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKY  358 (458)
Q Consensus       301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  358 (458)
                      .|-+++..++...+.+.+.--++.|+..|+..+.+++.+++..+..+....+...++.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~  140 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKE  140 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            9999998887777777777789999999999999999999999999988877665554

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0077  Score=58.10  Aligned_cols=339  Identities=12%  Similarity=0.096  Sum_probs=170.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      -..+-+-|+++++-+|-..++.|+++ ..  ++    ++ ...+|.+...|.+.+ .-+|..|..++..+-....    .
T Consensus       101 cna~RkDLQHPNEyiRG~TLRFLckL-kE--~E----Ll-epl~p~IracleHrh-sYVRrNAilaifsIyk~~~----~  167 (948)
T KOG1058|consen  101 CNAYRKDLQHPNEYIRGSTLRFLCKL-KE--PE----LL-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE----H  167 (948)
T ss_pred             HHHHhhhccCchHhhcchhhhhhhhc-Cc--HH----Hh-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh----h
Confidence            34555678888888888888888887 21  12    22 246888888888888 7888888888887766211    1


Q ss_pred             HHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCC-----chhhHHhhhCC-H-HHHHHHhc--ccccHHHHHHHHH
Q 043950          105 VIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSP-----GCRNLVLREEA-L-IPLLAQLN--EHAKLSMLRIATW  174 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~~~~~-l-~~l~~~l~--~~~~~~~~~~a~~  174 (458)
                      ++. .+-..+-++|. ..++..+++|...|...-....     .+.+.+-..|. + ..+++++.  -..+|..+..-..
T Consensus       168 L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~  246 (948)
T KOG1058|consen  168 LIP-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIR  246 (948)
T ss_pred             hcC-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHH
Confidence            111 11222333332 3455555555544433211000     00000000000 0 00111111  0122333333333


Q ss_pred             HHHHhhcCC-CCCChhhhhhhHHHHHHhh-cCCChHHHHHHHHHHHHhcc-CChhhHHHHH--------------HhCcH
Q 043950          175 TLSKLCKGK-PQPPFDQVRPALPALAQLI-HLDDEEVLSDACWTLSYLSY-GTNDKIQVVI--------------EAGVC  237 (458)
Q Consensus       175 ~l~~l~~~~-~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~--------------~~~~i  237 (458)
                      ++.++.... +....+.. +      .+. -++++.....+..++..+.. .++.+...++              =.|.+
T Consensus       247 ~i~~lL~stssaV~fEaa-~------tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~  319 (948)
T KOG1058|consen  247 CIYNLLSSTSSAVIFEAA-G------TLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLI  319 (948)
T ss_pred             HHHHHHhcCCchhhhhhc-c------eEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHH
Confidence            444333221 11100000 0      000 02334444444444433331 1111111110              12455


Q ss_pred             HHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH
Q 043950          238 RRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV  316 (458)
Q Consensus       238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  316 (458)
                      -.+++.|.+++-+++..++.....|+.... +..-.+++..+.+.--.  .+....+.|..-..++..++...++...  
T Consensus       320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e~d~~~~yRqlLiktih~cav~Fp~~aa--  395 (948)
T KOG1058|consen  320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--ESDDNGKYRQLLIKTIHACAVKFPEVAA--  395 (948)
T ss_pred             HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--ccccchHHHHHHHHHHHHHhhcChHHHH--
Confidence            566778888888999999888877765332 11111111111110000  1121346678888888888876655433  


Q ss_pred             HHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhch
Q 043950          317 IDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       317 ~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                         .+++.|++.+.+.++..-...+..+.......+.-      +...+..|+.-+. -...++...++|.++.++....
T Consensus       396 ---tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L------r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  396 ---TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL------RASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             ---HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH------HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence               47889999999888877666666666665543211      1223555555554 2566788899999999988666


Q ss_pred             hh
Q 043950          396 AE  397 (458)
Q Consensus       396 ~~  397 (458)
                      +.
T Consensus       467 ~i  468 (948)
T KOG1058|consen  467 EI  468 (948)
T ss_pred             HH
Confidence            43

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.0066  Score=51.09  Aligned_cols=251  Identities=19%  Similarity=0.255  Sum_probs=147.4

Q ss_pred             HHHHhhc--CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           27 AMVAGVW--SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        27 ~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      .+-+.|.  +....-++.|+..|+++....   .         +..+.+...+.. ...+...+.+|+.....       
T Consensus         7 ~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~~-------   66 (289)
T KOG0567|consen    7 TIGNILVNKSQPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQDE-------   66 (289)
T ss_pred             HHHHHHcCccHHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhccc-------
Confidence            3334443  344566677887777774431   1         444444444443 45566677777766653       


Q ss_pred             HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          105 VIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                          ..++.|+..+..  ..+-+|..|..+|+.+. + +.         .++.+-+.. +++-.++.+.+-.++..+-..
T Consensus        67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~  130 (289)
T KOG0567|consen   67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWK  130 (289)
T ss_pred             ----hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHh
Confidence                447777777664  44677777888888774 1 11         222233333 444455555555555544322


Q ss_pred             C---------------CCCChhhhhhhHHHHHHhhcCCC-hH-HHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC
Q 043950          183 K---------------PQPPFDQVRPALPALAQLIHLDD-EE-VLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG  245 (458)
Q Consensus       183 ~---------------~~~~~~~~~~~l~~l~~ll~~~~-~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~  245 (458)
                      .               |...  ...+-+..+...+.... +. -+..++..|.|+-  .++         .+..+++-+.
T Consensus       131 ~~~~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~  197 (289)
T KOG0567|consen  131 DIIDKIANSSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLA  197 (289)
T ss_pred             hccccccccCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcc
Confidence            1               1111  11222444444443332 22 2456667776653  222         2445566677


Q ss_pred             CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc-CChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHH
Q 043950          246 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-NHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVP  324 (458)
Q Consensus       246 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~  324 (458)
                      .++.-.|..+.+++|.+-+.           -.++.+.+.|.. ...+.||.+|+.+|+.++.  ++         .++.
T Consensus       198 ~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~v  255 (289)
T KOG0567|consen  198 DDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEV  255 (289)
T ss_pred             cchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHH
Confidence            77777889999999888531           246666666643 2367999999999999974  23         5667


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhh
Q 043950          325 LVNVLQDAEFDIKKEAALAIANAT  348 (458)
Q Consensus       325 L~~ll~~~~~~~~~~a~~~L~~l~  348 (458)
                      |.+.+.++++-+++.+..+|--+-
T Consensus       256 L~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  256 LKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHH
Confidence            888888888888888888776553

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.68  E-value=0.00077  Score=61.26  Aligned_cols=302  Identities=16%  Similarity=0.168  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-----ChhhHHHHHhCCCh
Q 043950           37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG-----TSMNTNVVIDHGAV  111 (458)
Q Consensus        37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i  111 (458)
                      ..++++++..|.-++..-   .....+...+...+..-+.+.. +.++..++.++..+..+     .|+..+.-...|.+
T Consensus       269 s~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~f  344 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPF  344 (728)
T ss_pred             chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccH
Confidence            557788888877776542   1222222334444455556666 89999999999887652     22222221222211


Q ss_pred             HHHH------Hhh-CCCCHHHHHHHHHHHHHhhcCC----CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          112 PIFV------KLL-ASPSDDVREQAVWALGNVAADS----PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       112 ~~L~------~ll-~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      -.+.      ... ++..+..+...+.++.++....    |+.++.     ..+.+..-..++.+.-++..|..++..+.
T Consensus       345 w~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyV  419 (728)
T KOG4535|consen  345 WTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYV  419 (728)
T ss_pred             HHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEE
Confidence            1111      111 1233455667777787776322    111111     12222333323334445666677776666


Q ss_pred             cCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC----Chh---hHHHHHHhCcHHHHHHHhC---CCCc
Q 043950          181 KGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG----TND---KIQVVIEAGVCRRLVELLG---HPSP  249 (458)
Q Consensus       181 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~----~~~---~~~~~~~~~~i~~L~~ll~---~~~~  249 (458)
                      -++ ..........+...+...+.+..-..++.+.|+++|++..    .+.   ....+.. -.+..+...-.   ..+.
T Consensus       420 LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~d  498 (728)
T KOG4535|consen  420 LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKD  498 (728)
T ss_pred             eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhh
Confidence            654 2223334466666666777777778899999999999832    111   1221111 12222322222   2467


Q ss_pred             cchhhHHHHHhHhhcCChhh----HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHH-HHHHcCChHH
Q 043950          250 SVLTPALWTVGNIVMGDDFQ----TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ-AVIDAGLIVP  324 (458)
Q Consensus       250 ~~~~~a~~~l~~l~~~~~~~----~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~-~l~~~~~~~~  324 (458)
                      .++..+.++|+|+...-+..    ...+++ +-+..+....-.+...+||.++|++++|+.++..-..+ .=+...+++.
T Consensus       499 kV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~  577 (728)
T KOG4535|consen  499 KVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA  577 (728)
T ss_pred             hhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence            89999999999987432211    111111 11222222222222678999999999999974311011 0112336777


Q ss_pred             HHHHhcc-CChhhHHHHHHHHHHhhc
Q 043950          325 LVNVLQD-AEFDIKKEAALAIANATV  349 (458)
Q Consensus       325 L~~ll~~-~~~~~~~~a~~~L~~l~~  349 (458)
                      |..++.+ .+.++|.+|+.+|.--..
T Consensus       578 L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  578 LTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             HHHHHHHhccceEeehhhhhhcCCCC
Confidence            7777754 589999999999876654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.65  E-value=0.057  Score=53.50  Aligned_cols=167  Identities=17%  Similarity=0.195  Sum_probs=121.2

Q ss_pred             hCCCCHHHHHHHH-HHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHH
Q 043950          118 LASPSDDVREQAV-WALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALP  196 (458)
Q Consensus       118 l~~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  196 (458)
                      +.+.+...+..|+ .+++.+..+.+ ...      .++.+++... ..|.++++-.-.-+..+....|    ...--++.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-mss------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavN   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-MSS------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVN   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-hHH------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHH
Confidence            6665655555554 45666665543 211      4566777774 7788888877666666666554    33455666


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhc
Q 043950          197 ALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH  276 (458)
Q Consensus       197 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  276 (458)
                      .+.+=++++++.+|..|+++++.+=      ...+.. .+++.+.+++.++++.||+.|+.++..+-+.++..   .-+.
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~------~~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~  165 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLR------VKELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHEL  165 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcC------hHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcc
Confidence            7777888999999999999998773      222332 36789999999999999999999999997655533   3356


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          277 GAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      |.+..+..++.+. ++.|...|..++..+..
T Consensus       166 g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         166 GLIDILKELVADS-DPIVIANALASLAEIDP  195 (757)
T ss_pred             cHHHHHHHHhhCC-CchHHHHHHHHHHHhch
Confidence            7888888888888 99999999999998864

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.59  E-value=0.00038  Score=49.93  Aligned_cols=67  Identities=15%  Similarity=0.337  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCchhhHHhh
Q 043950           83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAADSPGCRNLVLR  149 (458)
Q Consensus        83 i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  149 (458)
                      .+...+++|+|++..++...+.+.+.|+++.+++...  ..+|-+++.|++++.|++.++++.++.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            3567889999999999999999999999999999654  478999999999999999999887776554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.59  E-value=0.00071  Score=48.61  Aligned_cols=94  Identities=13%  Similarity=0.174  Sum_probs=68.5

Q ss_pred             chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc
Q 043950          251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ  330 (458)
Q Consensus       251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~  330 (458)
                      .|..++.+|...+..-+......+ ..++++++..+.++ +++||..|+.++.|++......+...+ ..+++.|.+++.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence            356677778777665555544444 35899999999999 999999999999999974333332222 248888999999


Q ss_pred             cCChhhHHHHHHHHHHhh
Q 043950          331 DAEFDIKKEAALAIANAT  348 (458)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~  348 (458)
                      +.++.||..| ..|-++.
T Consensus        79 D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CCchhHHHHH-HHHHHHh
Confidence            9999988655 6666654

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.57  E-value=0.00024  Score=42.10  Aligned_cols=39  Identities=36%  Similarity=0.705  Sum_probs=35.6

Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043950           99 SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA  137 (458)
Q Consensus        99 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  137 (458)
                      ++.+..+.+.|+++.|++++.+++++++..++|+|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347778889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.53  E-value=0.035  Score=54.96  Aligned_cols=238  Identities=16%  Similarity=0.112  Sum_probs=153.0

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhC
Q 043950           73 EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREE  151 (458)
Q Consensus        73 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  151 (458)
                      ..+.....|.+...+.+++...+.......... . ..+...+..+. +..+-++..|+++++..+.... +..  ...+
T Consensus       456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~~p~  530 (1005)
T KOG2274|consen  456 NGLVYQESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--LQPM  530 (1005)
T ss_pred             hhcccccCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--cchH
Confidence            334444447777788888887766322222111 1 12334444333 3556677778888887773221 111  1224


Q ss_pred             CHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc--CCChHHHHHHHHHHHHhccCChhhHH
Q 043950          152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH--LDDEEVLSDACWTLSYLSYGTNDKIQ  229 (458)
Q Consensus       152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~  229 (458)
                      ++..++.+. ...+.++......+|+..+..+|.........+.|..+.++.  ++||.+...+-.++-.++.... +..
T Consensus       531 ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g  608 (1005)
T KOG2274|consen  531 ILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG  608 (1005)
T ss_pred             HHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc
Confidence            455555555 556677888899999999998877666667778887776554  6788777777777776664222 222


Q ss_pred             HHHHhCcHHHHHHHhCCCC----ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950          230 VVIEAGVCRRLVELLGHPS----PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI  305 (458)
Q Consensus       230 ~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl  305 (458)
                      .+ ....+|.++..|..+.    .....-++.+|..+.+..+.-....+-.-.+|.+.++.-++.|......+..+|..+
T Consensus       609 ~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~  687 (1005)
T KOG2274|consen  609 PM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRAL  687 (1005)
T ss_pred             ch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence            12 2347899999998865    455666777888777766544444444567888888877765888999999999999


Q ss_pred             hcCCHHHHHHHHH
Q 043950          306 TAGNREQIQAVID  318 (458)
Q Consensus       306 ~~~~~~~~~~l~~  318 (458)
                      ...+.++......
T Consensus       688 Is~~~eq~~t~~~  700 (1005)
T KOG2274|consen  688 ISVTLEQLLTWHD  700 (1005)
T ss_pred             HhcCHHHHHhhcc
Confidence            8876666555443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.49  E-value=0.0065  Score=54.71  Aligned_cols=209  Identities=12%  Similarity=0.070  Sum_probs=146.5

Q ss_pred             HHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh-----HHHHHh--cCChHHHHHHhccCChhhHHHHHHHH
Q 043950          229 QVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ-----TQCIIN--HGAVPCLLALLIHNHKKSIKKVACWT  301 (458)
Q Consensus       229 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~--~~~~~~l~~ll~~~~~~~v~~~a~~~  301 (458)
                      +.+...+.+..|+..|..-+-+.+..+..+.+++.+.....     ...+..  ..++..|+....   ++++-..+...
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence            44667789999999999888889999999999998754322     334432  234444444443   44566666667


Q ss_pred             HHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH--CCChHHHHhhccCCCHHH
Q 043950          302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR--EGCIKPLCDLLLCVDPKI  379 (458)
Q Consensus       302 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~~~l~~L~~ll~~~~~~v  379 (458)
                      |..++.+ +.....++....+..+.+....++.++...|...+..+......-..+++..  ..++..+..++.+++.-+
T Consensus       147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt  225 (335)
T PF08569_consen  147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT  225 (335)
T ss_dssp             HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred             HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence            7777654 4667778888899999999999999999999999999877543333333332  135667778888999889


Q ss_pred             HHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950          380 VTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVV  451 (458)
Q Consensus       380 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  451 (458)
                      +..++++|+.++-.-....          -....+.+..-++.+..|+.+++..++-.|-.+..-|......
T Consensus       226 krqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             HHHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             ehhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence            9999999999997655432          1245555666788999999999999999998888776655443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.006  Score=59.06  Aligned_cols=141  Identities=11%  Similarity=0.086  Sum_probs=85.0

Q ss_pred             hhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhH
Q 043950          192 RPALPALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT  270 (458)
Q Consensus       192 ~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~  270 (458)
                      ...+..+..+|+. +.-+.+.....++..+....++...     .++..|...+.+..  ...-+.+.+.-+....+...
T Consensus       390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~  462 (865)
T KOG1078|consen  390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAP  462 (865)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCC
Confidence            3445555555554 2345566666666666654443332     23455566555433  44556666666654433221


Q ss_pred             HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhh
Q 043950          271 QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANAT  348 (458)
Q Consensus       271 ~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~  348 (458)
                         .....+..+....--. +..+|..|..++..+..+++...     ..+...+.+.+.+.|.++|..|..++.++-
T Consensus       463 ---~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  463 ---NPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             ---CcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence               1123344444444444 77899999999999985442221     235567788888999999999999999886

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.47  E-value=0.0062  Score=50.59  Aligned_cols=143  Identities=13%  Similarity=0.153  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC----CCHHHHHHHHHHHHHHcCCC-hhhHHHHHhCCChHH
Q 043950           39 LQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE----DYPQLQYEAAWALTNIASGT-SMNTNVVIDHGAVPI  113 (458)
Q Consensus        39 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~  113 (458)
                      -...|+..|..++++  ++....+.++.+=-.|-.+|...    ..+-+|..++.+++.+...+ .+....+...+++|.
T Consensus        95 RVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl  172 (293)
T KOG3036|consen   95 RVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL  172 (293)
T ss_pred             hHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence            334566666777776  67888888887766666666432    23578999999999998743 445566678899999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhh-------hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          114 FVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR-------EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       114 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                      .++.+..+++..+..|..++..+..++....-....       ...+..++..+.+.+++.+.++++.+...|+.+.
T Consensus       173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            999999999999999999999998776543222111       1234555566657788899999999999998773

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.13  Score=50.34  Aligned_cols=223  Identities=18%  Similarity=0.181  Sum_probs=120.9

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh-
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM-  100 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~-  100 (458)
                      .+.+=.+.++.++.|...+...-.++..+..-. .+..      -+...+.+-....+ +..+..|++.|+.+..+..- 
T Consensus        63 te~ff~~tKlfQskd~~LRr~vYl~Ikels~is-edvi------ivtsslmkD~t~~~-d~yr~~AiR~L~~I~d~~m~~  134 (865)
T KOG1078|consen   63 TELFFAITKLFQSKDVSLRRMVYLAIKELSKIS-EDVI------IVTSSLMKDMTGKE-DLYRAAAIRALCSIIDGTMLQ  134 (865)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHhhccccc-hhhh------hhhHHHHhhccCCC-cchhHHHHHHHHhhcCcchhH
Confidence            345667777888899999988888888774432 1111      12344444433344 57778888888887764321 


Q ss_pred             hHHHHHhCCChH--------HHH---HhhCC------------------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhC
Q 043950          101 NTNVVIDHGAVP--------IFV---KLLAS------------------PSDDVREQAVWALGNVAADSPGCRNLVLREE  151 (458)
Q Consensus       101 ~~~~~~~~~~i~--------~L~---~ll~~------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  151 (458)
                      ......++.++.        +++   +++..                  .+.-++.+++..|..+-..+.     +    
T Consensus       135 ~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~dr-----l----  205 (865)
T KOG1078|consen  135 AIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR-----L----  205 (865)
T ss_pred             HHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH-----H----
Confidence            111111211111        111   11111                  122334444444444421110     0    


Q ss_pred             CHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHH
Q 043950          152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVV  231 (458)
Q Consensus       152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  231 (458)
                      ++..++..+..+....  ..|-|.+.......-...........+.+-..+.+....+...+.+++.++.......... 
T Consensus       206 a~sklv~~~~~~~~~~--~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-  282 (865)
T KOG1078|consen  206 AVSKLVQKFTRGSLKS--PLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-  282 (865)
T ss_pred             HHHHHHHHHccccccc--hhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-
Confidence            2233333332211000  1112222221111101112233566777888888999999999999999887555433222 


Q ss_pred             HHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChh
Q 043950          232 IEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDF  268 (458)
Q Consensus       232 ~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  268 (458)
                          .+..|-.+++++...+|-.|.++|..++...+.
T Consensus       283 ----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~  315 (865)
T KOG1078|consen  283 ----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ  315 (865)
T ss_pred             ----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence                567788888999999999999999999876654

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.44  E-value=0.01  Score=57.80  Aligned_cols=239  Identities=14%  Similarity=0.079  Sum_probs=153.6

Q ss_pred             hhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhc
Q 043950          143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD-EEVLSDACWTLSYLS  221 (458)
Q Consensus       143 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~  221 (458)
                      .+...++.|+...++.+. ....+.-+.....+|..   .. .-.......+++.+...+++.. ..-...++.++.|++
T Consensus       496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~---~i-~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG---KI-DFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh---hc-CCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            344566778888898888 44455666666667762   10 1111122344444444443222 222346788899998


Q ss_pred             cCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHh-cCChHHHHHHhccCChhhHHHHHHH
Q 043950          222 YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKKSIKKVACW  300 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~v~~~a~~  300 (458)
                      ..+....+.+.+...++.+-.++..+++..+..++..+.||..+..-....+.+ ...++.+...+... +.....+++.
T Consensus       571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~  649 (748)
T KOG4151|consen  571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG  649 (748)
T ss_pred             CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence            776666666777777777778888889999999999999999866666666666 45666666666665 7777777777


Q ss_pred             HHHHhhcCCHHHHHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHH
Q 043950          301 TISNITAGNREQIQA-VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI  379 (458)
Q Consensus       301 ~l~nl~~~~~~~~~~-l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  379 (458)
                      ++..++.....++.. ..-......+..++.+++.+++...+....|+ .....+....+.....+..+...-.-.-...
T Consensus       650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~-~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~  728 (748)
T KOG4151|consen  650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL-FEALFEIAEKIFETEVMELLSGLQKLNRAPK  728 (748)
T ss_pred             cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH-HHHHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence            777666543334332 22244778889999999999999999999995 4445566666666665555555444333333


Q ss_pred             HHHHHHHHH
Q 043950          380 VTVCLEGLE  388 (458)
Q Consensus       380 ~~~~~~~l~  388 (458)
                      +..+...|.
T Consensus       729 ~~~~~~~l~  737 (748)
T KOG4151|consen  729 REDAAPCLS  737 (748)
T ss_pred             hhhhhhHHH
Confidence            333333443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.0071  Score=61.38  Aligned_cols=232  Identities=15%  Similarity=0.158  Sum_probs=147.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHH
Q 043950          121 PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA  197 (458)
Q Consensus       121 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~  197 (458)
                      .+..+|..+...|..++.. +.......  .-+..+.+.+.   ++.+...+...+.++..+....+..........+|.
T Consensus       666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~--q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E  742 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSS-PSGEGLVE--QRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE  742 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcC-CchhhHHH--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5788999999999999876 22222211  12333333332   344556778888888888877664445556667777


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhC------cHHHHHHHhC----CCCccchhhHHHHHhHhhcCCh
Q 043950          198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAG------VCRRLVELLG----HPSPSVLTPALWTVGNIVMGDD  267 (458)
Q Consensus       198 l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~------~i~~L~~ll~----~~~~~~~~~a~~~l~~l~~~~~  267 (458)
                      ++-.++..+...+..+..+|..++.     ++...+.|      .+..++..+.    .....+....+.++..+.....
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~  817 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK  817 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence            6666688888999999998888872     11111222      3344444433    3333333333455555544322


Q ss_pred             hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950          268 FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA  347 (458)
Q Consensus       268 ~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l  347 (458)
                      .......-.++++.+..+|.++ .+++++.|...+..++...|+.+-.-....+++.+..++.+...+++..+-..|-.+
T Consensus       818 ~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  818 NILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL  896 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            2222222245677788888888 999999999999999976555443333334788888888888888998888888888


Q ss_pred             hcCCCHHHHHHHHH
Q 043950          348 TVRGTHEQIKYLVR  361 (458)
Q Consensus       348 ~~~~~~~~~~~l~~  361 (458)
                      +.....+..+.+.+
T Consensus       897 irkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  897 IRKFGAEELESFLP  910 (1176)
T ss_pred             HHHhCHHHHHhhCH
Confidence            77655555554444

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.41  E-value=0.0075  Score=49.46  Aligned_cols=93  Identities=17%  Similarity=0.247  Sum_probs=74.1

Q ss_pred             CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHH
Q 043950          248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVN  327 (458)
Q Consensus       248 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~  327 (458)
                      ++.+|..++.+++.++...+...+     ..++.+...|.++ ++.||+.|..+++.+.....-.    ++..++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence            356889999999999887765544     4688899999999 9999999999999998632111    11224467788


Q ss_pred             HhccCChhhHHHHHHHHHHhhcC
Q 043950          328 VLQDAEFDIKKEAALAIANATVR  350 (458)
Q Consensus       328 ll~~~~~~~~~~a~~~L~~l~~~  350 (458)
                      .+.+++++++..|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999876

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.41  E-value=0.0066  Score=54.69  Aligned_cols=202  Identities=14%  Similarity=0.109  Sum_probs=139.1

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh-----hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR-----NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK  178 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~  178 (458)
                      .+...+.+..|+..|..-+-+.|..+..++.++.+.....+     +.+.. ..-..+..++..-.++++.-.+...++.
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence            34455888999999988889999999999999986654332     22222 1122222223233456666777777777


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHh---CcHHHHHHHhCCCCccchhhH
Q 043950          179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEA---GVCRRLVELLGHPSPSVLTPA  255 (458)
Q Consensus       179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~~~~~a  255 (458)
                      .++...-.........+-.+...+..++=++...+..++..+..........+...   .++.....++.+++.-.++.+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            77664323333336667778888889999999999999999776655555445544   467788899999999999999


Q ss_pred             HHHHhHhhcCChh---hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          256 LWTVGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       256 ~~~l~~l~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      +..|+.+......   ..+.+-+..-+..++.+|+++ +..++.+|..++--++.
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence            9999999864332   123333566799999999999 99999999999998886

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.40  E-value=0.00051  Score=40.60  Aligned_cols=38  Identities=32%  Similarity=0.654  Sum_probs=34.1

Q ss_pred             hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950          268 FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT  306 (458)
Q Consensus       268 ~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~  306 (458)
                      +....+.+.|+++.|++++.++ ++++++.++|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence            3566777899999999999987 9999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.35  E-value=0.012  Score=48.27  Aligned_cols=109  Identities=18%  Similarity=0.180  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCH-HHHHHH
Q 043950           81 PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEAL-IPLLAQ  159 (458)
Q Consensus        81 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l-~~l~~~  159 (458)
                      +.+|..++.+++.++...+...+     ..++.+...|.++++.+|..|+.+|.+|...+..     .-.|.+ ..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHHH
Confidence            78999999999999986554443     3478999999999999999999999999755322     222333 677777


Q ss_pred             hcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc
Q 043950          160 LNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH  203 (458)
Q Consensus       160 l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~  203 (458)
                      + .+++++++..|..++..+....   ........++.++..+.
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~~---~~~~i~~~~~e~i~~l~  111 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKKR---NPNIIYNNFPELISSLN  111 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHh
Confidence            7 8889999999999999998763   12223444444444444

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.31  E-value=0.0023  Score=45.94  Aligned_cols=68  Identities=18%  Similarity=0.282  Sum_probs=57.8

Q ss_pred             chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043950          251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVID  318 (458)
Q Consensus       251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~  318 (458)
                      ++...+.+|+|++..++.....+.+.++++.++....-+ .+|-+|+.|.|++.|++.+++++...+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            466789999999999999999999999999998876533 37899999999999999999887665543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.30  E-value=0.0013  Score=48.51  Aligned_cols=70  Identities=17%  Similarity=0.270  Sum_probs=57.7

Q ss_pred             ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHH
Q 043950          364 CIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL  442 (458)
Q Consensus       364 ~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l  442 (458)
                      ++..|+.++. +.|+.+...|+.=|+.+++..+..             +..+.+.|+...+..|++|+|++|+..|...+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av  110 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV  110 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence            4777888884 557778888999999999987764             77788999999999999999999999999998


Q ss_pred             HHhc
Q 043950          443 ETYW  446 (458)
Q Consensus       443 ~~~~  446 (458)
                      +.+.
T Consensus       111 Qklm  114 (119)
T PF11698_consen  111 QKLM  114 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.23  E-value=0.038  Score=49.63  Aligned_cols=191  Identities=19%  Similarity=0.174  Sum_probs=121.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--Chh
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVI--QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG--TSM  100 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~--~~~  100 (458)
                      +...+..+.......|..++..+.+++...  .....+.  ...++..+.+.++.+. .+-+..|+++++-++-.  ...
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~  121 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGE  121 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCc
Confidence            556677777777999999999999998763  2223332  2346778888888887 56677787877776553  223


Q ss_pred             hHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhc---CCCchhhHHhhhCCHHHHHH--Hhccc---------c
Q 043950          101 NTNVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAA---DSPGCRNLVLREEALIPLLA--QLNEH---------A  164 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~l~~--~l~~~---------~  164 (458)
                      ....+++ ...|.|.+.+.+.  ...+|..++.+|+-++.   ..+......  ...+..+..  ....+         +
T Consensus       122 ~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~  198 (309)
T PF05004_consen  122 DSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAED  198 (309)
T ss_pred             cHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCC
Confidence            3444444 4578888888763  45677777777776653   222211111  112332211  12111         2


Q ss_pred             cHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950          165 KLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS  221 (458)
Q Consensus       165 ~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  221 (458)
                      ++.+...|+.+.+-|....+.. ........+|.+..+|.+.|.+++..|-.+|.-+-
T Consensus       199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            3567777777766666554332 22445778999999999999999999988887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.22  E-value=0.015  Score=45.47  Aligned_cols=126  Identities=10%  Similarity=0.144  Sum_probs=95.8

Q ss_pred             HHHHHhcCChHHHHHHhccCCh-----hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHH
Q 043950          270 TQCIINHGAVPCLLALLIHNHK-----KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAAL  342 (458)
Q Consensus       270 ~~~~~~~~~~~~l~~ll~~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~  342 (458)
                      ...+++.+++..++++++++..     ..+...+..++..+..+..-. ....+..++...+...+..  +..+...++.
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vs-Wd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVS-WDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCc-hhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            3567788999999999998732     255556666666666553211 2234445777788777654  6889999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhh
Q 043950          343 AIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAE  397 (458)
Q Consensus       343 ~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~  397 (458)
                      .|-+++.+ ++.....+.++--++.|+..++..+++++..++..+..++...+..
T Consensus        83 ILEs~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   83 ILESIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            99999985 5566677777778999999999999999999999999999877654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.20  E-value=0.067  Score=48.04  Aligned_cols=197  Identities=13%  Similarity=0.110  Sum_probs=124.5

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH--HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC--ChhhH
Q 043950          195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI--EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG--DDFQT  270 (458)
Q Consensus       195 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~--~~~~~  270 (458)
                      +...+..+.......|+.++..+.++..... ..+.+.  ..-++..+.+.++.+...-+..|+.+++-++-.  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            4444555566668899999998888874432 112121  123677888888887666666777777776543  22334


Q ss_pred             HHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhh---cCCHHHHHHHHHcCChHHHHH--Hhcc----------CCh
Q 043950          271 QCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNIT---AGNREQIQAVIDAGLIVPLVN--VLQD----------AEF  334 (458)
Q Consensus       271 ~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~---~~~~~~~~~l~~~~~~~~L~~--ll~~----------~~~  334 (458)
                      ..+++ .+.|.|...+..+. ...+|..++.+|+-++   ....+.....++  .+..+..  ..+.          +++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            44443 47788888887662 2356666665666554   334444442222  2221111  1211          135


Q ss_pred             hhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950          335 DIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       335 ~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      .+...|+.+++-++...+........ ...++.|..+|++++.+|+..|-.+|.-+++....
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            68999999999888766554444433 24589999999999999999999999988887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.20  E-value=0.15  Score=48.90  Aligned_cols=296  Identities=13%  Similarity=0.074  Sum_probs=149.3

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh
Q 043950           69 PRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL  148 (458)
Q Consensus        69 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  148 (458)
                      ..++...+. + +..+.-|+..+.....+.|+..+..     +..++.+..+.+..+|.+|+..|..+|.+.++....  
T Consensus        26 ~~il~~~kg-~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--   96 (556)
T PF05918_consen   26 KEILDGVKG-S-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--   96 (556)
T ss_dssp             HHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred             HHHHHHccC-C-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence            334444443 4 6889999999999999888877654     689999999999999999999999999987765333  


Q ss_pred             hhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---CCChHHHHHHHHHHHHhc-cCC
Q 043950          149 REEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH---LDDEEVLSDACWTLSYLS-YGT  224 (458)
Q Consensus       149 ~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~-~~~  224 (458)
                         +...|+++| ...++.-...+-++|..+...++       .+.+..+...+.   +.++.+++.++..|..-. .-.
T Consensus        97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence               355677777 56666556666677777665432       344444444443   678889999998775433 211


Q ss_pred             hhhHH--HHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC----ChhhHHHHHhcCChHHHHHHh------ccCChh
Q 043950          225 NDKIQ--VVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG----DDFQTQCIINHGAVPCLLALL------IHNHKK  292 (458)
Q Consensus       225 ~~~~~--~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~----~~~~~~~~~~~~~~~~l~~ll------~~~~~~  292 (458)
                      .+...  .-.+.=++..+.+.|.+-...--...+.+|..+-.+    .....+.+     ++.+.+..      ... ++
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~  239 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP  239 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence            11111  111222455566666653322223334444444331    22222322     23333222      112 33


Q ss_pred             hHHHHHHHHHHH----hhc--CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChH
Q 043950          293 SIKKVACWTISN----ITA--GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIK  366 (458)
Q Consensus       293 ~v~~~a~~~l~n----l~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~  366 (458)
                      +.-.....++..    +..  ++.....++.+ .++|.+-++    +.+.+...+.+++.++..........+++ -++.
T Consensus       240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~  313 (556)
T PF05918_consen  240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ  313 (556)
T ss_dssp             HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence            332222222222    222  34455555555 377755555    45677788888888887654322222221 1223


Q ss_pred             HHHhhccCC--CH----HHHHHHHHHHHHHHHhchh
Q 043950          367 PLCDLLLCV--DP----KIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       367 ~L~~ll~~~--~~----~v~~~~~~~l~~l~~~~~~  396 (458)
                      .|..++-..  .+    ..++..+.++..+....++
T Consensus       314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            333333221  22    3456677777777766554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.11  Score=44.03  Aligned_cols=203  Identities=21%  Similarity=0.232  Sum_probs=131.8

Q ss_pred             HHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 043950           61 DVIQAGVVPRFVEFLMRED-YPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD  139 (458)
Q Consensus        61 ~~~~~~~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  139 (458)
                      ++.....+|.|+..+.+.+ .+.+|..|..+|+++..  +         ..++.+-++.+++...+++.+..++..+-..
T Consensus        62 Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~  130 (289)
T KOG0567|consen   62 QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWK  130 (289)
T ss_pred             hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHh
Confidence            3344567999999887654 37889999999999884  2         4578888888778888888888887776522


Q ss_pred             CCchh-----h--HH-----hhhCCHHHHHHHhcccccHHH-HHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC
Q 043950          140 SPGCR-----N--LV-----LREEALIPLLAQLNEHAKLSM-LRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD  206 (458)
Q Consensus       140 ~~~~~-----~--~~-----~~~~~l~~l~~~l~~~~~~~~-~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~  206 (458)
                      +....     .  .+     ...+-+..+-..+.+.+.+.+ +..+.+.|+|+-.          ...+..+..-+..+.
T Consensus       131 ~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~S  200 (289)
T KOG0567|consen  131 DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDS  200 (289)
T ss_pred             hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccch
Confidence            11100     0  00     011224444444433333333 2234444544322          345566777777777


Q ss_pred             hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHH
Q 043950          207 EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA  284 (458)
Q Consensus       207 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~  284 (458)
                      .-.+..+..+++.+-.  +         -.++.|.+.|.+  .++-+|..|+.+|+.++.  +         ..++.|.+
T Consensus       201 alfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e  258 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E---------DCVEVLKE  258 (289)
T ss_pred             HHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H---------HHHHHHHH
Confidence            7888889999987742  1         235667777765  467799999999999874  2         24667788


Q ss_pred             HhccCChhhHHHHHHHHHHHhhc
Q 043950          285 LLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       285 ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      .+..+ ++-|++.+..++...-.
T Consensus       259 ~~~D~-~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  259 YLGDE-ERVVRESCEVALDMLEY  280 (289)
T ss_pred             HcCCc-HHHHHHHHHHHHHHHHH
Confidence            88877 88888888887776543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.16  E-value=0.0088  Score=50.75  Aligned_cols=176  Identities=15%  Similarity=0.164  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHcC-CChhhHHHHHhCCChHHHH
Q 043950           41 LEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED----YPQLQYEAAWALTNIAS-GTSMNTNVVIDHGAVPIFV  115 (458)
Q Consensus        41 ~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~  115 (458)
                      ..|+..|..++++  ++.+..+.++.+.-.|..+|...+    .+.+|..++.+++.+.. ++++....+.+.+++|..+
T Consensus        68 cnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   68 CNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            3466666677776  788889999988777888886543    24688999999999987 3456677788899999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhcCCCchhh-------HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 043950          116 KLLASPSDDVREQAVWALGNVAADSPGCRN-------LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPF  188 (458)
Q Consensus       116 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-------~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~  188 (458)
                      +.++.+++-.+..|..++..+..++....-       ...-..++..++..+...+++.+.++++.+...|+.+.  ...
T Consensus       146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--rar  223 (262)
T PF04078_consen  146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--RAR  223 (262)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--THH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH--HHH
Confidence            999999999999999999888766533211       11112356667777777889999999999999999874  223


Q ss_pred             hhhhhhHHHHHH-----hhcCCChHHHHHHHHHHHHh
Q 043950          189 DQVRPALPALAQ-----LIHLDDEEVLSDACWTLSYL  220 (458)
Q Consensus       189 ~~~~~~l~~l~~-----ll~~~~~~~~~~~~~~l~~l  220 (458)
                      ......+|....     .+-..|+.++...-..+.|+
T Consensus       224 ~aL~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  224 EALRQCLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             HHHHHHS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             HHHHHhCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            333444443111     11123566666655555554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.014  Score=57.28  Aligned_cols=222  Identities=12%  Similarity=0.073  Sum_probs=144.6

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhC
Q 043950           72 VEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREE  151 (458)
Q Consensus        72 ~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  151 (458)
                      +..+.++. +.++..+++.|..+... .+....+...+++.+.+..+++.++-+--+|+..+..+|...|        ..
T Consensus       733 i~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~  802 (982)
T KOG4653|consen  733 ISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------ED  802 (982)
T ss_pred             HHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hh
Confidence            34445555 67899999999999983 4556666677899999999999999999999999989886533        34


Q ss_pred             CHHHHHHHhcccc---cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhH
Q 043950          152 ALIPLLAQLNEHA---KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKI  228 (458)
Q Consensus       152 ~l~~l~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~  228 (458)
                      .++.+.....+.+   .++.+-.+-.++.++..............++...+...+++|...+..++..+++++.......
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v  882 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV  882 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence            6777777553222   2344445557777777665444444556677777788888888889999999999995433222


Q ss_pred             HHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCChhhHHHHHh---cCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950          229 QVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIIN---HGAVPCLLALLIHNHKKSIKKVACWTISN  304 (458)
Q Consensus       229 ~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~---~~~~~~l~~ll~~~~~~~v~~~a~~~l~n  304 (458)
                      ..+. ..++..++.+... ++..+|++|+..+..+..+.....-.+..   .+....+........+..++..|+.++-.
T Consensus       883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            2211 1234455555544 56778999999998888765544333221   12233333334444355566655555443

>PRK14707 hypothetical protein; Provisional

Probab=97.15  E-value=0.57  Score=51.39  Aligned_cols=399  Identities=17%  Similarity=0.096  Sum_probs=217.3

Q ss_pred             HHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           25 LPAMVAGVW--SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        25 i~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +..+++...  .++...+..+......+++.  ......+-..|+...|-.+-+=++++..+..+...-..++. ....+
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~--d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVASD--DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcCC--hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHH
Confidence            444555554  45677777766665665443  33444444445444444454556656777666665566666 45555


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH-HhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          103 NVVIDHGAVPIFVKLLAS-PSDDVREQAVWALG-NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      ..+-..| +-..++.|.. ++......++..+. .++ +++..+..+ +.-.+.-.++-+.+-++..+...+...+..=.
T Consensus       242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl  318 (2710)
T PRK14707        242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERL  318 (2710)
T ss_pred             HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence            5554445 5555555544 55555555555554 444 444444433 22234445555545566666565555444333


Q ss_pred             cCCCCCChhhh-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHH
Q 043950          181 KGKPQPPFDQV-RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWT  258 (458)
Q Consensus       181 ~~~~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~  258 (458)
                      .+.+.....+. .++-..|..+-+-+|..+...+...|..-...+++..+.+- ...+...+.-+.. ++......+...
T Consensus       319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            33333333333 33444455555667766666666665544434444444333 3344455544544 666666666666


Q ss_pred             HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHH
Q 043950          259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKK  338 (458)
Q Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~  338 (458)
                      |..=...+++..+.+ +...+.-++.-|..=++..+...++..|.--..+..+..+.+--.++...|-.+-+.+|..+..
T Consensus       398 LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~  476 (2710)
T PRK14707        398 LAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG  476 (2710)
T ss_pred             HHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence            654444455554443 4445555555555443777777777777776666666555444444454444455667878877


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHH-HHHHHHHhchhhcccCCCCCchhHHHHHHHhc
Q 043950          339 EAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE-GLENILKVGEAEKNTGSTIGDVNQYARLVEED  417 (458)
Q Consensus       339 ~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (458)
                      .++..|..-... +.+.++.|-..++...|-.+-+.++......++. +...+.. ..             .....|...
T Consensus       477 ~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~~-------------~l~~~~~~~  541 (2710)
T PRK14707        477 QTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-EL-------------QLRKAFDAH  541 (2710)
T ss_pred             HHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-ch-------------hhhhhhhhH
Confidence            777777665553 4455666655666777777777887654443333 3333321 11             124444455


Q ss_pred             chHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          418 EGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       418 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      +....+..+..+++.+....+..-|...+
T Consensus       542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l  570 (2710)
T PRK14707        542 QVVNTLKALSKWPDKQLCAVAASGLAERL  570 (2710)
T ss_pred             HHHHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence            55666667777777666665555554443

>PRK14707 hypothetical protein; Provisional

Probab=97.12  E-value=0.62  Score=51.16  Aligned_cols=381  Identities=15%  Similarity=0.093  Sum_probs=212.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH
Q 043950           37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLM-REDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFV  115 (458)
Q Consensus        37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  115 (458)
                      ......+++.-..+...  .....++... -+..|++-++ -+++.+.+..+......++.+ ...+..+-. .+|..++
T Consensus       137 ~~c~~a~a~i~~~~~~~--~~~~~~l~~~-~~~lllNafSKw~~~~~c~~aa~~la~~~~~~-d~~~~~~~~-q~ia~~l  211 (2710)
T PRK14707        137 GRCERAVARLARHLRRE--DKARQTLNAQ-NISLALNAFSKWSDNPDCQAVAPRFAALVASD-DRLRSAMDA-QGVATVL  211 (2710)
T ss_pred             hHHHHHHHHHHHHhccc--cchhhhhccc-cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-hhhhcccch-HHHHHHH
Confidence            44555555555555433  2222222222 2444444443 344467777777777777773 455555533 3466666


Q ss_pred             HhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHH-HHhhcCCCCCChhhh-
Q 043950          116 KLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTL-SKLCKGKPQPPFDQV-  191 (458)
Q Consensus       116 ~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l-~~l~~~~~~~~~~~~-  191 (458)
                      +-+..  +++..+..+...-..++.+ ...+..+ +...+-..++.+.+=++......+...+ ..+..+ +.....+. 
T Consensus       212 Na~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~  288 (2710)
T PRK14707        212 NALCKWPDTPDCGNAVSALAERLADE-SRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDP  288 (2710)
T ss_pred             HHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCH
Confidence            66655  4555555444444455444 3333332 3334555566664545554445444444 445443 22222232 


Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCChhhH
Q 043950          192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQT  270 (458)
Q Consensus       192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~  270 (458)
                      ..+-..+..+-+..+..+...+...+..-.-.+.+..+.+ +.-.+...+.-|+. ++..+...|...|..-...+++..
T Consensus       289 q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~  367 (2710)
T PRK14707        289 INVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELR  367 (2710)
T ss_pred             HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhh
Confidence            3444445556667787776666665554433444433322 23334444444444 665555555555544333355444


Q ss_pred             HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950          271 QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR  350 (458)
Q Consensus       271 ~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~  350 (458)
                      +.+ +...+..+++-+..=++..+...|+..|..-..+.++....+-..|+-..|-.+-+.++..+...++.+|.--+..
T Consensus       368 ~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~  446 (2710)
T PRK14707        368 KDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH  446 (2710)
T ss_pred             ccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc
Confidence            433 3445555555555543667777777777776666666666665566666555566678888888888888777654


Q ss_pred             CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC
Q 043950          351 GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD  430 (458)
Q Consensus       351 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  430 (458)
                       +.+.++.+-..++...|-.+-+.+|..+...+.+.|..=+..+..             ++..|.-.+....|..|..-+
T Consensus       447 -d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~P  512 (2710)
T PRK14707        447 -DTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWP  512 (2710)
T ss_pred             -cHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCC
Confidence             567677766666666666666789988877766666554443332             366666677778888888888


Q ss_pred             ChHHHHHHHHH
Q 043950          431 NNGIREKAVKI  441 (458)
Q Consensus       431 ~~~v~~~a~~~  441 (458)
                      +......|...
T Consensus       513 d~~~c~~A~~~  523 (2710)
T PRK14707        513 DTPICAEAASA  523 (2710)
T ss_pred             CcHHHHHHHHH
Confidence            76655444333

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.12  E-value=0.006  Score=60.18  Aligned_cols=191  Identities=17%  Similarity=0.110  Sum_probs=129.0

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh--------HHhh----hCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950          111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN--------LVLR----EEALIPLLAQLNEHAKLSMLRIATWTLSK  178 (458)
Q Consensus       111 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--------~~~~----~~~l~~l~~~l~~~~~~~~~~~a~~~l~~  178 (458)
                      ...++.+|+.  +++-..+..++.-+..+++....        .+.+    ...+|.++..+. ......+.....+|.+
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-TAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-cCCccchhHHHHHHHH
Confidence            3455556644  34445566677766665543211        1111    245777777774 3444556677778888


Q ss_pred             hhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC---ccchhh
Q 043950          179 LCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS---PSVLTP  254 (458)
Q Consensus       179 l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~~~~~  254 (458)
                      ...+.|.. -......++|.+.+.+.-+|..++...+.++.-+....+......++ -+++.+..+-.+++   ..+|..
T Consensus       894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence            77765432 22334778888889999999999999999998877555544443333 36788887777655   468999


Q ss_pred             HHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950          255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT  306 (458)
Q Consensus       255 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~  306 (458)
                      |+.++..+.+.-|...-..+...++..+.+.|.++ ...||++|..+=.++.
T Consensus       973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhhh
Confidence            99999999986665555555667899999999988 8889999987655543

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.26  Score=45.78  Aligned_cols=258  Identities=13%  Similarity=0.098  Sum_probs=141.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCCc-hhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChh-hhhhhHH
Q 043950          119 ASPSDDVREQAVWALGNVAADSPG-CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFD-QVRPALP  196 (458)
Q Consensus       119 ~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~  196 (458)
                      .+++..++..|++.|+|.+...|. ++..  ..-.+..++..|-++.+.++.-.+..+|..+.....+.... ..-++.-
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial  345 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL  345 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence            457889999999999999988543 2222  23357777777767777889999988888877654322221 2244445


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhccCChhhHH-HHHH--hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHH
Q 043950          197 ALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQ-VVIE--AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCI  273 (458)
Q Consensus       197 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  273 (458)
                      .+..+..+.+++.+..+...++.++.......+ .+.+  .+....++-.+.++++. ...||+.....+..+- ..+..
T Consensus       346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~-va~ACr~~~~~c~p~l-~rke~  423 (533)
T KOG2032|consen  346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY-VARACRSELRTCYPNL-VRKEL  423 (533)
T ss_pred             HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH-HHHHHHHHHHhcCchh-HHHHH
Confidence            577888899999999999988888743332222 1221  11223333334445543 3456666656554221 11111


Q ss_pred             HhcCChHHHHHHhccCChhhHHH-HHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950          274 INHGAVPCLLALLIHNHKKSIKK-VACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT  352 (458)
Q Consensus       274 ~~~~~~~~l~~ll~~~~~~~v~~-~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  352 (458)
                        .+.++..   ++.. -...+. ..-| ...+....++....+..     ...-++++.-+.++..+...-.+...+-.
T Consensus       424 --~~~~q~~---ld~~-~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~t~~~vd~l~  491 (533)
T KOG2032|consen  424 --YHLFQES---LDTD-MARFQAFYNQW-CIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLKTTRSVDSLV  491 (533)
T ss_pred             --HHHHhhh---hHHh-HHHHHHHHHHH-HHHHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHHHHHHHHHhH
Confidence              1122211   1111 111111 1112 11122223333222222     12223444445666666666666665544


Q ss_pred             HHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 043950          353 HEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILK  392 (458)
Q Consensus       353 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~  392 (458)
                      +..+...-.......+..+...+-++++..+.+++..+..
T Consensus       492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            4554444333445566667778888999999998887654

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.047  Score=53.79  Aligned_cols=226  Identities=10%  Similarity=0.013  Sum_probs=143.8

Q ss_pred             HHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHh
Q 043950          155 PLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEA  234 (458)
Q Consensus       155 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  234 (458)
                      .-+..+ .++.+.++..++..++.+.+...........+++......+++.|+-+--.++..+..+|.-.+        .
T Consensus       731 eai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e  801 (982)
T KOG4653|consen  731 EAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------E  801 (982)
T ss_pred             HHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------h
Confidence            333344 5566778999999999999876555666668999999999999999999999998888775433        3


Q ss_pred             CcHHHHHHH-hCC---CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH
Q 043950          235 GVCRRLVEL-LGH---PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR  310 (458)
Q Consensus       235 ~~i~~L~~l-l~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~  310 (458)
                      .+++.+... ...   ...+.+...-.++.+++..-.+....... .++..++...+++ +...|..++..++++|.-..
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a  879 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLA  879 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHh
Confidence            456666663 222   22345555667777776544443333332 5667777777877 88889999999999985221


Q ss_pred             HHHH-HHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHhhcCCCHHHHHHH--HHCCChHHHHhhccC-CCHHHHHHHHH
Q 043950          311 EQIQ-AVIDAGLIVPLVNVLQ-DAEFDIKKEAALAIANATVRGTHEQIKYL--VREGCIKPLCDLLLC-VDPKIVTVCLE  385 (458)
Q Consensus       311 ~~~~-~l~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l--~~~~~l~~L~~ll~~-~~~~v~~~~~~  385 (458)
                      -... .+.+  ++..++.+.. ++.+.+|..|+..+..+..+.+.+....+  .-.+....+..+... +++.++..+..
T Consensus       880 ~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql  957 (982)
T KOG4653|consen  880 FQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL  957 (982)
T ss_pred             hhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            1111 1112  3444455444 45788999999999999876554444432  122344444444443 44445555555


Q ss_pred             HHHHHHHh
Q 043950          386 GLENILKV  393 (458)
Q Consensus       386 ~l~~l~~~  393 (458)
                      ++..+-..
T Consensus       958 ~leei~a~  965 (982)
T KOG4653|consen  958 CLEEIQAA  965 (982)
T ss_pred             HHHHHHHH
Confidence            55554433

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.25  Score=48.18  Aligned_cols=132  Identities=19%  Similarity=0.204  Sum_probs=92.5

Q ss_pred             HHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 043950          238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI  317 (458)
Q Consensus       238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~  317 (458)
                      +.+-+++.+.++-+|......++---.+..       +.+++..|+..-.++.+.+||+.|.-+|+-++..++++     
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-----  589 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-----  589 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-----
Confidence            445556666777777776665532211111       23567777777555558999999999999999877764     


Q ss_pred             HcCChHHHHHHhcc-CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950          318 DAGLIVPLVNVLQD-AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       318 ~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~  393 (458)
                          .+..+.+|.. -++.||.-++.+|+-.|.+.....        .+..|..+..++..-||+.|+-++..|+..
T Consensus       590 ----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q  654 (929)
T KOG2062|consen  590 ----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQ  654 (929)
T ss_pred             ----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence                5556666754 489999999999999988643222        255566777778888999999888877654

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.03  E-value=0.011  Score=57.68  Aligned_cols=234  Identities=14%  Similarity=0.028  Sum_probs=149.9

Q ss_pred             HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950           20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ...|++..|..+..-..+...++...+|..-....+...      ..+++.+...+.....-.-..+++.++.|+++.+.
T Consensus       501 Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~  574 (748)
T KOG4151|consen  501 IKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISE  574 (748)
T ss_pred             ccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcch
Confidence            345677777777777777777777777772223321111      13556666665544322335678999999999888


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950          100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l  179 (458)
                      ..+..+...-.++.+-.++...++..++.++..+.||....--+...+.+...-.++........++.+...++.++..+
T Consensus       575 s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I  654 (748)
T KOG4151|consen  575 SDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAI  654 (748)
T ss_pred             hhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccch
Confidence            88888888777888788888899999999999999998766555555555332223333332445555666666666645


Q ss_pred             hcCCCCCC--hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHH
Q 043950          180 CKGKPQPP--FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW  257 (458)
Q Consensus       180 ~~~~~~~~--~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  257 (458)
                      .....+..  ..........+..++.+.+.+++...+.++.|+.....+....+.....++.+..+-.-.....++.+..
T Consensus       655 ~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~  734 (748)
T KOG4151|consen  655 TSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAP  734 (748)
T ss_pred             hhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhh
Confidence            44432222  3444666778888999999999999999999876555555565666655555554433333333444444


Q ss_pred             HH
Q 043950          258 TV  259 (458)
Q Consensus       258 ~l  259 (458)
                      +|
T Consensus       735 ~l  736 (748)
T KOG4151|consen  735 CL  736 (748)
T ss_pred             HH
Confidence            43

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.01  E-value=0.36  Score=46.48  Aligned_cols=182  Identities=15%  Similarity=0.100  Sum_probs=114.3

Q ss_pred             HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950           20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ++...+..++...+. +.....-|+..+.++...- ++...     ..+..++.|+.+++ ..||..|++.|-.+|.+++
T Consensus        20 ~~~~~y~~il~~~kg-~~k~K~Laaq~I~kffk~F-P~l~~-----~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~   91 (556)
T PF05918_consen   20 QHEEDYKEILDGVKG-SPKEKRLAAQFIPKFFKHF-PDLQE-----EAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNP   91 (556)
T ss_dssp             GGHHHHHHHHHGGGS--HHHHHHHHHHHHHHHCC--GGGHH-----HHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--
T ss_pred             cCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhC-hhhHH-----HHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHH
Confidence            344567777777775 6778888999999987764 33333     36889999999999 8999999999999999888


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc--ccccHHHHHHHHHHHH
Q 043950          100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN--EHAKLSMLRIATWTLS  177 (458)
Q Consensus       100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~~~~a~~~l~  177 (458)
                      +....+     ..+|+++|.+.++.-...+-.+|..+...++.        +.+..++..+.  .+.++.+++.++..|.
T Consensus        92 ~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   92 EHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            877766     58999999998887777787888777544432        34566676664  2567778998887775


Q ss_pred             HhhcC-CCCC---ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 043950          178 KLCKG-KPQP---PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY  222 (458)
Q Consensus       178 ~l~~~-~~~~---~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~  222 (458)
                      .-... .+..   ..+....++..+...|.+-..+--...+.+|..+-.
T Consensus       159 ~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~  207 (556)
T PF05918_consen  159 EKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI  207 (556)
T ss_dssp             HHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred             HHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence            43322 2222   233445666667777765333334445555555543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.90  E-value=0.021  Score=58.04  Aligned_cols=160  Identities=23%  Similarity=0.226  Sum_probs=124.4

Q ss_pred             CCHHHHHHhhcC----CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCC
Q 043950           66 GVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADS  140 (458)
Q Consensus        66 ~~i~~L~~ll~~----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~  140 (458)
                      .+.|.+++.+..    ++ |++|..|.-+|+.+..-+.++...     -+|.|+..+. ++++.+|.+++.+++.++..-
T Consensus       919 ~f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            367788888843    44 899999999999998866665443     3789999887 699999999999999998776


Q ss_pred             CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950          141 PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL  220 (458)
Q Consensus       141 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l  220 (458)
                      |...+.     .-+.+...+ .+.++.+++.|.-++++|..+    .+..+.|.++.+...+.++++.+..-|=..+..+
T Consensus       993 pnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  993 PNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             ccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            664333     345677777 788999999999999999876    3556789999999999999999998888888877


Q ss_pred             ccCChhhHHHHHHhCcHHHHHHHhCCC
Q 043950          221 SYGTNDKIQVVIEAGVCRRLVELLGHP  247 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~i~~L~~ll~~~  247 (458)
                      +...+...      +++|-++.-|.++
T Consensus      1063 s~k~n~iy------nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGNTIY------NLLPDILSRLSNG 1083 (1251)
T ss_pred             hhcccchh------hhchHHHHhhccC
Confidence            75443221      3566666666655

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.87  E-value=0.035  Score=46.30  Aligned_cols=142  Identities=13%  Similarity=0.013  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh
Q 043950          296 KVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD-----AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCD  370 (458)
Q Consensus       296 ~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~  370 (458)
                      ..|...+..++++ ++....+.+..+=-.+..+|..     +.+..|..++.+++.+++.++.+...++...++++..++
T Consensus        97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            3455555555555 4667777776655555555543     356789999999999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH-----HHHHhhhcCCChHHHHHHHHHHHHh
Q 043950          371 LLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF-----KKIEGLKSHDNNGIREKAVKILETY  445 (458)
Q Consensus       371 ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l~~~~~~~v~~~a~~~l~~~  445 (458)
                      .++...+.-+..+..++.+|+-.+......|          +..++...+     +.+..+.+.+++.+-+.+.++..+.
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~GL~YiC----------qt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrL  245 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDVGLYYIC----------QTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRL  245 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhccccHHHHH----------HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            9999998888899999999998877765442          222222221     2233556667777766666665555


Q ss_pred             cCC
Q 043950          446 WCG  448 (458)
Q Consensus       446 ~~~  448 (458)
                      .+.
T Consensus       246 sdn  248 (293)
T KOG3036|consen  246 SDN  248 (293)
T ss_pred             cCC
Confidence            443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.85  E-value=0.024  Score=50.92  Aligned_cols=111  Identities=15%  Similarity=0.197  Sum_probs=85.5

Q ss_pred             CcHHHHH-HHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHH
Q 043950          235 GVCRRLV-ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQ  312 (458)
Q Consensus       235 ~~i~~L~-~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~  312 (458)
                      +++..++ ..+.+++..+|+.|+.++|-.+-.+.+...     ..++.+...++.+ +..++..|+.++..+.. +....
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence            3454444 778888999999999999999887764443     3467788888777 88999999999999986 33333


Q ss_pred             HHHHH-------HcCChHHHHHHhccCChhhHHHHHHHHHHhhcCC
Q 043950          313 IQAVI-------DAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG  351 (458)
Q Consensus       313 ~~~l~-------~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  351 (458)
                      .....       ...++..+.+.+.+.+++++..|+.+++.+...+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            33222       2457888888999999999999999999998765

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.84  E-value=0.056  Score=55.20  Aligned_cols=149  Identities=15%  Similarity=0.180  Sum_probs=115.5

Q ss_pred             hhhhhhhHHHHHHhhc----CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHHHhHh
Q 043950          188 FDQVRPALPALAQLIH----LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWTVGNI  262 (458)
Q Consensus       188 ~~~~~~~l~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~l~~l  262 (458)
                      ......+.|.+.+..+    .+||+++..|.-+++.++.-+.....     .-++.|+..+. ++++.+|.++.-+++.+
T Consensus       914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDl  988 (1251)
T KOG0414|consen  914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDL  988 (1251)
T ss_pred             HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccch
Confidence            3444667777777774    56799999999999999865554322     24688898887 68999999999999999


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHH
Q 043950          263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL  342 (458)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~  342 (458)
                      +-..+...+     ..-+.|...|.+. ++.||+.|..+++++....     .+--.|.++.+...+.+++.+++.-|-.
T Consensus       989 av~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen  989 AVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred             hhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence            865554333     3456677888888 9999999999999998632     1223689999999999999999999988


Q ss_pred             HHHHhhcCCC
Q 043950          343 AIANATVRGT  352 (458)
Q Consensus       343 ~L~~l~~~~~  352 (458)
                      .+..+...++
T Consensus      1058 FF~Els~k~n 1067 (1251)
T KOG0414|consen 1058 FFKELSSKGN 1067 (1251)
T ss_pred             HHHHhhhccc
Confidence            8888877653

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.83  E-value=0.08  Score=48.92  Aligned_cols=221  Identities=13%  Similarity=0.143  Sum_probs=129.5

Q ss_pred             HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccc
Q 043950           86 EAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHA  164 (458)
Q Consensus        86 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~  164 (458)
                      .|+++|-.+....+.....+.+.+++..+++.++..-....+.  .-...-.... +........ +   +   .+ .-.
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-~---~---~i-~~~   72 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-G---Y---SI-SYQ   72 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-c---c---cc-CHH
Confidence            4677777887777777888889999999999985432222210  0000000000 111110000 0   0   00 000


Q ss_pred             cHHHHHHHHHHHHHhhc-CC--CCCChhhh--hhhHHHHHHhhcCCC---hHHHHHHHHHHHHhccCChhhHHHHHHhCc
Q 043950          165 KLSMLRIATWTLSKLCK-GK--PQPPFDQV--RPALPALAQLIHLDD---EEVLSDACWTLSYLSYGTNDKIQVVIEAGV  236 (458)
Q Consensus       165 ~~~~~~~a~~~l~~l~~-~~--~~~~~~~~--~~~l~~l~~ll~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  236 (458)
                      ...+.+..+.++..+.. ..  ........  ..++..|...+.+..   +.+...++..+..+..+.+.....+.+.|+
T Consensus        73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl  152 (379)
T PF06025_consen   73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL  152 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence            11233444444444444 22  11111122  344555666666553   788899999999999888888888999999


Q ss_pred             HHHHHHHhC-C---CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhh--HHH-HHH----HHHHHh
Q 043950          237 CRRLVELLG-H---PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKS--IKK-VAC----WTISNI  305 (458)
Q Consensus       237 i~~L~~ll~-~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--v~~-~a~----~~l~nl  305 (458)
                      .+.+++.+. .   ++.++....-.+++.+|- +....+.+.+.+.++.+.+++.++ +.-  .+. ..+    ..+-.+
T Consensus       153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~-~~~~~l~~~d~a~~lG~~~DEL  230 (379)
T PF06025_consen  153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP-DYVKALRRRDTASNLGNSFDEL  230 (379)
T ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH-HHHHHhcccchHHHHHHHHHHH
Confidence            999999988 4   344555555667777776 566668888899999999999877 431  111 233    344445


Q ss_pred             hcCCHHHHHHHHH
Q 043950          306 TAGNREQIQAVID  318 (458)
Q Consensus       306 ~~~~~~~~~~l~~  318 (458)
                      .+|.|.....+++
T Consensus       231 ~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  231 MRHHPSLKPDIID  243 (379)
T ss_pred             HccCHHHHHHHHH
Confidence            5677665555444

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.79  E-value=0.0025  Score=47.11  Aligned_cols=73  Identities=18%  Similarity=0.253  Sum_probs=61.0

Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          277 GAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                      .++..|+++|..+.++.+...||.=|+.++...|..+..+-+.|+-..+++++.++|++|+.+|+.++..++.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3688899999555488899999999999999777777777788999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.45  Score=44.26  Aligned_cols=160  Identities=15%  Similarity=0.112  Sum_probs=94.2

Q ss_pred             HHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH-HhCCCCccch
Q 043950          174 WTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE-LLGHPSPSVL  252 (458)
Q Consensus       174 ~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~  252 (458)
                      ..+..+..............++..+..-..+++..++..++++|+|++...++........ .+..++. +....+.+|.
T Consensus       239 Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~  317 (533)
T KOG2032|consen  239 AFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQ  317 (533)
T ss_pred             HHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHH
Confidence            3344444433222233345556666666667788999999999999998855554434333 3444444 4444567788


Q ss_pred             hhHHHHHhHhhcCCh--hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc--C--CHHHHHHHHHcCChHHHH
Q 043950          253 TPALWTVGNIVMGDD--FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA--G--NREQIQAVIDAGLIVPLV  326 (458)
Q Consensus       253 ~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~--~~~~~~~l~~~~~~~~L~  326 (458)
                      ..++.+|..+...-.  .....+  .++.-.+..+..+. ++++|..|...++.++.  +  -++..-.-+..+..+ +.
T Consensus       318 leam~~Lt~v~~~~~~~~l~~~~--l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-ll  393 (533)
T KOG2032|consen  318 LEAMKCLTMVLEKASNDDLESYL--LNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LL  393 (533)
T ss_pred             HHHHHHHHHHHHhhhhcchhhhc--hhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ce
Confidence            888888877654221  111111  24555677888888 89999999998888875  2  222222222333433 44


Q ss_pred             HHhccCChhhHH
Q 043950          327 NVLQDAEFDIKK  338 (458)
Q Consensus       327 ~ll~~~~~~~~~  338 (458)
                      ..+++.++.+-.
T Consensus       394 lhl~d~~p~va~  405 (533)
T KOG2032|consen  394 LHLQDPNPYVAR  405 (533)
T ss_pred             eeeCCCChHHHH
Confidence            445666665543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.78  E-value=0.22  Score=48.34  Aligned_cols=129  Identities=16%  Similarity=0.098  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC
Q 043950          168 MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP  247 (458)
Q Consensus       168 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  247 (458)
                      +.+.+..++..+-..+  .....+.+.+..+.+...+++..++..++..+..++......-+ .+-.++...+..-+.+.
T Consensus        62 Il~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~Dr  138 (892)
T KOG2025|consen   62 ILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLKDR  138 (892)
T ss_pred             HHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHhcc
Confidence            4444444444444332  23336678888888888899999999999999999864433323 44456778888888889


Q ss_pred             CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950          248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN  304 (458)
Q Consensus       248 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n  304 (458)
                      .+.||..|+.+|+.+=....+.     +..+...+..+++.+++++||+.|...+.+
T Consensus       139 ep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  139 EPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             CchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            9999999999999996322111     135677888999988899999987655544

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.77  E-value=0.073  Score=45.35  Aligned_cols=146  Identities=14%  Similarity=0.028  Sum_probs=99.5

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-----ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 043950          297 VACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-----EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL  371 (458)
Q Consensus       297 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l  371 (458)
                      .|...+..++++ ++.+..+++..+.-.|...++..     -+.+|...+.+++.+++..+++...++.+.+.++.-.+.
T Consensus        69 naLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~  147 (262)
T PF04078_consen   69 NALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI  147 (262)
T ss_dssp             HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred             HHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence            344444455554 57788888888776677776543     366899999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH-HHHHhhhcCCChHHHHHHHHHHHHhcCCC
Q 043950          372 LLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF-KKIEGLKSHDNNGIREKAVKILETYWCGR  449 (458)
Q Consensus       372 l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  449 (458)
                      ++..++-.+..|..++.+++..+......|+.      .-.++.=...+ ..+..+..++++++-+...+...+..+..
T Consensus       148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t------~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  148 MEFGSELSKTVATFILQKILLDDVGLNYICQT------AERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSS------HHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHhccHHHHHHHHHHHHHHHcchhHHHHHhcC------HHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            99988888888999999999988877655442      11111112222 33445677888887766666655555443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.49  Score=46.35  Aligned_cols=301  Identities=17%  Similarity=0.085  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHcC--CChhhHHHHHhCCC
Q 043950           40 QLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-------DYPQLQYEAAWALTNIAS--GTSMNTNVVIDHGA  110 (458)
Q Consensus        40 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~~~  110 (458)
                      -.+|+..+....+..+..     .=.|+++.++..+...       +.+.-.+-|++.+.++..  ..+....-+.+.-+
T Consensus       387 dlaal~fl~~~~sKrke~-----TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fi  461 (970)
T COG5656         387 DLAALFFLIISKSKRKEE-----TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFI  461 (970)
T ss_pred             hHHHHHHHHHHhcccchh-----hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHH
Confidence            345666666655543211     1247899999988321       123445667788877765  23333344455556


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhh
Q 043950          111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ  190 (458)
Q Consensus       111 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  190 (458)
                      ++.++..++++..-++..++..++.+..+-+.   ...-..+.+...+.+ .+++-.++..|+-++.-+..+. ......
T Consensus       462 v~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~  536 (970)
T COG5656         462 VNHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKF  536 (970)
T ss_pred             HHHhhHhhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHH
Confidence            77777888888888999999999999544332   223334566667777 4466678888888888877764 222222


Q ss_pred             h---hhhHHHHHHhhcCCChHHHHHHHHHHH-HhccCChhhHHHHHHh---CcHHHHHHHhCCCC------ccchhhHHH
Q 043950          191 V---RPALPALAQLIHLDDEEVLSDACWTLS-YLSYGTNDKIQVVIEA---GVCRRLVELLGHPS------PSVLTPALW  257 (458)
Q Consensus       191 ~---~~~l~~l~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~------~~~~~~a~~  257 (458)
                      .   .+.++.+..+-+.-+.++...++..+. ..+..-......+...   .++.....++.+++      ++-...|.+
T Consensus       537 sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasG  616 (970)
T COG5656         537 SAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASG  616 (970)
T ss_pred             HhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHH
Confidence            2   344444444444445556555555432 2221111111111111   12333333443331      122334444


Q ss_pred             HHhHhhc-----C-ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc
Q 043950          258 TVGNIVM-----G-DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD  331 (458)
Q Consensus       258 ~l~~l~~-----~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~  331 (458)
                      .|..+..     . .+...+.+ .....|.+--.+.+. ..++-.+|+..+-+..-...+ +. -+.-|+.+.+.+++.+
T Consensus       617 iL~T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~-pimwgi~Ell~~~l~~  692 (970)
T COG5656         617 ILRTIESMILSLENRPLVLKYL-EVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IE-PIMWGIFELLLNLLID  692 (970)
T ss_pred             HHHHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hh-hhhhHHHHHHHhcccc
Confidence            4443321     1 12222222 334566666666666 677778888887776532211 11 1122456666666666


Q ss_pred             CC-hhhHHHHHHHHHHhhcCCCHH
Q 043950          332 AE-FDIKKEAALAIANATVRGTHE  354 (458)
Q Consensus       332 ~~-~~~~~~a~~~L~~l~~~~~~~  354 (458)
                      .. .....++.-++.|+...|..+
T Consensus       693 ~~t~~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         693 EITAVYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             cchhhhHHHHHHHHHHHHHhCccc
Confidence            55 366788899999998876433

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.70  E-value=0.35  Score=44.80  Aligned_cols=102  Identities=13%  Similarity=0.144  Sum_probs=76.2

Q ss_pred             HHHh-CCChHHHHHhhCC---CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-c--cccHHHHHHHHHHH
Q 043950          104 VVID-HGAVPIFVKLLAS---PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-E--HAKLSMLRIATWTL  176 (458)
Q Consensus       104 ~~~~-~~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~--~~~~~~~~~a~~~l  176 (458)
                      -+++ ...+..|...+++   -.+.+-..|+.++..+..+.|..-..+.+.|.++.++..+. .  .++.++....-.++
T Consensus       100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l  179 (379)
T PF06025_consen  100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL  179 (379)
T ss_pred             cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence            3445 4556666667765   34788889999999999999999899999999999999996 2  25677888888888


Q ss_pred             HHhhcCCCCCChhhhhhhHHHHHHhhcCC
Q 043950          177 SKLCKGKPQPPFDQVRPALPALAQLIHLD  205 (458)
Q Consensus       177 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~  205 (458)
                      ..+|-+..........+.++.+.+.+.++
T Consensus       180 ~AicLN~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  180 SAICLNNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             hHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence            88888765444444467777777766543

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.67  E-value=0.16  Score=46.74  Aligned_cols=147  Identities=14%  Similarity=0.164  Sum_probs=101.8

Q ss_pred             CHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHH-HHHhccCChhhHHH
Q 043950          152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWT-LSYLSYGTNDKIQV  230 (458)
Q Consensus       152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~-l~~l~~~~~~~~~~  230 (458)
                      .+..+++.+.++.+...+..|+..|..++.+.+.+-+....-.+..+++.-.+.++++...|..+ +..++.+.+..   
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---  406 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---  406 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence            56677788866688889999999999999998766666667777777777777777666655554 33344444421   


Q ss_pred             HHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          231 VIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       231 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                           -+..+..++.+.++..-..++..+..++..-+...-..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus       407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                 233444555556666666667677777654332222222357899999999999 99999999999998874

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.65  E-value=0.038  Score=54.82  Aligned_cols=155  Identities=16%  Similarity=0.113  Sum_probs=113.6

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHH
Q 043950          192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ  271 (458)
Q Consensus       192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  271 (458)
                      ..++|.+...+.+.+...+..-+.+|.++..+-+...-.---..++|.|++.|.-++..+|..++.++..+....+....
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t  945 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT  945 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence            67889999988888888888888888888866554221111125788899999999999999999999888766655433


Q ss_pred             HHHhcCChHHHHHHhccCCh---hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhh
Q 043950          272 CIINHGAVPCLLALLIHNHK---KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANAT  348 (458)
Q Consensus       272 ~~~~~~~~~~l~~ll~~~~~---~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~  348 (458)
                      .-. ..++|.++.+-.+. +   ..||..|..++..+...-|...-......++..++..|.++...+|++|..+=.+..
T Consensus       946 ~~~-~Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  946 EHL-STLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHH-hHHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            333 34778887777766 4   578999999999998733333333344457888888999888889999987755543

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.099  Score=49.21  Aligned_cols=155  Identities=15%  Similarity=0.204  Sum_probs=104.0

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH-hCCCCccchhhHHHHHhHhhcCChhhHHHHHh
Q 043950          197 ALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL-LGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN  275 (458)
Q Consensus       197 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  275 (458)
                      .+.+++.+.|+-.+.....+++---....       ..|++..++.. +++.+.++|+.|.-+|+-+|..++        
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence            45677777787777766655532111111       23566677766 667889999999999999987554        


Q ss_pred             cCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHH
Q 043950          276 HGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQ  355 (458)
Q Consensus       276 ~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  355 (458)
                       +.+...+++|..++++.||...+.+|+-.|.++..+.       .+..|-.++.+.+.-||+.|+.+++-+...++++.
T Consensus       585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence             4577778888877799999999999999887543321       34556666677777889999999988877665443


Q ss_pred             HHHHHHCCChHHHHhhccCCC
Q 043950          356 IKYLVREGCIKPLCDLLLCVD  376 (458)
Q Consensus       356 ~~~l~~~~~l~~L~~ll~~~~  376 (458)
                      ...+  .+..+.+.+.+..++
T Consensus       657 np~v--~~I~k~f~~vI~~Kh  675 (926)
T COG5116         657 NPNV--KRIIKKFNRVIVDKH  675 (926)
T ss_pred             ChhH--HHHHHHHHHHHhhhh
Confidence            2221  123445555544433

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.63  E-value=0.17  Score=45.51  Aligned_cols=172  Identities=15%  Similarity=0.102  Sum_probs=109.1

Q ss_pred             CCHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-c-
Q 043950           66 GVVPRFV-EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP-G-  142 (458)
Q Consensus        66 ~~i~~L~-~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~-  142 (458)
                      +++..|+ ..+++.+ +.+|+.|+.+|+-.+--+.+...     ..++.+.+.++.++..++..|+.++..+..... . 
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            3454444 6677888 89999999999999885553333     236778888877899999999999998874321 1 


Q ss_pred             hhhHH------hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH-hhc---CCChHHHHH
Q 043950          143 CRNLV------LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQ-LIH---LDDEEVLSD  212 (458)
Q Consensus       143 ~~~~~------~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~---~~~~~~~~~  212 (458)
                      ....-      .....+..+.+.+ .+.+++++..++..++.|........   ...++..|+- ++.   .++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            11111      1123445555556 56688899999999999887653333   2334444332 222   234566666


Q ss_pred             HHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC
Q 043950          213 ACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS  248 (458)
Q Consensus       213 ~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  248 (458)
                      .-..+-..+..+.... ..+...+++.+..+...+.
T Consensus       176 L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~~  210 (298)
T PF12719_consen  176 LSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAPD  210 (298)
T ss_pred             HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCcc
Confidence            6666666665555443 3555667777777766543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.57  E-value=0.018  Score=45.95  Aligned_cols=136  Identities=13%  Similarity=0.166  Sum_probs=97.4

Q ss_pred             CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHH-HcCChHH
Q 043950          246 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI-DAGLIVP  324 (458)
Q Consensus       246 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~~~~~~  324 (458)
                      ...+++|..+.-++..+..    ....-....+-+.+-..+..+ +.+-...+..++..+.-+.++....++ ..|+++.
T Consensus        16 ~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~   90 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES   90 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence            3567789999999988842    222222233455555666665 677788899999999888888877776 6789999


Q ss_pred             HHHHhc--cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHH-HHHHHHHHHHH
Q 043950          325 LVNVLQ--DAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPK-IVTVCLEGLEN  389 (458)
Q Consensus       325 L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~-v~~~~~~~l~~  389 (458)
                      +..+..  .++..++..++.++..-+.  +...+.. +.+.+++.|....+ ++++. ++..++-+|.+
T Consensus        91 l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   91 LLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            999998  7789999999999988876  4454444 45567999999995 45555 67777666654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.32  E-value=0.43  Score=44.04  Aligned_cols=172  Identities=11%  Similarity=0.081  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCChh-hhhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh
Q 043950          167 SMLRIATWTLSKLCKGKPQPPFD-QVRPALPALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL  244 (458)
Q Consensus       167 ~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll  244 (458)
                      +-+..|..-|..+.......-.. ....++..+.+.+.+ .+..++..+++.|..++.+.+.....-.+ -.+..++..-
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa  380 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAA  380 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHH
Confidence            33444544344333332222222 225566667777776 77888999999999999776644321111 1344555555


Q ss_pred             CCCCccchhhHHHHHh-HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCh
Q 043950          245 GHPSPSVLTPALWTVG-NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLI  322 (458)
Q Consensus       245 ~~~~~~~~~~a~~~l~-~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~  322 (458)
                      .+..+.+...|..... -++...+...        +..+..++.+. |...-..+...+..++.. ..+....++. .+.
T Consensus       381 ~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-dia  450 (516)
T KOG2956|consen  381 KDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-DIA  450 (516)
T ss_pred             hCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-hhh
Confidence            5665555555555443 3444444332        33344444445 666666666677777753 3344333333 599


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          323 VPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       323 ~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                      |.+++...+.+..||+.|++||..+..
T Consensus       451 P~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  451 PCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            999999999999999999999999875

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.31  E-value=0.03  Score=46.47  Aligned_cols=112  Identities=15%  Similarity=0.212  Sum_probs=79.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC--------CCCHHHHHHHHHHHHHH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR--------EDYPQLQYEAAWALTNI   94 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--------~~~~~i~~~a~~~L~~l   94 (458)
                      .....+++.+++.....  ..+..|...+...+....+.+++.|++..|+++|..        ..+.++...+++|+..+
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34566778787655432  444444444444334457788888999999998842        12357889999999999


Q ss_pred             cCCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043950           95 ASGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVA  137 (458)
Q Consensus        95 ~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  137 (458)
                      .. +......++. .+++..|+..+.+++..++..++.+|+.+|
T Consensus       144 ~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             Hc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            98 4666666665 688999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.26  E-value=0.15  Score=43.72  Aligned_cols=105  Identities=23%  Similarity=0.244  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHH
Q 043950          336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLV  414 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  414 (458)
                      ....|+..|--++.-. +.....+.+...++.++++++ ...+.+...++.+|..++-..+..             ...|
T Consensus       107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~F  172 (257)
T PF08045_consen  107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDF  172 (257)
T ss_pred             HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHH
Confidence            4556677776666653 355566678899999999995 456789999999999988776654             6689


Q ss_pred             HhcchHHHHHhhhcC--CChHHHHHHHHHHHHhcCCCCCCCC
Q 043950          415 EEDEGFKKIEGLKSH--DNNGIREKAVKILETYWCGRVVGPQ  454 (458)
Q Consensus       415 ~~~~~~~~l~~l~~~--~~~~v~~~a~~~l~~~~~~~~~~~~  454 (458)
                      ++.+|+..+..+.++  .+.+++-++...+--|+..|.+..+
T Consensus       173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~  214 (257)
T PF08045_consen  173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIP  214 (257)
T ss_pred             HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCC
Confidence            999999999999655  4678888999999888887766443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.24  E-value=2.1  Score=45.69  Aligned_cols=145  Identities=12%  Similarity=0.117  Sum_probs=98.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      +..++..+..+...+|-.|+++|..+...++.--.+..++.++.    .-+.++. ..+|+.|+..++......++....
T Consensus       818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~Dss-asVREAaldLvGrfvl~~~e~~~q  892 (1692)
T KOG1020|consen  818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSS-ASVREAALDLVGRFVLSIPELIFQ  892 (1692)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhccch-hHHHHHHHHHHhhhhhccHHHHHH
Confidence            55667777788899999999999999887532223333333333    3334555 699999999999877755555444


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                      ..     ..+..-+.++...||..++.++..+|...|.+....   .+...++... ++....++.-++.++.++-..+
T Consensus       893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~---~~cakmlrRv-~DEEg~I~kLv~etf~klWF~p  962 (1692)
T KOG1020|consen  893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV---DMCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP  962 (1692)
T ss_pred             HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH---HHHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence            33     445555556778999999999999998888763321   1233333333 3333448899999999988776

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.22  E-value=0.47  Score=46.20  Aligned_cols=105  Identities=21%  Similarity=0.136  Sum_probs=79.3

Q ss_pred             CCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHH
Q 043950          151 EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQV  230 (458)
Q Consensus       151 ~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~  230 (458)
                      |.+..+++.. .+++..++..++..+..+.............++...+..-+.+..+.++..|..+|+.+-..+.+.   
T Consensus        85 ~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---  160 (892)
T KOG2025|consen   85 GTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---  160 (892)
T ss_pred             HHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence            3444444444 667888999999999999986666666677888888988999999999999999999997332211   


Q ss_pred             HHHhCcHHHHHHHhCC-CCccchhhHHHHHhH
Q 043950          231 VIEAGVCRRLVELLGH-PSPSVLTPALWTVGN  261 (458)
Q Consensus       231 ~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~  261 (458)
                        +..+...+..++++ ++++||+.|+..+.+
T Consensus       161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  161 --ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             --cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence              23466777788876 688899998866644

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.19  E-value=0.0077  Score=32.85  Aligned_cols=29  Identities=24%  Similarity=0.373  Sum_probs=25.4

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          278 AVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       278 ~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      ++|.++++++++ +++||..|+++++.++.
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            368899999999 99999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.18  E-value=0.82  Score=46.12  Aligned_cols=176  Identities=16%  Similarity=0.196  Sum_probs=112.0

Q ss_pred             HHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH-HHHHHHcCChHHHHHHhccCCh-h
Q 043950          258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ-IQAVIDAGLIVPLVNVLQDAEF-D  335 (458)
Q Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~l~~~~~~~~L~~ll~~~~~-~  335 (458)
                      ++++....+++.+..+++.++...+...++.-....+...+...++|++...+.. .....+.--...+..++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            7889999999999999999999999999987656788999999999998632111 1111111011223333433333 6


Q ss_pred             hHHHHHHHHHHhhcCCCH--------HHHHHHHH--------------CCChHH-HHhhcc-CCCHHHHHHHHHHHHHHH
Q 043950          336 IKKEAALAIANATVRGTH--------EQIKYLVR--------------EGCIKP-LCDLLL-CVDPKIVTVCLEGLENIL  391 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~--------~~~~~l~~--------------~~~l~~-L~~ll~-~~~~~v~~~~~~~l~~l~  391 (458)
                      .-..|+..|..++..++.        .....+.+              ...+.. +..++. ++.+..+..|++++.++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            677777888887765321        00011111              112223 444444 345667788999999988


Q ss_pred             HhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cCCChHHHHHHHHHHHHhc
Q 043950          392 KVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SHDNNGIREKAVKILETYW  446 (458)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~  446 (458)
                      ...++             +.....+.|++..+.++. .+...+++..+..++..+.
T Consensus       654 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  654 EQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             HcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            76554             367777888899888873 2335667777777766543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.16  E-value=0.12  Score=54.40  Aligned_cols=165  Identities=16%  Similarity=0.083  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC
Q 043950          169 LRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS  248 (458)
Q Consensus       169 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  248 (458)
                      ...+.|+...+....+  -.....+.+..++..+..+...+|..|++|+..+...++..   +....+-..+..-+.+..
T Consensus       794 ~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dss  868 (1692)
T KOG1020|consen  794 DDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSS  868 (1692)
T ss_pred             chhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccch
Confidence            3445566666555422  11223677788888888888999999999999999776643   223334445556667778


Q ss_pred             ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHH
Q 043950          249 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNV  328 (458)
Q Consensus       249 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~l  328 (458)
                      ..||++|+..+|......++....     ..+.+.+-+.++ .-.||+.+...+..+|...|.. ..     +...+.++
T Consensus       869 asVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf-~~-----i~~~cakm  936 (1692)
T KOG1020|consen  869 ASVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDF-SK-----IVDMCAKM  936 (1692)
T ss_pred             hHHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh-hh-----HHHHHHHH
Confidence            889999999999998877766554     356677777777 7889999999999999765432 22     23334444


Q ss_pred             h---ccCChhhHHHHHHHHHHhhcC
Q 043950          329 L---QDAEFDIKKEAALAIANATVR  350 (458)
Q Consensus       329 l---~~~~~~~~~~a~~~L~~l~~~  350 (458)
                      +   .++...+++-+...+.++...
T Consensus       937 lrRv~DEEg~I~kLv~etf~klWF~  961 (1692)
T KOG1020|consen  937 LRRVNDEEGNIKKLVRETFLKLWFT  961 (1692)
T ss_pred             HHHhccchhHHHHHHHHHHHHHhcc
Confidence            4   333444788888888887653

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.04  E-value=0.16  Score=43.66  Aligned_cols=101  Identities=15%  Similarity=0.089  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh
Q 043950           39 LQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLL  118 (458)
Q Consensus        39 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  118 (458)
                      ....|++.|.-++--. ++....+.....++.|+++|.....+.++..++.+|..+..+++.+...+-+.+|+..++.++
T Consensus       107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            4455777777776654 666777778889999999996655589999999999999988999999999999999999999


Q ss_pred             CC--CCHHHHHHHHHHHHHhhcCC
Q 043950          119 AS--PSDDVREQAVWALGNVAADS  140 (458)
Q Consensus       119 ~~--~~~~~~~~a~~~L~~l~~~~  140 (458)
                      ++  .+.+++-.++..|.-+....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHccc
Confidence            87  55788888888887665443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.99  E-value=0.91  Score=39.09  Aligned_cols=204  Identities=18%  Similarity=0.103  Sum_probs=117.0

Q ss_pred             HHHHH-hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH
Q 043950          196 PALAQ-LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII  274 (458)
Q Consensus       196 ~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  274 (458)
                      +.++. +-+..+++.+...+.+|..++.+......     -++..+..+...+....+..+.+.+..+-..++...    
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence            34443 55677899999999999999976621112     245677777777766665566777777765554332    


Q ss_pred             hcCChHHHHHH---------hccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh-ccCChhhHHHHHHHH
Q 043950          275 NHGAVPCLLAL---------LIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL-QDAEFDIKKEAALAI  344 (458)
Q Consensus       275 ~~~~~~~l~~l---------l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll-~~~~~~~~~~a~~~L  344 (458)
                        +.+..++..         .......+.....+.++..+|...++...     .+++.+...+ ...++.++..++.++
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHH
Confidence              223333333         11111334555666788888876665322     2677788888 677888999999999


Q ss_pred             HHhhcCCCHHHHHHHHHCCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHH
Q 043950          345 ANATVRGTHEQIKYLVREGCIKPLCDLLLCV-DPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKI  423 (458)
Q Consensus       345 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  423 (458)
                      ..++...-.+....      ...+..-+..+ .+.+... +--+..++..+.-..         +.|.. + ....+..+
T Consensus       147 ~~Lc~~~vvd~~s~------w~vl~~~l~~~~rp~v~~~-l~~l~~l~~~~~~~~---------e~~~~-~-~~~~l~~l  208 (234)
T PF12530_consen  147 APLCEAEVVDFYSA------WKVLQKKLSLDYRPLVLKS-LCSLFALVPQGAVDS---------EEYEE-L-KRQILQLL  208 (234)
T ss_pred             HHHHHHhhccHHHH------HHHHHHhcCCccchHHHHH-HHHHHHHhccccCCh---------hhhhH-H-HHHHHHHH
Confidence            99985432232222      34444444433 3444333 222222333222221         11222 2 44558888


Q ss_pred             HhhhcCCChH
Q 043950          424 EGLKSHDNNG  433 (458)
Q Consensus       424 ~~l~~~~~~~  433 (458)
                      +++..+.+.+
T Consensus       209 W~~~~~~~~~  218 (234)
T PF12530_consen  209 WEYTSSSDVN  218 (234)
T ss_pred             Hhhccccccc
Confidence            8887776644

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.96  E-value=0.0096  Score=32.47  Aligned_cols=30  Identities=20%  Similarity=0.344  Sum_probs=26.0

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVR  350 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~  350 (458)
                      ++|.+++++++++++||..|+.+|+.++..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            368899999999999999999999999753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.96  E-value=0.2  Score=39.97  Aligned_cols=136  Identities=18%  Similarity=0.140  Sum_probs=93.5

Q ss_pred             CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH-hcCChHHH
Q 043950          204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCL  282 (458)
Q Consensus       204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l  282 (458)
                      ...++++..+.-++..+.+    ..+.-....+-+.+-.++...+.+-...++.++..+--..++....++ ..|+.+.+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL   91 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence            3567788888888877741    111122223445555666666666777888888888888888777777 77899999


Q ss_pred             HHHhc--cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-cCChh-hHHHHHHHHHH
Q 043950          283 LALLI--HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-DAEFD-IKKEAALAIAN  346 (458)
Q Consensus       283 ~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~-~~~~a~~~L~~  346 (458)
                      ..+..  .+ +..+...++.++..-|. +...+..+. ...++.|-+.++ +++.. +|..|+-+|+.
T Consensus        92 ~~~~~~~~~-~~~~~~~~lell~aAc~-d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   92 LPLASRKSK-DRKVQKAALELLSAACI-DKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHHH-CTS--HHHHHHHHHHHHHHTT-SHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhcccC-CHHHHHHHHHHHHHHHc-cHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            99998  55 77888888888887764 334444444 458899999995 44555 78888887765

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.89  E-value=2.2  Score=43.49  Aligned_cols=241  Identities=15%  Similarity=0.149  Sum_probs=147.3

Q ss_pred             hhhHHHHHHhhcC-----CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC----CCC----ccchhhHHHH
Q 043950          192 RPALPALAQLIHL-----DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG----HPS----PSVLTPALWT  258 (458)
Q Consensus       192 ~~~l~~l~~ll~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~~~~~a~~~  258 (458)
                      .+++..++.++.+     .+......++..|..++... .+.+.+++.|.++.|+..+.    .+.    ..+.+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            3556666666653     34566677777887777554 45566888999998887774    333    4566666666


Q ss_pred             HhHhhcCChhh-HH---HHHh--------cCChHHHHHHhccCC---hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChH
Q 043950          259 VGNIVMGDDFQ-TQ---CIIN--------HGAVPCLLALLIHNH---KKSIKKVACWTISNITAGNREQIQAVIDAGLIV  323 (458)
Q Consensus       259 l~~l~~~~~~~-~~---~~~~--------~~~~~~l~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~  323 (458)
                      +..+....... ..   ....        ..-+..+++.+.++.   ++.+....+.+|.+++.++++.++.+++.  +.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence            66665322211 10   0001        112566666665541   57888999999999999999988888772  33


Q ss_pred             HHHHHhcc--CChhhHHHHHHHHHHhhcCC-----CHHHHHHHHHCCChHHHHhhccCC--------CHH--------HH
Q 043950          324 PLVNVLQD--AEFDIKKEAALAIANATVRG-----THEQIKYLVREGCIKPLCDLLLCV--------DPK--------IV  380 (458)
Q Consensus       324 ~L~~ll~~--~~~~~~~~a~~~L~~l~~~~-----~~~~~~~l~~~~~l~~L~~ll~~~--------~~~--------v~  380 (458)
                      +.+++=.-  ....--...+.+++.++.+-     .......+++.|+++..++++...        .++        -.
T Consensus       273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            33332111  11111123466777776542     235677788999999888877531        111        22


Q ss_pred             HHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh-hcCCChHHHHHHHHHHHHhcCCC
Q 043950          381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL-KSHDNNGIREKAVKILETYWCGR  449 (458)
Q Consensus       381 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~  449 (458)
                      ..++..|.-++...+..              +.....+++..+-.| +.+....|-..|..+|+.+-+.+
T Consensus       353 p~iL~lL~GLa~gh~~t--------------Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  353 PYILRLLRGLARGHEPT--------------QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             HHHHHHHHHHHhcCHHH--------------HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            45666666666644432              222355677777777 45557788889999998877654

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.86  E-value=0.14  Score=40.95  Aligned_cols=147  Identities=11%  Similarity=0.079  Sum_probs=87.3

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      ..++.|+++++.+....+|.+++++||.+..-+|...+.+...  .+.-.  -............. ....   .+. .+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~-~~~~---~~~-~e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLP-MMGI---SPS-SE   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHh-hccC---CCc-hH
Confidence            3577888899888768999999999999988655544422211  11000  01111111111111 1111   111 12


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS  221 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  221 (458)
                      ...-..++..|+..+.+..-..-...+..++.++..............++|.++..+++.+...++..+.-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2233346778888885444444455667777777755445556777999999999999777788887777666654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.85  E-value=0.64  Score=43.80  Aligned_cols=260  Identities=12%  Similarity=0.095  Sum_probs=141.3

Q ss_pred             HHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-C
Q 043950           43 ATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-P  121 (458)
Q Consensus        43 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~  121 (458)
                      .-..|..+.........+..++..++..|+.++.+++ +.-|.....+|.++.+.....|..+.. .+...+.+++.. .
T Consensus       110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~  187 (409)
T PF01603_consen  110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE  187 (409)
T ss_dssp             HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence            3445555544322222333455567888999999998 899999998998887655555655543 345666666654 3


Q ss_pred             CHHHHHHHHHHHHHhhcCCC-chhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH
Q 043950          122 SDDVREQAVWALGNVAADSP-GCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQ  200 (458)
Q Consensus       122 ~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~  200 (458)
                      ........+.+++.+..+-. ..++.... -....++.+.....-.........++..++..++.    ....++..++.
T Consensus       188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk  262 (409)
T PF01603_consen  188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLK  262 (409)
T ss_dssp             --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHH
Confidence            44455667778888775422 11111100 01122222332222233445556666666554322    22333344444


Q ss_pred             hhcCCChHHHHHHHHHHHHhccCCh-hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhc---
Q 043950          201 LIHLDDEEVLSDACWTLSYLSYGTN-DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH---  276 (458)
Q Consensus       201 ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~---  276 (458)
                      .=-..++.-...-+.-+..+...-+ .... -+...++..+.+++.+++..|.+.|+..+.|      +....++..   
T Consensus       263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~-~i~~~lf~~la~ci~S~h~qVAErAl~~w~n------~~~~~li~~~~~  335 (409)
T PF01603_consen  263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQ-KIMVPLFKRLAKCISSPHFQVAERALYFWNN------EYFLSLISQNSR  335 (409)
T ss_dssp             HS-SS-HHHHHHHHHHHHHHHTT--HHHHH-HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS------HHHHHHHHCTHH
T ss_pred             hCCCCCchhHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC------HHHHHHHHhChH
Confidence            3334555555555555666654332 2223 2333578888999999998888888876532      222222222   


Q ss_pred             CChHHHHHHhccCC----hhhHHHHHHHHHHHhhcCCHHHHHHH
Q 043950          277 GAVPCLLALLIHNH----KKSIKKVACWTISNITAGNREQIQAV  316 (458)
Q Consensus       277 ~~~~~l~~ll~~~~----~~~v~~~a~~~l~nl~~~~~~~~~~l  316 (458)
                      .++|.+...+....    +..|+..|..++.-+...+++....+
T Consensus       336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~  379 (409)
T PF01603_consen  336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKC  379 (409)
T ss_dssp             HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            36777777765421    45789999999888887766654443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.74  E-value=1.2  Score=39.00  Aligned_cols=203  Identities=11%  Similarity=0.066  Sum_probs=138.7

Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhh---h---hhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ---V---RPALPALAQLIHLDDEEVLSDACWTLSY  219 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~---~~~l~~l~~ll~~~~~~~~~~~~~~l~~  219 (458)
                      .+.+.|.+..++..+ ...+-+.+..+..+..++-+..-......   .   ...+..++.--.. .+++...+-..+..
T Consensus        74 ef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   74 EFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE  151 (342)
T ss_pred             HHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence            356778888999998 66677788888888888877653222211   1   2233333333111 24444444444444


Q ss_pred             hccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCC----hHHHHHHhccCChhhHH
Q 043950          220 LSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGA----VPCLLALLIHNHKKSIK  295 (458)
Q Consensus       220 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~l~~ll~~~~~~~v~  295 (458)
                      ... .+...+.+..+.-+......++.+.-++...|..+...+...+...+..++..+.    .+..-.++.++ +.-.+
T Consensus       152 cir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvtk  229 (342)
T KOG1566|consen  152 CIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVTK  229 (342)
T ss_pred             HHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceehH
Confidence            443 3335566777778888888898888889999999998888777666666664432    34466777887 89999


Q ss_pred             HHHHHHHHHhhc--CCHHHHHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950          296 KVACWTISNITA--GNREQIQA-VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT  352 (458)
Q Consensus       296 ~~a~~~l~nl~~--~~~~~~~~-l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  352 (458)
                      +.+...++.+..  ++...+.. +-+..-+..++.+|.+....+|-+|-....-.+.+.+
T Consensus       230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn  289 (342)
T KOG1566|consen  230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN  289 (342)
T ss_pred             HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence            999999999875  34343333 3334578889999999999999999999888877543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.68  E-value=1.2  Score=43.59  Aligned_cols=194  Identities=11%  Similarity=0.075  Sum_probs=135.6

Q ss_pred             hhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh
Q 043950          190 QVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ  269 (458)
Q Consensus       190 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~  269 (458)
                      ....++|.+.+++...|..+|...+.-+-.....-   .+..++..+++.+..-+.+.++.+|+.++.++..++..-...
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            55789999999999999999988887776665432   233667789999999999999999999999998887532221


Q ss_pred             HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                         .++...++.+..+-.+. +..+|-...-+++-++.+.....   .+.-....+.+.+.++-...|..+.+++.....
T Consensus       404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence               23333455555544433 67788888888887765421111   122233445556777777788888888877765


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhh
Q 043950          350 RGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAE  397 (458)
Q Consensus       350 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~  397 (458)
                      .-+...    ....+++.+..+.-+++..++..+..++..+....++.
T Consensus       477 ~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  477 YFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             ccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            432211    23457888888888899999999999999888776654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.64  E-value=0.72  Score=44.96  Aligned_cols=188  Identities=12%  Similarity=0.152  Sum_probs=132.0

Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC
Q 043950          106 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ  185 (458)
Q Consensus       106 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  185 (458)
                      +..+++|.|++++...+..+|-.-+.-+-.+...   ....+.+..+++.+...+ .+.++.+++..+.++..++..-..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence            5567899999999999999987666555555433   233455666788888777 788999999999998888765322


Q ss_pred             CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCc-HHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950          186 PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGV-CRRLVELLGHPSPSVLTPALWTVGNIVM  264 (458)
Q Consensus       186 ~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-i~~L~~ll~~~~~~~~~~a~~~l~~l~~  264 (458)
                      .  ......+..+..+-.+++..++....-|++.++.......    ..++ ...+.+-++++-..-|..+.+.+.....
T Consensus       403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence            1  2335556666666667778999999999998886533221    2333 3445556777777788888888876655


Q ss_pred             CChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       265 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      ..+.   .-+...+++.+..+..++ +..+|..|..++..+-.
T Consensus       477 ~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  477 YFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             ccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence            4432   223457889999888888 88899988888877654

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.64  E-value=2.3  Score=41.04  Aligned_cols=252  Identities=12%  Similarity=0.068  Sum_probs=133.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH
Q 043950           36 DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFV  115 (458)
Q Consensus        36 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  115 (458)
                      ..+.|..+...|..+..... .... .    .-..+.+.+.....++.-..-+.+|..++.+..+.  ..++.++.+.|.
T Consensus        42 p~e~R~~~~~ll~~~i~~~~-~~~~-~----~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~  113 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQD-SSSG-L----MRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLL  113 (464)
T ss_pred             CHHHHHHHHHHHHHHHHccc-cccH-H----HHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHH
Confidence            46688888888888877642 2111 1    11233333343322333333444445555533333  224567777777


Q ss_pred             HhhCCC---------------------------CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHH
Q 043950          116 KLLASP---------------------------SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSM  168 (458)
Q Consensus       116 ~ll~~~---------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~  168 (458)
                      ..+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.......++..
T Consensus       114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d  193 (464)
T PF11864_consen  114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD  193 (464)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence            776321                           11222334444555554332211111112345555555544445555


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-
Q 043950          169 LRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-  247 (458)
Q Consensus       169 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-  247 (458)
                      .+.++.++-.+.... ..+......++..|.......  +....+..++.|++.....       ...+..|..+|.++ 
T Consensus       194 i~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~  263 (464)
T PF11864_consen  194 IEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPD  263 (464)
T ss_pred             HHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccC
Confidence            566666666665543 233344455555555553333  5666677788888744321       12457778888432 


Q ss_pred             -----CccchhhHHHHHhHhhcCChhhHHHHH-hc--CChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950          248 -----SPSVLTPALWTVGNIVMGDDFQTQCII-NH--GAVPCLLALLIHNHKKSIKKVACWTISNIT  306 (458)
Q Consensus       248 -----~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~--~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~  306 (458)
                           +..+.+.|+.++..+..+..+....-+ -.  -+++.+...++.+ ++.+-.+....+.++.
T Consensus       264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence                 334566788888888766532222222 12  2788888888887 7777777777777776

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.55  E-value=1.8  Score=39.46  Aligned_cols=157  Identities=17%  Similarity=0.154  Sum_probs=112.1

Q ss_pred             HHHHHHHhCCCCccchhhHHHHHhHhhc-CChhhHHHHHhc-C-ChHHHHHHhccCC----h--------hhHHHHHHHH
Q 043950          237 CRRLVELLGHPSPSVLTPALWTVGNIVM-GDDFQTQCIINH-G-AVPCLLALLIHNH----K--------KSIKKVACWT  301 (458)
Q Consensus       237 i~~L~~ll~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~-~-~~~~l~~ll~~~~----~--------~~v~~~a~~~  301 (458)
                      ++.+.+.|......+...+++.|..++. .+......++.. + -.+.+-+++....    +        +.+|......
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6788888998888888899999999998 555666666633 1 2334555553220    1        2788887766


Q ss_pred             HHHhhc-CCHHHHHHHH-HcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC---HHHHHHHHHCCChHHHHhhccCCC
Q 043950          302 ISNITA-GNREQIQAVI-DAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT---HEQIKYLVREGCIKPLCDLLLCVD  376 (458)
Q Consensus       302 l~nl~~-~~~~~~~~l~-~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~l~~~~~l~~L~~ll~~~~  376 (458)
                      +..+.. +++.....++ +.+.+..+.+-+..+++++....+.++..-+....   +...-.+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            666655 6666666666 46678889999999899999999999986444322   233344556677888999888777


Q ss_pred             H----HHHHHHHHHHHHHHHh
Q 043950          377 P----KIVTVCLEGLENILKV  393 (458)
Q Consensus       377 ~----~v~~~~~~~l~~l~~~  393 (458)
                      +    .+...+...|..++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcC
Confidence            7    8888899998888853

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.54  E-value=2.5  Score=40.79  Aligned_cols=290  Identities=14%  Similarity=0.080  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 043950           37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK  116 (458)
Q Consensus        37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  116 (458)
                      -..|..|+..|+..+..-+-.....+     ...--.++..+...+.|..+...|..+......... ...    ..+.+
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHH
Confidence            34566777777776554323223222     223335565655468999999999988875332111 111    11222


Q ss_pred             hhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc--------------------------ccHHHH
Q 043950          117 LLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH--------------------------AKLSML  169 (458)
Q Consensus       117 ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~--------------------------~~~~~~  169 (458)
                      .+. ...++-...-+.+|..|+.+..+...  .+.+..+.+...+...                          .+....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            222 23343344556667777655544311  3445555555555211                          022233


Q ss_pred             HHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC
Q 043950          170 RIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP  247 (458)
Q Consensus       170 ~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  247 (458)
                      ...+..+.++...+ .......+.+++..+..+.. +.+......++..+-.+.....--...+  ..++..|...... 
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl--~~~i~vLCsi~~~-  228 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL--SPCIEVLCSIVNS-  228 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH--HHHHHHHhhHhcc-
Confidence            44445555555544 22333444555555555532 3334444555555544442211111100  1234444444332 


Q ss_pred             CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-----ChhhHHHHHHHHHHHhhcCCHHHHHHHH-Hc--
Q 043950          248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-----HKKSIKKVACWTISNITAGNREQIQAVI-DA--  319 (458)
Q Consensus       248 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~--  319 (458)
                       .+....+..++.||+..+-..       ..+..|..+|.++     .+..+.+.|...+..+..+..+....-+ -.  
T Consensus       229 -~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~  300 (464)
T PF11864_consen  229 -VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPS  300 (464)
T ss_pred             -cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHH
Confidence             367778888999998644322       2356677777322     1446667888888888764422221111 12  


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          320 GLIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                      -+++.+...++..+..+-.+.+..+.++..
T Consensus       301 ~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  301 SVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            278888888888887777788888888773

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.50  E-value=0.31  Score=49.34  Aligned_cols=192  Identities=14%  Similarity=0.076  Sum_probs=132.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh-CCCCccchhhHHHHHhHhhcCChhhHHHH
Q 043950          195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL-GHPSPSVLTPALWTVGNIVMGDDFQTQCI  273 (458)
Q Consensus       195 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~  273 (458)
                      -+.+-.-+.+.++.-+..++..+............ -...+.+..+++.. .+.+-.+...++.+|.-++..........
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            33445555688899999999888888755441111 11223444444443 44577788889999988887655443333


Q ss_pred             HhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCH
Q 043950          274 INHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH  353 (458)
Q Consensus       274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  353 (458)
                       ..++++.+++.+... ...++..+..++-.++..++.       ....+.+...+.+.++.++..+...+.......++
T Consensus       334 -~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  334 -AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             -HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence             347889999999888 777887776666666543221       13677888899999999999998888888765442


Q ss_pred             HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950          354 EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       354 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      .....-.-.++++.++....+.+.+|+..++.++..+.+....
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge  447 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE  447 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence            2222223346788888888899999999999999988876443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.47  E-value=0.086  Score=45.75  Aligned_cols=145  Identities=12%  Similarity=0.179  Sum_probs=100.6

Q ss_pred             cHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHH
Q 043950          236 VCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA  315 (458)
Q Consensus       236 ~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~  315 (458)
                      .+...+..|.+.++.....++..+..|+.++++.....+. .++-.+++-+++. ...|-+.|+.+++.+.......+..
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~  166 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ  166 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677788899999999999999999988876665553 4667777888888 8899999999999998743344443


Q ss_pred             HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950          316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL  391 (458)
Q Consensus       316 l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~  391 (458)
                      ..+ +.+..|..--...+.=++..|-.+|..++..-.+..        ++..|...+.+.++.++..+..+..+..
T Consensus       167 ~ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  167 ELD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HHH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence            222 122222211122244478889999999987654332        3677888888888888877766555443

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.46  E-value=1.6  Score=38.25  Aligned_cols=209  Identities=13%  Similarity=0.102  Sum_probs=140.3

Q ss_pred             HHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh----hhHHHHH-hcCChHHHHHHhccCCh-hhHHHHHHHH
Q 043950          228 IQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD----FQTQCII-NHGAVPCLLALLIHNHK-KSIKKVACWT  301 (458)
Q Consensus       228 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~-~~~~~~~l~~ll~~~~~-~~v~~~a~~~  301 (458)
                      .+.+.++|.+..++..+..-+.+-+..++.+..++-...-    .....+. +..++..++.-   -.+ +++.-.+...
T Consensus        72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~m  148 (342)
T KOG1566|consen   72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNM  148 (342)
T ss_pred             HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHH
Confidence            3457788999999999999888889999999988865332    1222222 22333333333   211 3333333334


Q ss_pred             HHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHC--C-ChHHHHhhccCCCHH
Q 043950          302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVRE--G-CIKPLCDLLLCVDPK  378 (458)
Q Consensus       302 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~--~-~l~~L~~ll~~~~~~  378 (458)
                      +..+.++ +.....+..+.-+......++.+..++...|...+..+.........+++..+  . ..+....++.+.+.-
T Consensus       149 lrEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv  227 (342)
T KOG1566|consen  149 LRECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYV  227 (342)
T ss_pred             HHHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence            4444433 34455566777888899999999999999999999999876533334443332  1 134466678888888


Q ss_pred             HHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCC
Q 043950          379 IVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRV  450 (458)
Q Consensus       379 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  450 (458)
                      .+..++++++.++-.-.+...          ....+.....++.+.+++.+++..+|-.|-.+-..|.....
T Consensus       228 tkrqs~kllg~llldr~N~~~----------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn  289 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSAV----------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN  289 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHHH----------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence            889999999999876554432          25556666778999999999999999888877765554443

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.43  E-value=0.48  Score=38.57  Aligned_cols=141  Identities=19%  Similarity=0.149  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHcCC-Chh----hHHHHHhC-------CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhh
Q 043950           83 LQYEAAWALTNIASG-TSM----NTNVVIDH-------GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLRE  150 (458)
Q Consensus        83 i~~~a~~~L~~l~~~-~~~----~~~~~~~~-------~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  150 (458)
                      +|..|+.+|..++.. ++.    +-..++..       .-.+.+.-++.++++.+|..|+.++..+-.+...+-....+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            567788888777774 111    11112211       233455557778999999999999999886543221111100


Q ss_pred             -------------------CCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC--ChhhhhhhHHHHHHhhcCCChHH
Q 043950          151 -------------------EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP--PFDQVRPALPALAQLIHLDDEEV  209 (458)
Q Consensus       151 -------------------~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~~  209 (458)
                                         ..-..|+..+....+..+....+.++..+....|..  .......++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence                               123345555556667788899999999999887433  34455777777888889999999


Q ss_pred             HHHHHHHHHHhccC
Q 043950          210 LSDACWTLSYLSYG  223 (458)
Q Consensus       210 ~~~~~~~l~~l~~~  223 (458)
                      +..++.+++.+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999888744

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.38  E-value=0.11  Score=34.86  Aligned_cols=67  Identities=19%  Similarity=0.313  Sum_probs=52.1

Q ss_pred             hhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 043950          252 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAG  320 (458)
Q Consensus       252 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~  320 (458)
                      .+.|+|+++++++ .+.-...+.+.++++.++++..+.+...+|-.|.++|+-++.. .+..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            4679999999987 4455566667899999999999876889999999999999864 45555554444

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.37  E-value=0.56  Score=47.58  Aligned_cols=193  Identities=14%  Similarity=0.088  Sum_probs=132.8

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhh
Q 043950          115 VKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA  194 (458)
Q Consensus       115 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  194 (458)
                      ..-+.+.+..-|..++..+.-...... ........|.+..++.....+.+..+...++.+|..++..-..........+
T Consensus       259 ~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v  337 (815)
T KOG1820|consen  259 ETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNV  337 (815)
T ss_pred             HHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence            333445666777778888877765544 1111112344555666665677778888888899988877655556666888


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHH
Q 043950          195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCI  273 (458)
Q Consensus       195 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~  273 (458)
                      .|.+...+......++..+..++-.++....       -....+.+...+++.++.++..+...+.......+ .....-
T Consensus       338 ~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~  410 (815)
T KOG1820|consen  338 FPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE  410 (815)
T ss_pred             cchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence            8999999998888888888777776664221       12356888899999999999998888877766444 222212


Q ss_pred             HhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHH
Q 043950          274 INHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAV  316 (458)
Q Consensus       274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l  316 (458)
                      .-.++++.++....+. +..||..|..+++-+.. +..+.+..+
T Consensus       411 t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~  453 (815)
T KOG1820|consen  411 TVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL  453 (815)
T ss_pred             hHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            2246788888888888 89999999999988876 333444333

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=95.34  E-value=0.12  Score=39.93  Aligned_cols=75  Identities=12%  Similarity=-0.030  Sum_probs=64.5

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ++..+..-+.++++.++..|+..|-.++.++...+...+.+.+++..|+.++..      .++.|+.+++.++.......
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            566788888899999999999999999999998888888999999999999953      56789999999988877654


Q ss_pred             h
Q 043950          395 E  395 (458)
Q Consensus       395 ~  395 (458)
                      .
T Consensus       119 ~  119 (139)
T cd03567         119 P  119 (139)
T ss_pred             c
Confidence            3

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.34  E-value=0.6  Score=45.44  Aligned_cols=236  Identities=12%  Similarity=0.040  Sum_probs=137.0

Q ss_pred             hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC---CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-
Q 043950          148 LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK---PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG-  223 (458)
Q Consensus       148 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~-  223 (458)
                      ++.|.++.++.....-+...+....-.+++.+....   .........-.-|.+.+-|+..+..++..|+..+.+.-.- 
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            456777777776654444334344444455554432   1111111223335566778889999999999999887632 


Q ss_pred             -Ch---hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHH
Q 043950          224 -TN---DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVAC  299 (458)
Q Consensus       224 -~~---~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~  299 (458)
                       ++   +....+++. -+..+.++|.++-+.+|..|..-++...+..-+.+-..+-..++..+..-+..+...+||-...
T Consensus       206 dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf  284 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVF  284 (1005)
T ss_pred             CCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHh
Confidence             11   122333333 4688999999999999999988877776432222111111123344444444443567888888


Q ss_pred             HHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHH
Q 043950          300 WTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI  379 (458)
Q Consensus       300 ~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  379 (458)
                      ..|..+....  ....+.+. ++|.+-..+.+....||..+...|..+-..   . ...+..---.+.++.-|..++.++
T Consensus       285 ~gl~~~l~np--~sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~v---r-a~~f~~I~~~d~~l~~L~~d~~~v  357 (1005)
T KOG1949|consen  285 KGLPMILDNP--LSHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAV---R-AAKFWKICPMDHILVRLETDSRPV  357 (1005)
T ss_pred             cCcHHHHcCc--cchhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhh---h-hhhhhccccHHHHHHHHhccccHH
Confidence            8887776421  12223332 566666777888899999988888877432   1 112222233556666667777666


Q ss_pred             HHHHHHHHHHHH
Q 043950          380 VTVCLEGLENIL  391 (458)
Q Consensus       380 ~~~~~~~l~~l~  391 (458)
                      .+..+..|-+.+
T Consensus       358 ~rr~~~li~~s~  369 (1005)
T KOG1949|consen  358 SRRLVSLIFNSF  369 (1005)
T ss_pred             HHHHHHHHHHhh
Confidence            666555555443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.32  E-value=2.1  Score=39.57  Aligned_cols=276  Identities=17%  Similarity=0.144  Sum_probs=137.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH-HhhcCCCchhh
Q 043950           68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALG-NVAADSPGCRN  145 (458)
Q Consensus        68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~-~l~~~~~~~~~  145 (458)
                      +..++.-+.+.+...+|..++--|+.-+. +++++..+...|....+++.+.. ++..+...++.++. -++.+.. ...
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            55566666644446889888888888888 69999999999999999999854 33324444444444 4444432 233


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---------CCChHHHHHHHHH
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH---------LDDEEVLSDACWT  216 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~---------~~~~~~~~~~~~~  216 (458)
                      .+.+.+...-++.++.-...........      ... ...-.......+..+...+.         .....-+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hhh-hhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            3334444544466663000000000000      000 00000001111111112110         1112223333333


Q ss_pred             HHHhc--------------cCChhhHHHHHHhCcHHHHHHHhCC----C-------Cc-----cchhhHHHHHhHhhcCC
Q 043950          217 LSYLS--------------YGTNDKIQVVIEAGVCRRLVELLGH----P-------SP-----SVLTPALWTVGNIVMGD  266 (458)
Q Consensus       217 l~~l~--------------~~~~~~~~~~~~~~~i~~L~~ll~~----~-------~~-----~~~~~a~~~l~~l~~~~  266 (458)
                      +-.++              ...+...+.+...|++..++..+..    .       .+     .....++.+|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            33331              1111223445566788888888751    1       11     13344677787777666


Q ss_pred             hhhHHHHHh--cCChHHHHH-HhccCC--hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh-------c----
Q 043950          267 DFQTQCIIN--HGAVPCLLA-LLIHNH--KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL-------Q----  330 (458)
Q Consensus       267 ~~~~~~~~~--~~~~~~l~~-ll~~~~--~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll-------~----  330 (458)
                      .+....+..  .+.++.... ++....  ..+....++..+.|+.-++++....+...++...+.-+.       .    
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            655555553  233333332 232220  233456788889999887766666665443322221111       1    


Q ss_pred             ---cCChhhHHHHHHHHHHhhcCCC
Q 043950          331 ---DAEFDIKKEAALAIANATVRGT  352 (458)
Q Consensus       331 ---~~~~~~~~~a~~~L~~l~~~~~  352 (458)
                         ....+...-++.++.|++++++
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             ccccccchHHHHHHHhHHHheeeCc
Confidence               1134566677778888877543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=0.46  Score=44.99  Aligned_cols=156  Identities=16%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950           27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEF-LMREDYPQLQYEAAWALTNIASGTSMNTNVV  105 (458)
Q Consensus        27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  105 (458)
                      .+-+++.+.|+.+|...+..+.-.-.+.+        ..|++..|++. .++.+ .++|..|+-+|+-++.+++      
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDR------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCc-hHHHHHHHHheeeeEecCc------
Confidence            34456667788888877766665545431        23678888887 67777 7999999999998888544      


Q ss_pred             HhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC
Q 043950          106 IDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP  184 (458)
Q Consensus       106 ~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~  184 (458)
                         ..++..+++|. +.++.+|...+.+|+-.|.+....  .     ++ .++..|..++..-+++.|+-++.-+.....
T Consensus       585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--~-----a~-diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n  653 (926)
T COG5116         585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--V-----AT-DILEALMYDTNDFVRQSAMIAVGMILMQCN  653 (926)
T ss_pred             ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--H-----HH-HHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence               33555666654 578999999999999888665331  1     12 233334367777788888888887776554


Q ss_pred             CCChhhhhhhHHHHHHhhcCCChH
Q 043950          185 QPPFDQVRPALPALAQLIHLDDEE  208 (458)
Q Consensus       185 ~~~~~~~~~~l~~l~~ll~~~~~~  208 (458)
                      ..-.....++...+.+++....++
T Consensus       654 ~~Lnp~v~~I~k~f~~vI~~Khe~  677 (926)
T COG5116         654 PELNPNVKRIIKKFNRVIVDKHES  677 (926)
T ss_pred             cccChhHHHHHHHHHHHHhhhhHh
Confidence            333344566666666666654433

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=3.4  Score=40.89  Aligned_cols=279  Identities=12%  Similarity=0.088  Sum_probs=155.5

Q ss_pred             CCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhc--CCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950          108 HGAVPIFVKLLAS--------PSDDVREQAVWALGNVAA--DSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS  177 (458)
Q Consensus       108 ~~~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~  177 (458)
                      .|+++.+...+..        .++.-.+.|++.++++..  +.+....-+.+.-.++.++..+ +++.--++..+|.+++
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence            3888999998832        345566778888888865  2222222233333445555555 6666778899999999


Q ss_pred             HhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHh---CcHHHHHHHhCCCCccchhh
Q 043950          178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEA---GVCRRLVELLGHPSPSVLTP  254 (458)
Q Consensus       178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~~~~~  254 (458)
                      .+..+  -........+.+.....+++++-.++..+.-++..+..+..  .......   +.++.|+.+-+.-+-+....
T Consensus       486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sahVp~tmekLLsLSn~feiD~LS~  561 (970)
T COG5656         486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAHVPETMEKLLSLSNTFEIDPLSM  561 (970)
T ss_pred             HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence            99544  34444556777777888888888999888888887775442  2222222   34444544444433333333


Q ss_pred             HHHHH-hHhhcC----ChhhHHHHHhcCChHHHHHHhccCCh-----hhHHHHHHHHHHHhhc------CCHHHHHHHHH
Q 043950          255 ALWTV-GNIVMG----DDFQTQCIINHGAVPCLLALLIHNHK-----KSIKKVACWTISNITA------GNREQIQAVID  318 (458)
Q Consensus       255 a~~~l-~~l~~~----~~~~~~~~~~~~~~~~l~~ll~~~~~-----~~v~~~a~~~l~nl~~------~~~~~~~~l~~  318 (458)
                      ++..+ +..+..    .++....+. ..+++....++..+++     .+-+..|...|..+..      ..+...+++. 
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv-~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le-  639 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLV-RQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLE-  639 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHH-HHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-
Confidence            33222 222211    111111111 1234444445544311     1223344444444432      2333333333 


Q ss_pred             cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCH-HHHHHHHHHHHHHHHhchh
Q 043950          319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDP-KIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       319 ~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~~~~~l~~l~~~~~~  396 (458)
                      ....|..-=.+.++-.++-.+|+..+-+.+.. .++.. . .--|+.+.+.+++.++.. .-...+..++.+++.++..
T Consensus       640 ~slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~-p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~  715 (970)
T COG5656         640 VSLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIE-P-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT  715 (970)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhh-h-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence            33555544456666777888888888776542 11211 1 122567778888877764 4556677899999988754

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.27  E-value=0.079  Score=51.05  Aligned_cols=134  Identities=14%  Similarity=0.122  Sum_probs=100.8

Q ss_pred             CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHH
Q 043950          247 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLV  326 (458)
Q Consensus       247 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~  326 (458)
                      .++.++..|..+|..+.+-+.+.+.     .-+|.++..+...++|.+|.+|...++.++.......+.     .-..|.
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy  977 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY  977 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence            5678888888888888765544433     348889999985559999999999999988643333332     344688


Q ss_pred             HHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950          327 NVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       327 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      +-|.+++..|++.++..+.++...+-      +.-+|.+..+..++.++|.++..-|--.+..+...+..
T Consensus       978 rrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098         978 RRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred             HHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence            88889999999999999999987542      33467788889999999888877776666666665444

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.27  E-value=0.44  Score=44.86  Aligned_cols=237  Identities=13%  Similarity=0.070  Sum_probs=133.9

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      ..-+..|+.++.|+|+.-|......|.++...-  ...+..+...+...|.+.+.......-....+.+++.+..+..-.
T Consensus       132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~--~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~p  209 (409)
T PF01603_consen  132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKF--PNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVP  209 (409)
T ss_dssp             HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCC
Confidence            345788999999999999999988999886642  334444445567778888876554566778888999988853311


Q ss_pred             HHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          102 TNVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      .......-....++.+.+.+. ......-..++..+...++.....     .+..+++.- ...++.-...-+.-+..+.
T Consensus       210 lk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il  283 (409)
T PF01603_consen  210 LKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEIL  283 (409)
T ss_dssp             --HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHH
Confidence            111111111244455554432 233444555566555555443222     234444444 3333332333344445554


Q ss_pred             cCCCCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHH--hCcHHHHHHHhCCC-----Cccch
Q 043950          181 KGKPQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIE--AGVCRRLVELLGHP-----SPSVL  252 (458)
Q Consensus       181 ~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~-----~~~~~  252 (458)
                      ...+... ......+...+...+.+.+-.+.+.|+....|     +.....+.+  ..+++.+..-+...     +..++
T Consensus       284 ~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr  358 (409)
T PF01603_consen  284 EVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVR  358 (409)
T ss_dssp             TT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            4332222 22335667778888889999999888876533     212221111  13566666666441     56789


Q ss_pred             hhHHHHHhHhhcCChhhHH
Q 043950          253 TPALWTVGNIVMGDDFQTQ  271 (458)
Q Consensus       253 ~~a~~~l~~l~~~~~~~~~  271 (458)
                      ..|..++..+...++....
T Consensus       359 ~~a~~vl~~l~~~d~~lf~  377 (409)
T PF01603_consen  359 NLAQNVLKILMEMDPKLFD  377 (409)
T ss_dssp             HHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHHhCHHHHH
Confidence            9999999888877765543

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.24  E-value=0.62  Score=43.05  Aligned_cols=139  Identities=17%  Similarity=0.172  Sum_probs=81.3

Q ss_pred             HHHHHhhcCCC-hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC------CCCccchhhHHHHHhHhhcCChh
Q 043950          196 PALAQLIHLDD-EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG------HPSPSVLTPALWTVGNIVMGDDF  268 (458)
Q Consensus       196 ~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~~a~~~l~~l~~~~~~  268 (458)
                      +.+..-+...| ..-+..|+..+..++.........++    ...+..++.      ..++.-+..|+..++.++.....
T Consensus       213 EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t  288 (370)
T PF08506_consen  213 EYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST  288 (370)
T ss_dssp             HHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred             HHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence            33444444333 44566777888888754333222222    122223332      24567778899999999865422


Q ss_pred             ------------hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhh
Q 043950          269 ------------QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDI  336 (458)
Q Consensus       269 ------------~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~  336 (458)
                                  ....++...++|.|. - ..+..+-+|..|++.+..+-..-+.  +.+.  +++|.++..|.+++.-|
T Consensus       289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~~vv  362 (370)
T PF08506_consen  289 TKSGVTQTNELVDVVDFFSQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSSYVV  362 (370)
T ss_dssp             BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-HHH
T ss_pred             ccCCcccccccccHHHHHHHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCCcch
Confidence                        234444555666665 1 2222678899999999999874332  2222  38999999999999999


Q ss_pred             HHHHHHHH
Q 043950          337 KKEAALAI  344 (458)
Q Consensus       337 ~~~a~~~L  344 (458)
                      ...|+.++
T Consensus       363 ~tyAA~~i  370 (370)
T PF08506_consen  363 HTYAAIAI  370 (370)
T ss_dssp             HHHHHHHH
T ss_pred             hhhhhhhC
Confidence            99998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.24  E-value=3.7  Score=40.97  Aligned_cols=304  Identities=12%  Similarity=0.099  Sum_probs=165.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh--CCChHHH
Q 043950           37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVID--HGAVPIF  114 (458)
Q Consensus        37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L  114 (458)
                      --+++..++.+.+..+..-....+.    -.-..+++++++.++.-++..+++++.-...+-.-..+.+..  .+....+
T Consensus       501 RiiRRRVa~ilg~Wvsvq~~~e~k~----l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l  576 (978)
T KOG1993|consen  501 RIIRRRVAWILGQWVSVQQKLELKP----LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL  576 (978)
T ss_pred             hHHHHHHHHHHhhhhheechHhHHH----HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence            4466677778777765321111111    134567888888865778889999998887743333333321  2444555


Q ss_pred             HHhhCC-CCHHHHHHHHHHHHHhhcCCCc-hhhHHhhhCCHHHHHHHhc-cc-ccHHHHHHHHHHHHHhhcCCCCCChhh
Q 043950          115 VKLLAS-PSDDVREQAVWALGNVAADSPG-CRNLVLREEALIPLLAQLN-EH-AKLSMLRIATWTLSKLCKGKPQPPFDQ  190 (458)
Q Consensus       115 ~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~l~~~l~-~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~  190 (458)
                      .++++. +.-+.+..++.+++.+...-.+ .+...   +.+-.++..+- .+ +.+-++...+.++.++...-.......
T Consensus       577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~---~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~  653 (978)
T KOG1993|consen  577 FKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA---STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEF  653 (978)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccc
Confidence            666654 4556777788888877643222 11111   12223333332 22 334455666788889887654444444


Q ss_pred             hhhhHHHHHHhhcCCC---hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh
Q 043950          191 VRPALPALAQLIHLDD---EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD  267 (458)
Q Consensus       191 ~~~~l~~l~~ll~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~  267 (458)
                      ...++|.+-.-...+.   ....+.++..=.....+.+.....+.  +++|.+...+....+. ...++.++....--..
T Consensus       654 ~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~  730 (978)
T KOG1993|consen  654 YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLDN  730 (978)
T ss_pred             hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhcc
Confidence            4555555444443222   23344443332222223332222232  4677777777654433 3334444433222122


Q ss_pred             hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc--cCChhhHHHHHHHHH
Q 043950          268 FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ--DAEFDIKKEAALAIA  345 (458)
Q Consensus       268 ~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~--~~~~~~~~~a~~~L~  345 (458)
                      .....-...|+.+.+.+++.+- ..+-....+.++..+...++ -.......++++.+...+-  .+.+.+...-+..++
T Consensus       731 ~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vva  808 (978)
T KOG1993|consen  731 TVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVA  808 (978)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHH
Confidence            2222223347788888888655 44455556666666665553 5566667788888877653  335667777777777


Q ss_pred             HhhcCCC
Q 043950          346 NATVRGT  352 (458)
Q Consensus       346 ~l~~~~~  352 (458)
                      .+.....
T Consensus       809 Ri~l~n~  815 (978)
T KOG1993|consen  809 RISLRNP  815 (978)
T ss_pred             HHHhcCh
Confidence            7776543

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=95.02  E-value=0.17  Score=39.52  Aligned_cols=75  Identities=9%  Similarity=0.052  Sum_probs=65.5

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhch
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      ++..+..-+.+.++.++..|+..|-.++.++...+...+.+.+++..|..++.. .++.|+..++..+........
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~  113 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK  113 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence            566777788889999999999999999999999998899999999999999987 788999999999888765433

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.92  E-value=0.19  Score=33.78  Aligned_cols=67  Identities=15%  Similarity=0.085  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 043950           40 QLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG  109 (458)
Q Consensus        40 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~  109 (458)
                      ...|++++.++.+.  +.....+.+.++++.++++....+...+|-.|..+|+-++. +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            45789999999775  45566666779999999999877667999999999999998 677777666554

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.92  E-value=3.3  Score=38.72  Aligned_cols=230  Identities=13%  Similarity=0.089  Sum_probs=134.9

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHcCCC---hhhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCC
Q 043950           71 FVEFLMREDYPQLQYEAAWALTNIASGT---SMNTNVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVAADS  140 (458)
Q Consensus        71 L~~ll~~~~~~~i~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~  140 (458)
                      +..++...+ ++-|..|+.....+....   ...++.+++.-+.+.+-+++.+       ++.-.+..++..|.-+|++.
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            556666666 588899999999988743   2345667888778999998875       23456667777888888765


Q ss_pred             Cch-hhHHhhhCCHHHHHHHhcccccHH------HHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCh-HHHHH
Q 043950          141 PGC-RNLVLREEALIPLLAQLNEHAKLS------MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDE-EVLSD  212 (458)
Q Consensus       141 ~~~-~~~~~~~~~l~~l~~~l~~~~~~~------~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~~~~~  212 (458)
                      +-. ...++  +.+|.++..+....+++      +...+..+|..++...+........|.++.+.++-.-.+. .-..-
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            321 12222  36888888887655554      7888999999999886666666668999999876654332 12222


Q ss_pred             HHHHHHHhc----cCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh--hh----HHHHHhcCChHHH
Q 043950          213 ACWTLSYLS----YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD--FQ----TQCIINHGAVPCL  282 (458)
Q Consensus       213 ~~~~l~~l~----~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~--~~----~~~~~~~~~~~~l  282 (458)
                      ++..+.-..    ..+.. ...+.  .++..+..-+...+...+-..|+.|..+.....  ..    .....-......+
T Consensus       173 al~Vlll~~~~~~cw~e~-~~~fl--ali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~  249 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSET-IERFL--ALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGV  249 (698)
T ss_pred             HHHHHHHHHHhcccCcCC-HHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHH
Confidence            222222111    12221 11121  124444444445566677788888875543222  11    1111111223334


Q ss_pred             HHHhccCChhhHHHHHHHHHHHhh
Q 043950          283 LALLIHNHKKSIKKVACWTISNIT  306 (458)
Q Consensus       283 ~~ll~~~~~~~v~~~a~~~l~nl~  306 (458)
                      ..+|++.-.+.-|.-|.....|+.
T Consensus       250 ~~IL~~kv~p~qr~pAL~Laa~~~  273 (698)
T KOG2611|consen  250 VAILQNKVAPSQRLPALILAANMM  273 (698)
T ss_pred             HHHHhcccCchhcChHHHHHHHHH
Confidence            555555444455556666666665

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.88  E-value=3.9  Score=39.34  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=81.6

Q ss_pred             hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh
Q 043950          188 FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD  267 (458)
Q Consensus       188 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~  267 (458)
                      ...+.+.+..+...+.++|..++..++..+..++..-.+ +...+-.|++..|.+-+-+.++.+|..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            456688888888888999999999999999988855443 3345667888888888888899999999999988853221


Q ss_pred             hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950          268 FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTI  302 (458)
Q Consensus       268 ~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l  302 (458)
                      .-     +..+...+..+++.+++.+||+.|..-+
T Consensus       165 ne-----en~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NE-----ENRIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             Ch-----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            11     1123456778888877889998765433

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.82  E-value=1.7  Score=41.26  Aligned_cols=165  Identities=12%  Similarity=0.067  Sum_probs=115.0

Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc----cchhhHHHHHhHhhcCChh
Q 043950          193 PALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP----SVLTPALWTVGNIVMGDDF  268 (458)
Q Consensus       193 ~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----~~~~~a~~~l~~l~~~~~~  268 (458)
                      .....+.+.+.+++...+..++..+..++. +......++...++..|.+++.+...    .+...++.+++.+....- 
T Consensus        83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   83 HYAKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            344567788888888887778888888874 44466778888999999999988643    455566666666654321 


Q ss_pred             hHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950          269 QTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA  347 (458)
Q Consensus       269 ~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l  347 (458)
                      .....+...++..+..+.+-. .+..+-..|...+-++..++....+.+.+.--+..|+..++..+..++..|+..+..+
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            222222233444444444221 1446677888888888887777778888888899999999999999999888888888


Q ss_pred             hcCCCHHHHHHH
Q 043950          348 TVRGTHEQIKYL  359 (458)
Q Consensus       348 ~~~~~~~~~~~l  359 (458)
                      ......+.++.+
T Consensus       241 ~~~a~~~~R~~~  252 (713)
T KOG2999|consen  241 FRKAPDDKRFEM  252 (713)
T ss_pred             HhhCChHHHHHH
Confidence            776655544443

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.78  E-value=3.2  Score=37.93  Aligned_cols=170  Identities=15%  Similarity=0.124  Sum_probs=121.3

Q ss_pred             HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHc--CChHHHHHHhccC-----C--------h
Q 043950          271 QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDA--GLIVPLVNVLQDA-----E--------F  334 (458)
Q Consensus       271 ~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~--~~~~~L~~ll~~~-----~--------~  334 (458)
                      +.+++.. ++.+...|.+. ...+...+...+..++. ........+...  --.+.+-+++...     +        +
T Consensus        51 ~~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~  128 (330)
T PF11707_consen   51 RSILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP  128 (330)
T ss_pred             HHHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence            3344333 78888999888 77788899999999998 666777776642  1233444444211     1        2


Q ss_pred             hhHHHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHH
Q 043950          335 DIKKEAALAIANATVRGTHEQIKYLV-REGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARL  413 (458)
Q Consensus       335 ~~~~~a~~~L~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  413 (458)
                      .+|...+..+..+...+++.....++ +.+.+..+..-+..++++++...+..+..-+-.++....         .....
T Consensus       129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r---------~~K~~  199 (330)
T PF11707_consen  129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSR---------STKCK  199 (330)
T ss_pred             CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCCh---------hhhhh
Confidence            89999999999999888877766665 567788899989888889999999999865544444321         12333


Q ss_pred             HHhcchHHHHHhhhcCCCh----HHHHHHHHHHHHhcCCCCC
Q 043950          414 VEEDEGFKKIEGLKSHDNN----GIREKAVKILETYWCGRVV  451 (458)
Q Consensus       414 ~~~~~~~~~l~~l~~~~~~----~v~~~a~~~l~~~~~~~~~  451 (458)
                      +-+...+..|..|-...++    .+.+.+...+..+.-+...
T Consensus       200 ~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  200 LFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             hcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCc
Confidence            3366678889988777777    8999999999888754433

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=94.76  E-value=2.6  Score=36.87  Aligned_cols=222  Identities=12%  Similarity=0.026  Sum_probs=128.2

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950           28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR--EDYPQLQYEAAWALTNIASGTSMNTNVV  105 (458)
Q Consensus        28 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~i~~~a~~~L~~l~~~~~~~~~~~  105 (458)
                      |=..|.++|+..|..|+..|..++..-....    ....-+..|+.++.+  .+ ......++..+..+... .......
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~-~~~~~~~   77 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKM-KNFSPES   77 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhC-cCCChhh
Confidence            4456889999999999999999887642221    111113444443322  22 33344446666666642 2211111


Q ss_pred             HhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCchhhHHh--hhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          106 IDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAADSPGCRNLVL--REEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       106 ~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                       ...++..+.+-..  +.....|..+...+..+......   .+.  ..+.+..++..+....||.-.-.+...+..+..
T Consensus        78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~---~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~  153 (262)
T PF14500_consen   78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHRE---ALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ  153 (262)
T ss_pred             -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHH---HHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence             0112233333222  23467788888888888755322   222  234677888888788899988888888888877


Q ss_pred             CCCCCChhhhhhhHHHHHHhhc-----C-CCh--HHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchh
Q 043950          182 GKPQPPFDQVRPALPALAQLIH-----L-DDE--EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT  253 (458)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~~ll~-----~-~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  253 (458)
                      .-+.  ....+.....+..+.-     . +|+  -.++..-..|.+.....+...     .-.++.|++-|.++...++.
T Consensus       154 ~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~  226 (262)
T PF14500_consen  154 EFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKL  226 (262)
T ss_pred             hccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHH
Confidence            6442  3333444444433332     1 222  123344444544443444332     23679999999999999999


Q ss_pred             hHHHHHhHhhcCC
Q 043950          254 PALWTVGNIVMGD  266 (458)
Q Consensus       254 ~a~~~l~~l~~~~  266 (458)
                      .++.+|...+...
T Consensus       227 D~L~tL~~c~~~y  239 (262)
T PF14500_consen  227 DSLQTLKACIENY  239 (262)
T ss_pred             HHHHHHHHHHHHC
Confidence            9999998876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.72  E-value=3.3  Score=41.98  Aligned_cols=194  Identities=18%  Similarity=0.121  Sum_probs=112.1

Q ss_pred             HHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHH--HHHHhhcCCCh-H
Q 043950          132 ALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALP--ALAQLIHLDDE-E  208 (458)
Q Consensus       132 ~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~--~l~~ll~~~~~-~  208 (458)
                      ++++++...+.....+.+.|++..+...+..-...++...+...+.+++...+..........+.  ....++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            55677777776667788899999999999766777889999999999987653333322222222  22233333333 5


Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHH-HHHHhc
Q 043950          209 VLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPC-LLALLI  287 (458)
Q Consensus       209 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-l~~ll~  287 (458)
                      .-..++..+..+....++..                   ....+..+...+......-+...........+.. +..++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~-------------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTT-------------------ECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCc-------------------cccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence            55666666666654433211                   1112222322222222111111111111222333 556666


Q ss_pred             cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHH
Q 043950          288 HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAI  344 (458)
Q Consensus       288 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L  344 (458)
                      .+..+.....|.|++.+++..++++.....+.++++.+.+.-... ..+++..+...+
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            555778889999999999998888877788888888777654322 344444444433

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=94.69  E-value=0.25  Score=38.58  Aligned_cols=75  Identities=12%  Similarity=0.044  Sum_probs=65.0

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhch
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      ++..+..-+.++++.++..|+..|-.++.++...+...+.+.+++..|..++. ..++.|+.+++.++........
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  117 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR  117 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence            56778888888999999999999999999988888888889999999999887 5677899999999988876544

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.63  E-value=1.1  Score=36.62  Aligned_cols=145  Identities=16%  Similarity=0.197  Sum_probs=89.2

Q ss_pred             chhhHHHHHhHhhcC-ChhhH----HHHH------hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 043950          251 VLTPALWTVGNIVMG-DDFQT----QCII------NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDA  319 (458)
Q Consensus       251 ~~~~a~~~l~~l~~~-~~~~~----~~~~------~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~  319 (458)
                      +|..|+.+|..++.. ++...    ..++      ..+.-+.|+..+-.++++++|..|+.++..+..+...+...--+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566777777777765 21111    1111      122334444444444499999999999999998876555443321


Q ss_pred             C-------------------ChHHHHHHhccC-ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHH
Q 043950          320 G-------------------LIVPLVNVLQDA-EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI  379 (458)
Q Consensus       320 ~-------------------~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  379 (458)
                      +                   +-..|+..+..+ +..+....+.++..++........+.=.-..++..+..++.+.|+++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1                   122344445544 67788889999999988765444322011123455556667889999


Q ss_pred             HHHHHHHHHHHHHhch
Q 043950          380 VTVCLEGLENILKVGE  395 (458)
Q Consensus       380 ~~~~~~~l~~l~~~~~  395 (458)
                      +..++.+++.++...+
T Consensus       162 ~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  162 RVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999998876544

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=94.57  E-value=2.9  Score=36.58  Aligned_cols=225  Identities=14%  Similarity=0.055  Sum_probs=135.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc-cccHHHHHHHHHHHHHhhcCCCCCChhh
Q 043950          112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE-HAKLSMLRIATWTLSKLCKGKPQPPFDQ  190 (458)
Q Consensus       112 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~  190 (458)
                      ..|-..|.++++.+|..++..|+.+...-+..   .....-+..++..+.+ -.|......++.++..|.... ......
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence            34566788899999999999999888665431   1222334555555532 134555555677777777443 222233


Q ss_pred             hhhhHHHHHHhhc--CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCCh
Q 043950          191 VRPALPALAQLIH--LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDD  267 (458)
Q Consensus       191 ~~~~l~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~  267 (458)
                      ...++..+..-..  +.....|..+...+..+..+...... -...+++..++..+..+ +|+-...++..+..+...-+
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            3444444444332  23467788888888888765443332 12235777788877764 66666666666666654333


Q ss_pred             hhHHHHHhcCChHHHHHHhc--------cCC-hh--hHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhh
Q 043950          268 FQTQCIINHGAVPCLLALLI--------HNH-KK--SIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDI  336 (458)
Q Consensus       268 ~~~~~~~~~~~~~~l~~ll~--------~~~-~~--~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~  336 (458)
                            + ....+.+.+.+.        .++ ++  -.+..-..+|.+....++....     -.+|.|++-|.+....+
T Consensus       157 ------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~  224 (262)
T PF14500_consen  157 ------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSV  224 (262)
T ss_pred             ------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHH
Confidence                  1 233444444442        111 22  2344555566665555544322     37899999999999999


Q ss_pred             HHHHHHHHHHhhcCCCH
Q 043950          337 KKEAALAIANATVRGTH  353 (458)
Q Consensus       337 ~~~a~~~L~~l~~~~~~  353 (458)
                      |..++.+|..++...+.
T Consensus       225 K~D~L~tL~~c~~~y~~  241 (262)
T PF14500_consen  225 KLDSLQTLKACIENYGA  241 (262)
T ss_pred             HHHHHHHHHHHHHHCCH
Confidence            99999999998765443

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=94.57  E-value=0.2  Score=39.18  Aligned_cols=81  Identities=16%  Similarity=0.219  Sum_probs=64.9

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC-CChHHHHHHHHHH
Q 043950          364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH-DNNGIREKAVKIL  442 (458)
Q Consensus       364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~~l  442 (458)
                      ++..|..-+.+.++.++..++.+|..+++.....            |...+...+.++.|..+... .+++|++++..++
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li  105 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV  105 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            4667777788899999999999999999875543            67777788889999988766 7899999999999


Q ss_pred             HHhcCCCCCCCCCC
Q 043950          443 ETYWCGRVVGPQLG  456 (458)
Q Consensus       443 ~~~~~~~~~~~~~~  456 (458)
                      ......-..+|+|+
T Consensus       106 ~~W~~~f~~~~~l~  119 (144)
T cd03568         106 KQWADEFKNDPSLS  119 (144)
T ss_pred             HHHHHHhCCCcccH
Confidence            88755555556553

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.47  E-value=0.61  Score=45.40  Aligned_cols=149  Identities=15%  Similarity=0.120  Sum_probs=102.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-Ch----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q 043950           67 VVPRFVEFLMREDYPQLQYEAAWALTNIASG-TS----MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP  141 (458)
Q Consensus        67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-~~----~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  141 (458)
                      .=|.|.+-|+..+ .++|..|+..+.++--- +|    +..+.+++.. ...+-.+|.++.+.+|..|+..+..+...-.
T Consensus       175 ~~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW  252 (1005)
T KOG1949|consen  175 YKPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFW  252 (1005)
T ss_pred             HhHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            3455666677888 79999999999987541 22    3345555544 6788999999999999999888877754321


Q ss_pred             ch--hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950          142 GC--RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY  219 (458)
Q Consensus       142 ~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~  219 (458)
                      ..  ...+.  ..+.+++.-+..+...+++-.....+..+..++  ........++|.+-..+.++...++..+...+..
T Consensus       253 e~iP~~i~~--~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  253 EMIPPTILI--DLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HHcCHHHHH--HHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence            10  01111  134444444545566678888888888887763  3445567888888889999999999888887776


Q ss_pred             hc
Q 043950          220 LS  221 (458)
Q Consensus       220 l~  221 (458)
                      +-
T Consensus       329 ik  330 (1005)
T KOG1949|consen  329 IK  330 (1005)
T ss_pred             HH
Confidence            64

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.29  E-value=3.2  Score=35.78  Aligned_cols=202  Identities=18%  Similarity=0.129  Sum_probs=115.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHH
Q 043950           68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV  147 (458)
Q Consensus        68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  147 (458)
                      ++.|+.-+....+++.+...+..|..++.++.....     -++..|..+.+.+....+..+.+.+..+-..++..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            445555344444489999999999999996422222     235677777777777776677777777765443321   


Q ss_pred             hhhCCHHHHHHHhc---------ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCChHHHHHHHHHH
Q 043950          148 LREEALIPLLAQLN---------EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLI-HLDDEEVLSDACWTL  217 (458)
Q Consensus       148 ~~~~~l~~l~~~l~---------~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l  217 (458)
                         +.+..++....         .+...+.......++..+|...|.    ....+++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               23444444410         112233444445678888887665    4577888888888 788888999999999


Q ss_pred             HHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhccC
Q 043950          218 SYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHN  289 (458)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~  289 (458)
                      ..++...-  .+ +  ......+.+-+..+ .+.+....+..+..+....- ..........++..+.++..+.
T Consensus       147 ~~Lc~~~v--vd-~--~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEV--VD-F--YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhh--cc-H--HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            99983221  11 1  12334444444433 23333333333333322211 1111223445677777777666

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.28  E-value=7.3  Score=39.93  Aligned_cols=240  Identities=15%  Similarity=0.151  Sum_probs=135.5

Q ss_pred             HcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC----CCC----HHHHHHHHH
Q 043950           64 QAGVVPRFVEFLMRED----YPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA----SPS----DDVREQAVW  131 (458)
Q Consensus        64 ~~~~i~~L~~ll~~~~----~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~~~~~a~~  131 (458)
                      +.|++..++.++.+..    ..+.....+..|...+. -+.+|+.+++.|+++.|+..+.    ...    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            4578888888887633    13556667777777777 6899999999999999998874    333    677777777


Q ss_pred             HHHHhhcCCCc--hh---hHHh-------hhCCHHHHHHHhccc---ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHH
Q 043950          132 ALGNVAADSPG--CR---NLVL-------REEALIPLLAQLNEH---AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALP  196 (458)
Q Consensus       132 ~L~~l~~~~~~--~~---~~~~-------~~~~l~~l~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~  196 (458)
                      ++..+......  ..   ....       ....+..+++.+...   .++.+....+.+|-.|+.+........+..+-|
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p  273 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP  273 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence            77766633211  00   0000       112266667776432   367888899999999998754333322233322


Q ss_pred             HHHHhhc--CCChHHHHHHHHHHHHhccC----C--hhhHHHHHHhCcHHHHHHHhCCCCc----------------cch
Q 043950          197 ALAQLIH--LDDEEVLSDACWTLSYLSYG----T--NDKIQVVIEAGVCRRLVELLGHPSP----------------SVL  252 (458)
Q Consensus       197 ~l~~ll~--~~~~~~~~~~~~~l~~l~~~----~--~~~~~~~~~~~~i~~L~~ll~~~~~----------------~~~  252 (458)
                      .+ .+=.  .....--...+.+++.++..    .  ....+.+++.|++...+..+...-+                .-.
T Consensus       274 ~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL  352 (802)
T PF13764_consen  274 YL-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL  352 (802)
T ss_pred             hc-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence            22 1111  01111112235555555532    1  2345678889999988887754221                122


Q ss_pred             hhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950          253 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT  306 (458)
Q Consensus       253 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~  306 (458)
                      ..++..|.-++.++... +..+..++++.+..+=+...+..+-.-|-.+|-.+.
T Consensus       353 p~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~  405 (802)
T PF13764_consen  353 PYILRLLRGLARGHEPT-QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALA  405 (802)
T ss_pred             HHHHHHHHHHHhcCHHH-HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHh
Confidence            34567777777766544 444556667444333332213334333333443333

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.17  E-value=1.2  Score=43.51  Aligned_cols=168  Identities=15%  Similarity=0.151  Sum_probs=114.5

Q ss_pred             CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHH
Q 043950          205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL  283 (458)
Q Consensus       205 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~  283 (458)
                      +|+.++..|.-++..+..-+.+...     .-+|.++..+. +++|.+|.+|.-.++.++-......+.     .-..+.
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy  977 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY  977 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence            6888988888888877654443222     34688888887 789999999999998886543322222     244567


Q ss_pred             HHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 043950          284 ALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREG  363 (458)
Q Consensus       284 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~  363 (458)
                      .-|.+. +..||+.+..++.++.....     +--.|-++.+...|.++|.++...|-..+..++...+.      +-+|
T Consensus       978 rrL~De-~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt------~yn~ 1045 (1128)
T COG5098         978 RRLGDE-DADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT------MYNG 1045 (1128)
T ss_pred             HHhcch-hhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc------hhhh
Confidence            777777 89999999999999875321     11247888999999999999999999999999875432      2234


Q ss_pred             ChHHHHhhccC---CCHHHHHHHHHHHHHHHHhch
Q 043950          364 CIKPLCDLLLC---VDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       364 ~l~~L~~ll~~---~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      +++.+..+-.+   .+.. -+..++.|..++....
T Consensus      1046 fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ker 1079 (1128)
T COG5098        1046 FIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKER 1079 (1128)
T ss_pred             hHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHH
Confidence            44444333321   1222 3455666666665443

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.16  E-value=2.4  Score=40.23  Aligned_cols=158  Identities=14%  Similarity=0.132  Sum_probs=110.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC---HHHHHHHHHHHHHHcCCChhh
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY---PQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      ...+.+.+.++++..+..|+..|..+..+  .....+++...++..|..++.+...   .++...+++++..+..+.--.
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            45778889999999999999998888443  6778889999999999999988762   345555555555554432110


Q ss_pred             HHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950          102 TNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l  179 (458)
                      - ..+...++.....+.+.  .+..+-..|+..|-++...++..++.+.+.-.+..++.++ ...+..+...|...+..+
T Consensus       163 W-~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  163 W-ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             e-eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence            0 11122233444444422  3455667788889898888887788888888899999999 666777778888888888


Q ss_pred             hcCCCCC
Q 043950          180 CKGKPQP  186 (458)
Q Consensus       180 ~~~~~~~  186 (458)
                      ....+..
T Consensus       241 ~~~a~~~  247 (713)
T KOG2999|consen  241 FRKAPDD  247 (713)
T ss_pred             HhhCChH
Confidence            7765433

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.16  E-value=4.7  Score=37.37  Aligned_cols=95  Identities=16%  Similarity=0.205  Sum_probs=59.6

Q ss_pred             hccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCH-HHHHHHHHHHHHHcCCCh
Q 043950           22 LEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYP-QLQYEAAWALTNIASGTS   99 (458)
Q Consensus        22 ~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-~i~~~a~~~L~~l~~~~~   99 (458)
                      .+.+..++..+.+ ....+|..++..|+.-+..  +..++.+...|.+..+++.+.+..+. -....++.++.-++.+ .
T Consensus        20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~--~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~   96 (361)
T PF07814_consen   20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCAD--PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-G   96 (361)
T ss_pred             HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC--HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-C
Confidence            3457788888884 4577888888888877554  68899999999999999999554423 3333444444444442 3


Q ss_pred             hhHHHHHhCCChHHHHHhhC
Q 043950          100 MNTNVVIDHGAVPIFVKLLA  119 (458)
Q Consensus       100 ~~~~~~~~~~~i~~L~~ll~  119 (458)
                      .....+.+.+....++.++.
T Consensus        97 ~~~~l~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen   97 LNMHLLLDRDSLRLLLKLLK  116 (361)
T ss_pred             cchhhhhchhHHHHHHHHhc
Confidence            33333333444444455554

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=94.12  E-value=2.3  Score=42.95  Aligned_cols=161  Identities=16%  Similarity=0.130  Sum_probs=94.4

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHHhhcCC--C-------chhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHH
Q 043950          111 VPIFVKLLAS----PSDDVREQAVWALGNVAADS--P-------GCRNLVLREEALIPLLAQLN---EHAKLSMLRIATW  174 (458)
Q Consensus       111 i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~--~-------~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~  174 (458)
                      +..+..++++    .++.++..|+.+++.+....  .       ...........++.+...+.   ...+.+-+..++.
T Consensus       433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk  512 (618)
T PF01347_consen  433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK  512 (618)
T ss_dssp             HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence            5566666654    56778888888888776311  0       00011122235666666664   3445577788899


Q ss_pred             HHHHhhcCCCCCChhhhhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC--Cc
Q 043950          175 TLSKLCKGKPQPPFDQVRPALPALAQLIHLD---DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP--SP  249 (458)
Q Consensus       175 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~  249 (458)
                      +|+|+-.          ...++.+.+++...   +..++..|++++..++...+..        +.+.+.+++.+.  +.
T Consensus       513 aLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~  574 (618)
T PF01347_consen  513 ALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDP  574 (618)
T ss_dssp             HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-H
T ss_pred             HhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCCh
Confidence            9999843          35777888888766   6788999999999887555533        335666776653  45


Q ss_pred             cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHH
Q 043950          250 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVAC  299 (458)
Q Consensus       250 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~  299 (458)
                      ++|..|+..|...   +|..       ..+..+...+..+++.+|.....
T Consensus       575 EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~  614 (618)
T PF01347_consen  575 EVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVY  614 (618)
T ss_dssp             HHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHH
T ss_pred             hHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHH
Confidence            6888887666432   3322       24666777777665666655433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.01  E-value=0.32  Score=39.24  Aligned_cols=114  Identities=18%  Similarity=0.128  Sum_probs=80.3

Q ss_pred             CcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc---CCH
Q 043950          235 GVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA---GNR  310 (458)
Q Consensus       235 ~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~---~~~  310 (458)
                      .....+..++++++..-|..++..+...+..++ +....- -...+..++.+|+.+....+++.++.++..+..   +.+
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH-GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            467788899999988899999999988887653 222111 135788899999988677889999999998874   455


Q ss_pred             HHHHHHHH---cCChHHHHHHhccCChhhHHHHHHHHHHhhcCC
Q 043950          311 EQIQAVID---AGLIVPLVNVLQDAEFDIKKEAALAIANATVRG  351 (458)
Q Consensus       311 ~~~~~l~~---~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  351 (458)
                      +...++..   .++++.++.+++.  ......++.+|..+....
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH  145 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence            54444443   2345555555554  567778888888887643

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=93.92  E-value=14  Score=41.78  Aligned_cols=270  Identities=12%  Similarity=0.035  Sum_probs=144.6

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCC--CccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950           28 MVAGVWSDDNSLQLEATTQFRILLSIER--SPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVV  105 (458)
Q Consensus        28 l~~~l~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  105 (458)
                      +++.-.+.+..+...|+..|++++..--  .+....=.+..++..|..++.+....++++..+.++.++.....    .-
T Consensus      1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~n 1217 (1780)
T PLN03076       1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NN 1217 (1780)
T ss_pred             HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hh
Confidence            3443345567889999999988765321  11111223456788888888776668999999999999876322    22


Q ss_pred             HhCCChHHHHHhhC----CCCHHHHHHHHHHHHHhhcCCCc-h----hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHH
Q 043950          106 IDHGAVPIFVKLLA----SPSDDVREQAVWALGNVAADSPG-C----RNLVLREEALIPLLAQLNEHAKLSMLRIATWTL  176 (458)
Q Consensus       106 ~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~-~----~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l  176 (458)
                      +.. +.+.+..++.    ...+.+.+.|..++..+..+.-. .    ...+.  ..+..+.+...+..+.++--.++..|
T Consensus      1218 IkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL 1294 (1780)
T PLN03076       1218 VKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFL 1294 (1780)
T ss_pred             hhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHH
Confidence            333 4666666665    36688888898888877644211 0    01111  23444444443333344444444444


Q ss_pred             HHh----hcCC-----C------------------C------CChh---hhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950          177 SKL----CKGK-----P------------------Q------PPFD---QVRPALPALAQLIHLDDEEVLSDACWTLSYL  220 (458)
Q Consensus       177 ~~l----~~~~-----~------------------~------~~~~---~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l  220 (458)
                      +++    ....     .                  .      ....   .--.++..+..+..+...+||..|+..|..+
T Consensus      1295 ~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~i 1374 (1780)
T PLN03076       1295 RFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDT 1374 (1780)
T ss_pred             HHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            433    1110     0                  0      0000   1122333444455678899999999998877


Q ss_pred             ccCCh-----hhHHHHHHhCcHHHHHHHhCCC----------------C-c------cchhhHHHHHhHhhcCCh---hh
Q 043950          221 SYGTN-----DKIQVVIEAGVCRRLVELLGHP----------------S-P------SVLTPALWTVGNIVMGDD---FQ  269 (458)
Q Consensus       221 ~~~~~-----~~~~~~~~~~~i~~L~~ll~~~----------------~-~------~~~~~a~~~l~~l~~~~~---~~  269 (458)
                      .....     +.-..+.. +++-.++..++..                + .      -+...+..+|..++.--.   +.
T Consensus      1375 L~~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~ 1453 (1780)
T PLN03076       1375 LRNHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPT 1453 (1780)
T ss_pred             HHHhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            73322     12222222 3444444444310                0 0      012333334444432111   22


Q ss_pred             HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      ...++ .+++..|..++..+ +..+.+.+..++.++..
T Consensus      1454 L~~~L-~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1454 VNPLL-KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             HHHHH-HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            22222 24556666666666 77888888888888875

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.80  E-value=0.34  Score=34.46  Aligned_cols=73  Identities=15%  Similarity=0.122  Sum_probs=58.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM  100 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  100 (458)
                      .+...++.+.++.+.+|-+++..|+++.... +  .......+++..+...+++++ +-+-..|+.+|..++...++
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence            4667788889999999999999999998875 3  222223467888889999998 79999999999999985443

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=93.74  E-value=1.6  Score=32.77  Aligned_cols=104  Identities=14%  Similarity=0.187  Sum_probs=69.0

Q ss_pred             HhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCch
Q 043950          328 VLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDV  407 (458)
Q Consensus       328 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~  407 (458)
                      ..++.+...-.....=+++++.. +......     +++.|..-|+.+++.|+.+++.+|..++..+...          
T Consensus         9 ATsdd~~p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~----------   72 (122)
T cd03572           9 ATSDDDEPTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD----------   72 (122)
T ss_pred             HhcCCCCCCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH----------
Confidence            33333333444455556666654 3233333     4778888888899999999999999999877643          


Q ss_pred             hHHHHHHH-hcchHHHHHhhhcC--------CChHHHHHHHHHHHHhcCCC
Q 043950          408 NQYARLVE-EDEGFKKIEGLKSH--------DNNGIREKAVKILETYWCGR  449 (458)
Q Consensus       408 ~~~~~~~~-~~~~~~~l~~l~~~--------~~~~v~~~a~~~l~~~~~~~  449 (458)
                        |...+. ....++.+.+....        ++..|+..|..++.-.|..+
T Consensus        73 --f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          73 --FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             --HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence              343333 45556666666543        33568999999999998765

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.68  E-value=5.1  Score=42.65  Aligned_cols=97  Identities=14%  Similarity=0.096  Sum_probs=64.0

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---cc---ccHHHHHHHHHHHHHhhcCC-CCCChhhhh
Q 043950          120 SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---EH---AKLSMLRIATWTLSKLCKGK-PQPPFDQVR  192 (458)
Q Consensus       120 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~---~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~  192 (458)
                      ++..+++.....++.++.....+   .+.. | -+.+++.+.   +.   ....+.+.+..++.-++.+. +........
T Consensus       853 ~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~  927 (1610)
T KOG1848|consen  853 SRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL  927 (1610)
T ss_pred             CccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence            35567778888888888755432   1221 2 344444442   22   24567788888888888876 666777778


Q ss_pred             hhHHHHHHhhc-CCChHHHHHHHHHHHHhc
Q 043950          193 PALPALAQLIH-LDDEEVLSDACWTLSYLS  221 (458)
Q Consensus       193 ~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~  221 (458)
                      +++..+..+-+ ..|..+--.++..+++++
T Consensus       928 ~lidtl~~fs~QktdlNISltAi~lfWtvs  957 (1610)
T KOG1848|consen  928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVS  957 (1610)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence            88888887776 456777777777777765

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.68  E-value=0.3  Score=34.69  Aligned_cols=84  Identities=13%  Similarity=0.158  Sum_probs=63.5

Q ss_pred             HHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH
Q 043950          237 CRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV  316 (458)
Q Consensus       237 i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  316 (458)
                      +...+..+.++...+|..++..|..+.....  ....-..+++..+...++++ |+-|=-.|..+++.++...++.    
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~----   77 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE----   77 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH----
Confidence            4566777888999999999999999998666  11122346788899999999 8889999999999999754442    


Q ss_pred             HHcCChHHHHHHhcc
Q 043950          317 IDAGLIVPLVNVLQD  331 (458)
Q Consensus       317 ~~~~~~~~L~~ll~~  331 (458)
                          +++.|++...+
T Consensus        78 ----vl~~L~~~y~~   88 (92)
T PF10363_consen   78 ----VLPILLDEYAD   88 (92)
T ss_pred             ----HHHHHHHHHhC
Confidence                55666665544

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=93.66  E-value=5.7  Score=37.77  Aligned_cols=275  Identities=11%  Similarity=0.075  Sum_probs=128.0

Q ss_pred             HHHHHHhhcC---CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCch
Q 043950           68 VPRFVEFLMR---EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGC  143 (458)
Q Consensus        68 i~~L~~ll~~---~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~  143 (458)
                      +..|+.++..   .+++.+-...++++.-+-.+-......+++ ..+..+....++ .++..-.....+++.+.+.....
T Consensus        28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~  106 (435)
T PF03378_consen   28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA  106 (435)
T ss_dssp             HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence            4445555533   222445555556655544433334343332 233444444444 45666666666666665332111


Q ss_pred             -hh--HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950          144 -RN--LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP-QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY  219 (458)
Q Consensus       144 -~~--~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~  219 (458)
                       .+  .-.+...++.+...| ..+-.++.-++...++.+.+..+ .........++|.+..-.-.....-.-...+.|..
T Consensus       107 ~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a  185 (435)
T PF03378_consen  107 DPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQA  185 (435)
T ss_dssp             GHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHH
Confidence             11  122344566666666 44445677777788887776654 22223445555554422221111122333334444


Q ss_pred             hccCChhhHHHHHHh----CcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh-HHHHHhcCChHHHHHHhccCChhhH
Q 043950          220 LSYGTNDKIQVVIEA----GVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ-TQCIINHGAVPCLLALLIHNHKKSI  294 (458)
Q Consensus       220 l~~~~~~~~~~~~~~----~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~v  294 (458)
                      .....+...   ...    +++..+-+++.+...  -..++..|..+...-+.. .+..+ ..++..+..-|++....+.
T Consensus       186 ~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf  259 (435)
T PF03378_consen  186 YIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKF  259 (435)
T ss_dssp             HHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHH
T ss_pred             HHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHH
Confidence            332222221   111    344445566666432  245777777776554432 22211 2356666666665545666


Q ss_pred             HHHHHHHHHHhhc-CCHHHHHHHHH---cCChHHHHHHh-----cc-CChhhHHHHHHHHHHhhcC
Q 043950          295 KKVACWTISNITA-GNREQIQAVID---AGLIVPLVNVL-----QD-AEFDIKKEAALAIANATVR  350 (458)
Q Consensus       295 ~~~a~~~l~nl~~-~~~~~~~~l~~---~~~~~~L~~ll-----~~-~~~~~~~~a~~~L~~l~~~  350 (458)
                      .+.-+..++.++. .++...-..++   .|++..++.-+     +. ....-|+-++.++.++...
T Consensus       260 ~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  260 VKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            6666666666654 34444444443   56555555522     11 1233466677777776643

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.60  E-value=0.89  Score=37.51  Aligned_cols=94  Identities=14%  Similarity=0.087  Sum_probs=65.9

Q ss_pred             CCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CC--hHHHHHhhCCCCHHHHHHHHHHHHHh
Q 043950           66 GVVPRFVEFLMR-----EDYPQLQYEAAWALTNIASGTSMNTNVVIDH--GA--VPIFVKLLASPSDDVREQAVWALGNV  136 (458)
Q Consensus        66 ~~i~~L~~ll~~-----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~~~~~a~~~L~~l  136 (458)
                      ..+..|++.+..     .+...-....+.++.|++. .++.|..+.+.  +.  +..|+.+..+.+..-|..++.++.|+
T Consensus        52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc  130 (192)
T PF04063_consen   52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC  130 (192)
T ss_pred             HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence            357777777755     1223456678889999999 69999999865  34  77888888888888888999999999


Q ss_pred             hcCCCchhhHHhh--hCCHHHHHHHh
Q 043950          137 AADSPGCRNLVLR--EEALIPLLAQL  160 (458)
Q Consensus       137 ~~~~~~~~~~~~~--~~~l~~l~~~l  160 (458)
                      |.+.......+..  .+.++.++--+
T Consensus       131 cFd~~~H~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen  131 CFDTDSHEWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             hccHhHHHHhcCchhhhhHHHHHhhc
Confidence            9877654333322  23445444444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.44  E-value=1  Score=37.18  Aligned_cols=113  Identities=16%  Similarity=0.129  Sum_probs=75.2

Q ss_pred             CCCCccchhhHHHHHhHhhcCChhhHHHHHh----------------cCChHHHHHHhccCC-----hhhHHHHHHHHHH
Q 043950          245 GHPSPSVLTPALWTVGNIVMGDDFQTQCIIN----------------HGAVPCLLALLIHNH-----KKSIKKVACWTIS  303 (458)
Q Consensus       245 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~l~~ll~~~~-----~~~v~~~a~~~l~  303 (458)
                      .+++......++..|+|+++..... ..+++                ...+..|+..+..+.     ...--...+.+++
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            3455566777888999998744333 32221                235677777776621     2334457888999


Q ss_pred             HhhcCCHHHHHHHHHc--CC--hHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043950          304 NITAGNREQIQAVIDA--GL--IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR  361 (458)
Q Consensus       304 nl~~~~~~~~~~l~~~--~~--~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~  361 (458)
                      |++.. ++.++.+.+.  +.  +..|+..+.+.+..-|.-++.++.|++...  +....+..
T Consensus        84 NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~  142 (192)
T PF04063_consen   84 NLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLS  142 (192)
T ss_pred             HhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcC
Confidence            99864 5777777753  34  777888888887788889999999999843  34455444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.41  E-value=0.49  Score=36.95  Aligned_cols=80  Identities=21%  Similarity=0.304  Sum_probs=62.7

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc-CCChHHHHHHHHHH
Q 043950          364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS-HDNNGIREKAVKIL  442 (458)
Q Consensus       364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~v~~~a~~~l  442 (458)
                      ++..|..-+.+.++.++..|+.+|..+++....            .|...+...+.++.+..+.. ..++.|++++..++
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li  109 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT------------HFHDEVASREFMDELKDLIKTTKNEEVRQKILELI  109 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH------------HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            467788888889999999999999999986433            25777778888889988864 67889999999999


Q ss_pred             HHhcCCCCCCCCC
Q 043950          443 ETYWCGRVVGPQL  455 (458)
Q Consensus       443 ~~~~~~~~~~~~~  455 (458)
                      ......-..+|.|
T Consensus       110 ~~W~~~f~~~~~l  122 (142)
T cd03569         110 QAWALAFRNKPQL  122 (142)
T ss_pred             HHHHHHhCCCccc
Confidence            8875544444554

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.26  E-value=0.64  Score=38.48  Aligned_cols=146  Identities=14%  Similarity=0.205  Sum_probs=91.7

Q ss_pred             CCHHHHH-HHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC----CCHHHHHHHHHHHHHHcCCC-hhhHHHHHhC
Q 043950           35 DDNSLQL-EATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE----DYPQLQYEAAWALTNIASGT-SMNTNVVIDH  108 (458)
Q Consensus        35 ~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~  108 (458)
                      +...-+. .|+..|.-+++.  ++....++++.+--.+...|...    ..+-+|..++.+++.+...+ .+....+...
T Consensus       111 ~~~snRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT  188 (315)
T COG5209         111 ERESNRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT  188 (315)
T ss_pred             chhhhHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence            3444454 455555566665  56666666665533444444322    22467889999999998744 4455566678


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhh-------hCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          109 GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR-------EEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       109 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                      .++|..++.+..+++--+..++.++..+..++...+-....       ...+..++..+-+..+..+.++++.+...+|.
T Consensus       189 eivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         189 EIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            99999999999999988999999999888776543322111       11233344444344555666666666666665


Q ss_pred             C
Q 043950          182 G  182 (458)
Q Consensus       182 ~  182 (458)
                      +
T Consensus       269 ~  269 (315)
T COG5209         269 K  269 (315)
T ss_pred             C
Confidence            4

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.03  E-value=4  Score=40.26  Aligned_cols=137  Identities=11%  Similarity=0.013  Sum_probs=92.0

Q ss_pred             hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHHHhHhhcCC
Q 043950          188 FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWTVGNIVMGD  266 (458)
Q Consensus       188 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~  266 (458)
                      ......++|.|..-+++.+..+++.++..+..+++.-+   -.++...+++.+..+.. +.+..++..++.|++.++..-
T Consensus       384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l  460 (700)
T KOG2137|consen  384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL  460 (700)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence            34557888888888889999999999999999886544   22455667888877743 467788999999999887211


Q ss_pred             hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950          267 DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE  333 (458)
Q Consensus       267 ~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~  333 (458)
                          +...-...+..+.+..+.. ++.+......+..++....+.. ..++-..++|.++-+...+.
T Consensus       461 ----D~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  461 ----DKAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             ----HHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence                1111113355555556666 7888877777777776522121 23344468888887776654

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=92.81  E-value=0.26  Score=44.15  Aligned_cols=83  Identities=18%  Similarity=0.231  Sum_probs=70.3

Q ss_pred             CChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc-CCChHHHHHHHHH
Q 043950          363 GCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS-HDNNGIREKAVKI  441 (458)
Q Consensus       363 ~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~v~~~a~~~  441 (458)
                      ++++.|..-+.+.++.|+..++.++..+.....+.            |+..+....+...|..|.. +..+.|+++...+
T Consensus        45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~------------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~l  112 (462)
T KOG2199|consen   45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR------------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDL  112 (462)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH------------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHH
Confidence            35788889999999999999999999998765553            6777778888888999877 7789999999999


Q ss_pred             HHHhcCCCCCCCCCCC
Q 043950          442 LETYWCGRVVGPQLGL  457 (458)
Q Consensus       442 l~~~~~~~~~~~~~~~  457 (458)
                      +....+.-..||+|++
T Consensus       113 v~eWsee~K~Dp~lsL  128 (462)
T KOG2199|consen  113 VKEWSEEFKKDPSLSL  128 (462)
T ss_pred             HHHHHHHhccCcchhH
Confidence            9888887788998875

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.75  E-value=3.3  Score=40.80  Aligned_cols=135  Identities=10%  Similarity=0.077  Sum_probs=92.4

Q ss_pred             HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH
Q 043950          233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ  312 (458)
Q Consensus       233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  312 (458)
                      ...+++.|...+++.+..++..++..+..++..-+   -..++..++|.+..+.....+..++..++.+++-++.    .
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~  459 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----R  459 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----H
Confidence            34688899999999999999999999988876444   2344556788888876555478899999999998872    2


Q ss_pred             HHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC
Q 043950          313 IQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD  376 (458)
Q Consensus       313 ~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~  376 (458)
                      ++...-...+..+.+..+..++.+....+.+..++..... .. ..++.+.+++.+..+...+.
T Consensus       460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~-~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY-SG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc-cc-eeeehhhhhhhhhhhhhccc
Confidence            2222212245556666667788888888877777765422 11 34455677777777765543

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.56  E-value=0.79  Score=35.39  Aligned_cols=76  Identities=9%  Similarity=-0.036  Sum_probs=64.5

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhchh
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC---VDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      ++..|..-+.++++.++..|+..|-.++.++...+...+....++..|..++..   .++.|+.+++..+.........
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            567788888899999999999999999999988888888887888889998875   4778999999999888765443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=92.50  E-value=9.1  Score=35.69  Aligned_cols=307  Identities=14%  Similarity=0.116  Sum_probs=155.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCcc-HHHHHHcCCHHHHHHhhc----C------CCCHHHHHHHHHHHHHHcCCChhh
Q 043950           33 WSDDNSLQLEATTQFRILLSIERSPR-IEDVIQAGVVPRFVEFLM----R------EDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        33 ~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~i~~L~~ll~----~------~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      .+.+.+-+..|...|.+........+ ...+.+  -++.+++.++    +      +.+.++..+|+++++.+.. +++.
T Consensus         3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i   79 (372)
T PF12231_consen    3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI   79 (372)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence            34555666666666666655432222 222221  2344444332    1      2135888999999999987 4544


Q ss_pred             HHHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---c-cccHHHHHHH
Q 043950          102 TNVVIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---E-HAKLSMLRIA  172 (458)
Q Consensus       102 ~~~~~~~~---~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~-~~~~~~~~~a  172 (458)
                      ...+-+.-   ++...+..+..  .+..+....+|+|..=-..     ..+.....+..++..+.   + -++..+....
T Consensus        80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er  154 (372)
T PF12231_consen   80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISER  154 (372)
T ss_pred             HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence            44333221   34455555543  4556777777777653221     11233334444444442   2 4556677888


Q ss_pred             HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC---ChhhHHH---HHHh----C-----cH
Q 043950          173 TWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG---TNDKIQV---VIEA----G-----VC  237 (458)
Q Consensus       173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~---~~~~~~~---~~~~----~-----~i  237 (458)
                      +.++.++....|.........-+|.++..+-+....++..+......+...   +......   ..+.    +     +.
T Consensus       155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~  234 (372)
T PF12231_consen  155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC  234 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence            888888888765444444455677777777777777777766555444311   1111111   1111    2     33


Q ss_pred             HHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc---CCHHHHH
Q 043950          238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA---GNREQIQ  314 (458)
Q Consensus       238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~~~~  314 (458)
                      +.+..++.+.+......-+|...-+.-+++....--.-...+...-..++++ ++.+|..|..+=..+..   .++....
T Consensus       235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~  313 (372)
T PF12231_consen  235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSP  313 (372)
T ss_pred             HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccH
Confidence            4456666663333333333332222222221111111134566666677788 89999887655444442   2222222


Q ss_pred             HHHHcCChHHHHHHhccC-Ch----hhHHHHHHHHHHhhc
Q 043950          315 AVIDAGLIVPLVNVLQDA-EF----DIKKEAALAIANATV  349 (458)
Q Consensus       315 ~l~~~~~~~~L~~ll~~~-~~----~~~~~a~~~L~~l~~  349 (458)
                      ..++- +..++...+..+ ..    +++..++..++++..
T Consensus       314 k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  314 KRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            22221 233344444433 22    667777777777764

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=92.43  E-value=0.85  Score=35.21  Aligned_cols=74  Identities=11%  Similarity=0.001  Sum_probs=62.5

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC--HHHHHHHHHHHHHHHHhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD--PKIVTVCLEGLENILKVG  394 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~~~~~l~~l~~~~  394 (458)
                      ++..|..-+.++++.++..|+..|-.++.++...+...+.+.+++..|..++..+.  +.|+.+++..+.......
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            56678888889999999999999999999988888888889999999999887643  348889988888776644

Unpublished observations. Domain of unknown function.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.36  E-value=4.9  Score=38.66  Aligned_cols=110  Identities=20%  Similarity=0.313  Sum_probs=80.5

Q ss_pred             hhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950           18 LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG   97 (458)
Q Consensus        18 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~   97 (458)
                      .....+.+..+++.+.+.|..++...+..|+.+..-  -..+....-.|.+..|.+-+-+.. +.+|.+|+.+|+.+-..
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~  162 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEM  162 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhc
Confidence            344557788899999999999999999999888443  445666677788888888777777 79999999999988653


Q ss_pred             --ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC
Q 043950           98 --TSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADS  140 (458)
Q Consensus        98 --~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~  140 (458)
                        +++++       ....|...++. ++.++|+.|+   .|+..++
T Consensus       163 ~~neen~-------~~n~l~~~vqnDPS~EVRr~al---lni~vdn  198 (885)
T COG5218         163 ELNEENR-------IVNLLKDIVQNDPSDEVRRLAL---LNISVDN  198 (885)
T ss_pred             cCChHHH-------HHHHHHHHHhcCcHHHHHHHHH---HHeeeCC
Confidence              23322       24566666765 7788998754   5555443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.35  E-value=1.4  Score=38.61  Aligned_cols=146  Identities=19%  Similarity=0.204  Sum_probs=102.2

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHH
Q 043950          192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ  271 (458)
Q Consensus       192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  271 (458)
                      ...+......|.+.|+......+..+..++....+....... .++..+++-+++....+-..|+.+++.+.......+.
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677888999999999999999998665544443332 4677788888888888999999999999765444433


Q ss_pred             HHHhcCChHHHHHHhccCC---hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhh
Q 043950          272 CIINHGAVPCLLALLIHNH---KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANAT  348 (458)
Q Consensus       272 ~~~~~~~~~~l~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~  348 (458)
                      .     -++.++..|....   +.=++..|-.+|..+..+-...       .+++.|+..+...++.++..++.++.+..
T Consensus       166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            3     2333444332221   2347888888998888643222       25777888888888899888888777776


Q ss_pred             cC
Q 043950          349 VR  350 (458)
Q Consensus       349 ~~  350 (458)
                      ..
T Consensus       234 ~r  235 (334)
T KOG2933|consen  234 IR  235 (334)
T ss_pred             ee
Confidence            53

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.23  E-value=10  Score=35.65  Aligned_cols=191  Identities=11%  Similarity=0.050  Sum_probs=115.4

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCC--CccHHHHHHcCCHHHHHHhhcCCC----CH--HHHHHHHHHHHHHcCCC
Q 043950           27 AMVAGVWSDDNSLQLEATTQFRILLSIER--SPRIEDVIQAGVVPRFVEFLMRED----YP--QLQYEAAWALTNIASGT   98 (458)
Q Consensus        27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~i~~L~~ll~~~~----~~--~i~~~a~~~L~~l~~~~   98 (458)
                      .+..+++..+.+-++.|+-...++..+.+  ..+.+.+.++-+.+.+-+++.+.+    .+  -.+..++.+|..++.. 
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-   93 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-   93 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence            46666777778889999999999987653  223556888888888888886543    12  2355677788888873 


Q ss_pred             hhhH--HHHHhCCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHH
Q 043950           99 SMNT--NVVIDHGAVPIFVKLLAS-PSD------DVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSML  169 (458)
Q Consensus        99 ~~~~--~~~~~~~~i~~L~~ll~~-~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~  169 (458)
                      ++..  ..++  +-||.|..++.. .++      .+.+-+..+|..++...+.. ..++..|+++.+.+...-.+...-.
T Consensus        94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~~~~~~~d~  170 (698)
T KOG2611|consen   94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYELPDGSHDM  170 (698)
T ss_pred             hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHhCCCCchhH
Confidence            4432  2222  458999998865 222      37778889999998876554 4566789999988666322211112


Q ss_pred             HHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950          170 RIATWTLSKLCKGK--PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS  221 (458)
Q Consensus       170 ~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  221 (458)
                      .-++.++--....-  -.........++..+..-+...+...+-..+..+..+.
T Consensus       171 alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  171 ALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             HHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            22222222222221  11112222333445555555556666777777776443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.20  E-value=0.69  Score=38.30  Aligned_cols=103  Identities=14%  Similarity=0.034  Sum_probs=75.9

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh
Q 043950          296 KVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD-----AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCD  370 (458)
Q Consensus       296 ~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~  370 (458)
                      ..|...+..++++ |+....+++..+=-.+...+..     ..+.+|..++..++.++.++++...+++....+++...+
T Consensus       118 cnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         118 CNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            3455555555554 4555556665543334444432     245688999999999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHHHhchhhcc
Q 043950          371 LLLCVDPKIVTVCLEGLENILKVGEAEKN  399 (458)
Q Consensus       371 ll~~~~~~v~~~~~~~l~~l~~~~~~~~~  399 (458)
                      +++...+--+..++.++..++.++...+.
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvGLqY  225 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVGLQY  225 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchhHHH
Confidence            99988877777888889988877766543

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=92.10  E-value=11  Score=37.70  Aligned_cols=159  Identities=16%  Similarity=0.193  Sum_probs=93.0

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhhc----CCCchhhHHhhhCCHHHHHHHhcc---cccHHHHHHHHHHHHH
Q 043950          110 AVPIFVKLLAS----PSDDVREQAVWALGNVAA----DSPGCRNLVLREEALIPLLAQLNE---HAKLSMLRIATWTLSK  178 (458)
Q Consensus       110 ~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~~a~~~l~~  178 (458)
                      .+..+..++.+    ..+.++..|+.+++++..    +.+.+... .....++.+...+..   ..+.+-+..++.+|+|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            35667777765    456788888888887763    22221111 112345566655532   2344445666777777


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhc---CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchh
Q 043950          179 LCKGKPQPPFDQVRPALPALAQLIH---LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLT  253 (458)
Q Consensus       179 l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~  253 (458)
                      +-.          ...++.+..++.   .....++..|+++|..++...+...        -+.+..+..+  .+.++|.
T Consensus       473 ~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      473 AGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             cCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence            643          234445555554   2346789999999998875544333        3556666665  3567888


Q ss_pred             hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHH
Q 043950          254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKV  297 (458)
Q Consensus       254 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~  297 (458)
                      .|+..+...   +|..       ..+..+...+..+++.+|+..
T Consensus       535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sf  568 (574)
T smart00638      535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASF  568 (574)
T ss_pred             HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHH
Confidence            887776333   2322       246667777776655666543

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.92  E-value=15  Score=36.94  Aligned_cols=321  Identities=12%  Similarity=0.052  Sum_probs=170.1

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCC-CccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950           23 EILPAMVAGVWSD-DNSLQLEATTQFRILLSIER-SPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM  100 (458)
Q Consensus        23 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  100 (458)
                      -....+.++++.. |..+++.+++.++-+..+-+ .+..-.-.-......+.++++.-..-+.+...+..|+.+.....+
T Consensus       526 l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e  605 (978)
T KOG1993|consen  526 LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE  605 (978)
T ss_pred             HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            3466677888865 78899999999988765431 111111122345556666666543245677777777776653333


Q ss_pred             hHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcC----CCchhhHHhhhCCHHHHHHHhcccccH---HHHHH
Q 043950          101 NTNVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAAD----SPGCRNLVLREEALIPLLAQLNEHAKL---SMLRI  171 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~l~~~l~~~~~~---~~~~~  171 (458)
                      ...... ..+++.+-.+-+  ++.+-+|...+.+|.|+...    ++.+.      ..+-+++++-.+..+|   .+.+.
T Consensus       606 ~I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~ED  678 (978)
T KOG1993|consen  606 HIAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLED  678 (978)
T ss_pred             hhhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhhh
Confidence            222111 111222222222  24566777778888888632    12211      1344555554333332   24444


Q ss_pred             HHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc-cCChhhHHHHHHhCcHHHHHHHhCCCCcc
Q 043950          172 ATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS-YGTNDKIQVVIEAGVCRRLVELLGHPSPS  250 (458)
Q Consensus       172 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  250 (458)
                      +...-.....+. ..-....-+++|.+...+.......+ .++.++.... -.++.... ....|++..+.+++.+-..+
T Consensus       679 gmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~e  755 (978)
T KOG1993|consen  679 GMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNE  755 (978)
T ss_pred             HHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHH
Confidence            443333333332 22233446677777777764443332 2333332222 12222222 33457888899988876555


Q ss_pred             chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh-ccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH-cCChHHHHH-
Q 043950          251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-IHNHKKSIKKVACWTISNITAGNREQIQAVID-AGLIVPLVN-  327 (458)
Q Consensus       251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~-  327 (458)
                      -....+.++..+...++ ........++++.+..-+ .....|.+-..-..+++.+...+++....+.+ ..-...++. 
T Consensus       756 gl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~  834 (978)
T KOG1993|consen  756 GLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAM  834 (978)
T ss_pred             HHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHH
Confidence            66667777777766555 334444567777765544 23325666667777777777666666555543 222223331 


Q ss_pred             -------Hhc-cCChhhHHHHHHHHHHhhcCCCHH
Q 043950          328 -------VLQ-DAEFDIKKEAALAIANATVRGTHE  354 (458)
Q Consensus       328 -------ll~-~~~~~~~~~a~~~L~~l~~~~~~~  354 (458)
                             +.. -.+++-|+--+-++..+...+.+.
T Consensus       835 li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~  869 (978)
T KOG1993|consen  835 LIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD  869 (978)
T ss_pred             HHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH
Confidence                   111 126666776777777777654443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.80  E-value=6.5  Score=32.47  Aligned_cols=145  Identities=17%  Similarity=0.146  Sum_probs=93.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      ++.+++...+++..++..|+..+..+....=..+.      ..+|.|+.+..+++ +.++..|...+..+....+.....
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence            67778888899999999999999988775422222      26899999999988 899999999999998866655544


Q ss_pred             HHhCCChHHHHHhhC---CCCH-HH---HHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc-------cHHHHH
Q 043950          105 VIDHGAVPIFVKLLA---SPSD-DV---REQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA-------KLSMLR  170 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~---~~~~-~~---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-------~~~~~~  170 (458)
                      -...| +..-..+-.   .+.. ..   ....+..+..+.......|..     .+..+++.+....       .+.-..
T Consensus        83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~  156 (187)
T PF12830_consen   83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLD  156 (187)
T ss_pred             HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHH
Confidence            44434 333333222   1111 11   444556666666655444444     4556666664322       334455


Q ss_pred             HHHHHHHHhhcC
Q 043950          171 IATWTLSKLCKG  182 (458)
Q Consensus       171 ~a~~~l~~l~~~  182 (458)
                      ...++..||+.-
T Consensus       157 ~~~Fla~nLA~l  168 (187)
T PF12830_consen  157 FLLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHHhcC
Confidence            566666666654

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.79  E-value=22  Score=38.56  Aligned_cols=115  Identities=13%  Similarity=0.165  Sum_probs=74.8

Q ss_pred             cCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHH-
Q 043950          276 HGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHE-  354 (458)
Q Consensus       276 ~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-  354 (458)
                      .+++|.|-.-|.+. +..+|..|...++.+......... =-...+....+.-+.+.+.++|.+++....++....... 
T Consensus       258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~  335 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA  335 (1266)
T ss_pred             HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence            37899999999998 999999999999999864322221 001224445555566667777777777777665542100 


Q ss_pred             ---------------------------------HHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950          355 ---------------------------------QIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       355 ---------------------------------~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~  393 (458)
                                                       +.-.+... .+..+.+.+.+....|+..|+..+..+++.
T Consensus       336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence                                             00011111 344455556678889999999999988873

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=91.70  E-value=1.7  Score=31.28  Aligned_cols=70  Identities=16%  Similarity=0.163  Sum_probs=56.9

Q ss_pred             HCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHH
Q 043950          361 REGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK  440 (458)
Q Consensus       361 ~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~  440 (458)
                      +...+..|++-+..++......++..+..+.+....              ...+.+.|+.+-+.++...-++..+.....
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~   93 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDE   93 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence            455677888888888877888899999998876443              677889999999999998888998888888


Q ss_pred             HHHH
Q 043950          441 ILET  444 (458)
Q Consensus       441 ~l~~  444 (458)
                      +++.
T Consensus        94 il~~   97 (98)
T PF14726_consen   94 ILDQ   97 (98)
T ss_pred             HHhc
Confidence            8764

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.65  E-value=6.8  Score=32.37  Aligned_cols=71  Identities=20%  Similarity=0.278  Sum_probs=56.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch
Q 043950           67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC  143 (458)
Q Consensus        67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  143 (458)
                      .++.+++++.+++ ..++..|+.++..+....--+.     ...+|.++.+..++++.++..|...+..+....+..
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            4677888888888 7999999999988877321111     135899999999999999999999999998766554

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.58  E-value=27  Score=39.07  Aligned_cols=231  Identities=16%  Similarity=0.078  Sum_probs=119.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhH
Q 043950           68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNL  146 (458)
Q Consensus        68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~  146 (458)
                      ...++..+..++ +..+-.+..+++.++..-++..  ++ .+..+..++-+.+ .++..|..-..+++.+-.+.......
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~~--f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSAP--FV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHhccccc--hH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            444455555666 6777777777777766321111  11 1224455555544 55556655556666665433222111


Q ss_pred             HhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC---hHHHHHH----------
Q 043950          147 VLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD---EEVLSDA----------  213 (458)
Q Consensus       147 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~---~~~~~~~----------  213 (458)
                      -.....+..++.+..++.+|.++..++.++..+...............+..+..++.+..   .++....          
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            112234667777776778889999999999988877644445555666666666665322   2222211          


Q ss_pred             ---HHHHHHhccCChh-hHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC
Q 043950          214 ---CWTLSYLSYGTND-KIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN  289 (458)
Q Consensus       214 ---~~~l~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~  289 (458)
                         ..+++.=...+.. ..........+-...-++.+++..+...+..++.++-...+.....   .-++..+..++.+.
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSSS 1110 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcch
Confidence               2222221111111 0111222223333444455667788888888888876555433221   12455566666555


Q ss_pred             ChhhHHHHHHHHHHHhh
Q 043950          290 HKKSIKKVACWTISNIT  306 (458)
Q Consensus       290 ~~~~v~~~a~~~l~nl~  306 (458)
                       ..-.|.....++..+.
T Consensus      1111 -~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1111 -YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             -hhhhhhhHHhhhhHHh
Confidence             3334444444444443

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=91.58  E-value=3.6  Score=32.94  Aligned_cols=146  Identities=11%  Similarity=0.056  Sum_probs=84.5

Q ss_pred             hhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh-CCCCccchhhHHHHHhHhhcCChh
Q 043950          191 VRPALPALAQLIHLD-DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL-GHPSPSVLTPALWTVGNIVMGDDF  268 (458)
Q Consensus       191 ~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~l~~l~~~~~~  268 (458)
                      ...+++.+..+++++ ++.++..++++++.+-.-++...+.+....  +   ..- ...+........... ......++
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~---~~~~~~~~~~~~~~~l~~~-~~~~~~ee   81 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--D---SKSSENSNDESTDISLPMM-GISPSSEE   81 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--C---ccccccccccchhhHHhhc-cCCCchHH
Confidence            356788888888866 589999999999999877775554222110  0   000 011111112112111 11111222


Q ss_pred             hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950          269 QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA  347 (458)
Q Consensus       269 ~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l  347 (458)
                          ..-..++..|+.+|+++.-..-...+..++.++... ......++-+  ++|.+++.+.+.+...++...+-|+.+
T Consensus        82 ----~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~--viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   82 ----YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ--VIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             ----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH--HhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                222346778888888774344455677777777642 1122333333  899999999877778888777777766


Q ss_pred             h
Q 043950          348 T  348 (458)
Q Consensus       348 ~  348 (458)
                      +
T Consensus       156 v  156 (160)
T PF11865_consen  156 V  156 (160)
T ss_pred             H
Confidence            5

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.43  E-value=1.6  Score=36.06  Aligned_cols=107  Identities=14%  Similarity=0.146  Sum_probs=70.6

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC---------CCHHHHHHHHHHHHHHHHhc
Q 043950          324 PLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC---------VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       324 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---------~~~~v~~~~~~~l~~l~~~~  394 (458)
                      .+++.+.+.....  ..+..|.-.....+....+.|++.||+..|.+.+..         .+......++.++..++...
T Consensus        70 ~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~  147 (187)
T PF06371_consen   70 WYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK  147 (187)
T ss_dssp             HHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH
T ss_pred             HHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH
Confidence            3444454432221  334444444444566778888888999999888762         34467777888888887543


Q ss_pred             hhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950          395 EAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY  445 (458)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  445 (458)
                      ..             ....+...+++..|...+.+++..++..+..+|..+
T Consensus       148 ~G-------------~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l  185 (187)
T PF06371_consen  148 YG-------------LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL  185 (187)
T ss_dssp             HH-------------HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred             HH-------------HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            32             366777889999999999999999999999988653

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=91.40  E-value=2  Score=33.56  Aligned_cols=74  Identities=11%  Similarity=0.021  Sum_probs=61.0

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC-CHH---HHHHHHHHHHHHHHhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV-DPK---IVTVCLEGLENILKVG  394 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~---v~~~~~~~l~~l~~~~  394 (458)
                      ++..|..-+.++++.++..|+..|-.++.++...+...+....++..|..++..+ ...   |+.+++..+.......
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            5667888888999999999999999999998888888888888899999988743 333   8889988888776655

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=91.26  E-value=31  Score=39.19  Aligned_cols=270  Identities=9%  Similarity=0.051  Sum_probs=144.8

Q ss_pred             CCHHHHHHHHHHHHHhhcCC---CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHH
Q 043950          121 PSDDVREQAVWALGNVAADS---PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA  197 (458)
Q Consensus       121 ~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~  197 (458)
                      ++..++..|+..|..++..-   ++....-.+...+.++...+.++.+.++++.++.++.++...........-..++..
T Consensus      1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076       1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred             cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence            46677788888887877422   111111223456778888887778889999999999988765422111122344444


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhccCChhhH-----HHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCC---h-
Q 043950          198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKI-----QVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGD---D-  267 (458)
Q Consensus       198 l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~---~-  267 (458)
                      +.......++.+...+..++..+....-...     ..+  ...+..+..+.+.. +..+-..|+..|++++..-   + 
T Consensus      1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076       1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence            4444456678888888888877663211100     011  12344444444433 3445556666665442100   0 


Q ss_pred             -----------------------hhHHHHH-----hcCChHH---HHHHhccCChhhHHHHHHHHHHHhhcC-----CHH
Q 043950          268 -----------------------FQTQCII-----NHGAVPC---LLALLIHNHKKSIKKVACWTISNITAG-----NRE  311 (458)
Q Consensus       268 -----------------------~~~~~~~-----~~~~~~~---l~~ll~~~~~~~v~~~a~~~l~nl~~~-----~~~  311 (458)
                                             .....+.     ....++.   |.++..++ +.+||..|..+|-.+...     +++
T Consensus      1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076       1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred             cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCHH
Confidence                                   0000000     0122333   33445555 899999999999887741     334


Q ss_pred             HHHHHHHcCChHHHHHHhccC-----------------------ChhhHHHHHHHHHHhhcCCCHHHHHHHH--HCCChH
Q 043950          312 QIQAVIDAGLIVPLVNVLQDA-----------------------EFDIKKEAALAIANATVRGTHEQIKYLV--REGCIK  366 (458)
Q Consensus       312 ~~~~l~~~~~~~~L~~ll~~~-----------------------~~~~~~~a~~~L~~l~~~~~~~~~~~l~--~~~~l~  366 (458)
                      ....++. +++-++++.+...                       +..+...+..+|.+++.--. .+...+-  =.+++.
T Consensus      1386 ~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft-~fFd~L~~~L~~~l~ 1463 (1780)
T PLN03076       1386 LWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV-KFYPTVNPLLKKVLM 1463 (1780)
T ss_pred             HHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            4444445 4555565555321                       01123334444444432111 1112211  125566


Q ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950          367 PLCDLLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       367 ~L~~ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      .|..++..+++.+-..+..+|.+++....
T Consensus      1464 ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076       1464 LLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence            66667778888888888899888876433

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.25  E-value=18  Score=36.55  Aligned_cols=188  Identities=13%  Similarity=0.091  Sum_probs=98.9

Q ss_pred             CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChh-hHHHHHHhC-------cHHHHHHHhCCCCccchhhHH
Q 043950          185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTND-KIQVVIEAG-------VCRRLVELLGHPSPSVLTPAL  256 (458)
Q Consensus       185 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~-------~i~~L~~ll~~~~~~~~~~a~  256 (458)
                      ..........+|.++.++..+..-+-.+|+.++-.+...... ....+-...       .+..|++.++.+...--+...
T Consensus       490 ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~Eneylm  569 (960)
T KOG1992|consen  490 QLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLM  569 (960)
T ss_pred             cCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHH
Confidence            445566678899999999999998999999888776633222 111111111       222333333444333333444


Q ss_pred             HHHhHhhcCChhhHHHHHh---cCChHHHHHHhccCChhhHHHHHHHHHHHhh---c-CCHHHHHHHHHcCChHHHHHHh
Q 043950          257 WTVGNIVMGDDFQTQCIIN---HGAVPCLLALLIHNHKKSIKKVACWTISNIT---A-GNREQIQAVIDAGLIVPLVNVL  329 (458)
Q Consensus       257 ~~l~~l~~~~~~~~~~~~~---~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~---~-~~~~~~~~l~~~~~~~~L~~ll  329 (458)
                      .++.++..-.++.......   .++.+.+...-+++.++..-.....+++-+.   + .++... ..++...+|.+...+
T Consensus       570 KaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v-s~~e~aL~p~fq~Il  648 (960)
T KOG1992|consen  570 KAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV-SSLEEALFPVFQTIL  648 (960)
T ss_pred             HHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHH
Confidence            5555544433333221111   1233334444455545544443333333332   2 333332 334445788888888


Q ss_pred             ccCChhhHHHHHHHHHHhhcCCCH---HH----HH-----HHH-HCCChHHHHhhcc
Q 043950          330 QDAEFDIKKEAALAIANATVRGTH---EQ----IK-----YLV-REGCIKPLCDLLL  373 (458)
Q Consensus       330 ~~~~~~~~~~a~~~L~~l~~~~~~---~~----~~-----~l~-~~~~l~~L~~ll~  373 (458)
                      ..+-.+..-.+...++-+++.+..   +.    ..     .+. ..|-++.++++++
T Consensus       649 ~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~  705 (960)
T KOG1992|consen  649 SEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ  705 (960)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence            877667777777777776654322   11    11     122 3578888888876

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=91.20  E-value=1  Score=34.72  Aligned_cols=74  Identities=9%  Similarity=0.008  Sum_probs=60.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHH-HHHHHHHHHHHHcC
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-LQYEAAWALTNIAS   96 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~-i~~~a~~~L~~l~~   96 (458)
                      .++..+.+.|+++++.+++.|+..|-.++...+.....++...+++..|.+++....... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            357778888889999999999999999888765556677778889999999998766434 88888888877765

Unpublished observations. Domain of unknown function.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.96  E-value=1.2  Score=34.53  Aligned_cols=74  Identities=8%  Similarity=0.001  Sum_probs=60.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHcC
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIAS   96 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~i~~~a~~~L~~l~~   96 (458)
                      .++..+.+.|++.++.+++.|+..|-.+...-+...-.++...+++..|++++..     ...+.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4577888889999999999999999998877656667788888999999999963     1237899999988887765

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=90.94  E-value=1.7  Score=33.56  Aligned_cols=74  Identities=16%  Similarity=0.105  Sum_probs=59.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHcC
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE--DYPQLQYEAAWALTNIAS   96 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~i~~~a~~~L~~l~~   96 (458)
                      +++..|.+.|+++++.++..|+..|-.+....+.....++....++..|++++...  ..+.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            35777888889999999999999999988876454566666668888899999763  337899999999988776

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=90.84  E-value=6.8  Score=39.74  Aligned_cols=342  Identities=14%  Similarity=0.077  Sum_probs=160.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH------hC
Q 043950           35 DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI------DH  108 (458)
Q Consensus        35 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~------~~  108 (458)
                      +|..+...+...++.++.+  ......+++.|++..|+..=.-   .+...-...||..+.. .......+.      -.
T Consensus       365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~  438 (1516)
T KOG1832|consen  365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH  438 (1516)
T ss_pred             ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence            4555667788888888776  4566677788888777665222   2233334445555555 222222221      12


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc-------c-----------ccHHHHH
Q 043950          109 GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE-------H-----------AKLSMLR  170 (458)
Q Consensus       109 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-------~-----------~~~~~~~  170 (458)
                      .++..-+.++......-+.++...++.-.... ..-+.+-....+..|+.++..       +           .+...-.
T Consensus       439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~fr-ail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~  517 (1516)
T KOG1832|consen  439 QVVKLAIELLDCSQDQARKNSALFFAAAFVFR-AILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF  517 (1516)
T ss_pred             HHHHHHHHHHhcchhhccchHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence            34555566665543333333322222111000 011222233455566555531       1           1223344


Q ss_pred             HHHHHHHHhhcCC-----CC-CChhhhhhhHHHHHHhhcCCC------hHHHHHHHHHHHHhccCCh-------hhHHHH
Q 043950          171 IATWTLSKLCKGK-----PQ-PPFDQVRPALPALAQLIHLDD------EEVLSDACWTLSYLSYGTN-------DKIQVV  231 (458)
Q Consensus       171 ~a~~~l~~l~~~~-----~~-~~~~~~~~~l~~l~~ll~~~~------~~~~~~~~~~l~~l~~~~~-------~~~~~~  231 (458)
                      ..|.++....+..     .. .......+..+..++-+...+      .+..+.+++-+-.+....+       ...+-+
T Consensus       518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf  597 (1516)
T KOG1832|consen  518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF  597 (1516)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence            4555555443321     00 000111122222222222111      2223334443333332222       123345


Q ss_pred             HHhCcHHHHHHHhCCC-C-------ccchhhHHHHHhHhhcCChhhHHHHHh--------cCChHHHHHHhccC---Chh
Q 043950          232 IEAGVCRRLVELLGHP-S-------PSVLTPALWTVGNIVMGDDFQTQCIIN--------HGAVPCLLALLIHN---HKK  292 (458)
Q Consensus       232 ~~~~~i~~L~~ll~~~-~-------~~~~~~a~~~l~~l~~~~~~~~~~~~~--------~~~~~~l~~ll~~~---~~~  292 (458)
                      ...+++..++.+...+ +       .+....|+.+|.-+..-.+ ....+..        ..++..++..-...   .++
T Consensus       598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~-iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp  676 (1516)
T KOG1832|consen  598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPD-IQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP  676 (1516)
T ss_pred             HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecch-HHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence            6667777777776542 2       2344556666655554333 3233321        12343333333221   278


Q ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-cCChhhHH--HHH-HHHHHhhcCCCHHHHHHHHHCCChHHH
Q 043950          293 SIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-DAEFDIKK--EAA-LAIANATVRGTHEQIKYLVREGCIKPL  368 (458)
Q Consensus       293 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~--~a~-~~L~~l~~~~~~~~~~~l~~~~~l~~L  368 (458)
                      +++..|..+|.|+....|+.+...+        .+..+ +++.....  ..- ..|.+...    .....+..++++..|
T Consensus       677 ei~~~AL~vIincVc~pp~~r~s~i--------~~v~S~~g~~r~~l~~~~ks~~le~~l~----~mw~~Vr~ndGIkiL  744 (1516)
T KOG1832|consen  677 EIIQPALNVIINCVCPPPTTRPSTI--------VAVGSQSGDRRIFLGAGTKSAKLEQVLR----QMWEAVRGNDGIKIL  744 (1516)
T ss_pred             HHHHHHHhhhheeecCCCCcchhhh--------hhccccCCCccccccCCCchHHHHHHHH----HHHHHHhcCccHHHH
Confidence            9999999999999986655433222        22221 11211110  000 01122111    223445567899999


Q ss_pred             HhhccCCC-----HHHHHHHHHHHHHHHHhchh
Q 043950          369 CDLLLCVD-----PKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       369 ~~ll~~~~-----~~v~~~~~~~l~~l~~~~~~  396 (458)
                      +.+++-.+     ..++..|+++|.-+.+..+-
T Consensus       745 l~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tV  777 (1516)
T KOG1832|consen  745 LKLLQYKNPPTTADCIRALACRVLLGLARDDTV  777 (1516)
T ss_pred             HHHHhccCCCCcHHHHHHHHHHHHhccccCcHH
Confidence            99998543     35888899999888876553

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=90.68  E-value=23  Score=36.68  Aligned_cols=127  Identities=16%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc
Q 043950          251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ  330 (458)
Q Consensus       251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~  330 (458)
                      ++..+.-+++++|-.++...+     ..+|.+++-|+......+|.+...+++.+|.+...    +. ...+|.+-.-|.
T Consensus       947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa----m~-d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen  947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA----MT-DRYIPMIAASLC 1016 (1529)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH----HH-HHhhHHHHHHhc
Confidence            333444455555543333222     24566666665553455666666666666643211    12 236888888899


Q ss_pred             cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCC--hHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Q 043950          331 DAEFDIKKEAALAIANATVRGTHEQIKYLVREGC--IKPLCDLLLCVDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~--l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ++++-+|..++..|.++...+      ++.-+|.  +..+..++ +.+++++.-+-..+..++...
T Consensus      1017 Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             CchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999998642      2222332  23333333 455667777766777666543

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=90.00  E-value=3.6  Score=32.07  Aligned_cols=74  Identities=11%  Similarity=0.030  Sum_probs=59.9

Q ss_pred             ChHHHHHHhc-cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHH-HHhhccC---CCHHHHHHHHHHHHHHHHhc
Q 043950          321 LIVPLVNVLQ-DAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKP-LCDLLLC---VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       321 ~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ++..+..-+. +.++.++..|+..|-.++.++...+...+...+++.. |..++..   .+..|+.+++.++.......
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f  117 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF  117 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence            4556666666 4588899999999999999999899889999999997 8998863   34588999999888887544

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=89.86  E-value=17  Score=33.84  Aligned_cols=146  Identities=13%  Similarity=0.038  Sum_probs=88.6

Q ss_pred             HHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhc----c-CChhhHHHHHHHHHHH
Q 043950          231 VIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI----H-NHKKSIKKVACWTISN  304 (458)
Q Consensus       231 ~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~----~-~~~~~v~~~a~~~l~n  304 (458)
                      +.+.+-.+.+-+-+... ...-|..|+..+..++...+.....++    ...+..++.    + ..+++-+..|...++.
T Consensus       206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            55566667776666643 345677888889888875544433332    223333333    1 2266788899999999


Q ss_pred             hhcCCHH------------HHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 043950          305 ITAGNRE------------QIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLL  372 (458)
Q Consensus       305 l~~~~~~------------~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll  372 (458)
                      ++.....            ++..+....++|.|. --.+..+-++..|++.+..+-..-+++....     +++.++..|
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L  355 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL  355 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence            9863211            345555666777666 2224467789999999988876655444333     688999999


Q ss_pred             cCCCHHHHHHHHHH
Q 043950          373 LCVDPKIVTVCLEG  386 (458)
Q Consensus       373 ~~~~~~v~~~~~~~  386 (458)
                      .+++.-|...|..+
T Consensus       356 ~~~~~vv~tyAA~~  369 (370)
T PF08506_consen  356 QSSSYVVHTYAAIA  369 (370)
T ss_dssp             TSS-HHHHHHHHHH
T ss_pred             CCCCcchhhhhhhh
Confidence            98888776665544

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.47  E-value=9.8  Score=30.66  Aligned_cols=117  Identities=16%  Similarity=0.178  Sum_probs=71.2

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCC-CCHHHHHHHHHHHHHhhc---C
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDH--GAVPIFVKLLAS-PSDDVREQAVWALGNVAA---D  139 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~---~  139 (458)
                      ..+..+..++++.+ +.-|-.++..+...+..++  .+.+.+.  ..+..++..+++ .++.+.+.++.++..+..   +
T Consensus        25 ~l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   25 KLVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            35667788888888 7888888888888877432  3334333  357888888887 456788888888888873   3


Q ss_pred             CCchhhHHhhhCCHHHHHHHhccc-ccHHHHHHHHHHHHHhhcCCCCC
Q 043950          140 SPGCRNLVLREEALIPLLAQLNEH-AKLSMLRIATWTLSKLCKGKPQP  186 (458)
Q Consensus       140 ~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~  186 (458)
                      .++....+.. ..++.++..+..- .+......++.++..+....|..
T Consensus       102 ~p~l~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt  148 (165)
T PF08167_consen  102 KPTLTREIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT  148 (165)
T ss_pred             CCchHHHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence            3443222222 2233333333211 11455666777777776654433

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=88.91  E-value=6.9  Score=38.15  Aligned_cols=218  Identities=11%  Similarity=-0.016  Sum_probs=118.7

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-----------CCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950          164 AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-----------LDDEEVLSDACWTLSYLSYGTNDKIQVVI  232 (458)
Q Consensus       164 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  232 (458)
                      ++.++...+-..|..+...      .....++..|..+..           ..++.++..++..|+.-....      -.
T Consensus       249 ~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~~  316 (501)
T PF13001_consen  249 SNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------TS  316 (501)
T ss_pred             CcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------hC
Confidence            3445666666666665543      112455555555554           235677777777776532100      01


Q ss_pred             HhCcHHHHHHHhCCC--CccchhhHHHHH---hHhhcCChhhHHHHHhcCChHHHHHHhc-------cCChhhHHHHHHH
Q 043950          233 EAGVCRRLVELLGHP--SPSVLTPALWTV---GNIVMGDDFQTQCIINHGAVPCLLALLI-------HNHKKSIKKVACW  300 (458)
Q Consensus       233 ~~~~i~~L~~ll~~~--~~~~~~~a~~~l---~~l~~~~~~~~~~~~~~~~~~~l~~ll~-------~~~~~~v~~~a~~  300 (458)
                      -..++..+..-+.++  +..++..++..+   ...........-..+...+...+...+.       ...+...|..+..
T Consensus       317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe  396 (501)
T PF13001_consen  317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE  396 (501)
T ss_pred             CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence            123344444555555  567777887777   5555444333222222233333333442       1126689999999


Q ss_pred             HHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHH-HHHHHCCChHHHHh-hccCCCHH
Q 043950          301 TISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQI-KYLVREGCIKPLCD-LLLCVDPK  378 (458)
Q Consensus       301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~l~~~~~l~~L~~-ll~~~~~~  378 (458)
                      +|+.++...+....  -+-+++..|++.|.+++++++..+-.||..++.......- ........+..+.. ........
T Consensus       397 ~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  474 (501)
T PF13001_consen  397 TLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRS  474 (501)
T ss_pred             HHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHH
Confidence            99999986554321  1245788899999888999999998888888653211000 00000111222222 22234455


Q ss_pred             HHHHHHHHHHHHHHhch
Q 043950          379 IVTVCLEGLENILKVGE  395 (458)
Q Consensus       379 v~~~~~~~l~~l~~~~~  395 (458)
                      ++..+++....++....
T Consensus       475 ~R~~avk~an~~fpf~d  491 (501)
T PF13001_consen  475 CRYAAVKYANACFPFSD  491 (501)
T ss_pred             HHHHHHHHHHHhCCccc
Confidence            77777777776665433

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=88.47  E-value=11  Score=33.23  Aligned_cols=159  Identities=18%  Similarity=0.191  Sum_probs=94.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCCC
Q 043950           68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG--AVPIFVKLLAS----PSDDVREQAVWALGNVAADSP  141 (458)
Q Consensus        68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~  141 (458)
                      ...+.+.+..=. ++-+.-++..++-++. .+.....+...+  +...+..++..    ..+..+-.++++++|+....+
T Consensus        65 ~~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~  142 (268)
T PF08324_consen   65 LILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP  142 (268)
T ss_dssp             HHHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc
Confidence            344455554432 2446667777776666 455555544332  24444444432    567888889999999987655


Q ss_pred             chhhHHhh-hC-CHHHHHHHhcccc---cHHHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhc--CCChHHHHH
Q 043950          142 GCRNLVLR-EE-ALIPLLAQLNEHA---KLSMLRIATWTLSKLCKGK--PQPPFDQVRPALPALAQLIH--LDDEEVLSD  212 (458)
Q Consensus       142 ~~~~~~~~-~~-~l~~l~~~l~~~~---~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~--~~~~~~~~~  212 (458)
                      . +..+.. .+ .+...+..+..+.   +..++..++..+.|++...  ..........++..+.+.+.  ..|++....
T Consensus       143 ~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  143 G-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             C-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred             c-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            4 444443 22 3334443332332   6778888888888887543  11123333456677777433  368999999


Q ss_pred             HHHHHHHhccCChhhHH
Q 043950          213 ACWTLSYLSYGTNDKIQ  229 (458)
Q Consensus       213 ~~~~l~~l~~~~~~~~~  229 (458)
                      ++.+++++...++...+
T Consensus       222 ~LvAlGtL~~~~~~~~~  238 (268)
T PF08324_consen  222 LLVALGTLLSSSDSAKQ  238 (268)
T ss_dssp             HHHHHHHHHCCSHHHHH
T ss_pred             HHHHHHHHhccChhHHH
Confidence            99999999966654444

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=88.30  E-value=9.2  Score=28.83  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=58.7

Q ss_pred             HHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHC-CChHHHHhhccCC----
Q 043950          301 TISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVRE-GCIKPLCDLLLCV----  375 (458)
Q Consensus       301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~----  375 (458)
                      =|++++..++.....     ++..|.+-|+..++.|+..++.+|.+++..++..+...+.+. ..+..+...-..+    
T Consensus        24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~   98 (122)
T cd03572          24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK   98 (122)
T ss_pred             HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence            344444444444333     556788888888999999999999999999988887776553 2333333332212    


Q ss_pred             ----CHHHHHHHHHHHHHHHHh
Q 043950          376 ----DPKIVTVCLEGLENILKV  393 (458)
Q Consensus       376 ----~~~v~~~~~~~l~~l~~~  393 (458)
                          ...|+..|-+++..++..
T Consensus        99 Gd~~~~~VR~~A~El~~~if~~  120 (122)
T cd03572          99 GDSLNEKVREEAQELIKAIFSY  120 (122)
T ss_pred             CcchhHHHHHHHHHHHHHHhcc
Confidence                345888888888877653

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=88.13  E-value=21  Score=36.28  Aligned_cols=157  Identities=17%  Similarity=0.177  Sum_probs=108.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .|..|+.+|.+.+..+...+-..+......++ +.       -++..|+...-+.+.    ..|+.+|..+-.  |..+ 
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~-~~-------~l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K-   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDR-EP-------WLVNGLVDYYLSTNS----QRALEILVGVQE--PHDK-   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccc-hH-------HHHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence            46788999999999988888888887766542 22       136777777655552    355566664432  3212 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                           .++..|-..+..  +..|-.++..|+.+....|..-..+.+...+..|++.|..+.+..+...|+.+|..|.-..
T Consensus        70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                 224556666653  4567779999999998888777778888999999999988899989899988888877655


Q ss_pred             CCCChhhhhhhHHHHHHhh
Q 043950          184 PQPPFDQVRPALPALAQLI  202 (458)
Q Consensus       184 ~~~~~~~~~~~l~~l~~ll  202 (458)
                      +.........++.....++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            4444444445555555555

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=87.26  E-value=13  Score=34.28  Aligned_cols=156  Identities=13%  Similarity=0.029  Sum_probs=94.8

Q ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----------CCChHHHHHHHHHHHHhcc
Q 043950          153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH----------LDDEEVLSDACWTLSYLSY  222 (458)
Q Consensus       153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----------~~~~~~~~~~~~~l~~l~~  222 (458)
                      -..++..+.+..-+..+..++.++.-|+++............++.+..+-.          ..|..+...++.||+|+.-
T Consensus        47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf  126 (532)
T KOG4464|consen   47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF  126 (532)
T ss_pred             HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence            345566664444345566677778888877644444444555555555443          2356889999999999998


Q ss_pred             CChhhHHHHHHhCcHHHHHHHhCCC-----CccchhhHHHHHhHhhcCChhh-HHHHHhcCChHHHHHHhccCC------
Q 043950          223 GTNDKIQVVIEAGVCRRLVELLGHP-----SPSVLTPALWTVGNIVMGDDFQ-TQCIINHGAVPCLLALLIHNH------  290 (458)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~l~~ll~~~~------  290 (458)
                      +++.......+......+.+.+...     ...+...-++.|.-+..-.... .+.+.+.++++.+-+++.++-      
T Consensus       127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~  206 (532)
T KOG4464|consen  127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI  206 (532)
T ss_pred             ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence            8887777677776666666555331     1122333344444444333343 344557889999998886421      


Q ss_pred             --------hhhHHHHHHHHHHHhhcC
Q 043950          291 --------KKSIKKVACWTISNITAG  308 (458)
Q Consensus       291 --------~~~v~~~a~~~l~nl~~~  308 (458)
                              +....-++..++.|+..+
T Consensus       207 n~~~l~pqe~n~a~EaLK~~FNvt~~  232 (532)
T KOG4464|consen  207 NVPPLNPQETNRACEALKVFFNVTCD  232 (532)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhheeec
Confidence                    223445777888888763

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=87.02  E-value=13  Score=29.03  Aligned_cols=79  Identities=19%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cCCChH---HHHHHH
Q 043950          364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SHDNNG---IREKAV  439 (458)
Q Consensus       364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~---v~~~a~  439 (458)
                      ++..|..-+.+.++.++..|+.++..+++....            .|...+....+++.|..+. .+....   |++++.
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~------------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l  110 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP------------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKIL  110 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH------------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence            467788888899999999999999999987543            3677777778889999874 344444   899999


Q ss_pred             HHHHHhcCCCCCCCC
Q 043950          440 KILETYWCGRVVGPQ  454 (458)
Q Consensus       440 ~~l~~~~~~~~~~~~  454 (458)
                      .++...-..-..+|.
T Consensus       111 ~ll~~W~~~f~~~~~  125 (140)
T PF00790_consen  111 ELLQEWAEAFKSDPE  125 (140)
T ss_dssp             HHHHHHHHHTTTSTT
T ss_pred             HHHHHHHHHHCCCCC
Confidence            888776443344443

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.98  E-value=38  Score=34.47  Aligned_cols=327  Identities=14%  Similarity=0.111  Sum_probs=172.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCC----hhhHHHHHhC
Q 043950           34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED-YPQLQYEAAWALTNIASGT----SMNTNVVIDH  108 (458)
Q Consensus        34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~----~~~~~~~~~~  108 (458)
                      ++||.++..|=++|......           .|..-.+++++..++ ++.+|..|+-.+.|....+    ++....+.+.
T Consensus        16 ~pdps~rk~aEr~L~~~e~q-----------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~   84 (960)
T KOG1992|consen   16 SPDPSVRKPAERALRSLEGQ-----------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEE   84 (960)
T ss_pred             CCCCccCchHHHHHHHhccC-----------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchh
Confidence            56788998888888887433           245556777776654 5788999999998887721    1111222221


Q ss_pred             --C-ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC-C
Q 043950          109 --G-AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-P  184 (458)
Q Consensus       109 --~-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~  184 (458)
                        . +-..++.++-+....++.+-..+++-++..+-.-+.  -  ..++.++..+ ++.|-.+......+-..+...- +
T Consensus        85 ~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kW--p--tLl~dL~~~l-s~~D~~~~~gVL~tahsiFkr~R~  159 (960)
T KOG1992|consen   85 DREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKW--P--TLLPDLVARL-SSGDFNVINGVLVTAHSIFKRYRP  159 (960)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhh--H--HHHHHHHhhc-cccchHHHHHHHHHHHHHHHhcCc
Confidence              1 224556666667788999999999999855422111  1  1466677776 4444433333333333333222 1


Q ss_pred             CCChh----hhhh-----------hHHHHHHhhc--CCChHHHHHHHH-------HHHHhccC-ChhhHHHHHHhCcHHH
Q 043950          185 QPPFD----QVRP-----------ALPALAQLIH--LDDEEVLSDACW-------TLSYLSYG-TNDKIQVVIEAGVCRR  239 (458)
Q Consensus       185 ~~~~~----~~~~-----------~l~~l~~ll~--~~~~~~~~~~~~-------~l~~l~~~-~~~~~~~~~~~~~i~~  239 (458)
                      .....    ....           ++.....+.+  .+|.........       ....+... -++..+.-.+ .++..
T Consensus       160 efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~-~wM~~  238 (960)
T KOG1992|consen  160 EFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMK-TWMGA  238 (960)
T ss_pred             ccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHH-HHHHH
Confidence            11111    1122           2222223332  233332222222       33333311 1122211111 35677


Q ss_pred             HHHHhCCCCc-------------cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChh-----hHHHHHHHH
Q 043950          240 LVELLGHPSP-------------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKK-----SIKKVACWT  301 (458)
Q Consensus       240 L~~ll~~~~~-------------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-----~v~~~a~~~  301 (458)
                      +.+++..+++             .++...|..+.-.+...++..+.++. .++.....+|.+. .+     .....|...
T Consensus       239 F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~-~fv~~~W~LL~~~-s~~~kyD~Lvs~Al~F  316 (960)
T KOG1992|consen  239 FHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLP-DFVTATWNLLVST-SPDTKYDYLVSKALQF  316 (960)
T ss_pred             HHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhc-CCCccHHHHHHHHHHH
Confidence            7777764332             34555666666666666666665442 4555566666554 22     233445556


Q ss_pred             HHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHH-
Q 043950          302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIV-  380 (458)
Q Consensus       302 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~-  380 (458)
                      |.+.+.. +.+...+...+++..+++...             +.|+....   .-..+.+.+.++.+-+-++..|.+.| 
T Consensus       317 Lt~V~~r-~~y~~~F~~~~vl~~i~e~Vv-------------lpN~~lR~---eDeElFED~pleYiRRDlEGsDvdTRR  379 (960)
T KOG1992|consen  317 LTSVSRR-PHYAELFEGENVLAQICEKVV-------------LPNLILRE---EDEELFEDNPLEYIRRDLEGSDVDTRR  379 (960)
T ss_pred             HHHHHhh-hhhHhhhcchHHHHHHHHhhc-------------ccccccch---hhHHHhccCHHHHHHHhcccCCcchhH
Confidence            6666542 222222333444444444332             34444322   12345677788888888988777664 


Q ss_pred             HHHHHHHHHHHHhchh
Q 043950          381 TVCLEGLENILKVGEA  396 (458)
Q Consensus       381 ~~~~~~l~~l~~~~~~  396 (458)
                      ..|++.+..+++..+.
T Consensus       380 R~a~dlvrgL~~~fe~  395 (960)
T KOG1992|consen  380 RAAIDLVRGLCKNFEG  395 (960)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            4588888888887654

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=86.80  E-value=52  Score=35.91  Aligned_cols=126  Identities=10%  Similarity=0.077  Sum_probs=78.6

Q ss_pred             cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhc
Q 043950          319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEK  398 (458)
Q Consensus       319 ~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~  398 (458)
                      .+++|.|-.-|.+++..+|..|...++.+.........  =.....+...+.-+.+...+|+..+++....++...+...
T Consensus       258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~  335 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA  335 (1266)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc--ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence            36899999999999999999999999999874321111  0112345555666666777788888887777776655433


Q ss_pred             ccCC----------------------CCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          399 NTGS----------------------TIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       399 ~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      +.-+                      +..+...+...+... .+..+...+.+....|+..|-.-+..+|.
T Consensus       336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            2200                      022233333333333 45555555666777788777776666655

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=86.77  E-value=36  Score=34.03  Aligned_cols=162  Identities=15%  Similarity=0.148  Sum_probs=92.5

Q ss_pred             hhhHHHHHHhhcCC----ChHHHHHHHHHHHHhcc----CChhhHHHHHHhCcHHHHHHHhC----CCCccchhhHHHHH
Q 043950          192 RPALPALAQLIHLD----DEEVLSDACWTLSYLSY----GTNDKIQVVIEAGVCRRLVELLG----HPSPSVLTPALWTV  259 (458)
Q Consensus       192 ~~~l~~l~~ll~~~----~~~~~~~~~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~~l  259 (458)
                      ...+..+..++.++    .+.++..++-+++.+..    ..+.... .+-..+++.+...+.    ..+...+...+.+|
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL  470 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL  470 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence            45566666666643    45666677777766652    1111101 111234555555543    34555677889999


Q ss_pred             hHhhcCChhhHHHHHhcCChHHHHHHhc--cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc--CChh
Q 043950          260 GNIVMGDDFQTQCIINHGAVPCLLALLI--HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD--AEFD  335 (458)
Q Consensus       260 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~  335 (458)
                      ||+..  +         ..++.+...+.  .+.+..+|..|+|++..++...+..        +-+.++.++.+  .+.+
T Consensus       471 GN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~E  531 (574)
T smart00638      471 GNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPE  531 (574)
T ss_pred             hccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChH
Confidence            99864  2         22344444444  1225689999999999998644443        44556666654  4788


Q ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHH
Q 043950          336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCL  384 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~  384 (458)
                      +|..|..+|...-  .+...         +..+...+. .++.+|...+.
T Consensus       532 vRiaA~~~lm~t~--P~~~~---------l~~ia~~l~~E~~~QV~sfv~  570 (574)
T smart00638      532 VRMAAVLVLMETK--PSVAL---------LQRIAELLNKEPNLQVASFVY  570 (574)
T ss_pred             HHHHHHHHHHhcC--CCHHH---------HHHHHHHHhhcCcHHHHHHhH
Confidence            9988877776652  22222         344555554 44566655443

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=86.61  E-value=13  Score=28.92  Aligned_cols=80  Identities=20%  Similarity=0.206  Sum_probs=57.2

Q ss_pred             ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHH-HHhhhcC---CChHHHHHH
Q 043950          364 CIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKK-IEGLKSH---DNNGIREKA  438 (458)
Q Consensus       364 ~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~---~~~~v~~~a  438 (458)
                      ++..|..-+. ++++.+...++.+|..+++.....            |...+..-++++. |..+...   .+.+|+.+.
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki  106 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV  106 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence            3555666555 568889999999999999875543            5677777778886 7777642   346899999


Q ss_pred             HHHHHHhcCCCCCCCCC
Q 043950          439 VKILETYWCGRVVGPQL  455 (458)
Q Consensus       439 ~~~l~~~~~~~~~~~~~  455 (458)
                      ..+++.....-..+|.|
T Consensus       107 l~li~~W~~~f~~~~~l  123 (141)
T cd03565         107 LALIQAWADAFRGSPDL  123 (141)
T ss_pred             HHHHHHHHHHhCCCccc
Confidence            99998875544445544

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=86.60  E-value=7.3  Score=44.79  Aligned_cols=269  Identities=14%  Similarity=0.144  Sum_probs=140.1

Q ss_pred             hhcCCCHHHHHHHHHHHHHHhcCCCC--ccHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950           31 GVWSDDNSLQLEATTQFRILLSIERS--PRIEDVI--QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI  106 (458)
Q Consensus        31 ~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~--~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  106 (458)
                      .+..++.+++..+...++.+......  +......  -..++..+..+-....++.++......+.      ........
T Consensus       489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~la  562 (2341)
T KOG0891|consen  489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLA  562 (2341)
T ss_pred             HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhc
Confidence            34467788888887666666543210  0000001  12233333333333333555554443333      22222344


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC
Q 043950          107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP  186 (458)
Q Consensus       107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~  186 (458)
                      ..+.+..+...+....-.+++.+...+++++..+|...-.......+ ....-+..+.-..+...+..-+..+....+..
T Consensus       563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l-~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~  641 (2341)
T KOG0891|consen  563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLL-ELLTELEFSGMARTKEESAKLLCELIISSPVL  641 (2341)
T ss_pred             CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHH-HHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence            44556667777777888889999999999988766321111110001 11111111111111111111111111111111


Q ss_pred             ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcC
Q 043950          187 PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMG  265 (458)
Q Consensus       187 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~  265 (458)
                      ....+...+..+...+...++.+...+..+++.++..........++ ..++.+.+.+.+ .+..-+..+.++++++.+.
T Consensus       642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~  720 (2341)
T KOG0891|consen  642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS  720 (2341)
T ss_pred             HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence            22223445566677777788888888899999988655433333344 455666666655 3455677889999999875


Q ss_pred             ChhhHHHHH-hcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          266 DDFQTQCII-NHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       266 ~~~~~~~~~-~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      ..-...... ..-++..+...+.......++.++...++++..
T Consensus       721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~  763 (2341)
T KOG0891|consen  721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA  763 (2341)
T ss_pred             cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence            433222222 223566666666666566778888888886654

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=86.20  E-value=13  Score=33.06  Aligned_cols=138  Identities=12%  Similarity=0.191  Sum_probs=74.1

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-HHHHhCCChHH----HHHhhC--------CCCHHHHHHHHHHH
Q 043950           67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT-NVVIDHGAVPI----FVKLLA--------SPSDDVREQAVWAL  133 (458)
Q Consensus        67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~----L~~ll~--------~~~~~~~~~a~~~L  133 (458)
                      ++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.    +...+.        ..+..+-..+.-++
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            6899999999998 8999999999999998444333 23555665443    333333        24456777777777


Q ss_pred             HHhhcC---C-CchhhHHhhhCCHHHHHHHhccccc---HHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC
Q 043950          134 GNVAAD---S-PGCRNLVLREEALIPLLAQLNEHAK---LSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLD  205 (458)
Q Consensus       134 ~~l~~~---~-~~~~~~~~~~~~l~~l~~~l~~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~  205 (458)
                      ..++..   . ...+......-.-..++..+....+   +.+....+..+..+...-........+.+++.+.+.+.+.
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            777532   1 1111111111111223333322222   5555555555555444322222233355555555555443

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=86.16  E-value=22  Score=31.65  Aligned_cols=118  Identities=19%  Similarity=0.211  Sum_probs=75.8

Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH-HHHHHcCChHHHHHHhc------------cCChhhHHHHHHH
Q 043950          277 GAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI-QAVIDAGLIVPLVNVLQ------------DAEFDIKKEAALA  343 (458)
Q Consensus       277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~~~~~~L~~ll~------------~~~~~~~~~a~~~  343 (458)
                      -++|.++.++++. ++.+|..++.++..+....+... ..+.+.|..+.+.+.+.            .+...+...+.-+
T Consensus       119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            4789999999998 99999999999999997433322 33556776665555442            3356677888888


Q ss_pred             HHHhhcC-------CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950          344 IANATVR-------GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       344 L~~l~~~-------~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      +..++..       ........++.+|++..+....+.+.+.++...++.+..++....
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG  256 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG  256 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence            8887442       112223334444444444433333457777777777777766533

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.48  E-value=3.2  Score=36.69  Aligned_cols=134  Identities=13%  Similarity=0.132  Sum_probs=77.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHc-C-CHHHHHHhhcCC----CCHHHHHHHHHHHHHHcCCChhhH-HHHH
Q 043950           34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQA-G-VVPRFVEFLMRE----DYPQLQYEAAWALTNIASGTSMNT-NVVI  106 (458)
Q Consensus        34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~-~i~~L~~ll~~~----~~~~i~~~a~~~L~~l~~~~~~~~-~~~~  106 (458)
                      +..+..++.+++.++|+...  ......+... + .+...+..+...    + ..++..++..+.|++......+ ..-.
T Consensus       121 ~~~~~~~ml~lR~l~NlF~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-kn~~~A~ATl~~Nlsv~~~~~~~~~~~  197 (268)
T PF08324_consen  121 SSPPANQMLALRLLANLFSH--PPGRQLLLSHFDSSILELLSSLLSSLLDSN-KNVRIALATLLLNLSVLLHKNRSDEEW  197 (268)
T ss_dssp             TSSHHHHHHHHHHHHHHTTS--CCCHHHHHCTHHTCHHHHCHCCCTTS-HHH-HHHHHHHHHHHHHHHHHHHHCTS-CCH
T ss_pred             CCcHHHHHHHHHHHHHhhCC--CccHHHHHhcccchHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence            35688999999999999775  3444444432 2 333333333333    4 7899999999999976211111 0001


Q ss_pred             hCCChHHHHHh-hCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHH
Q 043950          107 DHGAVPIFVKL-LAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLR  170 (458)
Q Consensus       107 ~~~~i~~L~~l-l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~  170 (458)
                      ....+..+... ... .+++...-++.+++++....+.........|+-..+-..-....++.++.
T Consensus       198 ~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~  263 (268)
T PF08324_consen  198 QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE  263 (268)
T ss_dssp             HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence            11235666663 333 68888889999999999666554444333333333333332334444444

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.07  E-value=2.5  Score=35.69  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHH-------cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH-HhC
Q 043950           37 NSLQLEATTQFRILLSIERSPRIEDVIQ-------AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVV-IDH  108 (458)
Q Consensus        37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~-~~~  108 (458)
                      -+-|..|+.+|+++.-.+  .+.+.+..       +.++..|++++....++-.|+-|+-.|.+++..++.....+ .+.
T Consensus       138 lSPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~  215 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK  215 (257)
T ss_pred             CCHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence            456888999999997653  33222222       23566777888777768899999999999999776655444 466


Q ss_pred             CChHHHHHhhCCC
Q 043950          109 GAVPIFVKLLASP  121 (458)
Q Consensus       109 ~~i~~L~~ll~~~  121 (458)
                      +.|..|+.++...
T Consensus       216 ~~i~~Li~FiE~a  228 (257)
T PF12031_consen  216 PCISHLIAFIEDA  228 (257)
T ss_pred             chHHHHHHHHHHH
Confidence            8899999999754

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=83.89  E-value=52  Score=33.30  Aligned_cols=197  Identities=13%  Similarity=0.069  Sum_probs=100.3

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcc---cccHHHHHHHHHHHHHhh----c
Q 043950          110 AVPIFVKLLASPSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNE---HAKLSMLRIATWTLSKLC----K  181 (458)
Q Consensus       110 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~~a~~~l~~l~----~  181 (458)
                      .+..+.+++.+....-.+ +...|..+.... ....+      .+..+..++..   ..++.+...++-+++.+.    .
T Consensus       396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            466677777663322222 334444444322 11112      34445555532   234556666665555543    3


Q ss_pred             CC------CCCChhhhhhhHHHHHHhh----cCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC---C
Q 043950          182 GK------PQPPFDQVRPALPALAQLI----HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP---S  248 (458)
Q Consensus       182 ~~------~~~~~~~~~~~l~~l~~ll----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~  248 (458)
                      ..      ..........+++.+...+    ...|.+.+..++.+|+|+-.           ...++.+...+...   .
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~  537 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVP  537 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccc
Confidence            31      0112222244444444444    45677888899999999852           13567777777765   5


Q ss_pred             ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHH
Q 043950          249 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVN  327 (458)
Q Consensus       249 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~  327 (458)
                      ..+|..|++++..++...+...        .+.++.++.+. .+.++|..|..+|...- .+..         .+..+..
T Consensus       538 ~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~~-P~~~---------~l~~i~~  599 (618)
T PF01347_consen  538 HFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRCN-PSPS---------VLQRIAQ  599 (618)
T ss_dssp             HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT----HH---------HHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhcC-CCHH---------HHHHHHH
Confidence            6788999999998876665443        44456666543 35688888877766531 1211         3445566


Q ss_pred             HhccC-ChhhHHHHHH
Q 043950          328 VLQDA-EFDIKKEAAL  342 (458)
Q Consensus       328 ll~~~-~~~~~~~a~~  342 (458)
                      .+..+ +..|......
T Consensus       600 ~l~~E~~~QV~sfv~S  615 (618)
T PF01347_consen  600 SLWNEPSNQVASFVYS  615 (618)
T ss_dssp             HHTT-S-HHHHHHHHH
T ss_pred             HHhhCchHHHHHHHHH
Confidence            66543 4555544433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=83.88  E-value=32  Score=30.82  Aligned_cols=105  Identities=12%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHhhcCCHHHH-----------------HH----HHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhhc
Q 043950          293 SIKKVACWTISNITAGNREQI-----------------QA----VIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATV  349 (458)
Q Consensus       293 ~v~~~a~~~l~nl~~~~~~~~-----------------~~----l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~  349 (458)
                      .+|.+-...+.+++.+.....                 ..    --+.|.+..+++.+..+  +...+-..+.|+-.+..
T Consensus        47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR  126 (303)
T PF12463_consen   47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR  126 (303)
T ss_pred             HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence            467777777887776321111                 00    01357788888888654  66778889999999999


Q ss_pred             CCCH-HHHHHHHHCCChHHHHhhccCC---CHHHHHHHHHHHHHHHHhchhh
Q 043950          350 RGTH-EQIKYLVREGCIKPLCDLLLCV---DPKIVTVCLEGLENILKVGEAE  397 (458)
Q Consensus       350 ~~~~-~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~  397 (458)
                      +.+. ....++.+.|+++.+++.+-++   +..+.....++|+.+++.....
T Consensus       127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~  178 (303)
T PF12463_consen  127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDA  178 (303)
T ss_pred             CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHH
Confidence            8877 4556788999999999976543   3468899999999999977654

Proteins in this family are typically between 399 and 797 amino acids in length.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=83.58  E-value=18  Score=33.22  Aligned_cols=219  Identities=18%  Similarity=0.121  Sum_probs=109.4

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc
Q 043950           63 IQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG  142 (458)
Q Consensus        63 ~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  142 (458)
                      +...++..|..++..+.++......+.++..-....    ..-+...++..+..-+.+..+.+|+.-+..++......+.
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            334567777888876554666666666666554321    0111123467777777777777898888888887651111


Q ss_pred             hhhHHhhhCCHHHHHHHhc---ccccHHHH---HHHHHHHHHhhcCC-CCCCh-hhhhh-----hHHH-H--HHhhcC-C
Q 043950          143 CRNLVLREEALIPLLAQLN---EHAKLSML---RIATWTLSKLCKGK-PQPPF-DQVRP-----ALPA-L--AQLIHL-D  205 (458)
Q Consensus       143 ~~~~~~~~~~l~~l~~~l~---~~~~~~~~---~~a~~~l~~l~~~~-~~~~~-~~~~~-----~l~~-l--~~ll~~-~  205 (458)
                      ....-.-...++.+++.+.   .++-+...   ..+..++..+.... ..... .....     -=|. +  -++... .
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~  174 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA  174 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence            1011111235666666663   12211111   11111211111111 00000 00000     0000 0  012222 3


Q ss_pred             ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC--CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHH
Q 043950          206 DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP--SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL  283 (458)
Q Consensus       206 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~  283 (458)
                      +++.....++++..+..........-.....-..++.++-++  .+.+|+.|+..+..+...++..    +...++..+.
T Consensus       175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~  250 (339)
T PF12074_consen  175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW  250 (339)
T ss_pred             CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence            455566666666666644332221111233556777888777  7899999999999998877764    2233556666


Q ss_pred             HHhccC
Q 043950          284 ALLIHN  289 (458)
Q Consensus       284 ~ll~~~  289 (458)
                      +.+...
T Consensus       251 ~~l~~~  256 (339)
T PF12074_consen  251 KWLSSS  256 (339)
T ss_pred             HHHHhc
Confidence            666543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []

Probab=83.40  E-value=11  Score=36.33  Aligned_cols=116  Identities=17%  Similarity=0.167  Sum_probs=73.0

Q ss_pred             cCChHHHHHHhccCChhhHHHHHHHHHHHhhc--CCHHHHHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHhhcCC-
Q 043950          276 HGAVPCLLALLIHNHKKSIKKVACWTISNITA--GNREQIQAVIDAGLIVPLVNVLQD-AEFDIKKEAALAIANATVRG-  351 (458)
Q Consensus       276 ~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-  351 (458)
                      .++++.+++.+..+   .+..-....++ .=.  .....++.+.+.++++.|++.|.. .+.+++.+|+..|+.++..+ 
T Consensus        20 ~~~v~~llkHI~~~---~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~   95 (475)
T PF04499_consen   20 PNFVDNLLKHIDTP---AIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR   95 (475)
T ss_pred             ccHHHHHHHhcCCc---HHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            46666666666544   22222222222 101  223445556678999999999974 47789999999988886532 


Q ss_pred             -----------CHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhch
Q 043950          352 -----------THEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       352 -----------~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                                 .......+.+...+..|++.+- .........++.++..+++...
T Consensus        96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknn  151 (475)
T PF04499_consen   96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNN  151 (475)
T ss_pred             ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc
Confidence                       1344566677777888877554 2335566677788888876553

This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.

>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised

Probab=82.69  E-value=12  Score=29.38  Aligned_cols=124  Identities=12%  Similarity=0.090  Sum_probs=85.7

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcC--CCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHH
Q 043950           98 TSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAAD--SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATW  174 (458)
Q Consensus        98 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~  174 (458)
                      +++.-+.+.+.+.+..+.++++. ....++.+.+.+++-+..+  ++..-..+...+.+..++..--+-.++++...-..
T Consensus        15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs   94 (149)
T PF09758_consen   15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS   94 (149)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence            45577788888999999999987 6677888888877766643  22233445667778888777656678889999999


Q ss_pred             HHHHhhcCCCCCChhh-------hhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950          175 TLSKLCKGKPQPPFDQ-------VRPALPALAQLIHLDDEEVLSDACWTLSYLS  221 (458)
Q Consensus       175 ~l~~l~~~~~~~~~~~-------~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  221 (458)
                      .|..++..-+......       .-++...-+++..++|+-++..+-..+.++.
T Consensus        95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~  148 (149)
T PF09758_consen   95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY  148 (149)
T ss_pred             HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence            9998886542221111       1334445567778889888888777766653

They contain a highly conserved FPL motif.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=82.52  E-value=54  Score=32.55  Aligned_cols=290  Identities=14%  Similarity=0.171  Sum_probs=142.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      ++..+=+.+-+++..+...|+-.+.-..++..++.-      -++..|...+++++ ..++..|+..|+-.-.+  ..++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~d------palALLsdyv~~~~-s~~ri~aIlGLglayaG--sq~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECD------PALALLSDYLQSSS-SIHRIGAILGLGLAYAG--SQRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeeccccccccC------HHHHHHHHhccCCC-ceeehHHhhhhHHhhcC--CchH
Confidence            466666777777777777776555544333222111      13445566667777 57888888888765443  2233


Q ss_pred             HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          104 VVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                      .+.     ..|..++.+.  ..++...|...|+.+..++.+  ..+ ....++.++..-.........+...-.|..+..
T Consensus       487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            322     2555666553  356777777777777654422  111 112344444433211122233333333333333


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC---ccchhhHHHH
Q 043950          182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS---PSVLTPALWT  258 (458)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~~~~~a~~~  258 (458)
                      ...        ..+.....-++.-...++..+-..+..++.......-.+ +.   ..+..+-....   +.-+..|+.-
T Consensus       559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~I-q~---q~ll~~cgE~~~~~e~~~~~avLg  626 (878)
T KOG2005|consen  559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKI-QS---QLLLSFCGEHDADLESEQELAVLG  626 (878)
T ss_pred             ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEe-ch---hhhhhhcCCCccchhhhccchhhh
Confidence            321        111112222221122222222112222211111110000 00   11111111111   1122234444


Q ss_pred             HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHH
Q 043950          259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKK  338 (458)
Q Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~  338 (458)
                      ++-++.+.+-..+.     .+..+-.++..+ ++.+|+..-.+++-++..+|..       .++..|-+.....|.++..
T Consensus       627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~  693 (878)
T KOG2005|consen  627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM  693 (878)
T ss_pred             hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence            44455444333222     355566777777 8888888888888887766542       4677788888888888888


Q ss_pred             HHHHHHHHhhcCCCHHH
Q 043950          339 EAALAIANATVRGTHEQ  355 (458)
Q Consensus       339 ~a~~~L~~l~~~~~~~~  355 (458)
                      +++.+++-+-.+.+...
T Consensus       694 naIfamGLiGAGTnNAR  710 (878)
T KOG2005|consen  694 NAIFAMGLIGAGTNNAR  710 (878)
T ss_pred             HHHHHhccccCCcchHH
Confidence            88888887766544433

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=82.38  E-value=7.1  Score=29.14  Aligned_cols=70  Identities=7%  Similarity=-0.000  Sum_probs=54.9

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh-----c-cCCCHHHHHHHHHHHHHH
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL-----L-LCVDPKIVTVCLEGLENI  390 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l-----l-~~~~~~v~~~~~~~l~~l  390 (458)
                      ++..|..-+.+.++.++..|+..|-.++.+++..+...+.+..++..++..     . ...+..|+.++..++...
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w  113 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW  113 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence            566677778888999999999999999999998988888887777666543     1 134678888888877654

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.33  E-value=72  Score=33.79  Aligned_cols=288  Identities=15%  Similarity=0.113  Sum_probs=155.5

Q ss_pred             hhccHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--
Q 043950           21 KLEILPAMVA-GVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG--   97 (458)
Q Consensus        21 ~~~~i~~l~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~--   97 (458)
                      +.+++..|-. .|++++.+.+...+..+.++-+.. .++-+..-+.--+|.|+.-+..-. ..+|...+.+|.--...  
T Consensus       464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvn  541 (2799)
T KOG1788|consen  464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVN  541 (2799)
T ss_pred             chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhc
Confidence            3344444332 256788888988888888886654 566665556667888877776554 46666665555322110  


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc-----ccHHHHHH
Q 043950           98 TSMNTNVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH-----AKLSMLRI  171 (458)
Q Consensus        98 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-----~~~~~~~~  171 (458)
                      .-..++       +-.|+-+|+.+ +..++...+.....+...+..+++.+.+.|.++.+...+.++     +|..    
T Consensus       542 cvPeqE-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy----  610 (2799)
T KOG1788|consen  542 CVPEQE-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY----  610 (2799)
T ss_pred             cCcHHH-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh----
Confidence            001111       33566677653 345566666666677676777888888999888887777532     2211    


Q ss_pred             HHHHHHHhhcCCC-CCChhhh---hhhHHHHHHhhcCCC--hHH------HHHHHHHHHHhccCChhhHHHHHHhCcHHH
Q 043950          172 ATWTLSKLCKGKP-QPPFDQV---RPALPALAQLIHLDD--EEV------LSDACWTLSYLSYGTNDKIQVVIEAGVCRR  239 (458)
Q Consensus       172 a~~~l~~l~~~~~-~~~~~~~---~~~l~~l~~ll~~~~--~~~------~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~  239 (458)
                        .........++ +..+...   ...+-.--.++.+..  ..+      ......++..+..++.++...+.+..++..
T Consensus       611 --sgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvkl  688 (2799)
T KOG1788|consen  611 --SGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKL  688 (2799)
T ss_pred             --hhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceE
Confidence              01111111111 1111100   111111111222211  111      112234666666777777777888888888


Q ss_pred             HHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-------Ch----hhHHHHHHHHHHHhhcC
Q 043950          240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-------HK----KSIKKVACWTISNITAG  308 (458)
Q Consensus       240 L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-------~~----~~v~~~a~~~l~nl~~~  308 (458)
                      ++.++-  +++-|...++.+..+....+.+..    ..-+-.+++.|+++       ++    ...+.....++..+...
T Consensus       689 ilpfli--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgv  762 (2799)
T KOG1788|consen  689 ILPFLI--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGV  762 (2799)
T ss_pred             EEEeee--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHcc
Confidence            888774  445677788888888766655322    11233344444442       01    23344455666666654


Q ss_pred             CHHHHHHHHHcCChHHHHHHh
Q 043950          309 NREQIQAVIDAGLIVPLVNVL  329 (458)
Q Consensus       309 ~~~~~~~l~~~~~~~~L~~ll  329 (458)
                      +......+-+.+.+..|...|
T Consensus       763 ngsaqrvFgeatGFslLlttL  783 (2799)
T KOG1788|consen  763 NGSAQRVFGEATGFSLLLTTL  783 (2799)
T ss_pred             CchheeehhccccHHHHHHHH
Confidence            434444555777777777665

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=81.79  E-value=26  Score=28.64  Aligned_cols=73  Identities=14%  Similarity=0.116  Sum_probs=50.9

Q ss_pred             CHHHHHHHhcccccHHHHHHHHHHHHHhhcC-CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950          152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN  225 (458)
Q Consensus       152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  225 (458)
                      .++.++.-+ ...+...+..|...+..+... ...........+++.+...|.+.|+++...++.+|..++...+
T Consensus        39 ~Lpif~dGL-~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~  112 (183)
T PF10274_consen   39 YLPIFFDGL-RETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD  112 (183)
T ss_pred             HHHHHHhhh-hccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            355566666 344444555666666666655 3444555567788888889999999999999999999965444

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=81.43  E-value=3.5  Score=34.91  Aligned_cols=79  Identities=23%  Similarity=0.286  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhCCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCc-hhhHHhhhCC
Q 043950           82 QLQYEAAWALTNIASGTSMNTNVVIDHGA-------VPIFVKLLAS-PSDDVREQAVWALGNVAADSPG-CRNLVLREEA  152 (458)
Q Consensus        82 ~i~~~a~~~L~~l~~~~~~~~~~~~~~~~-------i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~  152 (458)
                      .=|..|+.+|++++- .+.+.+.+...+-       +..|.+++.. .++..|+.|+..|.+++..++. ++....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            358889999999988 4566666655543       3455555554 7789999999999999977755 4466677888


Q ss_pred             HHHHHHHhc
Q 043950          153 LIPLLAQLN  161 (458)
Q Consensus       153 l~~l~~~l~  161 (458)
                      +..|+.++.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999984

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=81.36  E-value=47  Score=31.03  Aligned_cols=220  Identities=12%  Similarity=0.106  Sum_probs=124.4

Q ss_pred             cHHHHHHHHHHHHHhhcCC---CCCChhhhhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHH
Q 043950          165 KLSMLRIATWTLSKLCKGK---PQPPFDQVRPALPALAQLIHLD--DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRR  239 (458)
Q Consensus       165 ~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~  239 (458)
                      +..+..+|+.+++.+..+.   ..........++...+..+.++  +..+....++++..--- +..    +.....+..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f-~~~----~~~~~~~~~  133 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF-SPK----IMTSDRVER  133 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CCc----ccchhhHHH
Confidence            5678888999999888765   2222333344566666666433  45677777777765321 111    223333444


Q ss_pred             HHHHhCC-----CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc--CCHHH
Q 043950          240 LVELLGH-----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA--GNREQ  312 (458)
Q Consensus       240 L~~ll~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~  312 (458)
                      ++..+..     ++..+....+.++.++....+.....-. ...++.++..+-+. ...+|..|......+..  +....
T Consensus       134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~  211 (372)
T PF12231_consen  134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE  211 (372)
T ss_pred             HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence            4443322     4566778889999999876665433222 23777887777777 66777766555555442  22111


Q ss_pred             H-H---HHHH----cC-----ChHHHHHHhccCChhhHHHHHHHHHHhhcCCC-HHHHHHHHHCCChHHHHhhccCCCHH
Q 043950          313 I-Q---AVID----AG-----LIVPLVNVLQDAEFDIKKEAALAIANATVRGT-HEQIKYLVREGCIKPLCDLLLCVDPK  378 (458)
Q Consensus       313 ~-~---~l~~----~~-----~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~  378 (458)
                      . .   ...+    .+     +.+.+..++.+.+......-+|...-+..+.. .+.-..  -+..+.....++.++++.
T Consensus       212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~--~n~wL~v~e~cFn~~d~~  289 (372)
T PF12231_consen  212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEH--LNEWLKVPEKCFNSSDPQ  289 (372)
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHh--HhHHHHHHHHHhcCCCHH
Confidence            1 1   1222    12     23335556666344443344555544444332 111111  123466666688899999


Q ss_pred             HHHHHHHHHHHHHHh
Q 043950          379 IVTVCLEGLENILKV  393 (458)
Q Consensus       379 v~~~~~~~l~~l~~~  393 (458)
                      ++..|..+-..+...
T Consensus       290 ~k~~A~~aW~~liy~  304 (372)
T PF12231_consen  290 VKIQAFKAWRRLIYA  304 (372)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998888763

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=80.86  E-value=12  Score=34.23  Aligned_cols=72  Identities=8%  Similarity=0.044  Sum_probs=62.9

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHH
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILK  392 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~  392 (458)
                      .+..+.+-+...|+.|...|+..+..++.++...++..+...++...|..++. ...+.|.++.-.++....+
T Consensus        46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse  118 (462)
T KOG2199|consen   46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE  118 (462)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence            57788888999999999999999999999999899999999999999999998 6778888887777776665

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=80.65  E-value=25  Score=37.55  Aligned_cols=235  Identities=15%  Similarity=0.156  Sum_probs=128.0

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHh--------hcCCCCHHHHHHHHHHHHHH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEF--------LMREDYPQLQYEAAWALTNI   94 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l--------l~~~~~~~i~~~a~~~L~~l   94 (458)
                      +-++.|+..+-++..++|..++.+++.++............+.-++..+.-+        ..++-..-+++.++++|+.+
T Consensus        77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~  156 (1549)
T KOG0392|consen   77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY  156 (1549)
T ss_pred             HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence            4467788888899999999999999999876533333333332222222211        12111236888999999888


Q ss_pred             cCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh--hhCCHHHHHHHhcccccHHHHHHH
Q 043950           95 ASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL--REEALIPLLAQLNEHAKLSMLRIA  172 (458)
Q Consensus        95 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~~a  172 (458)
                      ..+..+..-    ...+..+.+++..+.-+++...+..+.....   ..++.+.  -..+++..+..+ .+.+.+++..+
T Consensus       157 l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~a  228 (1549)
T KOG0392|consen  157 LKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVA  228 (1549)
T ss_pred             HHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHH
Confidence            774222111    1236777777776655555544444332211   0111111  012344555555 56667788888


Q ss_pred             HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCh--HHHHHHHHHHHHhccCChhhHH----HHHHhCcHHHHHHHhCC
Q 043950          173 TWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDE--EVLSDACWTLSYLSYGTNDKIQ----VVIEAGVCRRLVELLGH  246 (458)
Q Consensus       173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~--~~~~~~~~~l~~l~~~~~~~~~----~~~~~~~i~~L~~ll~~  246 (458)
                      ..++.......+......+..++..+...+..-+.  .-.......+..++.... ...    .-.+.|+++.+..++.+
T Consensus       229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~e-vl~l~~~~n~~~~Lvp~~~p~l~~  307 (1549)
T KOG0392|consen  229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENE-VLDLFEQQNLEVGLVPRLWPFLRH  307 (1549)
T ss_pred             HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHH-HHHHHHHhhhhhccchhhHHHHHH
Confidence            88877766654333344445555555544432221  111112222223332221 111    11224788888888888


Q ss_pred             CCccchhhHHHHHhHhhcCC
Q 043950          247 PSPSVLTPALWTVGNIVMGD  266 (458)
Q Consensus       247 ~~~~~~~~a~~~l~~l~~~~  266 (458)
                      .=..++..++..+..+....
T Consensus       308 ~i~sv~~a~l~~l~~lle~~  327 (1549)
T KOG0392|consen  308 TISSVRRAALETLAMLLEAD  327 (1549)
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            77778888888888887644

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=80.22  E-value=71  Score=32.38  Aligned_cols=103  Identities=13%  Similarity=0.147  Sum_probs=70.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhH
Q 043950           67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNL  146 (458)
Q Consensus        67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  146 (458)
                      +|+.|..+..++- ++++..++..+..+....|+.-..     ++..++.-+..++..+...|...|.+|...+|..+-.
T Consensus       305 fievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V  378 (988)
T KOG2038|consen  305 FIEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV  378 (988)
T ss_pred             HHHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence            4555555555665 799999999999998877765543     3677888888888889999999999999999887655


Q ss_pred             HhhhCCHHHHHHHhc-ccccHHHHHHHHHHHHHhh
Q 043950          147 VLREEALIPLLAQLN-EHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       147 ~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~l~~l~  180 (458)
                      +     +..+-.++. .+.+.....+++-+|..+.
T Consensus       379 v-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~  408 (988)
T KOG2038|consen  379 V-----IDEIERLAFRPNVSERAHYYAVIFLNQMK  408 (988)
T ss_pred             h-----HHHHHHHHcccCccccceeehhhhhhhhH
Confidence            4     334444442 2233334444555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-120
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-120
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-118
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-118
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-118
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-117
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-117
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-117
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-117
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-100
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-100
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-100
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-100
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-100
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-100
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-100
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-100
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-100
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-100
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-100
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-100
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-100
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-100
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-100
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-98
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		3e-32
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		7e-28
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		3e-22
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		8e-28
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-25
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		9e-19
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-19
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		5e-06
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		5e-06
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		6e-06
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		6e-06
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		6e-06
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		6e-06
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		6e-06
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		6e-06
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		6e-06
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		6e-06
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		7e-06
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		7e-06
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		7e-06
3bct_A	470	The Armadillo Repeat Region From Murine Beta-Cateni		2e-05
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		3e-05
1oyz_A	280	X-Ray Structure Of Yiba_ecoli Northeast Structural		3e-04
3ifq_A	553	Interction Of Plakoglobin And Beta-Catenin With Des		7e-04

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/445 (75%), Positives = 380/445 (85%), Gaps = 4/445 (0%)
Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
           LQ+Q  +P++   +  +  KLE LPAM+ GV+SDDN+LQLEATTQFR LLSIERSP IE+
Sbjct: 55  LQAQAPVPASA--ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEE 112
Query: 62  VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
           VIQ+GVVPRFV+FL RED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL S 
Sbjct: 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 172
Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
           SDDVREQAVWALGNVA DSP CR+LVL   AL+PLLAQLNEH KLSMLR ATWTLS  C+
Sbjct: 173 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232
Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           GKPQP F+Q RPALPALA+LIH +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292
Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
           ELL HPSPSVL PAL TVGNIV GDD QTQCII+H A+PCLL+LL  N KKSIKK ACWT
Sbjct: 293 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352
Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
           ISNITAGN++QIQAVI+AG+I PLVN+LQ AEFDIKKEAA AI+NAT  G+H+QIKYLV 
Sbjct: 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 412
Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
           EGCIKPLCDLL+C D +IVTVCLEGLENILKVGE +K   +  GDVN ++++++E EG +
Sbjct: 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLE 470
Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
           KIE L+SHDNN I EKAVKILE YW
Sbjct: 471 KIENLQSHDNNEIYEKAVKILEAYW 495

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/422 (77%), Positives = 367/422 (86%), Gaps = 2/422 (0%)
Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
           LPAM+ GV+SDDN+LQLEATTQFR LLSIERSP IE+VIQ+GVVPRFV+FL RED+PQLQ
Sbjct: 38  LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQ 97
Query: 85  YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144
           +EAAWALTNIASGTS NT VVIDHGAVPIFVKLL S SDDVREQAVWALGNVA DSP CR
Sbjct: 98  FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 157
Query: 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL 204
           +LVL   AL+PLLAQLNEH KLSMLR ATWTLS  C+GKPQP F+Q RPALPALA+LIH 
Sbjct: 158 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS 217
Query: 205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264
           +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLVELL HPSPSVL PAL TVGNIV 
Sbjct: 218 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 277
Query: 265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVP 324
           GDD QTQCII+H A+PCLL+LL  N KKSIKK ACWTISNITAGN++QIQAVI+AG+I P
Sbjct: 278 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 337
Query: 325 LVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCL 384
           LVN+LQ AEFDIKKEAA AI+NAT  G+H+QIKYLV EGCIKPLCDLL+C D +IVTVCL
Sbjct: 338 LVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 397
Query: 385 EGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET 444
           EGLENILKVGE +K   +  GDVN ++++++E EG +KIE L+SHDNN I EKAVKILE 
Sbjct: 398 EGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 455
Query: 445 YW 446
           YW
Sbjct: 456 YW 457

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  429 bits (1103), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/425 (55%), Positives = 293/425 (68%), Gaps = 5/425 (1%)
Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMREDYPQ 82
           I   M+  ++S     QL AT +FR LLS E +P I++VI   GVV RFVEFL R++   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 83  LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
           LQ+E+AW LTNIASG S+ T +VI  GAVPIF++LL+S  +DV+EQAVWALGN+A DS  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP-FDQVRPALPALAQL 201
           CR+ VL    L PLL   ++  +L+M R A W LS LC+GK  PP F +V P L  L+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261
           + + D +VL+DACW LSYLS G NDKIQ VI+AGVCRRLVELL H    V++PAL  VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321
           IV GDD QTQ I+N  A+   L  L+ + K+SIKK ACWTISNITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVT 381
              L+++LQ AEF  +KEAA AI NAT  G+ EQIKYLV  GCIKPLCDLL  +D KIV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI 441
           V L GLENIL++GE E     T   +N Y  L+EE  G  KIE L+SH+N  I +KA  +
Sbjct: 380 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437
Query: 442 LETYW 446
           +E Y+
Sbjct: 438 IEHYF 442

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  429 bits (1103), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/425 (55%), Positives = 293/425 (68%), Gaps = 5/425 (1%)
Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMREDYPQ 82
           I   M+  ++S     QL AT +FR LLS E +P I++VI   GVV RFVEFL R++   
Sbjct: 18  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 77
Query: 83  LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
           LQ+E+AW LTNIASG S+ T +VI  GAVPIF++LL+S  +DV+EQAVWALGN+A DS  
Sbjct: 78  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP-FDQVRPALPALAQL 201
           CR+ VL    L PLL   ++  +L+M R A W LS LC+GK  PP F +V P L  L+ L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261
           + + D +VL+DACW LSYLS G NDKIQ VI+AGVCRRLVELL H    V++PAL  VGN
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321
           IV GDD QTQ I+N  A+   L  L+ + K+SIKK ACWTISNITAGNR QIQ VIDA +
Sbjct: 258 IVTGDDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 316
Query: 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVT 381
              L+++LQ AEF  +KEAA AI NAT  G+ EQIKYLV  GCIKPLCDLL  +D KIV 
Sbjct: 317 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 376
Query: 382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI 441
           V L GLENIL++GE E     T   +N Y  L+EE  G  KIE L+SH+N  I +KA  +
Sbjct: 377 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 434
Query: 442 LETYW 446
           +E Y+
Sbjct: 435 IEHYF 439

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  423 bits (1088), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/426 (55%), Positives = 298/426 (69%), Gaps = 9/426 (2%)
Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
           LP M   + SDD   QL AT +FR +LS E  P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 89  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 147
Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
           Q EAAWALTNIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVA DS   
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
           R+ VL+  A+ P+L   N + K S++R ATWTLS LC+G KPQP +  V  ALP LA+LI
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           +  D E L DACW +SYLS G  + IQ VI+  + +RLVELL H S  V TPAL  VGNI
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G+D QTQ +IN G +P  L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 327 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
            PLV +L+ AE+  KKEA  AI+NA+  G    + I+YLV +GCIKPLCDLL   D +I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
            V L+ LENILK+GEA+K       ++N+ A  +E+  G +KI   + ++N+ I EKA K
Sbjct: 446 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503
Query: 441 ILETYW 446
           I+ETY+
Sbjct: 504 IIETYF 509

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/426 (55%), Positives = 298/426 (69%), Gaps = 9/426 (2%)
Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
           LP M   + SDD   QL AT +FR +LS E  P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
           Q EAAWALTNIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVA DS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
           R+ VL+  A+ P+L   N + K S++R ATWTLS LC+G KPQP +  V  ALP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           +  D E L DACW +SYLS G  + IQ VI+  + +RLVELL H S  V TPAL  VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G+D QTQ +IN G +P  L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
            PLV +L+ AE+  KKEA  AI+NA+  G    + I+YLV +GCIKPLCDLL   D +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
            V L+ LENILK+GEA+K       ++N+ A  +E+  G +KI   + ++N+ I EKA K
Sbjct: 358 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 441 ILETYW 446
           I+ETY+
Sbjct: 416 IIETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  421 bits (1082), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/426 (55%), Positives = 298/426 (69%), Gaps = 9/426 (2%)
Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
           LP M   + SDD   QL AT +FR +LS E  P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
           Q EAAWALTNIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVA DS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
           R+ VL+  A+ P+L   N + K S++R ATWTLS LC+G KPQP +  V  ALP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           +  D E L DACW +SYLS G  + IQ VI+  + +RLVELL H S  V TPAL  VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G+D QTQ +IN G +P  L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
            PLV +L+ AE+  KKEA  AI+NA+  G    + I+YLV +GCIKPLCDLL   D +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
            V L+ LENI+K+GEA+K       ++N+ A  +E+  G +KI   + ++N+ I EKA K
Sbjct: 358 EVTLDALENIIKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 441 ILETYW 446
           I+ETY+
Sbjct: 416 IIETYF 421

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/426 (55%), Positives = 297/426 (69%), Gaps = 9/426 (2%)
Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
           LP M   + SDD   QL AT +FR +LS E  P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
           Q EAAWALTNIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVA DS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
           R+ VL+  A+ P+L   N + K S++R ATWTLS LC+G KPQP +  V  ALP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           +  D E L DACW +SYLS G  + IQ VI+  + +RLVELL H S  V TPAL  VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G+D QTQ +IN G +P  L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
            PLV +L+ AE   KKEA  AI+NA+  G    + I+YLV +GCIKPLCDLL   D +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
            V L+ LENILK+GEA+K       ++N+ A  +E+  G +KI   + ++N+ I EKA K
Sbjct: 359 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 441 ILETYW 446
           I+ETY+
Sbjct: 417 IIETYF 422

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/426 (55%), Positives = 297/426 (69%), Gaps = 9/426 (2%)
Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
           LP M   + SDD   QL AT +FR +LS E  P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
           Q EAAWALTNIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVA DS   
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
           R+ VL+  A+ P+L   N + K S++R ATWTLS LC+G KPQP +  V  ALP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           +  D E L DACW +SYLS G  + IQ VI+  + +RLVELL H S  V TPAL  VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G+D QTQ +IN G +P  L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
            PLV +L+ AE   KKEA  AI+NA+  G    + I+YLV +GCIKPLCDLL   D +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
            V L+ LENILK+GEA+K       ++N+ A  +E+  G +KI   + ++N+ I EKA K
Sbjct: 360 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 441 ILETYW 446
           I+ETY+
Sbjct: 418 IIETYF 423

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/426 (55%), Positives = 297/426 (69%), Gaps = 9/426 (2%)
Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
           LP M   + SDD   QL AT +FR +LS E  P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
           Q EAAWALTNIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVA DS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
           R+ VL+  A+ P+L   N + K S++R ATWTLS LC+G KPQP +  V  ALP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           +  D E L DACW +SYLS G  + IQ VI+  + +RLVELL H S  V TPAL  VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G+D QTQ +IN G +P  L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
            PLV +L+ AE   KKEA  AI+NA+  G    + I+YLV +GCIKPLCDLL   D +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
            V L+ LENILK+GEA+K       ++N+ A  +E+  G +KI   + ++N+ I EKA K
Sbjct: 359 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 441 ILETYW 446
           I+ETY+
Sbjct: 417 IIETYF 422

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/426 (55%), Positives = 297/426 (69%), Gaps = 9/426 (2%)
Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
           LP M   + SDD   QL AT +FR +LS E  P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
           Q EAAWALTNIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNVA DS   
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
           R+ VL+  A+ P+L   N + K S++R ATWTLS LC+G KPQP +  V  ALP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           +  D E L DACW +SYLS G  + IQ VI+  + +RLVELL H S  V TPAL  VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G+D QTQ +IN G +P  L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
            PLV +L+ AE   KKEA  AI+NA+  G    + I+YLV +GCIKPLCDLL   D +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
            V L+ LENILK+GEA+K       ++N+ A  +E+  G +KI   + ++N+ I EKA K
Sbjct: 360 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 441 ILETYW 446
           I+ETY+
Sbjct: 418 IIETYF 423

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 443 ETYWC 447
           E Y+ 
Sbjct: 474 EKYFS 478

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 443 ETYWC 447
           E Y+ 
Sbjct: 474 EKYFS 478

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 407 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 459
Query: 443 ETYWC 447
           E Y+ 
Sbjct: 460 EKYFS 464

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 443 ETYWC 447
           E Y+ 
Sbjct: 474 EKYFS 478

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 38  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 98  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 397 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 449
Query: 443 ETYW 446
           E Y+
Sbjct: 450 EKYF 453

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 377 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
Query: 443 ETYWC 447
           E Y+ 
Sbjct: 430 EKYFS 434

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 443 ETYW 446
           E Y+
Sbjct: 419 EKYF 422

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 443 ETYW 446
           E Y+
Sbjct: 423 EKYF 426

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 443 ETYW 446
           E Y+
Sbjct: 424 EKYF 427

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 443 ETYWC 447
           E Y+ 
Sbjct: 424 EKYFS 428

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 443 ETYW 446
           E Y+
Sbjct: 423 EKYF 426

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 443 ETYW 446
           E Y+
Sbjct: 424 EKYF 427

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 443 ETYW 446
           E Y+
Sbjct: 419 EKYF 422

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 405 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 457
Query: 443 ETYW 446
           E Y+
Sbjct: 458 EKYF 461

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/425 (46%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S +   QL+AT   R LLS E+ P I+++I+AG++P+FV FL R D   +Q+E+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R+LV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 148 LREEALIPLLAQLNEHAKLSM----LRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L      S+    LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H DD EVL+D CW +SYL+ G N++I +V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV+VL  A+F  +KEA  A+ N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L++H+N  + + ++ ++
Sbjct: 372 ILDAISNIFQAAEK-------LGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 443 ETYWC 447
           E Y+ 
Sbjct: 425 EKYFS 429

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  356 bits (914), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 193/425 (45%), Positives = 273/425 (64%), Gaps = 13/425 (3%)
Query: 28  MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
           +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q+E+
Sbjct: 81  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 88  AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
           AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A      R+LV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
           ++  A+ PLLA L            LR  TWTLS LC+ K P PP D V   LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +GNI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
           V G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             LV VL  A+F  +K AA AI N T  GT EQI YLV  G I+PL +LL   D KI+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++ ++
Sbjct: 440 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492
Query: 443 ETYWC 447
           E Y+ 
Sbjct: 493 EKYFS 497

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  136 bits (342), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 15/249 (6%)
Query: 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP 254
           LP + Q ++ DD +    A    S +    N++IQ VI+AG    LV+LL  P+  +L  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ 314
           ALW + NI  G + Q Q +I+ GA+P L+ LL   +++ I + A W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC 374
           AVIDAG +  LV +L      I +EA  A++N    G +EQI+ ++  G +  L  LL  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 375 VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGI 434
            + +I+   L  L NI   G             N+  + V+E    +K+E L+SH+N  I
Sbjct: 192 PNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEKI 238
Query: 435 REKAVKILE 443
           +++A + LE
Sbjct: 239 QKEAQEALE 247

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Query: 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP 254
           LP + Q ++  D++ L  A   LS ++ G N++IQ VI+AG    LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ 314
           ALW + NI  G + Q Q +I+ GA+P L+ LL   +++ I + A W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC 374
           AVIDAG +  LV +L      I +EA  A++N    G +EQ + +   G ++ L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 375 VDPKIVTVCLEGLENI 390
            + KI     E LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 15/205 (7%)
Query: 239 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVA 298
           ++V+ L  P    L  AL  +  I  G + Q Q +I+ GA+P L+ LL   +++ I + A
Sbjct: 16  QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEA 74
Query: 299 CWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKY 358
            W +SNI +G  EQIQAVIDAG +  LV +L      I +EA  A++N    G +EQI+ 
Sbjct: 75  LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQIQA 133
Query: 359 LVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE 418
           ++  G +  L  LL   + +I+   L  L NI   G             N+  + V+E  
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKEAG 180
Query: 419 GFKKIEGLKSHDNNGIREKAVKILE 443
             +K+E L+SH+N  I+++A + LE
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  121 bits (304), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 111/197 (56%), Gaps = 4/197 (2%)
Query: 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP 254
           LP + Q ++  D++ L  A   LS ++ G N++IQ VI+AG    LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ 314
           ALW + NI  G + Q Q +I+ GA+P L+ LL   +++ I + A W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC 374
           AVIDAG +  LV +L      I +EA  A++N    G +EQ K  V+E   +P  + L  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQ-KQAVKEAGAEPALEQLQS 190
Query: 375 V-DPKIVTVCLEGLENI 390
             + KI     E LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 194 ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253
           ALPAL QL+   +E++L +A W LS ++ G N++IQ VI+AG    LV+LL  P+  +L 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI 313
            ALW + NI  G + Q Q +I+ GA+P L+ LL   +++ I + A W +SNI +G  EQ 
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAI 344
           QAV +AG +  L  +       I+KEA  A+
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321
           I+   + Q Q +I+ GA+P L+ LL   +++ I + A W +SNI +G  EQIQAVIDAG 
Sbjct: 39  ILSDGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGA 97
Query: 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVT 381
           +  LV +L      I +EA  A++N    G +EQI+ ++  G +  L  LL   + +I+ 
Sbjct: 98  LPALVQLLSSPNEQILQEALWALSN-IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI 441
             L  L NI   G             N+  + V+E    +K+E L+SH+N  I+++A + 
Sbjct: 157 EALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 203
Query: 442 LE 443
           LE
Sbjct: 204 LE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 9/246 (3%)
Query: 151 EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA--LPALAQLIHLDDEE 208
           E L+ LL   +   +    R     L+++  G P      +  A  +  L +L+   D E
Sbjct: 5   EKLVKLLTSTDSETQKEAAR----DLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSE 59
Query: 209 VLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDF 268
           V  +A   L+ ++ G ++ I+ +++AG    LV+LL      V   A   + NI  G D 
Sbjct: 60  VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119
Query: 269 QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNV 328
             + I++ G V  L+ LL     + ++K A   ++NI +G  E I+A++DAG +  LV +
Sbjct: 120 AIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178
Query: 329 LQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLE 388
           L   + +++KEAA A+AN    G    IK +V  G ++ L  LL   D ++       LE
Sbjct: 179 LTSTDSEVQKEAARALAN-IASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237
Query: 389 NILKVG 394
           NI   G
Sbjct: 238 NIKSGG 243

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 82  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 140
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 141 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 200
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 201 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 256
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 257 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 313
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 314 PAICALRHLTSR 325

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 95  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 153
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 154 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 213
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 214 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 269
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 270 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 326
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 327 PAICALRHLTSR 338

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 95  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 153
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 154 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 213
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 214 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 269
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 270 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 326
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 327 PAICALRHLTSR 338

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 98  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 156
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 157 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 216
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 217 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 272
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 273 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 329
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 330 PAICALRHLTSR 341

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 97  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 155
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 216 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 271
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 272 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 329 PAICALRHLTSR 340

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 82  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 140
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 141 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 200
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 201 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 256
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 257 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 313
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 314 PAICALRHLTSR 325

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 99  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 157
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 158 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 217
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 218 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 273
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 274 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 330
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 331 PAICALRHLTSR 342

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 86  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 144
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 145 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 204
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 205 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 260
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 261 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 317
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 318 PAICALRHLTSR 329

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 101 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 159
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 160 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 219
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 220 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 275
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 276 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 332
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 333 PAICALRHLTSR 344

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 100 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 158
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 159 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 218
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 219 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 274
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 275 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 331
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 332 PAICALRHLTSR 343

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 84  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 142
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 143 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 202
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 203 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 258
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 259 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 315
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 316 PAICALRHLTSR 327

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 99  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 157
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 158 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 217
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 218 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 273
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 274 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 330
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 331 PAICALRHLTSR 342

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK+L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 94  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 152
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 153 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 213 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 268
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 269 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 325
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 326 PAICALRHLTSR 337

>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 470

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 101/254 (39%), Gaps = 18/254 (7%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  VK L SP D V   A+  L N+     G +  V     L   +A LN+  
Sbjct: 39  IFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLNK-T 97
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWT----LSYL 220
            +  L I T  L  L  G  +     +    P    L+++          WT    L  L
Sbjct: 98  NVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIXRTYTYEKLLWTTSRVLKVL 155
Query: 221 SYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVP 280
           S  +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G + 
Sbjct: 156 SVCSSNK-PAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGXEGLLG 211
Query: 281 CLLALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDI 336
            L+ LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI
Sbjct: 212 TLVQLL---GSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDI 268
Query: 337 KKEAALAIANATVR 350
            + A  A+ + T R
Sbjct: 269 TEPAICALRHLTSR 282

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 104/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  V +L SP D V   A+  L N+     G +  V     L  ++A LN+  
Sbjct: 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 288
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
            +  L I T  L  L  G  +     +    P AL  ++     E++L      L  LS 
Sbjct: 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
            +++K   ++EAG  + L   L  PS  ++   LWT+ N+    D  T+     G +  L
Sbjct: 349 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 404
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
           + LL       I  V C    +SN+T  N +    V   G I  LV  +  A    DI +
Sbjct: 405 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 461
Query: 339 EAALAIANATVR 350
            A  A+ + T R
Sbjct: 462 PAICALRHLTSR 473

>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural Genomics Consortium Target Et31 Length = 280

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 82  QLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141
           Q Q  A    TN+   T+   +V+ D   +P+ + LL  P+ DVR  A +A+     D+ 
Sbjct: 132 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 191
Query: 142 GCRNLVLREEALIPLLAQLNEHAKLSML-----RIATWTLSKLCKG-KPQPPFDQV---- 191
             R      +  +  L   NE  ++  +     R     LS LC   K    +D +    
Sbjct: 192 DIR------DCFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAA 245
Query: 192 -----RPALPAL-AQLIHLDDEEVLSDA 213
                +  LP L   L   DD E+++ A
Sbjct: 246 GELGDKTLLPVLDTXLYKFDDNEIITSA 273

>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal Cadherins Length = 553

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 16/253 (6%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
           +   G +P  V++L+SP + V   A+  L N+     G +  V   + L  ++  LN++ 
Sbjct: 99  IFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNN 158
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLI-HLDDEEVLSDACWTLSYLSY 222
               L I T  L  L  G  +     +    P AL Q++ +   E++L      L  LS 
Sbjct: 159 P-KFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSV 217
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
             ++K   ++EAG  + L + L   SP ++   LWT+ N+    D  T+       +  +
Sbjct: 218 CPSNK-PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNL---SDVATK----QEGLESV 269
Query: 283 LALLIHN---HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIK 337
           L +L++       ++   A  T+SN+T  N +    V     +  L++ +  A  + DI 
Sbjct: 270 LKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDIT 329
Query: 338 KEAALAIANATVR 350
           + A  A+ + T R
Sbjct: 330 EPAVCALRHLTSR 342

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	458
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-172
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-46
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-46
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-35
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-165
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-162
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-43
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-40
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-100
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-66
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-62
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-48
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-23
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-17
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-73
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-66
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-60
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-49
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-83
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-68
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-58
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-38
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-13
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-82
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-81
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-57
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-51
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-26
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-18
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-07
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-77
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-58
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-49
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-17
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-09
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-66
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-54
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-54
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-25
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-53
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-49
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-48
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-32
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-51
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-42
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-31
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-19
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-37
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-32
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-31
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-25
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-17
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-06
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-32
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-20
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-10
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-19
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	8e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	8e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	7e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	6e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	7e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-06
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	2e-06
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	2e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	5e-05
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	2e-05

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  491 bits (1265), Expect = e-172
 Identities = 238/425 (56%), Positives = 293/425 (68%), Gaps = 5/425 (1%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQ-AGVVPRFVEFLMREDYPQ 82
           I   M+  ++S     QL AT +FR LLS E +P I++VI   GVV RFVEFL R++   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 83  LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
           LQ+E+AW LTNIASG S+ T +VI  GAVPIF++LL+S  +DV+EQAVWALGN+A DS  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQL 201
           CR+ VL    L PLL   ++  +L+M R A W LS LC+GK P P F +V P L  L+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261
           + + D +VL+DACW LSYLS G NDKIQ VI+AGVCRRLVELL H    V++PAL  VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321
           IV GDD QTQ I+N  A+  LL LL  + K+SIKK ACWTISNITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVT 381
              L+++LQ AEF  +KEAA AI NAT  G+ EQIKYLV  GCIKPLCDLL  +D KIV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI 441
           V L GLENIL++GE E         +N Y  L+EE  G  KIE L+SH+N  I +KA  +
Sbjct: 380 VALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437

Query: 442 LETYW 446
           +E Y+
Sbjct: 438 IEHYF 442

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  165 bits (420), Expect = 2e-46
 Identities = 60/356 (16%), Positives = 135/356 (37%), Gaps = 21/356 (5%)

Query: 93  NIASGTSMNTNVVI--DHGAVPIFVKLLASPSDDVREQAVWALGNVA--ADSPGCRNLVL 148
            +    +   N+ +          ++++ S S + +  A      +     +P    ++ 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 149 REEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRP-ALPALAQLIHLDDE 207
               +   +  L      ++   + W L+ +  G        ++  A+P   +L+  + E
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 208 EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP-SVLTPALWTVGNIVMGD 266
           +V   A W L  ++  +      V++  +   L++L    +  ++   A+W + N+  G 
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 267 DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLV 326
               +       +  +L+ L+      +   ACW +S ++ G  ++IQAVIDAG+   LV
Sbjct: 182 SPPPEFAKVSPCLN-VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240

Query: 327 NVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEG 386
            +L   ++ +   A  A+ N  V G   Q + ++    ++ L  LL      I       
Sbjct: 241 ELLMHNDYKVVSPALRAVGNI-VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299

Query: 387 LENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
           + NI            T G+  Q   +++ +  F  +  +        R++A   +
Sbjct: 300 ISNI------------TAGNRAQIQTVIDAN-IFPALISILQTAEFRTRKEAAWAI 342

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  165 bits (419), Expect = 2e-46
 Identities = 61/314 (19%), Positives = 133/314 (42%), Gaps = 19/314 (6%)

Query: 134 GNVAADSPGCRNL-VLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVR 192
           G +        N+ +     +   + ++           AT    KL   +P PP D+V 
Sbjct: 1   GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60

Query: 193 PALPALAQLIHL----DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS 248
                +A+ +      ++  +  ++ W L+ ++ G + + ++VI+AG     +ELL    
Sbjct: 61  STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120

Query: 249 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG 308
             V   A+W +GNI          +++   +P LL L    ++ ++ + A W +SN+  G
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180

Query: 309 NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPL 368
                +    +  +  L  +L  ++ D+  +A  A++  +  G +++I+ ++  G  + L
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS-DGPNDKIQAVIDAGVCRRL 239

Query: 369 CDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS 428
            +LL+  D K+V+  L  + NI+             GD  Q  +++      + +  L S
Sbjct: 240 VELLMHNDYKVVSPALRAVGNIVT------------GDDIQ-TQVILNCSALQSLLHLLS 286

Query: 429 HDNNGIREKAVKIL 442
                I+++A   +
Sbjct: 287 SPKESIKKEACWTI 300

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  135 bits (341), Expect = 3e-35
 Identities = 52/251 (20%), Positives = 102/251 (40%), Gaps = 16/251 (6%)

Query: 14  PSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVE 73
           P          L  +   ++  D  +  +A       LS   + +I+ VI AGV  R VE
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSY-LSDGPNDKIQAVIDAGVCRRLVE 241

Query: 74  FLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWAL 133
            LM  D  ++   A  A+ NI +G  + T V+++  A+   + LL+SP + ++++A W +
Sbjct: 242 LLMHND-YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

Query: 134 GNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRP 193
            N+ A +      V+ +  + P L  + + A+    + A W ++    G        +  
Sbjct: 301 SNITAGNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359

Query: 194 A--LPALAQLIHLDDEEVLSDACWTLSYL-----------SYGTNDKIQVVIEAGVCRRL 240
              +  L  L+ + D +++  A   L  +             G N    ++ EA    ++
Sbjct: 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKI 419

Query: 241 VELLGHPSPSV 251
             L  H +  +
Sbjct: 420 EFLQSHENQEI 430

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  476 bits (1225), Expect = e-165
 Identities = 235/450 (52%), Positives = 298/450 (66%), Gaps = 8/450 (1%)

Query: 1   DLQSQRFLPSAPRPSLNLQTKL-EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRI 59
              S     S+        ++L + LP M   + SDD   QL AT +FR +LS E  P I
Sbjct: 64  GADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPI 123

Query: 60  EDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA 119
           + VIQAGVVPR VEF+       LQ EAAWALTNIASGTS  T VV+D  AVP+F++LL 
Sbjct: 124 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 183

Query: 120 SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179
           + S +V+EQA+WALGNVA DS   R+ VL+  A+ P+L   N + K S++R ATWTLS L
Sbjct: 184 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNL 242

Query: 180 CKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR 238
           C+GK PQP +  V  ALP LA+LI+  D E L DACW +SYLS G  + IQ VI+  + +
Sbjct: 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302

Query: 239 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVA 298
           RLVELL H S  V TPAL  VGNIV G+D QTQ +IN G +P L  LL    K++IKK A
Sbjct: 303 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS-PKENIKKEA 361

Query: 299 CWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQI 356
           CWTISNITAGN EQIQAVIDA LI PLV +L+ AE+  KKEA  AI+NA+  G    + I
Sbjct: 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421

Query: 357 KYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE 416
           +YLV +GCIKPLCDLL   D +I+ V L+ LENILK+GEA+K       ++N+ A  +E+
Sbjct: 422 RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL--NINENADFIEK 479

Query: 417 DEGFKKIEGLKSHDNNGIREKAVKILETYW 446
             G +KI   + ++N+ I EKA KI+ETY+
Sbjct: 480 AGGMEKIFNCQQNENDKIYEKAYKIIETYF 509

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  466 bits (1201), Expect = e-162
 Identities = 197/442 (44%), Positives = 279/442 (63%), Gaps = 13/442 (2%)

Query: 10  SAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVP 69
           +      N  T    +  +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P
Sbjct: 44  AMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 103

Query: 70  RFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQA 129
           +FV FL + D   +Q+E+AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQA
Sbjct: 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163

Query: 130 VWALGNVAADSPGCRNLVLREEALIPLLAQLNEH----AKLSMLRIATWTLSKLCKGK-P 184
           VWALGN+A D    R+LV++  A+ PLLA L            LR  TWTLS LC+ K P
Sbjct: 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 223

Query: 185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL 244
            PP D V   LP L +L+H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LL
Sbjct: 224 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283

Query: 245 GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN 304
           G     ++TPAL  +GNIV G D QTQ +I+ GA+    +LL  N K +I+K A WT+SN
Sbjct: 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSN 342

Query: 305 ITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGC 364
           ITAG ++QIQ V++ GL+  LV VL  A+F  +KEAA AI N T  GT EQI YLV  G 
Sbjct: 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402

Query: 365 IKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIE 424
           I+PL +LL   D KI+ V L+ + NI +  E        +G+  + + ++EE  G  KIE
Sbjct: 403 IEPLMNLLSAKDTKIIQVILDAISNIFQAAEK-------LGETEKLSIMIEECGGLDKIE 455

Query: 425 GLKSHDNNGIREKAVKILETYW 446
            L+ H+N  + + ++ ++E Y+
Sbjct: 456 ALQRHENESVYKASLNLIEKYF 477

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  157 bits (399), Expect = 5e-43
 Identities = 77/363 (21%), Positives = 140/363 (38%), Gaps = 22/363 (6%)

Query: 93  NIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA-DSPGCRNLVLREE 151
           +  +   + +N    + +V   VK + S + + + QA  A   + + +     + ++R  
Sbjct: 41  DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100

Query: 152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV-RPALPALAQLIHLDDEEVL 210
            +   ++ L +     +   + W L+ +  G  +     V   A+PA   L+      + 
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 211 SDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP-----SVLTPALWTVGNIVMG 265
             A W L  ++   +    +VI+ G    L+ LL  P         L    WT+ N+   
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPL 325
            +           +P L+ LL HN  + +   +CW IS +T G  E+I+ V+  G++  L
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPE-VLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 326 VNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE 385
           V +L   E  I   A  AI N  V GT EQ + ++  G +     LL      I      
Sbjct: 280 VKLLGATELPIVTPALRAIGNI-VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338

Query: 386 GLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY 445
            + NI            T G  +Q  + V        + G+ S  +   +++A   +  Y
Sbjct: 339 TMSNI------------TAGRQDQ-IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385

Query: 446 WCG 448
             G
Sbjct: 386 TSG 388

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  150 bits (381), Expect = 1e-40
 Identities = 63/308 (20%), Positives = 127/308 (41%), Gaps = 15/308 (4%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRIL----LSIERSPRIEDVIQAGVVPRFVEFLMRED 79
            +  ++A +   D S       +        L   ++P         ++P  V  L+  +
Sbjct: 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR-LLHHN 244

Query: 80  YPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
            P++  ++ WA++ +  G +    +V+  G VP  VKLL +    +   A+ A+GN+   
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304

Query: 140 SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP-QPPFDQVRPALPAL 198
           +      V+   AL  +   L  + K ++ + ATWT+S +  G+  Q         +P L
Sbjct: 305 TDEQTQKVIDAGAL-AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 363

Query: 199 AQLIHLDDEEVLSDACWTLSYL-SYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257
             ++   D +   +A W ++   S GT ++I  ++  G+   L+ LL      ++   L 
Sbjct: 364 VGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILD 423

Query: 258 TVGNI------VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE 311
            + NI      +   +  +  I   G +  + AL  H ++ S+ K +   I    +   E
Sbjct: 424 AISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE-SVYKASLNLIEKYFSVEEE 482

Query: 312 QIQAVIDA 319
           + Q V+  
Sbjct: 483 EDQNVVPE 490

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  142 bits (359), Expect = 2e-37
 Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 11/275 (4%)

Query: 8   LPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGV 67
           L     P+  L    +ILP +V  +  +D  +  ++       L+   + RIE V++ GV
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS-YLTDGPNERIEMVVKKGV 275

Query: 68  VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVRE 127
           VP+ V+ L   +   +   A  A+ NI +GT   T  VID GA+ +F  LL +P  ++++
Sbjct: 276 VPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 334

Query: 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP 187
           +A W + N+ A        V+    L+P L  +   A     + A W ++    G     
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393

Query: 188 FDQVR--PALPALAQLIHLDDEEVLSDACWTLSYL------SYGTNDKIQVVIEAGVCRR 239
              +     +  L  L+   D +++      +S +         T     ++ E G   +
Sbjct: 394 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 453

Query: 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII 274
           +  L  H + SV   +L  +      ++ + Q ++
Sbjct: 454 IEALQRHENESVYKASLNLIEKYFSVEEEEDQNVV 488

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  313 bits (803), Expect = e-100
 Identities = 66/432 (15%), Positives = 136/432 (31%), Gaps = 18/432 (4%)

Query: 23  EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ 82
           +++ A+V  + + ++      T      LS  R   +  + ++G +P  V+ L       
Sbjct: 56  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA-IFKSGGIPALVKMLGSPV-DS 113

Query: 83  LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
           + + A   L N+          V   G +   V LL   +          L  +A  +  
Sbjct: 114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173

Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLI 202
            + ++L       L+  +  +    +L   +  L  L       P       + AL   +
Sbjct: 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 233

Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
               + ++ +  WTL  LS     +       G+   LV+LLG    +V+T A   + N+
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNRE---QIQAVID 318
              +      +   G +  L+  ++    ++ I + A   + ++T+ ++E      AV  
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK 378
              +  +V +L         +A + +              L  +G I  L  LL+     
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQD 409

Query: 379 IVTVCLEGLENILKVGEAEK--------NTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD 430
                  G      V                  +        ++           L    
Sbjct: 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 469

Query: 431 NNGIREKAVKIL 442
              I+  A  +L
Sbjct: 470 IENIQRVAAGVL 481

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  222 bits (568), Expect = 4e-66
 Identities = 83/386 (21%), Positives = 139/386 (36%), Gaps = 18/386 (4%)

Query: 16  LNLQTKLEI----LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRF 71
           +N Q   E+    +P +   +  +D  +  +A      L   E S     +    +V   
Sbjct: 3   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI-MRSPQMVSAI 61

Query: 72  VEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVW 131
           V  +   +  +     A  L N++         +   G +P  VK+L SP D V   A+ 
Sbjct: 62  VRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 120

Query: 132 ALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV 191
            L N+     G +  V R    +  +  L     +  L I T  L  L  G  +     +
Sbjct: 121 TLHNLLLHQEGAKMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179

Query: 192 RP-ALPALAQLI-HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP 249
                 AL  ++     E++L      L  LS  +++K   ++EAG  + L   L  PS 
Sbjct: 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQ 238

Query: 250 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN 309
            ++   LWT+ N+    D  T+     G +  L+ LL  +    +   A   +SN+T  N
Sbjct: 239 RLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNN 294

Query: 310 REQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATVRGTH--EQIKYLVREGCI 365
            +    V   G I  LV  +  A    DI + A  A+ + T R          +     +
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 354

Query: 366 KPLCDLLLCVDPKIVTVCLEGLENIL 391
             +  LL       +     GL   L
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNL 380

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  211 bits (539), Expect = 6e-62
 Identities = 59/391 (15%), Positives = 139/391 (35%), Gaps = 23/391 (5%)

Query: 57  PRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116
            + +  +    +P   + L  ED   +  +AA  +  ++   +    ++     V   V+
Sbjct: 5   YQDDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 117 LLASPSD-DVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWT 175
            + + +D +        L N+ +        + +   +  L+  L      S+L  A  T
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITT 121

Query: 176 LSKLCKGKPQPPFDQVRP--ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIE 233
           L  L   +       VR    L  +  L++  + + L+     L  L+YG  +   +++ 
Sbjct: 122 LHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 180

Query: 234 AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKS 293
           +G  + LV ++   +   L      V  ++         I+  G +  L   L     + 
Sbjct: 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQR 239

Query: 294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH 353
           + +   WT+ N++    +Q       GL+  LV +L   + ++   AA  ++N T    +
Sbjct: 240 LVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNY 295

Query: 354 EQIKYLVREGCIKPLCDLLL--CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYA 411
           +    + + G I+ L   +L       I    +  L ++    +  +   + +       
Sbjct: 296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 355

Query: 412 RLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
            +V+          L    +  + +  V ++
Sbjct: 356 VVVKL---------LHPPSHWPLIKATVGLI 377

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  174 bits (443), Expect = 2e-48
 Identities = 63/379 (16%), Positives = 118/379 (31%), Gaps = 34/379 (8%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQL 83
              A+V  + +      L  T++   +LS+  S +   +++AG +      L      +L
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA-IVEAGGMQALGLHLTDPS-QRL 240

Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
                W L N++      T      G +   V+LL S   +V   A   L N+  ++   
Sbjct: 241 VQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 297

Query: 144 RNLVLREEALIPLLAQL-NEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRP----ALPAL 198
           + +V +   +  L+  +     +  +   A   L  L     +    Q        LP +
Sbjct: 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 357

Query: 199 AQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258
            +L+H      L  A   L             + E G   RLV+LL              
Sbjct: 358 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 417

Query: 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID 318
                  +  + + I+                        C    +I A +      +  
Sbjct: 418 GTQQQFVEGVRMEEIVEG----------------------CTGALHILARDVHNRIVIRG 455

Query: 319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK 378
              I   V +L     +I++ AA  +         E  + +  EG   PL +LL   +  
Sbjct: 456 LNTIPLFVQLLYSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEG 513

Query: 379 IVTVCLEGLENILKVGEAE 397
           + T     L  + +    +
Sbjct: 514 VATYAAAVLFRMSEDKPQD 532

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  144 bits (364), Expect = 1e-37
 Identities = 62/329 (18%), Positives = 107/329 (32%), Gaps = 35/329 (10%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRIL--LSIERSPRIEDVIQAGVVPRFVEFL-MREDY 80
           +L  +V  + SDD ++   A     IL  L+         V Q G +   V  +    D 
Sbjct: 264 LLGTLVQLLGSDDINVVTCAA---GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 320

Query: 81  PQLQYEAAWALTNIASG---TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 137
             +   A  AL ++ S      M  N V  H  +P+ VKLL  PS     +A   L    
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380

Query: 138 ADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197
           A  P     +  + A IP L QL   A     R  +                        
Sbjct: 381 ALCPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSM-------------------GGTQ 420

Query: 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257
              +  +  EE++      L  L+   +++I +          V+LL  P  ++   A  
Sbjct: 421 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR-GLNTIPLFVQLLYSPIENIQRVAAG 479

Query: 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI 317
            +  +    +   + I   GA   L  LL   ++  +   A   +  ++    +  +  +
Sbjct: 480 VLCELAQDKEAA-EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMSEDKPQDYKKRL 537

Query: 318 DAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
              L   L    +       + A L +  
Sbjct: 538 SVELTSSL---FRTEPMAWNETADLGLDI 563

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  100 bits (251), Expect = 7e-23
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 16/219 (7%)

Query: 225 NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA 284
           N +    +       L +LL      V+  A   V  +   +  +   + +   V  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 285 LLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAI 344
            + + +     +    T+ N+ + +RE + A+  +G I  LV +L      +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 345 ANATVRGTHEQIKYLVRE-GCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGST 403
            N  +    E  K  VR  G ++ +  LL   + K + +  + L+ +    +  K     
Sbjct: 123 HNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL---I 177

Query: 404 IGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
           I        LV           ++++    +     ++L
Sbjct: 178 ILASGGPQALV---------NIMRTYTYEKLLWTTSRVL 207

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 84.2 bits (208), Expect = 2e-17
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 29/223 (13%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQL 83
            LP +V  +    +   ++AT      L++        + + G +PR V+ L+R      
Sbjct: 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAH-QDT 410

Query: 84  QYEAAWALTNIASGTSM---------------------NTNVVIDHGAVPIFVKLLASPS 122
           Q   +   T       +                     N  V+     +P+FV+LL SP 
Sbjct: 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 470

Query: 123 DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182
           ++++  A   L  +A D      +    E     L +L       +   A   L ++ + 
Sbjct: 471 ENIQRVAAGVLCELAQDKEAAEAIE--AEGATAPLTELLHSRNEGVATYAAAVLFRMSED 528

Query: 183 KPQPPFDQVRP-ALPALAQLIHLDDEEVLSDACWTLSYLSYGT 224
           KPQ   D  +  ++   + L   +       A   L   + G 
Sbjct: 529 KPQ---DYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGE 568

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  302 bits (775), Expect = 1e-97
 Identities = 66/431 (15%), Positives = 135/431 (31%), Gaps = 18/431 (4%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQL 83
           ++ A+V  + + ++      T      LS  R   +  + ++G +P  V+ L       +
Sbjct: 60  MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA-IFKSGGIPALVKMLGSPV-DSV 117

Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
            + A   L N+          V   G +   V LL   +          L  +A  +   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH 203
           + ++L       L+  +  +    +L   +  L  L       P       + AL   + 
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237

Query: 204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIV 263
              + ++ +  WTL  LS     +       G+   LV+LLG    +V+T A   + N+ 
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 264 MGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNRE---QIQAVIDA 319
             +      +   G +  L+  ++    ++ I + A   + ++T+ ++E      AV   
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354

Query: 320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI 379
             +  +V +L         +A + +              L  +G I  L  LL+      
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 380 VTVCLEGLENILKVGEAEKNTG--------STIGDVNQYARLVEEDEGFKKIEGLKSHDN 431
                 G      V                  +        ++           L     
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 473

Query: 432 NGIREKAVKIL 442
             I+  A  +L
Sbjct: 474 ENIQRVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  238 bits (610), Expect = 3e-73
 Identities = 87/420 (20%), Positives = 148/420 (35%), Gaps = 27/420 (6%)

Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
           +P +   +  +D  +  +A      L   E S     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI-MRSPQMVSAIVRTMQNTNDVETA 77

Query: 85  YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144
              A  L N++         +   G +P  VK+L SP D V   A+  L N+     G +
Sbjct: 78  RCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRP-ALPALAQLI- 202
             V     L  ++A LN    +  L I T  L  L  G  +     +      AL  ++ 
Sbjct: 137 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
               E++L      L  LS  +++K   ++EAG  + L   L  PS  ++   LWT+ N+
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
               D  T+     G +  L+ LL  +    +   A   +SN+T  N +    V   G I
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVGGI 310

Query: 323 VPLVNVLQDA--EFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPK 378
             LV  +  A    DI + A  A+ + T R          +     +  +  LL      
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370

Query: 379 IVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKA 438
            +     GL   L +  A              A L E+     ++  L    +   + + 
Sbjct: 371 PLIKATVGLIRNLALCPANH------------APLREQG-AIPRLVQLLVRAHQDTQRRT 417

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  221 bits (564), Expect = 2e-66
 Identities = 71/443 (16%), Positives = 138/443 (31%), Gaps = 45/443 (10%)

Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
           +PA+V  + S  +S+   A T    LL  +   ++  V  AG + + V  L+ +   +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA-VRLAGGLQKMVA-LLNKTNVKFL 160

Query: 85  YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144
                 L  +A G   +  +++  G     V ++ + + +        +  V +     +
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220

Query: 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL 204
             ++    +  L   L       +++   WTL  L     +   + +   L  L QL+  
Sbjct: 221 PAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS 277

Query: 205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL--GHPSPSVLTPALWTVGNI 262
           DD  V++ A   LS L+        +V + G    LV  +        +  PA+  + ++
Sbjct: 278 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337

Query: 263 VMGDDF---QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDA 319
                        +  H  +P ++ LL H         A   +    A        + + 
Sbjct: 338 TSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLREQ 396

Query: 320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRG--------------------THEQIKYL 359
           G I  LV +L  A  D ++  ++                                    +
Sbjct: 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 456

Query: 360 VREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEG 419
                I     LL      I  V    L  + +  E               A  +E +  
Sbjct: 457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAIEAEGA 502

Query: 420 FKKIEGLKSHDNNGIREKAVKIL 442
              +  L    N G+   A  +L
Sbjct: 503 TAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  204 bits (520), Expect = 4e-60
 Identities = 61/353 (17%), Positives = 116/353 (32%), Gaps = 19/353 (5%)

Query: 90  ALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR 149
           A+ N+ +      +  +   A+P   KLL      V  +A   +  ++        ++  
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 150 EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEV 209
            + +  ++  +     +   R    TL  L   +           +PAL +++    + V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 210 LSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 269
           L  A  TL  L          V  AG  +++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL 329
              I+  G    L+ ++     + +       +  + +       A+++AG +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 330 QDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLEN 389
            D    + +     + N     +    K    EG +  L  LL   D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 390 ILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
           +       K     +  V     LV           L++ D   I E A+  L
Sbjct: 293 LTCNNYKNKM---MVCQVGGIEALVR--------TVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  176 bits (447), Expect = 1e-49
 Identities = 62/372 (16%), Positives = 117/372 (31%), Gaps = 34/372 (9%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQL 83
              A+V  + +      L  T++   +LS+  S +   +++AG +       + +   +L
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL-HLTDPSQRL 243

Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
                W L N++      T      G +   V+LL S   +V   A   L N+  ++   
Sbjct: 244 VQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

Query: 144 RNLVLREEALIPLLAQL-NEHAKLSMLRIATWTLSKLCKGKPQPPFDQVR----PALPAL 198
           + +V +   +  L+  +     +  +   A   L  L     +    Q        LP +
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360

Query: 199 AQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258
            +L+H      L  A   L             + E G   RLV+LL              
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420

Query: 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID 318
                  +  + + I+                        C    +I A +      +  
Sbjct: 421 GTQQQFVEGVRMEEIVEG----------------------CTGALHILARDVHNRIVIRG 458

Query: 319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK 378
              I   V +L     +I++ AA  +         E  + +  EG   PL +LL   +  
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEG 516

Query: 379 IVTVCLEGLENI 390
           + T     L  +
Sbjct: 517 VATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  124 bits (313), Expect = 4e-31
 Identities = 58/289 (20%), Positives = 98/289 (33%), Gaps = 32/289 (11%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRIL--LSIERSPRIEDVIQAGVVPRFVEFL-MREDY 80
           +L  +V  + SDD ++   A     IL  L+         V Q G +   V  +    D 
Sbjct: 267 LLGTLVQLLGSDDINVVTCAA---GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 323

Query: 81  PQLQYEAAWALTNIASGTS---MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 137
             +   A  AL ++ S      M  N V  H  +P+ VKLL  PS     +A   L    
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383

Query: 138 ADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197
           A  P     +  + A IP L QL   A     R  +   ++    +              
Sbjct: 384 ALCPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV------------ 430

Query: 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257
                    EE++      L  L+   +++I +          V+LL  P  ++   A  
Sbjct: 431 -------RMEEIVEGCTGALHILARDVHNRIVIR-GLNTIPLFVQLLYSPIENIQRVAAG 482

Query: 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT 306
            +  +    +   + I   GA   L  LL   ++  +   A   +  ++
Sbjct: 483 VLCELAQDKEAA-EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMS 529

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  272 bits (696), Expect = 1e-83
 Identities = 65/431 (15%), Positives = 135/431 (31%), Gaps = 18/431 (4%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQL 83
           ++ A+V  + + ++      T+     LS  R   +  + ++G +P  V  L       +
Sbjct: 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA-IFKSGGIPALVNML-GSPVDSV 250

Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
            + A   L N+          V   G +   V LL   +          L  +A  +   
Sbjct: 251 LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 310

Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH 203
           + ++L       L+  +  +    +L   +  L  L       P       + AL   + 
Sbjct: 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 370

Query: 204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIV 263
              + ++ +  WTL  LS     +       G+   LV+LLG    +V+T A   + N+ 
Sbjct: 371 DPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427

Query: 264 MGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNRE---QIQAVIDA 319
             +      +   G +  L+  ++    ++ I + A   + ++T+ +++      AV   
Sbjct: 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH 487

Query: 320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI 379
             +  +V +L         +A + +              L  +G I  L  LL+      
Sbjct: 488 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 546

Query: 380 VTVCLEGLENILKVGEAEKN--------TGSTIGDVNQYARLVEEDEGFKKIEGLKSHDN 431
                 G      V                  +        ++           L     
Sbjct: 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606

Query: 432 NGIREKAVKIL 442
             I+  A  +L
Sbjct: 607 ENIQRVAAGVL 617

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  231 bits (589), Expect = 3e-68
 Identities = 69/420 (16%), Positives = 131/420 (31%), Gaps = 23/420 (5%)

Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYP-QL 83
                      D   Q   T   R+     R+    + +  G+     +F        Q 
Sbjct: 69  FNQSFNQEQVADIDGQYAMTRAQRV-----RAAMFPETLDEGMQIPSTQFDSAHPTNVQR 123

Query: 84  QYEAAWALTNIASG-TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
             E +  L +      +   +  +   A+P   KLL      V  +A   +  ++     
Sbjct: 124 LAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS 183

Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLI 202
              ++   + +  ++  +     +   R  + TL  L   +           +PAL  ++
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243

Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
               + VL  A  TL  L          V  AG  +++V LL   +   L      +  +
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303

Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
             G+      I+  G    L+ ++     + +       +  + +       A+++AG +
Sbjct: 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGM 362

Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
             L   L D    + +     + N     +    K    EG +  L  LL   D  +VT 
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTC 418

Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
               L N+       K     +G +    R V           L++ D   I E A+  L
Sbjct: 419 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTV-----------LRAGDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  202 bits (515), Expect = 9e-58
 Identities = 64/379 (16%), Positives = 118/379 (31%), Gaps = 34/379 (8%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQL 83
              A+V  + +      L  T++   +LS+  S +   +++AG +      L      +L
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPS-QRL 376

Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
                W L N++      T      G +   V+LL S   +V   A   L N+  ++   
Sbjct: 377 VQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433

Query: 144 RNLVLREEALIPLLAQL-NEHAKLSMLRIATWTLSKLCKGKPQPPFDQVR----PALPAL 198
           + +V +   +  L+  +     +  +   A   L  L          Q        LP +
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493

Query: 199 AQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258
            +L+H      L  A   L             + E G   RLV+LL              
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553

Query: 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID 318
                  +  + + I+                       AC    +I A +      +  
Sbjct: 554 GTQQQFVEGVRMEEIVE----------------------ACTGALHILARDIHNRIVIRG 591

Query: 319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK 378
              I   V +L     +I++ AA  +         E  + +  EG   PL +LL   +  
Sbjct: 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEG 649

Query: 379 IVTVCLEGLENILKVGEAE 397
           + T     L  + +    +
Sbjct: 650 VATYAAAVLFRMSEDKPQD 668

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  145 bits (367), Expect = 9e-38
 Identities = 63/338 (18%), Positives = 105/338 (31%), Gaps = 32/338 (9%)

Query: 23  EILPAMVAGVWSDDNSLQLEATTQFRIL--LSIERSPRIEDVIQAGVVPRFVEFLMRE-D 79
            +L  +V  + SDD ++   A     IL  L+         V Q G +   V  ++R  D
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAA---GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 455

Query: 80  YPQLQYEAAWALTNIASG---TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 136
              +   A  AL ++ S      M  N V  H  +P+ VKLL  PS     +A   L   
Sbjct: 456 REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 515

Query: 137 AADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALP 196
            A  P     +  + A IP L QL   A     R  +                       
Sbjct: 516 LALCPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSM-------------------GGT 555

Query: 197 ALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPAL 256
               +  +  EE++      L  L+        V+         V+LL  P  ++   A 
Sbjct: 556 QQQFVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 614

Query: 257 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV 316
             +  +    +   + I   GA   L  LL   ++  +   A   +  ++    +  +  
Sbjct: 615 GVLCELAQDKE-AAEAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMSEDKPQDYKKR 672

Query: 317 IDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHE 354
           +   L   L         +         A     G  +
Sbjct: 673 LSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQ 710

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 70.1 bits (171), Expect = 6e-13
 Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 7/160 (4%)

Query: 13  RPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFV 72
           R   + Q +  +       V        +EA T    +L+ +   RI  +     +P FV
Sbjct: 541 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV-IRGLNTIPLFV 599

Query: 73  EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWA 132
           + L+      +Q  AA  L  +A         +   GA     +LL S ++ V   A   
Sbjct: 600 Q-LLYSPIENIQRVAAGVLCELAQDKE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAV 657

Query: 133 LGNVAADSPGCRNLVLREEALIPLL----AQLNEHAKLSM 168
           L  ++ D P      L  E    L        NE   L +
Sbjct: 658 LFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  252 bits (646), Expect = 6e-82
 Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 15/250 (6%)

Query: 194 ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253
            LP + Q ++ DD +    A    S +    N++IQ VI+AG    LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI 313
            ALW + NI  G + Q Q +I+ GA+P L+ LL   +++ I + A W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373
           QAVIDAG +  LV +L      I +EA  A++N    G +EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLS 190

Query: 374 CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNG 433
             + +I+   L  L NI   G              +  + V+E    +K+E L+SH+N  
Sbjct: 191 SPNEQILQEALWALSNIASGGN-------------EQKQAVKEAGALEKLEQLQSHENEK 237

Query: 434 IREKAVKILE 443
           I+++A + LE
Sbjct: 238 IQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  251 bits (643), Expect = 2e-81
 Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 4/242 (1%)

Query: 23  EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ 82
             LP M   + SDD   QL AT +F  +LS + + +I+ VI AG +P  V+ L   +  Q
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQ 69

Query: 83  LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
           +  EA WAL+NIASG +     VID GA+P  V+LL+SP++ + ++A+WAL N+A+    
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVR-PALPALAQL 201
               V+   A +P L QL       +L+ A W LS +  G  +     +   ALPAL QL
Sbjct: 130 QIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188

Query: 202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261
           +   +E++L +A W LS ++ G N++ Q V EAG   +L +L  H +  +   A   +  
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

Query: 262 IV 263
           + 
Sbjct: 249 LQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  189 bits (482), Expect = 2e-57
 Identities = 88/288 (30%), Positives = 136/288 (47%), Gaps = 44/288 (15%)

Query: 59  IEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLL 118
                    +P+  + L  +D  Q Q  A    + I S  +     VID GA+P  V+LL
Sbjct: 5   HHHHHHGSELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 119 ASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK 178
           +SP++ + ++A+WAL N+A+        V+   AL                         
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL------------------------- 98

Query: 179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR 238
                            PAL QL+   +E++L +A W LS ++ G N++IQ VI+AG   
Sbjct: 99  -----------------PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141

Query: 239 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVA 298
            LV+LL  P+  +L  ALW + NI  G + Q Q +I+ GA+P L+ LL   +++ I + A
Sbjct: 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEA 200

Query: 299 CWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
            W +SNI +G  EQ QAV +AG +  L  +       I+KEA  A+  
Sbjct: 201 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  173 bits (440), Expect = 2e-51
 Identities = 84/245 (34%), Positives = 126/245 (51%), Gaps = 5/245 (2%)

Query: 148 LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVR--PALPALAQLIHLD 205
               + +P + Q      +     AT   S++           V    ALPAL QL+   
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLLSSP 66

Query: 206 DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG 265
           +E++L +A W LS ++ G N++IQ VI+AG    LV+LL  P+  +L  ALW + NI  G
Sbjct: 67  NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126

Query: 266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPL 325
            + Q Q +I+ GA+P L+ LL  +  + I + A W +SNI +G  EQIQAVIDAG +  L
Sbjct: 127 GNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 185

Query: 326 VNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE 385
           V +L      I +EA  A++N    G +EQ + +   G ++ L  L    + KI     E
Sbjct: 186 VQLLSSPNEQILQEALWALSN-IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244

Query: 386 GLENI 390
            LE +
Sbjct: 245 ALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  104 bits (262), Expect = 7e-26
 Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 3/157 (1%)

Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
           LPA+V  + S +  +  EA      + S     +I+ VI AG +P  V+ L+     Q+ 
Sbjct: 98  LPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQ-LLSSPNEQIL 155

Query: 85  YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144
            EA WAL+NIASG +     VID GA+P  V+LL+SP++ + ++A+WAL N+A+     +
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215

Query: 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
             V    A +  L QL  H    + + A   L KL  
Sbjct: 216 QAVKEAGA-LEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 2/115 (1%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQL 83
            LPA+V  + S +  +  EA      + +   + +I+ VI AG +P  V+ L   +  Q+
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNI-ASGGNEQIQAVIDAGALPALVQLLSSPN-EQI 196

Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA 138
             EA WAL+NIASG +     V + GA+    +L +  ++ ++++A  AL  + +
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 14/133 (10%)

Query: 310 REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLC 369
           R           +  +   L   +   +  A    +       +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQIL-SDGNEQIQAVIDAGALPALV 60

Query: 370 DLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH 429
            LL   + +I+   L  L NI              G   Q  + V +      +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 430 DNNGIREKAVKIL 442
            N  I ++A+  L
Sbjct: 108 PNEQILQEALWAL 120

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  240 bits (614), Expect = 1e-77
 Identities = 73/197 (37%), Positives = 109/197 (55%), Gaps = 2/197 (1%)

Query: 194 ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253
            LP + Q ++  D++ L  A   LS ++ G N++IQ VI+AG    LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI 313
            ALW + NI  G + Q Q +I+ GA+P L+ LL  +  + I + A W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373
           QAVIDAG +  LV +L      I +EA  A++N    G +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQS 190

Query: 374 CVDPKIVTVCLEGLENI 390
             + KI     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  188 bits (481), Expect = 6e-58
 Identities = 68/217 (31%), Positives = 107/217 (49%), Gaps = 15/217 (6%)

Query: 229 QVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 288
                     ++V+ L  P    L  AL  +  I  G + Q Q +I+ GA+P L+ LL  
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 289 NHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANAT 348
            +++ I + A W +SNI +G  EQIQAVIDAG +  LV +L      I +EA  A++N  
Sbjct: 66  PNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 349 VRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVN 408
             G +EQI+ ++  G +  L  LL   + +I+   L  L NI   G              
Sbjct: 125 S-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------------- 170

Query: 409 QYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY 445
           +  + V+E    +K+E L+SH+N  I+++A + LE  
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  165 bits (420), Expect = 5e-49
 Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 60  EDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA 119
                   +P+ V+ L   D  Q    A   L+ IASG +     VID GA+P  V+LL+
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 120 SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179
           SP++ + ++A+WAL N+A+        V+   AL  L+  L       +L+ A W LS +
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNI 123

Query: 180 CKGKPQPPFDQVRP-ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR 238
             G  +     +   ALPAL QL+   +E++L +A W LS ++ G N++ Q V EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 239 RLVELLGHPSPSVLTPALWTVGNI 262
           +L +L  H +  +   A   +  +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 24  ILPAMVAGVWSDDNSLQLEATTQFRILLSI--ERSPRIEDVIQAGVVPRFVEFLMREDYP 81
            LPA+V  + S +  +  EA      L +I    + +I+ VI AG +P  V+ L+     
Sbjct: 97  ALPALVQLLSSPNEQILQEAL---WALSNIASGGNEQIQAVIDAGALPALVQ-LLSSPNE 152

Query: 82  QLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA 138
           Q+  EA WAL+NIASG +     V + GA+    +L +  ++ ++++A  AL  + +
Sbjct: 153 QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 14/133 (10%)

Query: 310 REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLC 369
           R           +  +V  L   +    + A   ++     G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALV 60

Query: 370 DLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH 429
            LL   + +I+   L  L NI              G   Q  + V +      +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNI------------ASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 430 DNNGIREKAVKIL 442
            N  I ++A+  L
Sbjct: 108 PNEQILQEALWAL 120

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  214 bits (547), Expect = 6e-66
 Identities = 58/351 (16%), Positives = 116/351 (33%), Gaps = 35/351 (9%)

Query: 40  QLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99
           Q+ A  +          P ++               M          A   L  ++    
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 100 MNTNVVIDHGAVPIFVKLLASPSD-----------DVREQAVWALGNVAADSPGCRNLVL 148
            + + + + G +    +LL    +            +R  A  AL N+       +  + 
Sbjct: 65  -HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 149 REEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVR--PALPALAQL-IHLD 205
             +  +  L    +     + ++    L  L           +R   ++ AL +  + + 
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 206 DEEVLSDACWTLSYLS-YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP-------ALW 257
            E  L      L  LS + T +K  +    G    LV  L + S +            L 
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI 317
            V +++  ++   Q +  +  +  LL  L  +H  +I   AC T+ N++A N +  +A+ 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 318 DAGLIVPLVNVLQDAEFDIKKEAALAIAN-ATVRGTHEQIKYLVREGCIKP 367
           D G +  L N++      I   +A A+ N    R    +   ++  G   P
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  184 bits (469), Expect = 2e-54
 Identities = 57/323 (17%), Positives = 111/323 (34%), Gaps = 26/323 (8%)

Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFL--------- 75
           +      + +        A       LS +   R   + + G +    E L         
Sbjct: 34  MDQDKNPMPAPVEHQICPAVCVLM-KLSFDEEHRHA-MNELGGLQAIAELLQVDCEMYGL 91

Query: 76  -MREDYPQLQYEAAWALTNIASGTSMNTNVVI-DHGAVPIFVKLLASPSDDVREQAVWAL 133
                   L+  A  ALTN+  G   N   +    G +   V  L S S+D+++     L
Sbjct: 92  TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151

Query: 134 GNVAAD-SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP--QPPFDQ 190
            N++       +  +    ++  L+    E  K S L+     L  L       +     
Sbjct: 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 211

Query: 191 VRPALPALAQLI----HLDDEEVLSDACWTLSYLSY---GTNDKIQVVIEAGVCRRLVEL 243
           V  AL  L   +      +   ++      L  +S       D  Q++ E    + L++ 
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271

Query: 244 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTIS 303
           L   S ++++ A  T+ N+   +    + + + GAV  L  L+ H+  K I   +   + 
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALR 330

Query: 304 NITAGN--REQIQAVIDAGLIVP 324
           N+ A    + +   ++  G  +P
Sbjct: 331 NLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 84.9 bits (210), Expect = 3e-18
 Identities = 25/165 (15%), Positives = 57/165 (34%), Gaps = 12/165 (7%)

Query: 220 LSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAV 279
            +Y                +    +  P    + PA+  +  +   ++     +   G +
Sbjct: 17  RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGL 75

Query: 280 PCLLALL----------IHNHKKSIKKVACWTISNITAGNREQIQAVI-DAGLIVPLVNV 328
             +  LL            ++  ++++ A   ++N+T G+      +    G +  LV  
Sbjct: 76  QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 135

Query: 329 LQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373
           L+    D+++  A  + N + R      K L   G +K L +  L
Sbjct: 136 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 180

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  186 bits (473), Expect = 4e-54
 Identities = 54/357 (15%), Positives = 113/357 (31%), Gaps = 36/357 (10%)

Query: 68  VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVRE 127
           +P+ V++L  +D  + Q   A+ + +           V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP 187
            A  AL N+   S   +    R+  +   ++ L       + +  T  L  L        
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 188 FDQVRPALPALAQLI----------------HLDDEEVLSDACWTLSYLSYGTNDKIQVV 231
            + +  ALP LA  +                 + D EV  +A   L  LS     +  + 
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 232 IEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHK 291
             +G+   L+  + +   +           + +  +   +           L     N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 292 KSIKKVACWTISNITAGNREQIQA-------------VIDAGLIVPLVNVLQDAEFDIKK 338
                  C++  +    N                   +  +  I   +N++  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 339 EAALA-----IANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390
           EA         A+  +  +       ++E  +  +  LL   +  +V      L N+
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  107 bits (267), Expect = 2e-25
 Identities = 32/308 (10%), Positives = 83/308 (26%), Gaps = 28/308 (9%)

Query: 65  AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDD 124
           +G              P++ + A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 125 VREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-- 182
            R         +         L          L     +A         ++         
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 183 -------------KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDK-- 227
                        K              L  +     +  L      L  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 228 ---IQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA 284
                + ++     ++  LL   +  V+      + N+          ++ +   P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 285 LLIHNHKKS-----IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFD-IKK 338
           LL  +   +     I   AC+T+ N+ A   +  +    + ++  ++N+ + +      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 339 EAALAIAN 346
            A L +++
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 98.0 bits (243), Expect = 3e-22
 Identities = 49/399 (12%), Positives = 105/399 (26%), Gaps = 51/399 (12%)

Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
           +  +V  + S + ++Q  A    R L     +    +  +   +   V  L R    ++Q
Sbjct: 46  ICKLVDLLRSPNQNVQQAAAGALRNL-VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 85  YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP----------------SDDVREQ 128
            +    L N++S         +   A+P+    +  P                  +V   
Sbjct: 105 KQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

Query: 129 AVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC--KGKPQP 186
           A   L N+++   G R  +     LI  L    ++   +         + +C        
Sbjct: 163 ATGCLRNLSSADAG-RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221

Query: 187 PFDQVRPALPALAQLIHLDDEEVLSDACWTLSY-------------LSYGTNDKIQVVIE 233
              +V      L         E  S  C++                           +  
Sbjct: 222 LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH 281

Query: 234 AGVCRRLVELLGHPSP------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI 287
           +   R  + L+G                  T    +M         +    +P +  LL 
Sbjct: 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ 341

Query: 288 HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA------EFDIKKEAA 341
             +   + +     +SN++      +  V+   +   +  +L           DI   A 
Sbjct: 342 SGNSD-VVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398

Query: 342 LAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIV 380
             + N       +  K       +  + +L         
Sbjct: 399 YTVRNLM-ASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 84.5 bits (208), Expect = 8e-18
 Identities = 27/215 (12%), Positives = 71/215 (33%), Gaps = 20/215 (9%)

Query: 193 PALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVL 252
             +P   Q +   DE+  +   + + +  +      Q V + G   +LV+LL  P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 253 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ 312
             A   + N+V               +   ++LL       I+K     + N+++ +  +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--E 119

Query: 313 IQAVIDAGLIVPLVNVL----------------QDAEFDIKKEAALAIANATVRGTHEQI 356
           ++  + A  +  L + +                +  + ++   A   + N +        
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD--AGR 177

Query: 357 KYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL 391
           + +     +       +           + +EN +
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 76.8 bits (188), Expect = 2e-15
 Identities = 34/282 (12%), Positives = 89/282 (31%), Gaps = 31/282 (10%)

Query: 51  LSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGA 110
           LS   + R      +G++   +   ++      + +       +    +++  +  +   
Sbjct: 170 LSSADAGRQTMRNYSGLIDSLMA-YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228

Query: 111 VPIFVKLLASPSDDVREQAVWALGNVA---------------ADSPGCRNLVLREEALIP 155
               +    + +    + +     N +                 +P     +   +A+  
Sbjct: 229 RYRQL-EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT 287

Query: 156 LLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVR------PALPALAQLIHLDDEEV 209
            L  + +  K + L      L  L   K        +        LP +A+L+   + +V
Sbjct: 288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347

Query: 210 LSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL------GHPSPSVLTPALWTVGNIV 263
           +      LS +S   +  +  V+   V   +  LL         S  +L+ A +TV N++
Sbjct: 348 VRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM 405

Query: 264 MGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI 305
                  +   +   +  ++ L   +      + A   +S++
Sbjct: 406 ASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 14/173 (8%)

Query: 23  EILPAMVAGVWSDDNSLQLEATTQFRILLSI-----ERSPRIEDVIQAGVVPRFVEFLMR 77
           + +   +  +        LEA       L+               ++   +P+    L++
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR-LLQ 341

Query: 78  EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS------PSDDVREQAVW 131
                +    A  L+N++       + V+ +   P   +LL S       S+D+   A +
Sbjct: 342 SGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY 399

Query: 132 ALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP 184
            + N+ A  P           L  ++      A       A   LS +   K 
Sbjct: 400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 13/121 (10%)

Query: 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVT 381
           I   V  L   +   +   A  I +          + + + G I  L DLL   +  +  
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI 441
                L N++      K        + +   L            L+   N  I+++   +
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSL------------LRRTGNAEIQKQLTGL 110

Query: 442 L 442
           L
Sbjct: 111 L 111

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  184 bits (467), Expect = 4e-53
 Identities = 53/293 (18%), Positives = 103/293 (35%), Gaps = 24/293 (8%)

Query: 76  MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-----------PSDD 124
           M          A   L  ++     + + + + G +    +LL              S  
Sbjct: 157 MPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 125 VREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP 184
           +R  A  AL N+       +  +   +  +  L    +     + ++    L  L     
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 275

Query: 185 QPPFDQVR--PALPALAQL-IHLDDEEVLSDACWTLSYLS-YGTNDKIQVVIEAGVCRRL 240
                 +R   ++ AL +  + +  E  L      L  LS + T +K  +    G    L
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335

Query: 241 VELLGHPSPSVLTP-------ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKS 293
           V  L + S +            L  V +++  ++   Q +  +  +  LL  L  +H  +
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLT 394

Query: 294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
           I   AC T+ N++A N +  +A+ D G +  L N++      I   +A A+ N
Sbjct: 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  174 bits (443), Expect = 1e-49
 Identities = 72/438 (16%), Positives = 156/438 (35%), Gaps = 65/438 (14%)

Query: 10  SAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVI-QAGVV 68
           S  R + +L TK+E++ ++++ + + D   + + +   R LL++  S      + Q+G +
Sbjct: 19  SHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQSGCL 72

Query: 69  PRFVEFLMRED-----------YPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
           P  ++ L   D             + +  A+ AL NI      +     +   + +  ++
Sbjct: 73  PLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQI 132

Query: 118 ------------------------LASPSDDVREQAVWALGNVAADSPGCRNLVLREEAL 153
                                   + +P +     AV  L  ++ D    R+ +     L
Sbjct: 133 RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGL 191

Query: 154 IPLLAQL----------NEHAKLSMLRIATWTLSKLCKGKP--QPPFDQVRPALPALAQL 201
             +   L          N+H  +++ R A   L+ L  G    +     ++  + AL   
Sbjct: 192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 251

Query: 202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVI-EAGVCRRLVELLGHPS-PSVLTPALWTV 259
           +  + E++       L  LS+  +   +  + E G  + L+E        S L   L  +
Sbjct: 252 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 311

Query: 260 GNI-VMGDDFQTQCIINHGAVPCLLALLIHNHKKS---IKKVACWTISNIT---AGNREQ 312
            N+     + +       GA+  L+  L +  + +   I +     + N++   A N + 
Sbjct: 312 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371

Query: 313 IQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLL 372
            Q + +   +  L+  L+     I   A   + N + R   +  + L   G +  L +L+
Sbjct: 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLI 430

Query: 373 LCVDPKIVTVCLEGLENI 390
                 I       L N+
Sbjct: 431 HSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  172 bits (436), Expect = 1e-48
 Identities = 57/320 (17%), Positives = 108/320 (33%), Gaps = 26/320 (8%)

Query: 17  NLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFL- 75
             +     +      + +        A       LS +   R   + + G +    E L 
Sbjct: 142 WQEAHEPGMDQDKNPMPAPVEHQICPAVCVLM-KLSFDEEHRHA-MNELGGLQAIAELLQ 199

Query: 76  ---------MREDYPQLQYEAAWALTNIASGTSMNTNVVI-DHGAVPIFVKLLASPSDDV 125
                           L+  A  ALTN+  G   N   +    G +   V  L S S+D+
Sbjct: 200 VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL 259

Query: 126 REQAVWALGNVAAD-SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT---WTLSKLCK 181
           ++     L N++       +  +    ++  L+    E  K S L+      W LS  C 
Sbjct: 260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319

Query: 182 GKPQPPFDQVRPALPALAQLIHLD----DEEVLSDACWTLSYLSY---GTNDKIQVVIEA 234
              +     V  AL  L   +          ++      L  +S       D  Q++ E 
Sbjct: 320 EN-KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378

Query: 235 GVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSI 294
              + L++ L   S ++++ A  T+ N+   +    + + + GAV  L  L+ H+  K I
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMI 437

Query: 295 KKVACWTISNITAGNREQIQ 314
              +   + N+ A    + +
Sbjct: 438 AMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  127 bits (320), Expect = 2e-32
 Identities = 62/418 (14%), Positives = 132/418 (31%), Gaps = 61/418 (14%)

Query: 55  RSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIF 114
           R   +      G     V  L+       + + +  L  + S +  +   +   G +P+ 
Sbjct: 17  RGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAM-SSSQDSCISMRQSGCLPLL 75

Query: 115 VKLL------------ASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE 162
           ++LL            +  S + R +A  AL N+    P  +    RE  ++ LL Q+  
Sbjct: 76  IQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDK-RGRREIRVLHLLEQIRA 134

Query: 163 HAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY 222
           + +        W   +  +       + +               E  +  A   L  LS+
Sbjct: 135 YCE------TCWEWQEAHEPGMDQDKNPMP-----------APVEHQICPAVCVLMKLSF 177

Query: 223 GTNDKIQVVIEAGVCRRLVELL-----------GHPSPSVLTPALWTVGNIVMGDDFQTQ 271
               +   + E G  + + ELL            H S ++   A   + N+  GD     
Sbjct: 178 DEEHR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 236

Query: 272 CII-NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI-DAGLIVPLVNVL 329
            +    G +  L+A L    +  +++V    + N++       +  + + G +  L+   
Sbjct: 237 TLCSMKGCMRALVAQLKSESED-LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295

Query: 330 QDAEFD-IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC----VDPKIVTVCL 384
            + + +   K    A+ N +   T  +      +G +  L   L          I+    
Sbjct: 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355

Query: 385 EGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
             L N+  +    ++    + + N    L++               +  I   A   L
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQ----------HLKSHSLTIVSNACGTL 403

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  180 bits (458), Expect = 6e-51
 Identities = 73/457 (15%), Positives = 149/457 (32%), Gaps = 69/457 (15%)

Query: 48  RILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVID 107
             L S+ +        +   +P  +  L       ++  AA  L ++          V  
Sbjct: 30  ASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRK 88

Query: 108 HGAVPIFVKLLASPSDDVREQAVWALGNVA-ADSPGCRNLVLREEALIPLLAQLNEHAKL 166
              +P+ V LL  P  +V   A  AL N++       +  +   + +  L+  L +   +
Sbjct: 89  LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM 148

Query: 167 SMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLI------------------HLDDEE 208
            +  + T TL  L         + V  AL AL   +                  H++ E 
Sbjct: 149 DLTEVITGTLWNLS-SHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207

Query: 209 VLSDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVELLGH--------------------- 246
           VL++    L  +S   ++  + + E  G+   L+ ++                       
Sbjct: 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN 267

Query: 247 ----------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKK 296
                      +      A     N         + +     V   ++LL  +   +I +
Sbjct: 268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327

Query: 297 VACWTISNITAGNR---EQIQAVI-DAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT 352
            +   I N+ AG       I++ +     +  + ++L +    + K A+ A+ N  V   
Sbjct: 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV--- 384

Query: 353 HEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYA 411
             + K L+ +  I  L   L             + + +IL            I +  + A
Sbjct: 385 DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI------NEVIAENLEAA 438

Query: 412 RLVEEDEGFKKIEGLKSHDNNGIREK--AVKILETYW 446
           + + E +G +K+  +    N   +E   A  +L+T W
Sbjct: 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  102 bits (255), Expect = 1e-23
 Identities = 59/404 (14%), Positives = 116/404 (28%), Gaps = 66/404 (16%)

Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
           +P +V  +      + L A    + +           +     VP  V  L +     L 
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151

Query: 85  YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP------------------SDDVR 126
                 L N++S    +  + I   A+      +  P                   + V 
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 127 EQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLS------MLRIATWTLSKLC 180
                 L NV+++    R  +   + L+  L  + +           ++      L  L 
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 181 KGKPQPPFDQVRP--------------------------ALPALAQLIHL-DDEEVLSDA 213
               +      R                            +     L+       +L  +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 214 CWTLSYLSYGT----NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 269
              +  L  G           + +      + +LL +    V+  A   + N+ +    +
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--R 387

Query: 270 TQCIINHGAVPCLLALLIHNHKKSIKKV-------ACWTISNITAGNREQIQAVIDAGLI 322
            + +I   A+P L+  L    + S              TI+ + A N E  + + +   I
Sbjct: 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447

Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIK 366
             LV + +      K+  A A+   T+ G  E  K L +EG  K
Sbjct: 448 EKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKK 491

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 78.8 bits (193), Expect = 9e-16
 Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 12/194 (6%)

Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           G P+    +  P+       +   +   L+      S  S                  ++
Sbjct: 1   GSPEFMIGEEVPSDQYYWAPLAQHERGSLA------SLDSLRKGGPPPPNWRQPELPEVI 54

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
            +LG    +V + A   + ++   +D     +     +P L+ LL H  K+ +   AC  
Sbjct: 55  AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKE-VHLGACGA 113

Query: 302 ISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEF-DIKKEAALAIANATVRGTHEQIKYL 359
           + NI+ G +++   A+ +   +  LV +L+ A   D+ +     + N +    H+ IK  
Sbjct: 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS---HDSIKME 170

Query: 360 VREGCIKPLCDLLL 373
           + +  +  L D ++
Sbjct: 171 IVDHALHALTDEVI 184

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  150 bits (380), Expect = 4e-42
 Identities = 35/238 (14%), Positives = 80/238 (33%), Gaps = 3/238 (1%)

Query: 63  IQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS 122
           + +  +P       +    Q +  A   L ++        +     G   +  + L + +
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 123 DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182
             +R +A   +G  + +    +  VL   AL  LL  L+  A  ++   A + +S L + 
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 183 KPQPPFDQVR-PALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
           +       +R      L + +    +++   + + L  L  G  +    +   G+ ++LV
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215

Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVAC 299
            L+           L  + ++V       +          L  LL H  +   +    
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  121 bits (304), Expect = 2e-31
 Identities = 40/256 (15%), Positives = 85/256 (33%), Gaps = 9/256 (3%)

Query: 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSV 251
           +P  P   +     D++    A   L+ L    ++       +G+   +   L   +  +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 252 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE 311
              A   +G          + ++  GA+  LL LL  +   +++  A + IS +      
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 312 QIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL 371
            +   +       L+  +Q     +K ++A  + N  V G  E    L   G ++ L  L
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV-GHPEHKGTLCSMGMVQQLVAL 217

Query: 372 LLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDN 431
           +           L  L +++                     L+       + + L+ H+ 
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVR--ECREPELGLEELLRH-----RCQLLQQHEE 270

Query: 432 NG-IREKAVKILETYW 446
                E   K+L+T +
Sbjct: 271 YQEELEFCEKLLQTCF 286

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 88.2 bits (218), Expect = 1e-19
 Identities = 23/181 (12%), Positives = 55/181 (30%), Gaps = 2/181 (1%)

Query: 34  SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTN 93
           +    L+  A            + + E V+  G + + +  L R+    ++ +A +A++ 
Sbjct: 93  AGAAGLRWRAAQLIGTCSQNVAAIQ-EQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 94  IASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEAL 153
           +           +      + ++ +      ++ ++ + L N+    P  +   L    +
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG-TLCSMGM 210

Query: 154 IPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDA 213
           +  L  L               L  L    PQ   +   P L     L H        + 
Sbjct: 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 270

Query: 214 C 214
            
Sbjct: 271 Y 271

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  143 bits (362), Expect = 4e-37
 Identities = 63/418 (15%), Positives = 135/418 (32%), Gaps = 61/418 (14%)

Query: 68  VPRFVEFLMREDYPQLQYEAAWALTNIASG-TSMNTNVVIDHGAVPIFVKLLASPSDDVR 126
           +  +++  +     + +     A+T + +G   +   VV   G + + + +  +  +  +
Sbjct: 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQ 307

Query: 127 EQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC-----K 181
             A   L   ++     + L    E  + +L +L       +   A   L KL       
Sbjct: 308 RVACECLIAASSKKDKAKALC---EQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQD 364

Query: 182 GKPQPPFDQVRPALPALAQ---LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR 238
              +P  D     L    +   +    D+++   A   L+YL+     K +++ +     
Sbjct: 365 AAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIH 424

Query: 239 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQT---------------------------- 270
            L++L    + S L   + T  N+    + Q                             
Sbjct: 425 ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI 484

Query: 271 ----QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLV 326
                 + N G    L AL       + +++    ++ +  G +E    V+  G +  L+
Sbjct: 485 NKRITVLANEGITTALCALAKTES-HNSQELIARVLNAV-CGLKELRGKVVQEGGVKALL 542

Query: 327 NVLQDAEFDIKKEAALAIANATVRGTHE-QIKYLVREGCIKPLCDLLLC-VDPKIVTVCL 384
            +  +     K+ A  A+A   +    E           I+PL +LL            L
Sbjct: 543 RMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602

Query: 385 EGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
             L N+  + E                + + +++G  KIE     D+  +   A + L
Sbjct: 603 MALTNLASMNE-------------SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  129 bits (325), Expect = 2e-32
 Identities = 39/292 (13%), Positives = 83/292 (28%), Gaps = 5/292 (1%)

Query: 58  RIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
           RI  +   G+       L + +    Q   A  L  +          V+  G V   +++
Sbjct: 487 RITVLANEGITTALCA-LAKTESHNSQELIARVLNAVCGLKE-LRGKVVQEGGVKALLRM 544

Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--LREEALIPLLAQLNEHAKLSMLRIATWT 175
               ++  +  A  AL  +        +       + + PLL  L +         +   
Sbjct: 545 ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMA 604

Query: 176 LSKLCKGKPQPPFDQVR-PALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEA 234
           L+ L           ++   +  +   +  D   +   A   L  L    +         
Sbjct: 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNN 664

Query: 235 GVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSI 294
              + L  L         T     +  I        + I+   +   +L  LI N   ++
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724

Query: 295 KKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
           +      I N+     E  + + +  ++  L  + Q  +    K   +A   
Sbjct: 725 QHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQC 776

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  126 bits (316), Expect = 4e-31
 Identities = 55/433 (12%), Positives = 120/433 (27%), Gaps = 98/433 (22%)

Query: 50  LLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT----------- 98
            L+++   + + +     +   ++     +     Y       N+ +             
Sbjct: 405 YLTLDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIE 463

Query: 99  ---------------------SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 137
                                +    V+ + G       L  + S + +E     L  V 
Sbjct: 464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC 523

Query: 138 ADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRP--A 194
                 R  V++E  +  LL    E  +    R AT  L+++     P+  F   R    
Sbjct: 524 GL-KELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITINPEVSFSGQRSLDV 581

Query: 195 LPALAQLIHLDDEEVLS-DACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253
           +  L  L+  D   + + ++   L+ L+       Q +I+     ++   L      +  
Sbjct: 582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYL-- 639

Query: 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI 313
                                                     + A   + N+        
Sbjct: 640 -----------------------------------------TRAAAQCLCNLVMSEDVIK 658

Query: 314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373
               +   +  L  + +D + +     A A+A  T        K L     +  L  L+ 
Sbjct: 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA 718

Query: 374 CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNG 433
              P +    +  + N++  GE             + A+ + E +  + + GL    ++ 
Sbjct: 719 NPSPAVQHRGIVIILNMINAGE-------------EIAKKLFETDIMELLSGLGQLPDDT 765

Query: 434 ---IREKAVKILE 443
               RE A + L 
Sbjct: 766 RAKAREVATQCLA 778

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  108 bits (269), Expect = 3e-25
 Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 4/230 (1%)

Query: 25  LPAMVAGVWSDDNSLQLEATTQF-RILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQL 83
           + A++          +  AT    RI ++I             V+   +  L ++     
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597

Query: 84  QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
            +E+  ALTN+AS        +I    V      L      +   A   L N+   S   
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDV 656

Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA--LPALAQL 201
             +       +  LA L E             L+ +     +     +  A  L  L  L
Sbjct: 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716

Query: 202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSV 251
           I      V       +  +     +  + + E  +   L  L   P  + 
Sbjct: 717 IANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTR 766

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 84.9 bits (209), Expect = 1e-17
 Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 4/202 (1%)

Query: 10  SAPRPSLNLQTKLEILPAMVAGVWSDDNSLQ-LEATTQFRILLSIERSPRIEDVIQAGVV 68
             P  S + Q  L+++  ++  +  D  +L+  E+      L S+  S R   +I+   V
Sbjct: 567 INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQR-IIKEQGV 625

Query: 69  PRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQ 128
            +     + ED+  L   AA  L N+     +      ++  V     L     ++    
Sbjct: 626 SKIEY-YLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATA 684

Query: 129 AVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPF 188
              AL  + + S  C   +L   + + +L  L  +   ++       +  +     +   
Sbjct: 685 CAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAK 744

Query: 189 DQVRP-ALPALAQLIHLDDEEV 209
                  +  L+ L  L D+  
Sbjct: 745 KLFETDIMELLSGLGQLPDDTR 766

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 1/116 (0%)

Query: 23  EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ 82
           + +  +      +D            I+ S+      + +  A  +      +     P 
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS-PA 723

Query: 83  LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA 138
           +Q+     + N+ +        + +   + +   L   P D   +    A   +AA
Sbjct: 724 VQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  120 bits (303), Expect = 7e-32
 Identities = 35/202 (17%), Positives = 61/202 (30%), Gaps = 19/202 (9%)

Query: 68  VPRFVEFLMRED-YPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVR 126
           + R V  L  +   P     AA  + +     S     V     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 127 EQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP 186
                AL N+  +    +  V     +  LL  L +   L   +  T  L  L       
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 187 PFDQVRPALPALAQLI----------------HLDDEEVLSDACWTLSYLSYGTNDKIQV 230
               +  AL  L + I                 L D ++  +    L  +S    D  + 
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 231 VIEA-GVCRRLVELLGHPSPSV 251
           +    G+   LV  +       
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADY 210

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 88.9 bits (220), Expect = 2e-20
 Identities = 37/225 (16%), Positives = 74/225 (32%), Gaps = 28/225 (12%)

Query: 190 QVRPALPALAQLIHLDD--EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP 247
            +   L     ++  D      +S A   + +  +  ++  + V +     +L++LL   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307
           +  V       + N+V  D+     +     VP LL +L        KK     + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 308 GNREQIQAVIDAGLIVPLVNVL---------------QDAEFDIKKEAALAIANATVRGT 352
            + +    +I   L+    N++                  +FDI       + N +  G 
Sbjct: 125 ND-KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG- 182

Query: 353 HEQIKYLVRE--GCIKPLCDLL------LCVDPKIVTVCLEGLEN 389
               +  +R   G I  L   +         D K    C+  L N
Sbjct: 183 -ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 58.8 bits (142), Expect = 5e-10
 Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 19/156 (12%)

Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
           +  ++  +   +  +Q       R L   E +    +V +   VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALRNL-VFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 85  YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP----------------SDDVREQ 128
            +    L N++S        ++   A+    + +  P                  D+   
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN 170

Query: 129 AVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
               L N+++     R  + R + LI  L       
Sbjct: 171 VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT 206

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 87.4 bits (216), Expect = 1e-19
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 27/242 (11%)

Query: 23  EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ 82
            +L  ++  +  D  ++   A     I++ I ++   ED+ +  ++ +    L + +   
Sbjct: 32  SVLKKLIELLDDDLWTVVKNA---ISIIMVIAKTR--EDLYEP-MLKKLFSLLKKSEAIP 85

Query: 83  LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
           L  E A A   +A         +I     P+         +  +    +AL  +A  +P 
Sbjct: 86  LTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLI 202
               ++     + +L+  N   KL+ L      +  + +         V P LP +  L+
Sbjct: 141 LMASIV--RDFMSMLSSKNREDKLTAL----NFIEAMGENSF----KYVNPFLPRIINLL 190

Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
           H  DE V + A   L +L+   +   +VVI      + +E L   S  V       +  +
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL 244

Query: 263 VM 264
           ++
Sbjct: 245 LL 246

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 64.3 bits (156), Expect = 8e-12
 Identities = 27/201 (13%), Positives = 67/201 (33%), Gaps = 20/201 (9%)

Query: 67  VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVR 126
           V+ + +E L  +D   +   A   +  IA         ++      +F  L  S +  + 
Sbjct: 33  VLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 127 EQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP 186
           ++   A G +A + P         +++IP+L               ++ L ++ K  P  
Sbjct: 88  QEIAKAFGQMAKEKPE------LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 187 PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH 246
               +   +     ++   + E    A   +  +   +   +   +       ++ LL  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPR-----IINLLHD 192

Query: 247 PSPSVLTPALWTVGNIVMGDD 267
               V   A+  + ++   +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.9 bits (183), Expect = 2e-14
 Identities = 74/475 (15%), Positives = 143/475 (30%), Gaps = 141/475 (29%)

Query: 53  IERSPRIEDVI---QAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS---GTSMNTNVVI 106
           +  + R+   +   Q  +V +FVE ++R +Y        + ++ I +     SM T + I
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMMTRMYI 113

Query: 107 D-----HGAVPIFVKLLASPSDDV-REQAVWAL----------GNVAADS-PGC-----R 144
           +     +    +F K       +V R Q    L           NV  D   G       
Sbjct: 114 EQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 145 NLVLREEALIP-------------------LLAQLNEHAKLSMLRIATWTLSKLCKGKPQ 185
             V     +                     +L  L       +L       +        
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-----KLLYQIDPNWTSRSDHSSN 222

Query: 186 PP--FDQVRPALPALAQ-------LIHLDDEEVLSDACWTLSYLSYG------TNDKIQV 230
                  ++  L  L +       L+ L +   + +A    +  +        T  K QV
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLN---VQNA-KAWNAFNLSCKILLTTRFK-QV 277

Query: 231 VIEAGVCRRLVELLGHPSPSVLTP-------ALWTVGNIVMGDDFQTQCIINHGAVPCLL 283
                        L H S + LTP         +   +    D  +     N    P  L
Sbjct: 278 TDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYL--DCRPQDLPREVLTTN----PRRL 330

Query: 284 AL---LIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEA 340
           ++    I +           T  N    N +++  +I++ L     NVL+ AE+   ++ 
Sbjct: 331 SIIAESIRDGLA--------TWDNWKHVNCDKLTTIIESSL-----NVLEPAEY---RKM 374

Query: 341 --ALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEK 398
              L++   +       I  ++       L  +   V    V V +  L     V +  K
Sbjct: 375 FDRLSVFPPSAH-----IPTIL-------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 399 NTGSTIGDVNQYARLVEEDEGF--KKI----EGLKSHDNNGIREKAVKILETYWC 447
            +  +I  +    ++  E+E    + I       K+ D++ +       L+ Y+ 
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL---IPPYLDQYFY 474

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 29/282 (10%), Positives = 69/282 (24%), Gaps = 56/282 (19%)

Query: 65  AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDD 124
                     L   +    +  +A  L                  AV + ++  +  +  
Sbjct: 22  KLNDDELFRLLDDHN-SLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYI 69

Query: 125 VREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP 184
            R+   + LG +             +     L           +   A  + ++ CK  P
Sbjct: 70  RRDIGAFILGQIKICKK------CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP 123

Query: 185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL 244
                     +             V     + +S +        +  I       L+ LL
Sbjct: 124 IYS----PKIVEQSQITAFDKSTNVRRATAFAISVI------NDKATIPL-----LINLL 168

Query: 245 GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN 304
             P+  V   A + +      +              C + +L   + + ++  A   +S 
Sbjct: 169 KDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKN-EEVRIEAIIGLSY 218

Query: 305 ITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
               ++  +  + D          L+     +  +   A   
Sbjct: 219 R--KDKRVLSVLCDE---------LKKN--TVYDDIIEAAGE 247

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 55.6 bits (134), Expect = 8e-09
 Identities = 36/246 (14%), Positives = 69/246 (28%), Gaps = 49/246 (19%)

Query: 58  RIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
           +I    +  V        + +    ++  A  +            N +     V      
Sbjct: 82  KICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK-----KNPIYSPKIVEQSQIT 136

Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS 177
               S +VR    +A+              + ++A IPLL  L +     +   A + ++
Sbjct: 137 AFDKSTNVRRATAFAISV------------INDKATIPLLINLLKDPNGDVRNWAAFAIN 184

Query: 178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVC 237
                                 +++   +EEV  +A   LSY       K + V+     
Sbjct: 185 INKYDNSD--------IRDCFVEMLQDKNEEVRIEAIIGLSYR------KDKRVLSV--- 227

Query: 238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKV 297
             L + L     +V    +   G +  GD            +P L  +L       I   
Sbjct: 228 --LCDELKK--NTVYDDIIEAAGEL--GDK---------TLLPVLDTMLYKFDDNEIITS 272

Query: 298 ACWTIS 303
           A   + 
Sbjct: 273 AIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 31/259 (11%), Positives = 68/259 (26%), Gaps = 54/259 (20%)

Query: 124 DVREQAVWALGNVAADSPGC----------RNLVLREEAL-----------IPLLAQLNE 162
             + +A    G                    N + R  +            + L  +   
Sbjct: 5   YQKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCS 64

Query: 163 HAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY 222
                   I  + L ++     +   D V   L      ++     V + A  + +    
Sbjct: 65  DKNYIRRDIGAFILGQI--KICKKCEDNVFNIL--NNMALNDKSACVRATAIESTAQRCK 120

Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
                   ++E              S +V     + +  I   D            +P L
Sbjct: 121 KNPIYSPKIVEQ-----SQITAFDKSTNVRRATAFAISVI--NDK---------ATIPLL 164

Query: 283 LALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL 342
           + LL   +   ++  A + I+     N +     ++          LQD   +++ EA +
Sbjct: 165 INLLKDPN-GDVRNWAAFAININKYDNSDIRDCFVEM---------LQDKNEEVRIEAII 214

Query: 343 AIANATVRGTHEQIKYLVR 361
            ++    R     +  L  
Sbjct: 215 GLSY---RKDKRVLSVLCD 230

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 34/173 (19%)

Query: 48  RILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVID 107
             + S  +  +   +    +V +       +    ++   A+A++ I            D
Sbjct: 110 TAIESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------D 157

Query: 108 HGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLS 167
              +P+ + LL  P+ DVR  A +A+     D+   R      +  + +L   NE  ++ 
Sbjct: 158 KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIR------DCFVEMLQDKNEEVRIE 211

Query: 168 MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220
               A   LS            + +  L  L     L    V  D       L
Sbjct: 212 ----AIIGLSYR----------KDKRVLSVLCDE--LKKNTVYDDIIEAAGEL 248

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 40/236 (16%), Positives = 73/236 (30%), Gaps = 56/236 (23%)

Query: 110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSML 169
            V +++K L   S  VR  A +ALG             + +E  +  L +  +     + 
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGK------------IGDERAVEPLIKALKDEDAWVR 62

Query: 170 RIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQ 229
           R A   L ++              A+  L + +  +D  V   A   L  +        +
Sbjct: 63  RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD------E 106

Query: 230 VVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN 289
             +E      L++ L      V   A + +G I  GD+          AV  L+  L   
Sbjct: 107 RAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKALKDE 150

Query: 290 HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIA 345
               +++ A   +  I  G      A+             +      +K A   + 
Sbjct: 151 D-GWVRQSAADALGEI--GGERVRAAMEKL---------AETGTGFARKVAVNYLE 194

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 38/219 (17%), Positives = 69/219 (31%), Gaps = 56/219 (25%)

Query: 68  VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVRE 127
           V  +++ L  +    ++  AA+AL  I            D  AV   +K L      VR 
Sbjct: 16  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63

Query: 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP 187
            A  ALG             + +E  +  L +  +     + + A   L ++  G  +  
Sbjct: 64  AAADALGQ------------IGDERAVEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 107

Query: 188 FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP 247
                 A+  L + +  +D  V   A + L  +        +  +E      L++ L   
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFALGEI------GDERAVEP-----LIKALKDE 150

Query: 248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 286
              V   A   +G I  G +              +  L 
Sbjct: 151 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA 178

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 28/154 (18%), Positives = 45/154 (29%), Gaps = 34/154 (22%)

Query: 67  VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVR 126
            V   ++ L  ED   ++  AA AL  I            D  AV   +K L      VR
Sbjct: 77  AVEPLIKALKDED-GWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVR 124

Query: 127 EQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP 186
             A +ALG             + +E  +  L +  +     + + A   L ++       
Sbjct: 125 IAAAFALGE------------IGDERAVEPLIKALKDEDGWVRQSAADALGEI------- 165

Query: 187 PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220
                     A+ +L           A   L   
Sbjct: 166 ---GGERVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 38/263 (14%), Positives = 77/263 (29%), Gaps = 68/263 (25%)

Query: 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP 187
           +      +              +   + +  +  +     + R A + L K+        
Sbjct: 2   RGSHHHHH------------HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKI-------- 41

Query: 188 FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP 247
                 A+  L + +  +D  V   A   L  +        +  +E      L++ L   
Sbjct: 42  --GDERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDE 88

Query: 248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307
              V   A   +G I  GD+          AV  L+  L       ++  A + +  I  
Sbjct: 89  DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDW-FVRIAAAFALGEI-- 134

Query: 308 GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKP 367
           G+   ++ +I A         L+D +  +++ AA A+              +  E     
Sbjct: 135 GDERAVEPLIKA---------LKDEDGWVRQSAADALGE------------IGGERVRAA 173

Query: 368 LCDLLLCVDPKIVTVCLEGLENI 390
           +  L          V +  LE  
Sbjct: 174 MEKLAETGTGFARKVAVNYLETH 196

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 42/245 (17%), Positives = 76/245 (31%), Gaps = 57/245 (23%)

Query: 68  VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVRE 127
           V  +++ L  +    ++  AA+AL  I            D  AV   +K L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP 187
            A  ALG             + +E  +  L +  +     + + A   L ++  G  +  
Sbjct: 69  AAADALGQ------------IGDERAVEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 112

Query: 188 FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP 247
                 A+  L + +  +D  V   A + L  +        +  +E      L++ L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 155

Query: 248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307
              V   A   +G I  G +              +  L         +KVA   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAETGT-GFARKVAVNYLETHKS 203

Query: 308 GNREQ 312
            N   
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 41/239 (17%), Positives = 74/239 (30%), Gaps = 56/239 (23%)

Query: 107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKL 166
           D   V +++K L   S  VR  A +ALG             + +E  +  L +  +    
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGK------------IGDERAVEPLIKALKDEDA 64

Query: 167 SMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTND 226
            + R A   L ++              A+  L + +  +D  V   A   L  +      
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 227 KIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 286
             +  +E      L++ L      V   A + +G I  GD+          AV  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 287 IHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIA 345
                  +++ A   +  I  G      A+             +      +K A   + 
Sbjct: 153 KDED-GWVRQSAADALGEI--GGERVRAAMEKL---------AETGTGFARKVAVNYLE 199

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 38/245 (15%), Positives = 75/245 (30%), Gaps = 56/245 (22%)

Query: 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLD 205
            +  +   + +  +  +     + R A + L K+              A+  L + +  +
Sbjct: 13  PLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI----------GDERAVEPLIKALKDE 62

Query: 206 DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG 265
           D  V   A   L  +           +E      L++ L      V   A   +G I  G
Sbjct: 63  DAWVRRAAADALGQIGDER------AVEP-----LIKALKDEDGWVRQSAAVALGQI--G 109

Query: 266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPL 325
           D+          AV  L+  L       ++  A + +  I  G+   ++ +I A      
Sbjct: 110 DE---------RAVEPLIKALKDEDW-FVRIAAAFALGEI--GDERAVEPLIKA------ 151

Query: 326 VNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE 385
              L+D +  +++ AA A+              +  E     +  L          V + 
Sbjct: 152 ---LKDEDGWVRQSAADALGE------------IGGERVRAAMEKLAETGTGFARKVAVN 196

Query: 386 GLENI 390
            LE  
Sbjct: 197 YLETH 201

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 42/361 (11%), Positives = 113/361 (31%), Gaps = 50/361 (13%)

Query: 98  TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLRE---EALI 154
              N   ++    +    + + + S + ++Q V  + N+          + ++   + ++
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIIL 504

Query: 155 PLLAQLNEHAKLSMLRIATWTLSKLC-KGKPQPPFDQVRP--ALPALAQLIHLDDEEVLS 211
             LA   +  +     +    L+++     P   F +     A+P L +L+        +
Sbjct: 505 EYLANKQDIGEPIR-ILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDN 563

Query: 212 DACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ 271
                        +++I++         L  L    +                G++    
Sbjct: 564 PLH---------NDEQIKLTDNYEALLALTNLASSETSD--------------GEEVCKH 600

Query: 272 CIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL------IVPL 325
            +        +  L++  +   +++     ISN+ +          +            L
Sbjct: 601 IVSTKVYWSTIENLMLDENVP-LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNIL 659

Query: 326 VNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL--CVDPKIVTVC 383
           V +LQ ++ + ++  A   AN          + L ++  I+    +      D ++    
Sbjct: 660 VKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRL 719

Query: 384 LEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKI--EGLKSHDNNGIREKAVKI 441
           L     + +V              N+   L++E++  K      LK  D+      A+ +
Sbjct: 720 LMLFFGLFEVIPDN--------GTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPV 771

Query: 442 L 442
           +
Sbjct: 772 I 772

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 50.9 bits (121), Expect = 6e-07
 Identities = 52/415 (12%), Positives = 126/415 (30%), Gaps = 51/415 (12%)

Query: 8   LPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGV 67
            PS       +     +       V+ + +    +   +      I+ + R        +
Sbjct: 240 YPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMR------TYI 293

Query: 68  VPRFVEFLMRE-DYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVR 126
              +++ L R  +   +Q  +A  L    S T +    +       IF+  ++       
Sbjct: 294 TENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINAISRRIVPKV 351

Query: 127 EQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLR--IATWTLSKLCKGKP 184
           E +V AL  ++      + ++   E+   +L  + +  K++     +    ++ L     
Sbjct: 352 EMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLV-IMANLSTLPE 409

Query: 185 QPPFDQVRPALPAL------AQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR 238
           +                        +  E+   +                + ++   +  
Sbjct: 410 EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILL---------FNEKYILRTELIS 460

Query: 239 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN--HKKSIKK 296
            L   + + SP+     +  + NI    +F  Q +   GAV  +L  L +     + I+ 
Sbjct: 461 FLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRI 519

Query: 297 VACWTISN--ITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKK--------------EA 340
           + C  ++   I        +       I  L  +L  +                    EA
Sbjct: 520 LGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEA 579

Query: 341 ALAIANATVRGTHEQIK----YLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL 391
            LA+ N     T +  +     +  +     + +L+L  +  +    LE + N++
Sbjct: 580 LLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 10/162 (6%)

Query: 9   PSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQ-LEATTQFRILLSIERSPRIEDVIQAGV 67
            +A      L  +   +                 EA      L S E S   E       
Sbjct: 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS 603

Query: 68  VPRF---VEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG------AVPIFVKLL 118
              +   +E LM ++   LQ      ++N+ S          +           I VKLL
Sbjct: 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL 663

Query: 119 ASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQL 160
                + +        N+A   P     +L ++ LI    Q+
Sbjct: 664 QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQV 705

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 74/434 (17%), Positives = 144/434 (33%), Gaps = 46/434 (10%)

Query: 14  PSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVE 73
              +          +V  +   D       T+   +       PR+   ++A +   F  
Sbjct: 116 HEHSPSDLEAHFVPLVKRLAGGDW--FTSRTSACGLFSVCY--PRVSSAVKAELRQYFRN 171

Query: 74  FLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWAL 133
            L  +D P ++  AA  L   A    +  + V     +P+F  L +   D VR  AV A 
Sbjct: 172 -LCSDDTPMVRRAAASKLGEFAK--VLELDNVKSE-IIPMFSNLASDEQDSVRLLAVEAC 227

Query: 134 GNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRP 193
            N+A   P        E  ++P L Q  E     +  +     ++L K     P      
Sbjct: 228 VNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA--VGPEITKTD 281

Query: 194 ALPALAQLIHLDDEEVLSDACWTLSYLSYG-TNDKIQVVIEAGVCRRLVELLGHPSPSVL 252
            +PA   L+   + EV + A   +       + D  + VI + +   + EL+   +  V 
Sbjct: 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVK 341

Query: 253 TPALWTVGNI--VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR 310
           +     +  +  ++G D   + ++     P  LA L    K    +V    ISN+   N 
Sbjct: 342 SALASVIMGLSPILGKDNTIEHLL-----PLFLAQL----KDECPEVRLNIISNLDCVNE 392

Query: 311 EQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCD 370
                 +   L+  +V + +DA++ ++      +     +   E     +   C+  L D
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452

Query: 371 LLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD 430
                   I       L+ +++            G    +A ++       K+  +    
Sbjct: 453 ----HVYAIREAATSNLKKLVEK----------FGKEWAHATIIP------KVLAMSGDP 492

Query: 431 NNGIREKAVKILET 444
           N   R   +  +  
Sbjct: 493 NYLHRMTTLFCINV 506

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 55.9 bits (133), Expect = 2e-08
 Identities = 39/336 (11%), Positives = 114/336 (33%), Gaps = 19/336 (5%)

Query: 14  PSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLS----IERSPRIEDVIQAGVVP 69
             +       I+  +   + SD   L+  ++   + ++           +   +   +  
Sbjct: 77  SKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG 136

Query: 70  RFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQA 129
           R    + +++   +Q EA   + ++ S       V      +   +  L SP   VR++ 
Sbjct: 137 RLTSAIAKQEDVSVQLEALDIMADMLSRQG-GLLVNFHPSILTCLLPQLTSPRLAVRKRT 195

Query: 130 VWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFD 189
           + ALG++      C N+V   + +  LL++L+++  +S  R     ++ + +       +
Sbjct: 196 IIALGHLV---MSCGNIVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 251

Query: 190 QVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP 249
            +   +P + +  ++DD+E+                 ++   +   +    ++ L +   
Sbjct: 252 YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKYLTY--- 307

Query: 250 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN 309
               P           +        +             +    +++ A   +  + +  
Sbjct: 308 ---DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR 364

Query: 310 REQIQAVIDAGLIVP-LVNVLQDAEFDIKKEAALAI 344
            E +        + P L++  ++ E ++K +   A 
Sbjct: 365 HEMLPEFYKT--VSPALISRFKEREENVKADVFHAY 398

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.9 bits (120), Expect = 7e-07
 Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 25/302 (8%)

Query: 5    QRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQ 64
              F  +      N    +++L  +   V+S   +L  + +           +        
Sbjct: 756  LDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP 815

Query: 65   AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDD 124
            A V     +         ++  A  +L  +     ++  + +      + ++  +SPS++
Sbjct: 816  AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEE 871

Query: 125  VREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLS-MLRIATWTLSKLCKGK 183
            V+  A +ALG+++  +          E L  +L ++    K   +L  +   +       
Sbjct: 872  VKSAASYALGSISVGNL--------PEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVV 923

Query: 184  PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL 243
               P+  V      L +     +E   +     L         K+ ++    +  RL   
Sbjct: 924  GLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGY 973

Query: 244  LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTIS 303
            L   S    +  +  V   +  D  Q    +    +   L  L      ++++VA  T +
Sbjct: 974  LISGSSYARSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDPD-LNVRRVALVTFN 1031

Query: 304  NI 305
            + 
Sbjct: 1032 SA 1033

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 34/143 (23%)

Query: 75  LMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALG 134
            M ++   ++ + + AL+ +               A    ++ L++    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 135 NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA 194
           N             ++E  +  L +L E     +   A  +L ++  G  +         
Sbjct: 68  N------------FQDERAVEPLIKLLEDDSGFVRSGAARSLEQI--GGER--------V 105

Query: 195 LPALAQLIHLDDEEVLSDACWTL 217
             A+ +L           A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 36/143 (25%)

Query: 110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSML 169
            +      +A  +  VR     AL              + +EA  PLL  L+       +
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESLSNED--WRI 58

Query: 170 RI-ATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKI 228
           R  A W +             Q   A+  L +L+  D   V S A  +L  +  G     
Sbjct: 59  RGAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQI--GGER-- 104

Query: 229 QVVIEAGVCRRLVELLGHPSPSV 251
             V  A     + +L    +   
Sbjct: 105 --VRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 23/104 (22%)

Query: 75  LMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALG 134
            +  +  +++  AAW + N             D  AV   +KLL   S  VR  A  +L 
Sbjct: 50  SLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLE 98

Query: 135 NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK 178
                        +  E +   + +L E       ++A   L  
Sbjct: 99  Q------------IGGERVRAAMEKLAETGTGFARKVAVNYLET 130

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 41/306 (13%), Positives = 92/306 (30%), Gaps = 34/306 (11%)

Query: 67  VVPRFVEFL---MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSD 123
           ++   +EF+   +  D  + +  A  A  +I  G          H A+P  + L+   S 
Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425

Query: 124 DVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLS--MLRIATWTLSKLCK 181
            V+E   W +G +A         +  ++ L  ++       +    +    +WT+  L +
Sbjct: 426 QVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE 482

Query: 182 GKPQPPFDQVRPALPA-LAQLIH-----LDDEEVLSDACWTLSYLSYGTNDKIQVVIEA- 234
              +     +    PA +  LI       ++    + A   L+ +     D +     + 
Sbjct: 483 QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASI 542

Query: 235 --GVCRRLVELLGHPSPSVLTP-------------ALWTVGNIVMGDDFQTQCIINHGAV 279
              V  +L + +      +                 +            +         +
Sbjct: 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA---DMLM 599

Query: 280 PCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKE 339
                LL       I+    + IS + A   +  +  ++      L+  L   +  +   
Sbjct: 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSPVSIT 658

Query: 340 AALAIA 345
           A   IA
Sbjct: 659 AVGFIA 664

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 24/200 (12%)

Query: 68  VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVRE 127
               +  ++  D   L+Y  A+ +    +GT  N+ V        +    ++  +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP 187
            AV ALG V                +  ++  L++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ- 646

Query: 188 FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-- 245
                 A+  L  L     + V   A   LS +     +K+   + A + +  + ++   
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV-ADINKNFLSVITNK 700

Query: 246 HPSPSVLTPALWTVGNIVMG 265
           H        A    G +  G
Sbjct: 701 HQEGLAKFGACVAQGIMNAG 720

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 38/262 (14%), Positives = 81/262 (30%), Gaps = 16/262 (6%)

Query: 123 DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRI---ATWTLSKL 179
                 + W L   +A +      V R+E L  +L  L E        +       L  +
Sbjct: 327 GGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI 386

Query: 180 CKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRR 239
            +G  Q     +   +P L Q +      V S  CWTLS  ++    +        +   
Sbjct: 387 AEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTE 446

Query: 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH--GAVPCLLALLIHNHKKSIKKV 297
           L++ +   +  V   A      +    +     ++ +    +  L+      ++     +
Sbjct: 447 LLKRILDSNKRVQEAACSAFATLE---EEACTELVPYLAYILDTLVFAF-SKYQHKNLLI 502

Query: 298 ACWTISNI-TAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKK-----EAALAIANATVRG 351
               I  +  +      +      L+ PL+      + + K      E   ++A A   G
Sbjct: 503 LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG 562

Query: 352 THEQIKYLVREGCIKPLCDLLL 373
                + + +  C+  +   L 
Sbjct: 563 FLPYCEPVYQR-CVNLVQKTLA 583

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN---LVLREEALIPLLAQLNEHAKLS 167
           +P    LL S   +  E A  AL  +  DS    +   L      +IP   Q  +H+   
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189

Query: 168 MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220
           +   A   +++    + Q     +   +  L  L   ++ EV  + C  L  L
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 13/210 (6%)

Query: 18  LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR 77
                  L  ++     DD + +L A      +L    S     V++   +  F+   + 
Sbjct: 28  ALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALS 85

Query: 78  EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALG--N 135
           ++  ++  +A  AL  +     M +   +   A    V LL SP D +R + +  L    
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQ 143

Query: 136 VAADSPGCRNLVLREEALIPLLAQ------LNEHAKLSMLRIATWTLSKLCKGKPQPPFD 189
              DS   R  +        L  +             S        +        Q   +
Sbjct: 144 PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNE 203

Query: 190 QVR-PALPALAQLIHLDDEEVLSDACWTLS 218
            +   AL  L + +     E +      +S
Sbjct: 204 FIVELALDVLEKALSFPLLENVKIELLKIS 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.98
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.94
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.82
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.81
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.81
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.8
3grl_A	651	General vesicular transport factor P115; vesicle t	99.79
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.77
3grl_A	651	General vesicular transport factor P115; vesicle t	99.77
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.74
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.72
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.69
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.68
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.68
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.66
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.65
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.64
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.63
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.63
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.61
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.6
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.52
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.49
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.48
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.47
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.45
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.45
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.35
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.16
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.1
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.1
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.06
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.04
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.03
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.01
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	99.0
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.9
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.84
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.84
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.81
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.76
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.73
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.66
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.57
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.56
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.54
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.54
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.53
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.5
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.39
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.38
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.35
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.32
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.31
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.24
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.17
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.09
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.08
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.98
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.93
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.77
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.66
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.55
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.53
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.52
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.44
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.41
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.38
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.35
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.34
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.33
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.33
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.31
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.18
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.93
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.76
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.74
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.74
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.65
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.32
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.2
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.2
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.97
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.97
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.94
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.62
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.42
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.37
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.35
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.95
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.89
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.31
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.21
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	93.87
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	93.81
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.66
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	93.61
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	92.8
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	92.78
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	92.57
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	92.3
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	91.62
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	91.48
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	90.45
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.2
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	88.56
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	87.67
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	86.71
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	86.27
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	86.26
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	86.14
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	86.12
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	85.57
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	84.42
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	83.49
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	83.41
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	80.11

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=7e-56  Score=427.19  Aligned_cols=420  Identities=46%  Similarity=0.764  Sum_probs=389.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .++.+++.++|+|++.|+.|+..++++++.++.++++.+++.|++|.|+++|++++.+++|..|+|+|+|++.++++.+.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            48999999999999999999999999999887888999999999999999998776689999999999999999999999


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc----cHHHHHHHHHHHHHh
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA----KLSMLRIATWTLSKL  179 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~l~~l  179 (458)
                      .+++.|++|.|+.+|.++++.+++.|+|+|+||+.+.+..++.+.+.|++++++.++....    ...+++.++|++.++
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995332    345788999999999


Q ss_pred             hcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950          180 CKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT  258 (458)
Q Consensus       180 ~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  258 (458)
                      +.+. +........+++|.|+.++.+++++++..++++|++++....+..+.+.+.|+++.|+.++.+++..++..++++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9987 455556668999999999999999999999999999998888888888999999999999999999999999999


Q ss_pred             HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHH
Q 043950          259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKK  338 (458)
Q Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~  338 (458)
                      +++++..++.....+++.|+++.|+.+|.++ +..+++.|+|+|+|++.+++.+...+.+.|+++.|+.++.+++.+++.
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  376 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  376 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence            9999999999999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcc
Q 043950          339 EAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE  418 (458)
Q Consensus       339 ~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (458)
                      +|+|+|+|++..++.+++.++.+.|+++.|+++++++|++++..++++|.++++..+..       +..+.+...|+++|
T Consensus       377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~-------~~~~~~~~~iee~g  449 (510)
T 3ul1_B          377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEECG  449 (510)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc-------cchHHHHHHHHHcC
Confidence            99999999999889999999999999999999999999999999999999999987764       34677899999999


Q ss_pred             hHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950          419 GFKKIEGLKSHDNNGIREKAVKILETYWCGRVV  451 (458)
Q Consensus       419 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  451 (458)
                      |+++|+.|++|+|++|+++|..+|++||..||+
T Consensus       450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  482 (510)
T 3ul1_B          450 GLDKIEALQRHENESVYKASLNLIEKYFSVEEE  482 (510)
T ss_dssp             HHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            999999999999999999999999999987654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.1e-54  Score=421.36  Aligned_cols=421  Identities=46%  Similarity=0.752  Sum_probs=389.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      ..++.+++.++++|++.++.|+..++++++.+..++...+++.|++|.|+++|+..+++.++..|+|+|+|++.++++.+
T Consensus        76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            35899999999999999999999999999888788899999999999999999876668999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc----cHHHHHHHHHHHHH
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA----KLSMLRIATWTLSK  178 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~l~~  178 (458)
                      ..+++.|++|.|+.++.++++.+++.|+|+|+||+.+++.+++.+.+.|++++++.++....    ...+++.++|++.+
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995332    34578899999999


Q ss_pred             hhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHH
Q 043950          179 LCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW  257 (458)
Q Consensus       179 l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  257 (458)
                      ++.+. +........+++|.|+.++.+++++++..++|+|.+++....+..+.+.+.|+++.|+.++.+++..++..+++
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~  315 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  315 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence            99987 55556667899999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhH
Q 043950          258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIK  337 (458)
Q Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~  337 (458)
                      ++++++.+++.....+++.|+++.|+.+|.++ ++.+++.|+|+|+|++.+++.+...+.+.|+++.|+.++.+++.+++
T Consensus       316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~  394 (529)
T 3tpo_A          316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  394 (529)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence            99999999999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhc
Q 043950          338 KEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEED  417 (458)
Q Consensus       338 ~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (458)
                      .+|+|+|+|++..++.++...+.+.|+++.|+++|.++|++++..++++|.++++..+..       +..+.+...++++
T Consensus       395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~-------~~~~~~~~~iee~  467 (529)
T 3tpo_A          395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEEC  467 (529)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc-------cChHHHHHHHHHC
Confidence            999999999999888999999999999999999999999999999999999999987764       2467788999999


Q ss_pred             chHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950          418 EGFKKIEGLKSHDNNGIREKAVKILETYWCGRVV  451 (458)
Q Consensus       418 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  451 (458)
                      ||+++|..|++|+|++|+++|..+|++||..+|+
T Consensus       468 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  501 (529)
T 3tpo_A          468 GGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  501 (529)
T ss_dssp             TCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999999999999999999987654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=4.7e-49  Score=383.60  Aligned_cols=429  Identities=77%  Similarity=1.183  Sum_probs=391.2

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      ...+|.+++.|.++++.++..|+++|+++++....+....+++.|++|.|+++|.+++++.++..|+++|++++.++++.
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            35699999999999999999999999999887645778899999999999999998765899999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                      +..+++.|+++.|+.++.++++.+++.|+|+|++++.+.+..+..+.+.|+++.++..+..+.++.++..++|+|.+++.
T Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~  232 (528)
T 4b8j_A          153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR  232 (528)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999998888889999999999999999777889999999999999999


Q ss_pred             CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950          182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN  261 (458)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~  261 (458)
                      ..+........+++|.++.++.+.++.++..++++|++++...+...+.+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus       233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n  312 (528)
T 4b8j_A          233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN  312 (528)
T ss_dssp             SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence            87777777789999999999999999999999999999998888777888999999999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHH
Q 043950          262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAA  341 (458)
Q Consensus       262 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~  341 (458)
                      ++.+++...+.+++.|+++.|+.+|.++.++.++..|+|+|+|++.++++....+++.|+++.|+.++.+++.+++..|+
T Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~  392 (528)
T 4b8j_A          313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA  392 (528)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            99988888889999999999999998765789999999999999998889999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHH
Q 043950          342 LAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK  421 (458)
Q Consensus       342 ~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (458)
                      ++|++++..++++...++.+.|+++.|+.++..++++++..++++|.+++...+.....+.  ...+.+...+.+.|+++
T Consensus       393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~  470 (528)
T 4b8j_A          393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLE  470 (528)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHH
Confidence            9999999987889999999999999999999999999999999999999988766321100  12456899999999999


Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhcCCCCCC
Q 043950          422 KIEGLKSHDNNGIREKAVKILETYWCGRVVG  452 (458)
Q Consensus       422 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  452 (458)
                      .|..+++|+++++++.|.+++++||..++.+
T Consensus       471 ~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~  501 (528)
T 4b8j_A          471 KIENLQSHDNNEIYEKAVKILEAYWMDEEDD  501 (528)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCCcccc
Confidence            9999999999999999999999999987654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=4.4e-47  Score=369.54  Aligned_cols=427  Identities=54%  Similarity=0.810  Sum_probs=387.1

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      .+.++.+++.|+++++.++..|++.|+++++....+....+++.|++|.|+++|.+++++.++..|+++|++++.++++.
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            36799999999999999999999999999887545667888999999999999999733899999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                      +..++..|+++.|+.++.++++.+++.|+|+|++++.+.+..+..+...|+++.++.++ .+.++.++..++|+|.+++.
T Consensus       166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999998888888888999999999999 55888999999999999998


Q ss_pred             CC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          182 GK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       182 ~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                      .. +........+++|.++.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|+
T Consensus       245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~  324 (530)
T 1wa5_B          245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG  324 (530)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence            86 66666777999999999999999999999999999999887777788888999999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHH
Q 043950          261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEA  340 (458)
Q Consensus       261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a  340 (458)
                      +++.+++.....+++.|+++.++.+|.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.+++++++..|
T Consensus       325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  403 (530)
T 1wa5_B          325 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  403 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            99998888888888999999999999998 99999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCH--HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcc
Q 043950          341 ALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE  418 (458)
Q Consensus       341 ~~~L~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (458)
                      +++|++++..+++  +....+.+.|+++.|+.++.++++.++..++++|.+++...+.....  +.+..+.+...+.+.|
T Consensus       404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~--~~~~~~~~~~~l~~~g  481 (530)
T 1wa5_B          404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA--RGLNINENADFIEKAG  481 (530)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HTCSSCHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc--ccccccHHHHHHHHcC
Confidence            9999999987666  77888899999999999999999999999999999999877653210  0012356789999999


Q ss_pred             hHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCCC
Q 043950          419 GFKKIEGLKSHDNNGIREKAVKILETYWCGRVVG  452 (458)
Q Consensus       419 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  452 (458)
                      +++.|..|++++++++++.|..+|++||..++.+
T Consensus       482 ~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          482 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            9999999999999999999999999999887663

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1e-45  Score=353.64  Aligned_cols=426  Identities=56%  Similarity=0.875  Sum_probs=381.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      .++.+++.++++++.++..|+..|+++++....+....+++. |+++.|++++++++++.++..|+++|.+++.++++..
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            488999999999999999999999998774335556777887 9999999999998338999999999999999888888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      ..+++.|+++.|+.++.++++.+++.|+++|++++.+.+..+..+.+.|+++.++..+..+.++.++..++|++.+++..
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            88889999999999999999999999999999999988888888888999999999996567899999999999999987


Q ss_pred             C-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950          183 K-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN  261 (458)
Q Consensus       183 ~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~  261 (458)
                      . +........+++|.++.++.++++.++..+++++.+++...+.....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            6 555566669999999999999999999999999999998777777778889999999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHH
Q 043950          262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAA  341 (458)
Q Consensus       262 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~  341 (458)
                      ++...+...+.+++.|+++.++.++.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.+++++++..|+
T Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~  339 (450)
T 2jdq_A          261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA  339 (450)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            9998888888888899999999999998 999999999999999998888899999999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHH
Q 043950          342 LAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK  421 (458)
Q Consensus       342 ~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (458)
                      ++|++++..++++..+.+.+.|+++.|+.+++.++++++..++++|.+++...+.....+.  ...+++...+.+.|+++
T Consensus       340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~  417 (450)
T 2jdq_A          340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGLD  417 (450)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC--SCCCHHHHHHHHHHCHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc--cchhHHHHHHHHcCcHH
Confidence            9999999876778888888999999999999999999999999999999987665321000  12346889999999999


Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhcCCCCCC
Q 043950          422 KIEGLKSHDNNGIREKAVKILETYWCGRVVG  452 (458)
Q Consensus       422 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  452 (458)
                      .|..+++++++++++.|..++++||.+++++
T Consensus       418 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  448 (450)
T 2jdq_A          418 KIEFLQSHENQEIYQKAFDLIEHYFGTEDED  448 (450)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            9999999999999999999999999888765

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=7.1e-44  Score=343.50  Aligned_cols=389  Identities=26%  Similarity=0.408  Sum_probs=340.6

Q ss_pred             ccccCCCCCCCCChhhHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHH
Q 043950            4 SQRFLPSAPRPSLNLQTKLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ   82 (458)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~   82 (458)
                      +|+++..+..||-+.....|.+|.|+++|++ +++.+|..|+|+|+++++++ ++....+++.|++|.|+++|.+++ ++
T Consensus        81 ~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~  158 (510)
T 3ul1_B           81 ARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AH  158 (510)
T ss_dssp             HHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HH
T ss_pred             HHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HH
Confidence            4555555555665667788999999999985 56899999999999999876 778889999999999999999998 89


Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHH
Q 043950           83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAADSPGCRNLVLREEALIPLL  157 (458)
Q Consensus        83 i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~  157 (458)
                      +++.|+|+|+|++.++++.+..+.+.|+++.|+.++.+++     ..+.+.++|++++++.+...........++++.|+
T Consensus       159 v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~  238 (510)
T 3ul1_B          159 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV  238 (510)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHH
Confidence            9999999999999988999999999999999999998643     46788999999999987755555555567889999


Q ss_pred             HHhcccccHHHHHHHHHHHHHhhcCCCCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCc
Q 043950          158 AQLNEHAKLSMLRIATWTLSKLCKGKPQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGV  236 (458)
Q Consensus       158 ~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  236 (458)
                      .++ .+.+++++..++|+|++++...+... .....++++.++.++.+.+..++..+++++++++..++.....+++.|+
T Consensus       239 ~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~  317 (510)
T 3ul1_B          239 RLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA  317 (510)
T ss_dssp             HHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred             HHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccc
Confidence            988 78889999999999999998753322 2234789999999999999999999999999999888888888999999


Q ss_pred             HHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHH
Q 043950          237 CRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQA  315 (458)
Q Consensus       237 i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~  315 (458)
                      ++.|+.++.+++..++..|+|+|+|++.+++.....+++.|+++.++.++.++ +.+++++|+|+|+|++. ++.+++.+
T Consensus       318 l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~  396 (510)
T 3ul1_B          318 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVY  396 (510)
T ss_dssp             GGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 99999999999999997 67889999


Q ss_pred             HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC-----CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950          316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR-----GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI  390 (458)
Q Consensus       316 l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l  390 (458)
                      +++.|+++.|+++|...|++++..++++|.|++..     ........+.+.|+++.|..+..++++++.+.|..+|.++
T Consensus       397 L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y  476 (510)
T 3ul1_B          397 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  476 (510)
T ss_dssp             HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999753     2234455667899999999999999999999999999999


Q ss_pred             HHhchh
Q 043950          391 LKVGEA  396 (458)
Q Consensus       391 ~~~~~~  396 (458)
                      |..+++
T Consensus       477 f~~~~~  482 (510)
T 3ul1_B          477 FSVEEE  482 (510)
T ss_dssp             CC----
T ss_pred             CCCccc
Confidence            975543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.9e-43  Score=340.45  Aligned_cols=389  Identities=26%  Similarity=0.410  Sum_probs=340.1

Q ss_pred             ccccCCCCCCCCChhhHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHH
Q 043950            4 SQRFLPSAPRPSLNLQTKLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ   82 (458)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~   82 (458)
                      +|+++.....|+-+.....|.+|.|+++|+. +++.++..|+++|.++++++ +.....+++.|++|.|+.++.+++ ++
T Consensus       100 ~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~  177 (529)
T 3tpo_A          100 ARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AH  177 (529)
T ss_dssp             HHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HH
T ss_pred             HHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HH
Confidence            3455555555665567788999999999974 56999999999999999875 677888999999999999999999 89


Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHH
Q 043950           83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAADSPGCRNLVLREEALIPLL  157 (458)
Q Consensus        83 i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~  157 (458)
                      +++.|+|+|+|++.++++.+..+++.|+++.|+.++..++     ..+.+.++|++++++.+...........++++.|+
T Consensus       178 v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~  257 (529)
T 3tpo_A          178 ISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV  257 (529)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHH
Confidence            9999999999999989999999999999999999998643     46788999999999987655555555567889999


Q ss_pred             HHhcccccHHHHHHHHHHHHHhhcCCCCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCc
Q 043950          158 AQLNEHAKLSMLRIATWTLSKLCKGKPQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGV  236 (458)
Q Consensus       158 ~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  236 (458)
                      .++ .+++++++..++|+|.+++...+... .....+++|.++.++.+++..++..+++++++++..++.....+++.|+
T Consensus       258 ~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~  336 (529)
T 3tpo_A          258 RLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA  336 (529)
T ss_dssp             HHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred             HHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhccc
Confidence            988 78889999999999999998753322 2334789999999999999999999999999999888888888999999


Q ss_pred             HHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHH
Q 043950          237 CRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQA  315 (458)
Q Consensus       237 i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~  315 (458)
                      ++.|+.++.++++.++..|+|+|+|++.+++.....+++.|+++.++.++.++ +.+++.+|+|+|+|++. ++++++..
T Consensus       337 l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~  415 (529)
T 3tpo_A          337 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVY  415 (529)
T ss_dssp             GGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 99999999999999987 67889999


Q ss_pred             HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC-----CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950          316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR-----GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI  390 (458)
Q Consensus       316 l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l  390 (458)
                      +++.|+++.|+++|.+.|++++..++++|.|+...     ........+.+.|+++.|..+..+++.+|.+.|..+|.++
T Consensus       416 l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y  495 (529)
T 3tpo_A          416 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  495 (529)
T ss_dssp             HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999742     2234455667899999999999999999999999999999


Q ss_pred             HHhchh
Q 043950          391 LKVGEA  396 (458)
Q Consensus       391 ~~~~~~  396 (458)
                      |..+++
T Consensus       496 f~~~~~  501 (529)
T 3tpo_A          496 FSVEEE  501 (529)
T ss_dssp             C-----
T ss_pred             CCCccc
Confidence            875443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.7e-38  Score=309.16  Aligned_cols=375  Identities=25%  Similarity=0.345  Sum_probs=331.5

Q ss_pred             hhHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950           18 LQTKLEILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS   96 (458)
Q Consensus        18 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~   96 (458)
                      .....|.+|.|+++|.++ ++.++..|+++|.+++... .+....+++.|+++.|+++|.+++ ++++..|+++|++++.
T Consensus       125 ~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~  202 (530)
T 1wa5_B          125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAG  202 (530)
T ss_dssp             HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence            445678999999999987 8999999999999998764 566778889999999999999988 8999999999999999


Q ss_pred             CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHH
Q 043950           97 GTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTL  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l  176 (458)
                      ++++.+..+...|+++.|+.++.+.++.++..++|+|++++.+...........++++.++.++ .+.++.++..++|+|
T Consensus       203 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L  281 (530)
T 1wa5_B          203 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAI  281 (530)
T ss_dssp             TCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHH
T ss_pred             CCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999999977622233455678999999999 677899999999999


Q ss_pred             HHhhcCCCCCCh-hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhH
Q 043950          177 SKLCKGKPQPPF-DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA  255 (458)
Q Consensus       177 ~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a  255 (458)
                      .+++...+.... ....++++.++.++.+.++.++..++++|++++...+...+.+.+.|+++.|+.+|.++++.++..|
T Consensus       282 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A  361 (530)
T 1wa5_B          282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA  361 (530)
T ss_dssp             HHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHH
Confidence            999986432222 2235899999999999999999999999999998888777888899999999999999999999999


Q ss_pred             HHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCH--HHHHHHHHcCChHHHHHHhccC
Q 043950          256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNR--EQIQAVIDAGLIVPLVNVLQDA  332 (458)
Q Consensus       256 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~--~~~~~l~~~~~~~~L~~ll~~~  332 (458)
                      +++|++++.+++...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++. +.+  +....+++.|+++.|+.++.+.
T Consensus       362 ~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~  440 (530)
T 1wa5_B          362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA  440 (530)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC
Confidence            9999999998888888888999999999999988 99999999999999997 345  7888899999999999999999


Q ss_pred             ChhhHHHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950          333 EFDIKKEAALAIANATVRGTH----------EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       333 ~~~~~~~a~~~L~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      +++++..++++|.+++..++.          ..+..+.+.|+++.|..++.+++++++..+.++|.+++...+.
T Consensus       441 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~  514 (530)
T 1wa5_B          441 DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  514 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence            999999999999999875332          2456788899999999999999999999999999999976543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.5e-39  Score=319.19  Aligned_cols=367  Identities=15%  Similarity=0.117  Sum_probs=317.6

Q ss_pred             ccHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCccHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950           23 EILPAMVAGVWSD--DNSLQLEATTQFRILLSIERSPRIEDVI-QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        23 ~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ..++.++++|.++  |++++..|+++|..++..  .+....++ +.|++|.|++++++++ +.++..|+++|+|++.+.+
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d  453 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE  453 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence            4477888999988  899999999999999655  45555555 5799999999999988 8999999999999998542


Q ss_pred             -----------------------------hhH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHH
Q 043950          100 -----------------------------MNT---NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV  147 (458)
Q Consensus       100 -----------------------------~~~---~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  147 (458)
                                                   ..+   +.+++.|++|.|+.++.++++.+++.|+|+|+|++.+ +.++..+
T Consensus       454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~V  532 (810)
T 3now_A          454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKV  532 (810)
T ss_dssp             CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence                                         112   6788999999999999999999999999999999965 4589999


Q ss_pred             hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC-CCh--hhhhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccC
Q 043950          148 LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ-PPF--DQVRPALPALAQLIHLDDE-EVLSDACWTLSYLSYG  223 (458)
Q Consensus       148 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~--~~~~~~l~~l~~ll~~~~~-~~~~~~~~~l~~l~~~  223 (458)
                      .+.|++++|+.++ .++++..++.|+|+|.+++..... ..+  ....+++|.|+.++.++.. ..+..++++|.|++..
T Consensus       533 v~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~  611 (810)
T 3now_A          533 VQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM  611 (810)
T ss_dssp             HHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence            9999999999999 667788999999999999875321 111  1235789999999986533 4456899999999988


Q ss_pred             ChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHh-cCChHHHHHHhccCChhhHHHHHHHHH
Q 043950          224 TNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKKSIKKVACWTI  302 (458)
Q Consensus       224 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~v~~~a~~~l  302 (458)
                      +++..+.+++.|+++.|+.++.++++.++..|+++++|++.+.+ ....+.+ .|.++.|+.++.++ +..+++.|+|+|
T Consensus       612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~AL  689 (810)
T 3now_A          612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE-DEETATACAGAL  689 (810)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHH
Confidence            88788889999999999999999999999999999999998554 4455554 78999999999998 999999999999


Q ss_pred             HHhhcCCHHHHHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC---CHH
Q 043950          303 SNITAGNREQIQAVID-AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV---DPK  378 (458)
Q Consensus       303 ~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~  378 (458)
                      +|++.+++...+.+++ .|+++.|++++.+++.+++..|+|++.|++.. +.+....+.+.|+++.|.++++.+   +++
T Consensus       690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~  768 (810)
T 3now_A          690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAK  768 (810)
T ss_dssp             HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHH
T ss_pred             HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHH
Confidence            9999988889999998 89999999999999999999999999999884 578899999999999999999755   789


Q ss_pred             HHHHHHHHHHHHHHhchhh
Q 043950          379 IVTVCLEGLENILKVGEAE  397 (458)
Q Consensus       379 v~~~~~~~l~~l~~~~~~~  397 (458)
                      +++.++.+|.++.+++.-.
T Consensus       769 i~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          769 AREVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhCCCcc
Confidence            9999999999999876654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=9e-39  Score=311.17  Aligned_cols=378  Identities=25%  Similarity=0.338  Sum_probs=334.3

Q ss_pred             CCChhhHhhccHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 043950           14 PSLNLQTKLEILPAMVAGVWSDD-NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALT   92 (458)
Q Consensus        14 ~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~   92 (458)
                      ++.......|.+|.|+++|.+++ +.++..|+++|.+++.+. .+....+++.|+++.|+.++.+++ ++++..|+++|+
T Consensus       108 ~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~  185 (528)
T 4b8j_A          108 PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALG  185 (528)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred             chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence            44445566799999999999887 999999999999998865 677888899999999999999988 899999999999


Q ss_pred             HHcCCChhhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHH
Q 043950           93 NIASGTSMNTNVVIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRI  171 (458)
Q Consensus        93 ~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~  171 (458)
                      +++.+++..+..+...|+++.|+.++ .+.++.++..++|+|++++...+... .....++++.++.++ .+.++.++..
T Consensus       186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL-~~~~~~v~~~  263 (528)
T 4b8j_A          186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLI-HSNDEEVLTD  263 (528)
T ss_dssp             HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHT-TCCCHHHHHH
T ss_pred             HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHH-CCCCHHHHHH
Confidence            99998888999999999999999999 56889999999999999998765433 334578999999999 7788999999


Q ss_pred             HHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-Cc
Q 043950          172 ATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SP  249 (458)
Q Consensus       172 a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~  249 (458)
                      ++|+|.+++...+.. ......++++.++.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++ ++
T Consensus       264 a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  343 (528)
T 4b8j_A          264 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK  343 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcH
Confidence            999999999765322 2223368999999999999999999999999999988888888899999999999999998 89


Q ss_pred             cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHH
Q 043950          250 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNV  328 (458)
Q Consensus       250 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~l  328 (458)
                      .++..|+++|+|++..++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ +++...++++.|+++.|+.+
T Consensus       344 ~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l  422 (528)
T 4b8j_A          344 SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL  422 (528)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999998888888899999999999999998 999999999999999984 78899999999999999999


Q ss_pred             hccCChhhHHHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950          329 LQDAEFDIKKEAALAIANATVRGTH----------EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       329 l~~~~~~~~~~a~~~L~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      +...+++++..++++|.+++..+..          .+...+.+.|+++.|..+..+++++++..+.+++.+++..++.
T Consensus       423 L~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~  500 (528)
T 4b8j_A          423 LICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED  500 (528)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999999999875422          3577788899999999999999999999999999999876544

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=5e-38  Score=306.58  Aligned_cols=404  Identities=18%  Similarity=0.184  Sum_probs=343.1

Q ss_pred             hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950           19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT   98 (458)
Q Consensus        19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~   98 (458)
                      ....|.+|.++++++++++.++..|+++|.+++... ......+.+.|+++.|++++.+++ ++++..++.+|.+++.++
T Consensus        97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~  174 (529)
T 1jdh_A           97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCC
Confidence            344589999999999999999999999999998875 456777888999999999999988 899999999999999988


Q ss_pred             hhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950           99 SMNTNVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS  177 (458)
Q Consensus        99 ~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~  177 (458)
                      ++.+..+.+.|+++.|+.++.++ ....+..+..+|.+++.. +..+..+.+.|+++.++..+ .+.++.++..++|++.
T Consensus       175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~  252 (529)
T 1jdh_A          175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLR  252 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHH
Confidence            99999999999999999999864 456777889999999864 55678888899999999999 5668899999999999


Q ss_pred             HhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhH
Q 043950          178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPA  255 (458)
Q Consensus       178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a  255 (458)
                      +++...+..  ....+++|.++.++.+++++++..+++++++++..+++....+.+.|+++.|++++.+  +++.++..|
T Consensus       253 ~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a  330 (529)
T 1jdh_A          253 NLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA  330 (529)
T ss_dssp             HHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHH
Confidence            999876332  2346899999999999999999999999999998877778889999999999999976  346899999


Q ss_pred             HHHHhHhhcCChh---hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC
Q 043950          256 LWTVGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA  332 (458)
Q Consensus       256 ~~~l~~l~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~  332 (458)
                      +++|++++..++.   ....+.+.|+++.++.+|.++.++.++..++|+++|++.+. .....+.+.|+++.|++++.++
T Consensus       331 ~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L~~ll~~~  409 (529)
T 1jdh_A          331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRA  409 (529)
T ss_dssp             HHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHHHHHHHHH
Confidence            9999999886543   35677789999999999998834699999999999999865 4457888999999999999988


Q ss_pred             ChhhHHHHHHHHHH----------------------hhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950          333 EFDIKKEAALAIAN----------------------ATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI  390 (458)
Q Consensus       333 ~~~~~~~a~~~L~~----------------------l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l  390 (458)
                      +++++.+|+|++.|                      ++.  +.+....+.+.|+++.|+.++.+++++++..+.+++.++
T Consensus       410 ~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l  487 (529)
T 1jdh_A          410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL  487 (529)
T ss_dssp             HHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHH
Confidence            88888877766665                      443  345567788999999999999999999999999999998


Q ss_pred             HHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950          391 LKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY  445 (458)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  445 (458)
                      ... +             .+...+.+.|+++.|..++++++++|+..|.+++.++
T Consensus       488 ~~~-~-------------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          488 AQD-K-------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             TTS-H-------------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             hcC-H-------------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            743 1             2478888999999999999999999999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=9.2e-39  Score=303.13  Aligned_cols=367  Identities=17%  Similarity=0.197  Sum_probs=309.2

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhH
Q 043950           67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNL  146 (458)
Q Consensus        67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  146 (458)
                      .+|.|+++|++++ ++++..|+++|.+++.+++..+..+++.|++|.|+++|.++++.++..|+++|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5899999999998 899999999999999877788889999999999999999999999999999999999987888999


Q ss_pred             HhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc--------C--------CChHHH
Q 043950          147 VLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH--------L--------DDEEVL  210 (458)
Q Consensus       147 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~--------~--------~~~~~~  210 (458)
                      +.+.|+++.++.++..++++++++.++|+|+|++.... .......+++|.|+.++.        +        .+..+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH-hHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            99999999999999547889999999999999999843 333333499999999993        2        246677


Q ss_pred             HHHHHHHHHhccCChhhHHHHHHh-CcHHHHHHHhCC------CCccchhhHHHHHhHhhcCC-----------------
Q 043950          211 SDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVELLGH------PSPSVLTPALWTVGNIVMGD-----------------  266 (458)
Q Consensus       211 ~~~~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~l~~l~~~~-----------------  266 (458)
                      ..++|+|+|++.. ++..+.+.+. |+++.|+.++.+      .+..+++.++.++.+++...                 
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            7999999999977 6677778887 999999999985      45678888999999886311                 


Q ss_pred             ---------------------------------hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH--
Q 043950          267 ---------------------------------DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE--  311 (458)
Q Consensus       267 ---------------------------------~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~--  311 (458)
                                                       +...+.+++.++++.++.+|.++.++.+++.|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                             112234456678899999998876789999999999999985432  


Q ss_pred             -HH-HHHH-HcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC------HHHHHH
Q 043950          312 -QI-QAVI-DAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD------PKIVTV  382 (458)
Q Consensus       312 -~~-~~l~-~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~------~~v~~~  382 (458)
                       .. +..+ +.|++|.|+++|.+++.+++++|+|+|.|++.+.   ....++..|+++.|++++...+      +++...
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~---~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP---LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG---GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH---HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             22 3344 6899999999999999999999999999998742   3344566789999999998764      368889


Q ss_pred             HHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC-ChHHHHHHHHHHHHhcCCCCCC
Q 043950          383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD-NNGIREKAVKILETYWCGRVVG  452 (458)
Q Consensus       383 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~~~  452 (458)
                      ++++|.+++.....             ....+.+.|+++.|.+|+.++ ++++++.|.++|.+||...+..
T Consensus       397 ~l~~l~ni~~~~~~-------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHHhcCHH-------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence            99999999865443             478888999999999999999 9999999999999999887754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.1e-38  Score=302.88  Aligned_cols=368  Identities=26%  Similarity=0.348  Sum_probs=325.8

Q ss_pred             ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           23 EILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        23 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      +.+|.+++.++++ ++.++..|+++|.+++... .+....+++.|+++.|++++++++ ++++..|+++|++++.++++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            7899999999988 8999999999999998865 566777888999999999999988 899999999999999988889


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950          102 TNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l  179 (458)
                      +..+++.|+++.|+.++.+ .+..++..++++|++++.+. +..+... ..++++.++..+ .+.++.++..++|++.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999995 78999999999999999765 4433333 368999999999 677889999999999999


Q ss_pred             hcCCCC-CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950          180 CKGKPQ-PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT  258 (458)
Q Consensus       180 ~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  258 (458)
                      +...+. .......+++|.++.++.++++.++..+++++++++...+...+.+.+.|+++.++.++.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            986422 2222336899999999999999999999999999998888777778889999999999999999999999999


Q ss_pred             HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhH
Q 043950          259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIK  337 (458)
Q Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~  337 (458)
                      |++++.+++...+.+++.++++.++.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|++++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888888899999999999998 999999999999999974 77888889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950          338 KEAALAIANATVRGTH----------EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       338 ~~a~~~L~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      ..++++|.+++..+..          .....+.+.|+++.|..++.+++++++..+..+|.+++..++
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999999999875432          245677888999999999999999999999999999996544

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=8.8e-39  Score=297.58  Aligned_cols=372  Identities=18%  Similarity=0.192  Sum_probs=296.6

Q ss_pred             hhhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC-----------HHHHH
Q 043950           17 NLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY-----------PQLQY   85 (458)
Q Consensus        17 ~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-----------~~i~~   85 (458)
                      ....+.+.++.+++.+.+.|+.   ...+.|..+...  .+....+++.|.+|.|+++|+..+.           ++++.
T Consensus        26 ~~~~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~  100 (458)
T 3nmz_A           26 HLGTKVEMVYSLLSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARA  100 (458)
T ss_dssp             -------------------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHH
T ss_pred             ccCchHHHHHHHHHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHH
Confidence            4566777899999999988877   356667676553  4555789999999999999997542           69999


Q ss_pred             HHHHHHHHHcCCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhcCCC
Q 043950           86 EAAWALTNIASGTSMNTNVVIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAADSP  141 (458)
Q Consensus        86 ~a~~~L~~l~~~~~~~~~~~~~~~~i----------~~L~~ll~~~~--~~-----~~~-------~a~~~L~~l~~~~~  141 (458)
                      .|+|+|.|++.+.++......+.+++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +
T Consensus       101 ~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~  179 (458)
T 3nmz_A          101 RASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-E  179 (458)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-H
T ss_pred             HHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-H
Confidence            99999999999888888887777777          66677776542  22     444       899999999766 7


Q ss_pred             chhhHHhhhCCHHHHHHHhcc----------cccHHHHHHHHHHHHHhhcCCCCCChhh--hhhhHHHHHHhhcCCChHH
Q 043950          142 GCRNLVLREEALIPLLAQLNE----------HAKLSMLRIATWTLSKLCKGKPQPPFDQ--VRPALPALAQLIHLDDEEV  209 (458)
Q Consensus       142 ~~~~~~~~~~~l~~l~~~l~~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~~  209 (458)
                      .+|+.+.+.|++++|+.++..          +.++.+++.++|+|.||+.+.+......  ..+++|.|+.+|.++++++
T Consensus       180 e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v  259 (458)
T 3nmz_A          180 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL  259 (458)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHH
Confidence            889999999999999999942          2356789999999999998763222222  3567999999999999999


Q ss_pred             HHHHHHHHHHhccC-ChhhHHHHHHhCcHHHHHHHh-CCCCccchhhHHHHHhHhhcCChhhHHHHH-hcCChHHHHHHh
Q 043950          210 LSDACWTLSYLSYG-TNDKIQVVIEAGVCRRLVELL-GHPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALL  286 (458)
Q Consensus       210 ~~~~~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll  286 (458)
                      ++.++++|+|++.. ++.....+.+.|+++.|+++| .+.+..+++.|+.+|+||+..+++....+. ..|+++.|+.+|
T Consensus       260 ~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL  339 (458)
T 3nmz_A          260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL  339 (458)
T ss_dssp             HHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh
Confidence            99999999999975 456677788999999999975 556788999999999999986655555665 789999999999


Q ss_pred             ccCChh---hHHHHHHHHHHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 043950          287 IHNHKK---SIKKVACWTISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLV  360 (458)
Q Consensus       287 ~~~~~~---~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~  360 (458)
                      .++.+.   .+++.|+|+|.|++.   +++++.+.+.+.|+++.|+.+|.+++.+++++|+++|.|++.. ++++...+.
T Consensus       340 ~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~  418 (458)
T 3nmz_A          340 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALW  418 (458)
T ss_dssp             TCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence            987332   499999999999997   7889999999999999999999999999999999999999864 678889999


Q ss_pred             HCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950          361 REGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       361 ~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      +.|+++.|++++.+.++.+++.+.++|.+++...+
T Consensus       419 ~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          419 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999999997653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=9.9e-38  Score=306.31  Aligned_cols=407  Identities=15%  Similarity=0.121  Sum_probs=336.1

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-
Q 043950           21 KLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS-   99 (458)
Q Consensus        21 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~-   99 (458)
                      ..|.+|.++.++.++++.++..|++++.+++++  ...++.+.+.|+ +.|+.++++++ +.++..|+.+|++++.... 
T Consensus       288 ~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~  363 (810)
T 3now_A          288 REGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQ  363 (810)
T ss_dssp             TTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTT
T ss_pred             ccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhcccccc
Confidence            558999999999999999999999999998665  677888888875 99999999887 8999999999999975221 


Q ss_pred             hhHHHHHhCC----ChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950          100 MNTNVVIDHG----AVPIFVKLLASP--SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT  173 (458)
Q Consensus       100 ~~~~~~~~~~----~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~  173 (458)
                      +.....++.|    +++.++++|.++  ++++++.|+|+|++++.+.+.....+.+.|+++.|+.++ .+.++.++..++
T Consensus       364 d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al  442 (810)
T 3now_A          364 DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVV  442 (810)
T ss_dssp             TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHH
T ss_pred             CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHH
Confidence            2222233333    367788888887  889999999999999877665555555789999999999 567888999999


Q ss_pred             HHHHHhhcCCCCC---------------------------------ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950          174 WTLSKLCKGKPQP---------------------------------PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL  220 (458)
Q Consensus       174 ~~l~~l~~~~~~~---------------------------------~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l  220 (458)
                      |+|.|++...+..                                 ......|++|.++.++.++++.+++.++|+|+|+
T Consensus       443 ~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NL  522 (810)
T 3now_A          443 TTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV  522 (810)
T ss_dssp             HHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999854211                                 1122368999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHH-HHHhcCChHHHHHHhccCChhhHHHHH
Q 043950          221 SYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQ-CIINHGAVPCLLALLIHNHKKSIKKVA  298 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~-~~~~~~~~~~l~~ll~~~~~~~v~~~a  298 (458)
                      +. +.+....+++.|+++.|+.++.++++..++.|+++|++++...+ ...- .....+++++|+.+|.++.+...+..|
T Consensus       523 A~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eA  601 (810)
T 3now_A          523 CG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFES  601 (810)
T ss_dssp             HT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHH
T ss_pred             cC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHH
Confidence            95 45577789999999999999999988999999999999987533 2210 001135899999999865334456789


Q ss_pred             HHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH-CCChHHHHhhccCCCH
Q 043950          299 CWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR-EGCIKPLCDLLLCVDP  377 (458)
Q Consensus       299 ~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~  377 (458)
                      +|+|+|++.++++..+.+++.|+++.|+.++.++++.++..|+++++|++.+  ++....+.+ .|.++.|+.++++++.
T Consensus       602 l~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~  679 (810)
T 3now_A          602 LMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDE  679 (810)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSH
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCH
Confidence            9999999998888899999999999999999999999999999999999974  355555565 6899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHh-cchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950          378 KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE-DEGFKKIEGLKSHDNNGIREKAVKILETYWCG  448 (458)
Q Consensus       378 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  448 (458)
                      .++..++++|.++....+..             ...+.+ .|+++.|..|+.+++++++..|.+.+.++...
T Consensus       680 ~vq~~Aa~ALanLt~~s~~~-------------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          680 ETATACAGALAIITSVSVKC-------------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHHHHHHHHHHHHHHHCHHH-------------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCHHH-------------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            99999999999998743332             344445 89999999999999999999999999998764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=7.2e-39  Score=303.87  Aligned_cols=362  Identities=16%  Similarity=0.175  Sum_probs=303.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .+|.++++|+++++.++..|+++|++++..+ +.....+.+.|++|.|+++|++++ ++++..|+++|.|++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999999999999999999997653 455668999999999999999988 89999999999999997799999


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc--------c-------ccHH
Q 043950          104 VVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--------H-------AKLS  167 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------~-------~~~~  167 (458)
                      .+++.|++|.|+++|. ++++++++.++|+|+|++.+ +..+..+.+ |+++.|+.++..        .       .++.
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 78999999999999999988 667887888 999999999931        1       3567


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhh-h-hhHHHHHHhhcC------CChHHHHHHHHHHHHhccC----------------
Q 043950          168 MLRIATWTLSKLCKGKPQPPFDQV-R-PALPALAQLIHL------DDEEVLSDACWTLSYLSYG----------------  223 (458)
Q Consensus       168 ~~~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~----------------  223 (458)
                      +++.++|+|+||+.. +....... . |+++.|+.++++      .+..+++.+++++.+++..                
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            888999999999987 33222223 3 999999999985      4667888888889888621                


Q ss_pred             ----------------------------------ChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCChh
Q 043950          224 ----------------------------------TNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDDF  268 (458)
Q Consensus       224 ----------------------------------~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~  268 (458)
                                                        .+...+.+++.|+++.++.+|.+. ++.+++.|+|+|+|++.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                              011223455677889999999764 578999999999999987654


Q ss_pred             hH----HHHH-hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCCh------hhH
Q 043950          269 QT----QCII-NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEF------DIK  337 (458)
Q Consensus       269 ~~----~~~~-~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~------~~~  337 (458)
                      ..    +..+ +.|+++.|+++|.++ +.++++.|+|+|+|++.+.  ....++..|+++.|+++|...++      ++.
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~  394 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence            32    3344 689999999999999 9999999999999999753  34556667899999999988643      688


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhc
Q 043950          338 KEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV-DPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       338 ~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~~~~l~~l~~~~  394 (458)
                      ..++++|.+++... .+....+.+.|+++.|++++.+. ++++++.|.++|.+++...
T Consensus       395 ~~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          395 SSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            89999999998764 47788888999999999999999 9999999999999998643

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=302.63  Aligned_cols=406  Identities=18%  Similarity=0.173  Sum_probs=346.4

Q ss_pred             HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950           20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ...|.+|.|+++|+++++.++..|+++|.+++... ......+.+.|+++.|++++++++ +.++..++.+|.+++..++
T Consensus        95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~  172 (644)
T 2z6h_A           95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQ  172 (644)
T ss_dssp             HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCH
T ss_pred             HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCc
Confidence            34578999999999999999999999999998875 566777889999999999999988 7899999999999998789


Q ss_pred             hhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950          100 MNTNVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK  178 (458)
Q Consensus       100 ~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~  178 (458)
                      +.+..+.+.|+++.|+.++.+. ...++..++.+|.+++.. +..+..+.+.|+++.++.++ .+.++.+++.++|+|.+
T Consensus       173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~n  250 (644)
T 2z6h_A          173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRN  250 (644)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence            9999999999999999999875 467889999999999864 55678888999999999999 56688999999999999


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC--ccchhhHH
Q 043950          179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS--PSVLTPAL  256 (458)
Q Consensus       179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~  256 (458)
                      ++...+.  .....++++.++.++.+.+++++..++++|++++..++...+.+.+.|+++.|+.++.+.+  +.++..|+
T Consensus       251 L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~  328 (644)
T 2z6h_A          251 LSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI  328 (644)
T ss_dssp             HGGGCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             Hhhcchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHH
Confidence            9987533  2344689999999999999999999999999999887777888999999999999998732  68999999


Q ss_pred             HHHhHhhcCChh---hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950          257 WTVGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE  333 (458)
Q Consensus       257 ~~l~~l~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~  333 (458)
                      ++|++++..+++   ....+.+.++++.|+++|.++.++.+++.|+|+|+|++.+.. ....+.+.|+++.|++++.+.+
T Consensus       329 ~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~  407 (644)
T 2z6h_A          329 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAH  407 (644)
T ss_dssp             HHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccc
Confidence            999999875442   334477889999999999987446999999999999998653 4478889999999999998754


Q ss_pred             h----------------------hhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950          334 F----------------------DIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL  391 (458)
Q Consensus       334 ~----------------------~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~  391 (458)
                      .                      +++..++.+|.+++.  +......+.+.|+++.|+.++.+.+++++..+.++|.++.
T Consensus       408 ~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~  485 (644)
T 2z6h_A          408 QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  485 (644)
T ss_dssp             HHHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             hhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3                      455667777777775  3456677889999999999999999999999999999987


Q ss_pred             HhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950          392 KVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG  448 (458)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  448 (458)
                      .. +             .++..+.+.|+++.|..++.+++++++..|.++|.++...
T Consensus       486 ~~-~-------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~  528 (644)
T 2z6h_A          486 QD-K-------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED  528 (644)
T ss_dssp             TS-H-------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             cC-H-------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence            53 1             1478889999999999999999999987766666555443

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.4e-37  Score=292.89  Aligned_cols=366  Identities=19%  Similarity=0.201  Sum_probs=302.7

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-Chh
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG-TSM  100 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-~~~  100 (458)
                      .+.+|.++++|.++++.+|..|+++|.+++... .+....+.+.|+||.|+++|.+++ +++++.|+++|.|++.+ +++
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHH
Confidence            457999999999999999999999999998764 678889999999999999999998 89999999999999985 689


Q ss_pred             hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-----------------c
Q 043950          101 NTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-----------------E  162 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-----------------~  162 (458)
                      ++..+++.|+|+.|+.+|.+ .+.++++.++++|+||+.. +..+..+.+ ++++.|+.++.                 .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence            99999999999999999997 6789999999999999885 455666664 67999999762                 1


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCChhhh--hhhHHHHHHhhcC------CChHHHHHHHHHHHHhccCCh---------
Q 043950          163 HAKLSMLRIATWTLSKLCKGKPQPPFDQV--RPALPALAQLIHL------DDEEVLSDACWTLSYLSYGTN---------  225 (458)
Q Consensus       163 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~~~---------  225 (458)
                      ..++.++.+++++|.||+...+.....+.  .++++.|+.++++      .+...++.++++|.|++....         
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~  282 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY  282 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred             cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence            23578999999999999987533222222  6778899999874      467899999999999985421         


Q ss_pred             ----------------hhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHHHhHhhcCChhh---HH-HHHhcCChHHHHH
Q 043950          226 ----------------DKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQ---TQ-CIINHGAVPCLLA  284 (458)
Q Consensus       226 ----------------~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~---~~-~~~~~~~~~~l~~  284 (458)
                                      ...+.+.+.++++.++.++. +.++.+++.|+++|.||+.+....   .+ .+.+.++++.|++
T Consensus       283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~  362 (584)
T 3l6x_A          283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD  362 (584)
T ss_dssp             -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred             hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence                            11122334466788899996 457889999999999999865322   22 3446789999999


Q ss_pred             HhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--------ChhhHHHHHHHHHHhhcCCCHHHH
Q 043950          285 LLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--------EFDIKKEAALAIANATVRGTHEQI  356 (458)
Q Consensus       285 ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--------~~~~~~~a~~~L~~l~~~~~~~~~  356 (458)
                      +|.++ +..+++.|+|+|+|++.+.. . +..+..|+++.|+.+|.+.        +.+++..|+++|.|++.. +.++.
T Consensus       363 LL~s~-~~~v~~~A~~aL~nLs~~~~-~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~  438 (584)
T 3l6x_A          363 LLTNE-HERVVKAASGALRNLAVDAR-N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAA  438 (584)
T ss_dssp             GGGCS-CHHHHHHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred             HHcCC-CHHHHHHHHHHHHHHhCChh-H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHH
Confidence            99999 89999999999999998542 2 3345778999999999876        357889999999999875 67889


Q ss_pred             HHHHHCCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhch
Q 043950          357 KYLVREGCIKPLCDLLLCV--DPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       357 ~~l~~~~~l~~L~~ll~~~--~~~v~~~~~~~l~~l~~~~~  395 (458)
                      +.+.+.|+++.|+.++.+.  .+.+++.|.++|.++..+.+
T Consensus       439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            9999999999999999875  78999999999999986443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.4e-35  Score=298.93  Aligned_cols=408  Identities=18%  Similarity=0.176  Sum_probs=350.1

Q ss_pred             HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950           20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ...|.+|.|+++|+++++.++..|+++|.+++... ......+.+.|+++.|++++.+++ ..++..++.+|.+++..++
T Consensus       231 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~  308 (780)
T 2z6g_A          231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQ  308 (780)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCH
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCh
Confidence            34589999999999999999999999999998874 566777778999999999999987 8999999999999998889


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950          100 MNTNVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK  178 (458)
Q Consensus       100 ~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~  178 (458)
                      +.+..+.+.|+++.|+.++++.+ ...+..++.+|.+++.. +..+..+.+.|+++.|+.++ .+.++.+++.++|+|.+
T Consensus       309 e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~  386 (780)
T 2z6g_A          309 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRN  386 (780)
T ss_dssp             HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence            99999999999999999998754 55667889999999965 45677888899999999999 56688899999999999


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-C-ccchhhHH
Q 043950          179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-S-PSVLTPAL  256 (458)
Q Consensus       179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~-~~~~~~a~  256 (458)
                      ++...+.  .....++++.++.++.+.++.++..++++|++++..++.....+.+.|+++.|+.++.+. + +.++..|+
T Consensus       387 L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al  464 (780)
T 2z6g_A          387 LSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI  464 (780)
T ss_dssp             HHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             Hhccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHH
Confidence            9987533  233478999999999999999999999999999988877788889999999999999863 3 38999999


Q ss_pred             HHHhHhhcCChhh---HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950          257 WTVGNIVMGDDFQ---TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE  333 (458)
Q Consensus       257 ~~l~~l~~~~~~~---~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~  333 (458)
                      ++|++++..+++.   ...+...++++.|+.+|.++.++.+++.|+|+|+|++.+. .....+.+.|+++.|++++.+.+
T Consensus       465 ~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~  543 (780)
T 2z6g_A          465 CALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAH  543 (780)
T ss_dssp             HHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcc
Confidence            9999998765442   3467788999999999998834599999999999999754 55578889999999999997654


Q ss_pred             ----------------------hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950          334 ----------------------FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL  391 (458)
Q Consensus       334 ----------------------~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~  391 (458)
                                            .+++..++.+|.+++.  +......+.+.|+++.|+.++.+.++.++..+..+|.++.
T Consensus       544 ~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          544 QDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             HHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence                                  3456677888888875  4566777889999999999999999999999999999997


Q ss_pred             HhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCC
Q 043950          392 KVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRV  450 (458)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  450 (458)
                      ...              .++..+.+.|+++.|..++++++++|+..|.++|.++....+
T Consensus       622 ~~~--------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          622 QDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             TSH--------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             cCH--------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            431              247888999999999999999999999999999888877554

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=289.39  Aligned_cols=343  Identities=16%  Similarity=0.151  Sum_probs=284.8

Q ss_pred             cccCCCCCCCCC-hhhHhhccHHHHHHhhcCC------------CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCH---
Q 043950            5 QRFLPSAPRPSL-NLQTKLEILPAMVAGVWSD------------DNSLQLEATTQFRILLSIERSPRIEDVIQAGVV---   68 (458)
Q Consensus         5 ~~~~~~~~~~~~-~~~~~~~~i~~l~~~l~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i---   68 (458)
                      |+++.-...++. ..+++.|.+|.|+++|+..            ++++++.|+|+|.+++++. ++......+.+++   
T Consensus        51 ~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l  129 (458)
T 3nmz_A           51 RTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLL  129 (458)
T ss_dssp             HHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHH
Confidence            344443444443 5678899999999999963            3799999999999999987 6666776777777   


Q ss_pred             -------HHHHHhhcCCC-CHH-----HHH-------HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--------
Q 043950           69 -------PRFVEFLMRED-YPQ-----LQY-------EAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--------  120 (458)
Q Consensus        69 -------~~L~~ll~~~~-~~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--------  120 (458)
                             +.+++++.+.. ..+     +++       +|+|+|.|++. ++++|+.+++.|+++.|+.++..        
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~  208 (458)
T 3nmz_A          130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLT  208 (458)
T ss_dssp             HHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccc
Confidence                   66777776642 112     444       99999999987 59999999999999999999942        


Q ss_pred             ---CCHHHHHHHHHHHHHhhcCCCchhhHHhh-hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC--CCCChhhhhhh
Q 043950          121 ---PSDDVREQAVWALGNVAADSPGCRNLVLR-EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK--PQPPFDQVRPA  194 (458)
Q Consensus       121 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~  194 (458)
                         .++.+++.|+|+|.|++.+++..+..+.. .|.++.|+.+| .+++++++..++|+|.+|+...  .........|+
T Consensus       209 ~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga  287 (458)
T 3nmz_A          209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS  287 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence               34778999999999999887766666644 56699999999 6888999999999999999752  12223334799


Q ss_pred             HHHHHHhh-cCCChHHHHHHHHHHHHhccCChhhHHHHH-HhCcHHHHHHHhCCCCcc----chhhHHHHHhHhhc---C
Q 043950          195 LPALAQLI-HLDDEEVLSDACWTLSYLSYGTNDKIQVVI-EAGVCRRLVELLGHPSPS----VLTPALWTVGNIVM---G  265 (458)
Q Consensus       195 l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~----~~~~a~~~l~~l~~---~  265 (458)
                      +|.|+.+| .+.+..+++.++.+++|++...++....+. ..|+++.|+.+|.+++..    +++.|+++|.|++.   .
T Consensus       288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~  367 (458)
T 3nmz_A          288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT  367 (458)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence            99999974 567899999999999999974544444455 789999999999987553    89999999999997   6


Q ss_pred             ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950          266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIA  345 (458)
Q Consensus       266 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~  345 (458)
                      +++..+.+.+.|+++.|+.+|.++ +..++++|+|+|+|++.+++++...+++.|+++.|++++.+++.++++.|+++|.
T Consensus       368 ~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~  446 (458)
T 3nmz_A          368 NEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR  446 (458)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            888888999999999999999998 8999999999999999888999999999999999999999999999999999999


Q ss_pred             HhhcCC
Q 043950          346 NATVRG  351 (458)
Q Consensus       346 ~l~~~~  351 (458)
                      |++.+.
T Consensus       447 nL~~~~  452 (458)
T 3nmz_A          447 NLMANR  452 (458)
T ss_dssp             HHHTCC
T ss_pred             HHHcCC
Confidence            999864

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=6.6e-36  Score=284.11  Aligned_cols=368  Identities=18%  Similarity=0.215  Sum_probs=303.5

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCc
Q 043950           64 QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD-SPG  142 (458)
Q Consensus        64 ~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~  142 (458)
                      ..+.++.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+||.|+.+|.++++.+++.|+++|.||+.. ++.
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4578999999999988 89999999999999988899999999999999999999999999999999999999985 577


Q ss_pred             hhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------------------C
Q 043950          143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH------------------L  204 (458)
Q Consensus       143 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~------------------~  204 (458)
                      .+..+.+.|++++|+.+|....+.++++.++++|++|+... ........+++|.|+.++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            89999999999999999965578889999999999999864 3333444778999998772                  2


Q ss_pred             CChHHHHHHHHHHHHhccCChhhHHHHHHh-CcHHHHHHHhCC------CCccchhhHHHHHhHhhcCChh---------
Q 043950          205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVELLGH------PSPSVLTPALWTVGNIVMGDDF---------  268 (458)
Q Consensus       205 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~l~~l~~~~~~---------  268 (458)
                      .+..+++.+.++|.|++..+++..+.+.+. |+++.|+.++.+      .+...++.|+++|.||+.....         
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            367999999999999998777656667764 667899999864      4567889999999999865211         


Q ss_pred             ----------------hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH---HHHHHH-HHcCChHHHHHH
Q 043950          269 ----------------QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR---EQIQAV-IDAGLIVPLVNV  328 (458)
Q Consensus       269 ----------------~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~---~~~~~l-~~~~~~~~L~~l  328 (458)
                                      ....+++.++++.++.+|....++.+++.|+|+|.|++.+..   ...+.. .+.++++.|+++
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                            111222335577889999755478999999999999987542   223333 356889999999


Q ss_pred             hccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--------CHHHHHHHHHHHHHHHHhchhhccc
Q 043950          329 LQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV--------DPKIVTVCLEGLENILKVGEAEKNT  400 (458)
Q Consensus       329 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~~~~~~~l~~l~~~~~~~~~~  400 (458)
                      |.+++.+++..|+++|.|++.+..  .. .++..|+++.|+.+|.+.        .++++..++++|.+++......   
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~--~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~---  437 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDAR--NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA---  437 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCS--CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH---
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChh--HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH---
Confidence            999999999999999999998653  22 334779999999999875        3678889999999998654442   


Q ss_pred             CCCCCchhHHHHHHHhcchHHHHHhhhcCC--ChHHHHHHHHHHHHhcCCC
Q 043950          401 GSTIGDVNQYARLVEEDEGFKKIEGLKSHD--NNGIREKAVKILETYWCGR  449 (458)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~  449 (458)
                                ...+.+.|++..|.+++.+.  .+.+++.|.++|.++|...
T Consensus       438 ----------~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          438 ----------AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             ----------HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             ----------HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence                      67788999999999998775  8999999999999998654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.6e-35  Score=287.44  Aligned_cols=405  Identities=16%  Similarity=0.141  Sum_probs=339.1

Q ss_pred             hccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950           22 LEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM  100 (458)
Q Consensus        22 ~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  100 (458)
                      .|.++.+++.|.+ +++.++..|+.+|.+++..  .+....+.+.|+++.|++++++++ ++++..|+++|.+++.+++.
T Consensus        58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~  134 (529)
T 1jdh_A           58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG  134 (529)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcc
Confidence            4789999999975 5899999999999999665  567888999999999999999988 89999999999999997677


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      .+..+.+.|+++.|+.++.+++.+++..++.+|.+++..++..+..+.+.|+++.++..+....+...+..++.++.+++
T Consensus       135 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  214 (529)
T 1jdh_A          135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  214 (529)
T ss_dssp             HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence            88888889999999999999999999999999999998888888888899999999999976666778888999999999


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                      ............++++.++.++.++++.++..+++++.+++...+...   ...++++.|++++.++++.++..|+++|+
T Consensus       215 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  291 (529)
T 1jdh_A          215 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILS  291 (529)
T ss_dssp             TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            764433333447899999999999999999999999999996654321   12478999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhhcCCHH---HHHHHHHcCChHHHHHHhccCC-hh
Q 043950          261 NIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNRE---QIQAVIDAGLIVPLVNVLQDAE-FD  335 (458)
Q Consensus       261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~ll~~~~-~~  335 (458)
                      +++..+++....+.+.|+++.++.++.+.. ++.++..|+++|+|++.++++   ....+.+.|+++.|++++.+++ ..
T Consensus       292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~  371 (529)
T 1jdh_A          292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP  371 (529)
T ss_dssp             HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchH
Confidence            999988888888999999999999998641 378999999999999875322   4567889999999999999876 59


Q ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHH----------------------HHHh
Q 043950          336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLEN----------------------ILKV  393 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~----------------------l~~~  393 (458)
                      ++..+++++.|++...  .....+.+.|+++.|+.++.+.+++++..+.|++.+                      +...
T Consensus       372 v~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~  449 (529)
T 1jdh_A          372 LIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD  449 (529)
T ss_dssp             HHHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC
Confidence            9999999999999753  334678899999999999988777777766655554                      3321


Q ss_pred             chhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950          394 GEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG  448 (458)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  448 (458)
                      .              ..+..+.+.|+++.|..+..+++++++..|.+.+.++..+
T Consensus       450 ~--------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~  490 (529)
T 1jdh_A          450 V--------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             H--------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             c--------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence            1              1256678899999999999999999999999998887643

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=285.76  Aligned_cols=405  Identities=17%  Similarity=0.155  Sum_probs=344.1

Q ss_pred             hccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950           22 LEILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM  100 (458)
Q Consensus        22 ~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  100 (458)
                      .+.++.+++.|.++ ++.++..|+.+|.+++..  .+....+.+.|+++.|++++++++ +.++..|+++|.+++...+.
T Consensus        55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~  131 (644)
T 2z6h_A           55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEG  131 (644)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTT
T ss_pred             cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcch
Confidence            37799999999865 899999999999998665  457888889999999999999988 89999999999999987677


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      .+..+.+.|+++.|+.++.++++.++..++.+|.+++...+..+..+.+.|+++.++.++........+..++.+|.+++
T Consensus       132 ~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs  211 (644)
T 2z6h_A          132 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  211 (644)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence            88888899999999999999999999999999999998777788888899999999999976666778899999999999


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                      ............++++.++.++.+.+..++..++++|.+++......   ....++++.|++++.++++.++..|+++|+
T Consensus       212 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~  288 (644)
T 2z6h_A          212 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILS  288 (644)
T ss_dssp             TCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            76544444444789999999999999999999999999999654332   112378999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCCh-hhHHHHHHHHHHHhhcCCH--HH-HHHHHHcCChHHHHHHhccCC-hh
Q 043950          261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHK-KSIKKVACWTISNITAGNR--EQ-IQAVIDAGLIVPLVNVLQDAE-FD  335 (458)
Q Consensus       261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~~v~~~a~~~l~nl~~~~~--~~-~~~l~~~~~~~~L~~ll~~~~-~~  335 (458)
                      +++..++.....+.+.|+++.|+.++.+..+ +.++..|+++|+|++..++  +. ...+.+.|+++.|+++|.+.+ ..
T Consensus       289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~  368 (644)
T 2z6h_A          289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP  368 (644)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchH
Confidence            9999888888889999999999999987523 7999999999999997432  23 334778899999999999875 69


Q ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHh
Q 043950          336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD----------------------PKIVTVCLEGLENILKV  393 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~v~~~~~~~l~~l~~~  393 (458)
                      +++.|+++|.|++...  .....+.+.|+++.|+.++.+.+                      ++++..++.+|.+++..
T Consensus       369 v~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~  446 (644)
T 2z6h_A          369 LIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD  446 (644)
T ss_dssp             HHHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence            9999999999998753  33477889999999999988643                      45666777777777754


Q ss_pred             chhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950          394 GEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG  448 (458)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  448 (458)
                      ..              .+..+.+.|+++.|..++.+++++++..|.+.+.++...
T Consensus       447 ~~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          447 VH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             HH--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HH--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            32              266778999999999999999999999999998887653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.2e-33  Score=284.80  Aligned_cols=404  Identities=17%  Similarity=0.156  Sum_probs=341.5

Q ss_pred             hccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950           22 LEILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM  100 (458)
Q Consensus        22 ~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  100 (458)
                      .+.++.|++.|.++ ++.++..|+.+|.+++..  ..+...+.+.|+++.|+++|++++ +.++..|+++|.+++...++
T Consensus       191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~  267 (780)
T 2z6g_A          191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEG  267 (780)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTT
T ss_pred             cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChh
Confidence            36799999999854 899999999999998665  466778889999999999999998 89999999999999997778


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      .+..+.+.|+++.|+.++.+++..++..++.+|.+++..++..+..+.+.|+++.++.++...........++.++.+++
T Consensus       268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls  347 (780)
T 2z6g_A          268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  347 (780)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence            88888899999999999999999999999999999998777788888888999999999976666667788899999999


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                      ............++++.++.++.+.+..++..+++++.+++......   ....++++.|+.++.++++.++..|+++|+
T Consensus       348 ~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~  424 (780)
T 2z6g_A          348 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILS  424 (780)
T ss_dssp             TSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            76433333344789999999999999999999999999999655432   122468999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCCh-hhHHHHHHHHHHHhhcCCHH---HHHHHHHcCChHHHHHHhccCCh-h
Q 043950          261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHK-KSIKKVACWTISNITAGNRE---QIQAVIDAGLIVPLVNVLQDAEF-D  335 (458)
Q Consensus       261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~ll~~~~~-~  335 (458)
                      +|+..++.....+.+.|+++.|+.+|.+..+ ..++..|+++|+|++..+++   ....+.+.|+++.|++++.+++. .
T Consensus       425 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~  504 (780)
T 2z6g_A          425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP  504 (780)
T ss_dssp             HHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHH
Confidence            9999888888889999999999999987423 38999999999999874332   23467789999999999998765 9


Q ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHh
Q 043950          336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD----------------------PKIVTVCLEGLENILKV  393 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~v~~~~~~~l~~l~~~  393 (458)
                      ++..|+++|+|++..  ......+.+.|+++.|+.++.+.+                      ++++..++.+|.++...
T Consensus       505 v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~  582 (780)
T 2z6g_A          505 LIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD  582 (780)
T ss_dssp             HHHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence            999999999999973  344577889999999999997643                      34666777788877642


Q ss_pred             chhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          394 GEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      . .             .+..+.+.|+++.|..++.+++++++..|...+.++..
T Consensus       583 ~-~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  622 (780)
T 2z6g_A          583 I-H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  622 (780)
T ss_dssp             H-H-------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             h-h-------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            1 1             25677899999999999999999999999998887754

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.98  E-value=4.8e-31  Score=238.72  Aligned_cols=269  Identities=19%  Similarity=0.166  Sum_probs=232.7

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhcCCCchhhHHhh
Q 043950           81 PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAADSPGCRNLVLR  149 (458)
Q Consensus        81 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  149 (458)
                      ...+..|+++|.|++.+ +++|+.+++.|+++.|+.+|.+           .++.+++.|+|+|.|++.+++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35566899999999994 8999999999999999999952           24789999999999999887766666644


Q ss_pred             -hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCCh
Q 043950          150 -EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK--PQPPFDQVRPALPALAQLI-HLDDEEVLSDACWTLSYLSYGTN  225 (458)
Q Consensus       150 -~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~  225 (458)
                       .|.++.|+.++ .+++++++..++|+|.+|+...  .........|++|.|+.+| .+.+.++++.++.+|+|++...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             45699999999 6888999999999999999852  2223333479999999974 66789999999999999997565


Q ss_pred             hhHHHHH-HhCcHHHHHHHhCCCCc----cchhhHHHHHhHhhc---CChhhHHHHHhcCChHHHHHHhccCChhhHHHH
Q 043950          226 DKIQVVI-EAGVCRRLVELLGHPSP----SVLTPALWTVGNIVM---GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKV  297 (458)
Q Consensus       226 ~~~~~~~-~~~~i~~L~~ll~~~~~----~~~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~  297 (458)
                      +....+. ..|+++.|+++|.++++    .+++.|+++|.|++.   .+++.++.+.+.|+++.|+.+|.++ +..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            5445455 78999999999998654    389999999999997   6888888899999999999999998 8999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950          298 ACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT  352 (458)
Q Consensus       298 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  352 (458)
                      |+|+|+|++.+++++.+.+.+.|+++.|++++.+++.++++.|+++|.|++.+..
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999998888999999999999999999999999999999999999998754

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=3.7e-31  Score=239.46  Aligned_cols=273  Identities=19%  Similarity=0.151  Sum_probs=236.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC----------CCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950           37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE----------DYPQLQYEAAWALTNIASGTSMNTNVVI  106 (458)
Q Consensus        37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~  106 (458)
                      ...+..|+++|.+++.+  ++.++.+++.|+++.|+.+|..+          ..++++..|+++|.|++.++++.+..+.
T Consensus        46 ~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34556899999999665  68899999999999999999521          1267999999999999997777887776


Q ss_pred             hC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC-
Q 043950          107 DH-GAVPIFVKLLASPSDDVREQAVWALGNVAAD-SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-  183 (458)
Q Consensus       107 ~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-  183 (458)
                      .. |.+|.|+.+|.++++++++.++|+|.||+.. ++..+..+.+.|+++.|+.++..+.++.+++.++++|++|+... 
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            54 5599999999999999999999999999975 55678889999999999998767778899999999999999854 


Q ss_pred             CCCChhh-hhhhHHHHHHhhcCCCh----HHHHHHHHHHHHhcc---CChhhHHHHHHhCcHHHHHHHhCCCCccchhhH
Q 043950          184 PQPPFDQ-VRPALPALAQLIHLDDE----EVLSDACWTLSYLSY---GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA  255 (458)
Q Consensus       184 ~~~~~~~-~~~~l~~l~~ll~~~~~----~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a  255 (458)
                      ....... ..|++|.|+.++.+.++    ++++.++++|.|++.   ..++..+.+.+.|+++.|+.+|.+++..+++.|
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A  283 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA  283 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence            2222233 47999999999987654    599999999999996   567777889999999999999999999999999


Q ss_pred             HHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH
Q 043950          256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ  312 (458)
Q Consensus       256 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  312 (458)
                      +++|+|++..+++....+.+.|+++.|+.++.++ +..+++.|+|+|.|++.+++..
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence            9999999988888999999999999999999998 9999999999999999865443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1.6e-27  Score=209.06  Aligned_cols=240  Identities=26%  Similarity=0.382  Sum_probs=220.8

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      |.++.|+++|.+++ ++++..|+++|.+++...++.+..+++.|+++.|+.++.++++.++..++++|++++.+.+..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999999 89999999999999998888999999999999999999999999999999999999998888889


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC-CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ-PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT  224 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  224 (458)
                      .+.+.|+++.++..+ .++++.++..++|+|.+++...+. .......++++.++.++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 678899999999999999965432 223334789999999999999999999999999999888


Q ss_pred             hhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950          225 NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN  304 (458)
Q Consensus       225 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n  304 (458)
                      +...+.+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.+++.|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            87778899999999999999999999999999999999998888888999999999999999998 89999999999999


Q ss_pred             hhcC
Q 043950          305 ITAG  308 (458)
Q Consensus       305 l~~~  308 (458)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9863

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=2.9e-27  Score=207.40  Aligned_cols=242  Identities=26%  Similarity=0.336  Sum_probs=221.5

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +.+|.+++.|+++++.++..|+++|.+++... .+....+.+.|+++.|++++++++ ++++..|+++|++++.++++.+
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~   79 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI   79 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence            67899999999999999999999999998875 467888999999999999999998 8999999999999999779999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      ..+.+.|+++.|+.++.++++.++..++++|++++...+..+..+.+.|+++.++..+ .++++.++..++++|.+++..
T Consensus        80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG  158 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988888888889999999999999 677899999999999999986


Q ss_pred             CCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950          183 KPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN  261 (458)
Q Consensus       183 ~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~  261 (458)
                      .+.. ......++++.++.++.++++.++..++++|++++..++...+.+.+.|+++.|++++.++++.++..|+++|++
T Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN  238 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            5332 233348899999999999999999999999999998788888889999999999999999999999999999999


Q ss_pred             hhcCCh
Q 043950          262 IVMGDD  267 (458)
Q Consensus       262 l~~~~~  267 (458)
                      ++...+
T Consensus       239 l~~~~~  244 (252)
T 4hxt_A          239 IKSGGW  244 (252)
T ss_dssp             HHHTCB
T ss_pred             HHcCCC
Confidence            987554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1.2e-27  Score=209.63  Aligned_cols=239  Identities=33%  Similarity=0.515  Sum_probs=218.5

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      ...+.++++|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.++.++++.++..++++|++++.+.+..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            46899999999999 79999999999887665778888999999999999999999999999999999999998888888


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT  224 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  224 (458)
                      .+.+.|+++.++.++ .++++.++..++|+|.+++...+.. ......+++|.++.++.++++.++..++++|++++..+
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678999999999999999876444 34445789999999999999999999999999999888


Q ss_pred             hhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950          225 NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN  304 (458)
Q Consensus       225 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n  304 (458)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.++..|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999988888888899999999999999998 99999999999999


Q ss_pred             hhc
Q 043950          305 ITA  307 (458)
Q Consensus       305 l~~  307 (458)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=2.4e-27  Score=207.82  Aligned_cols=238  Identities=35%  Similarity=0.523  Sum_probs=215.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .++.+++.|+++++.++..|+++|+++++.. .+....+.+.|+++.|++++++++ ++++..|+++|++++.++++.+.
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            4889999999999999999999999887763 677888999999999999999998 89999999999999998899999


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                      .+++.|+++.|+.++.++++.+++.++++|++++.+.+.....+.+.|+++.++.++ .++++.++..++|+|.+++...
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999887765447788999999999999 6778999999999999999865


Q ss_pred             CCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950          184 PQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI  262 (458)
Q Consensus       184 ~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l  262 (458)
                      +... .....++++.++.++.++++.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..|+++|+++
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            3222 223378999999999999999999999999999988888888899999999999999999999999999999999


Q ss_pred             hc
Q 043950          263 VM  264 (458)
Q Consensus       263 ~~  264 (458)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            75

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.94  E-value=1.3e-25  Score=197.82  Aligned_cols=236  Identities=16%  Similarity=0.115  Sum_probs=197.1

Q ss_pred             hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH-HhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHH
Q 043950          207 EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE-LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLAL  285 (458)
Q Consensus       207 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l  285 (458)
                      .+-+..++..|.+++...+ ....+...|+++.++. +|.++++.++..|+|+|++++..++...+.+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4567788899999986544 5666888999999999 9999999999999999999999999999999999999999999


Q ss_pred             hccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCCh
Q 043950          286 LIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCI  365 (458)
Q Consensus       286 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l  365 (458)
                      |+++++..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..|+|+|.+++.+ +++.+..+.+.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            99644789999999999999999888888999999999999999999999999999999999986 56788899999999


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC-ChHHHHHHHHHHHH
Q 043950          366 KPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD-NNGIREKAVKILET  444 (458)
Q Consensus       366 ~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~  444 (458)
                      +.|+.++.+++++++..++.+|.+++...+.....+.  .....+...+++     .+..++.++ +.++++++..++++
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~  284 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT  284 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987443211000  011224455533     355666565 78999999999999


Q ss_pred             hcCCCCC
Q 043950          445 YWCGRVV  451 (458)
Q Consensus       445 ~~~~~~~  451 (458)
                      ||..+++
T Consensus       285 ~f~~~~~  291 (296)
T 1xqr_A          285 CFSSPAD  291 (296)
T ss_dssp             HCC----
T ss_pred             HcCCCCC
Confidence            9976654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-24  Score=209.72  Aligned_cols=389  Identities=13%  Similarity=0.088  Sum_probs=296.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      ..++.|.+.+++  ..++..|+-.|+++....+... ..+.  ...+.+.+.+.+++ .+.+..|++.|..++. .++.+
T Consensus       296 ~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VK  368 (778)
T 3opb_A          296 NYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-INLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVK  368 (778)
T ss_dssp             HHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-CCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHH
T ss_pred             hHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-CcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHH
Confidence            457788888865  4788899999999876542211 1111  25678888888877 5669999999999998 68888


Q ss_pred             HHHHhC-CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCc--------------------------------------
Q 043950          103 NVVIDH-GAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPG--------------------------------------  142 (458)
Q Consensus       103 ~~~~~~-~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~--------------------------------------  142 (458)
                      ..+.+. +.++.|+.++++ .+..+...++.+|.|++.+.+.                                      
T Consensus       369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~  448 (778)
T 3opb_A          369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF  448 (778)
T ss_dssp             HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence            888765 669999999985 6778899999999999974431                                      


Q ss_pred             hhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChH---HHHHHHHHHHH
Q 043950          143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEE---VLSDACWTLSY  219 (458)
Q Consensus       143 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~---~~~~~~~~l~~  219 (458)
                      .+..+.+.|+++.|+.++ .+.++.++..++|++.+++.+...+......|+++.|+.++.+....   .+..|+.+|.+
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr  527 (778)
T 3opb_A          449 NEKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR  527 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            234567889999999998 77889999999999999998765555566689999999999877544   89999999999


Q ss_pred             hccCChhhHHHHH---HhCcHHHHHHHhCC-CCcc-------------chhhHHHHHhHhhcCC----hhhHHHHHhc-C
Q 043950          220 LSYGTNDKIQVVI---EAGVCRRLVELLGH-PSPS-------------VLTPALWTVGNIVMGD----DFQTQCIINH-G  277 (458)
Q Consensus       220 l~~~~~~~~~~~~---~~~~i~~L~~ll~~-~~~~-------------~~~~a~~~l~~l~~~~----~~~~~~~~~~-~  277 (458)
                      +....+... .+-   ..|+++.|+.+|.. +...             -+..|+.+|.||+..+    ++.+..++.. |
T Consensus       528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g  606 (778)
T 3opb_A          528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV  606 (778)
T ss_dssp             HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred             HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence            984433221 111   13899999999983 2211             1668999999999876    2445667775 8


Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH-HHHHHc------CChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950          278 AVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI-QAVIDA------GLIVPLVNVLQDAEFDIKKEAALAIANATVR  350 (458)
Q Consensus       278 ~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~------~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~  350 (458)
                      +++.+..++.++ +..+|+.|+++++|++.+ ++.+ +.+.+.      +-++.|+.++..+|.++|..|.++|++++..
T Consensus       607 a~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~  684 (778)
T 3opb_A          607 YWSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT  684 (778)
T ss_dssp             HHHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence            999999999998 889999999999999974 3433 233321      2378999999999999999999999999753


Q ss_pred             CCHHHHHHHHHC-CChHHHHhhccC--CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh
Q 043950          351 GTHEQIKYLVRE-GCIKPLCDLLLC--VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK  427 (458)
Q Consensus       351 ~~~~~~~~l~~~-~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  427 (458)
                       .+..+..+.+. ++++.++.+++.  ++++++.+++.++.+++.+.....       +...+.....+...++.+..++
T Consensus       685 -~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~l  756 (778)
T 3opb_A          685 -IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG-------TNEVYPLLQENQKLKDALNMSL  756 (778)
T ss_dssp             -CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT-------TTSCCHHHHSCHHHHHHHHHHH
T ss_pred             -ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC-------ChHHHHHHhcChHHHHHHHHHH
Confidence             45666777776 799999999998  899999999999999998543321       1222455555666777777775


Q ss_pred             cCC
Q 043950          428 SHD  430 (458)
Q Consensus       428 ~~~  430 (458)
                      .++
T Consensus       757 k~~  759 (778)
T 3opb_A          757 KRG  759 (778)
T ss_dssp             SSS
T ss_pred             hCC
Confidence            443

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-23  Score=202.74  Aligned_cols=399  Identities=13%  Similarity=0.097  Sum_probs=297.6

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      -|..+.+.+.++++.......++..+.+.++.+  ...+..+..+.++.|.+++++   .+++..|+-+|..+.......
T Consensus       254 e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~  328 (778)
T 3opb_A          254 KGLSKLFKKRVFEEQDLQFTKELLRLLSSACID--ETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLT  328 (778)
T ss_dssp             TTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCT
T ss_pred             ccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCC
Confidence            355677777776544343444555555556763  455666677888999999965   478999999999988733221


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh-hhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL-REEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      ...+.  ...+.+.+++.+++.+-++.|++.|+.++.+. ..++.+. +.+.+..|+..+....+..+..-++.++.|++
T Consensus       329 ~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt  405 (778)
T 3opb_A          329 CINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS  405 (778)
T ss_dssp             TCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred             cCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence            11111  24577888888777667999999999997654 4555554 45669999999965567788899999999999


Q ss_pred             cCCCCCCh-------------------------------------h--hhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950          181 KGKPQPPF-------------------------------------D--QVRPALPALAQLIHLDDEEVLSDACWTLSYLS  221 (458)
Q Consensus       181 ~~~~~~~~-------------------------------------~--~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  221 (458)
                      ...+....                                     .  ...|++|.|+.++.++++.+++.+++++.+++
T Consensus       406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS  485 (778)
T 3opb_A          406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT  485 (778)
T ss_dssp             CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            86532100                                     0  11688999999999999999999999999999


Q ss_pred             cCChhhHHHHHHhCcHHHHHHHhCCCCcc---chhhHHHHHhHhhcCC-hhhHHHHHh----cCChHHHHHHhccCChh-
Q 043950          222 YGTNDKIQVVIEAGVCRRLVELLGHPSPS---VLTPALWTVGNIVMGD-DFQTQCIIN----HGAVPCLLALLIHNHKK-  292 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---~~~~a~~~l~~l~~~~-~~~~~~~~~----~~~~~~l~~ll~~~~~~-  292 (458)
                      .. ......+++.|+++.|+.++.+....   .+..|+.+|.+++... +..   ++.    .+++++|+.+|..++.. 
T Consensus       486 ~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~---~f~~~~~~~aI~pLv~LL~~~~~~~  561 (778)
T 3opb_A          486 RS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL---IFKKYSALNAIPFLFELLPRSTPVD  561 (778)
T ss_dssp             TS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH---HSSSSCSTTHHHHHHHTSCCSSSCS
T ss_pred             CC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH---HcCCCccccchHHHHHHcCCCCCcc
Confidence            65 55666689999999999999987544   7999999999998533 332   221    38899999999831121 


Q ss_pred             ------------hHHHHHHHHHHHhhcCC----HHHHHHHHHc-CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHH
Q 043950          293 ------------SIKKVACWTISNITAGN----REQIQAVIDA-GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQ  355 (458)
Q Consensus       293 ------------~v~~~a~~~l~nl~~~~----~~~~~~l~~~-~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  355 (458)
                                  .-+.+|+.+|.|++..+    ++.+..++.. |+++.|..++.+++..++..|+++++|++...  +.
T Consensus       562 ~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~  639 (778)
T 3opb_A          562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LT  639 (778)
T ss_dssp             SCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GG
T ss_pred             cccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HH
Confidence                        23779999999999864    3456778885 99999999999999999999999999999742  32


Q ss_pred             H-HHHHHC------CChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHh-cchHHHHHhhh
Q 043950          356 I-KYLVRE------GCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE-DEGFKKIEGLK  427 (458)
Q Consensus       356 ~-~~l~~~------~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~  427 (458)
                      + ..+.+.      +.++.|+.+++..+.+++..|.++|.++....+..             +..+.+ .++++.+..+.
T Consensus       640 i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-------------a~~ll~~~~gi~~Ll~lL  706 (778)
T 3opb_A          640 IAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-------------AKELLTKKELIENAIQVF  706 (778)
T ss_dssp             TGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-------------HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-------------HHHHHHccccHHHHHHHH
Confidence            2 222221      23788999999999999999999999996544432             344444 48999999987


Q ss_pred             cC--CChHHHHHHHHHHHHhcC
Q 043950          428 SH--DNNGIREKAVKILETYWC  447 (458)
Q Consensus       428 ~~--~~~~v~~~a~~~l~~~~~  447 (458)
                      .+  ++++++.++..++.++++
T Consensus       707 ~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          707 ADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHT
T ss_pred             hccCCCHHHHHHHHHHHHHHHH
Confidence            77  899999999999999986

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=1.9e-23  Score=177.50  Aligned_cols=199  Identities=36%  Similarity=0.529  Sum_probs=185.3

Q ss_pred             hhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhH
Q 043950          191 VRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT  270 (458)
Q Consensus       191 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~  270 (458)
                      ..+..+.+..+++++++.++..++++|.+++..++.....+.+.|+++.|+++|.++++.++..|+++|++++..++...
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            36778899999999999999999999999998888888889999999999999999999999999999999998888888


Q ss_pred             HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950          271 QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR  350 (458)
Q Consensus       271 ~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~  350 (458)
                      ..+++.|+++.++.+|.++ ++.++..|+|+|+|++.++++....+.+.|+++.|++++.+++.+++..|+++|.+++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999 999999999999999998888888999999999999999999999999999999999985


Q ss_pred             CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950          351 GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL  391 (458)
Q Consensus       351 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~  391 (458)
                       +++....+.+.|+++.|..++.+++++++..++++|.++.
T Consensus       169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence             4677788899999999999999999999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=4.7e-23  Score=175.04  Aligned_cols=199  Identities=32%  Similarity=0.470  Sum_probs=180.0

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch
Q 043950           64 QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC  143 (458)
Q Consensus        64 ~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  143 (458)
                      ..+..+.|+.++.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4578999999999998 899999999999999878999999999999999999999999999999999999999888888


Q ss_pred             hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 043950          144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY  222 (458)
Q Consensus       144 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~  222 (458)
                      +..+.+.|+++.++..+ .++++.++..++|+|.+++...+.. ......++++.++.++.++++.++..++++|++++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            88899999999999999 7778999999999999999765322 223347899999999999999999999999999998


Q ss_pred             CChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950          223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM  264 (458)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~  264 (458)
                      .++.....+.+.|+++.|++++.++++.+++.|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            877788889999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=6.6e-23  Score=180.49  Aligned_cols=226  Identities=15%  Similarity=0.175  Sum_probs=186.2

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH-hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH
Q 043950          165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQ-LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL  243 (458)
Q Consensus       165 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l  243 (458)
                      +.+-+..++..|.+++...++.......|++|.++. +|.++++.++..++|+|++++.+++...+.+++.|+++.|+.+
T Consensus        53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            345677888889988886443333344789999999 9999999999999999999998888888889999999999999


Q ss_pred             hCC-CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCCh
Q 043950          244 LGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI  322 (458)
Q Consensus       244 l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~  322 (458)
                      |.+ ++..++..|+|+|++++++++...+.+.+.|+++.|+.+|+++ +..++..|+|+|++++.++++.+..+++.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence            986 4788999999999999998888888888999999999999998 99999999999999998888899999999999


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHC--CChHHH---Hhhcc-CC-CHHHHHHHHHHHHHHHH
Q 043950          323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVRE--GCIKPL---CDLLL-CV-DPKIVTVCLEGLENILK  392 (458)
Q Consensus       323 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~--~~l~~L---~~ll~-~~-~~~v~~~~~~~l~~l~~  392 (458)
                      +.|+.+|.+++.+++..|+++|.+++... +.........  .+...|   .+.++ .+ +.++.+.+..++.++|.
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~-~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDF-PQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTC-HHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCC-hhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999863 3322222111  111212   22233 22 46788888888888874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=4.5e-21  Score=161.17  Aligned_cols=197  Identities=18%  Similarity=0.139  Sum_probs=169.2

Q ss_pred             CHHHHHHhhcCCCCH--HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh
Q 043950           67 VVPRFVEFLMREDYP--QLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR  144 (458)
Q Consensus        67 ~i~~L~~ll~~~~~~--~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  144 (458)
                      .+|.|+++|.+++ +  +++..|++.+.+++..+++.+..+++.|++|.|+++|.++++++++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999988 6  889999999999998789999999999999999999999999999999999999999888889


Q ss_pred             hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----------------CCChH
Q 043950          145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH----------------LDDEE  208 (458)
Q Consensus       145 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----------------~~~~~  208 (458)
                      ..+.+.|++++|+.+|..+.+.++++.++.+|++|+..... ......+++|.|+.++.                ..+..
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999996567889999999999999976533 23344677888887653                13679


Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHHh-CcHHHHHHHhCC------CCccchhhHHHHHhHhhcC
Q 043950          209 VLSDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVELLGH------PSPSVLTPALWTVGNIVMG  265 (458)
Q Consensus       209 ~~~~~~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~l~~l~~~  265 (458)
                      +++.+..+|.|++..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776667767765 778999999875      2556789999999999863

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=4.2e-21  Score=161.36  Aligned_cols=196  Identities=18%  Similarity=0.179  Sum_probs=164.7

Q ss_pred             cHHHHHHhhcCCCH--HHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           24 ILPAMVAGVWSDDN--SLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        24 ~i~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      .+|.++++|.++++  +++..|++.+.+++..+ .+....+.+.|++|.|+++|++++ +++|+.|+++|.|++.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            58999999999988  89999999999997664 677888999999999999999988 899999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---------------cccc
Q 043950          102 TNVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---------------EHAK  165 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---------------~~~~  165 (458)
                      +..+.+.|++|.|+++|. +++.+++++++.+|+|++.... .+..+.+ +++++|+..+.               ...+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence            999999999999999998 5789999999999999987654 4555555 46888887652               0136


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCChhh--hhhhHHHHHHhhcC------CChHHHHHHHHHHHHhccC
Q 043950          166 LSMLRIATWTLSKLCKGKPQPPFDQ--VRPALPALAQLIHL------DDEEVLSDACWTLSYLSYG  223 (458)
Q Consensus       166 ~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~ll~~------~~~~~~~~~~~~l~~l~~~  223 (458)
                      ++++.++.++|.||+...+.....+  ..|+++.|+.+++.      .+...++.++.+|.|++..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            7899999999999998652333322  25788999999984      2678899999999999843

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.82  E-value=2.3e-18  Score=169.86  Aligned_cols=342  Identities=13%  Similarity=0.111  Sum_probs=245.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-hhh
Q 043950           67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG-CRN  145 (458)
Q Consensus        67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~  145 (458)
                      ++|.+.+++++++ ..+|..++.+|+.++.....   ......+++.+..+++++++.+|..++++|+.++...+. .+.
T Consensus       243 ~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~  318 (588)
T 1b3u_A          243 VMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             THHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence            5566666666665 56777777777766642111   112235678888999989999999999999999865432 111


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN  225 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  225 (458)
                      .......++.+...+ .++++.++..+++++..++.....  ......++|.+..++++++++++..++.++..+.....
T Consensus       319 ~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  395 (588)
T 1b3u_A          319 NVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC
Confidence            112234566666666 778899999999999998754211  12245688889999999999999999999888874332


Q ss_pred             hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950          226 DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI  305 (458)
Q Consensus       226 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl  305 (458)
                      ..   .....+++.+..++.++++.+|..++.+++.++......   .+...+++.+..++.++ +..+|..|+.+++.+
T Consensus       396 ~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l  468 (588)
T 1b3u_A          396 IR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKL  468 (588)
T ss_dssp             HH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHH
Confidence            11   122357888999999999999999999999987522111   11224678888889888 889999999999999


Q ss_pred             hcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHH
Q 043950          306 TAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCL  384 (458)
Q Consensus       306 ~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~  384 (458)
                      +.. .++    .....++|.+..++.+++..+|..++++++.++...+.+    .....+++.|..++++++++|+..++
T Consensus       469 ~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~  540 (588)
T 1b3u_A          469 VEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVA  540 (588)
T ss_dssp             HHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHH
Confidence            862 222    122358888988888889999999999999997642211    12345788999999999999999999


Q ss_pred             HHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          385 EGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       385 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      +++..++......            +.    ....+..|..+.++++++|+..|...+..+-
T Consensus       541 ~~l~~l~~~~~~~------------~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          541 KSLQKIGPILDNS------------TL----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHGGGSCHH------------HH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhchh------------hh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            9999998653221            11    1234667777889999999999999988764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.81  E-value=3.2e-18  Score=168.90  Aligned_cols=382  Identities=12%  Similarity=0.074  Sum_probs=285.3

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      ..+|.+.++++++++.+|..|+.+|..++...+.    ......++|.+..++++++ +.+|..|+.+|+.++...+.. 
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-  237 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-  237 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH-
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH-
Confidence            3466777777888999999999999999765321    1223467889999998888 899999999999987632221 


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                        .....+++.+..++.+++..+|..++.+|+.++...+.   .......++.++..+ .++++.++..+++++..++..
T Consensus       238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~  311 (588)
T 1b3u_A          238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHH
Confidence              12234688899999999999999999999999753221   112234677888888 678889999999999999876


Q ss_pred             CCCCCh--hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          183 KPQPPF--DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       183 ~~~~~~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                      .+....  .....++|.+..++++.++.++..++++++.++..-...   .....+++.+..+++++++.+|..++.+++
T Consensus       312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~  388 (588)
T 1b3u_A          312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLD  388 (588)
T ss_dssp             SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred             hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            533221  345788899999999999999999999999987432211   122347889999999988999999999998


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHH
Q 043950          261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKE  339 (458)
Q Consensus       261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~  339 (458)
                      .++......   .....+++.+..++.++ ++.+|..++.+++.++.. .++    .....+++.+...+.+.+..+|..
T Consensus       389 ~l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~  460 (588)
T 1b3u_A          389 CVNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREA  460 (588)
T ss_dssp             HHHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred             HHHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHH
Confidence            887533211   11235688888888887 899999999999998751 111    111236788888899989999999


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcch
Q 043950          340 AALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEG  419 (458)
Q Consensus       340 a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (458)
                      |+.+++.++.....+.    ....+++.|..++.+++..++..+++++..+.......           .+.     ...
T Consensus       461 a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~~-----~~~  520 (588)
T 1b3u_A          461 ATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------ITT-----KHM  520 (588)
T ss_dssp             HHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HHH-----HHT
T ss_pred             HHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HHH-----HHH
Confidence            9999999986533332    12357888888888899999999999999998753321           011     234


Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          420 FKKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       420 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      +..+..+.++++++|+..+.+.+..++.
T Consensus       521 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          521 LPTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence            6778888889999999999999988764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.81  E-value=1.2e-18  Score=179.13  Aligned_cols=358  Identities=13%  Similarity=0.102  Sum_probs=259.5

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      ...-+.+++.+.++++.+|..++.++..++..+....+     .++++.|++.+.+++ +.+++.++.+|+.++...+..
T Consensus        89 ~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~  162 (852)
T 4fdd_A           89 DFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEI  162 (852)
T ss_dssp             HHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            34456778888888999999999999999876422222     257899999999988 899999999999998743332


Q ss_pred             HHHHH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950          102 TNVVI----DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS  177 (458)
Q Consensus       102 ~~~~~----~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~  177 (458)
                      ...-.    -..+++.+++++.++++.+|..|++++.++....+..... .-.+.++.++..+ .++++.++..+++++.
T Consensus       163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~  240 (852)
T 4fdd_A          163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA-GDEEPEVRKNVCRALV  240 (852)
T ss_dssp             HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH-TCCCHHHHHHHHHHHH
T ss_pred             hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence            11100    1135677778888899999999999999887654321100 0113566677766 6788999999999999


Q ss_pred             HhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHH---hCcHHHHHHHh----------
Q 043950          178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIE---AGVCRRLVELL----------  244 (458)
Q Consensus       178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~i~~L~~ll----------  244 (458)
                      .++...+........++++.+...+.+.++.++..++.++..++..... .. ...   ..+++.++..+          
T Consensus       241 ~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~-~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~  318 (852)
T 4fdd_A          241 MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC-KD-VLVRHLPKLIPVLVNGMKYSDIDIILL  318 (852)
T ss_dssp             HHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH-HH-HHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH-HH-HHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence            9998654332333467888888899999999999999999999865421 11 111   14567777776          


Q ss_pred             -CC-----------CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH
Q 043950          245 -GH-----------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ  312 (458)
Q Consensus       245 -~~-----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  312 (458)
                       .+           .++.++..|..+++.++...++..   + ..+++.+...+.++ ++.+|..|++++++++.+..+.
T Consensus       319 ~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~---~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~  393 (852)
T 4fdd_A          319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDEL---L-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQG  393 (852)
T ss_dssp             HC------------CCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHH
T ss_pred             cCCcccccccccccccchHHHHHHHHHHHHHHhccHHH---H-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHH
Confidence             33           345678899999999986444321   1 24678888888888 9999999999999999877665


Q ss_pred             HHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 043950          313 IQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILK  392 (458)
Q Consensus       313 ~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~  392 (458)
                      ..... .++++.++..+.++++.+|..+++++++++.......... .-.++++.|+..+.++++.++..+++++.++++
T Consensus       394 ~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          394 MIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            44333 3578999999999999999999999999986311100000 112357778888888899999999999999987


Q ss_pred             hchh
Q 043950          393 VGEA  396 (458)
Q Consensus       393 ~~~~  396 (458)
                      ....
T Consensus       472 ~~~~  475 (852)
T 4fdd_A          472 EACT  475 (852)
T ss_dssp             HHGG
T ss_pred             HhhH
Confidence            6543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.80  E-value=7.3e-18  Score=173.19  Aligned_cols=393  Identities=13%  Similarity=0.100  Sum_probs=275.2

Q ss_pred             HHHHHhh---cCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           26 PAMVAGV---WSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        26 ~~l~~~l---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +.+...+   .+.++.+|..|+..|.+..... -.....-....+-+.+++.+.+++ +.+|..++.+++.++...... 
T Consensus        48 ~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~-  124 (852)
T 4fdd_A           48 NYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ-  124 (852)
T ss_dssp             HHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT-
T ss_pred             HHHHHHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc-
Confidence            3444444   4677899999999999887642 111111123345677788888877 899999999999998742110 


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh----hhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL----REEALIPLLAQLNEHAKLSMLRIATWTLSK  178 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~  178 (458)
                         .-.+.++.|+..+.++++.+++.++.+|+.++.+.+.....-.    -...++.++..+ .++++.++..+++++..
T Consensus       125 ---~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~  200 (852)
T 4fdd_A          125 ---NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQ  200 (852)
T ss_dssp             ---TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHT
T ss_pred             ---ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence               0135689999999999999999999999999865443211000    112455555555 57788999999999998


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950          179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT  258 (458)
Q Consensus       179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  258 (458)
                      +....+.........+++.+..++.++++.++..+++++..++...++......+ ++++.+...+.+.++.++..|+.+
T Consensus       201 ~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~  279 (852)
T 4fdd_A          201 FIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEF  279 (852)
T ss_dssp             TTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHH
Confidence            8865432222233578888999999999999999999999999766544332232 478888999999999999999999


Q ss_pred             HhHhhcCChhhHHHHHh---cCChHHHHHHh-----------cc--C--------ChhhHHHHHHHHHHHhhcCCHHHHH
Q 043950          259 VGNIVMGDDFQTQCIIN---HGAVPCLLALL-----------IH--N--------HKKSIKKVACWTISNITAGNREQIQ  314 (458)
Q Consensus       259 l~~l~~~~~~~~~~~~~---~~~~~~l~~ll-----------~~--~--------~~~~v~~~a~~~l~nl~~~~~~~~~  314 (458)
                      +..++.... . ...+.   ..+++.++..+           .+  +        .+..+|+.|+.++..++...++   
T Consensus       280 l~~l~~~~~-~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---  354 (852)
T 4fdd_A          280 WLTLAEQPI-C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---  354 (852)
T ss_dssp             HHHHTTSTT-H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---
T ss_pred             HHHHhcchh-H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---
Confidence            999886431 1 12221   13456666665           22  0        1345789999999998853211   


Q ss_pred             HHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Q 043950          315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       315 ~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~  394 (458)
                      .+.. .+++.+...+.+.+..+|..|++++++++.+.......+  -.++++.+...++++++.|+..++++++++....
T Consensus       355 ~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  431 (852)
T 4fdd_A          355 ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV  431 (852)
T ss_dssp             GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred             HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            1122 367788888888899999999999999998654322221  2346889999999999999999999999998764


Q ss_pred             hhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          395 EAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      ....        ...+..     +.+..|...+.+++++++..|.+.+.++.+
T Consensus       432 ~~~~--------~~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          432 VSQP--------PDTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HHSC--------TTTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             ccch--------HHHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            4321        111122     235677777778899999999999988764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.79  E-value=1.8e-15  Score=142.46  Aligned_cols=420  Identities=14%  Similarity=0.121  Sum_probs=300.7

Q ss_pred             hHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCc----------------cHHHH-HHcCCHHHHHHhhcCCC
Q 043950           19 QTKLEILPAMVAGVWS--DDNSLQLEATTQFRILLSIERSP----------------RIEDV-IQAGVVPRFVEFLMRED   79 (458)
Q Consensus        19 ~~~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~-~~~~~i~~L~~ll~~~~   79 (458)
                      ..-..+++.++..|+.  +|.++...++..|.++.+.+..+                ..+.+ .+.+.++.|+.+|++.+
T Consensus        56 ~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d  135 (651)
T 3grl_A           56 EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD  135 (651)
T ss_dssp             HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC
T ss_pred             HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc
Confidence            3345679999999995  57888889999999887754221                11222 34578999999999888


Q ss_pred             CHHHHHHHHHHHHHHcCCChh-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHH
Q 043950           80 YPQLQYEAAWALTNIASGTSM-NTNVVIDH-GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLL  157 (458)
Q Consensus        80 ~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~  157 (458)
                       -.+|..++.+|..++...++ ..+.+... ++++.|+.+|.+..+.+|..++..|.+++.++++.++.+.-.|+++.++
T Consensus       136 -f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf  214 (651)
T 3grl_A          136 -FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLL  214 (651)
T ss_dssp             -HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHH
Confidence             79999999999999987777 66777754 8999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccc---cHHHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHHHHhhcCCChH------HHHH---HHHHHHHhccC-
Q 043950          158 AQLNEHA---KLSMLRIATWTLSKLCKGKPQPPF-DQVRPALPALAQLIHLDDEE------VLSD---ACWTLSYLSYG-  223 (458)
Q Consensus       158 ~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~------~~~~---~~~~l~~l~~~-  223 (458)
                      ..+...+   ...+...|+.++.+|.+.++..+. ....+++|.+..+++.+++.      ....   ++.++.-++.. 
T Consensus       215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~  294 (651)
T 3grl_A          215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN  294 (651)
T ss_dssp             HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence            9996432   346889999999999998643333 33378899999998754321      2222   55666666643 


Q ss_pred             -----ChhhHHHHHHhCcHHHHHHHhCCC--CccchhhHHHHHhHhhcCChhhHHHHHhcC---------ChHHHHHHhc
Q 043950          224 -----TNDKIQVVIEAGVCRRLVELLGHP--SPSVLTPALWTVGNIVMGDDFQTQCIINHG---------AVPCLLALLI  287 (458)
Q Consensus       224 -----~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~---------~~~~l~~ll~  287 (458)
                           .......+.+.|+++.+++++..+  ...++..|+.+++.+.++++.....+.+..         ++..++.++.
T Consensus       295 ~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~  374 (651)
T 3grl_A          295 NPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVN  374 (651)
T ss_dssp             SCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhc
Confidence                 223456688999999999999875  567889999999999999988877766432         3444555566


Q ss_pred             cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHc----------CCh---HHHHHHhccCChhhHHHHHHHHHHhhcCCCHH
Q 043950          288 HNHKKSIKKVACWTISNITAGNREQIQAVIDA----------GLI---VPLVNVLQDAEFDIKKEAALAIANATVRGTHE  354 (458)
Q Consensus       288 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~----------~~~---~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  354 (458)
                      +.....+|.+|+.++..+..++++....+...          ..+   ..+...+.+.|+.-.-.|+.++.++... +++
T Consensus       375 ~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~  453 (651)
T 3grl_A          375 ERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NAT  453 (651)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHH
T ss_pred             ccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHH
Confidence            66568999999999999998886554444431          111   1344555555665445588888888875 334


Q ss_pred             HHHHHHH--------C---CChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHH
Q 043950          355 QIKYLVR--------E---GCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKK  422 (458)
Q Consensus       355 ~~~~l~~--------~---~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (458)
                      ....+.+        +   -.++.+...+. ..++.+...-+-.|...+-..+.            ....++.+...+..
T Consensus       454 ~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~------------AV~dFL~~~s~l~~  521 (651)
T 3grl_A          454 QKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI------------AVTHFLHNSANVPF  521 (651)
T ss_dssp             HHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHSTTHHHH
T ss_pred             HHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH------------HHHHHHcCCchHHH
Confidence            3333333        1   12445555554 34566666666666666654443            34677777767888


Q ss_pred             HHhhhcC-CC---hHHHHHHHHHHHHhcCCCCCC
Q 043950          423 IEGLKSH-DN---NGIREKAVKILETYWCGRVVG  452 (458)
Q Consensus       423 l~~l~~~-~~---~~v~~~a~~~l~~~~~~~~~~  452 (458)
                      |.....+ .+   .-|+-.+.-++--+|+..+.+
T Consensus       522 L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~  555 (651)
T 3grl_A          522 LTGQIAENLGEEEQLVQGLCALLLGISIYFNDNS  555 (651)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence            8866433 22   347888898888887766655

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.77  E-value=9e-16  Score=150.38  Aligned_cols=341  Identities=16%  Similarity=0.165  Sum_probs=247.3

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .++.+++++++++..++..+..++..++... ++..     .-+++.+.+-+++++ +.+|..|+++|+++..  ++...
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~-----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~  120 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMA-----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITE  120 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHH-----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHH-----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHH
Confidence            4677888888889988888888888775532 1111     235788888899988 8999999999999864  45444


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                      .+     ++.+..++.++++.+|..|++++.+++...|+.   +.+.+.++.+..++ .++++.++..|+++|..++...
T Consensus       121 ~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          121 YL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             HH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence            33     578999999999999999999999998766553   23345677888888 7889999999999999999876


Q ss_pred             CCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950          184 PQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI  262 (458)
Q Consensus       184 ~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l  262 (458)
                      +.. ........++.++..+...++..+..++.++..++...+...     ..+++.+..++++.++.++..|++++..+
T Consensus       192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            533 334446677788888888888899999999988875544322     34678888899999999999999999998


Q ss_pred             hcC---ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH-----------------HH-----HHHH
Q 043950          263 VMG---DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE-----------------QI-----QAVI  317 (458)
Q Consensus       263 ~~~---~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-----------------~~-----~~l~  317 (458)
                      ...   +++..+.+. ..+.+.++.++. + ++.+|..|+.+++.++...++                 .+     ..+.
T Consensus       267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~  343 (591)
T 2vgl_B          267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI  343 (591)
T ss_dssp             CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred             hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence            742   333333322 245566665553 5 677888888777777641110                 00     1111


Q ss_pred             ---Hc----CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950          318 ---DA----GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI  390 (458)
Q Consensus       318 ---~~----~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l  390 (458)
                         +.    .+++.|...+.+.+.+++..++++++.++....... .     .+++.|.+++....+.++..++.++..+
T Consensus       344 ~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i  417 (591)
T 2vgl_B          344 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-E-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI  417 (591)
T ss_dssp             HTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-H-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence               11    245566677777889999999999999987643222 2     2478888888888888888888888888


Q ss_pred             HHhchh
Q 043950          391 LKVGEA  396 (458)
Q Consensus       391 ~~~~~~  396 (458)
                      +...+.
T Consensus       418 i~~~p~  423 (591)
T 2vgl_B          418 FRKYPN  423 (591)
T ss_dssp             HHHSCS
T ss_pred             HHHCcc
Confidence            765443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.77  E-value=2.2e-16  Score=148.48  Aligned_cols=327  Identities=15%  Similarity=0.132  Sum_probs=253.7

Q ss_pred             HhhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCC
Q 043950           20 TKLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-DYPQLQYEAAWALTNIASG   97 (458)
Q Consensus        20 ~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~~~   97 (458)
                      ...++++.|...+.+ .-.+-|+.|+..|..++..     .+.-+..++++.|+..|+.. ++.++...++.+|.++...
T Consensus        18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~   92 (651)
T 3grl_A           18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN   92 (651)
T ss_dssp             CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred             ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            345678999998885 4588999999999999543     22334567899999999764 4478888999999887663


Q ss_pred             Chh-----------------hHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc-hhhHHhhh-CCHHHHH
Q 043950           98 TSM-----------------NTNVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG-CRNLVLRE-EALIPLL  157 (458)
Q Consensus        98 ~~~-----------------~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~-~~l~~l~  157 (458)
                      .++                 ..+.+. +.+.++.|+.+|++.+..+|..++.+|..++...+. .++.+... ++++.|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            322                 222333 457899999999999999999999999999988876 67777744 8999999


Q ss_pred             HHhcccccHHHHHHHHHHHHHhhcCCCCCChhhh-hhhHHHHHHhhcCCC----hHHHHHHHHHHHHhccCChhhHHHHH
Q 043950          158 AQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV-RPALPALAQLIHLDD----EEVLSDACWTLSYLSYGTNDKIQVVI  232 (458)
Q Consensus       158 ~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~  232 (458)
                      ..| ++..+.++..++..|..++.+.+..++... +++++.++.++..+.    ..+...++.++.++...+..+...+.
T Consensus       173 ~lL-~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr  251 (651)
T 3grl_A          173 DLL-ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK  251 (651)
T ss_dssp             GGG-GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHH-hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999 666788999999999999998766655555 699999999998654    47889999999999999988889899


Q ss_pred             HhCcHHHHHHHhCCCCcc------chhh---HHHHHhHhhcCC------hhhHHHHHhcCChHHHHHHhccCC-hhhHHH
Q 043950          233 EAGVCRRLVELLGHPSPS------VLTP---ALWTVGNIVMGD------DFQTQCIINHGAVPCLLALLIHNH-KKSIKK  296 (458)
Q Consensus       233 ~~~~i~~L~~ll~~~~~~------~~~~---a~~~l~~l~~~~------~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~  296 (458)
                      +.|.++.|..+++.+++.      ...+   ++.++.-++..+      ..+...+.+.|+++.+++++..+. ...++.
T Consensus       252 Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~  331 (651)
T 3grl_A          252 EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT  331 (651)
T ss_dssp             HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH
T ss_pred             HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH
Confidence            999999999999864322      1122   455666665542      245567779999999999988652 457999


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHcC---------ChHHHHHHhcc-CChhhHHHHHHHHHHhhcCCC
Q 043950          297 VACWTISNITAGNREQIQAVIDAG---------LIVPLVNVLQD-AEFDIKKEAALAIANATVRGT  352 (458)
Q Consensus       297 ~a~~~l~nl~~~~~~~~~~l~~~~---------~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~  352 (458)
                      .|..+++.++++++.....+.+..         ++..|+.++.+ ...++|..|+.++..+..+..
T Consensus       332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~  397 (651)
T 3grl_A          332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ  397 (651)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence            999999999999988877777532         23333444443 368899999999999998643

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.74  E-value=3.1e-16  Score=153.62  Aligned_cols=338  Identities=16%  Similarity=0.122  Sum_probs=233.4

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .++.+.+.++++++.++..|+++++++..   .+..+     .+++.+.+++.+++ +.+|..|+.++.++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            46677778889999999999999888732   33333     24678899999888 99999999999999886665432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                         +.+.++.+..+|.++++.++..|+.+|..++...+.........+.+..++..+ .+.++-.+...+.++..++.. 
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~-  232 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK-  232 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC-
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC-
Confidence               236689999999999999999999999999987764311111223466777777 456777777777777776633 


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC---ChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          184 PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG---TNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       184 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                         .......+++.+..++++.++.++..+++++..+...   +++..+.+. .++.+.|+.++. +++.+|..|+.+++
T Consensus       233 ---~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          233 ---DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             ---SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             ---ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence               2234567888888999999999999999999998742   233333222 345566666554 66778888888888


Q ss_pred             HhhcCChhhH------------------HHHH-------hc----CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH
Q 043950          261 NIVMGDDFQT------------------QCII-------NH----GAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE  311 (458)
Q Consensus       261 ~l~~~~~~~~------------------~~~~-------~~----~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  311 (458)
                      .++...+...                  ....       +.    .+++.|...+.+. +.++|..+++++++++...+.
T Consensus       308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~  386 (591)
T 2vgl_B          308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ  386 (591)
T ss_dssp             HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence            7764322110                  1100       11    2455666777777 889999999999999987654


Q ss_pred             HHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHH
Q 043950          312 QIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENI  390 (458)
Q Consensus       312 ~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l  390 (458)
                      ...     ..++.|++++...+..++..++.++.+++.....      .....+..|...++ ..++.++..++|+++.+
T Consensus       387 ~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~------~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey  455 (591)
T 2vgl_B          387 SAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN------KYESIIATLCENLDSLDEPDARAAMIWIVGEY  455 (591)
T ss_dssp             HHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS------SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred             HHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence            333     2566778888777777777777777777643211      12345566666664 34566666666666665


Q ss_pred             HH
Q 043950          391 LK  392 (458)
Q Consensus       391 ~~  392 (458)
                      ..
T Consensus       456 ~~  457 (591)
T 2vgl_B          456 AE  457 (591)
T ss_dssp             CT
T ss_pred             cc
Confidence            43

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.72  E-value=1.2e-15  Score=135.29  Aligned_cols=261  Identities=13%  Similarity=0.121  Sum_probs=203.8

Q ss_pred             HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 043950           60 EDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD  139 (458)
Q Consensus        60 ~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  139 (458)
                      ......+.++.|++.|.+++ +.+|..|+++|+++..  +         +.++.|..++.++++.+|..++++|+.+...
T Consensus        17 ~~~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~   84 (280)
T 1oyz_A           17 YNQCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC   84 (280)
T ss_dssp             HHHHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence            34456678999999999988 8999999999999874  2         3478899999999999999999999998643


Q ss_pred             CCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950          140 SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY  219 (458)
Q Consensus       140 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~  219 (458)
                      .....      ..++.+...+..++++.++..++++|..+....+    ......++.+...+.++++.++..+++++++
T Consensus        85 ~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~  154 (280)
T 1oyz_A           85 KKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISV  154 (280)
T ss_dssp             TTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             cccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence            32211      1223333333467889999999999999975321    2235778999999999999999999999998


Q ss_pred             hccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHH
Q 043950          220 LSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVAC  299 (458)
Q Consensus       220 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~  299 (458)
                      +..           .+.++.|+.++.++++.++..|+++|+.+....+         ..++.+..++.++ ++.+|..|+
T Consensus       155 ~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~  213 (280)
T 1oyz_A          155 IND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAI  213 (280)
T ss_dssp             C--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHH
T ss_pred             cCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHH
Confidence            753           2478999999999999999999999999853332         3567888999888 899999999


Q ss_pred             HHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHH
Q 043950          300 WTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPK  378 (458)
Q Consensus       300 ~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~  378 (458)
                      ++|+++..           ...++.|+..+.+++  ++..++.+|+.+-.            ...++.|..++. .++++
T Consensus       214 ~aL~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------~~~~~~L~~~l~~~~~~~  268 (280)
T 1oyz_A          214 IGLSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNE  268 (280)
T ss_dssp             HHHHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCH
T ss_pred             HHHHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------hhhhHHHHHHHhcCCCcH
Confidence            99999852           247888999998644  89999999999843            135777888875 45677


Q ss_pred             HHHHHHHHHH
Q 043950          379 IVTVCLEGLE  388 (458)
Q Consensus       379 v~~~~~~~l~  388 (458)
                      ++..++..+.
T Consensus       269 ~~~~~~~~l~  278 (280)
T 1oyz_A          269 IITSAIDKLK  278 (280)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            7777777664

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.69  E-value=1.1e-14  Score=150.33  Aligned_cols=401  Identities=12%  Similarity=0.118  Sum_probs=264.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-H
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT-N  103 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-~  103 (458)
                      ++.+.+.+.+.++..+..|+.++..++.+........... .+++.+++.+.+++ +.+|..++++++.++....... .
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP  448 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence            4455566778889999999999999976531122222222 47889999999988 8999999999999886311100 0


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-----CchhhHHhhhCCHHHHHHHhcc-cccHHHHHHHHHHHH
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS-----PGCRNLVLREEALIPLLAQLNE-HAKLSMLRIATWTLS  177 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~l~  177 (458)
                      .-.-..+++.++..+.+. +.++..+++++.+++...     ......+  ...++.++..+.. +.++.++..++.++.
T Consensus       449 ~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          449 QQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            000113467888888765 899999999999998532     1122222  2346677777742 334678999999999


Q ss_pred             HhhcCCCCCChhhhhhhHHHHHHhhcCC---------------ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH
Q 043950          178 KLCKGKPQPPFDQVRPALPALAQLIHLD---------------DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE  242 (458)
Q Consensus       178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~---------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~  242 (458)
                      .+....+.........++|.++..+...               ...++..++.++.+++........... ..+++.+..
T Consensus       526 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~  604 (861)
T 2bpt_A          526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHH
T ss_pred             HHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHH
Confidence            9987755433444566777777666521               345777889999888854433222122 247788888


Q ss_pred             HhCCCCc-cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCC
Q 043950          243 LLGHPSP-SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL  321 (458)
Q Consensus       243 ll~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  321 (458)
                      .+.+.+. .++..++.+++.++..........+ ..+++.+...+.++ ++.++..++.+++.++....+...... ..+
T Consensus       605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l  681 (861)
T 2bpt_A          605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHH
T ss_pred             HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHH
Confidence            8888766 8999999999999865444333333 24788899999776 888999999999999863322322222 247


Q ss_pred             hHHHHHHhccCC--hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC-----------HHHHHHHHHHHH
Q 043950          322 IVPLVNVLQDAE--FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD-----------PKIVTVCLEGLE  388 (458)
Q Consensus       322 ~~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-----------~~v~~~~~~~l~  388 (458)
                      ++.++..+.+.+  .+++..++.+++.++......+..++-  .+++.+...+....           ..++..+++++.
T Consensus       682 ~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~  759 (861)
T 2bpt_A          682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV  759 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            778888887764  889999999999998754334433332  24666777666421           357888899999


Q ss_pred             HHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC----ChHHHHHHHHHHHHhcC
Q 043950          389 NILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD----NNGIREKAVKILETYWC  447 (458)
Q Consensus       389 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~v~~~a~~~l~~~~~  447 (458)
                      .++........      ...++...     .++.|.....+.    +.+++..|..++..+..
T Consensus       760 ~i~~~l~~~~~------~~~~~~~~-----i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          760 GIVAGLHDKPE------ALFPYVGT-----IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             HHHHHTTTCHH------HHGGGHHH-----HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHH------HHHHHHHH-----HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            88865331100      01111222     244555554442    78899999988887743

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.68  E-value=4.2e-15  Score=131.78  Aligned_cols=255  Identities=13%  Similarity=0.106  Sum_probs=199.8

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      .+.++.+++.|.++++.++..|+++|.++..            .+.++.|++++.+++ +.+|..|+++|+.+... +..
T Consensus        22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~   87 (280)
T 1oyz_A           22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKC   87 (280)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTT
T ss_pred             HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-ccc
Confidence            4579999999999999999999999999832            136889999999988 89999999999998753 221


Q ss_pred             HHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          102 TNVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       102 ~~~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      ..     .+++.|. .++.++++.+|..++++|+++....+..     ....++.++..+ .++++.++..++++|.++.
T Consensus        88 ~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           88 ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred             ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence            11     1234444 2457789999999999999997543322     123567788888 7889999999999999875


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                      .          ...++.+..++.++++.++..++++++.+....+         ..++.|..++.++++.++..|+++|+
T Consensus       157 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~  217 (280)
T 1oyz_A          157 D----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLS  217 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            4          2478999999999999999999999998853222         35688899999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc-CChhhHHH
Q 043950          261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD-AEFDIKKE  339 (458)
Q Consensus       261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~  339 (458)
                      ++.           +...++.++..+.++ +  ++..|+++|+.+..           ..+++.|..++.+ .+.++...
T Consensus       218 ~~~-----------~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~  272 (280)
T 1oyz_A          218 YRK-----------DKRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITS  272 (280)
T ss_dssp             HTT-----------CGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHH
T ss_pred             HhC-----------CHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHH
Confidence            885           235788899999765 3  89999999999853           1478889999865 46777777


Q ss_pred             HHHHHH
Q 043950          340 AALAIA  345 (458)
Q Consensus       340 a~~~L~  345 (458)
                      ++.++.
T Consensus       273 ~~~~l~  278 (280)
T 1oyz_A          273 AIDKLK  278 (280)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            777664

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.68  E-value=5.5e-15  Score=145.28  Aligned_cols=361  Identities=14%  Similarity=0.080  Sum_probs=255.6

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      -.++.+.+.|+++++.++..|+++|+++..   .+    +. ..+++.+.+++.+++ +.+|..|+.++.++...+++..
T Consensus       107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~~----~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v  177 (618)
T 1w63_A          107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS---SE----MC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM  177 (618)
T ss_dssp             HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---HH----HH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---HH----HH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence            457788888999999999999999999842   11    22 246888899999988 9999999999999988666543


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc--------------cccHHH
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--------------HAKLSM  168 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------------~~~~~~  168 (458)
                      .     +.++.+..++.+.++.++..|+.+|..++..++.....+  ...++.++..+.+              ..++-.
T Consensus       178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  250 (618)
T 1w63_A          178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL  250 (618)
T ss_dssp             G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred             H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence            2     678888999999999999999999999987655432222  2567778877743              246778


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc------CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH
Q 043950          169 LRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH------LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE  242 (458)
Q Consensus       169 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~  242 (458)
                      +..++.++..++...+    .......+.+..++.      +.+..+...+++++..+... +.    +. ...+..|..
T Consensus       251 q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~-~~a~~~L~~  320 (618)
T 1w63_A          251 QVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LR-VLAINILGR  320 (618)
T ss_dssp             HHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HH-HHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HH-HHHHHHHHH
Confidence            8888899999886532    122334444444442      34568888999999887532 21    11 135688889


Q ss_pred             HhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCCh
Q 043950          243 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI  322 (458)
Q Consensus       243 ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~  322 (458)
                      ++.++++.++..|+.+|+.++..++...     ....+.++.++.++ +..+|..|..++..++...  +...     ++
T Consensus       321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~--nv~~-----iv  387 (618)
T 1w63_A          321 FLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGN--NIRG-----MM  387 (618)
T ss_dssp             HHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSS--STHH-----HH
T ss_pred             HHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHHcccc--cHHH-----HH
Confidence            9999999999999999999987554322     23567888999988 9999999999999998642  1222     45


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCC
Q 043950          323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGS  402 (458)
Q Consensus       323 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~  402 (458)
                      +.+...+.+.+.+++..++.+++.++....+....+      ++.|++++......+...++..+..++...++.     
T Consensus       388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~------v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l-----  456 (618)
T 1w63_A          388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWH------IDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM-----  456 (618)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHH------HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-----
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHH------HHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-----
Confidence            678888888899999999999999987543222222      566777777665555555666666666654432     


Q ss_pred             CCCchhHHHHHHHhcchHHHHHhhhc--CCChHHHHHHHHHHHHhc
Q 043950          403 TIGDVNQYARLVEEDEGFKKIEGLKS--HDNNGIREKAVKILETYW  446 (458)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~  446 (458)
                              ...     ++..|..+..  ...+.+...+.|++..|-
T Consensus       457 --------~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~  489 (618)
T 1w63_A          457 --------HAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYG  489 (618)
T ss_dssp             --------HHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHH
T ss_pred             --------HHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhH
Confidence                    111     1233333322  133444557888888885

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.66  E-value=1.4e-14  Score=149.37  Aligned_cols=356  Identities=13%  Similarity=0.187  Sum_probs=245.0

Q ss_pred             ccHHHHHHhhcC-------CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q 043950           23 EILPAMVAGVWS-------DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIA   95 (458)
Q Consensus        23 ~~i~~l~~~l~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~   95 (458)
                      ..+|.+++.+..       ++..++..|..+|..++...+.....     .+++.+.+.+.+++ ...|..|+++++.++
T Consensus       324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~-----~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~  397 (861)
T 2bpt_A          324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE-----PVLEFVEQNITADN-WRNREAAVMAFGSIM  397 (861)
T ss_dssp             HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH-----HHHHHHHHHTTCSS-HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHcCCCC-hhHHHHHHHHHHHHH
Confidence            457788888874       23678899999998887643111111     35667777778877 799999999999999


Q ss_pred             CCCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch---hhHHhhhCCHHHHHHHhcccccHHHHHH
Q 043950           96 SGTS-MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC---RNLVLREEALIPLLAQLNEHAKLSMLRI  171 (458)
Q Consensus        96 ~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~  171 (458)
                      .+.. +.....+. .+++.++..+.++++.+|..+++++++++...+..   ...  -...++.++..+ .+. +.++..
T Consensus       398 ~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~  472 (861)
T 2bpt_A          398 DGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATN  472 (861)
T ss_dssp             SSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHH
T ss_pred             cCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHH
Confidence            8543 32222232 46889999999999999999999999998542110   111  123567777777 333 889999


Q ss_pred             HHHHHHHhhcCCC----CCChhhhhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC
Q 043950          172 ATWTLSKLCKGKP----QPPFDQVRPALPALAQLIHLDD--EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG  245 (458)
Q Consensus       172 a~~~l~~l~~~~~----~~~~~~~~~~l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~  245 (458)
                      ++|++.+++....    .........+++.+...+.+.+  +.++..++.+++.++............ .+++.++..+.
T Consensus       473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~  551 (861)
T 2bpt_A          473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG  551 (861)
T ss_dssp             HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence            9999999987532    2222445778888888888544  789999999999998654433332222 35566665554


Q ss_pred             CC---------------CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChh-hHHHHHHHHHHHhhcCC
Q 043950          246 HP---------------SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKK-SIKKVACWTISNITAGN  309 (458)
Q Consensus       246 ~~---------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~v~~~a~~~l~nl~~~~  309 (458)
                      ..               ...++..++.++++++...+....... ..+++.+...+++. +. .++..++++++.++...
T Consensus       552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~  629 (861)
T 2bpt_A          552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASL  629 (861)
T ss_dssp             HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHH
Confidence            21               234677889999998865543322222 24677888888877 66 89999999999998632


Q ss_pred             HHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC--HHHHHHHHHHH
Q 043950          310 REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD--PKIVTVCLEGL  387 (458)
Q Consensus       310 ~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~~~~~l  387 (458)
                      ......... .+++.+...+..++++++..++.+++.++.........++  ..+++.+...+.+++  ++++..++.++
T Consensus       630 ~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l  706 (861)
T 2bpt_A          630 GKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVF  706 (861)
T ss_dssp             GGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred             hhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence            222222222 2788899999888889999999999999865443333232  235667777777654  78999999999


Q ss_pred             HHHHHhch
Q 043950          388 ENILKVGE  395 (458)
Q Consensus       388 ~~l~~~~~  395 (458)
                      +.++....
T Consensus       707 ~~l~~~~~  714 (861)
T 2bpt_A          707 GDIASNIG  714 (861)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHHhh
Confidence            99987644

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.65  E-value=2.6e-14  Score=147.68  Aligned_cols=276  Identities=19%  Similarity=0.206  Sum_probs=195.1

Q ss_pred             cHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           24 ILPAMVAGVWSD--DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        24 ~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      .++.+.+.+.++  +..++..|+.++..++..-............+++.+.+.+.+++ ++++..++.+|..++...+..
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            466677777776  68999999999999875421110011111235777778777777 899999999999998755554


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC------------------chhhHHh--hhCCHHHHHHHhc
Q 043950          102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP------------------GCRNLVL--REEALIPLLAQLN  161 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------------------~~~~~~~--~~~~l~~l~~~l~  161 (458)
                      ....+...+++.++..+.+.++.++..++..+.+++....                  .......  -...++.++..+.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~  331 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence            4444444778888888888889999999999988874310                  0000100  0234566666664


Q ss_pred             c------cccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh-hhHHHHHHh
Q 043950          162 E------HAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN-DKIQVVIEA  234 (458)
Q Consensus       162 ~------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~  234 (458)
                      .      +.+..++..+..++..++...+   ......+++.+...+.+.++.++..++++++.++.... +...... .
T Consensus       332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~  407 (876)
T 1qgr_A          332 KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I  407 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence            2      2345688888999988876543   23456788888888899999999999999999997654 3333232 3


Q ss_pred             CcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhH--HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          235 GVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT--QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       235 ~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      .+++.++..+.++++.+|..|++++++++...+...  ... -..+++.++..+.+  ++.++..++|++++++.
T Consensus       408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSA--EPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999987544321  011 12467778888865  37899999999999985

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.64  E-value=5.6e-15  Score=141.06  Aligned_cols=390  Identities=12%  Similarity=0.050  Sum_probs=266.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED-YPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      +..+++.+.++|..+|..|-..|.++...+         ..+++..|+.++.+++ ++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            445666777889999999999998863310         1245677888887652 479999999999999764321111


Q ss_pred             H-----H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc--cHHHHH
Q 043950          104 V-----V------IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA--KLSMLR  170 (458)
Q Consensus       104 ~-----~------~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~~  170 (458)
                      .     .      ....+-..|+..+.+.++.+ ..++.+++.++...... ..  -.+.++.++..+ .++  ++.++.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~~--w~~ll~~L~~~l-~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-NQ--WPELIPQLVANV-TNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-TC--CTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-cc--cHHHHHHHHHHh-ccCCCCHHHHH
Confidence            0     0      01123356777788777777 88889999987542110 01  134678888888 455  888999


Q ss_pred             HHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChhhHH-HHHHhCcHHHHHHHhCC
Q 043950          171 IATWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLD--DEEVLSDACWTLSYLSYGTNDKIQ-VVIEAGVCRRLVELLGH  246 (458)
Q Consensus       171 ~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~  246 (458)
                      .++.++..++... +.........+++.+...+.+.  ++.++..++++++++...-..... .....-+++.+...+.+
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  228 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC  228 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            9999999999753 2222334467888899999887  789999999999987643221110 01111246677777888


Q ss_pred             CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH---------------
Q 043950          247 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE---------------  311 (458)
Q Consensus       247 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~---------------  311 (458)
                      +++.++..+++++..++...+......+..++++.++..+.+. ++.++..|++++..++.....               
T Consensus       229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  307 (462)
T 1ibr_B          229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP  307 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence            8899999999999999876654433323226788888888877 889999999999988753110               


Q ss_pred             ------HHHHHHHcCChHHHHHHhccC-------ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHH
Q 043950          312 ------QIQAVIDAGLIVPLVNVLQDA-------EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK  378 (458)
Q Consensus       312 ------~~~~l~~~~~~~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  378 (458)
                            ...... ..++|.++..+...       +..++..|..+|..++.........     .+++.+...+.++++.
T Consensus       308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~  381 (462)
T 1ibr_B          308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWR  381 (462)
T ss_dssp             SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHH
T ss_pred             cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChH
Confidence                  011011 23566677777432       3578999999999998654322222     3567778888899999


Q ss_pred             HHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950          379 IVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG  448 (458)
Q Consensus       379 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  448 (458)
                      ++..++.+++.+........           +...  -...+..+..+++++++.|+..|.+.+.++...
T Consensus       382 ~r~aal~~l~~l~~~~~~~~-----------~~~~--l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          382 YRDAAVMAFGCILEGPEPSQ-----------LKPL--VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHHHHTSSSSCTTT-----------TCTT--TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHH-----------HHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999986322110           0111  134578888888999999999999999998654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.63  E-value=4.9e-14  Score=145.64  Aligned_cols=407  Identities=15%  Similarity=0.183  Sum_probs=258.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT-  102 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-  102 (458)
                      .++.+.+.++++++.++..|++++..++.+...+..... -..+++.++..+.+++ +.+|..|++++++++...+... 
T Consensus       367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~  444 (876)
T 1qgr_A          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI  444 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence            355566777788999999999999999765421222222 2357899999999988 8999999999999987433210 


Q ss_pred             -HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC---------------chhhHHhhhCCHHHHHHHhcccc--
Q 043950          103 -NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP---------------GCRNLVLREEALIPLLAQLNEHA--  164 (458)
Q Consensus       103 -~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~l~~l~~~l~~~~--  164 (458)
                       .... ..+++.++..+.+. +.++..+++++.+++....               .....+  ...++.++..+....  
T Consensus       445 ~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~  520 (876)
T 1qgr_A          445 NDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH  520 (876)
T ss_dssp             STTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred             cHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence             0001 14467888888765 8999999999999984311               111111  235666666664322  


Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-----------CC----hHHHHHHHHHHHHhccCCh-hhH
Q 043950          165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL-----------DD----EEVLSDACWTLSYLSYGTN-DKI  228 (458)
Q Consensus       165 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----------~~----~~~~~~~~~~l~~l~~~~~-~~~  228 (458)
                      +..++..+..++..+....+.........+++.+...+..           .|    ++++..++.++..++.... ...
T Consensus       521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~  600 (876)
T 1qgr_A          521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA  600 (876)
T ss_dssp             STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            3567788889999888776544445556777777666542           22    4567788899999886554 333


Q ss_pred             HHHHHhCcHHHHHHHhCCCC--ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950          229 QVVIEAGVCRRLVELLGHPS--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT  306 (458)
Q Consensus       229 ~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~  306 (458)
                      .... ..+++.++.++++..  ..++..++.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++
T Consensus       601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            3222 357888889998764  468899999999998643332222222 367888888876536789999999999998


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC----C----
Q 043950          307 AGNREQIQAVIDAGLIVPLVNVLQD--AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV----D----  376 (458)
Q Consensus       307 ~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~----~----  376 (458)
                      ......+...+. .+++.++..+.+  .+.+++..+++++++++.....++..++  ..+++.+...+..+    +    
T Consensus       679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~  755 (876)
T 1qgr_A          679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV  755 (876)
T ss_dssp             HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred             HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence            632222333232 478888888877  3678999999999999763222322222  12455555555433    1    


Q ss_pred             ---HHHHHHHHHHHHHHHHhchhhcc-cCCCCCchhHHHHHHHhcchHHHHHhhhcCC--ChHHHHHHHHHHHHhc
Q 043950          377 ---PKIVTVCLEGLENILKVGEAEKN-TGSTIGDVNQYARLVEEDEGFKKIEGLKSHD--NNGIREKAVKILETYW  446 (458)
Q Consensus       377 ---~~v~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~  446 (458)
                         ..++..++.++..++........ .........+|...+     +..+..+..++  ++.++..|...+..+.
T Consensus       756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~  826 (876)
T 1qgr_A          756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLC  826 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence               26788888888888775432100 000000112222322     34444444555  6789888888877654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.63  E-value=2.8e-15  Score=143.16  Aligned_cols=363  Identities=13%  Similarity=0.077  Sum_probs=245.9

Q ss_pred             hccHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCcc----------HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHH
Q 043950           22 LEILPAMVAGVWSD--DNSLQLEATTQFRILLSIERSPR----------IEDVIQAGVVPRFVEFLMREDYPQLQYEAAW   89 (458)
Q Consensus        22 ~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~   89 (458)
                      .+.+..+...+.++  ++.+|..|+..|.++........          ...-....+-..|++.+.+++ +.+ ..++.
T Consensus        34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~  111 (462)
T 1ibr_B           34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQ  111 (462)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHH
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHH
Confidence            34455666777654  68999999999999976421000          000012234556788888877 677 88999


Q ss_pred             HHHHHcCCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccc-c
Q 043950           90 ALTNIASGTSMNTNVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHA-K  165 (458)
Q Consensus        90 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~-~  165 (458)
                      +++.++.......   .-.+.++.|+..+.++  ++.+++.++.+|+.++... +..-... -...++.++..+.+.. +
T Consensus       112 ~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~  187 (462)
T 1ibr_B          112 CVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPS  187 (462)
T ss_dssp             HHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCC
Confidence            9999887321100   0136789999999888  8999999999999998643 2211111 1235667777774443 7


Q ss_pred             HHHHHHHHHHHHHhhcCCC-C-CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH
Q 043950          166 LSMLRIATWTLSKLCKGKP-Q-PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL  243 (458)
Q Consensus       166 ~~~~~~a~~~l~~l~~~~~-~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l  243 (458)
                      +.++..+++++.++..... . ........+++.+...+.+.++.++..++.++..++..........+..++++.++..
T Consensus       188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  267 (462)
T 1ibr_B          188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA  267 (462)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999998764321 0 0111113357777778888899999999999999986554333222322678888888


Q ss_pred             hCCCCccchhhHHHHHhHhhcCChh---------------------hHHHHHhcCChHHHHHHhccC------ChhhHHH
Q 043950          244 LGHPSPSVLTPALWTVGNIVMGDDF---------------------QTQCIINHGAVPCLLALLIHN------HKKSIKK  296 (458)
Q Consensus       244 l~~~~~~~~~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~~~~l~~ll~~~------~~~~v~~  296 (458)
                      +++.++.++..++.++..++.....                     ...... ..+++.++..+...      .+..+|.
T Consensus       268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~  346 (462)
T 1ibr_B          268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCK  346 (462)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred             HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHH
Confidence            8888889999999999888753210                     001001 23566666666432      1457999


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC
Q 043950          297 VACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD  376 (458)
Q Consensus       297 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~  376 (458)
                      .|+.++..++...++   .+. ..+++.+...+.+.+..+|..|+.+++.++.+...+...... ..+++.+...+.+++
T Consensus       347 ~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~  421 (462)
T 1ibr_B          347 AAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS  421 (462)
T ss_dssp             HHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSC
T ss_pred             HHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCC
Confidence            999999999863222   111 236777888888889999999999999999865422111111 457889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchh
Q 043950          377 PKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       377 ~~v~~~~~~~l~~l~~~~~~  396 (458)
                      +.|+..++++|.++......
T Consensus       422 ~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          422 VVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHhccc
Confidence            99999999999999986544

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.61  E-value=1.5e-13  Score=146.66  Aligned_cols=408  Identities=11%  Similarity=0.100  Sum_probs=268.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .++.+++.+.++|+.+|..|...|.+....... ....-....+++.+++.+.+++ +.+|..|+.+|+.++...++.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence            477889999999999999999999987654311 1111112246788999998877 899999999999998754431  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh-----hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR-----NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK  178 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~  178 (458)
                       .. ..+++.++..+.++++.+|..++.+|+.++...+...     ..-.-...++.++..+.+++++.++..++.++..
T Consensus        83 -~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           83 -QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  160 (1230)
T ss_dssp             -HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             -HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence             11 1347888888888888999999999999985433210     0011234678888888445778899999999999


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHH
Q 043950          179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALW  257 (458)
Q Consensus       179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~  257 (458)
                      ++...+..-......+++.+...+.++++.++..++.+++.++......   +. ..+++.++..+.+. +..++..++.
T Consensus       161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHH
Confidence            9865333222345778888889999999999999999999998654422   12 24677777777654 3578889999


Q ss_pred             HHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-------
Q 043950          258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-------  330 (458)
Q Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-------  330 (458)
                      +++.++...+...... -..+++.++..+.++ ++.+|..+.+++..++...++.+..... .+++.++..+.       
T Consensus       237 ~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~  313 (1230)
T 1u6g_C          237 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY  313 (1230)
T ss_dssp             HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCC
Confidence            9999987554332221 246889999999887 8899999999999998632221111111 12333333221       


Q ss_pred             ------------------------------cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHH
Q 043950          331 ------------------------------DAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIV  380 (458)
Q Consensus       331 ------------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  380 (458)
                                                    +...++|..|+.++..++.........+  -..+++.+...+.+.++.++
T Consensus       314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr  391 (1230)
T 1u6g_C          314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREENVK  391 (1230)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSHHH
T ss_pred             cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchHHH
Confidence                                          0123578899999999987433222222  24567888888888889999


Q ss_pred             HHHHHHHHHHHHhchhhcc-c-CC-CC---CchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          381 TVCLEGLENILKVGEAEKN-T-GS-TI---GDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       381 ~~~~~~l~~l~~~~~~~~~-~-~~-~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      ..++.++..++........ . +. ..   .+.......+ -...++.+.....++++.++..+...+..+..
T Consensus       392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQ-VPNIVKALHKQMKEKSVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHH-TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHH-hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            9999999888764321000 0 00 00   0000001111 11234555555778888888877777776644

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.60  E-value=9.2e-14  Score=136.60  Aligned_cols=327  Identities=13%  Similarity=0.066  Sum_probs=235.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .++.+.+++.+.++.++..|+.++.++.... ++..     .++++.+.+++.+.+ +.++..|+.+|..++..+++...
T Consensus       143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~  215 (618)
T 1w63_A          143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLA  215 (618)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHH
Confidence            3788889999999999999999999997753 3322     267888899999888 89999999999999986554322


Q ss_pred             HHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-----cc
Q 043950          104 VVIDHGAVPIFVKLLAS---------------PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-----EH  163 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-----~~  163 (458)
                      .+.  ..++.++.+|.+               .++-.+..++.+|+.++..++...+     ...+.+...+.     .+
T Consensus       216 ~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~  288 (618)
T 1w63_A          216 HFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKN  288 (618)
T ss_dssp             HHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSST
T ss_pred             HHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccc
Confidence            222  567878776652               4788888899999999876654322     23344444432     12


Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH
Q 043950          164 AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL  243 (458)
Q Consensus       164 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l  243 (458)
                      .+..+...+++++..+...     ......+++.+..++.+++++++..++.++..++...+.    .+ ......++.+
T Consensus       289 ~~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~-~~~~~~i~~~  358 (618)
T 1w63_A          289 VGNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AV-QRHRSTIVDC  358 (618)
T ss_dssp             HHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HH-GGGHHHHHHG
T ss_pred             hHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HH-HHHHHHHHHH
Confidence            3457888888888886432     223346778888999999999999999999999854432    22 2356788999


Q ss_pred             hCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChH
Q 043950          244 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIV  323 (458)
Q Consensus       244 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~  323 (458)
                      +.+++..+|..|+.++..++....  ...     +++.+...+.+. +.++|..++.+++.++...+.....     .++
T Consensus       359 l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~-----~v~  425 (618)
T 1w63_A          359 LKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRW-----HID  425 (618)
T ss_dssp             GGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHH-----HHH
T ss_pred             ccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHH-----HHH
Confidence            999999999999999999986432  222     357788888877 8999999999999999742222221     367


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 043950          324 PLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       324 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~  393 (458)
                      .+++++......++..++..+..+..... +....     .+..|...+..  .++.+...++|+++.+...
T Consensus       426 ~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~  491 (618)
T 1w63_A          426 TIMRVLTTAGSYVRDDAVPNLIQLITNSV-EMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL  491 (618)
T ss_dssp             HHHHHHHHTGGGSCSSHHHHHHHHHHHSC-STHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHhcCh-hHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence            78888887777777778888888876433 22222     24556666653  3445556789999988754

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.52  E-value=4.9e-13  Score=142.80  Aligned_cols=396  Identities=12%  Similarity=0.108  Sum_probs=250.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCcc----HHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCCh
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPR----IEDVIQAGVVPRFVEFLMR-EDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~-~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ++.+++.+.++++.+|..|+.+|..++.......    ...-.-..++|.|++.+.+ ++ ..++..|+.++..++...+
T Consensus        88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~~  166 (1230)
T 1u6g_C           88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQG  166 (1230)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhH
Confidence            4555555566666666666666666654431110    0111123478888888884 55 8999999999999884221


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950          100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l  179 (458)
                      ...... -..+++.+...+.++++.+|..++.+++.++...+..   + -...++.++..+....+...+..++.++..+
T Consensus       167 ~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l  241 (1230)
T 1u6g_C          167 GLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI  241 (1230)
T ss_dssp             SSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred             hHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence            111000 0234677788888888999999999999998654331   1 1235788888885554455677788888888


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-------------
Q 043950          180 CKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-------------  246 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-------------  246 (458)
                      +...+..-......++|.+...+.+.+++++..++.++..++........... ..+++.+++.+..             
T Consensus       242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~  320 (1230)
T 1u6g_C          242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDE  320 (1230)
T ss_dssp             HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCccccccc
Confidence            76543322234478899999999999999999999999988865433222222 2345555554431             


Q ss_pred             ------------------------CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950          247 ------------------------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTI  302 (458)
Q Consensus       247 ------------------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l  302 (458)
                                              ..+.+|..|+.++..++...+......+ ..+++.++..+.+. +..+|..++.++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l  398 (1230)
T 1u6g_C          321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAY  398 (1230)
T ss_dssp             ------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHH
T ss_pred             ccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHHH
Confidence                                    1234688899999998875544334343 46788888888777 889999999988


Q ss_pred             HHhhc--CC-----------------HHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 043950          303 SNITA--GN-----------------REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREG  363 (458)
Q Consensus       303 ~nl~~--~~-----------------~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~  363 (458)
                      ..++.  +.                 .......+ ..+++.+...+.++++.+|..++.+++.++.........++  ..
T Consensus       399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~  475 (1230)
T 1u6g_C          399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PV  475 (1230)
T ss_dssp             HHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HH
T ss_pred             HHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HH
Confidence            88764  11                 11112222 23566677778888999999999999998865321111111  13


Q ss_pred             ChHHHHhhccCCC--HHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHH
Q 043950          364 CIKPLCDLLLCVD--PKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI  441 (458)
Q Consensus       364 ~l~~L~~ll~~~~--~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~  441 (458)
                      +++.+...+.+++  ..++..++..+..++......           .+...+  ...+..+.....+.+..++..|...
T Consensus       476 ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~-----------~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~  542 (1230)
T 1u6g_C          476 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ-----------VFHPHV--QALVPPVVACVGDPFYKITSEALLV  542 (1230)
T ss_dssp             HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG-----------GGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH-----------HHHhHH--HHHHHHHHHHHcccchHHHHHHHHH
Confidence            5677788887765  488888888888887632221           112222  1235555555666667666555555


Q ss_pred             HHHh
Q 043950          442 LETY  445 (458)
Q Consensus       442 l~~~  445 (458)
                      +..+
T Consensus       543 l~~l  546 (1230)
T 1u6g_C          543 TQQL  546 (1230)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.49  E-value=2.9e-12  Score=108.27  Aligned_cols=191  Identities=20%  Similarity=0.167  Sum_probs=158.8

Q ss_pred             HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950           20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ...+.++.+++.|+++++.++..|+..|..+..            .+.++.|++++.+++ +.++..|+++|+.+..   
T Consensus        16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~---   79 (211)
T 3ltm_A           16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD---   79 (211)
T ss_dssp             CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC---
T ss_pred             cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC---
Confidence            345679999999999999999999999998732            246899999999988 8999999999999875   


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950          100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l  179 (458)
                              .+.++.|+.++.++++.+|..++++|+.+..           .+.++.++..+ .++++.++..++++|..+
T Consensus        80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A           80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEI  139 (211)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHc
Confidence                    2458999999999999999999999999842           23678888888 788999999999999998


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHH
Q 043950          180 CKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTV  259 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l  259 (458)
                      ..          ...++.+..++.++++.++..++.+|+.+..           ...++.|..++.++++.++..|..+|
T Consensus       140 ~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL  198 (211)
T 3ltm_A          140 GD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL  198 (211)
T ss_dssp             CC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            43          3578899999999999999999999999842           23567788888889999999999999


Q ss_pred             hHhhcCCh
Q 043950          260 GNIVMGDD  267 (458)
Q Consensus       260 ~~l~~~~~  267 (458)
                      .++.....
T Consensus       199 ~~~~~~~~  206 (211)
T 3ltm_A          199 ETHKSFNH  206 (211)
T ss_dssp             HC------
T ss_pred             HhcCCCCC
Confidence            99876443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.48  E-value=2.2e-12  Score=108.06  Aligned_cols=186  Identities=20%  Similarity=0.180  Sum_probs=158.0

Q ss_pred             hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950           21 KLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM  100 (458)
Q Consensus        21 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  100 (458)
                      ..+..+.+++.|+++++.++..|+..|..+..            .+.++.|++++.+++ +.++..|+++|+.+...   
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~~---   75 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGDE---   75 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCCG---
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCCH---
Confidence            34668999999999999999999999998732            146899999999888 89999999999998651   


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                              ..++.|+.++.++++.+|..++++|+.+..           ...++.++..+ .++++.++..++++|..+.
T Consensus        76 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A           76 --------RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIG  135 (201)
T ss_dssp             --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHT
T ss_pred             --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhC
Confidence                    458999999999999999999999999842           13577888888 7889999999999999985


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                      .          ...++.+..++.++++.++..++++|+.+.  .         ...++.|..++.++++.++..|..+|.
T Consensus       136 ~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~  194 (201)
T 3ltj_A          136 D----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--G---------ERVRAAMEKLAETGTGFARKVAVNYLE  194 (201)
T ss_dssp             C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--S---------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3          467889999999999999999999999983  1         135678888888889999999999998


Q ss_pred             Hhh
Q 043950          261 NIV  263 (458)
Q Consensus       261 ~l~  263 (458)
                      ++.
T Consensus       195 ~l~  197 (201)
T 3ltj_A          195 THK  197 (201)
T ss_dssp             HCC
T ss_pred             HHH
Confidence            874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.47  E-value=4.1e-12  Score=107.31  Aligned_cols=187  Identities=21%  Similarity=0.186  Sum_probs=157.5

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh
Q 043950           65 AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR  144 (458)
Q Consensus        65 ~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  144 (458)
                      .+.++.|++.|.+++ +.+|..|++.|+.+..           .+.++.|+.++.++++.+|..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            357899999999888 8999999999998865           2568999999999999999999999999842      


Q ss_pred             hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 043950          145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT  224 (458)
Q Consensus       145 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~  224 (458)
                           .+.++.++..+ .++++.++..++++|..+..          ...++.+..++.++++.++..++.+|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23678888888 78889999999999999853          3578999999999999999999999999842  


Q ss_pred             hhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950          225 NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN  304 (458)
Q Consensus       225 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n  304 (458)
                               ...++.|..++.++++.++..++.+|+.+..           ...++.|..++.++ ++.||..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2467889999999999999999999999842           23577788899888 89999999999999


Q ss_pred             hhcC
Q 043950          305 ITAG  308 (458)
Q Consensus       305 l~~~  308 (458)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            9753

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.45  E-value=7.5e-11  Score=115.53  Aligned_cols=291  Identities=14%  Similarity=0.108  Sum_probs=174.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      +.+..++++.+++...+..+.-++..++..+ ++..   .  =+++.+.+=+++++ +.++..|+++|+++..  ++...
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~---~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~  145 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELI---R--LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE  145 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHH---H--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHH---H--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence            4677888899999999999988888886542 2211   1  14677888888998 8999999999999965  55443


Q ss_pred             HHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          104 VVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                           .+++.+.+.+  .+.++.+|..|+.++.++....|+.   +...+.++.+..++ .+.++.++..++.++..++.
T Consensus       146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence                 3478899999  8899999999999999998765542   22246788888888 78899999999999999987


Q ss_pred             CCCCCChhhhhhhHHHHH----HhhcCC-------------ChHHHHHHHHHHHHhccCC-hhhHHHHHHhCcHHHHHHH
Q 043950          182 GKPQPPFDQVRPALPALA----QLIHLD-------------DEEVLSDACWTLSYLSYGT-NDKIQVVIEAGVCRRLVEL  243 (458)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~----~ll~~~-------------~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~l  243 (458)
                      ..+.    .....+|.++    .++..+             ++-.+..++..+..++... ++....+.+  ++..++..
T Consensus       217 ~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~  290 (621)
T 2vgl_A          217 KNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNK  290 (621)
T ss_dssp             HCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHH
T ss_pred             hChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHh
Confidence            6432    1223333333    333221             4667777777777776432 222221111  22222221


Q ss_pred             hC-CC--------C--ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH
Q 043950          244 LG-HP--------S--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ  312 (458)
Q Consensus       244 l~-~~--------~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  312 (458)
                      +. .+        +  ..+...|..++..+.. .++...     .++..+..++.++ ++.+|..|...+..++...+. 
T Consensus       291 ~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-  362 (621)
T 2vgl_A          291 AQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-  362 (621)
T ss_dssp             HHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-
T ss_pred             hccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-
Confidence            11 01        1  1344444555544431 222111     1344455555555 555555555555555543221 


Q ss_pred             HHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHhh
Q 043950          313 IQAVIDAGLIVPLVNVLQ-DAEFDIKKEAALAIANAT  348 (458)
Q Consensus       313 ~~~l~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~l~  348 (458)
                      . ..+. .....++..+. ++|..++..++..+..++
T Consensus       363 ~-~~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          363 H-EAVK-THIETVINALKTERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             H-HHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             H-HHHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence            0 1112 13444455555 555555555555555554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.45  E-value=7.7e-12  Score=104.74  Aligned_cols=184  Identities=22%  Similarity=0.197  Sum_probs=157.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      +..+.++++|.+++ +.+|..|++.|+.+...           +.++.|+.++.++++.+|..++++|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCCh-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            46789999999999 89999999999988751           458999999999999999999999998842       


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN  225 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  225 (458)
                          .+.++.++..+ .++++.++..++++|..+..          ...++.+..++.++++.++..++++++.+..   
T Consensus        75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                13678888888 67899999999999999753          3578889999999999999999999998852   


Q ss_pred             hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950          226 DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI  305 (458)
Q Consensus       226 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl  305 (458)
                              .+.++.|..++.++++.++..|+++|+.+..  +         ..++.|..++.++ ++.+|..|..+|..+
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                    3467889999999999999999999999832  2         3577888889888 999999999999987


Q ss_pred             h
Q 043950          306 T  306 (458)
Q Consensus       306 ~  306 (458)
                      -
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.35  E-value=1.7e-10  Score=113.07  Aligned_cols=336  Identities=14%  Similarity=0.081  Sum_probs=221.7

Q ss_pred             HHHHHHhh--cCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           25 LPAMVAGV--WSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        25 i~~l~~~l--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +|.+.+++  .+.++.++..|+.++.++.... ++...   ..++++.+.++|.+++ +.++..|+.++..++..+++..
T Consensus       148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~---~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~~~~  222 (621)
T 2vgl_A          148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVP---MGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNPEEF  222 (621)
T ss_dssp             TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCC---CCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcC---chhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhChHHH
Confidence            55666777  6677888888888887776543 22111   1478999999998888 8999999999999988655421


Q ss_pred             HHHHhCCChHHHHHhhCCC-------------CHHHHHHHHHHHHHhhcC-CCchhhHHhhhCCHHHHHHHhcc------
Q 043950          103 NVVIDHGAVPIFVKLLASP-------------SDDVREQAVWALGNVAAD-SPGCRNLVLREEALIPLLAQLNE------  162 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~-------------~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~------  162 (458)
                      ...+. ..+..|.+++..+             ++-.+...+..|..++.. ++..++.+.+  .+..++..+.+      
T Consensus       223 ~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~  299 (621)
T 2vgl_A          223 KTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKK  299 (621)
T ss_dssp             TTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSS
T ss_pred             HHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccc
Confidence            11110 1223333443221             577888888888888753 2333333322  34444443311      


Q ss_pred             --cc--cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHH
Q 043950          163 --HA--KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR  238 (458)
Q Consensus       163 --~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~  238 (458)
                        +.  ...+...+..++..+.     ........++..+..++.+++++++..++..+..++...+. .. .+ .....
T Consensus       300 l~~~n~~~aVl~ea~~~i~~l~-----~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~  371 (621)
T 2vgl_A          300 VQHSNAKNAVLFEAISLIIHHD-----SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIE  371 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHH
T ss_pred             ccccchHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHH
Confidence              11  2367777778887774     23345567888899999999999999999999999866532 12 22 24567


Q ss_pred             HHHHHhC-CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 043950          239 RLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI  317 (458)
Q Consensus       239 ~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~  317 (458)
                      .++.++. +++..++..++.++..++.  +....     .++..+...+... +.+++..++..++.++...+....   
T Consensus       372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~-----~Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~k~~~~~~---  440 (621)
T 2vgl_A          372 TVINALKTERDVSVRQRAVDLLYAMCD--RSNAQ-----QIVAEMLSYLETA-DYSIREEIVLKVAILAEKYAVDYT---  440 (621)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCSSTH---
T ss_pred             HHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHH-----HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcCCcHH---
Confidence            8888898 8899999999999999974  44443     3466788888887 889999999999998741111111   


Q ss_pred             HcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC--HHHHHHHHHHHHHHHHhch
Q 043950          318 DAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD--PKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       318 ~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~~~~~l~~l~~~~~  395 (458)
                        -.+..|++++......+..++...+..++...+ +...+     .+..+++.+..+.  ..+...+.|+++.+....+
T Consensus       441 --~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~-~~~~~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~  512 (621)
T 2vgl_A          441 --WYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD-DVQGY-----AAKTVFEALQAPACHENLVKVGGYILGEFGNLIA  512 (621)
T ss_dssp             --HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC-SCHHH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHH
T ss_pred             --HHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh-hHHHH-----HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhc
Confidence              146677777776655677777777777765432 22222     2445666666543  4577778899988865443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.16  E-value=7.8e-09  Score=79.94  Aligned_cols=218  Identities=14%  Similarity=0.167  Sum_probs=175.4

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC
Q 043950          107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP  186 (458)
Q Consensus       107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~  186 (458)
                      +..++..++.+|.+.--.++.+|+..+.+++...|+..+-     .+..|+.++..+.....-.....+++.++...   
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---  101 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---  101 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence            3456889999998888899999999999999888775443     45678888877887777778888999988753   


Q ss_pred             ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCC
Q 043950          187 PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGD  266 (458)
Q Consensus       187 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  266 (458)
                       ...+.+++|.+..-..-.|+.++.....+|..++..++....     +++.-+..++.+++..-+..|+.+++.+....
T Consensus       102 -Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          102 -PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             -HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             -HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence             456788999999999999999999999999999977775443     56788899999988777888888888886655


Q ss_pred             hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHH
Q 043950          267 DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIAN  346 (458)
Q Consensus       267 ~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~  346 (458)
                      ..+.     ...+|.+..+|.+. +.-||..|..+|.+++..++..+..      +..-+.-+.+.+..++...-.+|+.
T Consensus       176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            4332     36799999999999 9999999999999999988774432      2234445677788888888888888


Q ss_pred             hhcC
Q 043950          347 ATVR  350 (458)
Q Consensus       347 l~~~  350 (458)
                      ++.-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8653

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.10  E-value=2.7e-09  Score=106.00  Aligned_cols=219  Identities=15%  Similarity=0.125  Sum_probs=156.2

Q ss_pred             HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhcCC
Q 043950           62 VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIF-VKLLASPSDDVREQAVWALGNVAADS  140 (458)
Q Consensus        62 ~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~  140 (458)
                      ..+..+.| +++.|++++ ++.|..|+++|++++. ++..+..+...+++..+ ..+|.+++.++|..|+++|.||+.+.
T Consensus        31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~  107 (684)
T 4gmo_A           31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE  107 (684)
T ss_dssp             HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            34445555 557789988 8999999999999998 78889989988888765 55788899999999999999999653


Q ss_pred             -CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950          141 -PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY  219 (458)
Q Consensus       141 -~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~  219 (458)
                       +.....+...|++++|...+..         ....+........... ......+           ..+...++.++++
T Consensus       108 g~d~~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~  166 (684)
T 4gmo_A          108 EADFCVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGL  166 (684)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHH
T ss_pred             CchHHHHHHHcChHHHHHHHHHh---------hHHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHH
Confidence             5566778888999999988832         1122222221110000 0111111           2244567778888


Q ss_pred             hccCChhhHHHHHHhCcHHHHHHHhCCC---CccchhhHHHHHhHhhcCChhhHHHHHhcCChH---HHHHHhccCChhh
Q 043950          220 LSYGTNDKIQVVIEAGVCRRLVELLGHP---SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVP---CLLALLIHNHKKS  293 (458)
Q Consensus       220 l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~---~l~~ll~~~~~~~  293 (458)
                      ++..+.+....+...+.++.++..|.+.   ..+++..|+.+|..++..++...+.+.+.+...   .+..+.. . +..
T Consensus       167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~  244 (684)
T 4gmo_A          167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDP  244 (684)
T ss_dssp             HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCT
T ss_pred             HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcH
Confidence            8887777777788889999999888542   346889999999999999998888888766433   3333333 3 334


Q ss_pred             HHHHHHHHHHHhh
Q 043950          294 IKKVACWTISNIT  306 (458)
Q Consensus       294 v~~~a~~~l~nl~  306 (458)
                      .+..+++.+.|+.
T Consensus       245 ~~~la~giL~Ni~  257 (684)
T 4gmo_A          245 RAVMACGVLHNVF  257 (684)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHh
Confidence            5778889999874

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.10  E-value=1.4e-08  Score=100.88  Aligned_cols=308  Identities=14%  Similarity=0.127  Sum_probs=207.5

Q ss_pred             cHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHH
Q 043950           24 ILPAMVAGVW---SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED-------YPQLQYEAAWALTN   93 (458)
Q Consensus        24 ~i~~l~~~l~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------~~~i~~~a~~~L~~   93 (458)
                      ++..+-+.|.   ++++.++..|+.+|.-+..+.. .        .++..|...+.+++       .+.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-R--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-H--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-H--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4666777776   6778899999999998866542 1        14566777776543       25788889999998


Q ss_pred             HcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950           94 IASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT  173 (458)
Q Consensus        94 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~  173 (458)
                      ...++..  .     .+++.|..++.+.+..+++.++.+|+-+..+....       .++..|+..+....+..+++.+.
T Consensus       464 a~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHH
Confidence            7664321  1     23677888888777788888999999875443321       13566777665566778999999


Q ss_pred             HHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH-hCCCCccc
Q 043950          174 WTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL-LGHPSPSV  251 (458)
Q Consensus       174 ~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~  251 (458)
                      .+|..+....        ...++.+++.+. +.++-++..++.+++.-..+.... .      .++.|+.. ..+.+..+
T Consensus       530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-~------aIq~LL~~~~~d~~d~V  594 (963)
T 4ady_A          530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-S------AVKRLLHVAVSDSNDDV  594 (963)
T ss_dssp             HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-H------HHHHHHHHHHHCSCHHH
T ss_pred             HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-H------HHHHHHHHhccCCcHHH
Confidence            9999886653        345566666555 577888888877776433222211 1      23333333 34567789


Q ss_pred             hhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc
Q 043950          252 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD  331 (458)
Q Consensus       252 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~  331 (458)
                      |..|+..|+.+..+.++         .++.++.+|.+..++.+|..|+++++.++.+++..       .++..|..+..+
T Consensus       595 RraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D  658 (963)
T 4ady_A          595 RRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKD  658 (963)
T ss_dssp             HHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccC
Confidence            99999999998776652         35566665555449999999999999998765321       257778888899


Q ss_pred             CChhhHHHHHHHHHHhhcCCCHH---HHHHHHHCCChHHHHhhcc--CCCHHHHHHHHHHHHHH
Q 043950          332 AEFDIKKEAALAIANATVRGTHE---QIKYLVREGCIKPLCDLLL--CVDPKIVTVCLEGLENI  390 (458)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~~~~~~---~~~~l~~~~~l~~L~~ll~--~~~~~v~~~~~~~l~~l  390 (458)
                      .+..|+..|+.+|+.+..+.+..   ....     .++.|.....  ++++..+-.+.-+.+.+
T Consensus       659 ~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          659 PVDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             SSHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            99999999999999998765433   2222     2344555554  34555555555444433

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.06  E-value=7e-08  Score=74.71  Aligned_cols=219  Identities=13%  Similarity=0.147  Sum_probs=170.6

Q ss_pred             hhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhh
Q 043950          149 REEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDK  227 (458)
Q Consensus       149 ~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~  227 (458)
                      +...+..++..+ ++.--.++.+++..+..++...    .......+..++-+++ ++..+.-....++++.++...++.
T Consensus        30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~----~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTR----EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTC----GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHh----HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            445678888888 6666789999999999998764    3455777777777765 566777788889999998777765


Q ss_pred             HHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          228 IQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       228 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      ..     +++|.+..-..-.++.++.....+|..++..+|....     +++.-+..++.++ +..-|..|...++.+..
T Consensus       105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltsk-d~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSK-NREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred             HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence            54     4678888888888999999999999999998887654     4567789999988 87778888888887766


Q ss_pred             CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHH
Q 043950          308 GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGL  387 (458)
Q Consensus       308 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l  387 (458)
                      ...++..     .++|.|+.+|.+.|.-+|..|..+|.+++.. ++..++.      +...+.-+++.++.+...+-.+|
T Consensus       174 n~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npklRki------i~~kl~e~~D~S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATL-NDKLRKV------VIKRLEELNDTSSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHHHHHH------HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred             cCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHHHHHH------HHHHHHHhcCcHHHHHHHHHHHH
Confidence            5544432     4799999999999999999999999999986 4455554      33455666778888888888999


Q ss_pred             HHHHHhch
Q 043950          388 ENILKVGE  395 (458)
Q Consensus       388 ~~l~~~~~  395 (458)
                      .++.-...
T Consensus       242 ~rl~l~e~  249 (253)
T 2db0_A          242 SRLLLLEG  249 (253)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHhc
Confidence            98876543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.04  E-value=1.6e-08  Score=90.20  Aligned_cols=277  Identities=15%  Similarity=0.060  Sum_probs=165.8

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      ..++.++++++++|...+....-.+..++... ++..      =+++.|.+=+++++ +-+|-.|+++|+++..  ++..
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~  137 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STML  137 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHH
Confidence            44667788999999999999988888876542 3322      25788889999999 8999999999999987  3443


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      +.     +.+.+.+.+.+.++.+|..|+.+..++....|+.   +  .+.+..+-..+ .+.++.++.+|+.++..+...
T Consensus       138 ~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~  206 (355)
T 3tjz_B          138 QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN  206 (355)
T ss_dssp             HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence            33     3577888899999999999999999998777653   2  25778887777 778888999999999999875


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhccCC-hhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950          183 KPQPPFDQVRPALPALAQLIHLD---DEEVLSDACWTLSYLSYGT-NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT  258 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  258 (458)
                      .        ...+..++..+...   ++-.+...++.+..+...+ +.     ....+++.+..+|++.++.|...|+++
T Consensus       207 d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~  273 (355)
T 3tjz_B          207 D--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASA  273 (355)
T ss_dssp             C--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHH
T ss_pred             c--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            3        12334444444332   4666666677776665443 21     223577888899999999999999999


Q ss_pred             HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHH
Q 043950          259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKK  338 (458)
Q Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~  338 (458)
                      +..+.......    . ..++..+..++.++ ++.+|..|...|..++...|...+.     .-..+.++++++|..+..
T Consensus       274 I~~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t  342 (355)
T 3tjz_B          274 IVNLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT  342 (355)
T ss_dssp             HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred             HHhccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence            98885522211    1 34566777788888 8999999999999998766554432     233466777777777765


Q ss_pred             HHHHHH
Q 043950          339 EAALAI  344 (458)
Q Consensus       339 ~a~~~L  344 (458)
                      .|+..|
T Consensus       343 ~Aittl  348 (355)
T 3tjz_B          343 LAITTL  348 (355)
T ss_dssp             ------
T ss_pred             HHHHHh
Confidence            555444

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.03  E-value=7.8e-09  Score=83.64  Aligned_cols=225  Identities=17%  Similarity=0.125  Sum_probs=170.6

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHH
Q 043950          192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ  271 (458)
Q Consensus       192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  271 (458)
                      .+.+..+..++...|+.++..++.++..+....+.......-..+++.+++++++.++.+...|++++..+..+.+-.-+
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            55778899999999999999999999999976544444444456899999999999999999999999999887654433


Q ss_pred             HHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCC
Q 043950          272 CIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG  351 (458)
Q Consensus       272 ~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  351 (458)
                      .+.  .+...+..++.++ ++-.+.+|+-.++-+--.+..       .+++..+.+++.+.+.+++..++.++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            333  3577888899987 888999999999988322211       136778888899999999999999999998754


Q ss_pred             C-HHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cC
Q 043950          352 T-HEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SH  429 (458)
Q Consensus       352 ~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~  429 (458)
                      . ++.     -++++..+-++++++|+.+++.++.++..++...-..          +. ...  -.+......++. -.
T Consensus       182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~----------~~-~~~--~~~~~~~v~~l~~~~  243 (265)
T 3b2a_A          182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE----------NV-KIE--LLKISRIVDGLVYRE  243 (265)
T ss_dssp             SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS----------CC-HHH--HHHHHHHHHHGGGCS
T ss_pred             CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH----------hH-HHH--HHHHHHHHHHHHHhc
Confidence            2 121     2346777888999999999999999999998763221          11 111  123456666776 66


Q ss_pred             CChHHHHHHHHHHHH
Q 043950          430 DNNGIREKAVKILET  444 (458)
Q Consensus       430 ~~~~v~~~a~~~l~~  444 (458)
                      ..|.++.+|..+-+.
T Consensus       244 ~~~~~~~ka~~v~~~  258 (265)
T 3b2a_A          244 GAPIIRLKAKKVSDL  258 (265)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHH
Confidence            789998888766543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.01  E-value=2.3e-09  Score=106.44  Aligned_cols=196  Identities=13%  Similarity=0.050  Sum_probs=149.2

Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHH-HHHhCCCCccchhhHHHHHhHhhcC-ChhhH
Q 043950          193 PALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRL-VELLGHPSPSVLTPALWTVGNIVMG-DDFQT  270 (458)
Q Consensus       193 ~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~  270 (458)
                      .++| +++.|+++++..+..++++|++++. ++...+.+...|++..+ ..+|.+++.+++..|+++|.||+.. ..+.+
T Consensus        35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3444 5567899999999999999999996 45556667777887765 5678889999999999999999865 46777


Q ss_pred             HHHHhcCChHHHHHHhccCCh---------------------hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh
Q 043950          271 QCIINHGAVPCLLALLIHNHK---------------------KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL  329 (458)
Q Consensus       271 ~~~~~~~~~~~l~~ll~~~~~---------------------~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll  329 (458)
                      ..+++.|+++.|..++... .                     ..+...++.+|.+++.++.+....+.+.+.++.|+..+
T Consensus       113 ~~l~~~~il~~L~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAV-LETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHH-HHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhh-HHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            8889999999999998542 1                     12344677888999988888888888889999999988


Q ss_pred             ccC---ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChH---HHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950          330 QDA---EFDIKKEAALAIANATVRGTHEQIKYLVREGCIK---PLCDLLLCVDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       330 ~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~---~L~~ll~~~~~~v~~~~~~~l~~l~~~  393 (458)
                      .+.   ..+++..|+.+|..++.. +.+....+.+.+...   .+..+.++.+ ..+..+++.+.+++..
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~~  259 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFTS  259 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhhh
Confidence            543   467999999999999885 557777777766433   3333333333 3455677888888753

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=99.00  E-value=7.4e-07  Score=81.35  Aligned_cols=321  Identities=12%  Similarity=0.151  Sum_probs=196.4

Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCC---chhhHHhhhCC-HHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          108 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSP---GCRNLVLREEA-LIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       108 ~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~-l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      ..++..++++|.. ...++.+.++..+..+..++|   .....+.+... ...+.......++.-....++.++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            3567889998875 778999999999999988876   32233233222 222333332344445556666666666543


Q ss_pred             CCCCChhhhhhhHH--HHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHHHHh--CcHHHHHHHhC----CC------
Q 043950          183 KPQPPFDQVRPALP--ALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVVIEA--GVCRRLVELLG----HP------  247 (458)
Q Consensus       183 ~~~~~~~~~~~~l~--~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~i~~L~~ll~----~~------  247 (458)
                      .+. .......++.  -+...+.+ ++.+.+..++.++..+...+.. ...+.+.  +.++.++.++.    +.      
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            322 3333444444  34444544 3345566678888877755543 3334433  23555544332    11      


Q ss_pred             -------CccchhhHHHHHhHhhcCChhhHHHHHhcCCh--HHHHHHhccCChhhHHHHHHHHHHHhhcCC----HHHHH
Q 043950          248 -------SPSVLTPALWTVGNIVMGDDFQTQCIINHGAV--PCLLALLIHNHKKSIKKVACWTISNITAGN----REQIQ  314 (458)
Q Consensus       248 -------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~----~~~~~  314 (458)
                             ...+...++.+++-++. +++....+...++.  +.++.+++.....++-+-+..++.|+....    .....
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   13456778888888876 55565666655543  567777877667899999999999999744    22233


Q ss_pred             H-HHHcCChHHHHHHhccC---ChhhHHHHHHHHHHhh---cCC----------------------CH----HHHHHHHH
Q 043950          315 A-VIDAGLIVPLVNVLQDA---EFDIKKEAALAIANAT---VRG----------------------TH----EQIKYLVR  361 (458)
Q Consensus       315 ~-l~~~~~~~~L~~ll~~~---~~~~~~~a~~~L~~l~---~~~----------------------~~----~~~~~l~~  361 (458)
                      . ++..++ +.++..|...   |+++....-.....+-   ..-                      ++    ++...+.+
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence            2 333334 4566666543   6665543322222211   100                      00    01111111


Q ss_pred             C--CChHHHHhhccC----------CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC
Q 043950          362 E--GCIKPLCDLLLC----------VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH  429 (458)
Q Consensus       362 ~--~~l~~L~~ll~~----------~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  429 (458)
                      +  .+++.|..++++          .|+.+...|+.=++.+++..+..             +..+.+.|+.+.+..|++|
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~h  458 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLNH  458 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTSC
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhcC
Confidence            1  247788888873          36778888888899999987764             6778899999999999999


Q ss_pred             CChHHHHHHHHHHHHh
Q 043950          430 DNNGIREKAVKILETY  445 (458)
Q Consensus       430 ~~~~v~~~a~~~l~~~  445 (458)
                      +|++|+..|...++++
T Consensus       459 ~d~~Vr~~AL~avQkl  474 (480)
T 1ho8_A          459 SDSRVKYEALKATQAI  474 (480)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999988875

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.90  E-value=1.1e-07  Score=77.00  Aligned_cols=187  Identities=16%  Similarity=0.137  Sum_probs=150.9

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      +.+..+..+|...|+.++..|+.+|.++...- +...+...-..+++.+++++.+.+ ..+...|+++|..+..+.|-..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence            45788899999999999999999999998874 344444444568999999999998 8999999999999998655444


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      +.+.  -+..++..++.++++-++..++..++.+-...+.       .+++..+..++ .+.+..++..++.++.+++..
T Consensus       111 ~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          111 KTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELV-VSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence            4443  2358899999999999999999999999322221       12466778888 999999999999999999986


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 043950          183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG  223 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~  223 (458)
                      .  ........++..+..+++++|+.+++.++.++-.+...
T Consensus       181 S--~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          181 S--ADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             C--SSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             c--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            4  23344577778888999999999999999999999854

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.84  E-value=1.8e-07  Score=83.53  Aligned_cols=318  Identities=13%  Similarity=0.073  Sum_probs=175.0

Q ss_pred             hhccHHHHHHhhcCC--CHHHHHHHHH-HHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950           21 KLEILPAMVAGVWSD--DNSLQLEATT-QFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG   97 (458)
Q Consensus        21 ~~~~i~~l~~~l~~~--~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~   97 (458)
                      +.+.++. .+.++..  ++.-...++. .+.-+..++ .-...++.  .+....++++.+++ ..++.-.-..+.+++..
T Consensus        24 k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~-~f~~~e~t--~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~   98 (355)
T 3tjz_B           24 KSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGE-HLGTTEAT--EAFFAMTKLFQSND-PTLRRMCYLTIKEMSCI   98 (355)
T ss_dssp             HHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTC-CCCHHHHH--HHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCC-CCchhHHH--HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCC
Confidence            3344555 3555543  4444444444 344444443 22222222  35677889999998 89999888888888885


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950           98 TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS  177 (458)
Q Consensus        98 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~  177 (458)
                      .++..      =++..|.+=++++++-+|..|+++++++.... -. +     ...+++-+.+ .+.++.+++.|+.+..
T Consensus        99 ~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~-~-----~l~~~lk~~L-~d~~pyVRk~A~l~~~  164 (355)
T 3tjz_B           99 AEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-ML-Q-----AIERYMKQAI-VDKVPSVSSSALVSSL  164 (355)
T ss_dssp             SSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-TH-H-----HHHHHHHHHH-TCSSHHHHHHHHHHHH
T ss_pred             HHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HH-H-----HHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence            33321      23677888888899999999999999995432 11 1     1334445555 8899999999999999


Q ss_pred             HhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC---Cccchhh
Q 043950          178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP---SPSVLTP  254 (458)
Q Consensus       178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~  254 (458)
                      .+....    .....+.++.+..++.+.++.++..++.++..+...+..         .+..++..+...   ++-.+..
T Consensus       165 kL~~~~----pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~  231 (355)
T 3tjz_B          165 HLLKCS----FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCM  231 (355)
T ss_dssp             HHTTTC----HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHH
T ss_pred             HHhccC----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHH
Confidence            998654    335578899999999999999999999999999865432         223333333332   2222233


Q ss_pred             HHHHHhHhhcCC-hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950          255 ALWTVGNIVMGD-DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE  333 (458)
Q Consensus       255 a~~~l~~l~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~  333 (458)
                      .++.+..++..+ +.     ....+++.+..+|++. ++.|..+|+.++..+......    .. ..++..|..++.+.+
T Consensus       232 llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d  300 (355)
T 3tjz_B          232 MIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPK  300 (355)
T ss_dssp             HHHHHTCC----------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSS
T ss_pred             HHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCC
Confidence            344444444333 11     2246778888889988 899999999999998542211    11 235677888899999


Q ss_pred             hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHH
Q 043950          334 FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGL  387 (458)
Q Consensus       334 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l  387 (458)
                      +.+|-.|+..|..+.... +.....     .-..+.+++.++|..+...|+..|
T Consensus       301 ~niryvaLr~L~~l~~~~-P~~v~~-----~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          301 AALRYAAVRTLNKVAMKH-PSAVTA-----CNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             SSSHHHHHHCC-------------------------------------------
T ss_pred             chHHHHHHHHHHHHHHHC-cHHHHH-----HHHHHHHHccCCcHhHHHHHHHHh
Confidence            999999999999987742 222211     345577888888888766555444

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.84  E-value=3.7e-08  Score=84.72  Aligned_cols=186  Identities=16%  Similarity=0.187  Sum_probs=142.4

Q ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950          154 IPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVI  232 (458)
Q Consensus       154 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  232 (458)
                      +.+...+ .+.+...+..++..|..+....+.........+++.+...+. +.+..++..++.+++.++..-........
T Consensus        18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3466677 788899999999999999876322222224677888999994 89999999999999999954332222222


Q ss_pred             HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHH
Q 043950          233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNRE  311 (458)
Q Consensus       233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~  311 (458)
                       ..+++.++..+.+++..+|..+..++..++...+  .     ..+++.+...+++. ++.+|..++..++.+.. ..++
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence             3488999999999999999999999999986433  1     13678889999988 99999999999999764 3232


Q ss_pred             H-HHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950          312 Q-IQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR  350 (458)
Q Consensus       312 ~-~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~  350 (458)
                      . ....+. .+++.+...+.+.++++|..|..+++.++..
T Consensus       168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            1 122222 4889999999999999999999999999764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.81  E-value=3.4e-08  Score=84.98  Aligned_cols=186  Identities=13%  Similarity=0.165  Sum_probs=141.8

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhh
Q 043950          112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV  191 (458)
Q Consensus       112 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  191 (458)
                      +.+...+.+.+...|..++..|..+....+.....- ....++.+...+.++.+..++..++.++..++......-....
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            457888889999999999999999986533211100 1124566666663478889999999999999965322223445


Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCC-hh-h
Q 043950          192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGD-DF-Q  269 (458)
Q Consensus       192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~-~~-~  269 (458)
                      ..++|.+...+.+.++.++..+..++..++....  ..     .+++.+...+++.++.+|..++.+++.+.... +. .
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            7889999999999999999999999999986543  11     36788999999999999999999999965443 33 2


Q ss_pred             HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      ....+ ..+++.+..++.++ ++.+|..|..+++.++.
T Consensus       170 ~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            22223 25899999999988 99999999999999985

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.76  E-value=2.8e-06  Score=84.65  Aligned_cols=271  Identities=14%  Similarity=0.126  Sum_probs=183.2

Q ss_pred             CHHHHHHhhc---CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 043950           67 VVPRFVEFLM---REDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS--------DDVREQAVWALGN  135 (458)
Q Consensus        67 ~i~~L~~ll~---~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--------~~~~~~a~~~L~~  135 (458)
                      ++..|-+.|.   +++ +.++.-|+..|+-+..+...        .++..|...+.+.+        +.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            3555556665   344 78999999999998875432        13677777776544        6788889999998


Q ss_pred             hhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCChHHHHHHH
Q 043950          136 VAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLI-HLDDEEVLSDAC  214 (458)
Q Consensus       136 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~  214 (458)
                      +..++..  +     .++..|...+ .+.+......+..++..+..+..  .    ..++..|+..+ .+.+..++..+.
T Consensus       464 a~~GS~~--e-----ev~e~L~~~L-~dd~~~~~~~AalALGli~vGTg--n----~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSAN--I-----EVYEALKEVL-YNDSATSGEAAALGMGLCMLGTG--K----PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCC--H-----HHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCC--C----HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCC--H-----HHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccC--C----HHHHHHHHHHHhccCcHHHHHHHH
Confidence            7655422  1     1455677777 44445566678888887654421  2    23344444433 355778999999


Q ss_pred             HHHHHhccCChhhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhh
Q 043950          215 WTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKS  293 (458)
Q Consensus       215 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~  293 (458)
                      .+|+.+....++..         +.+++.|. +.++.+|..++.+++--..+....       ..++.|+..+.++.+..
T Consensus       530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred             HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence            99998876655443         44444454 467778888888876544433222       23555555555444778


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh-ccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 043950          294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL-QDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLL  372 (458)
Q Consensus       294 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll  372 (458)
                      +|+.|+.+|+.+..+.++         .++.++..+ .+.++.+|..|+.+|+.+..+.....        +++.|..+.
T Consensus       594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~--------aid~L~~L~  656 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS--------AIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--------HHHHHHHHc
Confidence            999999999998766532         466666644 56799999999999999987543211        366788888


Q ss_pred             cCCCHHHHHHHHHHHHHHHHh
Q 043950          373 LCVDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       373 ~~~~~~v~~~~~~~l~~l~~~  393 (458)
                      .++++.|+..|+.+|+.+...
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTT
T ss_pred             cCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999988754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.73  E-value=3.2e-07  Score=78.74  Aligned_cols=194  Identities=11%  Similarity=0.096  Sum_probs=142.5

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH-hhcCCCchhhHHhh-hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC-CCCh-
Q 043950          113 IFVKLLASPSDDVREQAVWALGN-VAADSPGCRNLVLR-EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP-QPPF-  188 (458)
Q Consensus       113 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~-  188 (458)
                      -+...+.+.+..-|..++..|.. ++.+.+.......+ ...+..+...+..+.+..++..++.++..++..-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35566788999999999999999 87554332200001 12455666666567788899999999999997544 3333 


Q ss_pred             hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChh
Q 043950          189 DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDF  268 (458)
Q Consensus       189 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  268 (458)
                      .....++|.++..+.+..+.++..+..++..++...+.....-.-..+++.+...+++.++.+|..++.+|+.++...+.
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            56678999999999999999999988888888754321110000013678899999999999999999999999865542


Q ss_pred             ---hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          269 ---QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       269 ---~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                         .....+...+++.+.+++.++ ++.||..|..+++.++.
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence               222333357899999999988 99999999999999875

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.66  E-value=1.8e-07  Score=80.35  Aligned_cols=191  Identities=10%  Similarity=0.049  Sum_probs=140.1

Q ss_pred             HHHHhcccccHHHHHHHHHHHHH-hhcCCCCCC--hhhhhhhHHHHHHhh-cCCChHHHHHHHHHHHHhccCCh-hhHH-
Q 043950          156 LLAQLNEHAKLSMLRIATWTLSK-LCKGKPQPP--FDQVRPALPALAQLI-HLDDEEVLSDACWTLSYLSYGTN-DKIQ-  229 (458)
Q Consensus       156 l~~~l~~~~~~~~~~~a~~~l~~-l~~~~~~~~--~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~-~~~~-  229 (458)
                      +...+ .+.+..-+..++..|.. ++.+.+...  ......++..+...+ ++.+..++..++.+++.++..-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34455 67888889999999999 876543322  222356788888889 78899999999999999985322 1221 


Q ss_pred             HHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCC
Q 043950          230 VVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN  309 (458)
Q Consensus       230 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  309 (458)
                      ... ..+++.++..+++....++..+..++-.++...+.......-..+++.+...+++. ++.+|..++.+|+.++...
T Consensus       100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            122 23789999999998888999998888888764321110000013678889999998 8999999999999998633


Q ss_pred             H---HHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          310 R---EQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       310 ~---~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                      +   ......+...++|.+..++.+.+.++|..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            2   344444424699999999999999999999999999875

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.57  E-value=5.7e-05  Score=69.12  Aligned_cols=324  Identities=12%  Similarity=0.080  Sum_probs=193.3

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh---hhHHHHHhCCCh-H-HHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 043950           65 AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS---MNTNVVIDHGAV-P-IFVKLLASPSDDVREQAVWALGNVAAD  139 (458)
Q Consensus        65 ~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~-~L~~ll~~~~~~~~~~a~~~L~~l~~~  139 (458)
                      ...+..++++|......++....+..+..+...++   .....+.+..-. . .+...+..++.-....+..++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            35678899999877668899999999999888665   333333433222 1 222233444455556666666666533


Q ss_pred             CCchhhHHhhhCCHH--HHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhh--hhhhHHHHHHhhc----C-------
Q 043950          140 SPGCRNLVLREEALI--PLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ--VRPALPALAQLIH----L-------  204 (458)
Q Consensus       140 ~~~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~l~~l~~ll~----~-------  204 (458)
                      .+...+.+  ...+.  .++..+....+...+..++.++..|.+.+..+....  ....+|.++..+.    +       
T Consensus       156 ~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            32211111  11222  355555332333445567788887777643222211  1234555544332    1       


Q ss_pred             ----C--ChHHHHHHHHHHHHhccCChhhHHHHHHhCcH--HHHHHHhCC-CCccchhhHHHHHhHhhcCCh----hhHH
Q 043950          205 ----D--DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVC--RRLVELLGH-PSPSVLTPALWTVGNIVMGDD----FQTQ  271 (458)
Q Consensus       205 ----~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i--~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~----~~~~  271 (458)
                          +  ...++..++.|++-++-... ..+.+...++.  ..|+.+++. ..+.+.+-++.++.|+....+    ....
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                1  24568889999998885444 55556655543  566666665 567888999999999987652    2222


Q ss_pred             -HHHhcCChHHHHHHhccCC--hhhHHHHHHHHHHHhhc-----C-CHHHHH----------------HHHH--------
Q 043950          272 -CIINHGAVPCLLALLIHNH--KKSIKKVACWTISNITA-----G-NREQIQ----------------AVID--------  318 (458)
Q Consensus       272 -~~~~~~~~~~l~~ll~~~~--~~~v~~~a~~~l~nl~~-----~-~~~~~~----------------~l~~--------  318 (458)
                       .++..+++ .+++.|....  |+++....-+..-.+-.     . ..++..                .++.        
T Consensus       313 ~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence             23334444 4555554321  44444433222222211     0 111111                1221        


Q ss_pred             --cCChHHHHHHhcc----------CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHH
Q 043950          319 --AGLIVPLVNVLQD----------AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEG  386 (458)
Q Consensus       319 --~~~~~~L~~ll~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~  386 (458)
                        ..++..|+++|.+          .|+.+..-|+.-++.++... +.....+.+-|+-..+..++.++|++|+..|+.+
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a  470 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PESIDVLDKTGGKADIMELLNHSDSRVKYEALKA  470 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence              1257889999973          36788888999999999874 4666677778999999999999999999999999


Q ss_pred             HHHHHHh
Q 043950          387 LENILKV  393 (458)
Q Consensus       387 l~~l~~~  393 (458)
                      +..++..
T Consensus       471 vQklm~~  477 (480)
T 1ho8_A          471 TQAIIGY  477 (480)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998754

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.56  E-value=3.2e-05  Score=80.37  Aligned_cols=389  Identities=9%  Similarity=0.031  Sum_probs=216.4

Q ss_pred             hccHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCC---------CccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 043950           22 LEILPAMVAGVWS--DDNSLQLEATTQFRILLSIER---------SPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWA   90 (458)
Q Consensus        22 ~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~   90 (458)
                      .+....|.+.+.+  .+..+|..|+..|.+.....-         ++..+..    +-..+++.+.++. ..+|..++.+
T Consensus        34 p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~----ik~~ll~~l~~~~-~~ir~~l~~~  108 (960)
T 1wa5_C           34 DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVEL----IKKEIVPLMISLP-NNLQVQIGEA  108 (960)
T ss_dssp             TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHH----HHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHH----HHHHHHHHHHhCC-HHHHHHHHHH
Confidence            3455667777754  368899999999999875310         1112222    3344555555566 7999999999


Q ss_pred             HHHHcCCC-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC------chhhHHh--hhCCHHHHHHH--
Q 043950           91 LTNIASGT-SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP------GCRNLVL--REEALIPLLAQ--  159 (458)
Q Consensus        91 L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~--~~~~l~~l~~~--  159 (458)
                      +..++... ++.-     .+.++.|++.+.++++..+..++.++..++....      +.+..+.  -....++++..  
T Consensus       109 ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~  183 (960)
T 1wa5_C          109 ISSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLK  183 (960)
T ss_dssp             HHHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988721 1100     2568888988888888888999999999986321      1111110  01123333332  


Q ss_pred             -----hcccc-c-------HHHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC------C---------hHHH
Q 043950          160 -----LNEHA-K-------LSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLD------D---------EEVL  210 (458)
Q Consensus       160 -----l~~~~-~-------~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~------~---------~~~~  210 (458)
                           +.... +       ..+...++.++..+.... +..........++.+..++...      +         ..++
T Consensus       184 ~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk  263 (960)
T 1wa5_C          184 TVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVK  263 (960)
T ss_dssp             HHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHH
Confidence                 22211 1       123334666666665432 2111112244455555555321      1         2466


Q ss_pred             HHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC-----CCCccchhhHHHHHhHhhcCChhhHHHHHh-cCChHHH--
Q 043950          211 SDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-----HPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCL--  282 (458)
Q Consensus       211 ~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l--  282 (458)
                      ..++.++..+.....+...... ..+++...+.+.     ...+.++..++..+..++.... . ..++. .+.++.+  
T Consensus       264 ~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~-~~~~~~~~~l~~li~  340 (960)
T 1wa5_C          264 SSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-Y-FEIFNNESAMNNITE  340 (960)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-H-HGGGCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-H-HHHHcCchHHHHHHH
Confidence            7788888887754443332222 235555566553     2345677788888887765322 1 11111 1222222  


Q ss_pred             ---HHHhcc----------------------CChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc------c
Q 043950          283 ---LALLIH----------------------NHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ------D  331 (458)
Q Consensus       283 ---~~ll~~----------------------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~------~  331 (458)
                         +..+.-                      +.....|..|..++..++...++..   .. .+++.+...+.      +
T Consensus       341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~  416 (960)
T 1wa5_C          341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPS  416 (960)
T ss_dssp             HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC---
T ss_pred             HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcc
Confidence               222210                      1012567788888888876443221   11 13344444444      4


Q ss_pred             CChhhHHHHHHHHHHhhcCCC-HH----------HHHHHHHCCChHHHHhhccCC---CHHHHHHHHHHHHHHHHhchhh
Q 043950          332 AEFDIKKEAALAIANATVRGT-HE----------QIKYLVREGCIKPLCDLLLCV---DPKIVTVCLEGLENILKVGEAE  397 (458)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~~~~-~~----------~~~~l~~~~~l~~L~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~  397 (458)
                      .+...+..|+.+++.++.++. ..          ....+..    ..+...+.++   ++.++..++++++++...... 
T Consensus       417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-  491 (960)
T 1wa5_C          417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-  491 (960)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-
T ss_pred             hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-
Confidence            567889999999999976421 00          1111111    1223333445   889999999999998764311 


Q ss_pred             cccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950          398 KNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG  448 (458)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  448 (458)
                                 .+...+     +..+.+.+.++++.|+..|...+.++.+.
T Consensus       492 -----------~~l~~~-----l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          492 -----------AQLIEL-----MPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             -----------HHHHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             -----------HHHHHH-----HHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence                       112222     45566666677899999999999998874

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.54  E-value=7.2e-05  Score=77.76  Aligned_cols=344  Identities=9%  Similarity=0.014  Sum_probs=194.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC------h
Q 043950           26 PAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT------S   99 (458)
Q Consensus        26 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~------~   99 (458)
                      ..+++.+.+++..++...+.++..++..+-+..+     .++++.|++.+++++ +..+..++.++..++...      +
T Consensus        88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~  161 (960)
T 1wa5_C           88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSD  161 (960)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcCh
Confidence            3556666666688888888888888775322222     257899999998877 688889999999988732      1


Q ss_pred             hhHHHH---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhc-CCCchh-hHHhhhCCHHHHHH
Q 043950          100 MNTNVV---IDHGAVPIFVK-------LLASPSD---------DVREQAVWALGNVAA-DSPGCR-NLVLREEALIPLLA  158 (458)
Q Consensus       100 ~~~~~~---~~~~~i~~L~~-------ll~~~~~---------~~~~~a~~~L~~l~~-~~~~~~-~~~~~~~~l~~l~~  158 (458)
                      +.+..+   +. ...+.+++       .+.+...         .+...++.++.++.. +.+..- +.+  ...++.+..
T Consensus       162 ~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~  238 (960)
T 1wa5_C          162 ELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHK  238 (960)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHH
Confidence            222211   11 12333333       2443211         233346666666653 223211 111  112333344


Q ss_pred             Hhccc-----cc---------HHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-----CCChHHHHHHHHHHHH
Q 043950          159 QLNEH-----AK---------LSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-----LDDEEVLSDACWTLSY  219 (458)
Q Consensus       159 ~l~~~-----~~---------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-----~~~~~~~~~~~~~l~~  219 (458)
                      .+...     .+         ..++..++.++..+....+..-......+++.....+.     ..+..++..++..+..
T Consensus       239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~  318 (960)
T 1wa5_C          239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA  318 (960)
T ss_dssp             HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred             HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence            44221     11         24667778888877754322111223455555555554     3457788888888888


Q ss_pred             hccCChhhHH----HHHHhCcH-HHHHHHhC-----------------------CCCccchhhHHHHHhHhhcCChhhHH
Q 043950          220 LSYGTNDKIQ----VVIEAGVC-RRLVELLG-----------------------HPSPSVLTPALWTVGNIVMGDDFQTQ  271 (458)
Q Consensus       220 l~~~~~~~~~----~~~~~~~i-~~L~~ll~-----------------------~~~~~~~~~a~~~l~~l~~~~~~~~~  271 (458)
                      ++........    .++. .++ ..++..+.                       +.....|..|..+|..++...++..-
T Consensus       319 ~~~~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~  397 (960)
T 1wa5_C          319 VTRIPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVT  397 (960)
T ss_dssp             HHTSHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HhCcHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHH
Confidence            7744321100    1111 122 22333332                       11235677888888888765542211


Q ss_pred             HHHhcCChHHHHHHhc------cCChhhHHHHHHHHHHHhhcC---CH---H------HHHHHHHcCChHHHHHHhccC-
Q 043950          272 CIINHGAVPCLLALLI------HNHKKSIKKVACWTISNITAG---NR---E------QIQAVIDAGLIVPLVNVLQDA-  332 (458)
Q Consensus       272 ~~~~~~~~~~l~~ll~------~~~~~~v~~~a~~~l~nl~~~---~~---~------~~~~l~~~~~~~~L~~ll~~~-  332 (458)
                          ..+++.+...+.      ++ +...|+.|..+++.++.+   ..   .      ....++..-++    ..+.+. 
T Consensus       398 ----~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~----p~l~~~~  468 (960)
T 1wa5_C          398 ----NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIA----PDLTSNN  468 (960)
T ss_dssp             ----HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTH----HHHHCSS
T ss_pred             ----HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhH----HHhcCCC
Confidence                123445555555      34 678899999999999752   11   0      22222211122    334555 


Q ss_pred             --ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950          333 --EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       333 --~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~  393 (458)
                        ++.+|..|+|+++.++..-.++....     +++.++..+.+++..|+..|+.++.++++.
T Consensus       469 ~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          469 IPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence              78999999999999987654443333     577788888888899999999999999874

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.54  E-value=1.6e-08  Score=77.77  Aligned_cols=120  Identities=17%  Similarity=0.122  Sum_probs=91.6

Q ss_pred             hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH
Q 043950          234 AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI  313 (458)
Q Consensus       234 ~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~  313 (458)
                      ...++.+..+|+++++.+|..|+++|+.+..            ..++.|+.+|.++ ++.+|..|+++|+++..  +.  
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~--   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER--   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence            4567889999999999999999999987642            1258899999988 99999999999999852  22  


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHH
Q 043950          314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLEN  389 (458)
Q Consensus       314 ~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~  389 (458)
                             .++.|+..+.++++.+|..|+++|+++.   ++.         .++.|..+++++++.|+..+..+|.+
T Consensus        74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIG---GER---------VRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -------HHHHHHHHHHHCCTHHHHHHHHHHHHHC---SHH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -------HHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                   4788999999999999999999999985   222         36778888888999999999888764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.53  E-value=3.2e-08  Score=76.04  Aligned_cols=121  Identities=18%  Similarity=0.174  Sum_probs=93.3

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh
Q 043950           65 AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR  144 (458)
Q Consensus        65 ~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  144 (458)
                      ...++.+..+|++++ +.+|..|++.|+.+...            .++.|+.+++++++.+|..++++|+++..      
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence            456888999999988 79999999998876541            26899999999999999999999999842      


Q ss_pred             hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950          145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL  220 (458)
Q Consensus       145 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l  220 (458)
                           ...++.++..+ .++++.++..++++|..+..          ...++.|..+++++++.++..+.++|..+
T Consensus        72 -----~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 -----ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 12478888888 78889999999999999852          46788999999999999999999988753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.50  E-value=2e-05  Score=79.52  Aligned_cols=307  Identities=13%  Similarity=0.133  Sum_probs=211.8

Q ss_pred             hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950           19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT   98 (458)
Q Consensus        19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~   98 (458)
                      ......+..+++.+...+..-+..++..+..+..+......   ...+++..|.+.+.+..+ .  +.|+.++..++...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~k~~-~--~~a~~~~~~~~~~~   83 (986)
T 2iw3_A           10 QQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHD---VPEHFFGELAKGIKDKKT-A--ANAMQAVAHIANQS   83 (986)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS---CCHHHHHHHHHHHTSHHH-H--HHHHHHHHHHTCTT
T ss_pred             cchHHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccc---cchhHHHHHHHHHhccCC-H--HHHHHHHHHHHHhc
Confidence            44455566677777765566667788888888665311111   112577888888877652 3  88999999998533


Q ss_pred             h---hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHH
Q 043950           99 S---MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWT  175 (458)
Q Consensus        99 ~---~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~  175 (458)
                      .   ..-..++  +.++.++....+....+|..|-.+...+...-+...  +  ...++.++..+.....-..+..++.+
T Consensus        84 ~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~  157 (986)
T 2iw3_A           84 NLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAA  157 (986)
T ss_dssp             TCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             CCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHH
Confidence            2   2212222  678999999888889999999888888775443321  1  34688999999555567888999999


Q ss_pred             HHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC--ChhhHHHHHHhCcHHHHHHHhCCCCccchh
Q 043950          176 LSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG--TNDKIQVVIEAGVCRRLVELLGHPSPSVLT  253 (458)
Q Consensus       176 l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  253 (458)
                      +..++...+..-......++|.+...+.+..+++...+..++..+|..  +.+.      ...+|.|++.+.+++.  ..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~  229 (986)
T 2iw3_A          158 FSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VP  229 (986)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HH
T ss_pred             HHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hH
Confidence            999997644333344478888888999999999999988888888742  2211      1478999999998753  44


Q ss_pred             hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc--CCHHHHHHHHHcCChHHHHHHhcc
Q 043950          254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA--GNREQIQAVIDAGLIVPLVNVLQD  331 (458)
Q Consensus       254 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~  331 (458)
                      .+...|+.-+.-.. .....+ +=.+|.|..-|... ...+++.++-++.|+|.  +++.....++. ..+|-+......
T Consensus       230 ~~~~~l~~~tfv~~-v~~~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~  305 (986)
T 2iw3_A          230 ETVHLLGATTFVAE-VTPATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFAT  305 (986)
T ss_dssp             HHHHHHTTCCCCSC-CCHHHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTT
T ss_pred             HHHHHhhcCeeEee-ecchhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhc
Confidence            45555554433221 111111 12467777778777 77899999999999997  67776666654 477777776654


Q ss_pred             -CChhhHHHHHHHHHHhhc
Q 043950          332 -AEFDIKKEAALAIANATV  349 (458)
Q Consensus       332 -~~~~~~~~a~~~L~~l~~  349 (458)
                       .+|++|.-|..++..+..
T Consensus       306 ~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          306 IADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             CCSHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence             489999999888888843

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.39  E-value=2.3e-05  Score=79.20  Aligned_cols=296  Identities=14%  Similarity=0.110  Sum_probs=200.8

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC--CChhhh
Q 043950          114 FVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ--PPFDQV  191 (458)
Q Consensus       114 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~  191 (458)
                      +.+-+...+..-+..+...+.++.......+.  ...+.+..+.+.+.+..+.   +.|+.++..++.....  ......
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEHD--VPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS--CCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhccccccc--cchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence            33334432233335566667776544322211  1235677777777443344   8899999999976522  233444


Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-ChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCChhh
Q 043950          192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYG-TNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDDFQ  269 (458)
Q Consensus       192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~  269 (458)
                      -+.+|.+.....+.+..++..+-.++..+... ++...     ..+++.|+..+.+. .+..+..|+.++..++...+..
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~  168 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ  168 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence            57788888888888899998888777777643 33222     34678888888764 6899999999999999766655


Q ss_pred             HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc--CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950          270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA--GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA  347 (458)
Q Consensus       270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l  347 (458)
                      ...-+ ..++|.+-..+-+. .++|+..|..++..+|.  ++.+.      ..++|.|++.+.+++.  ..+++..|+.-
T Consensus       169 ~~~~~-~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          169 VALRM-PELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGAT  238 (986)
T ss_dssp             HHHHH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred             HHHhc-cchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence            44333 46889999999888 89999999999999986  44321      2478999999987633  55667777666


Q ss_pred             hcCCC--HHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHh
Q 043950          348 TVRGT--HEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEG  425 (458)
Q Consensus       348 ~~~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  425 (458)
                      +...+  ......     .++.|.+-|......+.+++.-++.|+++..++..       +..+|...     .+..+..
T Consensus       239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~-------~~~~f~~~-----l~p~~~~  301 (986)
T 2iw3_A          239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ-------VIAPFLGK-----LLPGLKS  301 (986)
T ss_dssp             CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHTT-----THHHHHH
T ss_pred             eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH-------HHhhhhhh-----hhhHHHH
Confidence            55432  222222     36777777888888899999999999999877653       12222222     2666666


Q ss_pred             h-hcCCChHHHHHHHHHHHHhc
Q 043950          426 L-KSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       426 l-~~~~~~~v~~~a~~~l~~~~  446 (458)
                      . ....+|++++.|.+.+.++.
T Consensus       302 ~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          302 NFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HTTTCCSHHHHHHHHHHHHHHH
T ss_pred             HhhccCCHHHHHHHHHHHHHHH
Confidence            4 45688999988888887773

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.38  E-value=1.4e-05  Score=69.45  Aligned_cols=195  Identities=14%  Similarity=0.095  Sum_probs=141.9

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH
Q 043950          195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII  274 (458)
Q Consensus       195 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~  274 (458)
                      ...++.-|.+.+.+.+..++.-|..+...+...+..++..+++..|++.....+...+..++.++.++..+.......+-
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            34566777788888899999999986656667888899999999999999999999999999999999875444433333


Q ss_pred             hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH----------cCChHHHHHHhc---cCChhhHHHHH
Q 043950          275 NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID----------AGLIVPLVNVLQ---DAEFDIKKEAA  341 (458)
Q Consensus       275 ~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~----------~~~~~~L~~ll~---~~~~~~~~~a~  341 (458)
                      ...++..+..++.+. +..|.+.|...|-.++..++.....+.+          ...++.|+.+|+   +.|.+++.+|+
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            566889999999976 8899999999999998644323222221          124889999997   67899999998


Q ss_pred             HHHHHhhcCCC-HH----HHHHHHHCCChHHHHhhccCC--CHHHHHHHHHHHHHHH
Q 043950          342 LAIANATVRGT-HE----QIKYLVREGCIKPLCDLLLCV--DPKIVTVCLEGLENIL  391 (458)
Q Consensus       342 ~~L~~l~~~~~-~~----~~~~l~~~~~l~~L~~ll~~~--~~~v~~~~~~~l~~l~  391 (458)
                      ..+..+....+ .+    ....+.+.|.-..+...++..  +++++.+ +.+.....
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q-l~iyE~~~  334 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ-LVLYENAL  334 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH-HHHHHHHh
Confidence            88877766543 23    233444556555666667654  6666655 34444433

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.35  E-value=8.5e-05  Score=77.42  Aligned_cols=329  Identities=11%  Similarity=0.025  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHhcC-CCCccHHHHHHcCCHHHHHHhhc----------------CCCCHHHHHHHHHHHHHHcCCChh
Q 043950           38 SLQLEATTQFRILLSI-ERSPRIEDVIQAGVVPRFVEFLM----------------REDYPQLQYEAAWALTNIASGTSM  100 (458)
Q Consensus        38 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~i~~L~~ll~----------------~~~~~~i~~~a~~~L~~l~~~~~~  100 (458)
                      .++..++.++...+.. .-+..    ....+++.+.. +.                .++ ++++..|+.++..+....+.
T Consensus       204 ~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~  277 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC  277 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred             hHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence            6788888888876652 10111    22345666665 41                133 78999999999999874221


Q ss_pred             -hHHHHHhCCChHHHHHh-------hCCCC---HHHHHHHHHHHHHhhcCCCch-hhHHh-----hh----CCHHHHHHH
Q 043950          101 -NTNVVIDHGAVPIFVKL-------LASPS---DDVREQAVWALGNVAADSPGC-RNLVL-----RE----EALIPLLAQ  159 (458)
Q Consensus       101 -~~~~~~~~~~i~~L~~l-------l~~~~---~~~~~~a~~~L~~l~~~~~~~-~~~~~-----~~----~~l~~l~~~  159 (458)
                       .+...+. .+++.++.+       +...+   .+.....+..+..++...+.. .+.+.     ..    ..++.++..
T Consensus       278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~  356 (971)
T 2x1g_F          278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHC  356 (971)
T ss_dssp             GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH
Confidence             1111111 112333221       23334   366666777777766432211 10000     01    233444443


Q ss_pred             hcc----cccHHHHHHHHHHHHHhhcCC--------CCCCh----hhhhhhHHHHHHhhcCCC--------h-------H
Q 043950          160 LNE----HAKLSMLRIATWTLSKLCKGK--------PQPPF----DQVRPALPALAQLIHLDD--------E-------E  208 (458)
Q Consensus       160 l~~----~~~~~~~~~a~~~l~~l~~~~--------~~~~~----~~~~~~l~~l~~ll~~~~--------~-------~  208 (458)
                      ...    ..++++...+++.+..++...        .....    .....+++.++..+..++        +       .
T Consensus       357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~  436 (971)
T 2x1g_F          357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC  436 (971)
T ss_dssp             HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred             HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence            322    246778888988888876511        01111    122344455554443211        1       2


Q ss_pred             HHHHHHHHHHHhccCCh-hhHHHHHHhCcHHHHHHHhCC-----CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHH
Q 043950          209 VLSDACWTLSYLSYGTN-DKIQVVIEAGVCRRLVELLGH-----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL  282 (458)
Q Consensus       209 ~~~~~~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l  282 (458)
                      .+..+..++..++.... .....     +++.+...+.+     .++..++.++.+++.++.+......     ..++.+
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l  506 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRL  506 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHH
Confidence            44555556666554332 11121     22333333332     5778899999999999876543321     233333


Q ss_pred             HHHh---c--cCChhhHHHHHHHHHHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHH
Q 043950          283 LALL---I--HNHKKSIKKVACWTISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHE  354 (458)
Q Consensus       283 ~~ll---~--~~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  354 (458)
                      +.++   .  ++ ++.+|..++|+++.++.   .++++..     .+++.++..+ +  +.++..|++++.+++......
T Consensus       507 ~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~  577 (971)
T 2x1g_F          507 MRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ  577 (971)
T ss_dssp             HHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh
Confidence            3333   2  23 78999999999999985   1222222     2566666666 2  789999999999999765444


Q ss_pred             HHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhc
Q 043950          355 QIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       355 ~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ...++  ..++..+..++..  -+.+.+..++.++..++...
T Consensus       578 l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~  617 (971)
T 2x1g_F          578 LKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL  617 (971)
T ss_dssp             HHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             ccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence            33332  2356667777776  35678888999999998753

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.32  E-value=2.2e-05  Score=68.19  Aligned_cols=188  Identities=12%  Similarity=0.119  Sum_probs=142.8

Q ss_pred             HHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHH-H
Q 043950          240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI-D  318 (458)
Q Consensus       240 L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~  318 (458)
                      +++-|.+.+...++.+++-|..+...+......++..+++..|+.+.... +...+..+..++.++..+. ..+.-++ .
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~  200 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFV-DGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSH-HHHHHHHHC
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhcc-ccccchhCC
Confidence            33445556677788899999986666778889999999999999999998 9999999999999998753 4454555 3


Q ss_pred             cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH--------C--CChHHHHhhcc---CCCHHHHHHHHH
Q 043950          319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR--------E--GCIKPLCDLLL---CVDPKIVTVCLE  385 (458)
Q Consensus       319 ~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--------~--~~l~~L~~ll~---~~~~~v~~~~~~  385 (458)
                      ..++..+..++.+.+..+.+.|+..|..++...+... ..+.+        .  --++.|+..++   ..|.+++.+++.
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~-~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNA-PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccc-hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            4588889999998889999999999999987653111 11111        1  23788999997   678999999999


Q ss_pred             HHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC--ChHHHHH
Q 043950          386 GLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD--NNGIREK  437 (458)
Q Consensus       386 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~~  437 (458)
                      +|..++...+...       ..+.+...+.+.|.-+.+...+...  +++++++
T Consensus       280 LIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          280 LINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            9999998766432       1345678888888777888876665  6676644

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.31  E-value=0.00023  Score=73.57  Aligned_cols=341  Identities=11%  Similarity=0.098  Sum_probs=186.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCC---h--hhHHHHHh
Q 043950           34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFV-EFLMREDYPQLQYEAAWALTNIASGT---S--MNTNVVID  107 (458)
Q Consensus        34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~~~~  107 (458)
                      ++++++...++.++....+-   -....+.+.++++.++ .++.  + ++++..|+.+|..+....   +  .....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            45677778888888888653   3456777888999999 8875  3 789999999999998732   2  12211110


Q ss_pred             --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhcCC-------CchhhHHhhhCCHHHHHHHhcccc
Q 043950          108 --HGAVPIF--------------VKLLASPSDDVREQAVWALGNVAADS-------PGCRNLVLREEALIPLLAQLNEHA  164 (458)
Q Consensus       108 --~~~i~~L--------------~~ll~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~l~~~l~~~~  164 (458)
                        .+.++.+              .......+.+..+..+..+..+....       +..+..+.  .++..++... ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              11112234566666666665554321       11111111  1223444433 455


Q ss_pred             cHHHHHHHHHHHHHhhcCC--CCCChhhhh----hhHHHHHHhhcCCC-------------------hH--HHHHHH-HH
Q 043950          165 KLSMLRIATWTLSKLCKGK--PQPPFDQVR----PALPALAQLIHLDD-------------------EE--VLSDAC-WT  216 (458)
Q Consensus       165 ~~~~~~~a~~~l~~l~~~~--~~~~~~~~~----~~l~~l~~ll~~~~-------------------~~--~~~~~~-~~  216 (458)
                      +.++...++..-..+....  .........    .+++.++.-+.-++                   .+  ..-... .+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            7777777776655555421  111222333    34444444443221                   00  111111 22


Q ss_pred             HHHhccCC-hhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc-----
Q 043950          217 LSYLSYGT-NDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-----  288 (458)
Q Consensus       217 l~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-----  288 (458)
                      |..++.-. ++..+     -+++.+.+.+.+  .++..++.++++++.++.+..+....-.-..+++.|+.++.+     
T Consensus       437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            22222111 11111     133444444554  578899999999999987654432222223578888888864     


Q ss_pred             CChhhHHHHHHHHHHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHH--------
Q 043950          289 NHKKSIKKVACWTISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIK--------  357 (458)
Q Consensus       289 ~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~--------  357 (458)
                      + ...++..++|+++..+.   .+++....     ++..|+..+...++.++..|++++.+++..+......        
T Consensus       512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p  585 (1023)
T 4hat_C          512 N-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP  585 (1023)
T ss_dssp             H-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence            2 44567788899998875   33443332     4556777777777899999999999999754432210        


Q ss_pred             HHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950          358 YLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       358 ~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      ++-  ..+..+......-+++-+..+.++++.++...+.
T Consensus       586 ~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~  622 (1023)
T 4hat_C          586 FIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEERS  622 (1023)
T ss_dssp             HHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred             hHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence            110  1222333333344556667788888888876553

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.24  E-value=0.0024  Score=67.01  Aligned_cols=355  Identities=10%  Similarity=0.092  Sum_probs=189.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhc---C-CCC---ccH-----HHHHHc--CCHHHHHHhhcCCCCHHHHHHHH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLS---I-ERS---PRI-----EDVIQA--GVVPRFVEFLMREDYPQLQYEAA   88 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~---~-~~~---~~~-----~~~~~~--~~i~~L~~ll~~~~~~~i~~~a~   88 (458)
                      +.++.+++.++ .++..+..++..|..+..   . ...   ...     ..+.+.  .+++.+..++....+++++..++
T Consensus       138 ~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL  216 (1049)
T 3m1i_C          138 EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATL  216 (1049)
T ss_dssp             THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            45788888886 445455555555554431   1 101   001     112221  23344455555444478999999


Q ss_pred             HHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCC--Cc---hhhHHhhhCCHHHHHHHhc-
Q 043950           89 WALTNIASGTSMNTNVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAADS--PG---CRNLVLREEALIPLLAQLN-  161 (458)
Q Consensus        89 ~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~~~~l~~l~~~l~-  161 (458)
                      .++.+...--+  ...+.+...++.+. .++  .++.++..++.+|..+....  +.   ....+..  .++.++..+. 
T Consensus       217 ~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~  290 (1049)
T 3m1i_C          217 ESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIAT  290 (1049)
T ss_dssp             HHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHH
Confidence            99998766322  23355566677776 344  37899999999999998653  21   1111111  1122222110 


Q ss_pred             ----------------ccccHHHHHHHHHHHHHhhcCC------CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950          162 ----------------EHAKLSMLRIATWTLSKLCKGK------PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY  219 (458)
Q Consensus       162 ----------------~~~~~~~~~~a~~~l~~l~~~~------~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~  219 (458)
                                      .+.+.+.....+..+..+....      +.........+++.++.....++.++...++.....
T Consensus       291 si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~  370 (1049)
T 3m1i_C          291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN  370 (1049)
T ss_dssp             HTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             hhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                            1224444445555444332210      111122335567777777777788888888877766


Q ss_pred             hcc----CC--hhhHHHHHHhCcHHHHHHHhCCCCc----------------------cchhhHHHHHhHhhcCChhhHH
Q 043950          220 LSY----GT--NDKIQVVIEAGVCRRLVELLGHPSP----------------------SVLTPALWTVGNIVMGDDFQTQ  271 (458)
Q Consensus       220 l~~----~~--~~~~~~~~~~~~i~~L~~ll~~~~~----------------------~~~~~a~~~l~~l~~~~~~~~~  271 (458)
                      ++.    ..  ......++ ..+++.++..+..+++                      ..+..+..+|..++...+...-
T Consensus       371 l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l  449 (1049)
T 3m1i_C          371 LVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTE  449 (1049)
T ss_dssp             HHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHH
Confidence            664    11  11112222 1345566665543211                      0122345555555533332211


Q ss_pred             HHHhcCChHHHHHHhcc-CChhhHHHHHHHHHHHhhcCCHHHH-HHHHHcCChHHHHHHhcc-----CChhhHHHHHHHH
Q 043950          272 CIINHGAVPCLLALLIH-NHKKSIKKVACWTISNITAGNREQI-QAVIDAGLIVPLVNVLQD-----AEFDIKKEAALAI  344 (458)
Q Consensus       272 ~~~~~~~~~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~~~~~~L~~ll~~-----~~~~~~~~a~~~L  344 (458)
                      .    -+.+.+-..+.+ ..+++.++.++++++.++.+..... ..+.. .+++.+..+...     +++.++..+++++
T Consensus       450 ~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~l  524 (1049)
T 3m1i_C          450 E----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVV  524 (1049)
T ss_dssp             H----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence            1    123444455543 2277889999999999986422221 11111 244444443321     2344555688999


Q ss_pred             HHhhcC--CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950          345 ANATVR--GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       345 ~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      +.++..  ..+++..     .+++.++..+.++++.|+..|+.++.++++...
T Consensus       525 gry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          525 GQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             HHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            877643  1222222     257778888888899999999999999998644

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.17  E-value=0.00062  Score=70.94  Aligned_cols=390  Identities=9%  Similarity=0.037  Sum_probs=212.2

Q ss_pred             hccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCC---CccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950           22 LEILPAMVAGVW-SDDNSLQLEATTQFRILLSIER---SPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG   97 (458)
Q Consensus        22 ~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~   97 (458)
                      .+..+.+..+|. +.++.+|..|+..|.+.....-   ++..+..+...+++.+.+.- .+. +.++...+.++..++..
T Consensus        38 p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~-~~~-~~vr~kl~~~la~i~~~  115 (971)
T 2x1g_F           38 PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFA-GGP-KIVLNRLCISLGAYIVH  115 (971)
T ss_dssp             THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHT-TSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHHHH
Confidence            445666777776 4678999999999998876420   22233444445556555543 234 68999999999998874


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCC------CHHHHHHHHHHHHHhhcC----CCchh-----hHHhhhCCHHHHHHHh--
Q 043950           98 TSMNTNVVIDHGAVPIFVKLLASP------SDDVREQAVWALGNVAAD----SPGCR-----NLVLREEALIPLLAQL--  160 (458)
Q Consensus        98 ~~~~~~~~~~~~~i~~L~~ll~~~------~~~~~~~a~~~L~~l~~~----~~~~~-----~~~~~~~~l~~l~~~l--  160 (458)
                      ...  .   =.+.++.++..++++      ++..++.++.+|..++.+    .+..+     +.+.  ..++.++..+  
T Consensus       116 ~~p--~---Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~--~~~~~vl~ll~~  188 (971)
T 2x1g_F          116 MLG--E---WPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA--KRVQLVIHTVER  188 (971)
T ss_dssp             TTC--C---------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH--TTHHHHHHHHHH
T ss_pred             ccc--c---ccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            322  1   125678888888664      567888899998888742    11111     1111  1344444333  


Q ss_pred             --cccccH-------HHHHHHHHHHHHhhc--CCCCCChhhhhhhHHHHHHhhc----------------CCChHHHHHH
Q 043950          161 --NEHAKL-------SMLRIATWTLSKLCK--GKPQPPFDQVRPALPALAQLIH----------------LDDEEVLSDA  213 (458)
Q Consensus       161 --~~~~~~-------~~~~~a~~~l~~l~~--~~~~~~~~~~~~~l~~l~~ll~----------------~~~~~~~~~~  213 (458)
                        ....++       .++..++.++.....  ..+..   ....+++.+.. +.                .++++++..+
T Consensus       189 ~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a  264 (971)
T 2x1g_F          189 YLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESC  264 (971)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHH
T ss_pred             HHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHH
Confidence              222222       678888888876555  22222   44667777666 41                1467889999


Q ss_pred             HHHHHHhccCCh--hhHHHHHHhCcHHHHHH-------HhCCCCc---cchhhHHHHHhHhhcCChhhHH----------
Q 043950          214 CWTLSYLSYGTN--DKIQVVIEAGVCRRLVE-------LLGHPSP---SVLTPALWTVGNIVMGDDFQTQ----------  271 (458)
Q Consensus       214 ~~~l~~l~~~~~--~~~~~~~~~~~i~~L~~-------ll~~~~~---~~~~~a~~~l~~l~~~~~~~~~----------  271 (458)
                      +.++..+....+  +... .+. .+++.++.       .+...+.   ......+..+..++........          
T Consensus       265 ~~~l~~i~~~~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  342 (971)
T 2x1g_F          265 LKTMVNIIIQPDCHNYPK-TAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPEL  342 (971)
T ss_dssp             HHHHHHHHHCSGGGGCHH-HHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHH
T ss_pred             HHHHHHHHcCccccccHH-HHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            999999986433  1111 111 12233322       2233342   5666667777666543322211          


Q ss_pred             -HHHhcCChHHHHHHhcc----CChhhHHHHHHHHHHHhhcC--------C-H---HHHHHHHHcCChHHHHHHhccCC-
Q 043950          272 -CIINHGAVPCLLALLIH----NHKKSIKKVACWTISNITAG--------N-R---EQIQAVIDAGLIVPLVNVLQDAE-  333 (458)
Q Consensus       272 -~~~~~~~~~~l~~ll~~----~~~~~v~~~a~~~l~nl~~~--------~-~---~~~~~l~~~~~~~~L~~ll~~~~-  333 (458)
                       ..+ ..+++.++.+...    ..++.+...+++....++..        . +   ......+. .+++.++..+..++ 
T Consensus       343 ~~~l-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~p~~  420 (971)
T 2x1g_F          343 SILV-HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYA-HLTRILVRKSEQPDE  420 (971)
T ss_dssp             HHHH-HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH-HHHHHHHHHTSCCCT
T ss_pred             cHHH-HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HHHHHHHHHhcCCCc
Confidence             011 1345555665533    22678899999888887641        0 0   11112222 24455555543211 


Q ss_pred             --------------hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-----CCHHHHHHHHHHHHHHHHhc
Q 043950          334 --------------FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC-----VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       334 --------------~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-----~~~~v~~~~~~~l~~l~~~~  394 (458)
                                    ...|..+..++..++..........+     ++.+...+..     .+...++.++.+++.+.+..
T Consensus       421 ~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~  495 (971)
T 2x1g_F          421 KSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHF  495 (971)
T ss_dssp             TTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-
T ss_pred             ccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhc
Confidence                          13556677777777654433333332     2222333322     56778899999999886644


Q ss_pred             hhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc-CCChHHHHHHHHHHHHhcC
Q 043950          395 EAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS-HDNNGIREKAVKILETYWC  447 (458)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~  447 (458)
                      ....         ......+     ++.+..+.. ++++.|+..+.+++.+|.+
T Consensus       496 ~~~~---------~~~l~~l-----~~~l~~l~~~d~~~~vr~~a~~~l~~~~~  535 (971)
T 2x1g_F          496 GGEE---------KRQIPRL-----MRVLAEIPYEKLNVKLLGTALETMGSYCN  535 (971)
T ss_dssp             --------------CHHHHH-----HHHHHHSCTTTSCHHHHHHHHHHHHHTHH
T ss_pred             Chhh---------hHHHHHH-----HHHHHhcCccccCHHHHHHHHHHHHHHHH
Confidence            3321         0111222     334444442 3589999999999998864

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.09  E-value=0.0015  Score=68.53  Aligned_cols=348  Identities=10%  Similarity=0.075  Sum_probs=183.4

Q ss_pred             HHhhc-CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--hh---hH
Q 043950           29 VAGVW-SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT--SM---NT  102 (458)
Q Consensus        29 ~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~--~~---~~  102 (458)
                      .+.+. .++..++..++.++..++.--   ....+.+..+++.+++.+.. + ++++..|+.+|..+....  +.   ..
T Consensus       200 ~~~l~~~~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~  274 (1049)
T 3m1i_C          200 FQVLEQGSSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIK  274 (1049)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHH
Confidence            33343 345778888999998876532   23345556777777743322 4 799999999999998642  11   11


Q ss_pred             HHHHh--CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhc-------CCCchhhHHhhhCCHHHHHHH
Q 043950          103 NVVID--HGAVPIFVK-LL-------------ASPSDDVREQAVWALGNVAA-------DSPGCRNLVLREEALIPLLAQ  159 (458)
Q Consensus       103 ~~~~~--~~~i~~L~~-ll-------------~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~l~~l~~~  159 (458)
                      ..+..  .+.+..+.. ++             ...+.+.....+..+..+..       ..+..+..+  ...++.++..
T Consensus       275 ~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~  352 (1049)
T 3m1i_C          275 RQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQL  352 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHH
Confidence            11110  122222211 11             12234444445555444332       111112211  1234555554


Q ss_pred             hcccccHHHHHHHHHHHHHhhc----CCCC--CChhhhhhhHHHHHHhhcCC-------------------Ch---HHHH
Q 043950          160 LNEHAKLSMLRIATWTLSKLCK----GKPQ--PPFDQVRPALPALAQLIHLD-------------------DE---EVLS  211 (458)
Q Consensus       160 l~~~~~~~~~~~a~~~l~~l~~----~~~~--~~~~~~~~~l~~l~~ll~~~-------------------~~---~~~~  211 (458)
                      . ..++.++...++..+..++.    ....  ........+++.++..+.-+                   |.   ..+.
T Consensus       353 ~-~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~  431 (1049)
T 3m1i_C          353 S-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYK  431 (1049)
T ss_dssp             H-TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHH
T ss_pred             H-cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHH
Confidence            4 45577788888877777766    3211  11123345555555554311                   00   1222


Q ss_pred             HHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc-
Q 043950          212 DACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-  288 (458)
Q Consensus       212 ~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-  288 (458)
                      .+..+|..++......   +. .-+.+.+-..+..  .++..++.++++++.++.........-+-..+++.+..+... 
T Consensus       432 ~~~~~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~  507 (1049)
T 3m1i_C          432 SEREVLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK  507 (1049)
T ss_dssp             HHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence            3444555554222211   11 1133444455543  567789999999999976443321111112345555554331 


Q ss_pred             ---CChhhHHHHHHHHHHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHH------
Q 043950          289 ---NHKKSIKKVACWTISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQI------  356 (458)
Q Consensus       289 ---~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~------  356 (458)
                         .+.+.++..++|+++.++.   ..++...     .+++.++..+.+.++.++..|++++.+++..+.....      
T Consensus       508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~  582 (1049)
T 3m1i_C          508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRE  582 (1049)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTC
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence               1145566679999998874   2233222     2566778888888899999999999999985443221      


Q ss_pred             --HHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950          357 --KYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       357 --~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                        .++  ..++..+..++..-+.+-.....+++..++...+
T Consensus       583 ~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          583 SEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             SSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             CCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence              111  1233344444444444445666777777776543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.08  E-value=0.00028  Score=73.55  Aligned_cols=340  Identities=11%  Similarity=0.053  Sum_probs=185.0

Q ss_pred             cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCC
Q 043950           76 MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAADSPGCRNLVLREEA  152 (458)
Q Consensus        76 ~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  152 (458)
                      .+.+ -..++.++++++.++.+..+..     ...++.++..+   .++++.++..++|+++.++..-....+.+  ...
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHH
Confidence            3444 5789999999999998543311     12234444433   33578899999999999874311111222  357


Q ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCCh-hhHH
Q 043950          153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL--DDEEVLSDACWTLSYLSYGTN-DKIQ  229 (458)
Q Consensus       153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~-~~~~  229 (458)
                      ++.++..+ .+  +.++..|++++.+++......-......+++.+..++..  -+...+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            88888888 33  789999999999999754322223346666777777765  356788889999999885442 2222


Q ss_pred             HHHHhCcHHHHHHHh----CCC-Cccchh---hHHHHHhHhhcCCh----------------------hhHHHHHhcCCh
Q 043950          230 VVIEAGVCRRLVELL----GHP-SPSVLT---PALWTVGNIVMGDD----------------------FQTQCIINHGAV  279 (458)
Q Consensus       230 ~~~~~~~i~~L~~ll----~~~-~~~~~~---~a~~~l~~l~~~~~----------------------~~~~~~~~~~~~  279 (458)
                      ..++ .+++.+...+    ..+ +++.+.   ..+.+++.+...-.                      ..... +...++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  685 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF  685 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence            2222 2344443333    222 333333   33444444432110                      00111 122355


Q ss_pred             HHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHH----hccCChhhHHHHHHHHHHhhc--CCC
Q 043950          280 PCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNV----LQDAEFDIKKEAALAIANATV--RGT  352 (458)
Q Consensus       280 ~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~l----l~~~~~~~~~~a~~~L~~l~~--~~~  352 (458)
                      +.+..++... .+..+.+.++.++..++....+...     ..++.++..    +.....   ...++.+..++.  +.+
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~---~~~l~l~~~li~~f~~~  757 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQ---ASALDLTRQLVHIFAHE  757 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCC---HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhCCC
Confidence            6665665432 1567888899998887642111111     123333333    222111   123344444433  211


Q ss_pred             H---HHHHHHHHCCChHHHHhhcc---CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh
Q 043950          353 H---EQIKYLVREGCIKPLCDLLL---CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL  426 (458)
Q Consensus       353 ~---~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  426 (458)
                      .   .....+.+ .++..+..++.   ..+++++...+..+..++......-..      .......     .++.+...
T Consensus       758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~------~~~~~~~-----i~~~~~~~  825 (963)
T 2x19_B          758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC------ERLDVKA-----VFQCAVLA  825 (963)
T ss_dssp             TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC------TTSCHHH-----HHHHHHHH
T ss_pred             cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC------CcccHHH-----HHHHHHHH
Confidence            1   11111111 12333333333   246899999999999999876643210      0000111     13344445


Q ss_pred             hcCCChHHHHHHHHHHHHhcCC
Q 043950          427 KSHDNNGIREKAVKILETYWCG  448 (458)
Q Consensus       427 ~~~~~~~v~~~a~~~l~~~~~~  448 (458)
                      ..+++.++...+.+.+..++..
T Consensus       826 l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          826 LKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             TTCSCHHHHHHHHHHHHHHGGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHhc
Confidence            5688899999999999887653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.98  E-value=0.0019  Score=66.79  Aligned_cols=389  Identities=7%  Similarity=0.038  Sum_probs=198.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHcCC---ChhhHHHHH
Q 043950           35 DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIASG---TSMNTNVVI  106 (458)
Q Consensus        35 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~i~~~a~~~L~~l~~~---~~~~~~~~~  106 (458)
                      .+...+..++++++.++.+. .+....-.-..+++.|+.++.+     +. ..++..++|+++.++.-   .++...   
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k-~~v~~t~~~~lGry~~wl~~~~~~L~---  539 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNK-AVVASDIMYVVGQYPRFLKAHWNFLR---  539 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHTCHHHHHHCHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHHHHHHHHHHhccHHHHH---
Confidence            57889999999999997654 2222222223467888888764     22 34556677999887651   222211   


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhh------hCCHHHHHHHhc---ccccHHHHHHHHHHHH
Q 043950          107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR------EEALIPLLAQLN---EHAKLSMLRIATWTLS  177 (458)
Q Consensus       107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~l~~~l~---~~~~~~~~~~a~~~l~  177 (458)
                        .++..|+..+..+++.++..|++++.++|..   ++..+..      ...++.++..+.   ..-++.-...+..+++
T Consensus       540 --~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~  614 (1023)
T 4hat_C          540 --TVILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG  614 (1023)
T ss_dssp             --HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence              3456677777777899999999999999964   3333321      112444443332   2345566678888888


Q ss_pred             HhhcCCCCCC--hhhhhhhHHHHHH----hhc----C----CC---hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHH
Q 043950          178 KLCKGKPQPP--FDQVRPALPALAQ----LIH----L----DD---EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRL  240 (458)
Q Consensus       178 ~l~~~~~~~~--~~~~~~~l~~l~~----ll~----~----~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L  240 (458)
                      .+....+...  ......+++.+..    +..    +    .|   .......+.++..++..-......... .+++.+
T Consensus       615 ~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~-~i~~~~  693 (1023)
T 4hat_C          615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYNM  693 (1023)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHH
T ss_pred             HHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHH
Confidence            8888754322  1122333333222    221    1    11   123344455555554321111111111 122222


Q ss_pred             HHHhCC------------CC-----c------cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc----C----
Q 043950          241 VELLGH------------PS-----P------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH----N----  289 (458)
Q Consensus       241 ~~ll~~------------~~-----~------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~----~----  289 (458)
                      +.+.+.            +.     +      .+++..+..+.......+.. + .+...+++++++.+-.    .    
T Consensus       694 l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~-~-~~~~~~~~~l~~~vl~dY~~~~~~~  771 (1023)
T 4hat_C          694 LQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL-D-DVVKVLVEPLLNAVLEDYMNNVPDA  771 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH-H-HHHHHTHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH-H-HHHHHhHHHHHHHHHHHHHhCChhh
Confidence            222110            00     0      12223333333332212111 1 1223456666544422    1    


Q ss_pred             ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc---CChhhHHHHHHHHHHhhcCCCHHHHHH--HHHCCC
Q 043950          290 HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD---AEFDIKKEAALAIANATVRGTHEQIKY--LVREGC  364 (458)
Q Consensus       290 ~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~--l~~~~~  364 (458)
                      .++.+-.-....+..+.....+....+.+. ++..-+++++.   +.|+.|..-...+.++...+-......  -.-..+
T Consensus       772 r~~~vL~l~s~iv~~~~~~~~~~~~~il~~-vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~  850 (1023)
T 4hat_C          772 RDAEVLNCMTTVVEKVGHMIPQGVILILQS-VFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLF  850 (1023)
T ss_dssp             CCHHHHHHHHHHHHHHGGGCHHHHHHHHHH-HHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHH
Confidence            134444444444444443344555555553 56666677765   478888888888888766542221110  000114


Q ss_pred             hHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHh----hhcCCChHHHHHHHH
Q 043950          365 IKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEG----LKSHDNNGIREKAVK  440 (458)
Q Consensus       365 l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----l~~~~~~~v~~~a~~  440 (458)
                      ++.++-.++++++++...+++.+..++........        ..+...|-+.-+...+..    +.+..+.-..+.-..
T Consensus       851 ~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~  922 (1023)
T 4hat_C          851 VDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGN--------VPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQAL  922 (1023)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCS--------SHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHH
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHH
Confidence            55566677899999999999999999876664211        123444444444444443    234444433444444


Q ss_pred             HHHHh
Q 043950          441 ILETY  445 (458)
Q Consensus       441 ~l~~~  445 (458)
                      ++..+
T Consensus       923 ~l~~l  927 (1023)
T 4hat_C          923 LLMKL  927 (1023)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.93  E-value=0.0017  Score=67.65  Aligned_cols=331  Identities=13%  Similarity=0.052  Sum_probs=183.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 043950           33 WSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFL---MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG  109 (458)
Q Consensus        33 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~  109 (458)
                      .+.+...+..++.++..++.+-....      ...++.+++.+   .+++ +.++..++++++.++..-.... ... ..
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~------~~~l~~l~~~l~~l~~~~-~~vr~~~~~~l~~~~~~l~~~~-~~l-~~  529 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY------SDVVPGLIGLIPRISISN-VQLADTVMFTIGALSEWLADHP-VMI-NS  529 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC------CSHHHHHHHHGGGSCCCS-HHHHHHHHHHHHHTHHHHHHCH-HHH-TT
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh------hHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHhCH-HHH-HH
Confidence            45677888889999999876542211      12233344333   3344 8899999999999886212222 222 37


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHH----HHhcc-cccHHHHHHHHHHHHHhhcCCC
Q 043950          110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLL----AQLNE-HAKLSMLRIATWTLSKLCKGKP  184 (458)
Q Consensus       110 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~----~~l~~-~~~~~~~~~a~~~l~~l~~~~~  184 (458)
                      +++.++..+.+  +.++..|++++.+++...+   ..+.  ..++.++    ..+.. ..+...+..+..++..+....+
T Consensus       530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~---~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~  602 (963)
T 2x19_B          530 VLPLVLHALGN--PELSVSSVSTLKKICRECK---YDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ  602 (963)
T ss_dssp             THHHHHHHTTC--GGGHHHHHHHHHHHHHHTG---GGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhCC--chHHHHHHHHHHHHHHHHH---HHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence            78999988854  7899999999999996432   2221  2344444    34422 2356778888888888886543


Q ss_pred             -CCChhhhhhhHHHHHHhhc----CC-ChHHHH---HHHHHHHHhccCCh----------------------hhHHHHHH
Q 043950          185 -QPPFDQVRPALPALAQLIH----LD-DEEVLS---DACWTLSYLSYGTN----------------------DKIQVVIE  233 (458)
Q Consensus       185 -~~~~~~~~~~l~~l~~ll~----~~-~~~~~~---~~~~~l~~l~~~~~----------------------~~~~~~~~  233 (458)
                       .........+++.+...+.    .. +++.+.   ..+.+++.+...-.                      ..... ..
T Consensus       603 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  681 (963)
T 2x19_B          603 VEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VL  681 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HH
Confidence             2222233455555444432    22 343333   34444444432100                      01111 22


Q ss_pred             hCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh----ccCChhhHHHHHHHHHHHhhc
Q 043950          234 AGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL----IHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       234 ~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll----~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      ..+++.+..++..  .+..+.+.++.++..++....+...     ..++.++..+    .....+    ..+++++.++.
T Consensus       682 ~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~  752 (963)
T 2x19_B          682 QQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVH  752 (963)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHH
Confidence            2355555555543  3557888889888887643222211     2344444333    221122    23444444433


Q ss_pred             --CC----HHHHHHHHHcCChHHHHHHhcc---CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCC-----ChHHHHhhcc
Q 043950          308 --GN----REQIQAVIDAGLIVPLVNVLQD---AEFDIKKEAALAIANATVRGTHEQIKYLVREG-----CIKPLCDLLL  373 (458)
Q Consensus       308 --~~----~~~~~~l~~~~~~~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~-----~l~~L~~ll~  373 (458)
                        +.    .+.+..+++ .++..++.++..   .+++++......+..++.......    ....     +++.+...+.
T Consensus       753 ~f~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~----~~~~~~~~~i~~~~~~~l~  827 (963)
T 2x19_B          753 IFAHEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF----LCERLDVKAVFQCAVLALK  827 (963)
T ss_dssp             HHTTCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG----GCTTSCHHHHHHHHHHHTT
T ss_pred             HhCCCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH----cCCcccHHHHHHHHHHHcC
Confidence              11    122322222 134444444442   368999999999998886432211    1112     3445566677


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q 043950          374 CVDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       374 ~~~~~v~~~~~~~l~~l~~~~  394 (458)
                      .++..+...+++.+..++...
T Consensus       828 ~~~~~~~~~~l~~l~~l~~~~  848 (963)
T 2x19_B          828 FPEAPTVKASCGFFTELLPRC  848 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHGGGT
T ss_pred             CCCHHHHHHHHHHHHHHHhcC
Confidence            889999999999999998653

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.77  E-value=0.0011  Score=68.29  Aligned_cols=306  Identities=10%  Similarity=0.006  Sum_probs=168.2

Q ss_pred             CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh--HHhhhCCHHH
Q 043950           78 EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN--LVLREEALIP  155 (458)
Q Consensus        78 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~  155 (458)
                      .+ ++++..++.++.....-  -....+++.+.++.+..++.  +++++..|+.+|..+........+  .++..=.+..
T Consensus       205 ~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~  279 (980)
T 3ibv_A          205 KN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL  279 (980)
T ss_dssp             TC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence            55 78999999999999873  33455666678888888885  489999999999999865433222  1111100111


Q ss_pred             HHHHhcc-cccHHHHHHHHHHHHHhh------cCCCC-CC-------hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950          156 LLAQLNE-HAKLSMLRIATWTLSKLC------KGKPQ-PP-------FDQVRPALPALAQLIHLDDEEVLSDACWTLSYL  220 (458)
Q Consensus       156 l~~~l~~-~~~~~~~~~a~~~l~~l~------~~~~~-~~-------~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l  220 (458)
                      .+..+.. ..|.++.+..+..+..++      ...+. ..       .....++++.+..++.+++.++...++..+..+
T Consensus       280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~  359 (980)
T 3ibv_A          280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL  359 (980)
T ss_dssp             HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            1222211 456666554444433221      21121 11       133467888899999999888877776665554


Q ss_pred             ccC----C-----hhhHHHHHHhCcHHHHHHHhCCCCc----------------cchhhHHHHHhHhhcCChhhHHH-HH
Q 043950          221 SYG----T-----NDKIQVVIEAGVCRRLVELLGHPSP----------------SVLTPALWTVGNIVMGDDFQTQC-II  274 (458)
Q Consensus       221 ~~~----~-----~~~~~~~~~~~~i~~L~~ll~~~~~----------------~~~~~a~~~l~~l~~~~~~~~~~-~~  274 (458)
                      ...    .     ......++ ..+++.+++-+..++.                +.|......+-.++.-.++.... +.
T Consensus       360 l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~  438 (980)
T 3ibv_A          360 LVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY  438 (980)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            421    0     11111122 1355555555554321                12222221122222212222111 11


Q ss_pred             hcCChHHHHHHhc---cCChhhHHHHHHHHHHHhhcCCHHHHHHH-HHcC----ChHHHHHHhc-----cCChhhHHHHH
Q 043950          275 NHGAVPCLLALLI---HNHKKSIKKVACWTISNITAGNREQIQAV-IDAG----LIVPLVNVLQ-----DAEFDIKKEAA  341 (458)
Q Consensus       275 ~~~~~~~l~~ll~---~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~~----~~~~L~~ll~-----~~~~~~~~~a~  341 (458)
                      + .+.+.+.+.+.   +. ++..++.+..+++.++.+........ -...    +++.+..++.     ..++.++..++
T Consensus       439 ~-~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~  516 (980)
T 3ibv_A          439 S-AITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYM  516 (980)
T ss_dssp             H-HHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHH
T ss_pred             H-HHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            0 11222223332   23 67888999999999987532211100 0011    3455555554     56789999999


Q ss_pred             HHHHHhhcCCC--HHHHHHHHHCCChHHHHh--hccCCCHHHHHHHHHHHHHHHHhchh
Q 043950          342 LAIANATVRGT--HEQIKYLVREGCIKPLCD--LLLCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       342 ~~L~~l~~~~~--~~~~~~l~~~~~l~~L~~--ll~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      ++++..+..-.  ++....     +++.+++  .+.++++.|+.+|..++.++++....
T Consensus       517 ~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          517 EILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            99999876521  122111     3445555  55567888999999999999987654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.0013  Score=57.40  Aligned_cols=191  Identities=15%  Similarity=0.099  Sum_probs=126.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccH-HHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRI-EDVI--QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~--~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ..+| +-+.|.+.+...|..|+..+.++......... ....  -....+.+-+.+.+.+ ..++..++.++..++....
T Consensus        10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~   87 (278)
T 4ffb_C           10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA   87 (278)
T ss_dssp             -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred             hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence            3455 66789999999999999999988765321111 1111  1134566777888888 8999999999998875221


Q ss_pred             -----hhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950          100 -----MNTNVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT  173 (458)
Q Consensus       100 -----~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~  173 (458)
                           .......-..+++.|+. .+.+..+.++..+..++..++...... ..     .++.++..+ .+.++.++..++
T Consensus        88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l  160 (278)
T 4ffb_C           88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA  160 (278)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence                 11111122245677775 477888999999998888776433221 11     234455555 778899999888


Q ss_pred             HHHHHhhcCC--CCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 043950          174 WTLSKLCKGK--PQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY  222 (458)
Q Consensus       174 ~~l~~l~~~~--~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~  222 (458)
                      ..|..+....  .... ......+++.+..++.+.|+.+|..+..++..+-.
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            8888776542  1122 23345677788889999999999999999887754

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.55  E-value=0.0055  Score=63.29  Aligned_cols=345  Identities=12%  Similarity=0.056  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHH-hCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhC
Q 043950           82 QLQYEAAWALTNIASGTSMNTNVVI-DHG----AVPIFVKLLA-----SPSDDVREQAVWALGNVAADSPGCRNLVLREE  151 (458)
Q Consensus        82 ~i~~~a~~~L~~l~~~~~~~~~~~~-~~~----~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  151 (458)
                      ...+.++.+|+.++.+......... ...    +++.+..++.     .+.+.++..++++++..+..-..      ...
T Consensus       458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~~  531 (980)
T 3ibv_A          458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ESA  531 (980)
T ss_dssp             HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CCT
T ss_pred             HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cch
Confidence            5678899999998885433211110 011    3455555554     46799999999999998743211      223


Q ss_pred             CHHHHHHHhcc-----cccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-----CC---------------
Q 043950          152 ALIPLLAQLNE-----HAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL-----DD---------------  206 (458)
Q Consensus       152 ~l~~l~~~l~~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----~~---------------  206 (458)
                      .+++++..+..     ++++.++..|+.++.++|+.....-......++..+..++..     .+               
T Consensus       532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~  611 (980)
T 3ibv_A          532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNS  611 (980)
T ss_dssp             THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTT
T ss_pred             hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccC
Confidence            56666666644     456789999999999999876433333345566655555552     11               


Q ss_pred             -hHHHHHHHHHHHHhccC---ChhhHHHHHHh---CcHHHHHHHhCCCCc--c---chhhHHHHHhHhhcCChhh-----
Q 043950          207 -EEVLSDACWTLSYLSYG---TNDKIQVVIEA---GVCRRLVELLGHPSP--S---VLTPALWTVGNIVMGDDFQ-----  269 (458)
Q Consensus       207 -~~~~~~~~~~l~~l~~~---~~~~~~~~~~~---~~i~~L~~ll~~~~~--~---~~~~a~~~l~~l~~~~~~~-----  269 (458)
                       .+-+.....+++.+...   +.+......+.   ..+..+-..+.....  .   -....+.+++.++.+-+..     
T Consensus       612 ~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~  691 (980)
T 3ibv_A          612 DFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEV  691 (980)
T ss_dssp             THHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCC
T ss_pred             CchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence             11345566666666632   22222222221   123333344433211  1   1224566778887653221     


Q ss_pred             -HHHHHhcCChHHHHHHhc--cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHH
Q 043950          270 -TQCIINHGAVPCLLALLI--HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAIA  345 (458)
Q Consensus       270 -~~~~~~~~~~~~l~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~  345 (458)
                       ....+ ..+.+.+...+.  .. +..+|..++.++..+...-...+.     ..+|.++..+-.. +..-....++.++
T Consensus       692 p~~~~f-~~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~-----p~lp~~i~~ll~~~~~~e~~~fL~l~~  764 (980)
T 3ibv_A          692 AWLASF-NKASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDML-----PKVPQLISILLNSIDMNELVDVLSFIS  764 (980)
T ss_dssp             SHHHHH-HHHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHT-----TTHHHHHHHHHHHCCTTTHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence             11111 134555555555  34 678999999999999875434322     4677777765432 4444566778888


Q ss_pred             HhhcCCCHHHHHHHHH--CCChHHHHhhccCCC---------HHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHH
Q 043950          346 NATVRGTHEQIKYLVR--EGCIKPLCDLLLCVD---------PKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLV  414 (458)
Q Consensus       346 ~l~~~~~~~~~~~l~~--~~~l~~L~~ll~~~~---------~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  414 (458)
                      .++.....+....+-+  .-++..+..++..+.         ..+++.-+..+..++..+-..--.    .+.|  ...+
T Consensus       765 qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~----s~~n--~~~l  838 (980)
T 3ibv_A          765 QLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILF----TEEN--QVYF  838 (980)
T ss_dssp             HHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGG----SHHH--HTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhc----CCcc--hHHH
Confidence            8765433222111111  123455555565432         224455555566666533111000    0000  0000


Q ss_pred             HhcchHHHHHhh-hcCCChHHHHHHHHHHHHhcC
Q 043950          415 EEDEGFKKIEGL-KSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       415 ~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~  447 (458)
                        ...+..+..+ ...+++..++.|..++.++..
T Consensus       839 --~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~  870 (980)
T 3ibv_A          839 --DPLINSILHFANLVGEPATQKSSIALVSKMVS  870 (980)
T ss_dssp             --HHHHHHHHHHC-----CHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence              0113444444 234677888899998888743

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.53  E-value=0.00031  Score=64.89  Aligned_cols=217  Identities=15%  Similarity=0.104  Sum_probs=141.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHH-HHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED-VIQAGVVPRFVEFL---------MREDYPQLQYEAAWALTN   93 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~i~~L~~ll---------~~~~~~~i~~~a~~~L~~   93 (458)
                      ....|+..|-++..++|..|+.+|+.++...+....+. .......-.|+-++         ++.--.-||+.|+.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            57788888899999999999999999876542110000 00002222222222         122223699999999999


Q ss_pred             HcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950           94 IASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT  173 (458)
Q Consensus        94 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~  173 (458)
                      + ..-++.      ..++..++..+..+.-++|..++-.|..+.   +-..+   -.++++.++..| .+.+.+++..|+
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL-~D~DDDVRAVAA  320 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLL-SSPDEDIKLLSA  320 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhc-CCcccHHHHHHH
Confidence            9 644433      233444445557788999999999999881   11111   134567777777 677889999999


Q ss_pred             HHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccc
Q 043950          174 WTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD--EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSV  251 (458)
Q Consensus       174 ~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~  251 (458)
                      .+|.-++      .......++..+...|.+.|  ......++..|+.++..+...   ..+...+|.|..++.++-.+|
T Consensus       321 etLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSV  391 (800)
T 3oc3_A          321 ELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEV  391 (800)
T ss_dssp             HHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHH
T ss_pred             HHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHH
Confidence            9999888      22345667777777666433  223344455555555443211   112378999999999999999


Q ss_pred             hhhHHHHHhHhh
Q 043950          252 LTPALWTVGNIV  263 (458)
Q Consensus       252 ~~~a~~~l~~l~  263 (458)
                      |.+++.++..+.
T Consensus       392 R~AVL~TL~tfL  403 (800)
T 3oc3_A          392 RTSILNMVKNLS  403 (800)
T ss_dssp             HHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.0037  Score=54.45  Aligned_cols=188  Identities=11%  Similarity=0.076  Sum_probs=124.9

Q ss_pred             HHHHhCCCCccchhhHHHHHhHhhcCChhhH--HHHH--hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC------C
Q 043950          240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQT--QCII--NHGAVPCLLALLIHNHKKSIKKVACWTISNITAG------N  309 (458)
Q Consensus       240 L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~--~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~------~  309 (458)
                      +-.-+.+.++..|..|+..+..+....+...  ....  -....+.+...+.+. +..+...++.++..++..      .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            5577889999999999999988765443221  1111  123566677788777 889999999999988752      1


Q ss_pred             HHHHHHHHHcCChHHHHHH-hccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHH
Q 043950          310 REQIQAVIDAGLIVPLVNV-LQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLE  388 (458)
Q Consensus       310 ~~~~~~l~~~~~~~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~  388 (458)
                      .......+ ..+++.|+.- +.+....++..+..++..++......  ..     +++.+...+++.++.++..++..|.
T Consensus        93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~-----~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQ-----SVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence            11122222 2366777764 67777889989988888876543211  11     2566778889999999999999999


Q ss_pred             HHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          389 NILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       389 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      .++.......      .........     .++.+..+.++.+++|+..|..++-.+|.
T Consensus       165 ~~l~~fg~~~------~~~k~~l~~-----i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          165 ELMAAFGLTN------VNVQTFLPE-----LLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHTTTT------CCHHHHHHH-----HGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCc------CCchhHHHH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            9987533211      011111222     24567778899999999999999877754

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.44  E-value=0.0021  Score=54.68  Aligned_cols=181  Identities=14%  Similarity=0.044  Sum_probs=117.8

Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC----ChhhHHHH
Q 043950          198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG----DDFQTQCI  273 (458)
Q Consensus       198 l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~----~~~~~~~~  273 (458)
                      +...+-+.|..-+..++..|.......+......++- +++.+.-.+.+++..+...++.+|..+...    +......-
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e  129 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE  129 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            4455556676666666666666543333221111111 234333344567777888888877776421    11111110


Q ss_pred             HhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950          274 INHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT  352 (458)
Q Consensus       274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  352 (458)
                       -.-++|.|+.-+-++ ...+|..+-.++..+.. ..+.        .+++.++.-+.+.+..+|.+++..+..+.....
T Consensus       130 -a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          130 -VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             -HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence             123688999999777 78899888877776654 2222        267778888889999999999999999975322


Q ss_pred             HHHHHHHHHCCCh---HHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950          353 HEQIKYLVREGCI---KPLCDLLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       353 ~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      ..      ....+   +.+..++.++|..|+..|+.++..++....
T Consensus       200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence            11      23468   999999999999999999999998876543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.41  E-value=0.014  Score=50.78  Aligned_cols=208  Identities=13%  Similarity=0.085  Sum_probs=149.5

Q ss_pred             HHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh----hhHHHHHh-cCChHHHHHHhccCChhhHHHHHHHHHH
Q 043950          229 QVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD----FQTQCIIN-HGAVPCLLALLIHNHKKSIKKVACWTIS  303 (458)
Q Consensus       229 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~-~~~~~~l~~ll~~~~~~~v~~~a~~~l~  303 (458)
                      +.+...+.+..|+..|..=+.+.|..+..+++++.+...    .....+.. ..++..|+....   ++++--.+...|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence            446677899999999998888899999999999987543    23344442 223333333333   4455556666666


Q ss_pred             HhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH--CCChHHHHhhccCCCHHHHH
Q 043950          304 NITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR--EGCIKPLCDLLLCVDPKIVT  381 (458)
Q Consensus       304 nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~~~l~~L~~ll~~~~~~v~~  381 (458)
                      .++.+ +.....+...+.+..+.+.++.++.++...|...+..+......-..+++..  ..+...+..++.+++.-++.
T Consensus       149 ecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          149 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            66654 4666778888888899999999999999999999999977643333333332  13466777788999988999


Q ss_pred             HHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCC
Q 043950          382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRV  450 (458)
Q Consensus       382 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  450 (458)
                      .++++|+.++-.-.+..          -....+.+..-++.+..|+.+++..++-.|-.+..-|.....
T Consensus       228 QSlKLLgelLldr~N~~----------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~  286 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  286 (341)
T ss_dssp             HHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHhCchHHH----------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence            99999999997655432          124555566678899999999999999888888766655443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.38  E-value=0.011  Score=48.96  Aligned_cols=187  Identities=11%  Similarity=0.096  Sum_probs=124.7

Q ss_pred             ChHHHHHHHHHHHHhccCChhhHHHHHHh-CcHHHHHHH-------hCCCCc----cchh-hHHHHHhHhhcCChhhHHH
Q 043950          206 DEEVLSDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVEL-------LGHPSP----SVLT-PALWTVGNIVMGDDFQTQC  272 (458)
Q Consensus       206 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~l-------l~~~~~----~~~~-~a~~~l~~l~~~~~~~~~~  272 (458)
                      +++.++.|+..|+.--+..++....+..+ |.+..|++=       +..+.-    +-|. +|+..+..++ .+++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhH
Confidence            44457777766666444444444434433 555554322       222211    1122 2333344445 47788888


Q ss_pred             HHhcCChHHHHHHhccCC----hhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950          273 IINHGAVPCLLALLIHNH----KKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA  347 (458)
Q Consensus       273 ~~~~~~~~~l~~ll~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l  347 (458)
                      ++++++.-.+..+|+...    -..+|-.+..+++.+.. ++++.+..+.+.+++|...+.+..++.-.|.-|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            889988878888886542    24788899999999997 7889999999999999999999999999999999999998


Q ss_pred             hcCCCHHHHHHHHHC--------CChHHHHh-hccCCCHHHHHHHHHHHHHHHHhch
Q 043950          348 TVRGTHEQIKYLVRE--------GCIKPLCD-LLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       348 ~~~~~~~~~~~l~~~--------~~l~~L~~-ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      ...  .....++...        .++..++. +.+.+++.+.+.++.+..++.+...
T Consensus       173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r  227 (268)
T 2fv2_A          173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR  227 (268)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred             hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence            863  3444443221        13333333 4457888999999999888876544

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.35  E-value=0.14  Score=53.05  Aligned_cols=297  Identities=13%  Similarity=0.126  Sum_probs=158.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCC-hhhHHHHHh--CC
Q 043950           34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRF-VEFLMREDYPQLQYEAAWALTNIASGT-SMNTNVVID--HG  109 (458)
Q Consensus        34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~--~~  109 (458)
                      +.++++...++.++..+++=   -....+++.++++.+ ..++.  + ++++..|+.||..+.... +++.+.+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            45677878888888888663   245677888888888 46663  3 789999999999987642 222222211  12


Q ss_pred             ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhcCC-------CchhhHHhhhCCHHHHHHHhcccccHHHH
Q 043950          110 AVPIFVKLL-------------ASPSDDVREQAVWALGNVAADS-------PGCRNLVLREEALIPLLAQLNEHAKLSML  169 (458)
Q Consensus       110 ~i~~L~~ll-------------~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~  169 (458)
                      .+..+..++             ...+++.....+..+..+....       |..+..+..  ++..++... ..++.++.
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~  368 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF  368 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence            222222222             1122344444555555544221       111111111  233344333 45677887


Q ss_pred             HHHHHHHHHhhc----CCC-----C----------C--ChhhhhhhHHHHHH----hhcCC-------------------
Q 043950          170 RIATWTLSKLCK----GKP-----Q----------P--PFDQVRPALPALAQ----LIHLD-------------------  205 (458)
Q Consensus       170 ~~a~~~l~~l~~----~~~-----~----------~--~~~~~~~~l~~l~~----ll~~~-------------------  205 (458)
                      +.+...-..|..    ..+     .          .  ......+++..+..    -+..+                   
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~  448 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK  448 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence            777655444432    111     0          0  11112333333333    32211                   


Q ss_pred             Ch------HHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhh-HHHHHhc
Q 043950          206 DE------EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQ-TQCIINH  276 (458)
Q Consensus       206 ~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~  276 (458)
                      |.      +....++..+.++-  ..+...     -+.+.+.+.+..  .++...+.++|+++.++..-.+. -+.++ .
T Consensus       449 d~~~~~ly~~mrd~L~~lt~l~--~~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p  520 (1073)
T 3gjx_A          449 DTDSINLYKNMRETLVYLTHLD--YVDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-V  520 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHC--HHHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-H
T ss_pred             hcchHHHHHHHHHHHHHHhcCC--HHHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-H
Confidence            11      11222222222221  111111     134455555544  35778899999999997543322 22222 3


Q ss_pred             CChHHHHHHhccCC--h--hhHHHHHHHHHHHhhc---CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          277 GAVPCLLALLIHNH--K--KSIKKVACWTISNITA---GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       277 ~~~~~l~~ll~~~~--~--~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                      .+++.|+.+...+.  +  ..++...+|+++....   .+++....     ++..+++.+...++.++..|+.++..++.
T Consensus       521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~  595 (1073)
T 3gjx_A          521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQ  595 (1073)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            46777777765441  2  2355566789988764   33443332     55677788888899999999999999987


Q ss_pred             CCC
Q 043950          350 RGT  352 (458)
Q Consensus       350 ~~~  352 (458)
                      .+.
T Consensus       596 ~C~  598 (1073)
T 3gjx_A          596 KCR  598 (1073)
T ss_dssp             HTG
T ss_pred             HHH
Confidence            654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.34  E-value=0.0015  Score=60.55  Aligned_cols=244  Identities=13%  Similarity=0.072  Sum_probs=157.1

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhh--C--------CCCHHHHHHHHHHHH
Q 043950           67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDH--GAVPIFVKLL--A--------SPSDDVREQAVWALG  134 (458)
Q Consensus        67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll--~--------~~~~~~~~~a~~~L~  134 (458)
                      +...|+.-|-++.| ++|.-|+.+|..+..............  ...-.++.++  .        ..-..||+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~W-EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEW-YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcch-hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            55677777788886 999999999998865221100000111  1122222222  1        123689999999999


Q ss_pred             HhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHH
Q 043950          135 NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDAC  214 (458)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~  214 (458)
                      .+ ..-+..      ..++..++..+ ..+.-+++..++-.+.++..--.     ...++++.++..|.+.|.+++..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence            98 544432      23455555444 56678898889999999821111     1688899999999999999999999


Q ss_pred             HHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC--ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChh
Q 043950          215 WTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKK  292 (458)
Q Consensus       215 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  292 (458)
                      .+|.-++ . ++...     .++..+...|.+-+  ..-....+..|+.|+......   ..+...+|.|..++.++ -.
T Consensus       321 etLiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence            9999998 2 22222     24566666666532  122334456677776654311   12347899999999999 99


Q ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950          293 SIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIA  345 (458)
Q Consensus       293 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~  345 (458)
                      .||..+..++..+.  .......        .+..++-.++.+++..+..++.
T Consensus       390 SVR~AVL~TL~tfL--~~~~LRL--------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EESIDFL--------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999998887  2222221        2233456678888888877774

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.33  E-value=0.016  Score=50.34  Aligned_cols=200  Identities=13%  Similarity=0.085  Sum_probs=139.8

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch----hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC----RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      +...+.+..|+..+..-+-+.|..+..++.++.+.....    .+.+..  -...+..++..-.++++.-.+-..|+...
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLReci  151 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence            445578899999998888899999999999998765432    222222  12222222222234555566666676666


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHh---CcHHHHHHHhCCCCccchhhHHH
Q 043950          181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEA---GVCRRLVELLGHPSPSVLTPALW  257 (458)
Q Consensus       181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~~~~~a~~  257 (458)
                      ++..-.......+.+-.+...+..++=++...|..++..+..........++..   .++...-+++.+++.-.++.++.
T Consensus       152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK  231 (341)
T 1upk_A          152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  231 (341)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            653322223334566677788888899999999999988876555444444443   46777889999999999999999


Q ss_pred             HHhHhhcCC--hhh-HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          258 TVGNIVMGD--DFQ-TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       258 ~l~~l~~~~--~~~-~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      .|+.+....  ... .+.+-+..-+..++.+|++. +..++.+|..++--++.
T Consensus       232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            999997642  222 23333556799999999999 99999999999988876

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.33  E-value=0.068  Score=55.36  Aligned_cols=308  Identities=12%  Similarity=0.111  Sum_probs=163.9

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHh
Q 043950           71 FVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIF-VKLLASPSDDVREQAVWALGNVAADS-PGCRNLVL  148 (458)
Q Consensus        71 L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~  148 (458)
                      +..++..+..+++...++.+++.+..  .-....+++.+.++.+ ..++  .+++++..|+.+|..+.... +...+.+.
T Consensus       211 l~~iL~~~~~~~lv~~~L~~L~~~~s--WI~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~  286 (1073)
T 3gjx_A          211 CQFVMENSQNAPLVHATLETLLRFLN--WIPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFE  286 (1073)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHTT--TSCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHH
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHHHH--hcCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHH
Confidence            33444444447888889999999887  3335567788888887 4676  57889999999999988643 22222221


Q ss_pred             hhCCHHHHHH----Hh------------cccccHHHHHHHHHHHHHhhcCCC-----C-CChhhhhhhHHHHHHhhcCCC
Q 043950          149 REEALIPLLA----QL------------NEHAKLSMLRIATWTLSKLCKGKP-----Q-PPFDQVRPALPALAQLIHLDD  206 (458)
Q Consensus       149 ~~~~l~~l~~----~l------------~~~~~~~~~~~a~~~l~~l~~~~~-----~-~~~~~~~~~l~~l~~ll~~~~  206 (458)
                      .  ....++.    .+            ....+++.....+.++..+.+...     . ........++..++.+...+|
T Consensus       287 ~--lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d  364 (1073)
T 3gjx_A          287 T--LFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEE  364 (1073)
T ss_dssp             H--HHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSC
T ss_pred             H--HHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCc
Confidence            1  1111111    11            122344566666666665443320     0 011222334444566666778


Q ss_pred             hHHHHHHHHHHHHhcc----CC------------------hhhH---HHHHHhCcHHHHHHHhCCCCc----------cc
Q 043950          207 EEVLSDACWTLSYLSY----GT------------------NDKI---QVVIEAGVCRRLVELLGHPSP----------SV  251 (458)
Q Consensus       207 ~~~~~~~~~~l~~l~~----~~------------------~~~~---~~~~~~~~i~~L~~ll~~~~~----------~~  251 (458)
                      .++...++..=..+..    ..                  +.+.   ..+. ..+...++.-+..+++          .+
T Consensus       365 ~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~-~~L~~vlI~~m~~P~ev~i~e~e~ge~~  443 (1073)
T 3gjx_A          365 TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVL-SKVRLLMVSRMAKPEEVLVVENDQGEVV  443 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHH-HHHHHHHHHTCCCSCCEEEEECSSSCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHH-HHHHHHHHHhcCCCccccccCcccchHH
Confidence            7777665543222221    00                  0111   1111 1233444444554331          11


Q ss_pred             hh------------hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcC-CHH-HHHHH
Q 043950          252 LT------------PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAG-NRE-QIQAV  316 (458)
Q Consensus       252 ~~------------~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~-~~~-~~~~l  316 (458)
                      |+            ..-.++..++.-.......+    ..+.+.+.+..+ .++.....++|+++.++.. .++ ....+
T Consensus       444 re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L  519 (1073)
T 3gjx_A          444 REFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL  519 (1073)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH
Confidence            11            01112223322122221111    234444444432 2578899999999999863 322 22223


Q ss_pred             HHcCChHHHHHHhccC---Chh--hHHHHHHHHHHhhcC--CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHH
Q 043950          317 IDAGLIVPLVNVLQDA---EFD--IKKEAALAIANATVR--GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLEN  389 (458)
Q Consensus       317 ~~~~~~~~L~~ll~~~---~~~--~~~~a~~~L~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~  389 (458)
                      .+  +++.|+.+....   +.+  ++...+++++.....  ..+++.+.     ++..|++.+...++.|+..|+.++..
T Consensus       520 p~--vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~  592 (1073)
T 3gjx_A          520 VT--VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIK  592 (1073)
T ss_dssp             HH--HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred             HH--HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            33  666777766543   223  444455777776543  12333333     57778888888899999999999999


Q ss_pred             HHHhchh
Q 043950          390 ILKVGEA  396 (458)
Q Consensus       390 l~~~~~~  396 (458)
                      ++.....
T Consensus       593 i~~~C~~  599 (1073)
T 3gjx_A          593 IAQKCRR  599 (1073)
T ss_dssp             HHHHTGG
T ss_pred             HHHHHHH
Confidence            9876554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.31  E-value=0.0059  Score=51.87  Aligned_cols=178  Identities=11%  Similarity=0.020  Sum_probs=119.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHhh----cCCC
Q 043950          112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKLC----KGKP  184 (458)
Q Consensus       112 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l~----~~~~  184 (458)
                      +-+...+.+.+..-+..++..|.......+.  ..+.   .++.+++.+.   .+++..+...++.++..+.    ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445555556666666677776665443221  1111   2333333221   3567778788877777653    3222


Q ss_pred             CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950          185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM  264 (458)
Q Consensus       185 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~  264 (458)
                      .........++|.++.-+.++...++..+-.++..+....+       ...+++.+..-+++.++..|..++..++.+..
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            33333447789999999999999999888887766653111       12367788888899999999999999988865


Q ss_pred             CChhhHHHHHhcCCh---HHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950          265 GDDFQTQCIINHGAV---PCLLALLIHNHKKSIKKVACWTISNITA  307 (458)
Q Consensus       265 ~~~~~~~~~~~~~~~---~~l~~ll~~~~~~~v~~~a~~~l~nl~~  307 (458)
                      .+...     ....+   +.+..++.+. |..||..|..++..+-.
T Consensus       197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            33222     23467   9999999998 99999999999987764

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.18  E-value=0.05  Score=47.24  Aligned_cols=295  Identities=14%  Similarity=0.111  Sum_probs=171.2

Q ss_pred             HHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHH
Q 043950          133 LGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLS  211 (458)
Q Consensus       133 L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~  211 (458)
                      |.++..++....+-++..+++..+.... +-++.++.+..+..|...+... .....-....+|.++..+. +++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence            4455555556666677888888888888 5666788888998888877553 2333344778888887776 78899999


Q ss_pred             HHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-------CccchhhHHHHHhHhhcC-------------------
Q 043950          212 DACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-------SPSVLTPALWTVGNIVMG-------------------  265 (458)
Q Consensus       212 ~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~~~~~a~~~l~~l~~~-------------------  265 (458)
                      .....++|+..+.....+..+..|.+..|.+.+...       +..-+..||.+++|-.+.                   
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            999999999988888888888889999988876431       222344455555543311                   


Q ss_pred             C---hhhHHHHHhcCChHHHHHHhccCC-----hhhHHHHHHHHHHHhhcCC---HHHH----HHHHHcCChHHHHHHhc
Q 043950          266 D---DFQTQCIINHGAVPCLLALLIHNH-----KKSIKKVACWTISNITAGN---REQI----QAVIDAGLIVPLVNVLQ  330 (458)
Q Consensus       266 ~---~~~~~~~~~~~~~~~l~~ll~~~~-----~~~v~~~a~~~l~nl~~~~---~~~~----~~l~~~~~~~~L~~ll~  330 (458)
                      .   .++...+++..+++.++.+|+-+.     --+.|......+.-+.+..   .+..    +.+-+.+.+..++-.+.
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s  503 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS  503 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence            1   223344556678888888887541     1244554444443333311   0000    00112233444443332


Q ss_pred             c-----CC-------hhhHHHHHHHHHHhhcCC-CHHH-HHHHHHCCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhc
Q 043950          331 D-----AE-------FDIKKEAALAIANATVRG-THEQ-IKYLVREGCIKPLCDLLLCV--DPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       331 ~-----~~-------~~~~~~a~~~L~~l~~~~-~~~~-~~~l~~~~~l~~L~~ll~~~--~~~v~~~~~~~l~~l~~~~  394 (458)
                      .     .+       ..+.+.+...|..+.+.+ ++.+ ...+..   ++.=.+++++.  .|.....++.+=.++++..
T Consensus       504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~Ys---IsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHc  580 (619)
T 3c2g_A          504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYS---IDCPLNLLNGNQVKPTFIHNVLVVCDKILEHC  580 (619)
T ss_dssp             HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTTT---SCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhheee---ccCchhhhcccccChHHHHHHHHHHHHHHHhC
Confidence            1     11       123344555555555443 2222 111111   22223445432  4556566666666666544


Q ss_pred             hhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          395 EAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      +-..             ..-  .-.-..+.-+.+|.|+++.+.|..++.+|-+
T Consensus       581 P~~A-------------d~W--~i~r~tle~l~NHsNsDIa~aasSLL~rfP~  618 (619)
T 3c2g_A          581 PTRA-------------DIW--TIDRPMLEGLTNHRNSDIAKAANSLLSRFPE  618 (619)
T ss_dssp             TTHH-------------HHS--CCCHHHHHHHHTCSSHHHHHHHHHHHTTSCC
T ss_pred             cchh-------------ccc--eechHHHHHHhcCCCchHHHHHHHHHHhCCC
Confidence            3321             110  0113456677899999999999999987743

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.93  E-value=0.051  Score=45.11  Aligned_cols=189  Identities=14%  Similarity=0.049  Sum_probs=120.4

Q ss_pred             ccchhhHHHHHhHhhcCChhhHHHHHh-cCChHHHHHHh-------ccCC---hhhHH-HHHHHHHHHhhcCCHHHHHHH
Q 043950          249 PSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALL-------IHNH---KKSIK-KVACWTISNITAGNREQIQAV  316 (458)
Q Consensus       249 ~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll-------~~~~---~~~v~-~~a~~~l~nl~~~~~~~~~~l  316 (458)
                      ++.|+.|+.-|+.=-...++..-.++. .|.+..+++=+       ..+.   ...-| -.|...+..++++ ++.+..+
T Consensus        15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~F   93 (268)
T 2fv2_A           15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSAF   93 (268)
T ss_dssp             TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHHH
T ss_pred             chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhHH
Confidence            345777776666544333444344443 34444443222       1110   11112 2344444555554 5778888


Q ss_pred             HHcCChHHHHHHhccC-----ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950          317 IDAGLIVPLVNVLQDA-----EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL  391 (458)
Q Consensus       317 ~~~~~~~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~  391 (458)
                      ++..+--.|..+++..     .+.+|-.++.+++.+++.++++...++.+.+.++...+.++..++-.+..|..++.+|+
T Consensus        94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL  173 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL  173 (268)
T ss_dssp             HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence            8888777777777644     35789999999999999999999999999999999999999999988889999999999


Q ss_pred             HhchhhcccCCCCCchhHHHHHHHh-cchH-HHHHhhhcCCChHHHHHHHHHHHHh
Q 043950          392 KVGEAEKNTGSTIGDVNQYARLVEE-DEGF-KKIEGLKSHDNNGIREKAVKILETY  445 (458)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~l~~l~~~~~~~v~~~a~~~l~~~  445 (458)
                      ..+......+..       .+.|.. ...+ +.+..+..++++++-+...+...+.
T Consensus       174 ~dd~GL~YiC~t-------~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRL  222 (268)
T 2fv2_A          174 LDDTGLAYICQT-------YERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL  222 (268)
T ss_dssp             HSHHHHHHHTSS-------HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHcc-------HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            888776655432       111111 1112 2333556777777655544443333

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.76  E-value=0.025  Score=47.46  Aligned_cols=166  Identities=13%  Similarity=0.115  Sum_probs=113.5

Q ss_pred             hhhHHHHHhcCChHHHHHHhccC----------ChhhHHHHHHHHHHHhhcCCHHHHHHHHH-cCChHHHHHHhccCChh
Q 043950          267 DFQTQCIINHGAVPCLLALLIHN----------HKKSIKKVACWTISNITAGNREQIQAVID-AGLIVPLVNVLQDAEFD  335 (458)
Q Consensus       267 ~~~~~~~~~~~~~~~l~~ll~~~----------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~  335 (458)
                      ....+.+ ..+++..|+..|..-          .+......+..+|..+.. +...+..++. .+.+..+...+.++++.
T Consensus        34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~  111 (233)
T 2f31_A           34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPN  111 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence            3444555 345666666655421          144566778888888764 4455666664 55788888888888999


Q ss_pred             hHHHHHHHHHHhhcCCC----HH-HHHH------HHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCC
Q 043950          336 IKKEAALAIANATVRGT----HE-QIKY------LVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGST  403 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~----~~-~~~~------l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~  403 (458)
                      ++..++..|..++...+    .. ....      ..+..-+..+++.++ +.+.+.+..++..+..++...++.+     
T Consensus       112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~-----  186 (233)
T 2f31_A          112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-----  186 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-----
T ss_pred             HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH-----
Confidence            99999988887776542    21 1111      123345667777776 4566888889988888887765543     


Q ss_pred             CCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHH
Q 043950          404 IGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI  441 (458)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~  441 (458)
                        ....++..|...|..+.+..+...+++++..+....
T Consensus       187 --~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~~f  222 (233)
T 2f31_A          187 --FRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF  222 (233)
T ss_dssp             --HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHHHH
Confidence              345678888899999999999888888887665443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.74  E-value=0.00032  Score=59.23  Aligned_cols=185  Identities=15%  Similarity=0.108  Sum_probs=123.8

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCC
Q 043950           73 EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEA  152 (458)
Q Consensus        73 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  152 (458)
                      .++.+++ +.+|..++..+                  ....+..+++++++.||..++..|.      +           
T Consensus        57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------~-----------  100 (244)
T 1lrv_A           57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------R-----------  100 (244)
T ss_dssp             GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------S-----------
T ss_pred             HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------H-----------
Confidence            4556777 89999888742                  1345777888899999998885421      0           


Q ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950          153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI  232 (458)
Q Consensus       153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  232 (458)
                       +.+..++ .++++.++..+...   +.              .+.+..+++++++.++..+...   +.           
T Consensus       101 -~~L~~ll-~D~d~~VR~~aA~~---l~--------------~~~L~~L~~D~d~~VR~~aA~~---l~-----------  147 (244)
T 1lrv_A          101 -EQLSALM-FDEDREVRITVADR---LP--------------LEQLEQMAADRDYLVRAYVVQR---IP-----------  147 (244)
T ss_dssp             -GGGGGTT-TCSCHHHHHHHHHH---SC--------------TGGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred             -HHHHHHH-cCCCHHHHHHHHHh---CC--------------HHHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence             1233333 78888888887763   21              0134566788889999888763   11           


Q ss_pred             HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH
Q 043950          233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ  312 (458)
Q Consensus       233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~  312 (458)
                          .+.+..+++++++.||..++..+.                  -+.+..++.++ ++.||..++..+          
T Consensus       148 ----~~~l~~l~~D~d~~VR~~aa~~l~------------------~~ll~~ll~D~-d~~VR~aaa~~l----------  194 (244)
T 1lrv_A          148 ----PGRLFRFMRDEDRQVRKLVAKRLP------------------EESLGLMTQDP-EPEVRRIVASRL----------  194 (244)
T ss_dssp             ----GGGGGGTTTCSCHHHHHHHHHHSC------------------GGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence                123446677888889988877511                  12344566777 889999888652          


Q ss_pred             HHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHH
Q 043950          313 IQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGL  387 (458)
Q Consensus       313 ~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l  387 (458)
                              ..+.|..++.+++..|+..++..+.                   .+.|..+ +++++.|+..+...|
T Consensus       195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                    1356777788899999998888753                   2345556 888888888776543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.74  E-value=0.00055  Score=57.83  Aligned_cols=64  Identities=13%  Similarity=0.020  Sum_probs=36.9

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 043950           30 AGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG  109 (458)
Q Consensus        30 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~  109 (458)
                      +++.++++.++..++..+.                   ...|..++++++ +.+|..++..+   .              
T Consensus        57 ~ll~d~~~~VR~~AA~~l~-------------------~~~l~~L~~D~~-~~VR~~aA~~L---~--------------   99 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYSP-------------------VEALTPLIRDSD-EVVRRAVAYRL---P--------------   99 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTSC-------------------GGGGGGGTTCSS-HHHHHHHHTTS---C--------------
T ss_pred             HHhcCCCHHHHHHHHHhCC-------------------HHHHHHHccCcC-HHHHHHHHHHC---C--------------
Confidence            4457788888888876431                   122455556666 66666666431   0              


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHH
Q 043950          110 AVPIFVKLLASPSDDVREQAVW  131 (458)
Q Consensus       110 ~i~~L~~ll~~~~~~~~~~a~~  131 (458)
                       .+.|..++++++..+|..++.
T Consensus       100 -~~~L~~ll~D~d~~VR~~aA~  120 (244)
T 1lrv_A          100 -REQLSALMFDEDREVRITVAD  120 (244)
T ss_dssp             -SGGGGGTTTCSCHHHHHHHHH
T ss_pred             -HHHHHHHHcCCCHHHHHHHHH
Confidence             134555555666666655554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.65  E-value=0.19  Score=46.07  Aligned_cols=249  Identities=13%  Similarity=0.049  Sum_probs=145.7

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHH
Q 043950          120 SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALA  199 (458)
Q Consensus       120 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~  199 (458)
                      ++++..++.|...+..+..+-|..++.     ++..++.++ .+.|..++..|+..|..+|.+      .....+...|.
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence            357899999999999998887776554     677899999 888899999999999999976      33688888999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC-ChhhHHHHHhcCC
Q 043950          200 QLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG-DDFQTQCIINHGA  278 (458)
Q Consensus       200 ~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~  278 (458)
                      ++|+++++.-...+-.+|..+...++.        +.+..+...+..+++.+|+.++..|..-... ..+....-.+.-+
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            999999887777777777766644432        2233344444445678888888887443321 1111111222234


Q ss_pred             hHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHh------ccCChhhHHHHHHHHHHhhc--
Q 043950          279 VPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVL------QDAEFDIKKEAALAIANATV--  349 (458)
Q Consensus       279 ~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll------~~~~~~~~~~a~~~L~~l~~--  349 (458)
                      +..+.+.|++- ...--.....+|..+-. .+....+.+++     .+.+..      ...|.+.....+.++..-.-  
T Consensus       179 ~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv~-----ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F  252 (507)
T 3u0r_A          179 LTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLVE-----LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF  252 (507)
T ss_dssp             HHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHHH-----HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHHH-----HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            55566666443 22222223333433332 34444444332     233321      12355555555555544432  


Q ss_pred             --C-CCHHHHHHHHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhch
Q 043950          350 --R-GTHEQIKYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       350 --~-~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~  395 (458)
                        + .+..+..++.+. +++.+-.+-.. +.++.+...++++..+..+..
T Consensus       253 S~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          253 SKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             BTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             ccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence              1 245666665554 56655444332 111244455666666655444

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.32  E-value=0.26  Score=40.64  Aligned_cols=144  Identities=16%  Similarity=0.023  Sum_probs=104.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhc-CCCchhh
Q 043950           68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAA-DSPGCRN  145 (458)
Q Consensus        68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~  145 (458)
                      ++....+.+++. .++|..|+..|+.. ...+         ..++.+.. +....+-.|++.+..++..++. ..++.  
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            455556667777 69999999999888 3111         23667776 5556888999999999999984 33331  


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN  225 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  225 (458)
                            .++.+.... .+++..+++.++..+.--+.. + ........++|.+-.+..+++.-|+..+.+.|..++..++
T Consensus       140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                  455566566 888999999998887654443 1 2233346678888888889999999999999999998888


Q ss_pred             hhHHHHHH
Q 043950          226 DKIQVVIE  233 (458)
Q Consensus       226 ~~~~~~~~  233 (458)
                      +....+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.20  E-value=0.058  Score=48.96  Aligned_cols=163  Identities=14%  Similarity=0.127  Sum_probs=114.1

Q ss_pred             ChhhHHHHHhcCChHHHHHHhcc----------CChhhHHHHHHHHHHHhhcCCHHHHHHHHH-cCChHHHHHHhccCCh
Q 043950          266 DDFQTQCIINHGAVPCLLALLIH----------NHKKSIKKVACWTISNITAGNREQIQAVID-AGLIVPLVNVLQDAEF  334 (458)
Q Consensus       266 ~~~~~~~~~~~~~~~~l~~ll~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~  334 (458)
                      .....+.+. .+++..|+.+|..          ..+......+..+|..+.. +...+..++. ...+..+...+.+..+
T Consensus        99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~  176 (383)
T 3eg5_B           99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVP  176 (383)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred             ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCch
Confidence            345556565 5667777777742          1134667778888888864 3455666664 5678899999999999


Q ss_pred             hhHHHHHHHHHHhhcCCC----HH-HHHH------HHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhchhhcccCC
Q 043950          335 DIKKEAALAIANATVRGT----HE-QIKY------LVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKVGEAEKNTGS  402 (458)
Q Consensus       335 ~~~~~a~~~L~~l~~~~~----~~-~~~~------l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~  402 (458)
                      .++..++..|..++....    .. ....      ..+..-+..+++.++. .+.+....++..+..++...+...    
T Consensus       177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~----  252 (383)
T 3eg5_B          177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD----  252 (383)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH----
T ss_pred             HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH----
Confidence            999999999988887543    11 1111      1234557788888876 577888888988888887665543    


Q ss_pred             CCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHH
Q 043950          403 TIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREK  437 (458)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~  437 (458)
                         ....++..|...|..+.+..+...+++++..+
T Consensus       253 ---~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          253 ---FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             ---HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             ---HHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence               34556788889999999999887778776544

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.20  E-value=0.099  Score=43.07  Aligned_cols=144  Identities=9%  Similarity=-0.013  Sum_probs=101.7

Q ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH-hhcCCChHHHHHHHHHHHHhcc-CChhhHHHH
Q 043950          154 IPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQ-LIHLDDEEVLSDACWTLSYLSY-GTNDKIQVV  231 (458)
Q Consensus       154 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~  231 (458)
                      ..+...|.+++..+++..|+..+..+ .        .....++.+.. +.......|++.+..++..++. ..++     
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-----  138 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-----  138 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence            35555555677778898999988877 2        12567888877 6667889999999999998874 3332     


Q ss_pred             HHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH
Q 043950          232 IEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE  311 (458)
Q Consensus       232 ~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~  311 (458)
                         ..++.+.....+++..+|+.|...+.-.+........   ...+++.+-.+..++ +.-||+..+|.|..++..+|+
T Consensus       139 ---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d---p~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          139 ---KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN---PNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             ---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC---HHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred             ---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC---HHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHH
Confidence               2567888999999999999998887544432110000   012355555555555 889999999999999999988


Q ss_pred             HHHHHHH
Q 043950          312 QIQAVID  318 (458)
Q Consensus       312 ~~~~l~~  318 (458)
                      -...+++
T Consensus       212 ~V~~~~~  218 (240)
T 3l9t_A          212 LVKIELK  218 (240)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.97  E-value=2.1  Score=45.49  Aligned_cols=300  Identities=10%  Similarity=0.016  Sum_probs=168.1

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCC----
Q 043950           25 LPAMVAGVWSD--DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLM-REDYPQLQYEAAWALTNIASG----   97 (458)
Q Consensus        25 i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~i~~~a~~~L~~l~~~----   97 (458)
                      +..+++.+.++  +...+..|-..|.++-...           .....+...|. .+.++.+|..|+..|.+....    
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            44445444443  6778888888888774331           13344444333 333379999999999987642    


Q ss_pred             -ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950           98 -TSMNTNVVIDHGAVPIFVKLLAS---PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT  173 (458)
Q Consensus        98 -~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~  173 (458)
                       +++.+..+. ..+++.+......   ....++...+.++..++...-..  ..  .+.++.++..+..  ++.....++
T Consensus        82 l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~--~W--p~ll~~L~~~~~~--~~~~~e~~L  154 (1204)
T 3a6p_A           82 MSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ--HW--PDMLIELDTLSKQ--GETQTELVM  154 (1204)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT--TC--TTHHHHHHHHHHT--CHHHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc--cc--hHHHHHHHHHhcC--CHHHHHHHH
Confidence             233333332 2334444443211   45889999999999887442110  01  2356777777733  445577788


Q ss_pred             HHHHHhhcCC---CCCChhh-------h----hhhHHHHHHhhcC-------------------CChHHHHHHHHHHHHh
Q 043950          174 WTLSKLCKGK---PQPPFDQ-------V----RPALPALAQLIHL-------------------DDEEVLSDACWTLSYL  220 (458)
Q Consensus       174 ~~l~~l~~~~---~~~~~~~-------~----~~~l~~l~~ll~~-------------------~~~~~~~~~~~~l~~l  220 (458)
                      .+|..++...   .......       .    ..+++.+..++..                   .+..+...++.++.+.
T Consensus       155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~  234 (1204)
T 3a6p_A          155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY  234 (1204)
T ss_dssp             HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence            8888886542   1111110       1    1333334444432                   1234666777777766


Q ss_pred             ccCChhhHHHHHHhC--cHHHHHHHhCCCCccchhhHHHHHhHhhcCC--hhhHHHHHhc---CChHHHHHHhc------
Q 043950          221 SYGTNDKIQVVIEAG--VCRRLVELLGHPSPSVLTPALWTVGNIVMGD--DFQTQCIINH---GAVPCLLALLI------  287 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~---~~~~~l~~ll~------  287 (458)
                      ...-+.  ..+.+..  +++.+..++.  ++.++..|+.+|..++...  +.....++..   ..+..++..+.      
T Consensus       235 l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~  310 (1204)
T 3a6p_A          235 IDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGG  310 (1204)
T ss_dssp             TTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS
T ss_pred             HhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC
Confidence            544331  2233332  7777777665  4678999999999998744  2222222211   11234444432      


Q ss_pred             -cCChhhHHHHHHHHHHHhhcCCHHHHHHHHH-----------cCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950          288 -HNHKKSIKKVACWTISNITAGNREQIQAVID-----------AGLIVPLVNVLQDAEFDIKKEAALAIANATVR  350 (458)
Q Consensus       288 -~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-----------~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~  350 (458)
                       .+.+.++.+..+..+..+..    ....++.           .++++.++.+...++..+-..++..+..+...
T Consensus       311 ~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          311 LVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence             11145666777777777652    2222222           13577777777787888888887777766654

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.97  E-value=0.3  Score=40.88  Aligned_cols=138  Identities=14%  Similarity=0.166  Sum_probs=88.0

Q ss_pred             HHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHHcCCChhhHHHHHh-CCChH
Q 043950           44 TTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR----------EDYPQLQYEAAWALTNIASGTSMNTNVVID-HGAVP  112 (458)
Q Consensus        44 ~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~  112 (458)
                      +..|+-.+...+....+.+ ..+++..|+..|..          ..+.+.+..++.||..+.. +....+.+.. .+.+.
T Consensus        22 L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~   99 (233)
T 2f31_A           22 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGIL   99 (233)
T ss_dssp             HHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHH
T ss_pred             HHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHH
Confidence            3444433343323445555 45677777777742          1125778899999999988 5666666665 46789


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCC-ch-hhHHhh----------hCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950          113 IFVKLLASPSDDVREQAVWALGNVAADSP-GC-RNLVLR----------EEALIPLLAQLNEHAKLSMLRIATWTLSKLC  180 (458)
Q Consensus       113 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~~----------~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~  180 (458)
                      .+...+.++++.++..++..|..+|.... .. ...+.+          ..-+..++..+..+.+.+.+..++..+..+.
T Consensus       100 ~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li  179 (233)
T 2f31_A          100 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI  179 (233)
T ss_dssp             HHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999986553 22 222221          1234455555544455566666666666665


Q ss_pred             cCC
Q 043950          181 KGK  183 (458)
Q Consensus       181 ~~~  183 (458)
                      ...
T Consensus       180 ~~~  182 (233)
T 2f31_A          180 TPA  182 (233)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            554

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.94  E-value=0.7  Score=40.30  Aligned_cols=161  Identities=14%  Similarity=0.155  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC
Q 043950          211 SDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH  290 (458)
Q Consensus       211 ~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~  290 (458)
                      ..+...+ ++.-++.+.+.-++..+++..+...+..++.++.+..+..|...+....-....  -...+|.++..+.-.+
T Consensus       261 tR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          261 IRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCC
T ss_pred             HHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCC
Confidence            3344444 444466667777999999999999999999999999999998886533211111  1246777888777655


Q ss_pred             hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-------ChhhHHHH-------HHHHHHhhc------C
Q 043950          291 KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-------EFDIKKEA-------ALAIANATV------R  350 (458)
Q Consensus       291 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-------~~~~~~~a-------~~~L~~l~~------~  350 (458)
                      +.++.......++|...+.....+.-+.+|.++.|...+...       +..-++.|       ++++.|+.-      +
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N  417 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN  417 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence            889999999999999999877777777899999999887532       22233444       444444431      1


Q ss_pred             C--------CHHHHHHHHHCCChHHHHhhccC
Q 043950          351 G--------THEQIKYLVREGCIKPLCDLLLC  374 (458)
Q Consensus       351 ~--------~~~~~~~l~~~~~l~~L~~ll~~  374 (458)
                      +        ++.+.-.+++.++++.|..+++-
T Consensus       418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~  449 (619)
T 3c2g_A          418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSC  449 (619)
T ss_dssp             SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHC
T ss_pred             CccccCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1        12333444566777788887763

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.62  E-value=0.72  Score=41.86  Aligned_cols=162  Identities=14%  Similarity=0.128  Sum_probs=110.3

Q ss_pred             hhHHHHHhcCChHHHHHHhcc----------CChhhHHHHHHHHHHHhhcCCHHHHHHHHH-cCChHHHHHHhccCChhh
Q 043950          268 FQTQCIINHGAVPCLLALLIH----------NHKKSIKKVACWTISNITAGNREQIQAVID-AGLIVPLVNVLQDAEFDI  336 (458)
Q Consensus       268 ~~~~~~~~~~~~~~l~~ll~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~  336 (458)
                      .+.+.+. .+++..|+..|..          ..+......+..+|..+.. +...+..++. .+.+..+...+.+.++.+
T Consensus        39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~  116 (386)
T 2bnx_A           39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM  116 (386)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            4444443 3555555555532          1144667778888888764 4455666654 567888888898889999


Q ss_pred             HHHHHHHHHHhhcCCC----HH-HHH------HHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCC
Q 043950          337 KKEAALAIANATVRGT----HE-QIK------YLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTI  404 (458)
Q Consensus       337 ~~~a~~~L~~l~~~~~----~~-~~~------~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~  404 (458)
                      +..++..|..++....    .. ...      ...+..-+..+++.+. +.+.+....++..+..++...+...      
T Consensus       117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~------  190 (386)
T 2bnx_A          117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------  190 (386)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH------
T ss_pred             HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH------
Confidence            9999888887776543    11 111      1123345667777776 5567888889988988888766543      


Q ss_pred             CchhHHHHHHHhcchHHHHHhhhcCCChHHHHHH
Q 043950          405 GDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKA  438 (458)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a  438 (458)
                       ....++..|...|..+.+..+....++++....
T Consensus       191 -~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi  223 (386)
T 2bnx_A          191 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQL  223 (386)
T ss_dssp             -HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             -HHHHHHHHHHHCChHHHHHHHhccCChhHHHHH
Confidence             355678889999999999999888888876553

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.42  E-value=1.6  Score=40.13  Aligned_cols=178  Identities=16%  Similarity=0.046  Sum_probs=121.6

Q ss_pred             HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950           20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ++...+..++...+. +.....-|+..+.++...- ++...     ..+..++.++.+++ ..+|.+|++.|-.+|.+  
T Consensus        26 ~~~~~y~~Il~~~kg-~~k~K~LaaQ~I~kffk~F-P~l~~-----~Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~--   95 (507)
T 3u0r_A           26 QHKDAYQVILDGVKG-GTKEKRLAAQFIPKFFKHF-PELAD-----SAINAQLDLCEDED-VSIRRQAIKELPQFATG--   95 (507)
T ss_dssp             GGHHHHHHHHHGGGS-CHHHHHHHHHHHHHHGGGC-GGGHH-----HHHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT--
T ss_pred             ccHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhC-hhhHH-----HHHHHHHHHHhccc-HHHHHHHHHhhHHHhhh--
Confidence            344456666766555 5888888999999987664 34333     35889999999999 89999999999999996  


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950          100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l  179 (458)
                      +....+     ..+|.++|++.++.-...+-.+|..+...++.        +.+..++..+.. +++.++..++..|..-
T Consensus        96 ~~i~ki-----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~-~~e~~Rer~lkFi~~k  161 (507)
T 3u0r_A           96 ENLPRV-----ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQ-GEDIVRERAIKFLSTK  161 (507)
T ss_dssp             TCHHHH-----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred             hhhhhH-----HHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcc-cchHHHHHHHHHHHHH
Confidence            554444     68999999998888777788888777544432        356677777744 5678888888887654


Q ss_pred             hcCC--CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950          180 CKGK--PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS  221 (458)
Q Consensus       180 ~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~  221 (458)
                      ...-  ..........++..+.+.+++-...--...+.+|..+-
T Consensus       162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lk  205 (507)
T 3u0r_A          162 LKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLK  205 (507)
T ss_dssp             GGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSG
T ss_pred             HhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcc
Confidence            3322  22233444556666777775544444444555554443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.37  E-value=0.86  Score=41.27  Aligned_cols=157  Identities=13%  Similarity=0.139  Sum_probs=100.9

Q ss_pred             HHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHH
Q 043950           26 PAMVAGVWSDD-NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR----------EDYPQLQYEAAWALTNI   94 (458)
Q Consensus        26 ~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~~i~~~a~~~L~~l   94 (458)
                      ...++.|+++. ..-....+..|+.-+...+....+.+. .+++..|+.+|..          ..+...+..+++||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            34555566543 222223445555444443334456665 5678888888741          11257889999999999


Q ss_pred             cCCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-ch-hhHHhh----------hCCHHHHHHHhc
Q 043950           95 ASGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSP-GC-RNLVLR----------EEALIPLLAQLN  161 (458)
Q Consensus        95 ~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~~----------~~~l~~l~~~l~  161 (458)
                      .. +......++. ...+..|...+.+.++.++..++..|+.+|.... .. ...+.+          ..-+..++..+.
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            88 5666666665 4678999999999999999999999999996653 21 222222          233566666664


Q ss_pred             ccccHHHHHHHHHHHHHhhcCCC
Q 043950          162 EHAKLSMLRIATWTLSKLCKGKP  184 (458)
Q Consensus       162 ~~~~~~~~~~a~~~l~~l~~~~~  184 (458)
                      ...+.+.+..+...+..+....+
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCC
Confidence            44566676666666666666543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.35  E-value=0.82  Score=48.58  Aligned_cols=283  Identities=11%  Similarity=0.021  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCC-----CchhhHHhhhCCH
Q 043950           81 PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAADS-----PGCRNLVLREEAL  153 (458)
Q Consensus        81 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l  153 (458)
                      ++.|.+|-..|.++-.. +         .....+...|  .+.+..+|..|+.+|.+.....     ++.+..+     =
T Consensus        27 ~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-----r   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-----K   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-----H
T ss_pred             hHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-----H
Confidence            67888888888776542 2         1234444433  3467899999999999886432     1222222     2


Q ss_pred             HHHHHHhccc------ccHHHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC---
Q 043950          154 IPLLAQLNEH------AKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG---  223 (458)
Q Consensus       154 ~~l~~~l~~~------~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~---  223 (458)
                      ..++..+...      ..+.++...+.++..+.... |    ..-..+++.++.++.+ ++...+.++.+|..+++.   
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence            2344444322      35678888888888887664 3    1236778888888876 455577788888777632   


Q ss_pred             ----ChhhHHH----HHHh--CcHHHHHHHhCC-------------------CCccchhhHHHHHhHhhcCChhhHHHHH
Q 043950          224 ----TNDKIQV----VIEA--GVCRRLVELLGH-------------------PSPSVLTPALWTVGNIVMGDDFQTQCII  274 (458)
Q Consensus       224 ----~~~~~~~----~~~~--~~i~~L~~ll~~-------------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~  274 (458)
                          ...+...    +.+.  .++..+..++..                   ++..+...++.++.+...--+  ...+.
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHH
Confidence                1111111    1111  233333444422                   122355566777765544222  12233


Q ss_pred             hcC--ChHHHHHHhccCChhhHHHHHHHHHHHhhcCC--HHHHHHHHHc---CChHHHHHHhc--------cCChhhHHH
Q 043950          275 NHG--AVPCLLALLIHNHKKSIKKVACWTISNITAGN--REQIQAVIDA---GLIVPLVNVLQ--------DAEFDIKKE  339 (458)
Q Consensus       275 ~~~--~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~--~~~~~~l~~~---~~~~~L~~ll~--------~~~~~~~~~  339 (458)
                      +..  +++.+..++.   +++++..|+.+|..++...  ++....++..   ..+..++..+.        +.+.++.+.
T Consensus       245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~  321 (1204)
T 3a6p_A          245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR  321 (1204)
T ss_dssp             TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred             hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence            332  6777776664   4578999999999999732  3433333321   01223444432        224566666


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHH-----------CCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950          340 AALAIANATVRGTHEQIKYLVR-----------EGCIKPLCDLLLCVDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       340 a~~~L~~l~~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~  393 (458)
                      .+..+..+..    .. ..+..           .++++.+..+..+++..+...++.....+++.
T Consensus       322 l~~ll~~lg~----~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          322 LCQVLCALGN----QL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHH----HH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH----HH-HHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            6666666652    11 11111           13466777777777777777777666666654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.95  E-value=1.2  Score=38.76  Aligned_cols=173  Identities=9%  Similarity=0.046  Sum_probs=102.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC----hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCc
Q 043950           68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGA----VPIFVKLLAS-PSDDVREQAVWALGNVAADSPG  142 (458)
Q Consensus        68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~  142 (458)
                      +..+.++++=+.  +.+.-++.+++-.+. .+.....+.+...    +..+...+.+ ..+.-+-.+++++.|+..... 
T Consensus       105 l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            466666663232  456667777776666 4555555543322    2234444433 456678889999999976654 


Q ss_pred             hhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHH
Q 043950          143 CRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTL  217 (458)
Q Consensus       143 ~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l  217 (458)
                      .++.+..  ....++..+.   .+.+..++..+...+.|++... ..........++..+..++. ..|.+....++.++
T Consensus       181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            4555443  2344444442   3456778888888888887543 11222333445555555554 45789999999999


Q ss_pred             HHhccCChhhHHHHHHhCcHHHHHHHhCC
Q 043950          218 SYLSYGTNDKIQVVIEAGVCRRLVELLGH  246 (458)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  246 (458)
                      +++...+.+..+.....|+-..+-+..+.
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99997665444433334554444444444

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.89  E-value=2.1  Score=44.70  Aligned_cols=172  Identities=15%  Similarity=0.149  Sum_probs=109.0

Q ss_pred             HHHHHHHhcc---cccHHHHHHHHHHHHHh----hcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950          153 LIPLLAQLNE---HAKLSMLRIATWTLSKL----CKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN  225 (458)
Q Consensus       153 l~~l~~~l~~---~~~~~~~~~a~~~l~~l----~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~  225 (458)
                      +..+..++..   ..++.++..+.-+++.+    |...+......+..+...+.+.+...+.+-+...+.+|+|+..  +
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--h
Confidence            4445555532   23455666665555544    4443333334456666667777778888888999999999862  2


Q ss_pred             hhHHHHHHhCcHHHHHHHhCC-----C--CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhc-cCChhhHHHH
Q 043950          226 DKIQVVIEAGVCRRLVELLGH-----P--SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI-HNHKKSIKKV  297 (458)
Q Consensus       226 ~~~~~~~~~~~i~~L~~ll~~-----~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~v~~~  297 (458)
                               ..++.+.+++..     .  ...++..|+++|.+++...+...        -+.++++.. ...++++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHH
Confidence                     245667777642     1  23477889999999987655443        334566663 2237899999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHhhcCCCH
Q 043950          298 ACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD-AEFDIKKEAALAIANATVRGTH  353 (458)
Q Consensus       298 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~  353 (458)
                      |+..|.... .+..         .+..+...+.. .+..|.......|.+++....+
T Consensus       534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            988886543 2222         34455555654 5788888888888888876654

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.31  E-value=2.7  Score=38.03  Aligned_cols=157  Identities=13%  Similarity=0.162  Sum_probs=98.0

Q ss_pred             HHHHhhcCCCHHHH-HHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHc
Q 043950           27 AMVAGVWSDDNSLQ-LEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR----E------DYPQLQYEAAWALTNIA   95 (458)
Q Consensus        27 ~l~~~l~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----~------~~~~i~~~a~~~L~~l~   95 (458)
                      ..++.|++....-. ...+..|.-.+...+....+.+. .+++..|+..|..    .      .+...+..+++||..+.
T Consensus         8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm   86 (386)
T 2bnx_A            8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   86 (386)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            34555554332211 22334444333433234455554 5667777777742    1      12577889999999999


Q ss_pred             CCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-ch-hhHHh----------hhCCHHHHHHHhcc
Q 043950           96 SGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSP-GC-RNLVL----------REEALIPLLAQLNE  162 (458)
Q Consensus        96 ~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~l~~l~~~l~~  162 (458)
                      . +....+.+.. .+++..+...+.++++.++..++..|..+|.... .. ...+.          +..-+..++..+..
T Consensus        87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence            8 5556665554 4678999999999999999999999999986553 22 22222          22345567777755


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCC
Q 043950          163 HAKLSMLRIATWTLSKLCKGKPQ  185 (458)
Q Consensus       163 ~~~~~~~~~a~~~l~~l~~~~~~  185 (458)
                      +.+.+.+..++..+..+....+.
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~~d  188 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPAEE  188 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             CChHHHHHHHHHHHHHHHCCCCC
Confidence            66667777777777777766543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.21  E-value=0.52  Score=41.05  Aligned_cols=109  Identities=11%  Similarity=0.054  Sum_probs=70.2

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC---Cchh
Q 043950           70 RFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAADS---PGCR  144 (458)
Q Consensus        70 ~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~  144 (458)
                      .+...+.++..+..+..++++++|+.. ++..++.+...  .+++.+...+.+.+..++..++..+.|++...   ... 
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~-  228 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI-  228 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-
Confidence            344444444336779999999999998 57777776643  34455555555678899999999999998421   111 


Q ss_pred             hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       145 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      +.  ....+..+...+....|++....++-++.+|...
T Consensus       229 ~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          229 EG--KAQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            11  0112333444444456777888888888888764

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=93.87  E-value=0.44  Score=35.76  Aligned_cols=100  Identities=12%  Similarity=0.104  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHH-h
Q 043950          338 KEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVE-E  416 (458)
Q Consensus       338 ~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~  416 (458)
                      ...+.=+.+++.....+....     +++.|..-|..+++.++.+++.+|..++..+...            |...+. .
T Consensus        29 gylm~EIA~~T~~s~~~~~~e-----im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~   91 (140)
T 1vdy_A           29 VYKLEEICDLLRSSHVSIVKE-----FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRN   91 (140)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHT
T ss_pred             HHHHHHHHHHHHhcchhHHHH-----HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHh
Confidence            334444555554433233333     4778888888899999999999999998765543            444444 3


Q ss_pred             cchHHHHHhhhcCCC--------hHHHHHHHHHHHHhcCCCCCCCC
Q 043950          417 DEGFKKIEGLKSHDN--------NGIREKAVKILETYWCGRVVGPQ  454 (458)
Q Consensus       417 ~~~~~~l~~l~~~~~--------~~v~~~a~~~l~~~~~~~~~~~~  454 (458)
                      ...++.+.++..-++        ..|+..|..+++-+|+.+...++
T Consensus        92 ~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~~  137 (140)
T 1vdy_A           92 SVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGSGP  137 (140)
T ss_dssp             THHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSCCCC
T ss_pred             HHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCCCCC
Confidence            444555555543333        56999999999999998877543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=93.81  E-value=0.18  Score=38.25  Aligned_cols=75  Identities=5%  Similarity=-0.030  Sum_probs=61.9

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      ++..+..-+.+.++.++..|+..|-.++.++...+...+.+..++..+..++...++.|+.+++.++........
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~  117 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK  117 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence            466677778888999999999999999999888887777777778888888877889999999999887765433

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.66  E-value=4.6  Score=42.14  Aligned_cols=166  Identities=14%  Similarity=0.158  Sum_probs=109.5

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHHhhc----CCCchhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHh
Q 043950          111 VPIFVKLLAS----PSDDVREQAVWALGNVAA----DSPGCRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       111 i~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l  179 (458)
                      +..+..++.+    .++.+++.++.+++++..    ..+.|..     ..++.+...+.   ...+.+-+..++.+|.|+
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            5566666665    567788888888887763    3233221     22344444432   344566678889999998


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC--CCCcc
Q 043950          180 CKGKPQPPFDQVRPALPALAQLIHL-------DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG--HPSPS  250 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~  250 (458)
                      -.          ...++.+.+++..       ....++..|+++|..++...+...+        +.+.++..  ..+.+
T Consensus       468 g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          468 GQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             TC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence            54          2456677777642       2356888999999999865544333        56677773  45778


Q ss_pred             chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCC
Q 043950          251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN  309 (458)
Q Consensus       251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~  309 (458)
                      +|..|+..|..-   +|..       ..+..+...+..+++.+|.......|.+++...
T Consensus       530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            888888887432   2322       246667778877668899999999999998743

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=93.61  E-value=0.19  Score=38.40  Aligned_cols=75  Identities=11%  Similarity=-0.085  Sum_probs=63.6

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ++..+..-+.+.++.++..|+..|-.++.++...+...+....++..|+.++..      .++.|+.+++.++.......
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            466777778889999999999999999999998888888888889999988863      57889999999998887654


Q ss_pred             h
Q 043950          395 E  395 (458)
Q Consensus       395 ~  395 (458)
                      .
T Consensus       129 ~  129 (149)
T 3g2s_A          129 P  129 (149)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=92.80  E-value=0.4  Score=36.67  Aligned_cols=74  Identities=11%  Similarity=-0.097  Sum_probs=62.5

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ++..+..-+.+.++.++..|+..|-.++.++...+...+.+..++..|..++..      .++.|+.+++.++.......
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            466677778899999999999999999999988888888888899999988863      47789999998888776543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=92.78  E-value=0.26  Score=38.45  Aligned_cols=73  Identities=4%  Similarity=-0.032  Sum_probs=60.4

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHh
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~  393 (458)
                      ++..+.+-+.+.++.++..|+..|-.++.++...+...+....+++.|..++.. .++.|+.+++.++......
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~  126 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE  126 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            456677778888999999999999999999888888777777888888888865 5778999999888776654

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=92.57  E-value=0.67  Score=35.03  Aligned_cols=80  Identities=14%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHH
Q 043950          364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILE  443 (458)
Q Consensus       364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  443 (458)
                      ++..|..-+.+.++.++..|+.+|..+++.....            |...+.....++.+..+....+++|+++...++.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~  110 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV  110 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            4666777788899999999999999988865432            5556666666777777766678999999999988


Q ss_pred             HhcCCCCCCCCC
Q 043950          444 TYWCGRVVGPQL  455 (458)
Q Consensus       444 ~~~~~~~~~~~~  455 (458)
                      .....=..+|+|
T Consensus       111 ~W~~~f~~~~~l  122 (140)
T 3ldz_A          111 EWTDEFKNDPQL  122 (140)
T ss_dssp             HHHHHHTTCGGG
T ss_pred             HHHHHhCCCCCc
Confidence            764433344444

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=92.30  E-value=1.1  Score=38.43  Aligned_cols=134  Identities=12%  Similarity=0.082  Sum_probs=87.5

Q ss_pred             chhhHHHHHhHhhcCChhhHHHHH-hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH--cCChHHHHH
Q 043950          251 VLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID--AGLIVPLVN  327 (458)
Q Consensus       251 ~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--~~~~~~L~~  327 (458)
                      ....|+..|..++.......+.+- +..++..|+ +.... ++.+++.|+.+|+...+.+|+.+..+.+  ..++..++.
T Consensus        44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~  121 (315)
T 3qml_C           44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA  121 (315)
T ss_dssp             HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence            455677777777753333323222 223444444 22334 6789999999999999999999888875  345555555


Q ss_pred             Hhcc-------CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--CHHHHHHHHHHHHHHHH
Q 043950          328 VLQD-------AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV--DPKIVTVCLEGLENILK  392 (458)
Q Consensus       328 ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~~~~~l~~l~~  392 (458)
                      -|..       ...-+++.-+.+|--|+... ..+     ...++..|..++...  ++.++.+++.++..++.
T Consensus       122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          122 ALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            4433       23356677777777777653 112     234567777777656  88999999999999986

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=91.62  E-value=0.74  Score=35.82  Aligned_cols=80  Identities=13%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC-CChHHHHHHHHHH
Q 043950          364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH-DNNGIREKAVKIL  442 (458)
Q Consensus       364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~~l  442 (458)
                      ++..|..-+.+.++.++..|+.+|..+++....            .|...+.....++.+..+... .++.|++++..++
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~------------~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li  120 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK------------IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM  120 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH------------HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH------------HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            356677778889999999999999999987443            256666666677777777544 6789999999988


Q ss_pred             HHhcCCCCCCCCC
Q 043950          443 ETYWCGRVVGPQL  455 (458)
Q Consensus       443 ~~~~~~~~~~~~~  455 (458)
                      +.....-..+|++
T Consensus       121 ~~W~~~f~~~~~l  133 (163)
T 1x5b_A          121 VEWSEEFQKDPQF  133 (163)
T ss_dssp             HHHHHHTTTCSTT
T ss_pred             HHHHHHhcCCccc
Confidence            8764433344443

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=91.48  E-value=0.45  Score=37.40  Aligned_cols=74  Identities=12%  Similarity=-0.027  Sum_probs=61.8

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ++..|.+-+.+.++.++..|+..|-.++.++...+...+.+..++..|+.++..      .+..|+.+++.++.......
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  130 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  130 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            456777888889999999999999999999888888788888888889988862      46789999999988876543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=90.45  E-value=7.2  Score=32.84  Aligned_cols=100  Identities=9%  Similarity=0.028  Sum_probs=70.4

Q ss_pred             HHHHHHhhc---C-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950           25 LPAMVAGVW---S-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM  100 (458)
Q Consensus        25 i~~l~~~l~---~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~  100 (458)
                      -..++++|+   . .+ ..+...+.....++....+...     ..+++.++.+..+++ .++|...+..+...+...++
T Consensus        14 ~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~   86 (257)
T 3gs3_A           14 RAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVE   86 (257)
T ss_dssp             HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHH
Confidence            344455554   2 34 6888888899987776422222     246778888776766 89999999999888865444


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 043950          101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV  136 (458)
Q Consensus       101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  136 (458)
                      ...     ..++.|..++.+.++.+...++.+..++
T Consensus        87 l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           87 LLP-----HVINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             GHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            333     3367888888888898888888877666

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.20  E-value=6.4  Score=33.81  Aligned_cols=151  Identities=11%  Similarity=0.085  Sum_probs=94.3

Q ss_pred             hhHHHHHHhhcCC------ChHHHHHHHHHHHHhccCChhhHHHHH-HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC
Q 043950          193 PALPALAQLIHLD------DEEVLSDACWTLSYLSYGTNDKIQVVI-EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG  265 (458)
Q Consensus       193 ~~l~~l~~ll~~~------~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~  265 (458)
                      .-+..+..+++++      +......++..|..++.......+.+. +...+..|+ +.....+.+++.|.++|+...+.
T Consensus        22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN  100 (315)
T 3qml_C           22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN  100 (315)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence            3344455556554      455677788888887744333333222 334555555 33445667899999999999999


Q ss_pred             ChhhHHHHHh--cCChHHHHHHhcc----C--ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--Chh
Q 043950          266 DDFQTQCIIN--HGAVPCLLALLIH----N--HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFD  335 (458)
Q Consensus       266 ~~~~~~~~~~--~~~~~~l~~ll~~----~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~  335 (458)
                      +|.....+.+  ..++..+..-|..    +  ....+.+.-+.+|.-+...+..    + ....+..|.+++...  +..
T Consensus       101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~  175 (315)
T 3qml_C          101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQ  175 (315)
T ss_dssp             CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHH
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHH
Confidence            9998887764  2444444444332    1  1234556667777777765411    1 134667788888776  889


Q ss_pred             hHHHHHHHHHHhhc
Q 043950          336 IKKEAALAIANATV  349 (458)
Q Consensus       336 ~~~~a~~~L~~l~~  349 (458)
                      ++..++..+..+..
T Consensus       176 ~k~Kvl~li~d~f~  189 (315)
T 3qml_C          176 LQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc
Confidence            99988888887763

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=88.56  E-value=13  Score=33.31  Aligned_cols=88  Identities=9%  Similarity=0.101  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 043950           38 SLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL  117 (458)
Q Consensus        38 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  117 (458)
                      ..+...+..+.+++... +..    .-.++++.++.+-.+++ .++|...+..|...+....+...     .+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46788888888876643 221    22468999999988888 89999999999888874444432     336788888


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 043950          118 LASPSDDVREQAVWALGNV  136 (458)
Q Consensus       118 l~~~~~~~~~~a~~~L~~l  136 (458)
                      +.+.++.+...++.+..++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            8888898888888887776

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=87.67  E-value=0.93  Score=34.59  Aligned_cols=74  Identities=9%  Similarity=-0.032  Sum_probs=59.1

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHcC
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIAS   96 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~i~~~a~~~L~~l~~   96 (458)
                      +++..+.+.|++.++.+++.|+..|-.+....+.....++....++..|++++..     ...+.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            3577788888999999999999999988877645556677777889999999874     1237899999988887765

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=86.71  E-value=6.6  Score=35.27  Aligned_cols=119  Identities=21%  Similarity=0.176  Sum_probs=79.1

Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcc
Q 043950          320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKN  399 (458)
Q Consensus       320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~  399 (458)
                      .+++.++.+-.+.+.++|+.++..+...+.. ..+....     +++.|..++.++++.|.+.++.+..+++...-..-.
T Consensus        63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~  136 (386)
T 3o2t_A           63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV  136 (386)
T ss_dssp             GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5888899988888999999999999888764 2233222     467788888889999999988888777643222110


Q ss_pred             cCCCCC-chhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          400 TGSTIG-DVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       400 ~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      ...+.. ..+.....+.  .....+.++..+.+..++-.|.+++++..
T Consensus       137 ~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          137 KSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             HC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            000000 0012233322  23556666778889999999999988864

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=86.27  E-value=1.4  Score=36.52  Aligned_cols=75  Identities=11%  Similarity=0.036  Sum_probs=61.1

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhch
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      ++..|..-+.+.++.++..|+..|-.++.++...+...+....+++.|..+++ ..++.|+.+++.++........
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  121 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR  121 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence            56667777888999999999999999999888877777777777777877775 3577899999999988876443

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=86.26  E-value=11  Score=31.70  Aligned_cols=138  Identities=17%  Similarity=0.182  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 043950          293 SIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL  371 (458)
Q Consensus       293 ~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l  371 (458)
                      ..|.....-+..++.+ ++....     .+++.++.+..+.+.++|+..+..+...+... .+....     +++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~~-----~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLPH-----VINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHH
Confidence            3555555555555443 222222     25666666666778999999999998887532 222222     57788888


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCc----hhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          372 LLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGD----VNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       372 l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      ++++++.|.+.++.+...++...-..--..   +.    .......+  ......+.++..+.+..++-.|.+.+++..
T Consensus        99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~---~~~~~~~~~~W~~m--~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSL---MEPGDSAEQAWNIL--SLIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHHTTS---SSCCHHHHHHHHHH--HHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcchHHHHHHHH--HHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            888999999999988888776433221110   01    11223332  233566777778899999999999988864

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=86.14  E-value=3.8  Score=32.06  Aligned_cols=70  Identities=13%  Similarity=0.140  Sum_probs=54.5

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc------CCChHHHHH
Q 043950          364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS------HDNNGIREK  437 (458)
Q Consensus       364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~  437 (458)
                      ++..|..-+.+.++.++..|+.+|..+++.....            |...+.....++.|..+..      ..+.+|+++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  118 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  118 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            3566777788999999999999999999875432            5666777777888888764      246889999


Q ss_pred             HHHHHHHh
Q 043950          438 AVKILETY  445 (458)
Q Consensus       438 a~~~l~~~  445 (458)
                      +..+++..
T Consensus       119 il~li~~W  126 (171)
T 1juq_A          119 VIELLYSW  126 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888765

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=86.12  E-value=3.5  Score=31.40  Aligned_cols=71  Identities=13%  Similarity=0.123  Sum_probs=56.2

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc------CCChHHHHH
Q 043950          364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS------HDNNGIREK  437 (458)
Q Consensus       364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~  437 (458)
                      ++..|..-+.+.++.++..++.+|..+++.....            |...+....+++.|..+..      ..+++|+++
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  116 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  116 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence            4666777788999999999999999998865543            6677777778888888764      357899999


Q ss_pred             HHHHHHHhc
Q 043950          438 AVKILETYW  446 (458)
Q Consensus       438 a~~~l~~~~  446 (458)
                      ...+++...
T Consensus       117 il~li~~W~  125 (149)
T 3g2s_A          117 ILELLYSWT  125 (149)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887753

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=85.57  E-value=3.1  Score=34.27  Aligned_cols=78  Identities=17%  Similarity=0.168  Sum_probs=55.3

Q ss_pred             hHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cCCChHHHHHHHHHHH
Q 043950          365 IKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SHDNNGIREKAVKILE  443 (458)
Q Consensus       365 l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~  443 (458)
                      +..|..-+.+.++.++..++.+|..++++....            |...+.....++.+..+. +..+++|++++..+++
T Consensus        44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~  111 (220)
T 1dvp_A           44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ  111 (220)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            556667778899999999999999999875432            455555666677777664 4567899999888887


Q ss_pred             HhcCCCCCCCC
Q 043950          444 TYWCGRVVGPQ  454 (458)
Q Consensus       444 ~~~~~~~~~~~  454 (458)
                      ..-..-..+|.
T Consensus       112 ~W~~~f~~~~~  122 (220)
T 1dvp_A          112 TWAYAFRSSDK  122 (220)
T ss_dssp             HHHHHTTTCSS
T ss_pred             HHHHHhccchH
Confidence            76433333343

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=84.42  E-value=2.6  Score=32.46  Aligned_cols=73  Identities=8%  Similarity=0.060  Sum_probs=57.9

Q ss_pred             ChHHHHHHhc-cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHH-HHhhccC---CCHHHHHHHHHHHHHHHHh
Q 043950          321 LIVPLVNVLQ-DAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKP-LCDLLLC---VDPKIVTVCLEGLENILKV  393 (458)
Q Consensus       321 ~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~~~~~l~~l~~~  393 (458)
                      ++..+..-++ +.++.++..|+..|-.++.++...+...+.+..+++. |+.++..   ++..|+.+++.++......
T Consensus        54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~  131 (157)
T 1elk_A           54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA  131 (157)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            4556777776 4789999999999999999988888888777788887 7777742   3458999999888877654

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=83.49  E-value=3.1  Score=34.36  Aligned_cols=72  Identities=13%  Similarity=0.227  Sum_probs=53.6

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cCCChHHHHHHHHHH
Q 043950          364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SHDNNGIREKAVKIL  442 (458)
Q Consensus       364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~~l  442 (458)
                      ++..|..-+.+.++.++..|+.+|..+++.....            |...+.....++.|..+. ...+++|++++..++
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li  113 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI  113 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            3566777778999999999999999998875542            455566666666666664 446788999999988


Q ss_pred             HHhcC
Q 043950          443 ETYWC  447 (458)
Q Consensus       443 ~~~~~  447 (458)
                      +....
T Consensus       114 ~~W~~  118 (226)
T 3zyq_A          114 QAWAH  118 (226)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=83.41  E-value=25  Score=31.67  Aligned_cols=230  Identities=14%  Similarity=0.051  Sum_probs=111.3

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                      ..++...+..|+.++.++++.-|...-.+|.++-..-...|..+.. ..-..+...+-......-....+.+++.+..+-
T Consensus       124 ~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGf  202 (403)
T 3fga_B          124 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGF  202 (403)
T ss_dssp             TTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHC
T ss_pred             hhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHccc
Confidence            3344456778999999999999999988888875443333433322 111222222211111111223444555554443


Q ss_pred             CCCCh-hhhhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchhh--HHHH
Q 043950          184 PQPPF-DQVRPALPALAQLIHLDDE-EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTP--ALWT  258 (458)
Q Consensus       184 ~~~~~-~~~~~~l~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~--a~~~  258 (458)
                      ..+-. .........++++-+...- ..-.....|+......++.....        .+-.++++ +.......  -+.-
T Consensus       203 a~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~--------vi~~LLk~WP~tns~KevlFL~E  274 (403)
T 3fga_B          203 ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEVMFLNE  274 (403)
T ss_dssp             CSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHTCCSSCHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH--------HHHHHHHhCCCCCcHHHHHHHHH
Confidence            22222 2223334445555554432 12233344444444444433332        22223333 21112222  2333


Q ss_pred             HhHhhcC-ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH---cCChHHHHHHh----c
Q 043950          259 VGNIVMG-DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID---AGLIVPLVNVL----Q  330 (458)
Q Consensus       259 l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~ll----~  330 (458)
                      +..+... .+.....+. ..++..+...+.++ +.+|.+.|.....|      +.+..++.   ..++|.+...+    .
T Consensus       275 le~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnN------e~i~~li~~n~~~IlPii~p~L~~~~~  346 (403)
T 3fga_B          275 LEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSK  346 (403)
T ss_dssp             HHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhcc------HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3444432 233333322 34678888888888 88888877654421      22222222   12455554444    2


Q ss_pred             cC-ChhhHHHHHHHHHHhhcC
Q 043950          331 DA-EFDIKKEAALAIANATVR  350 (458)
Q Consensus       331 ~~-~~~~~~~a~~~L~~l~~~  350 (458)
                      +. +..++..+..++.-+...
T Consensus       347 ~HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          347 THWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             CCSCHHHHHHHHHHHHHHHTT
T ss_pred             HccCHHHHHHHHHHHHHHHHh
Confidence            22 778888888888777653

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=80.11  E-value=1.4  Score=36.30  Aligned_cols=74  Identities=12%  Similarity=0.058  Sum_probs=55.2

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS   96 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~   96 (458)
                      +++..+.+.|++.++.+++.|+..|-.++..-+.....++....+++.|++++.+..+..++..++..+...+.
T Consensus        42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (220)
T 1dvp_A           42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (220)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            34667788888999999999999998887764333445666667888888888755447888888877776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	458
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-100
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	6e-84
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-05
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-35
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-09
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-17
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-12
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	8e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-09
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-07
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	8e-11
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-08
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-04
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.001
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	5e-06
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	6e-05
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.001

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  307 bits (785), Expect = e-100
 Identities = 232/433 (53%), Positives = 292/433 (67%), Gaps = 7/433 (1%)

Query: 17  NLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLM 76
                 + LP M   + SDD   QL AT +FR +LS E  P I+ VIQAGVVPR VEF+ 
Sbjct: 70  FYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR 129

Query: 77  REDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 136
                 LQ EAAWALTNIASGTS  T VV+D  AVP+F++LL + S +V+EQA+WALGNV
Sbjct: 130 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV 189

Query: 137 AADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPAL 195
           A DS   R+ VL+  A+ P+L  L    K S++R ATWTLS LC+GK PQP +  V  AL
Sbjct: 190 AGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 248

Query: 196 PALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA 255
           P LA+LI+  D E L DACW +SYLS G  + IQ VI+  + +RLVELL H S  V TPA
Sbjct: 249 PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 308

Query: 256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA 315
           L  VGNIV G+D QTQ +IN G +P L  LL  + K++IKK ACWTISNITAGN EQIQA
Sbjct: 309 LRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQA 367

Query: 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLL 373
           VIDA LI PLV +L+ AE+  KKEA  AI+NA+  G    + I+YLV +GCIKPLCDLL 
Sbjct: 368 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 427

Query: 374 CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNG 433
             D +I+ V L+ LENILK+GEA+K       ++N+ A  +E+  G +KI   + ++N+ 
Sbjct: 428 IADNRIIEVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDK 485

Query: 434 IREKAVKILETYW 446
           I EKA KI+ETY+
Sbjct: 486 IYEKAYKIIETYF 498

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  262 bits (670), Expect = 6e-84
 Identities = 194/427 (45%), Positives = 275/427 (64%), Gaps = 13/427 (3%)

Query: 25  LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
           +  +V G+ S++   QL+AT   R LLS E+ P I+++I+AG++P+FV FL + D   +Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 85  YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144
           +E+AWALTNIASGTS  T  V+D GA+P F+ LLASP   + EQAVWALGN+A D    R
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 145 NLVLREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGKPQ-PPFDQVRPALPALA 199
           +LV++  A+ PLLA L            LR  TWTLS LC+ K   PP D V   LP L 
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 200 QLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTV 259
           +L+H +D EVL+D+CW +SYL+ G N++I++V++ GV  +LV+LLG     ++TPAL  +
Sbjct: 195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 254

Query: 260 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDA 319
           GNIV G D QTQ +I+ GA+    +LL  N K +I+K A WT+SNITAG ++QIQ V++ 
Sbjct: 255 GNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI 379
           GL+  LV VL  A+F  +KEAA AI N T  GT EQI YLV  G I+PL +LL   D KI
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 373

Query: 380 VTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAV 439
           + V L+ + NI +  E        +G+  + + ++EE  G  KIE L+ H+N  + + ++
Sbjct: 374 IQVILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 426

Query: 440 KILETYW 446
            ++E Y+
Sbjct: 427 NLIEKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 4/123 (3%)

Query: 276 HGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ-IQAVIDAGLIVPLVNVLQDAEF 334
           + +V  ++  +  N     +  A      + +  ++  I  +I AGLI   V+ L   + 
Sbjct: 12  NWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 335 -DIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV 393
             I+ E+A A+ N    GT EQ K +V  G I     LL      I    +  L NI   
Sbjct: 71  SPIQFESAWALTNI-ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 129

Query: 394 GEA 396
           G A
Sbjct: 130 GSA 132

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 2e-35
 Identities = 58/446 (13%), Positives = 120/446 (26%), Gaps = 68/446 (15%)

Query: 68  VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVRE 127
           +P+ V++L  +D  + Q   A+ + +           V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP 187
            A  AL N+   S   +    R+  +   ++ L       + +  T  L  L        
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 188 FDQVRPALPALAQLI---------------HLDDEEVLSDACWTLSYLSYGTNDKIQVVI 232
                       ++I                + D EV  +A   L  LS     +  +  
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN--- 289
            +G+   L+  + +   +           + +  +   +           L     N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 290 ----------HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKE 339
                         +              N +    +  +  I   +N++  ++ D   E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 340 AALAIANATVRGTHEQIKY-----LVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVG 394
           A                        ++E  +  +  LL   +  +V      L N+ +  
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362

Query: 395 EAEKNTGSTI---------------------------------GDVNQYARLVEEDEGFK 421
              +  G+ +                                     Q A+         
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 422 KIEGL-KSHDNNGIREKAVKILETYW 446
            I  L +S  +    E A  +L   W
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDMW 448

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 2e-13
 Identities = 32/307 (10%), Positives = 83/307 (27%), Gaps = 31/307 (10%)

Query: 65  AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDD 124
           +G              P++ + A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 125 VREQAVWALGNVAADS-----------------PGCRNLVLREEALIPLLAQLNEHAKLS 167
            R         +                              E++     +  ++    +
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 168 MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDK 227
                        KG               L  +     +  L      L  L+      
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNL--MGKSKKDATLEACAGALQNLTASKGLM 318

Query: 228 IQ-----VVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
                  + ++     ++  LL   +  V+      + N+          ++ +   P +
Sbjct: 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEV 376

Query: 283 LALLIHNHKKS-----IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIK 337
             LL  +   +     I   AC+T+ N+ A   +  +    + ++  ++N+ + +     
Sbjct: 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436

Query: 338 KEAALAI 344
            EAA  +
Sbjct: 437 AEAARLL 443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 2/100 (2%)

Query: 320 GLIVP-LVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK 378
           GL +P  V  L   +   +   A  I +          + + + G I  L DLL   +  
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTC-FQDESAKQQVYQLGGICKLVDLLRSPNQN 59

Query: 379 IVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE 418
           +       L N++      K        + +   L+    
Sbjct: 60  VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG 99

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (209), Expect = 2e-18
 Identities = 31/196 (15%), Positives = 64/196 (32%)

Query: 109 GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSM 168
            A+P   KLL      V  +A   +  ++        ++   + +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 169 LRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKI 228
            R    TL  L   +           +PAL +++    + VL  A  TL  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 229 QVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 288
             V  AG  +++V LL   +   L      +  +  G+      I+  G    L+ ++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 289 NHKKSIKKVACWTISN 304
              + +       +  
Sbjct: 197 YTYEKLLWTTSRVLKV 212

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (192), Expect = 2e-16
 Identities = 72/485 (14%), Positives = 145/485 (29%), Gaps = 64/485 (13%)

Query: 16  LNLQTKLEI----LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRF 71
           +N Q   E+    +P +   +  +D  +  +A      L S + + R   +    +V   
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIMRSPQMVSAI 64

Query: 72  VEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVW 131
           V  +   +  +     A  L N++         +   G +P  VK+L SP D V   A+ 
Sbjct: 65  VRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 123

Query: 132 ALGNVAADSPGCRNLVLREEALIPLLAQ-------------------------------- 159
            L N+     G +  V     L  ++A                                 
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183

Query: 160 ----------LNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEV 209
                     +  +    +L   +  L  L       P       + AL   +    + +
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL 243

Query: 210 LSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 269
           + +  WTL  LS     +       G+   LV+LLG    +V+T A   + N+   +   
Sbjct: 244 VQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

Query: 270 TQCIINHGAVPCLLALLIH-NHKKSIKKVACWTISNITAGN---REQIQAVIDAGLIVPL 325
              +   G +  L+  ++    ++ I + A   + ++T+ +        AV     +  +
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360

Query: 326 VNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE 385
           V +L         +A + +                 +G I  L  LL+            
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSM 419

Query: 386 G-----LENILKVGEAEKNTGSTIGD---VNQYARLVEEDEGFKKIEGLKSHDNNGIREK 437
           G         +++ E  +     +           ++           L       I+  
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV 479

Query: 438 AVKIL 442
           A  +L
Sbjct: 480 AAGVL 484

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (167), Expect = 4e-13
 Identities = 58/339 (17%), Positives = 103/339 (30%), Gaps = 26/339 (7%)

Query: 75  LMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALG 134
           +MR    +        +  + S  S N   +++ G +      L  PS  + +  +W L 
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

Query: 135 NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA 194
           N++  +     +      L+ LL   + +       I +       K K          A
Sbjct: 253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312

Query: 195 LPALAQLI--HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVL 252
           L           D  E    A   L+            V        +V+LL  PS   L
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372

Query: 253 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN-------- 304
             A   +   +         +   GA+P L+ LL+  H+ + ++ +              
Sbjct: 373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432

Query: 305 ------------ITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIAN-ATVRG 351
                       I A +      +     I   V +L     +I++ AA  +   A  + 
Sbjct: 433 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 492

Query: 352 THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390
             E I     EG   PL +LL   +  + T     L  +
Sbjct: 493 AAEAI---EAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 4e-11
 Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 23/199 (11%)

Query: 64  QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSD 123
               +P  V+ L    +  L       + N+A     N   + + GA+P  V+LL     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQ 411

Query: 124 DVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183
           D + +                               +       ++   T  L  L +  
Sbjct: 412 DTQRRTSMGGTQ---------------------QQFVEGVRMEEIVEGCTGALHILARDV 450

Query: 184 PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL 243
                 +    +P   QL++   E +   A   L  L+    +  + +   G    L EL
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTEL 509

Query: 244 LGHPSPSVLTPALWTVGNI 262
           L   +  V T A   +  +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 1e-10
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 50  LLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG 109
           L+ +      +   +  +     +F+      ++      AL  +A     N  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLN 460

Query: 110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSML 169
            +P+FV+LL SP ++++  A   L  +A D        +  E     L +L       + 
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE--AIEAEGATAPLTELLHSRNEGVA 518

Query: 170 RIATWTLSKL 179
             A   L ++
Sbjct: 519 TYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (132), Expect = 7e-09
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 3/125 (2%)

Query: 13  RPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFV 72
           R   + Q +  +       V        +E  T    +L+ +   RI  +     +P FV
Sbjct: 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV-IRGLNTIPLFV 466

Query: 73  EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWA 132
           + L+      +Q  AA  L  +A         +   GA     +LL S ++ V   A   
Sbjct: 467 Q-LLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524

Query: 133 LGNVA 137
           L  ++
Sbjct: 525 LFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (197), Expect = 1e-17
 Identities = 37/243 (15%), Positives = 82/243 (33%), Gaps = 3/243 (1%)

Query: 53  IERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVP 112
           +E+      V+   + P   E     D  Q +  A   L ++        +     G   
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCENMDNAADFCQLSGMHL 62

Query: 113 IFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIA 172
           +  + L + +  +R +A   +G  + +    +  VL   AL  LL  L+  A  ++   A
Sbjct: 63  LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 122

Query: 173 TWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVV 231
            + +S L + +               L + +    +++   + + L  L  G  +    +
Sbjct: 123 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 182

Query: 232 IEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ-CIINHGAVPCLLALLIHNH 290
              G+ ++LV L+           L  + ++V       + C      +  LL       
Sbjct: 183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 242

Query: 291 KKS 293
           ++ 
Sbjct: 243 QQH 245

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 8e-12
 Identities = 53/312 (16%), Positives = 97/312 (31%), Gaps = 29/312 (9%)

Query: 2   LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNS--LQLEATTQFRILLSIERSPRI 59
           L++  ++     P        EIL A++ G+  ++ S  ++L AT      L   ++   
Sbjct: 150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 209

Query: 60  EDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA 119
           ++  +  ++    E     D  +++  A   L  I S         +      I ++ + 
Sbjct: 210 KESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 268

Query: 120 SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179
           S  D+V  Q +    NV  +                     ++      L+     L++ 
Sbjct: 269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 328

Query: 180 CKGKPQPPFDQ-----------------------VRPALPALAQLIHLDDEEVLSDACWT 216
              + +   D                        V   LP + + I   D      A   
Sbjct: 329 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMA 388

Query: 217 LSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 276
              +  G        +       L+EL+  PS  V   A WTVG I    +   +  IN 
Sbjct: 389 FGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAIND 445

Query: 277 GAVPCLLALLIH 288
             +  LL  LI 
Sbjct: 446 VYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 8/163 (4%)

Query: 1   DLQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIE 60
           +   Q   P              ++P +   +   D +   +     +          + 
Sbjct: 298 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM--LLA 355

Query: 61  DVIQAGVVPRFVEFL---MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
              +  +VP  + F+   ++    + +  A  A   I  G   +    +   A+P  ++L
Sbjct: 356 TCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 415

Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQL 160
           +  PS  VR+ A W +G +    P      + +  L PLL  L
Sbjct: 416 MKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCL 455

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 43/339 (12%), Positives = 111/339 (32%), Gaps = 27/339 (7%)

Query: 5    QRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQ 64
              F  +      N    +++L  +   V+S   +L  + +           +        
Sbjct: 753  LDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP 812

Query: 65   AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDD 124
            A V     +         ++  A  +L  +     ++  + +      + ++  +SPS++
Sbjct: 813  AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL----KSVILEAFSSPSEE 868

Query: 125  VREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRI-ATWTLSKLCKGK 183
            V+  A +ALG+++  +          E L  +L ++    K   L + +   +       
Sbjct: 869  VKSAASYALGSISVGNL--------PEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVV 920

Query: 184  PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL 243
               P+  V      L +     +E   +     L         K+ ++    +  RL   
Sbjct: 921  GLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGY 970

Query: 244  LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTIS 303
            L   S    +  +  V   +         ++ +     L  L   +   ++++VA  T +
Sbjct: 971  LISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTL--EDPDLNVRRVALVTFN 1028

Query: 304  NITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL 342
            +        I+ ++D   ++P +        ++ +E  +
Sbjct: 1029 SAAHNKPSLIRDLLDT--VLPHLYNETKVRKELIREVEM 1065

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 48/326 (14%), Positives = 106/326 (32%), Gaps = 25/326 (7%)

Query: 81  PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS 140
              ++ A   L       S+  +   +   V + +KLL   + +V+  AV  LG + +  
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 141 PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ--VRPALPAL 198
                   + E ++  L       K  +  I++  L  +    P               +
Sbjct: 77  KE-----YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 199 AQLIH-----LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253
              +       +D  V  +A   ++ +       +     + +   L+  L  P  +V  
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRK 190

Query: 254 PALWTVGNIV--MGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE 311
             +  +G++V   G+            +  LL+ L  N   S  +     I+ I+     
Sbjct: 191 RTIIALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244

Query: 312 QIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL 371
           +I   ++  +I  +V      + ++++    A  +   R   E   ++     I  +C  
Sbjct: 245 RIGEYLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST---IINICLK 300

Query: 372 LLCVDPKIVTVCLEGLENILKVGEAE 397
            L  DP       +  EN +     +
Sbjct: 301 YLTYDPNYNYDDEDEDENAMDADGGD 326

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 44/359 (12%), Positives = 100/359 (27%), Gaps = 22/359 (6%)

Query: 52  SIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGA- 110
           S      + +V +  ++P  +  L    +          +  + +        +I +   
Sbjct: 377 SAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 436

Query: 111 -VPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAK--LS 167
            +P  ++ L+     VR    W L   A            +  +  LL ++ +  K    
Sbjct: 437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 496

Query: 168 MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDK 227
               A  TL +    +  P    +   L          +  +L DA  TL+       +K
Sbjct: 497 AACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 556

Query: 228 IQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIV--MGDDFQT-------------QC 272
            + +            +       L P L  + ++   +   F               Q 
Sbjct: 557 PEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQK 616

Query: 273 IINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVP-LVNVLQD 331
            +    +            K    VA   +S +  G    I+ ++    I+  +   +QD
Sbjct: 617 TLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD 676

Query: 332 AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390
              ++++ +   + + T          +     +  L   L      +       +  I
Sbjct: 677 KMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEI 733

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 16/165 (9%)

Query: 57  PRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116
             IE ++    +   +   M++  P+++  +   L ++      +    I    +PI   
Sbjct: 655 GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGT 713

Query: 117 LLASPSDDVREQAVWALGNVA-----ADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRI 171
            L      V   A WA+G ++        P    ++     L+ ++     +   ++L  
Sbjct: 714 NLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL---HQLVEIIN--RPNTPKTLLEN 768

Query: 172 ATWTLSKLCKGKPQ---PPFDQVRPALPALAQLIHLDDEEVLSDA 213
              T+ +L    PQ   P   Q          L ++ D E    A
Sbjct: 769 TAITIGRLGYVCPQEVAPMLQQFIRPW--CTSLRNIRDNEEKDSA 811

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 45/321 (14%), Positives = 100/321 (31%), Gaps = 13/321 (4%)

Query: 22  LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYP 81
              L  ++  + S+D   +  +    +  +         + +   +    +  +     P
Sbjct: 45  NNYLIFVLTKLKSEDEPTRSLSGLILKNNVK-AHFQNFPNGVTDFIKSECLNNIGDSS-P 102

Query: 82  QLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141
            ++      +T IAS   +          +P    LL S   +  E A  AL  +  DS 
Sbjct: 103 LIRATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 158

Query: 142 GCRNLVLRE---EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPAL 198
              +  + +     +IP   Q  +H+   +   A   +++    + Q     +      L
Sbjct: 159 EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENL 218

Query: 199 AQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258
             L   ++ EV  + C  L  L     D++   +   +   +++       +V   AL  
Sbjct: 219 FALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEA 274

Query: 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID 318
               +   +      +    +P L+ +L++  K S   +                +  I 
Sbjct: 275 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334

Query: 319 AGLIVPLVNVLQDAEFDIKKE 339
                      Q  E  I++E
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEE 355

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 21/252 (8%), Positives = 50/252 (19%), Gaps = 29/252 (11%)

Query: 75  LMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALG 134
           L+ +     +  +A  L                  AV + ++  +  +   R+   + LG
Sbjct: 27  LLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILG 75

Query: 135 NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA 194
            +        N          L           +   A  + ++ CK  P      V  +
Sbjct: 76  QIKICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQS 129

Query: 195 LPALAQLIHLDDEEVLSDACW-------TLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP 247
                                        L        +       A             
Sbjct: 130 QITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI 189

Query: 248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307
               +         + +          +   +  L   L  N    +          +  
Sbjct: 190 RDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT---VYDDIIEAAGEL-- 244

Query: 308 GNREQIQAVIDA 319
           G++  +  +   
Sbjct: 245 GDKTLLPVLDTM 256

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 24/257 (9%), Positives = 57/257 (22%), Gaps = 36/257 (14%)

Query: 115 VKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATW 174
            +LL   +   R  +   L                 +  + L  +           I  +
Sbjct: 25  FRLLDDHNSLKRISSARVLQL------------RGGQDAVRLAIEFCSDKNYIRRDIGAF 72

Query: 175 TLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEA 234
            L ++   K              L  +  L+D+     A    S       + I      
Sbjct: 73  ILGQIKICKKCEDNV-----FNILNNMA-LNDKSACVRATAIESTAQRCKKNPI---YSP 123

Query: 235 GVCRRLVELLGHPSPSVLTPALWTVG----------NIVMGDDFQTQCIINHGAVPCLLA 284
            +  +        S +V     + +            I +  D              +  
Sbjct: 124 KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK 183

Query: 285 LLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAI 344
               + +    ++       +       +    D  ++  L + L+     +  +   A 
Sbjct: 184 YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAA 241

Query: 345 ANATVRGTHEQIKYLVR 361
                 G    +  L  
Sbjct: 242 GEL---GDKTLLPVLDT 255

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 17/104 (16%), Positives = 27/104 (25%), Gaps = 20/104 (19%)

Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH--------AKLSML 169
           +A  +  VR     AL              + +EA  PLL  L+          A +   
Sbjct: 1   MADENKWVRRDVSTALSR------------MGDEAFEPLLESLSNEDWRIRGAAAWIIGN 48

Query: 170 RIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDA 213
                 +  L K            A  +L Q+        +   
Sbjct: 49  FQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAMEKL 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.8
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.73
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.72
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.64
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.52
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.49
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.45
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.41
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.38
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.31
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.27
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.25
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.24
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.19
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.13
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.9
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.73
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.53
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.32
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.39
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.15
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.39
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.32
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.83
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.74
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.69
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.48
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	94.59
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	92.92
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	92.0
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	90.79
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	90.03
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	89.46
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	84.98
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	84.35

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-47  Score=363.50  Aligned_cols=426  Identities=54%  Similarity=0.813  Sum_probs=387.8

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN  101 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~  101 (458)
                      .+.++.+++.+.+++...+..|+..++++++.+..++...+++.|++|.|+++++.+.+++++..|+++|.+++.+++..
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            45699999999999999999999999999887767788999999999999999987665889999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950          102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK  181 (458)
Q Consensus       102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~  181 (458)
                      ...+.+.|+++.++.++.+++.++++.++|+|+|++.+.+..++.+.+.|++++++.++ .+.++.+++.++|++.+++.
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCR  233 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999989999999999999999998 67778899999999999998


Q ss_pred             CC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950          182 GK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG  260 (458)
Q Consensus       182 ~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~  260 (458)
                      .. +........+++|.+..++.+.|++++..+++++.+++...++....+.+.|+++.++.++.+++..++..++.+++
T Consensus       234 ~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~  313 (503)
T d1wa5b_         234 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG  313 (503)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence            76 45556667899999999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHH
Q 043950          261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEA  340 (458)
Q Consensus       261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a  340 (458)
                      +++.+.+.....+++.|+++.+..++.++ ++.+++.++|+++|++.+++.....+.+.|+++.++..+.+.+.+++.+|
T Consensus       314 nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a  392 (503)
T d1wa5b_         314 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  392 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHH
Confidence            99998888888899999999999999998 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcc
Q 043950          341 ALAIANATVRG--THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE  418 (458)
Q Consensus       341 ~~~L~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (458)
                      +|++.|++..+  .++....+.+.|+++.|+++++..++++...++.+|.++++.++.......  ...+.+...+.+.|
T Consensus       393 ~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~--~~~~~~~~~iee~g  470 (503)
T d1wa5b_         393 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEKAG  470 (503)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHTT
T ss_pred             HHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhc--ccchHHHHHHHHCC
Confidence            99999998754  346778889999999999999999999999999999999987654321100  13467889999999


Q ss_pred             hHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950          419 GFKKIEGLKSHDNNGIREKAVKILETYWCGRVV  451 (458)
Q Consensus       419 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  451 (458)
                      |++.|..|++|++++|++.|.+++++||++||+
T Consensus       471 ~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         471 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             HHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            999999999999999999999999999988874

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-46  Score=351.69  Aligned_cols=417  Identities=47%  Similarity=0.772  Sum_probs=381.7

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT  102 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~  102 (458)
                      .+++.+++.+++++++.+..|+.+++++++.........+++.|++|.|++++++.++++++..|+++|.+++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            57999999999999999999999999998876566678899999999999999876657899999999999999888999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc----cHHHHHHHHHHHHH
Q 043950          103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA----KLSMLRIATWTLSK  178 (458)
Q Consensus       103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~l~~  178 (458)
                      ..+++.|+++.++.++.++++.+++.++++|+|++.+.+..+..+.+.|+++.++..+....    .......++|++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888999999999999999995432    23566788999999


Q ss_pred             hhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHH
Q 043950          179 LCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW  257 (458)
Q Consensus       179 l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  257 (458)
                      ++... +........++++.+..++.+++++++..+++++.+++..++.....+...|+++.+++++.+++..++..++.
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99876 34444556889999999999999999999999999999888877787888999999999999999999999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhH
Q 043950          258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIK  337 (458)
Q Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~  337 (458)
                      ++++++..++.....+++.|+++.+..+++++ ++.++..|+|++++++.++++....+.+.|+++.++.++.+++++++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~  331 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  331 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence            99999998888888999999999999999998 99999999999999999888888899999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhc
Q 043950          338 KEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEED  417 (458)
Q Consensus       338 ~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (458)
                      ..|++++.+++..++.+....+.+.|+++.|+++++..+++++..++++|.++++..+..       +..+.+...+++.
T Consensus       332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~-------~~~~~~~~~~~~~  404 (434)
T d1q1sc_         332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEEC  404 (434)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhc-------CCcHHHHHHHHHc
Confidence            999999999999888888899999999999999999999999999999999999877654       2456789999999


Q ss_pred             chHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          418 EGFKKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       418 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      |+++.|+.|++|+++++++.|.++|++||.
T Consensus       405 ~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         405 GGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999994

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-36  Score=292.33  Aligned_cols=386  Identities=24%  Similarity=0.351  Sum_probs=335.7

Q ss_pred             cccCCCCCCCCChhhHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHH
Q 043950            5 QRFLPSAPRPSLNLQTKLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQL   83 (458)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i   83 (458)
                      ++.+.....++.......|.+|.|++++++ .++.++..|+++|.+++++. +.....+.+.|+++.++.++.+++ .++
T Consensus       101 r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i  178 (503)
T d1wa5b_         101 RQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEV  178 (503)
T ss_dssp             HHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHH
T ss_pred             HHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhH
Confidence            344544555555556678999999999985 56889999999999998765 566778889999999999999988 899


Q ss_pred             HHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc
Q 043950           84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH  163 (458)
Q Consensus        84 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~  163 (458)
                      +..|+|+|+|++.++++.+..+.+.|+++.|+.++.+.+..++..++|++.+++.............++++.++..+ .+
T Consensus       179 ~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~  257 (503)
T d1wa5b_         179 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YS  257 (503)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-cc
Confidence            99999999999998899999999999999999999999999999999999999977655445555667899999888 77


Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH
Q 043950          164 AKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE  242 (458)
Q Consensus       164 ~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~  242 (458)
                      .+++++..++|++.+++...+.. ......++++.++.++.+++..++..++.++++++...+.....+.+.|+++.+..
T Consensus       258 ~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~  337 (503)
T d1wa5b_         258 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL  337 (503)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHH
Confidence            88999999999999999865332 22334789999999999999999999999999999888888888899999999999


Q ss_pred             HhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc---CCHHHHHHHHHc
Q 043950          243 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA---GNREQIQAVIDA  319 (458)
Q Consensus       243 ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~  319 (458)
                      ++.++++.++..++|+++|++.+++.....+++.++++.++.++.++ +.+++.+|+|+++|++.   ..++.+..+++.
T Consensus       338 ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~  416 (503)
T d1wa5b_         338 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQ  416 (503)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHT
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHC
Confidence            99999999999999999999998988888999999999999999999 89999999999999986   235678889999


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHhhcCC----------CHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHH
Q 043950          320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRG----------THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLEN  389 (458)
Q Consensus       320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----------~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~  389 (458)
                      |+++.|++++...+.++...++.+|.++...+          .......+.+.|+++.|..+..++++++...|.++|..
T Consensus       417 ~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~  496 (503)
T d1wa5b_         417 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET  496 (503)
T ss_dssp             TCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999987432          12345567788999999888889999999999999998


Q ss_pred             HHHhc
Q 043950          390 ILKVG  394 (458)
Q Consensus       390 l~~~~  394 (458)
                      +|..+
T Consensus       497 ~f~~~  501 (503)
T d1wa5b_         497 YFGEE  501 (503)
T ss_dssp             HSSSC
T ss_pred             HcCCc
Confidence            88644

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-35  Score=279.49  Aligned_cols=374  Identities=26%  Similarity=0.403  Sum_probs=325.0

Q ss_pred             CCChhhHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 043950           14 PSLNLQTKLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALT   92 (458)
Q Consensus        14 ~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~   92 (458)
                      ++-+...+.|.+|.|+++|++ +++.+|..|+++|.++++.. ++....+++.|+++.|++++.+++ +++++.|+++|+
T Consensus        47 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~  124 (434)
T d1q1sc_          47 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALG  124 (434)
T ss_dssp             CCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred             chHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHH
Confidence            333456678999999999975 56889999999999998765 567888999999999999999988 899999999999


Q ss_pred             HHcCCChhhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHH
Q 043950           93 NIASGTSMNTNVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLS  167 (458)
Q Consensus        93 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~  167 (458)
                      +++.++++.+..+.+.|+++.++.++...+     ......+++++.+++...+.........+.++.++.++ .+.+++
T Consensus       125 nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~  203 (434)
T d1q1sc_         125 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPE  203 (434)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHH
T ss_pred             HHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccc
Confidence            999988899999999999999999997643     35567788999999987655555555567788888887 778899


Q ss_pred             HHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC
Q 043950          168 MLRIATWTLSKLCKGKPQPPF-DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH  246 (458)
Q Consensus       168 ~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  246 (458)
                      ++..++|++.+++...+.... ....++++.++.++.++++.++..+++++.+++..++.....+.+.|+++.++.++.+
T Consensus       204 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~  283 (434)
T d1q1sc_         204 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN  283 (434)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC
T ss_pred             hhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcc
Confidence            999999999999887532222 2337899999999999999999999999999998888778888999999999999999


Q ss_pred             CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHH
Q 043950          247 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPL  325 (458)
Q Consensus       247 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L  325 (458)
                      ++++++..+++++++++.........+.+.|+++.++.++.++ +++++..|+|+++|++. ++++....+.+.|+++.|
T Consensus       284 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L  362 (434)
T d1q1sc_         284 PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL  362 (434)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred             cchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHH
Confidence            9999999999999999998888888888999999999999998 89999999999999997 567888889999999999


Q ss_pred             HHHhccCChhhHHHHHHHHHHhhcC-----CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950          326 VNVLQDAEFDIKKEAALAIANATVR-----GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL  391 (458)
Q Consensus       326 ~~ll~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~  391 (458)
                      ++++...+++++..+++++.+++..     ..+.....+.+.|+++.|..+..+++++++..+.++|.++|
T Consensus       363 ~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         363 MNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999742     23345666778999999999989999999999999998875

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-33  Score=267.31  Aligned_cols=405  Identities=18%  Similarity=0.175  Sum_probs=345.3

Q ss_pred             hhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950           18 LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG   97 (458)
Q Consensus        18 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~   97 (458)
                      ...+.|++|.|+++|+++++.++..|+++|.+++.+. +.....+.+.|+++.|++++++++ ++++..++++|.+++..
T Consensus        96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_          96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhh
Confidence            3455688999999999999999999999999998875 556677889999999999999998 89999999999999998


Q ss_pred             ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHH
Q 043950           98 TSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTL  176 (458)
Q Consensus        98 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l  176 (458)
                      +++.+..+...|+++.++.++.. ....++..+++++.+++.+ +..+..+.+.|+++.++.++ .++++.++..+++++
T Consensus       174 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l  251 (529)
T d1jdha_         174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTL  251 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHh-cccchhhhhhhhhHH
Confidence            88899999999999999999965 5678999999999999865 45677788999999999999 778889999999999


Q ss_pred             HHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhh
Q 043950          177 SKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTP  254 (458)
Q Consensus       177 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~  254 (458)
                      .+++....  ......++++.++.++.+++..++..+++++++++..++.....+.+.++++.++..+..  +++.++..
T Consensus       252 ~~ls~~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~  329 (529)
T d1jdha_         252 RNLSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP  329 (529)
T ss_dssp             HHHHTTCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             Hhcccccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHH
Confidence            99986542  233447899999999999999999999999999998888777888899999999998853  55678889


Q ss_pred             HHHHHhHhhcCChh---hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc
Q 043950          255 ALWTVGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD  331 (458)
Q Consensus       255 a~~~l~~l~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~  331 (458)
                      +++++.+++.....   ....+...++++.++.++..+.+..++..+++++.|++... +....+.+.|+++.+++++.+
T Consensus       330 a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~-~~~~~l~~~g~i~~L~~lL~~  408 (529)
T d1jdha_         330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVR  408 (529)
T ss_dssp             HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhh-hhhhhhhhcccHHHHHHHHhc
Confidence            99999999875542   34455578999999999988756678889999999998753 566788899999999999965


Q ss_pred             CC----------------------hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHH
Q 043950          332 AE----------------------FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLEN  389 (458)
Q Consensus       332 ~~----------------------~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~  389 (458)
                      .+                      .++...+..++..++.  +...+..+.+.|+++.|++++.++++.++..++++|.+
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~  486 (529)
T d1jdha_         409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE  486 (529)
T ss_dssp             HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            43                      3456667778888875  45667777889999999999999999999999999999


Q ss_pred             HHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950          390 ILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY  445 (458)
Q Consensus       390 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  445 (458)
                      +....+              ....+.+.|++..|.+++++++++++..|..+|.++
T Consensus       487 L~~~~~--------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         487 LAQDKE--------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HTTSHH--------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HhcChh--------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            865422              267888999999999999999999999999998764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-32  Score=264.49  Aligned_cols=407  Identities=16%  Similarity=0.157  Sum_probs=341.6

Q ss_pred             hhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950           21 KLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS   99 (458)
Q Consensus        21 ~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~   99 (458)
                      ..+.++.+++.|.+ +++.++..|+.+|.+++.+  .+....+++.|+++.|+++|++++ ++++..|+++|++++.+++
T Consensus        57 ~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~  133 (529)
T d1jdha_          57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQE  133 (529)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCT
T ss_pred             hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccc
Confidence            34679999999974 6789999999999999654  677889999999999999999988 8999999999999999888


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950          100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l  179 (458)
                      ..+..+.+.|+++.|+.++++++++++..+++++.+++..++..+..+...|+++.++..+.....+.++..+++++.++
T Consensus       134 ~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~l  213 (529)
T d1jdha_         134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  213 (529)
T ss_dssp             THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence            88888889999999999999999999999999999999888888888889999999999997777788999999999999


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHH
Q 043950          180 CKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTV  259 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l  259 (458)
                      +............++++.+..++.+++..++..+++++.+++......   ....|+++.|++++.+++..++..++++|
T Consensus       214 s~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L  290 (529)
T d1jdha_         214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             TTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             hccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHH
Confidence            876544444455889999999999999999999999999998544322   22357899999999999999999999999


Q ss_pred             hHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCC---HHHHHHHHHcCChHHHHHHhccCC-h
Q 043950          260 GNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGN---REQIQAVIDAGLIVPLVNVLQDAE-F  334 (458)
Q Consensus       260 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~---~~~~~~l~~~~~~~~L~~ll~~~~-~  334 (458)
                      ++++..++.....+.+.++++.++..+... ..+.++..+++++.+++...   ......+...+.++.++.++..++ .
T Consensus       291 ~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~  370 (529)
T d1jdha_         291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW  370 (529)
T ss_dssp             HHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred             HhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchH
Confidence            999998888888888999999999988542 25678999999999999632   233445667899999999998654 5


Q ss_pred             hhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCH----------------------HHHHHHHHHHHHHHH
Q 043950          335 DIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDP----------------------KIVTVCLEGLENILK  392 (458)
Q Consensus       335 ~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~----------------------~v~~~~~~~l~~l~~  392 (458)
                      .++..+++++.+++..  ++....+.+.|+++.|++++.+.+.                      +++..+..++..+..
T Consensus       371 ~~~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~  448 (529)
T d1jdha_         371 PLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR  448 (529)
T ss_dssp             HHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc
Confidence            6788999999999874  3556778899999999999875433                      455566666666653


Q ss_pred             hchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCC
Q 043950          393 VGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGR  449 (458)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  449 (458)
                      ...              -+..+.+.|+++.|.+++.+++++++..|..++..+...+
T Consensus       449 ~~~--------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~  491 (529)
T d1jdha_         449 DVH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK  491 (529)
T ss_dssp             SHH--------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred             CHH--------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcCh
Confidence            222              2667788999999999999999999999999998876543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-27  Score=224.69  Aligned_cols=369  Identities=17%  Similarity=0.190  Sum_probs=282.4

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950           66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN  145 (458)
Q Consensus        66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  145 (458)
                      ..+|.|+++|++++ ++++..|+++|++++.++++.+..+.+.|++|.|++++++++++++..|+++|.+++.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999998899999999999999999999999999999999999999988888889


Q ss_pred             HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh----------------cCCChHH
Q 043950          146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLI----------------HLDDEEV  209 (458)
Q Consensus       146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll----------------~~~~~~~  209 (458)
                      .+.+.|+++.++..+....++.++..+++++.+++...... .......++.+...+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            99999999999999987888999999999999999875332 233344444444332                3456889


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC------CccchhhHHHHHhHhh--------------------
Q 043950          210 LSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP------SPSVLTPALWTVGNIV--------------------  263 (458)
Q Consensus       210 ~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------~~~~~~~a~~~l~~l~--------------------  263 (458)
                      +..+++++.+++...+.........|+++.++.++.+.      .......+...+.+..                    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999877666555555678889988887531      1111111111111110                    


Q ss_pred             ------------------------------cCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH--
Q 043950          264 ------------------------------MGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE--  311 (458)
Q Consensus       264 ------------------------------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~--  311 (458)
                                                    .........+...++++.++.++....++.++..+.+++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          001111122223356777888887765778899999999999864321  


Q ss_pred             ---HHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHH
Q 043950          312 ---QIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTV  382 (458)
Q Consensus       312 ---~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~  382 (458)
                         ....+.+.|+++.|+.++.+++++++..+++++++++...  .....+ ..++++.++.++..      .+++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~--~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh--hHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               2233446899999999999999999999999999998753  333443 44678999998863      24578999


Q ss_pred             HHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC-CChHHHHHHHHHHHHhcCCCCCC
Q 043950          383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH-DNNGIREKAVKILETYWCGRVVG  452 (458)
Q Consensus       383 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~~~~~  452 (458)
                      ++.+|.++....+.             .+..+.+.|+++.|.++..+ +++.+++.|..+|.++|..++..
T Consensus       397 a~~~L~~l~~~~~~-------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~  454 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHhcCCHH-------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence            99999999865443             37778899999999999655 57899999999999999887753

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.7e-26  Score=212.40  Aligned_cols=362  Identities=15%  Similarity=0.144  Sum_probs=269.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      ++|.|+++|++++++++..|+++|.+++.++ ++....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            5899999999999999999999999997654 788999999999999999999998 89999999999999988899999


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---------------ccccHH
Q 043950          104 VVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---------------EHAKLS  167 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---------------~~~~~~  167 (458)
                      .+.+.|+++.++.++.+ .++.++..+++++.+++...... ..... ++++.++..+.               ...++.
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHh-cccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999998865 77899999999999999876543 33333 33444444432               344678


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhh-hhhhHHHHHHhhcCCC------hHHHHHHHHHHHHhc-------------------
Q 043950          168 MLRIATWTLSKLCKGKPQPPFDQ-VRPALPALAQLIHLDD------EEVLSDACWTLSYLS-------------------  221 (458)
Q Consensus       168 ~~~~a~~~l~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~------~~~~~~~~~~l~~l~-------------------  221 (458)
                      ++..+++++.+++.......... ..++++.++.++++..      ..........+.+..                   
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            89999999999987653322222 2567777777765321      111111111111100                   


Q ss_pred             -------------------------------cCChhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCChh-
Q 043950          222 -------------------------------YGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGDDF-  268 (458)
Q Consensus       222 -------------------------------~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~-  268 (458)
                                                     .........+...++++.++.++.. .++..+..+.+++.+++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                           0001111122334567777777755 4566778888999998765432 


Q ss_pred             ----hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC------ChhhHH
Q 043950          269 ----QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA------EFDIKK  338 (458)
Q Consensus       269 ----~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~------~~~~~~  338 (458)
                          ....+.+.++++.++.++.++ ++.++..+++++++++.+. +....+ ..++++.++.++...      +.+++.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~-~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-LLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-GGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhCh-hHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHH
Confidence                233445789999999999998 9999999999999998753 344444 446889999998643      457899


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC-CHHHHHHHHHHHHHHHHh
Q 043950          339 EAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV-DPKIVTVCLEGLENILKV  393 (458)
Q Consensus       339 ~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~~~~l~~l~~~  393 (458)
                      .++.+|.+++.. +++..+.+.+.|+++.|+.++.+. ++.+++.|..+|.+++.+
T Consensus       396 ~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            999999999875 457778888999999999998764 678999999999999754

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-19  Score=156.39  Aligned_cols=194  Identities=15%  Similarity=0.125  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHH
Q 043950           81 PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQ  159 (458)
Q Consensus        81 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~  159 (458)
                      .+.+..|+..|.+++. +.+++..+...|+++.++. ++.+++++++..|+++|++++.+++..+..+.+.|+++.++..
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            5788999999999997 6788888999999999886 7888999999999999999999998888889999999999999


Q ss_pred             hcccccHHHHHHHHHHHHHhhcCCCCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHH
Q 043950          160 LNEHAKLSMLRIATWTLSKLCKGKPQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR  238 (458)
Q Consensus       160 l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~  238 (458)
                      +..+.++.++..+++++.+++.+.+... .....++++.++.++++++..++..+++++++++..++.....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9777888999999999999998864333 334588999999999999999999999999999988777888899999999


Q ss_pred             HHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHh
Q 043950          239 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN  275 (458)
Q Consensus       239 ~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  275 (458)
                      .|+.+++++++.++..|+++|++++..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999888877666553

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.1e-19  Score=152.81  Aligned_cols=229  Identities=17%  Similarity=0.116  Sum_probs=187.6

Q ss_pred             CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH-HhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHH
Q 043950          204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE-LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL  282 (458)
Q Consensus       204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l  282 (458)
                      ..+.+.+..++.+|.+++.. .+....+...|+++.++. ++.++++.++..|+++|++++..++.....+.+.|+++.+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            45678889999999999954 445666888999998875 7788899999999999999999888888888899999999


Q ss_pred             HHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHC
Q 043950          283 LALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVRE  362 (458)
Q Consensus       283 ~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~  362 (458)
                      +.++.+..++.++..+++++++++.+++.....+.+.|+++.|+.++.+++..++..++++|.+++.. ++.....+.+.
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99998665889999999999999999988888999999999999999999999999999999999875 44667778899


Q ss_pred             CChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHh--cchHHHHH---hhhcC--CChHHH
Q 043950          363 GCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE--DEGFKKIE---GLKSH--DNNGIR  435 (458)
Q Consensus       363 ~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~---~l~~~--~~~~v~  435 (458)
                      |+++.|+.++++++++++..++++|.++....+..             ...+..  .+....+.   .+...  ...+..
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~-------------~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~  252 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG-------------VRECREPELGLEELLRHRCQLLQQHEEYQEEL  252 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH-------------HHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHH-------------HHHHHHhhhhHHHHHHHHHHhccchHHHHHHH
Confidence            99999999999999999999999999998765443             222222  22222222   22222  234456


Q ss_pred             HHHHHHHHHhcC
Q 043950          436 EKAVKILETYWC  447 (458)
Q Consensus       436 ~~a~~~l~~~~~  447 (458)
                      +.+..+++.+|.
T Consensus       253 ~~~~~ll~~~~~  264 (264)
T d1xqra1         253 EFCEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcC
Confidence            788889988873

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-17  Score=162.10  Aligned_cols=379  Identities=13%  Similarity=0.105  Sum_probs=262.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      +|.+.++++++++.++..|+.++..++.....    .-....++|.+..++.+++ ..+|..++.+|++++...   ...
T Consensus       205 ~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~---~~~  276 (588)
T d1b3ua_         205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAV---GPE  276 (588)
T ss_dssp             HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHH---CHH
T ss_pred             HHHHHHHhcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHHh---hhh
Confidence            34444444445555555555555554432211    1112236777777777777 688888888888876521   112


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-chhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP-GCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                      .....+++.+..++.+.++++|..++..+..++..-. .......-...++.+...+ .+.++.++..+..++..++...
T Consensus       277 ~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~  355 (588)
T d1b3ua_         277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL  355 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH
T ss_pred             hhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc
Confidence            2333568889999999999999999999998885432 2222222234556666666 6778888888887777765421


Q ss_pred             CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhh
Q 043950          184 PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIV  263 (458)
Q Consensus       184 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~  263 (458)
                        ........++|.+..++++++++++..++.++..+...-..  . -....+++.+..++.+.++.+|..++.+++.++
T Consensus       356 --~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~  430 (588)
T d1b3ua_         356 --GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA  430 (588)
T ss_dssp             --CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             --chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence              11234467889999999999999999998888777632211  1 122347888999999999999999999998887


Q ss_pred             cCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHH
Q 043950          264 MGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL  342 (458)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~  342 (458)
                      .....   ..+...+.+.+..++.++ ...+|..|+++++.++.. .++    .....+++.+.+++.+++...|..++.
T Consensus       431 ~~~~~---~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~~  502 (588)
T d1b3ua_         431 GQLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLF  502 (588)
T ss_dssp             HHHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHH
T ss_pred             HHcCh---HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            42111   112234567778888887 889999999999999852 222    123358889999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHH
Q 043950          343 AIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKK  422 (458)
Q Consensus       343 ~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (458)
                      ++..+....+.    .......++.+..+++++.+.||..+++++..+....+...           +..     .....
T Consensus       503 ~l~~l~~~~~~----~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~-----------~~~-----~i~~~  562 (588)
T d1b3ua_         503 CINVLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST-----------LQS-----EVKPI  562 (588)
T ss_dssp             HHHHHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH-----------HHH-----HHHHH
T ss_pred             HHHHHHHHcCh----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh-----------HHH-----HHHHH
Confidence            99998753222    22344589999999999999999999999999976544321           122     23677


Q ss_pred             HHhhhcCCChHHHHHHHHHHHHh
Q 043950          423 IEGLKSHDNNGIREKAVKILETY  445 (458)
Q Consensus       423 l~~l~~~~~~~v~~~a~~~l~~~  445 (458)
                      +..++++++.+|+..|.+.++..
T Consensus       563 l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         563 LEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHH
Confidence            88899999999999999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.6e-16  Score=149.49  Aligned_cols=381  Identities=12%  Similarity=0.074  Sum_probs=278.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .++.+.++++++++.+|..++.++..++..-..    ......+++.+..++++++ +.+|..|+.++..++...+..  
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~--  237 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH--
Confidence            467777788889999999999999999775321    2233467888889888888 799999999999887632221  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                       .....+++.+..++.+++..+|..++.+|++++..-+.   .......++.+...+ .+.+++++..+++.+..++...
T Consensus       238 -~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHH
Confidence             11223578999999999999999999999998743221   122334567777777 7788899999999999998765


Q ss_pred             CCCCh--hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950          184 PQPPF--DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN  261 (458)
Q Consensus       184 ~~~~~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~  261 (458)
                      .....  .....++|.+...+.+.++.++..+..++..++..-..  . .....+++.+...++++++.++..++..++.
T Consensus       313 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch--h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            33322  23477889999999999999999998888877632211  1 1123478899999999999999998888777


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHH
Q 043950          262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEA  340 (458)
Q Consensus       262 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a  340 (458)
                      +......  .. ....+++.+..++.+. ++.+|..++.++..++.. ..+.    ....+.+.+..++.++...+|..|
T Consensus       390 ~~~~~~~--~~-~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A  461 (588)
T d1b3ua_         390 VNEVIGI--RQ-LSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCH--HH-HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHhhcch--hh-hhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHH
Confidence            6542211  11 1234678888999888 999999999999988741 1111    112256677788888899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH
Q 043950          341 ALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF  420 (458)
Q Consensus       341 ~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (458)
                      +.+++.++.....+.    .....++.+..++.+++..+|..++.++..+.......               . .....+
T Consensus       462 ~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~---------------~-~~~~il  521 (588)
T d1b3ua_         462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD---------------I-TTKHML  521 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH---------------H-HHHHTH
T ss_pred             HHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH---------------H-HHHHHH
Confidence            999999986544332    23347888999999999999999999999887654321               1 123357


Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950          421 KKIEGLKSHDNNGIREKAVKILETYWC  447 (458)
Q Consensus       421 ~~l~~l~~~~~~~v~~~a~~~l~~~~~  447 (458)
                      ..+..+.+++.+.|+..+.+.+..++.
T Consensus       522 p~ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         522 PTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            888888899999999888888877654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.4e-13  Score=136.96  Aligned_cols=361  Identities=11%  Similarity=0.111  Sum_probs=225.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      ++.+.+.++++++..|..|+.+|..++.+. .+.....+ ..+++.++..+++++ +.+|..|+|+|+.++.........
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            556667788899999999999999886543 11111111 235788889999988 999999999999987522111111


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-chhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP-GCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                      -.-..+++.++..+.++++.+++.|+++|.+++.... .....+  ...++.++..+ ...+...+..+..++..++...
T Consensus       474 ~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~~  550 (888)
T d1qbkb_         474 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAF-SKYQHKNLLILYDAIGTLADSV  550 (888)
T ss_dssp             HHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhh
Confidence            1224568888998889999999999999999984321 122211  12455566666 4444455555566666655322


Q ss_pred             --CCCChhhhhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCChh----hHHHHHHhCcHHHHH--------HHhC--
Q 043950          184 --PQPPFDQVRPALPALAQLIHL--DDEEVLSDACWTLSYLSYGTND----KIQVVIEAGVCRRLV--------ELLG--  245 (458)
Q Consensus       184 --~~~~~~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~~~i~~L~--------~ll~--  245 (458)
                        ..........+++.+......  .+......++.++..++.....    ....+.+. .+..+.        ....  
T Consensus       551 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         551 GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR-CVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             GGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTT
T ss_pred             hccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhcccc
Confidence              111233445566666655442  2223334455555555422211    11111111 111111        1111  


Q ss_pred             ---CCCccchhhHHHHHhHhhcCChhhHHHHH-hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCC
Q 043950          246 ---HPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL  321 (458)
Q Consensus       246 ---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  321 (458)
                         ..+..+...++.+++.++..-......++ ...+++.+...+++. ++.+|..|..+++.++.+........++ .+
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~  707 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIA-DF  707 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHH-HH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHH-HH
Confidence               12344566677777777654333333333 456788899999888 9999999999999998754444333333 26


Q ss_pred             hHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhchh
Q 043950          322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV--DPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       322 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      ++.+...+.++...++.+|+|+++.++.....+...++-  .+++.|+..++++  +..++.+++.+++++....+.
T Consensus       708 ~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         708 MPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHH
Confidence            778888888888899999999999998765434333322  3577788888764  356889999999999876554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.2e-12  Score=133.17  Aligned_cols=408  Identities=11%  Similarity=0.077  Sum_probs=264.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      +..+++.+++.|+++|+.|+.-|.+.+..+....... ....+++.|+++|.+++ +++|..|+.+|+.++...++... 
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~-~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~-   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDD-SERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV-   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTT-HHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH-
Confidence            6678888999999999999999998876542111111 12247899999999998 99999999999999885443321 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh-----hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950          105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR-----NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l  179 (458)
                         ..+++.|+..+.+++...+..+..+|..+...-+...     ........++.+...+....+..++..++.++..+
T Consensus        82 ---~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          82 ---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             ---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence               1347888888888888888888888877653221110     00011123444455554566778889999999988


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHH
Q 043950          180 CKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWT  258 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~  258 (458)
                      ....+.........+++.+...+.+.++.++..++.+++.++...+..   . -..+++.++..+. +.+...+..++.+
T Consensus       159 ~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~~~  234 (1207)
T d1u6gc_         159 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQC  234 (1207)
T ss_dssp             HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred             HHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence            776554444556778888999999999999999999999998654321   1 1235566665553 4567788889999


Q ss_pred             HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH----HHHHHHHHc---------------
Q 043950          259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR----EQIQAVIDA---------------  319 (458)
Q Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~----~~~~~l~~~---------------  319 (458)
                      ++.++...+...... -..+++.+...+..+ ++++|..+..++..++...+    .+...++..               
T Consensus       235 l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~  312 (1207)
T d1u6gc_         235 IAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD  312 (1207)
T ss_dssp             HHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------
T ss_pred             HHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhh
Confidence            999987555432221 146789999999988 88999999999988875322    222222110               


Q ss_pred             -----------------CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHH
Q 043950          320 -----------------GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV  382 (458)
Q Consensus       320 -----------------~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~  382 (458)
                                       ...+.......+....+|..++.+|..++.... +.... .-..+++.+...+.+.++.++..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~-~~~~~~~~L~~~l~d~~~~vr~~  390 (1207)
T d1u6gc_         313 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPE-FYKTVSPALISRFKEREENVKAD  390 (1207)
T ss_dssp             -----------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHH-HHTTTHHHHHSTTSCSSSHHHHH
T ss_pred             HHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHH-HHHHHHHHHHHHhcCCchHHHHH
Confidence                             000011111223356789999999999987543 22222 23457899999999999999999


Q ss_pred             HHHHHHHHHHhchhhcccCCC---CCchhHHHHHHH--hcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          383 CLEGLENILKVGEAEKNTGST---IGDVNQYARLVE--EDEGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       383 ~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      ++.++..++............   ..........+.  -...++.+.....+.++.++..+..++..+.
T Consensus       391 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~  459 (1207)
T d1u6gc_         391 VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV  459 (1207)
T ss_dssp             HHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            999998887654322110000   000000011111  1234566667778888888888887776654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.3e-12  Score=128.10  Aligned_cols=382  Identities=13%  Similarity=0.106  Sum_probs=236.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 043950           37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK  116 (458)
Q Consensus        37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  116 (458)
                      ..++..|..+|..++...+.+....     +++.+.+.+.+++ ...|+.|+.+++.++.+..+.....+. .+++.++.
T Consensus       371 ~~~r~~a~~~L~~l~~~~~~~il~~-----~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~  443 (888)
T d1qbkb_         371 WNLRKCSAAALDVLANVYRDELLPH-----ILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQ  443 (888)
T ss_dssp             CSSHHHHHHHSTTTTTTCCSSSHHH-----HHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHhhHhhhhHHHHHHH-----HHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHH
Confidence            3466777777766654432222211     3556666777787 799999999999999865443222221 35788889


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhH
Q 043950          117 LLASPSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPAL  195 (458)
Q Consensus       117 ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l  195 (458)
                      .++++++.+|..++|+|+.++... +...+. .-...++.++..+ .+.++.++..+++++.+++.............++
T Consensus       444 ~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il  521 (888)
T d1qbkb_         444 CLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYIL  521 (888)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            999999999999999999987422 111111 1234677788888 6778899999999999998765444555668888


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhccCChhh--HHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhh--
Q 043950          196 PALAQLIHLDDEEVLSDACWTLSYLSYGTNDK--IQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQ--  269 (458)
Q Consensus       196 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~--  269 (458)
                      +.+...+...+...+..+..+++.++......  ...+. ..+++.+......  .+.......+.+++.++......  
T Consensus       522 ~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~  600 (888)
T d1qbkb_         522 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL  600 (888)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHh
Confidence            88888888877777777777777665321111  01111 1244555555443  23334445666676665432221  


Q ss_pred             --HHHHHhcCChHHHHHHh--------c----cCChhhHHHHHHHHHHHhhcCCHHHHHHH-HHcCChHHHHHHhccCCh
Q 043950          270 --TQCIINHGAVPCLLALL--------I----HNHKKSIKKVACWTISNITAGNREQIQAV-IDAGLIVPLVNVLQDAEF  334 (458)
Q Consensus       270 --~~~~~~~~~~~~l~~ll--------~----~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~~~~~~L~~ll~~~~~  334 (458)
                        ...+.+ .++..+...+        .    ...+..+...+..+++.++.........+ ....+++.+...+++.+.
T Consensus       601 ~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~  679 (888)
T d1qbkb_         601 PYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP  679 (888)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSH
T ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCCh
Confidence              111111 1111111111        1    11144566666777777764211222333 345678888899999999


Q ss_pred             hhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHH
Q 043950          335 DIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLV  414 (458)
Q Consensus       335 ~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  414 (458)
                      +++..|..+++.++.........++-  .+++.+...++++...++..++++++.++......         ..+|...+
T Consensus       680 ~vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~---------~~py~~~i  748 (888)
T d1qbkb_         680 EVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE---------MQPYIPMV  748 (888)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG---------GGGGSHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHH
Confidence            99999999999987654433323322  25677788888888899999999999998765432         22344443


Q ss_pred             HhcchHHHHHhhhcCCC--hHHHHHHHHHHHHh
Q 043950          415 EEDEGFKKIEGLKSHDN--NGIREKAVKILETY  445 (458)
Q Consensus       415 ~~~~~~~~l~~l~~~~~--~~v~~~a~~~l~~~  445 (458)
                           ++.|..+.++++  ..+.+.+...+.++
T Consensus       749 -----l~~L~~il~~~~~~~~v~~n~~~~lgrl  776 (888)
T d1qbkb_         749 -----LHQLVEIINRPNTPKTLLENTAITIGRL  776 (888)
T ss_dssp             -----HHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence                 566666665543  44766666666544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=2.4e-11  Score=105.02  Aligned_cols=257  Identities=13%  Similarity=0.118  Sum_probs=195.0

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch
Q 043950           64 QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC  143 (458)
Q Consensus        64 ~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  143 (458)
                      +....+.|+++|++++ +.+|..|+.+|+.+..  +         ..++.|+.+++++++.+|..|+.+|+.+.......
T Consensus        17 ~~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~   84 (276)
T d1oyza_          17 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE   84 (276)
T ss_dssp             HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred             ccCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence            3456788999999999 9999999999998864  2         34799999999999999999999999986443221


Q ss_pred             hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 043950          144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG  223 (458)
Q Consensus       144 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~  223 (458)
                       .     ..++.++..+.+++++.++..++.++..++...+    ......++.+...+.+.++.++..++.+++.+.. 
T Consensus        85 -~-----~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          85 -D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             -H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             -c-----chHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-
Confidence             1     1345666666688899999999999999886532    2335677888888889999999988888876531 


Q ss_pred             ChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHH
Q 043950          224 TNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTIS  303 (458)
Q Consensus       224 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~  303 (458)
                                ...++.+..++...+..++..+..+++........         ..+.+...+... +..++..+.++++
T Consensus       154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~  213 (276)
T d1oyza_         154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLS  213 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccc
Confidence                      24567788888888888888888888777654432         344566777777 8889999999988


Q ss_pred             HhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CCHHHHHH
Q 043950          304 NITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC-VDPKIVTV  382 (458)
Q Consensus       304 nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~  382 (458)
                      .+..           ..+++.|++.+.+  +.++..++++|+.+..            .+.++.|..++.. ++.+++..
T Consensus       214 ~~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~  268 (276)
T d1oyza_         214 YRKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITS  268 (276)
T ss_dssp             HTTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHH
T ss_pred             hhhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHH
Confidence            7642           2367888888874  5688999999998842            2356777777765 56789998


Q ss_pred             HHHHHH
Q 043950          383 CLEGLE  388 (458)
Q Consensus       383 ~~~~l~  388 (458)
                      +++.|.
T Consensus       269 A~~~L~  274 (276)
T d1oyza_         269 AIDKLK  274 (276)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            888774

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=2.7e-10  Score=98.23  Aligned_cols=253  Identities=14%  Similarity=0.115  Sum_probs=187.8

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      ..+.|+++|+++++.++..|+..|..+..            ...++.|++++++++ +.++..|+.+|+.+... .....
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~-~~~~~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKCED   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTTHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-ccccc
Confidence            46789999999999999999999988721            135799999999998 89999999999998763 22222


Q ss_pred             HHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950          104 VVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG  182 (458)
Q Consensus       104 ~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~  182 (458)
                      ..     ++.+. .+++++++.++..++.+|++++...+....     ..++.+...+ .+.++.++..++.++..... 
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence            21     23333 356779999999999999999765443222     2355556555 67788888888888776532 


Q ss_pred             CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950          183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI  262 (458)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l  262 (458)
                               ...++.+..++...+..++..+..++.........         ..+.+...+.+.+..++..+..+++.+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence                     34567788888899999998888888877644432         345567778888888999999888766


Q ss_pred             hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHH
Q 043950          263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAA  341 (458)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~  341 (458)
                      ..           ...++.++..+.++   .+|..++++|+.+.  +         .+.++.|..++... +.+++..|+
T Consensus       216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~---------~~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELG--D---------KTLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--C---------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--C---------HHHHHHHHHHHccCCCHHHHHHHH
Confidence            32           34678888888754   58999999999884  2         24788898888764 788999988


Q ss_pred             HHHH
Q 043950          342 LAIA  345 (458)
Q Consensus       342 ~~L~  345 (458)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.8e-11  Score=110.40  Aligned_cols=364  Identities=12%  Similarity=0.041  Sum_probs=228.6

Q ss_pred             hccHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCccHHHH----------HHcCCHHHHHHhhcCCCCHHHHHHHHH
Q 043950           22 LEILPAMVAGVWSD--DNSLQLEATTQFRILLSIERSPRIEDV----------IQAGVVPRFVEFLMREDYPQLQYEAAW   89 (458)
Q Consensus        22 ~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~----------~~~~~i~~L~~ll~~~~~~~i~~~a~~   89 (458)
                      .+.+..+.+.+.++  +..+|..|+..|.+.............          ....+.+.+++.+.+++ +. +..++.
T Consensus        33 ~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~  110 (458)
T d1ibrb_          33 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQ  110 (458)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHH
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHH
Confidence            34566677777643  477888999999988765421111111          12235556777776665 33 333445


Q ss_pred             HHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc-cccH
Q 043950           90 ALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE-HAKL  166 (458)
Q Consensus        90 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~  166 (458)
                      ++..++... ...  -.-.+.++.+...+.+  .+...+..++.++..++.........-.....++.++..+.. +.+.
T Consensus       111 ~~~~i~~~~-~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~  187 (458)
T d1ibrb_         111 CVAGIACAE-IPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN  187 (458)
T ss_dssp             HHHHHHHHH-GGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCH
T ss_pred             HHHHHHHHh-CCc--ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCH
Confidence            555544310 000  0012557788887765  557788889999998875433211111112346666767743 3467


Q ss_pred             HHHHHHHHHHHHhhcCCC--CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh
Q 043950          167 SMLRIATWTLSKLCKGKP--QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL  244 (458)
Q Consensus       167 ~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll  244 (458)
                      .++..++.++.++.....  ...........+.+...+.+++++++..++.++..++..........+.......+....
T Consensus       188 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~  267 (458)
T d1ibrb_         188 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  267 (458)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999886542  122233355677788888999999999999999999865544333233334455666777


Q ss_pred             CCCCccchhhHHHHHhHhhcCChhhHHHH--------------------HhcCChHHHHHHhccC------ChhhHHHHH
Q 043950          245 GHPSPSVLTPALWTVGNIVMGDDFQTQCI--------------------INHGAVPCLLALLIHN------HKKSIKKVA  298 (458)
Q Consensus       245 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--------------------~~~~~~~~l~~ll~~~------~~~~v~~~a  298 (458)
                      .+.++.++..++.++..++..........                    ....+.+.+...+...      .+..++..+
T Consensus       268 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a  347 (458)
T d1ibrb_         268 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  347 (458)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHH
Confidence            77888888899988888764221111000                    0112334444444321      134688888


Q ss_pred             HHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCH
Q 043950          299 CWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDP  377 (458)
Q Consensus       299 ~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  377 (458)
                      ..++..++.. ..+...     .+++.+...++++++.+|..|+.+|+.++.....+..... -..+++.+...++++++
T Consensus       348 ~~~l~~l~~~~~~~~~~-----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~  421 (458)
T d1ibrb_         348 GVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSV  421 (458)
T ss_dssp             HHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCH
T ss_pred             HHHHHHHHHhccHhhhh-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCH
Confidence            8888888752 212222     2566777888889999999999999999875432222111 13468889999999999


Q ss_pred             HHHHHHHHHHHHHHHhchh
Q 043950          378 KIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       378 ~v~~~~~~~l~~l~~~~~~  396 (458)
                      .||..|+++|+++.+...+
T Consensus       422 ~VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         422 VVRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999886554

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.4e-10  Score=105.08  Aligned_cols=388  Identities=11%  Similarity=0.050  Sum_probs=245.3

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950           27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED-YPQLQYEAAWALTNIASGTSMNTNVV  105 (458)
Q Consensus        27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~  105 (458)
                      .+++.+.++|.+.+..|-..|..+...+   .      .+++..|..++.+++ ...+|..|+..|.+............
T Consensus         4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~---~------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~   74 (458)
T d1ibrb_           4 TILEKTVSPDRLELEAAQKFLERAAVEN---L------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   74 (458)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHH---H------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcC---c------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence            4556667899999999999999885531   0      135677777776543 36789889888888776433221111


Q ss_pred             -----------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc-cccHHHHHHHH
Q 043950          106 -----------IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE-HAKLSMLRIAT  173 (458)
Q Consensus       106 -----------~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~  173 (458)
                                 ....+.+.++..+.++++. +..++.+++.++...... .  .-.+.++.++..+.+ ..++..+..++
T Consensus        75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~--~~~~~~~~l~~~l~~~~~~~~~~~~~l  150 (458)
T d1ibrb_          75 YQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV-N--QWPELIPQLVANVTNPNSTEHMKESTL  150 (458)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc-c--cCcchhHHHHHHHHhhcchHHHHHHHH
Confidence                       1112345566766665443 333445555554221100 0  012457777777743 34556777888


Q ss_pred             HHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChhhH-HHHHHhCcHHHHHHHhCCCCc
Q 043950          174 WTLSKLCKGK-PQPPFDQVRPALPALAQLIHLD--DEEVLSDACWTLSYLSYGTNDKI-QVVIEAGVCRRLVELLGHPSP  249 (458)
Q Consensus       174 ~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~  249 (458)
                      .++..++... +.........+++.+...+.+.  +..++..++.++..+........ .......+.+.+...+.++++
T Consensus       151 ~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  230 (458)
T d1ibrb_         151 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT  230 (458)
T ss_dssp             HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCH
Confidence            8888887654 2333344577788888888764  46789999999998885543221 112233467778888888999


Q ss_pred             cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH-------------
Q 043950          250 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV-------------  316 (458)
Q Consensus       250 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-------------  316 (458)
                      +++..++.++..++...+......+.....+.+.....+. +..++..++..+..++..........             
T Consensus       231 ~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
T d1ibrb_         231 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT  309 (458)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHH
Confidence            9999999999999876655443333333444455666666 88899999998888864211111000             


Q ss_pred             -------HHcCChHHHHHHhcc-------CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHH
Q 043950          317 -------IDAGLIVPLVNVLQD-------AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV  382 (458)
Q Consensus       317 -------~~~~~~~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~  382 (458)
                             ....+++.+...+..       .+..++..+..++..++..........     +++.+...++++++.++..
T Consensus       310 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~a  384 (458)
T d1ibrb_         310 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDA  384 (458)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHHH
Confidence                   011123444444432       234578888888888876544333333     4667778888999999999


Q ss_pred             HHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       383 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      ++.+++.+........        ..++.     ...++.|....+++++.|+..|.+.+.++.
T Consensus       385 al~~l~~i~~~~~~~~--------~~~~l-----~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         385 AVMAFGCILEGPEPSQ--------LKPLV-----IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HHHHHHHTSSSSCTTT--------TCTTT-----TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHhH--------HHHHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999988875322111        00111     224677788889999999999999998874

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=7.2e-09  Score=103.93  Aligned_cols=356  Identities=12%  Similarity=0.065  Sum_probs=225.1

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950           27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED-YPQLQYEAAWALTNIASGTSMNTNVV  105 (458)
Q Consensus        27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~  105 (458)
                      .|.+.+.++|+.+|..|-..|.++...+  .       .+++..|.+.+.+.+ ...+|..|+..|.|............
T Consensus         9 ~L~~~~~s~d~~~r~~Ae~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~   79 (861)
T d2bpta1           9 LLENSILSPDQNIRLTSETQLKKLSNDN--F-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ   79 (861)
T ss_dssp             HHHHHHHCSSHHHHHHHHHHHHHHHHHC--H-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence            3444567899999999999998875432  1       135677888886643 36788889988888766432221110


Q ss_pred             --------H----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950          106 --------I----DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT  173 (458)
Q Consensus       106 --------~----~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~  173 (458)
                              +    ...+-..++..+.++++.+|..++.+++.++...-... ..  ...++.++..+..+.+...+..++
T Consensus        80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~-~w--peli~~L~~~~~s~~~~~~~~~al  156 (861)
T d2bpta1          80 FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG-AW--PELMKIMVDNTGAEQPENVKRASL  156 (861)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT-CC--HHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred             HHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC-ch--HHHHHHHHHHhcCCCcHHHHHHHH
Confidence                    0    01223567777888899999999999999874321100 00  124566777775555667788889


Q ss_pred             HHHHHhhcCCCCCCh---hhhhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCChhhHH-HHHHhCcHHHHHHHhCCC
Q 043950          174 WTLSKLCKGKPQPPF---DQVRPALPALAQLIHL--DDEEVLSDACWTLSYLSYGTNDKIQ-VVIEAGVCRRLVELLGHP  247 (458)
Q Consensus       174 ~~l~~l~~~~~~~~~---~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~  247 (458)
                      .++..++........   ......++.+...+.+  .+..++..++.++.++...-..... ......+++.+...+.++
T Consensus       157 ~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  236 (861)
T d2bpta1         157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE  236 (861)
T ss_dssp             HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC
Confidence            999999876532222   2234555555555543  4578899999999988755432221 122234677888889999


Q ss_pred             CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH---------------
Q 043950          248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ---------------  312 (458)
Q Consensus       248 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~---------------  312 (458)
                      ++.++..++.++..++...+......+..-+...+.....+. ++.++..+...+..++......               
T Consensus       237 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  315 (861)
T d2bpta1         237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSY  315 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            999999999999999875554433333222223333444445 7778877776666554210000               


Q ss_pred             ------HHHHH------------------------------------HcCChHHHH----HHhccCChhhHHHHHHHHHH
Q 043950          313 ------IQAVI------------------------------------DAGLIVPLV----NVLQDAEFDIKKEAALAIAN  346 (458)
Q Consensus       313 ------~~~l~------------------------------------~~~~~~~L~----~ll~~~~~~~~~~a~~~L~~  346 (458)
                            ...+.                                    ...+++.+.    ..+.+.+...+..+..+++.
T Consensus       316 ~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~  395 (861)
T d2bpta1         316 NFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGS  395 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHH
Confidence                  00000                                    011222222    23345567788888888988


Q ss_pred             hhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950          347 ATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA  396 (458)
Q Consensus       347 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~  396 (458)
                      +.............+ .+++.+...+.++++.++..++++++++......
T Consensus       396 i~~~~~~~~~~~~l~-~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  444 (861)
T d2bpta1         396 IMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAE  444 (861)
T ss_dssp             TSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHhhcchhhHHHHHH-HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch
Confidence            887766554443332 3678889999999999999999999999886554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.2e-10  Score=115.95  Aligned_cols=396  Identities=11%  Similarity=0.089  Sum_probs=241.6

Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---
Q 043950           22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT---   98 (458)
Q Consensus        22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~---   98 (458)
                      ...++.+++.|...++++|..|+.+|..++..-++....     .+++.|+..+.+++ ...+..+..+|..+...-   
T Consensus        44 ~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~-----~l~~~L~~~l~~~~-~~~r~~~~~~L~~i~~~l~~~  117 (1207)
T d1u6gc_          44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPA  117 (1207)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHH-----HHHHHHHHHhcCCc-hhhhHHHHHHHHHHHHhcccc
Confidence            346889999999999999999999999987764222221     24555665555554 345554444443321100   


Q ss_pred             ---------------------------hhhHHH-------HH-h---------CCChHHHHHhhCCCCHHHHHHHHHHHH
Q 043950           99 ---------------------------SMNTNV-------VI-D---------HGAVPIFVKLLASPSDDVREQAVWALG  134 (458)
Q Consensus        99 ---------------------------~~~~~~-------~~-~---------~~~i~~L~~ll~~~~~~~~~~a~~~L~  134 (458)
                                                 ...+..       ++ .         ..+++.++..+.+++..+|..|+.+|+
T Consensus       118 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~  197 (1207)
T d1u6gc_         118 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALG  197 (1207)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                                       000000       00 0         123455666677888999999999999


Q ss_pred             HhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHH
Q 043950          135 NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDAC  214 (458)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~  214 (458)
                      .++...+..  .  -...+..++..+..+.+...++.++.++..+++..+..-......++|.+...+.+.+.++++.++
T Consensus       198 ~l~~~~~~~--~--~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al  273 (1207)
T d1u6gc_         198 HLVMSCGNI--V--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCI  273 (1207)
T ss_dssp             HHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred             HHHHHCCHH--H--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence            998654331  1  123567777777666666667778888888887654433344578899999999999999999999


Q ss_pred             HHHHHhccCChhhHHHHHHhCcHHHHHHH-------------------------------------hCCCCccchhhHHH
Q 043950          215 WTLSYLSYGTNDKIQVVIEAGVCRRLVEL-------------------------------------LGHPSPSVLTPALW  257 (458)
Q Consensus       215 ~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-------------------------------------l~~~~~~~~~~a~~  257 (458)
                      .++..++...+....... ..+++.+.+.                                     ..+..+.+|..++.
T Consensus       274 ~~l~~l~~~~~~~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~  352 (1207)
T d1u6gc_         274 QAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK  352 (1207)
T ss_dssp             HHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHH
T ss_pred             HHHHHHHHhChhhhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHH
Confidence            998888754432211111 1112222211                                     12234578899999


Q ss_pred             HHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC---CHHH-------------HHHHH--Hc
Q 043950          258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG---NREQ-------------IQAVI--DA  319 (458)
Q Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~-------------~~~l~--~~  319 (458)
                      ++..+....++...... ..+++.++..+... ++.+|..+..++..+...   ....             ...+.  -.
T Consensus       353 ~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  430 (1207)
T d1u6gc_         353 CLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP  430 (1207)
T ss_dssp             HHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTT
T ss_pred             HHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhH
Confidence            99999877666555444 46899999999888 889999999888887631   0000             00111  12


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhchhh
Q 043950          320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKVGEAE  397 (458)
Q Consensus       320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~~~~~  397 (458)
                      .+++.+...+.+.+..++..+..++..+..........++.  ..++.+...+..  ....++..++..+..++......
T Consensus       431 ~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~  508 (1207)
T d1u6gc_         431 NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ  508 (1207)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--hhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHH
Confidence            35666777778889999999999998886532211111111  134555555553  34567778888888887754432


Q ss_pred             cccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950          398 KNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY  445 (458)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  445 (458)
                      .           +...+  ......+.....++.+++...+...+..+
T Consensus       509 ~-----------~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~l  543 (1207)
T d1u6gc_         509 V-----------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQL  543 (1207)
T ss_dssp             G-----------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             H-----------HHHHH--HhhhhhHHHHHccccHHHHHHHHHHHHHH
Confidence            1           11111  12244455555666666666555554443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=1.3e-09  Score=109.62  Aligned_cols=354  Identities=13%  Similarity=0.143  Sum_probs=212.0

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 043950           28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVID  107 (458)
Q Consensus        28 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  107 (458)
                      +...+.+++...+..++.++..++... ......-.-..+++.++..+.+++ +.++..++++++.++.....   .+..
T Consensus       374 ~~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~  448 (861)
T d2bpta1         374 VEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAE---SIDP  448 (861)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGG---GSCT
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhch---hhhh
Confidence            344556788999999999999886654 222222222347889999999998 89999999999998762111   1111


Q ss_pred             CCChHHHHHhhC---CCCHHHHHHHHHHHHHhhcCC----Cc-hhhHHhhhCCHHHHHHHhc-ccccHHHHHHHHHHHHH
Q 043950          108 HGAVPIFVKLLA---SPSDDVREQAVWALGNVAADS----PG-CRNLVLREEALIPLLAQLN-EHAKLSMLRIATWTLSK  178 (458)
Q Consensus       108 ~~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~----~~-~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~l~~  178 (458)
                      ...++.++..+.   ..++.++..+++++..++...    .. .....  ...+..++.... ...+..++..+..++..
T Consensus       449 ~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~  526 (861)
T d2bpta1         449 QQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTT  526 (861)
T ss_dssp             TTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHH--hhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            233344333321   356778888888888776321    11 11111  123444454443 23456688888888888


Q ss_pred             hhcCCCCCChhhhhhhHHHHHHhh----cCCC-----------hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH
Q 043950          179 LCKGKPQPPFDQVRPALPALAQLI----HLDD-----------EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL  243 (458)
Q Consensus       179 l~~~~~~~~~~~~~~~l~~l~~ll----~~~~-----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l  243 (458)
                      +....+.........+.+.+...+    ....           ..++..++.++..+............ ..+++.+...
T Consensus       527 ~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~  605 (861)
T d2bpta1         527 MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRL  605 (861)
T ss_dssp             HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhh
Confidence            876654433333344444433333    2111           12334444455544432222211111 2356667777


Q ss_pred             hCC-CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCCh
Q 043950          244 LGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI  322 (458)
Q Consensus       244 l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~  322 (458)
                      +.. ++..++..++.+++.++..........+ ..+++.+...+.+. ++.++..|+.+++.++...++....... .++
T Consensus       606 l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l-~~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i~  682 (861)
T d2bpta1         606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AMM  682 (861)
T ss_dssp             HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HHH
T ss_pred             cccCCchhHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HHH
Confidence            755 4566888999999998875554444433 25788999999988 8899999999999998644333333332 367


Q ss_pred             HHHHHHhccC--ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC----C-------HHHHHHHHHHHHH
Q 043950          323 VPLVNVLQDA--EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV----D-------PKIVTVCLEGLEN  389 (458)
Q Consensus       323 ~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~----~-------~~v~~~~~~~l~~  389 (458)
                      +.|++.+.++  +..++..++.+++.++......+..++-+  +++.+...+...    +       .++++.++.++..
T Consensus       683 ~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  760 (861)
T d2bpta1         683 NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVG  760 (861)
T ss_dssp             HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            7888888765  56789999999999976433333333222  344444444321    1       2467778888777


Q ss_pred             HHHhc
Q 043950          390 ILKVG  394 (458)
Q Consensus       390 l~~~~  394 (458)
                      ++...
T Consensus       761 i~~~~  765 (861)
T d2bpta1         761 IVAGL  765 (861)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            76543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.8e-08  Score=101.35  Aligned_cols=402  Identities=11%  Similarity=0.026  Sum_probs=247.6

Q ss_pred             hccHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCccHH----------HHHHcCCHHHHHHhhcCCCCHHHHHHHHH
Q 043950           22 LEILPAMVAGVWSD--DNSLQLEATTQFRILLSIERSPRIE----------DVIQAGVVPRFVEFLMREDYPQLQYEAAW   89 (458)
Q Consensus        22 ~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~----------~~~~~~~i~~L~~ll~~~~~~~i~~~a~~   89 (458)
                      .+-+..|.+.+.++  +..+|..|+..|.+...........          .-....+...+++.+.+++  .++..++.
T Consensus        34 ~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~  111 (876)
T d1qgra_          34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQ  111 (876)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHH
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHH
Confidence            35566677777543  4789999999999987643111110          0112335567788887765  34556777


Q ss_pred             HHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc-cccH
Q 043950           90 ALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE-HAKL  166 (458)
Q Consensus        90 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~  166 (458)
                      +++.++..  +.... .=.+.++.|.+.+.+  .+..++..++.+|..++..-......-.....++.++..+.. +.+.
T Consensus       112 ~i~~i~~~--~~p~~-~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~  188 (876)
T d1qgra_         112 CVAGIACA--EIPVN-QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN  188 (876)
T ss_dssp             HHHHHHHH--HGGGT-CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCH
T ss_pred             HHHHHHHH--HCCcc-ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccH
Confidence            88877652  11000 002567888888765  447789999999999975432111111112356667777743 3456


Q ss_pred             HHHHHHHHHHHHhhcCCC--CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh
Q 043950          167 SMLRIATWTLSKLCKGKP--QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL  244 (458)
Q Consensus       167 ~~~~~a~~~l~~l~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll  244 (458)
                      +++..++.++.+......  .........+++.+...+.+++++++..++.++..++....+.........+...+....
T Consensus       189 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  268 (876)
T d1qgra_         189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  268 (876)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            788888888887765431  111222244667777888899999999999999999876655555455556677777888


Q ss_pred             CCCCccchhhHHHHHhHhhcCChhhHHH--------------------HHhcCChHHHHHHhccC------ChhhHHHHH
Q 043950          245 GHPSPSVLTPALWTVGNIVMGDDFQTQC--------------------IINHGAVPCLLALLIHN------HKKSIKKVA  298 (458)
Q Consensus       245 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~--------------------~~~~~~~~~l~~ll~~~------~~~~v~~~a  298 (458)
                      .+..+.++..++..+..++.........                    .....+++.+...+...      .+..++..|
T Consensus       269 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a  348 (876)
T d1qgra_         269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHH
Confidence            8888888888888877776422211110                    00112333444444321      133577888


Q ss_pred             HHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHH
Q 043950          299 CWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK  378 (458)
Q Consensus       299 ~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  378 (458)
                      ..++..++...+..   ++. .+++.+...+.+.+...+..++.+++.+............. ...++.+...+.++++.
T Consensus       349 ~~~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~  423 (876)
T d1qgra_         349 GVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV  423 (876)
T ss_dssp             HHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHhhhh---hhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccH
Confidence            88887776421111   111 13455666667788999999999999998776655444322 23678888899999999


Q ss_pred             HHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950          379 IVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW  446 (458)
Q Consensus       379 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  446 (458)
                      ++..+++++.++++........       ..+...+     +..+.... ++++.++..+.+.+..+.
T Consensus       424 vr~~a~~~l~~~~~~~~~~~~~-------~~~~~~~-----~~~l~~~l-~~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         424 VRDTAAWTVGRICELLPEAAIN-------DVYLAPL-----LQCLIEGL-SAEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTSS-------TTTHHHH-----HHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcchhhhh-------HHHhhhH-----HHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            9999999999999875543210       0111111     33334333 346788888777776553

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.1e-08  Score=98.62  Aligned_cols=317  Identities=15%  Similarity=0.162  Sum_probs=190.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV  104 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  104 (458)
                      ++.+.+.+.+++...+..++..+..+.... ......-.-..+++.++..+.+++ +.++..++++++.++...+...  
T Consensus       368 ~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~--  443 (876)
T d1qgra_         368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGP-EPSQLKPLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAA--  443 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGT--
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHHHHcchhh--
Confidence            444556667888999999988888876553 222222223357889999999988 8999999999999886332211  


Q ss_pred             HHhCC----ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch-----------hhHHh--hhCCHHHHHHHhcc--ccc
Q 043950          105 VIDHG----AVPIFVKLLASPSDDVREQAVWALGNVAADSPGC-----------RNLVL--REEALIPLLAQLNE--HAK  165 (458)
Q Consensus       105 ~~~~~----~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----------~~~~~--~~~~l~~l~~~l~~--~~~  165 (458)
                       ....    .++.+...+. .++.++..+++++.+++......           ...+.  ....+..++..+..  ...
T Consensus       444 -~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~  521 (876)
T d1qgra_         444 -INDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQ  521 (876)
T ss_dssp             -SSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCS
T ss_pred             -hhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence             1112    2455555554 56889999999999887421000           00000  01124445555532  234


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHh----hcCC------C-----hHHHHHHHHHHHHhccCChhhHHH
Q 043950          166 LSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQL----IHLD------D-----EEVLSDACWTLSYLSYGTNDKIQV  230 (458)
Q Consensus       166 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~l----l~~~------~-----~~~~~~~~~~l~~l~~~~~~~~~~  230 (458)
                      ..++..+..++..+...............++.+...    +...      .     ...+...+.++..+..........
T Consensus       522 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  601 (876)
T d1qgra_         522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL  601 (876)
T ss_dssp             TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence            557778888888877765544444444444444333    3211      1     123344455555555433222111


Q ss_pred             HHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC
Q 043950          231 VIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG  308 (458)
Q Consensus       231 ~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  308 (458)
                      -....+++.+..++..  ++..++..++.+++.++...++.....+ ..+++.+...+++..++.++..|+.+++.++..
T Consensus       602 ~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l-~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~  680 (876)
T d1qgra_         602 QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA  680 (876)
T ss_dssp             TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            1223466777777765  4566888899999888764433322222 246788888887775678999999999988763


Q ss_pred             CHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhhc
Q 043950          309 NREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATV  349 (458)
Q Consensus       309 ~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~  349 (458)
                      .+.......+ .+++.++..++++  +..++..++++++.++.
T Consensus       681 ~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~  722 (876)
T d1qgra_         681 LQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             HGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred             hHHhhhhhHH-HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence            3233333222 3677888888765  46789999999988864

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=5.4e-07  Score=80.07  Aligned_cols=320  Identities=11%  Similarity=0.133  Sum_probs=200.1

Q ss_pred             CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhH---Hhh-hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950          109 GAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNL---VLR-EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK  183 (458)
Q Consensus       109 ~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~-~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~  183 (458)
                      .++..+++++.. ..+++.+.++..+..+..+++.....   ..+ ...+..++..+....+.-....++..+..++...
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            357788888875 77888888888888887766543221   111 1122233333324555566666777777776654


Q ss_pred             CCCCh--hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH--HhCcHHHHHHHhCC----C--------
Q 043950          184 PQPPF--DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI--EAGVCRRLVELLGH----P--------  247 (458)
Q Consensus       184 ~~~~~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~i~~L~~ll~~----~--------  247 (458)
                      .....  .........+..+....+.+....++.++..+......+ ..+.  +...++.++.++..    .        
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R-~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~  232 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  232 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHH-HHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence            22211  111222333444556778888888888888888665533 3232  22344444444422    1        


Q ss_pred             -----CccchhhHHHHHhHhhcCChhhHHHHHhc--CChHHHHHHhccCChhhHHHHHHHHHHHhhcC----CHH-HHHH
Q 043950          248 -----SPSVLTPALWTVGNIVMGDDFQTQCIINH--GAVPCLLALLIHNHKKSIKKVACWTISNITAG----NRE-QIQA  315 (458)
Q Consensus       248 -----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~----~~~-~~~~  315 (458)
                           ...+...++.+++-++. ++.....+.+.  +.++.++.+++.....++.+.++.++.|++..    .+. ....
T Consensus       233 ~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~  311 (477)
T d1ho8a_         233 NSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL  311 (477)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence                 12467778889988875 55566666654  45888999998776889999999999999863    111 2233


Q ss_pred             HHHcCChHHHHHHhccC---ChhhHHHHHHHHHHhhcC----C-----------------CHHHH-HHHHH--------C
Q 043950          316 VIDAGLIVPLVNVLQDA---EFDIKKEAALAIANATVR----G-----------------THEQI-KYLVR--------E  362 (458)
Q Consensus       316 l~~~~~~~~L~~ll~~~---~~~~~~~a~~~L~~l~~~----~-----------------~~~~~-~~l~~--------~  362 (458)
                      ++..++++ ++..|...   |+++.... ..|......    -                 ++-+. +.|..        .
T Consensus       312 ~v~~~~l~-~l~~L~~r~~~Dedl~edl-~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~  389 (477)
T d1ho8a_         312 LLLGNALP-TVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  389 (477)
T ss_dssp             HHHHCHHH-HHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHcchhH-HHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhccc
Confidence            45555555 45556543   66654332 223222210    0                 00000 11211        1


Q ss_pred             --CChHHHHhhcc----------CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC
Q 043950          363 --GCIKPLCDLLL----------CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD  430 (458)
Q Consensus       363 --~~l~~L~~ll~----------~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  430 (458)
                        .+++.|+.+++          +.|+.+...|+.=++.+++..+..             +..+.+.|+.+.+..|++|+
T Consensus       390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g-------------r~il~~lg~K~~vM~Lm~h~  456 (477)
T d1ho8a_         390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLNHS  456 (477)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTSCS
T ss_pred             chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhcCC
Confidence              24788888886          346778888888899999987765             77788999999999999999


Q ss_pred             ChHHHHHHHHHHHHh
Q 043950          431 NNGIREKAVKILETY  445 (458)
Q Consensus       431 ~~~v~~~a~~~l~~~  445 (458)
                      |++|+..|...++.+
T Consensus       457 d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         457 DSRVKYEALKATQAI  471 (477)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988875

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=2.2e-06  Score=76.07  Aligned_cols=307  Identities=16%  Similarity=0.087  Sum_probs=187.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950           25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVI-QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN  103 (458)
Q Consensus        25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~  103 (458)
                      .+.+...+.+++.-....+...+..+++.. .......- .......+-.+...++ .+.+..++.++..+.. .+++|.
T Consensus       124 ~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~  200 (477)
T d1ho8a_         124 EQLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRD  200 (477)
T ss_dssp             HHHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHH
T ss_pred             hHHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHH
Confidence            345566677777777777777778877654 23222111 1112333334445555 7889999999999998 688888


Q ss_pred             HHHhC--CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhcCCCchhhHHhhh--CCHHHHHHHhcc
Q 043950          104 VVIDH--GAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAADSPGCRNLVLRE--EALIPLLAQLNE  162 (458)
Q Consensus       104 ~~~~~--~~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~l~~~l~~  162 (458)
                      .+...  ..++.++..+..                 ...++...++.+++-++.+.+. ...+.+.  +.++.++..+..
T Consensus       201 ~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~-~~~l~~~~~~~i~~l~~i~~~  279 (477)
T d1ho8a_         201 VIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF-ANELVQKYLSDFLDLLKLVKI  279 (477)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH-HHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHH-HHHHHHhhhHHHHHHHHHHHh
Confidence            77542  345555555422                 1357788999999999875433 3444443  347888888878


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCCh-----hhh-hhhHHHHHHhhc---CCChHHHHHHHHHHHHhccCChhhHHHHHH
Q 043950          163 HAKLSMLRIATWTLSKLCKGKPQPPF-----DQV-RPALPALAQLIH---LDDEEVLSDACWTLSYLSYGTNDKIQVVIE  233 (458)
Q Consensus       163 ~~~~~~~~~a~~~l~~l~~~~~~~~~-----~~~-~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  233 (458)
                      +..+.+.+.++.++.|++........     .+. .++++. +..|.   -.|+++.+..- .+..+....      +.+
T Consensus       280 s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~-~L~~~L~~~------~k~  351 (477)
T d1ho8a_         280 TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDIS-NLKEILENE------YQE  351 (477)
T ss_dssp             CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHH-HHHHHHHHH------HHT
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHH-HHHHHHHHH------HHh
Confidence            88889999999999999876422211     112 233433 44443   24566554432 222221110      000


Q ss_pred             hCcHH-HHHHHhCCC-Cc-cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc---------CChhhHHHHHHHH
Q 043950          234 AGVCR-RLVELLGHP-SP-SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH---------NHKKSIKKVACWT  301 (458)
Q Consensus       234 ~~~i~-~L~~ll~~~-~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~---------~~~~~v~~~a~~~  301 (458)
                      .--++ +..++.... .+ .+...--+---|.....+...      .++..|+++|++         +.|+.+...||.=
T Consensus       352 lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~------~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~D  425 (477)
T d1ho8a_         352 LTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNY------KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALND  425 (477)
T ss_dssp             CCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGG------HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccch------HHHHHHHHHHhhcccccccccCCCcceeehhhhh
Confidence            00011 111111110 11 122222223334443333322      357888898862         2278888999999


Q ss_pred             HHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950          302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV  349 (458)
Q Consensus       302 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~  349 (458)
                      ++.++++.|..+..+-+-|+=..+++++.++|++|+.+|+.|+..++.
T Consensus       426 iGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         426 ITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999999887877777788998999999999999999999999988864

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.53  E-value=3.7e-08  Score=71.35  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=89.0

Q ss_pred             hCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChH
Q 043950          244 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIV  323 (458)
Q Consensus       244 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~  323 (458)
                      |+++++.+|..|+++|+.+.            ...++.|+..|.++ ++.+|..|+++|+++..  +.         .++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~~---------~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER---------AVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--hh---------hHH
Confidence            46778899999999987753            13577888999988 99999999999998742  22         578


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHH
Q 043950          324 PLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLE  388 (458)
Q Consensus       324 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~  388 (458)
                      .|..++.++++.+|..|+++|+.+-   ++.         .++.|..+++++++.|+..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~---~~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIG---GER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHC---SHH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhC---ccc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8999999999999999999999883   322         3667788999999999999988774

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.32  E-value=1.1e-07  Score=68.74  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=87.7

Q ss_pred             hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHH
Q 043950           75 LMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALI  154 (458)
Q Consensus        75 l~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  154 (458)
                      |++++ +.+|..|++.|+.+..            ..++.|+..+.++++.+|..++++|+++..           .+.++
T Consensus         1 L~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~   56 (111)
T d1te4a_           1 MADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVE   56 (111)
T ss_dssp             CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHH
T ss_pred             CCCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHH
Confidence            34555 6788888888776532            357889999999999999999999988731           12567


Q ss_pred             HHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 043950          155 PLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLS  218 (458)
Q Consensus       155 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~  218 (458)
                      .++..+ .++++.++..++++|..+..          ...++.+..+++++++.++..++.+|.
T Consensus        57 ~L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888888 68899999999999998742          467888999999999999999988774

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.0017  Score=53.81  Aligned_cols=209  Identities=13%  Similarity=0.078  Sum_probs=151.7

Q ss_pred             HHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh----hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950          229 QVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD----FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN  304 (458)
Q Consensus       229 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n  304 (458)
                      +.+...+.+..|+..|..-+.+.|..+..+++++.+...    ....++...  -+.+..++..-.++++--.+...|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            446667889999999998888899999999999976432    233555532  23333344333345666666666776


Q ss_pred             hhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHC---CChHHHHhhccCCCHHHHH
Q 043950          305 ITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVRE---GCIKPLCDLLLCVDPKIVT  381 (458)
Q Consensus       305 l~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~  381 (458)
                      ++++ +.....+.....+..+.+.++.++.++...|...+..+.... +.....+...   .++..+..++.+++.-++.
T Consensus       141 cik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            6654 466777888888999999999999999999999999998764 3333333333   3466677788899988999


Q ss_pred             HHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950          382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVV  451 (458)
Q Consensus       382 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  451 (458)
                      .+++.|+.++-.-....          .....+.+..-++.+..|+.+.+..++-.|-.+..-|...+..
T Consensus       219 qSlKLLgelLldr~N~~----------vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnK  278 (330)
T d1upka_         219 QSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  278 (330)
T ss_dssp             HHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHhhhhHHH----------HHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCC
Confidence            99999999997655432          1244555666788999999999999998888887666555543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=0.03  Score=55.57  Aligned_cols=402  Identities=9%  Similarity=0.024  Sum_probs=197.2

Q ss_pred             HhhccHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCC-----CCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHH
Q 043950           20 TKLEILPAMVAGVWSD--DNSLQLEATTQFRILLSIE-----RSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALT   92 (458)
Q Consensus        20 ~~~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~   92 (458)
                      ...|-+..|++.+.++  +..+|..|+..|.+.....     .......-....+-..++..+.+++ ..++...+.++.
T Consensus        32 ~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~ll~~l~~~~-~~ir~~l~~~i~  110 (959)
T d1wa5c_          32 TQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAIS  110 (959)
T ss_dssp             TSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHH
Confidence            4446677777777644  4678999999998887531     0011111112223445566666666 789999999999


Q ss_pred             HHcCC-ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch---hh---HH--hhhCCHHHHHHHhc--
Q 043950           93 NIASG-TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC---RN---LV--LREEALIPLLAQLN--  161 (458)
Q Consensus        93 ~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~---~~--~~~~~l~~l~~~l~--  161 (458)
                      .++.. .|+.-     .+.++.+.+.++++++..+..++.++..++..-...   ..   .+  .-....+.+...+.  
T Consensus       111 ~I~~~d~p~~W-----p~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  185 (959)
T d1wa5c_         111 SIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTV  185 (959)
T ss_dssp             HHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccc-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            88862 11111     256888999999888888889999999988432110   00   00  00112222222221  


Q ss_pred             -----cccc-H-------HHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCC---------------hHHHHH
Q 043950          162 -----EHAK-L-------SMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDD---------------EEVLSD  212 (458)
Q Consensus       162 -----~~~~-~-------~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~---------------~~~~~~  212 (458)
                           .... .       .....+..++..+....... -.......++.+..++....               ..++..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  265 (959)
T d1wa5c_         186 DEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSS  265 (959)
T ss_dssp             HHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHH
T ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHH
Confidence                 1111 0       11222333333433322110 01111223333334443211               134555


Q ss_pred             HHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-----CCccchhhHHHHHhHhhcCChh--------hHHHHHhcCCh
Q 043950          213 ACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-----PSPSVLTPALWTVGNIVMGDDF--------QTQCIINHGAV  279 (458)
Q Consensus       213 ~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~l~~l~~~~~~--------~~~~~~~~~~~  279 (458)
                      .+..+..+.....+....... .+++.+..++..     ....+...++..+..++.....        ....++.    
T Consensus       266 i~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~----  340 (959)
T d1wa5c_         266 IQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE----  340 (959)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH----
Confidence            566666555444433332222 233333333321     2334555666666666543221        1111111    


Q ss_pred             HHHHHHhc----------------------cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc--cCChh
Q 043950          280 PCLLALLI----------------------HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ--DAEFD  335 (458)
Q Consensus       280 ~~l~~ll~----------------------~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~--~~~~~  335 (458)
                      ..+...+.                      .......|..|...+..++...++.....+..-+...+.....  +.+..
T Consensus       341 ~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  420 (959)
T d1wa5c_         341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWK  420 (959)
T ss_dssp             HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHH
T ss_pred             HHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchH
Confidence            11112221                      1102235666677777777644433222211111111222222  23566


Q ss_pred             hHHHHHHHHHHhhcCCCH------------HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCC
Q 043950          336 IKKEAALAIANATVRGTH------------EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGST  403 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~------------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~  403 (458)
                      .+..++.+++.+...+..            +....+.+  .+...+.......+.++..++++++.+.......      
T Consensus       421 ~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~--~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~------  492 (959)
T d1wa5c_         421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK--EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA------  492 (959)
T ss_dssp             HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH--HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH------
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHH--HHHHHHccCCCchHHHHHHHHHHHHHHHhhccHH------
Confidence            778888888887643210            11111111  1122222223455678888888888876542211      


Q ss_pred             CCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950          404 IGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVV  451 (458)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  451 (458)
                            ...     ..+..+..++.++++.|+..|.+.+.++....+.
T Consensus       493 ------~~~-----~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~  529 (959)
T d1wa5c_         493 ------QLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTIRES  529 (959)
T ss_dssp             ------HHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC
T ss_pred             ------HHH-----HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcc
Confidence                  122     2367777888889999999999999999875543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.039  Score=45.50  Aligned_cols=244  Identities=9%  Similarity=0.085  Sum_probs=161.9

Q ss_pred             hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChh----hHHHHHHh-CcHHHHHHHhCCCCccchhhHHHHHhHhhcCC
Q 043950          192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTND----KIQVVIEA-GVCRRLVELLGHPSPSVLTPALWTVGNIVMGD  266 (458)
Q Consensus       192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~~-~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  266 (458)
                      .+++..++..|..-+-+.+..+..++.++.....+    ..+.+... .++..|+.--.  ++++...+...|...+. .
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREcik-~  144 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIR-H  144 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHT-S
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHHh-h
Confidence            56677777888888888888888888888754332    12323322 34444444443  44455555555555544 6


Q ss_pred             hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHc---CChHHHHHHhccCChhhHHHHHHH
Q 043950          267 DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDA---GLIVPLVNVLQDAEFDIKKEAALA  343 (458)
Q Consensus       267 ~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~---~~~~~L~~ll~~~~~~~~~~a~~~  343 (458)
                      +.....++....+..+.+.++.+ +.++...|..++..+....+.....++..   .++.....++.+++.-++..++..
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            77778888888899999999999 99999999999999876555555555543   367777888999999999999999


Q ss_pred             HHHhhcCCCH--HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcc--h
Q 043950          344 IANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE--G  419 (458)
Q Consensus       344 L~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  419 (458)
                      |+.+......  -...++.+..-+..+..++.++...++-.|.-++.-+.....+          ..++...+....  .
T Consensus       224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnK----------p~~I~~IL~~Nr~kL  293 (330)
T d1upka_         224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK----------TQPILDILLKNQAKL  293 (330)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC----------CHHHHHHHHHTHHHH
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCC----------CHHHHHHHHHhHHHH
Confidence            9999874321  1223444455688899999999999998888777655544332          334555554332  4


Q ss_pred             HHHHHhhhcC--CChHHHHHHHHHHHHhcCCC
Q 043950          420 FKKIEGLKSH--DNNGIREKAVKILETYWCGR  449 (458)
Q Consensus       420 ~~~l~~l~~~--~~~~v~~~a~~~l~~~~~~~  449 (458)
                      ++-|.++..+  .++.....=..++..+-.-+
T Consensus       294 l~fl~~f~~d~~~DeqF~~EK~~lI~~I~~L~  325 (330)
T d1upka_         294 IEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLK  325 (330)
T ss_dssp             HHHHHHTTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCCCCCCchhhHHHHHHHHHHHHHhCC
Confidence            5555666544  24444333344454444433

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.021  Score=56.74  Aligned_cols=181  Identities=8%  Similarity=0.071  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch--------hhHHhh--h
Q 043950           81 PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC--------RNLVLR--E  150 (458)
Q Consensus        81 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--------~~~~~~--~  150 (458)
                      +.++..++++++..+.....  .. . ..+++.++..+.+++..++..|++++..++......        .+.+..  .
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~-~-~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQ-L-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HH-H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccH--HH-H-HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            67899999999998874321  11 1 245889999999999999999999999998543211        011100  0


Q ss_pred             CCHHHHHHHhcccccHH----HHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-----CCChHHHHHHHHHHHHhc
Q 043950          151 EALIPLLAQLNEHAKLS----MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-----LDDEEVLSDACWTLSYLS  221 (458)
Q Consensus       151 ~~l~~l~~~l~~~~~~~----~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-----~~~~~~~~~~~~~l~~l~  221 (458)
                      ..+..++..+.......    ....++.++..+..............+++.+...+.     ..++.....+..++..+.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            12334444443222111    112345555555443333333344555555555443     234566677777777776


Q ss_pred             cCC-hhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCC
Q 043950          222 YGT-NDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGD  266 (458)
Q Consensus       222 ~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  266 (458)
                      ... ++... -....+++.+...+..........++..+..+....
T Consensus       628 ~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         628 NYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            432 22223 233457788888887777777777877777665443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.39  E-value=0.1  Score=44.31  Aligned_cols=165  Identities=13%  Similarity=0.148  Sum_probs=108.7

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHHhhc----CCCchhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHh
Q 043950          111 VPIFVKLLAS----PSDDVREQAVWALGNVAA----DSPGCRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKL  179 (458)
Q Consensus       111 i~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l  179 (458)
                      +..+..++++    .++.++..+..+++++..    ..+.+.+.     .++.+...+.   ...+.+-...++.+|+|+
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  199 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDE-----LLQPLHDLLSQSSDRAKEEEIVLALKALGNA  199 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGG-----GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHH-----HHHHHHHHHHHhhcccchHHHHHHHHHHhcc
Confidence            5666677765    568888888888887763    33333222     2344444442   445556667788899997


Q ss_pred             hcCCCCCChhhhhhhHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCcc
Q 043950          180 CKGKPQPPFDQVRPALPALAQLIHL-------DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPS  250 (458)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~  250 (458)
                      -.          ...++.+..++..       ....++..+++++.++....+...+        +.+..++.+  .+.+
T Consensus       200 g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~E  261 (336)
T d1lsha1         200 GQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  261 (336)
T ss_dssp             TC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CC----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChH
Confidence            42          3566777777753       2467999999999999876554332        344455444  4567


Q ss_pred             chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC
Q 043950          251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG  308 (458)
Q Consensus       251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~  308 (458)
                      +|..|+..+...   +|..       ..+..+...+..+++.+|+......|.+++..
T Consensus       262 vRiaA~~~lm~t---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         262 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhc---CCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            888888777442   3322       24667778887776888998888889998874

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.32  E-value=0.25  Score=41.82  Aligned_cols=207  Identities=17%  Similarity=0.164  Sum_probs=123.9

Q ss_pred             ChHHHHHhhCCCC--HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc---cccHHHHHHHHHHHHHh----h
Q 043950          110 AVPIFVKLLASPS--DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE---HAKLSMLRIATWTLSKL----C  180 (458)
Q Consensus       110 ~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~~a~~~l~~l----~  180 (458)
                      .+..+.+++.++.  .......+..+....  .|. .+      .+..+..++..   ..++.+...+.-+++++    |
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~--~Pt-~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQ--QAT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTC--CCC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccC--CCC-HH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            3566777776533  222233333343322  232 12      34455555532   24566667666666555    4


Q ss_pred             cCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-------Cccchh
Q 043950          181 KGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-------SPSVLT  253 (458)
Q Consensus       181 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~~~~  253 (458)
                      ...+.........+...+.+.....+.+-+...+.+|+|+-  .+         +.++.+.+++...       +..+|.
T Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--~p---------~~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--QP---------NSIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CG---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC--CH---------hHHHHHHHHhcccccccccccHHHHH
Confidence            44344444444555566666667778888888899999985  22         3456777777542       345889


Q ss_pred             hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc-CChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc-
Q 043950          254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-NHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD-  331 (458)
Q Consensus       254 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-  331 (458)
                      .|++++.+++...+...+        +.+..++.+ ..++++|..|+..+... ..+..         .+..+...+.. 
T Consensus       229 aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E  290 (336)
T d1lsha1         229 EAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC
Confidence            999999999876654433        233444333 33678999888888654 22322         34456665644 


Q ss_pred             CChhhHHHHHHHHHHhhcCCCHH
Q 043950          332 AEFDIKKEAALAIANATVRGTHE  354 (458)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~~~~~~  354 (458)
                      ++..|.......|.++.....+.
T Consensus       291 ~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcc
Confidence            57888888888888888765543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.83  E-value=0.0047  Score=49.65  Aligned_cols=40  Identities=15%  Similarity=0.140  Sum_probs=26.1

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHH
Q 043950           74 FLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWA  132 (458)
Q Consensus        74 ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  132 (458)
                      +|.++. .+++..|++                  .-.+..|..+++++++.||..++..
T Consensus        50 ~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~   89 (233)
T d1lrva_          50 YLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYR   89 (233)
T ss_dssp             GTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTT
T ss_pred             HhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHH
Confidence            556666 677766643                  1225677777888888888777654

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.45  Score=40.31  Aligned_cols=163  Identities=13%  Similarity=0.094  Sum_probs=113.3

Q ss_pred             hhhHHHHHhcCChHHHHHHhcc----------CChhhHHHHHHHHHHHhhcCCHHHHHHHH-HcCChHHHHHHhccCChh
Q 043950          267 DFQTQCIINHGAVPCLLALLIH----------NHKKSIKKVACWTISNITAGNREQIQAVI-DAGLIVPLVNVLQDAEFD  335 (458)
Q Consensus       267 ~~~~~~~~~~~~~~~l~~ll~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~~~~~~L~~ll~~~~~~  335 (458)
                      ..+.+.+ ..+++..|..+|..          ..+.....++..++..+... ......++ ..+.+..+...+.++...
T Consensus        36 ~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~  113 (343)
T d2bnxa1          36 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPN  113 (343)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHH
T ss_pred             chHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchH
Confidence            3455554 34556666665521          11345677888888888754 45555555 467888999999999999


Q ss_pred             hHHHHHHHHHHhhcCCC-----HHH------HHHHHHCCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhchhhcccCCC
Q 043950          336 IKKEAALAIANATVRGT-----HEQ------IKYLVREGCIKPLCDLLLCV-DPKIVTVCLEGLENILKVGEAEKNTGST  403 (458)
Q Consensus       336 ~~~~a~~~L~~l~~~~~-----~~~------~~~l~~~~~l~~L~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~  403 (458)
                      ++..|...|..++....     ...      .....+.+-+..+++.++.. +.+.+..++..+..++...+..+     
T Consensus       114 tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~-----  188 (343)
T d2bnxa1         114 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-----  188 (343)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH-----
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHH-----
Confidence            99999999988875421     111      12233456678888877654 56888889988988887666543     


Q ss_pred             CCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHH
Q 043950          404 IGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKA  438 (458)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a  438 (458)
                        ....++..|...|..+.+..+.+..++++..+.
T Consensus       189 --~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi  221 (343)
T d2bnxa1         189 --FRVHIRSELMRLGLHQVLQELREIENEDMKVQL  221 (343)
T ss_dssp             --HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             --HHHHHHHHHHHCChHHHHHHHHccCChHHHHHH
Confidence              355678888899999999999888888876543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.69  E-value=0.016  Score=46.43  Aligned_cols=66  Identities=9%  Similarity=0.081  Sum_probs=42.4

Q ss_pred             hHHHHHHhccCChhhHHHHHHH-----HHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHH
Q 043950          322 IVPLVNVLQDAEFDIKKEAALA-----IANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGL  387 (458)
Q Consensus       322 ~~~L~~ll~~~~~~~~~~a~~~-----L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l  387 (458)
                      .+.|..++.++++.|+..++..     |..++...+......+...-..+.|..+++++++.|+..+...+
T Consensus       116 ~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence            3456666777777777776553     33334444555555555555567777888888888887776543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.49  Score=40.08  Aligned_cols=157  Identities=12%  Similarity=0.123  Sum_probs=99.2

Q ss_pred             HHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhc----C-----C-CCHHHHHHHHHHHHHHc
Q 043950           27 AMVAGVWSDD-NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLM----R-----E-DYPQLQYEAAWALTNIA   95 (458)
Q Consensus        27 ~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~----~-----~-~~~~i~~~a~~~L~~l~   95 (458)
                      ..+..|++.- .......+.-|+--+...+....+.+ ..+++..|+.+|.    .     . .+...+..+++||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            3455555432 22223334444433444323345555 4556777777763    1     1 12457889999999999


Q ss_pred             CCChhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--CchhhHH----------hhhCCHHHHHHHhcc
Q 043950           96 SGTSMNTNVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAADS--PGCRNLV----------LREEALIPLLAQLNE  162 (458)
Q Consensus        96 ~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~----------~~~~~l~~l~~~l~~  162 (458)
                      . +......++ ..+++..+...+.++.+.++..|+..|..+|...  +.....+          .+.+-+.+++..+..
T Consensus        85 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             c-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            8 455555555 4578999999999999999999999999998543  2222222          223456677777765


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCC
Q 043950          163 HAKLSMLRIATWTLSKLCKGKPQ  185 (458)
Q Consensus       163 ~~~~~~~~~a~~~l~~l~~~~~~  185 (458)
                      ..+.+.+..++..+..+....+.
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             cccHHHHHHHHHHHHHHHcCccc
Confidence            66677777777777777766543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.16  Score=36.94  Aligned_cols=75  Identities=11%  Similarity=-0.085  Sum_probs=63.8

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ++..+..-+.+.++.++..|+..|-.++.++.+.+...+.+.+++..|..++..      .+..|+.+++.++.......
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            455677778889999999999999999999999998998888999999998863      56789999999998887655


Q ss_pred             h
Q 043950          395 E  395 (458)
Q Consensus       395 ~  395 (458)
                      +
T Consensus       126 p  126 (145)
T d1ujka_         126 P  126 (145)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.16  Score=36.88  Aligned_cols=75  Identities=11%  Similarity=-0.098  Sum_probs=63.1

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ++..+..-+.++++.++..|+..|-.++.++.+.+...+.+..+++.|..++..      .++.|+.+++.++.......
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            455677778888999999999999999999988988888888899999998863      46789999999998887654


Q ss_pred             h
Q 043950          395 E  395 (458)
Q Consensus       395 ~  395 (458)
                      .
T Consensus       119 ~  119 (143)
T d1mhqa_         119 P  119 (143)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.00  E-value=0.69  Score=33.40  Aligned_cols=79  Identities=16%  Similarity=0.169  Sum_probs=58.9

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cCCChHHHHHHHHHH
Q 043950          364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SHDNNGIREKAVKIL  442 (458)
Q Consensus       364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~~l  442 (458)
                      ++..|..-+.++++.++..|+.+|..+++....            .|...+...+.++.+..+. ...+..|++++..++
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~------------~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li  110 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA------------PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELV  110 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccch------------HHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            356677778899999999999999999987443            2566676777788888775 445788999999999


Q ss_pred             HHhcCCCCCCCC
Q 043950          443 ETYWCGRVVGPQ  454 (458)
Q Consensus       443 ~~~~~~~~~~~~  454 (458)
                      +..-..-..+|.
T Consensus       111 ~~W~~~f~~~~~  122 (145)
T d1dvpa1         111 QTWAYAFRSSDK  122 (145)
T ss_dssp             HHHHHHTTTCSS
T ss_pred             HHHHHHhCCCcc
Confidence            886443333444

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.79  E-value=0.25  Score=35.83  Aligned_cols=75  Identities=5%  Similarity=-0.044  Sum_probs=61.6

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhch
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKVGE  395 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~  395 (458)
                      ++..|..-+.++++.++..|+..|-.++.++...+...+.+.+++..|..+++. .+..|+.+++.++........
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            566677778889999999999999999999888888887777888888888764 467899999998888776443

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.03  E-value=0.36  Score=35.22  Aligned_cols=74  Identities=12%  Similarity=-0.027  Sum_probs=61.1

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950          321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG  394 (458)
Q Consensus       321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~  394 (458)
                      ++..+..-+.+.++.++..|+..|-.++.++...+...+.+..++..|..++..      .+..|+.+++..+.......
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence            455677778888999999999999999999888888888888888889988863      36689999998888776543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=0.46  Score=34.32  Aligned_cols=75  Identities=8%  Similarity=0.012  Sum_probs=60.2

Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC------CCCHHHHHHHHHHHHHHcC
Q 043950           23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR------EDYPQLQYEAAWALTNIAS   96 (458)
Q Consensus        23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~i~~~a~~~L~~l~~   96 (458)
                      .++..+.+.|++.++.+++.|+..|-.++...+.....++...+++..|+++++.      .+ ..++..++..+...+.
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~-~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCc-HHHHHHHHHHHHHHHH
Confidence            4567778888899999999999999888877656666778888899999999863      33 6899999998888765


Q ss_pred             CC
Q 043950           97 GT   98 (458)
Q Consensus        97 ~~   98 (458)
                      ..
T Consensus       124 ~f  125 (145)
T d1ujka_         124 GL  125 (145)
T ss_dssp             HC
T ss_pred             HC
Confidence            43

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.98  E-value=4.9  Score=28.50  Aligned_cols=70  Identities=13%  Similarity=0.101  Sum_probs=55.2

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc------CCChHHHHH
Q 043950          364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS------HDNNGIREK  437 (458)
Q Consensus       364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~v~~~  437 (458)
                      .+..|..-+.+.++.++..++.+|..+++....            .|...+....+++.+..+..      ..++.|+++
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~------------~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~k  106 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE------------KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH------------HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH------------HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            456677778889999999999999999886433            36777778888888888864      356889999


Q ss_pred             HHHHHHHh
Q 043950          438 AVKILETY  445 (458)
Q Consensus       438 a~~~l~~~  445 (458)
                      +..+++..
T Consensus       107 il~li~~W  114 (143)
T d1mhqa_         107 VIEILFSW  114 (143)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98888765

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.35  E-value=9.9  Score=31.46  Aligned_cols=186  Identities=12%  Similarity=0.017  Sum_probs=102.0

Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC
Q 043950          106 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ  185 (458)
Q Consensus       106 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~  185 (458)
                      ++...+..|+.++.++++.-|.....+|.++-..-...|..+.. ..-..+.+.+.......-...+++.++.+..+-..
T Consensus       130 id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~  208 (343)
T d2jaka1         130 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFAL  208 (343)
T ss_dssp             SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCS
T ss_pred             CCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccC
Confidence            33445788899999999999999999999887666666665543 22334444443333333445566777777666433


Q ss_pred             C-ChhhhhhhHHHHHHhhcCCCh-HHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC---CCccchhhHHHHHh
Q 043950          186 P-PFDQVRPALPALAQLIHLDDE-EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH---PSPSVLTPALWTVG  260 (458)
Q Consensus       186 ~-~~~~~~~~l~~l~~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~l~  260 (458)
                      . ......-....++++.++..- ..-.....++......++.....        .+-.++++   .+..-...-+.-+.
T Consensus       209 plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~--------~i~~llk~WP~t~~~Kev~FL~el~  280 (343)
T d2jaka1         209 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP--------VVMALLKYWPKTHSPKEVMFLNELE  280 (343)
T ss_dssp             SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH--------HHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHH--------HHHHHHHhCCCCCchHHHHHHHHHH
Confidence            3 233334444555666665442 22333334444444344433332        22233433   23322333344455


Q ss_pred             HhhcCC-hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950          261 NIVMGD-DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTI  302 (458)
Q Consensus       261 ~l~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l  302 (458)
                      .+...- +.....+. ..++..+.+++.++ +.+|.+.|....
T Consensus       281 ~il~~~~~~~f~~~~-~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         281 EILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHHHhCCHHHHHHHH-HHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            554433 33333332 35778888888888 888877766544