Citrus Sinensis ID: 043987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQKAFLNTITTSRCSFPDTFRQGYTGQHAVVSGY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHccccccccEEcccHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccEEEEEccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccEEEEEEcc
Coil and Loop (DISEMBL)
MISSKRLIKLARKSQMIASMgrerislprtnstdyhlgshnkssssvaekghfviyttdqrryvlpltylnSSIFLELLKLSEeeyglksdgpitlpcdAVFMDLVVSFIQRGIDSEGVQKAFLNTittsrcsfpdtfrqgytgqhavvsgy
Flexible Loop (DISEMBL)
MISSKRLIKLARKSQMIasmgrerislprtnstdyhlgshnkssssvaekGHFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQKAFLNTITtsrcsfpdtfrqgytgqhavvsgy
Low Complexity Region (SEG)
MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQKAFLNTITTSRCSFPDTFRQGYTGQHAVVSGY
Disordered region (IsUnstruct)
**************************************************GHFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQKAFLNTITTSRCSFPDTFRQGYTG********
Disordered Region (DISOPRED)
***SKRLIKLARKSQ***********************************GHFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVV*****************NTITT****************HAVVSGY
Disordered Region (DISEMBL)
MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYH***********AEKGHFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQKAFLNTITTSRCSFPDTFRQGYTGQHAVVSGY
Disordered Region (DISPRO)
*ISSKRLIKLARKSQMIASMGRERISL*********************EKGHFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQKAFLNTITTSRCSFPD*****YTGQHAVVSGY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQKAFLNTITTSRCSFPDTFRQGYTGQHAVVSGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.480	0.811	0.363	6e-07
P33080	92	Auxin-induced protein X10	no	no	0.381	0.630	0.419	4e-06
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.407	0.673	0.378	8e-06
P33081	82	Auxin-induced protein 15A	no	no	0.401	0.743	0.365	2e-05
P33082	82	Auxin-induced protein X15	no	no	0.421	0.780	0.358	3e-05
P33079	93	Auxin-induced protein 10A	no	no	0.322	0.526	0.431	7e-05

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 4/77 (5%)

Query: 39  SHNKSSSSVA--EKGHFVIYTTDQ-RRYVLPLTYLNSSIFLELLKLSEEEYGL-KSDGPI 94
           S N++SS     EKG+  +Y  ++ RR+V+P++YLN   F +LL  +EEE+G    +G +
Sbjct: 14  SANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGL 73

Query: 95  TLPCDAVFMDLVVSFIQ 111
           T+PC       + SF+ 
Sbjct: 74  TIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 4/62 (6%)

Query: 41 NKSSSSVAE--KGHFVIYTTDQ-RRYVLPLTYLNSSIFLELLKLSEEEYGLKSD-GPITL 96
          N++SS   E  KG+ V+Y  D+ RR+++P++YLN   F +LL  +EEE+G     G +T+
Sbjct: 16 NQASSKSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTI 75

Query: 97 PC 98
          PC
Sbjct: 76 PC 77

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 37 LGSHNKSSSSV--AEKGHFVIYTTDQ-RRYVLPLTYLNSSIFLELLKLSEEEYGLKSD-G 92
          L + N++SS V  A KG+  +Y  +  +R+V+P+++LN  +F +LL  +EEE+G     G
Sbjct: 12 LSARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMG 71

Query: 93 PITLPC 98
           +T+PC
Sbjct: 72 GLTIPC 77

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 38 GSHNKSSSSVAEKGHFVIYTTDQ-RRYVLPLTYLNSSIFLELLKLSEEEYGLKSD-GPIT 95
          G    S ++ A KG+  +Y  ++ +R+V+P++YLN   F +LL  +EEE+G     G +T
Sbjct: 7  GIRKASKAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLT 66

Query: 96 LPC 98
          +PC
Sbjct: 67 IPC 69

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 35 YHLGSHNKSSSSV-AEKGHFVIYTTDQ-RRYVLPLTYLNSSIFLELLKLSEEEYGLKSD- 91
          + L    K+S++V A KG+  +Y  ++ +R+V+P++Y+N   F +LL  +EEE+G     
Sbjct: 3  FRLPGIRKASNAVDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPM 62

Query: 92 GPITLPC 98
          G +T+PC
Sbjct: 63 GGLTIPC 69

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 50 KGHFVIYTTDQ-RRYVLPLTYLNSSIFLELLKLSEEEYGLKSD-GPITLPC 98
          KG+  +Y  D+ RR+ +P++YLN   F ELL  +EEE+G     G +T+PC
Sbjct: 28 KGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPC 78

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
225428294	146	PREDICTED: auxin-induced protein 6B-like	0.960	1.0	0.532	2e-38
225428225	148	PREDICTED: uncharacterized protein LOC10	0.973	1.0	0.506	7e-38
297744481	290	unnamed protein product [Vitis vinifera]	0.940	0.493	0.530	6e-37
225428205	148	PREDICTED: auxin-induced protein 6B-like	0.973	1.0	0.506	1e-36
225428223	148	PREDICTED: indole-3-acetic acid-induced	0.953	0.979	0.510	3e-36
225428288	148	PREDICTED: auxin-induced protein 6B-like	0.973	1.0	0.513	3e-36
225428213	148	PREDICTED: uncharacterized protein LOC10	0.934	0.959	0.506	7e-36
224080736	148	SAUR family protein [Populus trichocarpa	0.848	0.871	0.548	9e-36
297744512	141	unnamed protein product [Vitis vinifera]	0.927	1.0	0.493	9e-36
225428229	148	PREDICTED: uncharacterized protein LOC10	0.848	0.871	0.533	1e-35

>gi|225428294|ref|XP_002282698.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 116/152 (76%), Gaps = 6/152 (3%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
           MIS K+LIK+ARK Q  A++GR+RIS PRT++ D   G+    S+SVA+KGHFV+Y TD+
Sbjct: 1   MISPKKLIKMARKWQRRAALGRKRISSPRTDA-DMDAGT---CSTSVADKGHFVVYPTDK 56

Query: 61  RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
           RR+++PL YL+++IF EL K+SEEE+GL+SDGPITLPCD+VFM  ++  IQRG+ ++ ++
Sbjct: 57  RRFMIPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGV-AKDME 115

Query: 121 KAFLNTITTSRCSFPDTFRQGYTGQHAVVSGY 152
           KA + ++ TSRCS   +  Q +  QH +V GY
Sbjct: 116 KALIFSLVTSRCS-QSSSHQEHISQHLLVCGY 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428225|ref|XP_002282054.1| PREDICTED: uncharacterized protein LOC100253806 [Vitis vinifera]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/152 (50%), Positives = 110/152 (72%), Gaps = 4/152 (2%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
           MIS K+LI++ARK Q +A++GR+RISL R N     +     S+SSVA+KGHFV+Y++D+
Sbjct: 1   MISPKKLIRMARKWQKMAALGRKRISLQRINKG---VNEDCCSTSSVADKGHFVVYSSDR 57

Query: 61  RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
           RR+V+PL YLNS IF EL ++SEEE+G++S GPI LPCD+VF+D V+SFIQRG+  E ++
Sbjct: 58  RRFVIPLAYLNSEIFRELFQMSEEEFGIQSAGPIILPCDSVFLDYVISFIQRGVAKE-LE 116

Query: 121 KAFLNTITTSRCSFPDTFRQGYTGQHAVVSGY 152
           +A + +I  S CS    F Q  T +  ++  Y
Sbjct: 117 RALIMSIAPSNCSSSSYFHQEQTNEQLLLCAY 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744481|emb|CBI37743.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 114/149 (76%), Gaps = 6/149 (4%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
           MIS K+LIK+ARK Q  A++GR+RIS PRT++ D   G+    S+SVA+KGHFV+Y TD+
Sbjct: 1   MISPKKLIKMARKWQRRAALGRKRISSPRTDA-DMDAGT---CSTSVADKGHFVVYPTDK 56

Query: 61  RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
           RR+++PL YL+++IF EL K+SEEE+GL+SDGPITLPCD+VFM  ++  IQRG+ ++ ++
Sbjct: 57  RRFMIPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGV-AKDME 115

Query: 121 KAFLNTITTSRCSFPDTFRQGYTGQHAVV 149
           KA + ++ TSRCS   +  Q +  QH +V
Sbjct: 116 KALIFSLVTSRCS-QSSSHQEHISQHLLV 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428205|ref|XP_002279052.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/152 (50%), Positives = 115/152 (75%), Gaps = 4/152 (2%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
           MI+ K+LIK+ARK Q IA+M R+RISLPRT+     L +   S+S+VA+KGHFV+Y++D+
Sbjct: 1   MINPKKLIKMARKWQKIAAMKRKRISLPRTDEV---LDADGCSTSAVADKGHFVVYSSDK 57

Query: 61  RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
           RR+V+PL YLN+ IF ELL++SEEE+G++S+GPI LPCD+VFMD V+SFIQ G+ ++ ++
Sbjct: 58  RRFVIPLVYLNNEIFRELLQMSEEEFGIQSEGPIILPCDSVFMDYVISFIQHGV-AKDLE 116

Query: 121 KAFLNTITTSRCSFPDTFRQGYTGQHAVVSGY 152
           +A + +I +S CS      QGY  +  ++  +
Sbjct: 117 RALIMSIASSSCSASSHILQGYNNEQMLLCAF 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428223|ref|XP_002279270.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 76/149 (51%), Positives = 108/149 (72%), Gaps = 4/149 (2%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
           MIS+K+LIK+ARK Q +A++ R+RISLPRT+     + + + S+SS AEKGHFV+Y+ D+
Sbjct: 1   MISAKKLIKMARKWQKMAAIRRKRISLPRTSR---EVDAESCSTSSTAEKGHFVVYSADE 57

Query: 61  RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
            R+V+PL YLNS+IF EL K+SEEE+GL S+GPITLPCDAVF++ ++S +Q+ I ++ ++
Sbjct: 58  SRFVVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSI-AKDLE 116

Query: 121 KAFLNTITTSRCSFPDTFRQGYTGQHAVV 149
           KA L  I T RC       Q    Q  +V
Sbjct: 117 KALLTAIATGRCLSTSNICQEQGNQQLLV 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428288|ref|XP_002279716.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 115/152 (75%), Gaps = 4/152 (2%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
           MI+ K+LIK+ARK Q IA+M R+RISLPRT   D  L +   S+SSVA+KGHFV+Y+ D+
Sbjct: 1   MINPKKLIKMARKWQKIAAMKRKRISLPRT---DMVLDADCCSTSSVADKGHFVVYSADR 57

Query: 61  RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
           RR+V+PL YLN+ IF +LL++SEEE+G++S+GPI LPCD+VFMD  +SFIQRG+ ++ ++
Sbjct: 58  RRFVIPLVYLNNEIFRQLLQMSEEEFGVQSEGPIILPCDSVFMDYAISFIQRGV-AKDLE 116

Query: 121 KAFLNTITTSRCSFPDTFRQGYTGQHAVVSGY 152
           +A + +I +S CS    F QG + +  ++  +
Sbjct: 117 RALIMSIGSSNCSSSAYFHQGQSNEQLLLCAF 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428213|ref|XP_002279151.1| PREDICTED: uncharacterized protein LOC100253738 [Vitis vinifera]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/146 (50%), Positives = 106/146 (72%), Gaps = 4/146 (2%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
           MI  K+LI++ARK Q +A++GR+RISL R N     +   + S+SSVA+KGHFV+Y++D+
Sbjct: 1   MICPKKLIRMARKWQKMAALGRKRISLQRINEG---VDEESCSTSSVADKGHFVVYSSDR 57

Query: 61  RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
           RR+V+PL YL+S I  EL ++SEEEYG++S GPI LPCD+VF+D V+SFIQRG+  E ++
Sbjct: 58  RRFVIPLMYLDSEIMRELFQMSEEEYGIQSTGPIILPCDSVFLDYVISFIQRGVAKE-LE 116

Query: 121 KAFLNTITTSRCSFPDTFRQGYTGQH 146
           +A + +I  S CS    F Q  T + 
Sbjct: 117 RALIMSIAPSNCSSSSYFHQEQTNEQ 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080736|ref|XP_002306218.1| SAUR family protein [Populus trichocarpa] gi|222849182|gb|EEE86729.1| SAUR family protein [Populus trichocarpa]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/133 (54%), Positives = 105/133 (78%), Gaps = 4/133 (3%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
           MIS+K+LI+LARK Q +A++ ++R++LP+T S+   L S ++S+SS AEKGHFV+YTTD+
Sbjct: 1   MISAKKLIRLARKWQKLAAIRQKRLTLPQTISS---LESDDRSTSSTAEKGHFVVYTTDK 57

Query: 61  RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
           +R+VLPL YLN+ I  EL  L+EEE+GL SDGPITLPCDA FM+  +  IQ+ + ++ ++
Sbjct: 58  KRFVLPLNYLNNEIVRELFNLAEEEFGLTSDGPITLPCDATFMEYAIILIQQNV-AKDIE 116

Query: 121 KAFLNTITTSRCS 133
           KA L TI ++RCS
Sbjct: 117 KALLVTIASNRCS 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744512|emb|CBI37774.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 75/152 (49%), Positives = 108/152 (71%), Gaps = 11/152 (7%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
           MI+ K+LIK+ARK Q IA+M R+RI+LPRT+             + VA KGHFV+YT DQ
Sbjct: 1   MINPKKLIKMARKWQKIAAMKRKRITLPRTDEI---------LDADVANKGHFVVYTADQ 51

Query: 61  RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
           RR+++PL +L+++IF EL ++SEEE+GL S+GPITLP D+VFM+ ++  IQRG+ ++ ++
Sbjct: 52  RRFMIPLVFLSNNIFRELFRMSEEEFGLPSNGPITLPYDSVFMEYIIPLIQRGM-AKDIE 110

Query: 121 KAFLNTITTSRCSFPDTFRQGYTGQHAVVSGY 152
           KA L +I TSRCS   +  QG  G   ++ GY
Sbjct: 111 KALLISIATSRCSLSSS-HQGQMGHQLLLCGY 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428229|ref|XP_002279305.1| PREDICTED: uncharacterized protein LOC100267542 [Vitis vinifera]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/133 (53%), Positives = 106/133 (79%), Gaps = 4/133 (3%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
           MI+ K+LIK+AR+ Q +A++ R+RISLPRT+    +LG+ + S+SSVA+KGHFV+YT DQ
Sbjct: 1   MINPKKLIKMAREWQKVAAIRRKRISLPRTSQ---YLGAGHCSTSSVADKGHFVVYTADQ 57

Query: 61  RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
           RR+++PL YLNS IF EL ++SEEE+GL SDGPITLPCD+ FM+ ++  +QRG+ ++ ++
Sbjct: 58  RRFMIPLVYLNSEIFRELFEMSEEEFGLPSDGPITLPCDSFFMEYILFLVQRGV-AKNLE 116

Query: 121 KAFLNTITTSRCS 133
           KA L ++  ++ S
Sbjct: 117 KALLTSVAHTQSS 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2013618	148	AT1G29460 "AT1G29460" [Arabido	0.940	0.966	0.472	5.4e-31
TAIR|locus:2013753	141	AT1G29420 "AT1G29420" [Arabido	0.855	0.921	0.446	5e-28
TAIR|locus:2013608	141	AT1G29450 "AT1G29450" [Arabido	0.809	0.872	0.466	2.8e-27
TAIR|locus:2013598	141	SAUR63 "AT1G29440" [Arabidopsi	0.921	0.992	0.449	4.5e-27
TAIR|locus:2013703	143	SAUR68 "AT1G29510" [Arabidopsi	0.815	0.867	0.466	1.9e-26
TAIR|locus:2013593	141	AT1G29430 "AT1G29430" [Arabido	0.822	0.886	0.462	1.8e-25
TAIR|locus:2180270	142	SAUR75 "AT5G27780" [Arabidopsi	0.822	0.880	0.466	2.2e-25
TAIR|locus:2013698	135	AT1G29500 "AT1G29500" [Arabido	0.796	0.896	0.421	8.7e-24
TAIR|locus:2013653	102	AT1G29490 "AT1G29490" [Arabido	0.611	0.911	0.495	3.9e-21
TAIR|locus:2199819	123	AT1G76190 "AT1G76190" [Arabido	0.657	0.813	0.365	8.8e-15

TAIR|locus:2013618 AT1G29460 "AT1G29460" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 69/146 (47%), Positives = 107/146 (73%)

Query:     1 MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
             MI++K+L+K+A+K Q  A++ R+RIS  R+ +T     +   SS++V EKG FV+YT D+
Sbjct:     1 MINTKKLLKMAKKWQQRAALKRKRISFQRSTTTTTTTTTTTSSSTAV-EKGCFVVYTVDK 59

Query:    61 RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
              R+  PL+YLN+S+F ELLK+SEEE+GL++ GPITLP D+VF++ ++ FI+R +D +  +
Sbjct:    60 IRFAFPLSYLNNSVFEELLKISEEEFGLRAGGPITLPFDSVFLEYLIKFIERRMDGD-TE 118

Query:   121 KAFLNTITTSRCSF-PDTFRQGYTGQ 145
             KA L +I+++RCS  P   + GYT Q
Sbjct:   119 KALLMSISSARCSMQPQEQQSGYTQQ 144

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013753 AT1G29420 "AT1G29420" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 62/139 (44%), Positives = 103/139 (74%)

Query:     1 MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
             M+++K+L+K+A+K Q  A++ R+RIS  R  STD        SSS+ AEKG FV+YT+D+
Sbjct:     1 MMNTKKLLKMAKKWQQRAALRRKRISFHR--STD------TTSSSTAAEKGCFVVYTSDR 52

Query:    61 RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
              R+  P++YL++S+  ELLK+SEEE+G+ ++GPITLP D+VF++ ++  +QR +D +  +
Sbjct:    53 IRFAFPISYLSNSVIQELLKISEEEFGIPTEGPITLPFDSVFLEYLIRLVQRRMDGD-TE 111

Query:   121 KAFLNTITTSRCSFPDTFR 139
             KA + +I+++RCS P +F+
Sbjct:   112 KALITSISSTRCSLPCSFQ 130

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013608 AT1G29450 "AT1G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 62/133 (46%), Positives = 98/133 (73%)

Query:     1 MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
             M+++K+LIK+A+K Q  A++ R+RIS  R++S          +SS+ AEKG FV+YTTD 
Sbjct:     1 MMNTKKLIKMAKKWQQRAALHRKRISFQRSSSA---------TSSTAAEKGCFVVYTTDS 51

Query:    61 RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
              R+  PL+YL++S+F ELLK+SEEE+GL + GPIT P D+VF++ ++  +QR +D++  +
Sbjct:    52 TRFAFPLSYLSNSVFQELLKISEEEFGLPTGGPITSPFDSVFLEYLIKLVQRRMDAD-TE 110

Query:   121 KAFLNTITTSRCS 133
             KA L +I+++RCS
Sbjct:   111 KALLMSISSARCS 123

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013598 SAUR63 "AT1G29440" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 67/149 (44%), Positives = 102/149 (68%)

Query:     1 MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
             MI++K+L+K+A+K Q  A++ R+RIS  R+        S   SSSS  EKG FV+YT D+
Sbjct:     1 MINAKKLMKMAKKWQQRAALHRKRISFQRS--------SVFTSSSSTVEKGCFVVYTADK 52

Query:    61 RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
              R+  P++YL++S+  ELLK+SEE++GL ++GPITLP D+ F++ +V  IQR +D E  +
Sbjct:    53 IRFAFPISYLSNSVVQELLKISEEDFGLPTEGPITLPFDSAFLEYLVKLIQRRMD-EDTE 111

Query:   121 KAFLNTITTSRCSFPDTFRQGYTGQHAVV 149
             KA L +I+++RCSF    +Q  T Q  +V
Sbjct:   112 KALLLSISSARCSFQPQEQQCSTTQQLLV 140

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009926 "auxin polar transport" evidence=IDA

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2013703 SAUR68 "AT1G29510" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 62/133 (46%), Positives = 96/133 (72%)

Query:     1 MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
             MI++K+L+K+A+K Q  A++ R+RIS  R+N           SSSS  EKG FV+YT D+
Sbjct:     2 MINAKKLMKMAKKWQQRAALHRKRISFQRSNVFT--------SSSSTVEKGCFVVYTADK 53

Query:    61 RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
              R+  P++YL++SI  ELLK+SEEE+GL ++GPITLP D+VF++ ++  IQR +D +  +
Sbjct:    54 IRFAFPISYLSNSIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDGD-TE 112

Query:   121 KAFLNTITTSRCS 133
             KA L +I++++CS
Sbjct:   113 KALLMSISSAKCS 125

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013593 AT1G29430 "AT1G29430" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 62/134 (46%), Positives = 96/134 (71%)

Query:     1 MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
             MI++K+L+KLA+K Q  A++ R+RIS  R++ T         SS +  EKG FV+YT D+
Sbjct:     2 MINAKKLMKLAKKWQQRAALKRKRISFQRSSITT--------SSQTAVEKGCFVVYTADK 53

Query:    61 RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
              R+  PL+YL+++I  ELLK+SEEE+GL ++GPITLP D+ F++ +++ IQR +D E  +
Sbjct:    54 IRFSFPLSYLSNTIVQELLKISEEEFGLPTEGPITLPFDSAFLEYLINLIQRRMD-EDTE 112

Query:   121 KAFLNTITTSRCSF 134
             KA L +I+++R SF
Sbjct:   113 KALLLSISSARSSF 126

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180270 SAUR75 "AT5G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 62/133 (46%), Positives = 94/133 (70%)

Query:     1 MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
             MI++K L+KLA+  Q  A++ R+RIS  R++ T         SS +  EKG FV+YT D+
Sbjct:     2 MINAKTLMKLAKTWQQRAALKRKRISFQRSSIT-------TTSSQTTVEKGCFVVYTADK 54

Query:    61 RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
              R+  PL+YL+++I  ELLK+SEEE+GL ++GPITLP D+VF++ ++  IQR +D E  +
Sbjct:    55 IRFSFPLSYLSNTIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMD-EDTE 113

Query:   121 KAFLNTITTSRCS 133
             KA L +I+++RCS
Sbjct:   114 KALLWSISSARCS 126

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013698 AT1G29500 "AT1G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 56/133 (42%), Positives = 92/133 (69%)

Query:     1 MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
             M+++K+LIK+ RK Q  A++ R+RIS  R ++            S+  EKG FV+YT D 
Sbjct:     1 MMNTKKLIKMFRKWQQRAALHRKRISFQRPSTR-----------STTVEKGCFVVYTADN 49

Query:    61 RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRGIDSEGVQ 120
              R+  P++YL++S+F E+L++SEEE+GL + GPITLP D+VF++ ++  I+R +D +  +
Sbjct:    50 TRFAFPISYLSNSVFQEILEISEEEFGLPTGGPITLPFDSVFLEYLIKLIKRRMDGD-TE 108

Query:   121 KAFLNTITTSRCS 133
             KA L +I+++RCS
Sbjct:   109 KALLMSISSARCS 121

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2013653 AT1G29490 "AT1G29490" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 50/101 (49%), Positives = 75/101 (74%)

Query:     1 MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTDQ 60
             M+++K+L+K+A+K Q  A++ R+RIS  R+NST         SSSS  EKG FV+YT DQ
Sbjct:     1 MMNTKKLMKMAKKWQQRAALRRKRISFQRSNSTT--------SSSSAVEKGCFVVYTADQ 52

Query:    61 RRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAV 101
              R+  P++YL++S+  ELLK+SEEE+G+ ++GPITLP D++
Sbjct:    53 VRFAFPISYLSNSVIQELLKISEEEFGIPTEGPITLPFDSI 93

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2199819 AT1G76190 "AT1G76190" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 38/104 (36%), Positives = 64/104 (61%)

Query:    49 EKGHFVIYTTDQRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVS 108
             +KGHF +YT + +R+VLPL YLN  +   LL+++E+E+G   DGP+ +PCD   MD ++ 
Sbjct:    22 KKGHFAVYTNEGKRFVLPLDYLNHPMLQVLLQMAEDEFGTTIDGPLKVPCDGSLMDHIIM 81

Query:   109 FIQRGI--DSEGVQKAFLNTITTSRCSFPDTFRQGYTGQHAVVS 150
              ++R +  D + V+K+  ++ T    S    FR G +   ++VS
Sbjct:    82 LVRRSMSHDYDDVEKSSTSS-TCKGASISSLFR-GQSQLQSLVS 123

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	5e-27
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	2e-12
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-11
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	2e-08

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 96.6 bits (241), Expect = 5e-27
 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 14/112 (12%)

Query: 1   MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTD- 59
           M S  +    A+K  + A+ GR R S               KSSS+   KGHF +Y  + 
Sbjct: 1   MASRLKKASSAKKWILSAASGRSRGSSS-------------KSSSADVPKGHFAVYVGEE 47

Query: 60  QRRYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQ 111
            RR+V+P++YLN  +F ELL  +EEE+G   DG +T+PCD V  + ++  ++
Sbjct: 48  TRRFVVPISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 50  KGHFVIYTTDQR-RYVLPLTYLNSSIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVS 108
           KGHF +Y  + R RY++P+++L    F  LL+ +EEE+G   D  +T+PC+ V    + S
Sbjct: 42  KGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTS 101

Query: 109 FI 110
            I
Sbjct: 102 MI 103

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 56.7 bits (136), Expect = 2e-11
 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 10/85 (11%)

Query: 37  LGSHNKSSSSVAE---KGHFVIYTTDQ-----RRYVLPLTYLNSSIFLELLKLSEEEYGL 88
           L + N++SSS ++   KGH  +Y  +Q     +R+V+P+++LN   F E L  +EEE+G 
Sbjct: 21  LANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF 80

Query: 89  KSD-GPITLPC-DAVFMDLVVSFIQ 111
               G +T+PC + VF+DL+ S + 
Sbjct: 81  NHPMGGLTIPCREEVFLDLIASRLH 105

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 5/75 (6%)

Query: 39  SHNKSSSSVAEKGHFVIYTTDQ---RRYVLPLTYLNSSIFLELLKLSEEEYGL-KSDGPI 94
           S + ++S +  KGH  +Y  +Q   +R+V+P++YLN  +F E L  +EEE G   S G +
Sbjct: 30  SSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGL 89

Query: 95  TLPC-DAVFMDLVVS 108
           T+PC +  F+ L+ S
Sbjct: 90  TIPCREESFLHLITS 104

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.97
PLN03220	105	uncharacterized protein; Provisional	99.97
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	82.4

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=2.1e-37  Score=228.37  Aligned_cols=99  Identities=39%  Similarity=0.709  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHHHHHHhhhcCCCccccCCCCCccccCCCCCCCCCCCCCCCeEEEEecc-ceeeeeeccCcCcHHHHHHH
Q 043987            1 MISSKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTD-QRRYVLPLTYLNSSIFLELL   79 (152)
Q Consensus         1 m~s~~kL~~~~kKWqk~aa~~rk~~s~~~~~~~~~~~~~~~s~~~~~vpkG~~~VYVGe-~~RfvVp~~yL~hP~F~~LL   79 (152)
                      ||+.+|..+.++||++.++.++++.+...+            .+...+|+||||||||+ ++||+||++|||||+|++||
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~------------~~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL   68 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRS------------SSESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELL   68 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhcccccccccc------------cccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHH
Confidence            999999999999999987666554432111            11357899999999997 99999999999999999999


Q ss_pred             HhhHHhcCCCCCCCccccCcHHHHHHHHHHHH
Q 043987           80 KLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQ  111 (152)
Q Consensus        80 ~~seeEfG~~~~G~L~IPCd~~~Fe~vl~~l~  111 (152)
                      ++|||||||+++|+|+||||+++|++++|+|+
T Consensus        69 ~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   69 EQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             HHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=7.5e-36  Score=222.27  Aligned_cols=91  Identities=26%  Similarity=0.552  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHhhhcCCCccccCCCCCccccCCCCCCCCCCCCCCCeEEEEecc-ceeeeeeccCcCcHHHHHHHHhh
Q 043987            4 SKRLIKLARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTD-QRRYVLPLTYLNSSIFLELLKLS   82 (152)
Q Consensus         4 ~~kL~~~~kKWqk~aa~~rk~~s~~~~~~~~~~~~~~~s~~~~~vpkG~~~VYVGe-~~RfvVp~~yL~hP~F~~LL~~s   82 (152)
                      .++|++|+|||+++++.+   .     .      + + ...+.++|+||||||||+ ++||+||++|||||+|++||++|
T Consensus        12 ~~~~kq~l~r~~s~~~~~---~-----~------~-~-~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~a   75 (104)
T PLN03090         12 TAMLKQILKRCSSLGKKQ---G-----Y------D-E-DGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQA   75 (104)
T ss_pred             HHHHHHHHHHHHHhcccC---C-----c------c-c-ccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHH
Confidence            578999999999875322   1     0      1 0 123667999999999997 68999999999999999999999


Q ss_pred             HHhcCCCCCCCccccCcHHHHHHHHHHH
Q 043987           83 EEEYGLKSDGPITLPCDAVFMDLVVSFI  110 (152)
Q Consensus        83 eeEfG~~~~G~L~IPCd~~~Fe~vl~~l  110 (152)
                      ||||||+++|+|+||||+++|++++|+|
T Consensus        76 eeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         76 EEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             HHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            9999999999999999999999999998

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=3e-31  Score=198.54  Aligned_cols=90  Identities=27%  Similarity=0.532  Sum_probs=72.8

Q ss_pred             HHHHHHhhhcCCCccccCCCCCccccCCCCCCCCCCCCCCCeEEEEecc---ceeeeeeccCcCcHHHHHHHHhhHHhcC
Q 043987           11 ARKSQMIASMGRERISLPRTNSTDYHLGSHNKSSSSVAEKGHFVIYTTD---QRRYVLPLTYLNSSIFLELLKLSEEEYG   87 (152)
Q Consensus        11 ~kKWqk~aa~~rk~~s~~~~~~~~~~~~~~~s~~~~~vpkG~~~VYVGe---~~RfvVp~~yL~hP~F~~LL~~seeEfG   87 (152)
                      -+-|+...-.+|+..+.+...          ++.+..+||||||||||+   ++||+||++|||||+|++||++||||||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfG   81 (108)
T PLN03219         12 KQIFKSQSMRNKNGSSSPSSS----------TTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECG   81 (108)
T ss_pred             HHHHHHHHHhcccCCCCCccC----------CCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence            355775555566544432222          122568999999999996   7999999999999999999999999999


Q ss_pred             CCC-CCCccccCcHHHHHHHHHHH
Q 043987           88 LKS-DGPITLPCDAVFMDLVVSFI  110 (152)
Q Consensus        88 ~~~-~G~L~IPCd~~~Fe~vl~~l  110 (152)
                      |++ +|+|+||||++.|++++..-
T Consensus        82 f~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         82 FHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCEEEeCCHHHHHHHHHhh
Confidence            997 69999999999999999653

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=1.4e-30  Score=194.16  Aligned_cols=64  Identities=33%  Similarity=0.711  Sum_probs=60.5

Q ss_pred             CCCCCCCeEEEEecc-----ceeeeeeccCcCcHHHHHHHHhhHHhcCCCC-CCCccccCcHHHHHHHHH
Q 043987           45 SSVAEKGHFVIYTTD-----QRRYVLPLTYLNSSIFLELLKLSEEEYGLKS-DGPITLPCDAVFMDLVVS  108 (152)
Q Consensus        45 ~~~vpkG~~~VYVGe-----~~RfvVp~~yL~hP~F~~LL~~seeEfG~~~-~G~L~IPCd~~~Fe~vl~  108 (152)
                      +.+|||||||||||+     ++||+||+.|||||+|++||++|||||||++ +|+|+||||++.|++++.
T Consensus        32 ~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         32 SDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             cCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            567999999999996     6999999999999999999999999999998 699999999999999985

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=82.40  E-value=0.61  Score=32.47  Aligned_cols=54  Identities=13%  Similarity=0.243  Sum_probs=40.1

Q ss_pred             ceeeeeeccCcC-c--HHHHHHHHhhHHhcCCCCCCCccccCcHHHHHHHHHHHHcC
Q 043987           60 QRRYVLPLTYLN-S--SIFLELLKLSEEEYGLKSDGPITLPCDAVFMDLVVSFIQRG  113 (152)
Q Consensus        60 ~~RfvVp~~yL~-h--P~F~~LL~~seeEfG~~~~G~L~IPCd~~~Fe~vl~~l~~~  113 (152)
                      +++|.++.+.|. +  ..|..++........-..+|.+-|-++...|++||..++.+
T Consensus         7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            567888877776 4  37888887652222224689999999999999999999995

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00