Citrus Sinensis ID: 044014

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGKRKKVPQ
Secondary Structure (PSIPRED)
ccEEccEEEEEccccccccccccccccEEEcccccccccccEEEEEcccHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccEEEEEccccccccccccccEEEEEEEcHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEcccccccEccccccEEEcccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcEEEEccccHHccccccccccEEEEEEcHHHcccccccc
Coil and Loop (DISEMBL)
MNILRHCIIniipsnetlldlepfnrmwhlsengescgqFDVIIIARNGKCANRLLRMQLSSIWTLLaasedprllgsaasfkaPLLKAVSWMadnpgklfrsqsdvphcwtffstaaygkrkkvpq
Flexible Loop (DISEMBL)
MNILRHCIIniipsnetlldLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNPGKLFRSQSDVPHCWTFfstaaygkrkkvpq
Low Complexity Region (SEG)
MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGKRKKVPQ
Disordered region (IsUnstruct)
**ILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNPGKLFRSQSDVPHCWTFFSTAAY********
Disordered Region (DISOPRED)
**ILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMA**************HCWTFFSTAAYG*******
Disordered Region (DISEMBL)
MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGKRKKVPQ
Disordered Region (DISPRO)
MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGKR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLLRMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGKRKKVPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
224130614	496	predicted protein [Populus trichocarpa]	0.929	0.237	0.527	1e-32
255580905	467	conserved hypothetical protein [Ricinus	0.834	0.226	0.604	2e-31
449443231	545	PREDICTED: uncharacterized protein LOC10	0.929	0.216	0.513	1e-30
449483109	536	PREDICTED: uncharacterized protein LOC10	0.929	0.220	0.513	1e-30
147823103	2691	hypothetical protein VITISV_000598 [Viti	0.921	0.043	0.5	2e-28
225463946	467	PREDICTED: uncharacterized protein LOC10	0.921	0.250	0.492	2e-28
296087896	518	unnamed protein product [Vitis vinifera]	0.921	0.225	0.492	2e-28
18396966	486	FAD/NAD(P)-binding oxidoreductase domain	0.897	0.234	0.496	5e-27
297828968	485	oxidoreductase [Arabidopsis lyrata subsp	0.889	0.232	0.496	6e-27
115489414	497	Os12g0597400 [Oryza sativa Japonica Grou	0.929	0.237	0.479	2e-26

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/144 (52%), Positives = 93/144 (64%), Gaps = 26/144 (18%)

Query: 1   MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL---- 56
           +N++R C I+          LEPFN MWHLSENG+ CGQFD+I+IA NGKCANRLL    
Sbjct: 222 VNVVRPCWIS---------KLEPFNGMWHLSENGKPCGQFDIIVIAHNGKCANRLLASSG 272

Query: 57  ---------RMQLSSIWTLLAASEDPRLLGSAAS-FKAPLLKAV---SWMADNPGKLFRS 103
                     + LSSIW LLAA EDP  + + A+ F+   +K V   SWM +N  KL  S
Sbjct: 273 LPLIARQMKTLGLSSIWALLAAFEDPLPIPTGATPFEGAFVKGVDSLSWMGNNSAKLLGS 332

Query: 104 QSDVPHCWTFFSTAAYGKRKKVPQ 127
           +++ PHCWTFFSTAAYGKR KVPQ
Sbjct: 333 KTNSPHCWTFFSTAAYGKRNKVPQ 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580905|ref|XP_002531271.1| conserved hypothetical protein [Ricinus communis] gi|223529104|gb|EEF31084.1| conserved hypothetical protein [Ricinus communis]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 86/124 (69%), Gaps = 18/124 (14%)

Query: 21  LEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL-------------RMQLSSIWTLL 67
           LEPFN MWHLSENG+ CGQFDVI+IA NGKCANRLL             ++ LS IW LL
Sbjct: 209 LEPFNGMWHLSENGKPCGQFDVIVIAHNGKCANRLLASSGLPLIARQMKKLDLSPIWALL 268

Query: 68  AASEDPRLLGSAAS-FKAPLLKAV---SWMADNPGKLFRSQSDVPHCWTFFSTAAYGKRK 123
           AA E+P  + S AS F+   +K V   SWM +N  KLF SQS+ PHCWTFFSTAA+GKR 
Sbjct: 269 AAFEEPLPIPSGASPFEGAFVKGVDSISWMGNNSMKLF-SQSNGPHCWTFFSTAAFGKRN 327

Query: 124 KVPQ 127
           KVPQ
Sbjct: 328 KVPQ 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443231|ref|XP_004139383.1| PREDICTED: uncharacterized protein LOC101219713 [Cucumis sativus]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 87/146 (59%), Gaps = 28/146 (19%)

Query: 1   MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL---- 56
           +N++R C I+          LEPFN MWHLSENG+ CG FD I+IA NGKCANRLL    
Sbjct: 224 INVIRPCWIS---------KLEPFNGMWHLSENGKPCGHFDAIVIAHNGKCANRLLSTSG 274

Query: 57  ---------RMQLSSIWTLLAASEDPRLLGSAAS---FKAPLLKAV---SWMADNPGKLF 101
                    R++LSSIW LLAA EDP      A    F+   +K V   SWMA+N  K  
Sbjct: 275 LPLIARQMKRLELSSIWALLAAFEDPLPFPDTAEKFPFEGAFVKGVDSLSWMANNNKKFL 334

Query: 102 RSQSDVPHCWTFFSTAAYGKRKKVPQ 127
             Q D PHCWTF STAAYGK+ KVPQ
Sbjct: 335 NFQKDGPHCWTFLSTAAYGKQNKVPQ 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483109|ref|XP_004156495.1| PREDICTED: uncharacterized protein LOC101226129 [Cucumis sativus]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 87/146 (59%), Gaps = 28/146 (19%)

Query: 1   MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL---- 56
           +N++R C I+          LEPFN MWHLSENG+ CG FD I+IA NGKCANRLL    
Sbjct: 224 INVIRPCWIS---------KLEPFNGMWHLSENGKPCGHFDAIVIAHNGKCANRLLSTSG 274

Query: 57  ---------RMQLSSIWTLLAASEDPRLLGSAAS---FKAPLLKAV---SWMADNPGKLF 101
                    R++LSSIW LLAA EDP      A    F+   +K V   SWMA+N  K  
Sbjct: 275 LPLIARQMKRLELSSIWALLAAFEDPLPFPDTAEKFPFEGAFVKGVDSLSWMANNNKKFL 334

Query: 102 RSQSDVPHCWTFFSTAAYGKRKKVPQ 127
             Q D PHCWTF STAAYGK+ KVPQ
Sbjct: 335 NFQKDGPHCWTFLSTAAYGKQNKVPQ 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823103|emb|CAN66330.1| hypothetical protein VITISV_000598 [Vitis vinifera]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 88/140 (62%), Gaps = 23/140 (16%)

Query: 1   MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL---- 56
           +N++R C I+          L+PFN MWHLSENG+  GQ+D I+IA NGKCAN LL    
Sbjct: 513 VNVVRPCWIS---------KLDPFNGMWHLSENGKPHGQYDAIVIAHNGKCANHLLASSG 563

Query: 57  ---------RMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNPGKLFRSQSDV 107
                    +++LSSIW LLAA EDP  +    +F    + ++SWMA+N  KL  S S  
Sbjct: 564 LPLVARQMKKLELSSIWALLAAFEDPLPIPFEGAF-VKGVDSISWMANNTKKLLHSLSSG 622

Query: 108 PHCWTFFSTAAYGKRKKVPQ 127
           PHCWTFFSTAA+GKR KVPQ
Sbjct: 623 PHCWTFFSTAAFGKRNKVPQ 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 87/140 (62%), Gaps = 23/140 (16%)

Query: 1   MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL---- 56
           +N++R C I+          L+PFN MWHLSENG+  GQ+D I+IA NGKCAN LL    
Sbjct: 198 VNVVRPCWIS---------KLDPFNGMWHLSENGKPHGQYDAIVIAHNGKCANHLLASSG 248

Query: 57  ---------RMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNPGKLFRSQSDV 107
                    +++LSSIW LLAA EDP  +    +F    + ++SWMA+N  KL  S    
Sbjct: 249 LPLVARQMKKLELSSIWALLAAFEDPLPIPFEGAF-VKGVDSISWMANNTKKLLHSLGSG 307

Query: 108 PHCWTFFSTAAYGKRKKVPQ 127
           PHCWTFFSTAA+GKR KVPQ
Sbjct: 308 PHCWTFFSTAAFGKRNKVPQ 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 87/140 (62%), Gaps = 23/140 (16%)

Query: 1   MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL---- 56
           +N++R C I+          L+PFN MWHLSENG+  GQ+D I+IA NGKCAN LL    
Sbjct: 198 VNVVRPCWIS---------KLDPFNGMWHLSENGKPHGQYDAIVIAHNGKCANHLLASSG 248

Query: 57  ---------RMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAVSWMADNPGKLFRSQSDV 107
                    +++LSSIW LLAA EDP  +    +F    + ++SWMA+N  KL  S    
Sbjct: 249 LPLVARQMKKLELSSIWALLAAFEDPLPIPFEGAF-VKGVDSISWMANNTKKLLHSLGSG 307

Query: 108 PHCWTFFSTAAYGKRKKVPQ 127
           PHCWTFFSTAA+GKR KVPQ
Sbjct: 308 PHCWTFFSTAAFGKRNKVPQ 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396966|ref|NP_566235.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|6175169|gb|AAF04895.1|AC011437_10 unknown protein [Arabidopsis thaliana] gi|15215628|gb|AAK91359.1| AT3g04650/F7O18_13 [Arabidopsis thaliana] gi|28416461|gb|AAO42761.1| At3g04650/F7O18_13 [Arabidopsis thaliana] gi|332640593|gb|AEE74114.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana]

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 86/143 (60%), Gaps = 29/143 (20%)

Query: 1   MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL---- 56
           +N++R C I+          LEP N MWHLSENG   GQFDVI+IA NGKCANRLL    
Sbjct: 218 VNLVRPCWIS---------KLEPLNGMWHLSENGTPRGQFDVIVIAHNGKCANRLLSASG 268

Query: 57  ---------RMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAV---SWMADNPGKLFRSQ 104
                    ++ LSSIW LLAA +DP       +F+   +K V   SWM +N  KL   +
Sbjct: 269 LPLVAKQMKKLDLSSIWALLAAFDDPL---PTVNFEGAFVKGVESLSWMGNNSAKLGNGR 325

Query: 105 SDVPHCWTFFSTAAYGKRKKVPQ 127
           +  PHCWTFFSTAAYGK+ KVPQ
Sbjct: 326 TP-PHCWTFFSTAAYGKQNKVPQ 347

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828968|ref|XP_002882366.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297328206|gb|EFH58625.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 86/143 (60%), Gaps = 30/143 (20%)

Query: 1   MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL---- 56
           +N++R C I+          LEP N MWHLSENG   GQFDVI+IA NGKCANRLL    
Sbjct: 218 VNLVRPCWIS---------KLEPLNGMWHLSENGTPRGQFDVIVIAHNGKCANRLLSASG 268

Query: 57  ---------RMQLSSIWTLLAASEDPRLLGSAASFKAPLLKAV---SWMADNPGKLFRSQ 104
                    ++ LSSIW LLAA +DP       +F+   +K V   SWM +N  KL   +
Sbjct: 269 LPLVAKQMKKLDLSSIWALLAAFDDPL---PTVNFEGAFVKGVESLSWMGNNSAKLGNGR 325

Query: 105 SDVPHCWTFFSTAAYGKRKKVPQ 127
           +  PHCWTFFSTAAYGK+ KVPQ
Sbjct: 326 N--PHCWTFFSTAAYGKQNKVPQ 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489414|ref|NP_001067194.1| Os12g0597400 [Oryza sativa Japonica Group] gi|77556443|gb|ABA99239.1| expressed protein [Oryza sativa Japonica Group] gi|113649701|dbj|BAF30213.1| Os12g0597400 [Oryza sativa Japonica Group] gi|215701342|dbj|BAG92766.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 87/146 (59%), Gaps = 28/146 (19%)

Query: 1   MNILRHCIINIIPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL---- 56
           + ++R C I+          LEPFN +W L EN +  GQ+D I+IA NGKCANRLL    
Sbjct: 221 IEVVRPCWIS---------KLEPFNGLWRLFENEKPHGQYDAIVIAHNGKCANRLLSTSG 271

Query: 57  ---------RMQLSSIWTLLAASEDPRLL---GSAASFKAPLLKAV---SWMADNPGKLF 101
                    R+QLSS+W LLAA +DP  +    S  +F+   +K V   SWMA+N  KLF
Sbjct: 272 LPLLTRQMKRLQLSSVWALLAAFQDPLPIPQTDSYGTFEGAFVKDVDSLSWMANNTQKLF 331

Query: 102 RSQSDVPHCWTFFSTAAYGKRKKVPQ 127
             Q+  P CWTFFSTAAYGKR KVPQ
Sbjct: 332 PLQTGRPECWTFFSTAAYGKRNKVPQ 357

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	0.811	0.211	0.544	1.3e-26

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 1.3e-26, P = 1.3e-26
 Identities = 67/123 (54%), Positives = 78/123 (63%)

Query:    21 LEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL-------------RMQLSSIWTLL 67
             LEP N MWHLSENG   GQFDVI+IA NGKCANRLL             ++ LSSIW LL
Sbjct:   229 LEPLNGMWHLSENGTPRGQFDVIVIAHNGKCANRLLSASGLPLVAKQMKKLDLSSIWALL 288

Query:    68 AASEDPRLLGSAASFKAPLLKAV---SWMADNPGKLFRSQSDVPHCWTFFSTAAYGKRKK 124
             AA +DP       +F+   +K V   SWM +N  KL   ++  PHCWTFFSTAAYGK+ K
Sbjct:   289 AAFDDPL---PTVNFEGAFVKGVESLSWMGNNSAKLGNGRTP-PHCWTFFSTAAYGKQNK 344

Query:   125 VPQ 127
             VPQ
Sbjct:   345 VPQ 347


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      127       127   0.00091  102 3  11 22  0.49    30
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  145 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.70u 0.10s 12.80t   Elapsed:  00:00:01
  Total cpu time:  12.70u 0.10s 12.80t   Elapsed:  00:00:01
  Start:  Sat May 11 04:31:22 2013   End:  Sat May 11 04:31:23 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.94
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.61
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	98.59
PLN02576	496	protoporphyrinogen oxidase	98.27
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.11
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.65
PLN02268	435	probable polyamine oxidase	96.55
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.43
PRK07233	434	hypothetical protein; Provisional	96.23
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	95.98
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.91
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	95.77
PLN02529	738	lysine-specific histone demethylase 1	95.64
PLN02612	567	phytoene desaturase	93.99
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	93.56
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	93.05
COG2907	447	Predicted NAD/FAD-binding protein [General functio	92.33
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	90.95
PRK07208	479	hypothetical protein; Provisional	89.97
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	89.59
PLN02568	539	polyamine oxidase	89.39
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	88.35
PLN02487	569	zeta-carotene desaturase	84.78
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	83.14
PLN03000	881	amine oxidase	80.18
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	80.07
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	80.06

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.94  E-value=2.9e-27  Score=194.41  Aligned_cols=106  Identities=14%  Similarity=0.328  Sum_probs=98.1

Q ss_pred             cCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------------hccccceeeeeeeccCCCC
Q 044014           13 PSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------------RMQLSSIWTLLAASEDPRL   75 (127)
Q Consensus        13 ~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------------~~~~~pcWalm~af~~pl~   75 (127)
                      =.+|+|+++.+.++.|+|. ++|..+++||.||||.|+||+..||                .+.|.|||++|+.|++||+
T Consensus       121 ~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~  200 (331)
T COG3380         121 VLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLD  200 (331)
T ss_pred             hhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCC
Confidence            3589999999999999998 7899999999999999999999998                5579999999999999999


Q ss_pred             CCCcccccccccc--ceeEEEeCCCCCCCCCCCCCcEEEEEeChhhhhhcC
Q 044014           76 LGSAASFKAPLLK--AVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGKRKK  124 (127)
Q Consensus        76 ~~~~~~~dga~v~--~LsWiarnssKPGR~~r~~~e~WVlhAt~~wS~~Hk  124 (127)
                      .|    ++|.|+.  +|.|++||.|||||.  ...|.||+||+|+||++|.
T Consensus       201 ~P----~~G~~vdg~~laWla~d~sK~g~~--p~~~~~vvqasp~wSr~h~  245 (331)
T COG3380         201 RP----WPGNFVDGHPLAWLARDASKKGHV--PDGEIWVVQASPDWSREHL  245 (331)
T ss_pred             CC----CCCcccCCCeeeeeeccccCCCCC--CcCceEEEEeCchHHHHhh
Confidence            99    9999988  999999999999953  4578999999999999996

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.61  E-value=3.6e-07  Score=76.45  Aligned_cols=103  Identities=13%  Similarity=0.081  Sum_probs=74.5

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH------------hccccceeeeeeeccCC-CCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL------------RMQLSSIWTLLAASEDP-RLLG   77 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll------------~~~~~pcWalm~af~~p-l~~~   77 (127)
                      |=.+++|.+|++.+++|.+. .+|+ .-.||+||+|+|++++..|+            ++.+.||+.+++.|+++ +..+
T Consensus       240 i~~~~~V~~I~~~~~~~~v~~~~g~-~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~  318 (462)
T TIGR00562       240 VYKGTKVTKLSHRGSNYTLELDNGV-TVETDSVVVTAPHKAAAGLLSELSNSASSHLDKIHSPPVANVNLGFPEGSVDGE  318 (462)
T ss_pred             EEcCCeEEEEEecCCcEEEEECCCc-EEEcCEEEECCCHHHHHHHhcccCHHHHHHHhcCCCCceEEEEEEEchHHcCCC
Confidence            44689999999999999997 6664 34679999999999999987            45689999999999875 3322


Q ss_pred             Ccccccc--ccc------cceeEEEeCCCCCCCCCCCCCcEEEEEeChhhh
Q 044014           78 SAASFKA--PLL------KAVSWMADNPGKLFRSQSDVPHCWTFFSTAAYG  120 (127)
Q Consensus        78 ~~~~~dg--a~v------~~LsWiarnssKPGR~~r~~~e~WVlhAt~~wS  120 (127)
                          .++  ..+      ..+.|+..++.+|++. .++...++++.+..++
T Consensus       319 ----~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~-p~g~~~l~~~~~g~~~  364 (462)
T TIGR00562       319 ----LEGFGFLISRSSKFAILGCIFTSKLFPNRA-PPGKTLLTAYIGGATD  364 (462)
T ss_pred             ----CCceEEEccCCCCCceEEEEEEccccCCcC-CCCcEEEEEEeCCCCC
Confidence                222  111      1589999888888853 2233356666665443

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=98.59  E-value=5.3e-07  Score=73.31  Aligned_cols=100  Identities=15%  Similarity=0.068  Sum_probs=74.1

Q ss_pred             ecCCceEEEEEecCCceEEe--cCCCccCCCcEEEEccChHhHHHHH----------hccccceeeeeeeccCCCCCCCc
Q 044014           12 IPSNETLLDLEPFNRMWHLS--ENGESCGQFDVIIIARNGKCANRLL----------RMQLSSIWTLLAASEDPRLLGSA   79 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~--~~g~~~G~FD~VVvA~Pa~QA~~Ll----------~~~~~pcWalm~af~~pl~~~~~   79 (127)
                      |=.+++|.+|+..++++.+.  .+|+ ...+|+||+|+|++++..||          ..++.||+.+++.|++|...+  
T Consensus       214 i~~~~~V~~i~~~~~~~~~~~~~~g~-~~~~d~vi~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~--  290 (419)
T TIGR03467       214 VRLGTRVRSIEANAGGIRALVLSGGE-TLPADAVVLAVPPRHAASLLPGEDLGALLTALGYSPITTVHLRLDRAVRLP--  290 (419)
T ss_pred             EEcCCeeeEEEEcCCcceEEEecCCc-cccCCEEEEcCCHHHHHHhCCCchHHHHHhhcCCcceEEEEEEeCCCcCCC--
Confidence            45789999999999886653  3443 45689999999999999987          346789999999999987433  


Q ss_pred             cccccc-ccc-ceeEEEeCCCCCCCCCCCCCcEEEEEeChhh
Q 044014           80 ASFKAP-LLK-AVSWMADNPGKLFRSQSDVPHCWTFFSTAAY  119 (127)
Q Consensus        80 ~~~dga-~v~-~LsWiarnssKPGR~~r~~~e~WVlhAt~~w  119 (127)
                        .+.. +.. +..|+.+++.|++   ..+..+++++...++
T Consensus       291 --~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  327 (419)
T TIGR03467       291 --APMVGLVGGLAQWLFDRGQLAG---EPGYLAVVISAARDL  327 (419)
T ss_pred             --CCeeeecCCceeEEEECCcCCC---CCCEEEEEEecchhh
Confidence              2221 123 7899999888887   335556777765544

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02576 protoporphyrinogen oxidase

Probab=98.27  E-value=7.9e-06  Score=69.38  Aligned_cols=92  Identities=9%  Similarity=0.043  Sum_probs=66.3

Q ss_pred             ecCCceEEEEEecCCc-eEEe-c--CCCccCCCcEEEEccChHhHHHHH------------hccccceeeeeeeccCCC-
Q 044014           12 IPSNETLLDLEPFNRM-WHLS-E--NGESCGQFDVIIIARNGKCANRLL------------RMQLSSIWTLLAASEDPR-   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~-W~L~-~--~g~~~G~FD~VVvA~Pa~QA~~Ll------------~~~~~pcWalm~af~~pl-   74 (127)
                      |=.+++|.+|++.+++ |.+. .  +|+....||+||+|+|++++..|+            .+.+.||+.+++.|+++. 
T Consensus       254 i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~  333 (496)
T PLN02576        254 VKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKSPAAADALPEFYYPPVAAVTTSYPKEAV  333 (496)
T ss_pred             EEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccCHHHHHHhccCCCCceEEEEEEEchHHc
Confidence            5579999999999886 9886 3  343346789999999999999987            446889999999998853 


Q ss_pred             CC-C-Ccccccccc--c------cceeEEEeCCCCCCCC
Q 044014           75 LL-G-SAASFKAPL--L------KAVSWMADNPGKLFRS  103 (127)
Q Consensus        75 ~~-~-~~~~~dga~--v------~~LsWiarnssKPGR~  103 (127)
                      .. . .+..+++..  +      +.+.|+.+++.+|+|.
T Consensus       334 ~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~  372 (496)
T PLN02576        334 KRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRA  372 (496)
T ss_pred             ccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCC
Confidence            21 0 000022221  1      1478999999999853

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.11  E-value=2.9e-05  Score=64.35  Aligned_cols=105  Identities=12%  Similarity=0.059  Sum_probs=74.0

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------hccccceeeeeeeccCCCCCCCcc
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------RMQLSSIWTLLAASEDPRLLGSAA   80 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------~~~~~pcWalm~af~~pl~~~~~~   80 (127)
                      |=.+++|.+++..+++|.+. .+|+ ...||.||+|+|..++.+|+          ++.+.++..+++.|+++.+..  .
T Consensus       236 i~~~~~V~~i~~~~~~~~v~~~~g~-~~~~d~vI~a~p~~~~~~l~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~--~  312 (451)
T PRK11883        236 IHKGTPVTKIDKSGDGYEIVLSNGG-EIEADAVIVAVPHPVLPSLFVAPPAFALFKTIPSTSVATVALAFPESATNL--P  312 (451)
T ss_pred             EEeCCEEEEEEEcCCeEEEEECCCC-EEEcCEEEECCCHHHHHHhccChhHHHHHhCCCCCceEEEEEEeccccCCC--C
Confidence            56789999999999999987 6664 35789999999999999987          456889999999999985211  0


Q ss_pred             cccccccc-----ceeEEEeCCCCC-CCCCCCCCcEEEEEeChhhhh
Q 044014           81 SFKAPLLK-----AVSWMADNPGKL-FRSQSDVPHCWTFFSTAAYGK  121 (127)
Q Consensus        81 ~~dga~v~-----~LsWiarnssKP-GR~~r~~~e~WVlhAt~~wS~  121 (127)
                      ...+.++.     ++.++..++.|. ++.  .++...+.+....|..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--p~g~~~~~~~~~~~~~  357 (451)
T PRK11883        313 DGTGFLVARNSDYTITACTWTSKKWPHTT--PEGKVLLRLYVGRPGD  357 (451)
T ss_pred             CceEEEecCCCCCcEEEEEeEcCcCCCCC--CCCcEEEEEecCCCCC
Confidence            02233222     466777777773 321  2234677777766643

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.65  E-value=0.00038  Score=58.73  Aligned_cols=61  Identities=20%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------hccccceeeeeeeccCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------RMQLSSIWTLLAASEDP   73 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------~~~~~pcWalm~af~~p   73 (127)
                      |=.+++|.++++.+++|.+. .+|+. -.+|.||+|+|.+++..|+          +..+.+|..+++.|+.+
T Consensus       241 i~~~~~V~~I~~~~~~~~v~~~~g~~-~~ad~VI~a~p~~~~~~ll~~~~l~~~~~~~~~~~~~~v~l~~~~~  312 (463)
T PRK12416        241 VKKGAVTTAVSKQGDRYEISFANHES-IQADYVVLAAPHDIAETLLQSNELNEQFHTFKNSSLISIYLGFDIL  312 (463)
T ss_pred             EEcCCEEEEEEEcCCEEEEEECCCCE-EEeCEEEECCCHHHHHhhcCCcchhHHHhcCCCCceEEEEEEechh
Confidence            45799999999999999997 56643 4679999999999999988          34578999999999965

>PLN02268 probable polyamine oxidase

Probab=96.55  E-value=0.027  Score=47.07  Aligned_cols=101  Identities=10%  Similarity=0.023  Sum_probs=66.3

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------------hccccceeeeeeeccCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------------RMQLSSIWTLLAASEDPR   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------------~~~~~pcWalm~af~~pl   74 (127)
                      |=.++.|.++.+.+++|.+. .+|+. -.+|.||+|+|..++.+++                +..|.++.-+++.|+++.
T Consensus       213 i~~~~~V~~i~~~~~~v~v~~~~g~~-~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~f  291 (435)
T PLN02268        213 IRLNHRVTKIVRRYNGVKVTVEDGTT-FVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVF  291 (435)
T ss_pred             eeCCCeeEEEEEcCCcEEEEECCCcE-EEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCC
Confidence            56789999999999999998 66643 3679999999999986532                446778999999999974


Q ss_pred             CCCCcccccccccc---ceeEEEeCCCCCCCCCCCCCcEEEEEeChhhhh
Q 044014           75 LLGSAASFKAPLLK---AVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGK  121 (127)
Q Consensus        75 ~~~~~~~~dga~v~---~LsWiarnssKPGR~~r~~~e~WVlhAt~~wS~  121 (127)
                      -..  ..+-|....   ...|..+.+.++|      ....+.+.+.++++
T Consensus       292 w~~--~~~~g~~~~~~~~~~~~~~~~~~~g------~~~l~~~~~g~~a~  333 (435)
T PLN02268        292 WPN--VEFLGVVAPTSYGCSYFLNLHKATG------HPVLVYMPAGRLAR  333 (435)
T ss_pred             CCC--CceeeccCCCCCCceEEEecccCCC------CCEEEEEeccHHHH
Confidence            321  012222221   3345544333333      22567676665544

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.43  E-value=0.028  Score=52.49  Aligned_cols=102  Identities=7%  Similarity=-0.052  Sum_probs=68.0

Q ss_pred             ecCCceEEEEEecCCceEEecCCCccCCCcEEEEccChHhHHH----HH------------hccccceeeeeeeccCCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANR----LL------------RMQLSSIWTLLAASEDPRL   75 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~Pa~QA~~----Ll------------~~~~~pcWalm~af~~pl~   75 (127)
                      |=.++.|.+|.+.+++|.+..+|+. -.||.||+|+|..+...    +.            ++.+.++.-+++.|+++.-
T Consensus       449 I~ln~~V~~I~~~~dgV~V~~~G~~-~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW  527 (808)
T PLN02328        449 IFYERTVESIRYGVDGVIVYAGGQE-FHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFW  527 (808)
T ss_pred             cccCCeeEEEEEcCCeEEEEeCCeE-EEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence            5679999999999999988755543 46799999999999773    11            5578899999999998743


Q ss_pred             CCCccccccccccceeEEEeCCCCCCCC-------CCCCCcEEEEEeChhhhhh
Q 044014           76 LGSAASFKAPLLKAVSWMADNPGKLFRS-------QSDVPHCWTFFSTAAYGKR  122 (127)
Q Consensus        76 ~~~~~~~dga~v~~LsWiarnssKPGR~-------~r~~~e~WVlhAt~~wS~~  122 (127)
                      -..   .+     .+.++..+.++.|+-       ...+...++.+.+.+++..
T Consensus       528 ~~~---~d-----~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~  573 (808)
T PLN02328        528 GGE---ID-----TFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVK  573 (808)
T ss_pred             cCC---CC-----ceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHH
Confidence            210   11     234444444443310       0123357888877777654

>PRK07233 hypothetical protein; Provisional

Probab=96.23  E-value=0.014  Score=47.98  Aligned_cols=63  Identities=16%  Similarity=0.140  Sum_probs=50.2

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH------------hccccceeeeeeeccCCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL------------RMQLSSIWTLLAASEDPRL   75 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll------------~~~~~pcWalm~af~~pl~   75 (127)
                      |=.+++|.+++.+++++.+. .+|+ ...+|.||+|+|..++.+|+            ...+.++..+.+.|++++.
T Consensus       215 v~~~~~V~~i~~~~~~~~~~~~~~~-~~~ad~vI~a~p~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  290 (434)
T PRK07233        215 IRLGTPVTSVVIDGGGVTGVEVDGE-EEDFDAVISTAPPPILARLVPDLPADVLARLRRIDYQGVVCMVLKLRRPLT  290 (434)
T ss_pred             EEeCCCeeEEEEcCCceEEEEeCCc-eEECCEEEECCCHHHHHhhcCCCcHHHHhhhcccCccceEEEEEEecCCCC
Confidence            45689999999998888764 4443 35589999999999999886            3345699999999999864

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=95.98  E-value=0.02  Score=49.40  Aligned_cols=66  Identities=11%  Similarity=-0.022  Sum_probs=48.4

Q ss_pred             ecCCceEEEEEecC--CceE-E---e-cCCC--ccCCCcEEEEccChHhHHHHH--------------hccccceeeeee
Q 044014           12 IPSNETLLDLEPFN--RMWH-L---S-ENGE--SCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLA   68 (127)
Q Consensus        12 ~~~~t~V~~l~~~~--~~W~-L---~-~~g~--~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~   68 (127)
                      |=.+++|.+|+.++  ++|. +   . .+|+  ..-.+|+||+|+|+.++.+|+              .....||=++-+
T Consensus       236 i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l  315 (474)
T TIGR02732       236 FHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQL  315 (474)
T ss_pred             EECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEE
Confidence            55789999998865  3552 3   2 2231  223579999999999999998              234579999999


Q ss_pred             eccCCCCCC
Q 044014           69 ASEDPRLLG   77 (127)
Q Consensus        69 af~~pl~~~   77 (127)
                      .|+.++..+
T Consensus       316 ~~~~~v~~~  324 (474)
T TIGR02732       316 RYDGWVTEL  324 (474)
T ss_pred             Eeccccccc
Confidence            999877654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.91  E-value=0.012  Score=46.40  Aligned_cols=88  Identities=19%  Similarity=0.190  Sum_probs=62.6

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHH--HH------------hccccceeeeeeeccCCCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANR--LL------------RMQLSSIWTLLAASEDPRLL   76 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~--Ll------------~~~~~pcWalm~af~~pl~~   76 (127)
                      |=.+++|++|+.++++..+. .+|+ .-.||.||+|+|...+..  |.            ...+.+.-.+.+.|+++...
T Consensus       226 i~l~~~V~~I~~~~~~v~v~~~~g~-~~~ad~VI~a~p~~~l~~i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~  304 (450)
T PF01593_consen  226 IRLNTPVTRIEREDGGVTVTTEDGE-TIEADAVISAVPPSVLKNILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWP  304 (450)
T ss_dssp             EESSEEEEEEEEESSEEEEEETTSS-EEEESEEEE-S-HHHHHTSEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGG
T ss_pred             eecCCcceeccccccccccccccce-EEecceeeecCchhhhhhhhhcccccccccccccccccCcceeEEEeeeccccc
Confidence            55789999999999999998 6665 566899999999999985  32            34567777999999987664


Q ss_pred             CCcccccccccc----ceeEEEeCCCCCC
Q 044014           77 GSAASFKAPLLK----AVSWMADNPGKLF  101 (127)
Q Consensus        77 ~~~~~~dga~v~----~LsWiarnssKPG  101 (127)
                      ... .+.+....    .+.++...+.+++
T Consensus       305 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  332 (450)
T PF01593_consen  305 PDI-DFFGILYSDGFSPIGYVSDPSKFPG  332 (450)
T ss_dssp             STT-TESEEEEESSTSSEEEEEEECCTTS
T ss_pred             ccc-cccceecccCccccccccccccCcc
Confidence            300 02222222    4778888888887

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=95.77  E-value=0.02  Score=50.11  Aligned_cols=67  Identities=16%  Similarity=0.146  Sum_probs=51.4

Q ss_pred             ceeeeeeecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------hccccceeeeeeeccCC
Q 044014            5 RHCIINIIPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------RMQLSSIWTLLAASEDP   73 (127)
Q Consensus         5 ~~~~~~~~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------~~~~~pcWalm~af~~p   73 (127)
                      +.+..+ |..++.|+.+.+++.++.+. .+|+. ..||.||+|.|++...+||          .+..++.=++.++|+.+
T Consensus       223 ~~l~~~-i~~~~~V~~i~~~~~~~~~~~~~g~~-~~~D~VI~t~p~~~l~~ll~~~~~~~~~~~~~~~s~~~vv~~~~~~  300 (444)
T COG1232         223 EKLEAK-IRTGTEVTKIDKKGAGKTIVDVGGEK-ITADGVISTAPLPELARLLGDEAVSKAAKELQYTSVVTVVVGLDEK  300 (444)
T ss_pred             HHhhhc-eeecceeeEEEEcCCccEEEEcCCce-EEcceEEEcCCHHHHHHHcCCcchhhhhhhccccceEEEEEEeccc
Confidence            455666 89999999999998777665 44433 6689999999999999999          33444566677788775

>PLN02529 lysine-specific histone demethylase 1

Probab=95.64  E-value=0.12  Score=47.92  Aligned_cols=62  Identities=10%  Similarity=-0.047  Sum_probs=50.1

Q ss_pred             ecCCceEEEEEecCCceEEecCCCccCCCcEEEEccChHhHHHHH----------------hccccceeeeeeeccCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL----------------RMQLSSIWTLLAASEDPR   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~Pa~QA~~Ll----------------~~~~~pcWalm~af~~pl   74 (127)
                      |-.+++|.+|+..+++|.+..+++. -.+|+||+|+|..+...+.                ++.|.++.-+++.|++|.
T Consensus       369 IrLnt~V~~I~~~~dGVtV~t~~~~-~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~F  446 (738)
T PLN02529        369 IFYGKTVDTIKYGNDGVEVIAGSQV-FQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVF  446 (738)
T ss_pred             EEcCCceeEEEEcCCeEEEEECCEE-EEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCcc
Confidence            5579999999999999999844432 3579999999999987431                556789999999999974

>PLN02612 phytoene desaturase

Probab=93.99  E-value=0.22  Score=44.17  Aligned_cols=65  Identities=15%  Similarity=0.060  Sum_probs=48.2

Q ss_pred             ecCCceEEEEEecCCce--EEe-cCCCccCCCcEEEEccChHhHHHHH--------------hccccceeeeeeeccCCC
Q 044014           12 IPSNETLLDLEPFNRMW--HLS-ENGESCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAASEDPR   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W--~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af~~pl   74 (127)
                      |=.+++|.+|+.+++++  .+. .+|+.. .+|.||+|+|...+..|+              .....|+-.+.+.|++|+
T Consensus       325 I~l~~~V~~I~~~~~g~v~~v~~~~G~~~-~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~  403 (567)
T PLN02612        325 VRLNSRIKKIELNDDGTVKHFLLTNGSVV-EGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKL  403 (567)
T ss_pred             EEeCCeeeEEEECCCCcEEEEEECCCcEE-ECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECccc
Confidence            55789999999876663  243 456443 469999999999888876              123557899999999997


Q ss_pred             CCC
Q 044014           75 LLG   77 (127)
Q Consensus        75 ~~~   77 (127)
                      ..+
T Consensus       404 ~~~  406 (567)
T PLN02612        404 KNT  406 (567)
T ss_pred             CCC
Confidence            544

>TIGR02731 phytoene_desat phytoene desaturase

Probab=93.56  E-value=0.27  Score=41.40  Aligned_cols=65  Identities=12%  Similarity=0.018  Sum_probs=46.4

Q ss_pred             ecCCceEEEEEecCCc----eEEe-cCCCc--cCCCcEEEEccChHhHHHHH--------------hccccceeeeeeec
Q 044014           12 IPSNETLLDLEPFNRM----WHLS-ENGES--CGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAAS   70 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~----W~L~-~~g~~--~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af   70 (127)
                      |=.++.|++|+..+++    +.+. ++|+.  .-..|+||+|+|++++.+||              ..++.|+-.+.+.|
T Consensus       230 i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~  309 (453)
T TIGR02731       230 VRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWF  309 (453)
T ss_pred             EeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEE
Confidence            4578999999875543    6664 33321  23459999999999988887              11255899999999


Q ss_pred             cCCCCC
Q 044014           71 EDPRLL   76 (127)
Q Consensus        71 ~~pl~~   76 (127)
                      ++++..
T Consensus       310 ~~~~~~  315 (453)
T TIGR02731       310 DRKLTT  315 (453)
T ss_pred             ccccCC
Confidence            998753

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=93.05  E-value=0.21  Score=36.69  Aligned_cols=39  Identities=13%  Similarity=0.318  Sum_probs=31.1

Q ss_pred             eeeeeeecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEcc
Q 044014            6 HCIINIIPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIAR   47 (127)
Q Consensus         6 ~~~~~~~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~   47 (127)
                      ++.++.+.  .+|..+++.+++|.|. ++|... .||.||+|+
T Consensus       114 ~i~v~~~~--~~V~~i~~~~~~~~v~~~~g~~~-~~d~VvLa~  153 (156)
T PF13454_consen  114 GITVRHVR--AEVVDIRRDDDGYRVVTADGQSI-RADAVVLAT  153 (156)
T ss_pred             CcEEEEEe--eEEEEEEEcCCcEEEEECCCCEE-EeCEEEECC
Confidence            45666664  4899999999999997 777554 889999986

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=92.33  E-value=0.23  Score=43.28  Aligned_cols=44  Identities=25%  Similarity=0.326  Sum_probs=37.3

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL   56 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll   56 (127)
                      |-+++.|.+|.+..+|=.|. .+| ....||.||+|+-+.||..||
T Consensus       234 i~t~~~V~~l~rlPdGv~l~~~~G-~s~rFD~vViAth~dqAl~mL  278 (447)
T COG2907         234 IETRTPVCRLRRLPDGVVLVNADG-ESRRFDAVVIATHPDQALALL  278 (447)
T ss_pred             eecCCceeeeeeCCCceEEecCCC-CccccceeeeecChHHHHHhc
Confidence            55777899999998877776 666 457899999999999999999

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=90.95  E-value=0.29  Score=36.09  Aligned_cols=36  Identities=17%  Similarity=0.325  Sum_probs=25.3

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARN   48 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~P   48 (127)
                      |-.+|+|.++++++++|.|. .+++..- +|.||+|+=
T Consensus        99 i~~~~~V~~v~~~~~~w~v~~~~~~~~~-a~~VVlAtG  135 (203)
T PF13738_consen   99 IRFNTRVESVRRDGDGWTVTTRDGRTIR-ADRVVLATG  135 (203)
T ss_dssp             EETS--EEEEEEETTTEEEEETTS-EEE-EEEEEE---
T ss_pred             cccCCEEEEEEEeccEEEEEEEecceee-eeeEEEeee
Confidence            55889999999999999998 6663433 899999985

...

>PRK07208 hypothetical protein; Provisional

Probab=89.97  E-value=1.3  Score=37.44  Aligned_cols=64  Identities=13%  Similarity=0.045  Sum_probs=46.3

Q ss_pred             ecCCceEEEEEecCCceE--Ee---cCCCc-cCCCcEEEEccChHhHHHHH-------------hccccceeeeeeeccC
Q 044014           12 IPSNETLLDLEPFNRMWH--LS---ENGES-CGQFDVIIIARNGKCANRLL-------------RMQLSSIWTLLAASED   72 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~--L~---~~g~~-~G~FD~VVvA~Pa~QA~~Ll-------------~~~~~pcWalm~af~~   72 (127)
                      |=.+++|.+|+.++++|.  +.   .+|+. .-.+|.||+|+|+..+.+++             ...+.|.-.+.+.|++
T Consensus       235 i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~v~l~~~~  314 (479)
T PRK07208        235 VVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPPPPEVRAAAAGLRYRDFITVGLLVKE  314 (479)
T ss_pred             EEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCCCHHHHHHHhCCCcceeEEEEEEecC
Confidence            457899999999988774  32   23432 23479999999999988776             2345677778889988


Q ss_pred             CCC
Q 044014           73 PRL   75 (127)
Q Consensus        73 pl~   75 (127)
                      +..
T Consensus       315 ~~~  317 (479)
T PRK07208        315 LNL  317 (479)
T ss_pred             CCC
Confidence            754

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=89.59  E-value=0.54  Score=40.10  Aligned_cols=43  Identities=16%  Similarity=0.330  Sum_probs=29.4

Q ss_pred             eeeecCCceEEEE-EecCCc---eEEe---cCCCccCCCcEEEEccChHhHH
Q 044014            9 INIIPSNETLLDL-EPFNRM---WHLS---ENGESCGQFDVIIIARNGKCAN   53 (127)
Q Consensus         9 ~~~~~~~t~V~~l-~~~~~~---W~L~---~~g~~~G~FD~VVvA~Pa~QA~   53 (127)
                      .|+  -+++|+++ .+.+++   |.+.   ..+.....||.||||+|=.+..
T Consensus       140 A~v--l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~  189 (368)
T PF07156_consen  140 ANV--LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF  189 (368)
T ss_pred             CcE--ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence            455  35789999 444443   6664   3344567799999999997654

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PLN02568 polyamine oxidase

Probab=89.39  E-value=0.99  Score=40.08  Aligned_cols=42  Identities=14%  Similarity=0.115  Sum_probs=35.1

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHH
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANR   54 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~   54 (127)
                      |=.+++|.++++.+++|.+. .+|+. -.+|.||+|+|......
T Consensus       257 I~ln~~V~~I~~~~~~v~V~~~dG~~-~~aD~VIvTvPl~vL~~  299 (539)
T PLN02568        257 IQLGRKVTRIEWQDEPVKLHFADGST-MTADHVIVTVSLGVLKA  299 (539)
T ss_pred             EEeCCeEEEEEEeCCeEEEEEcCCCE-EEcCEEEEcCCHHHHhh
Confidence            45689999999999999998 66644 35799999999998774

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=88.35  E-value=8.7  Score=32.83  Aligned_cols=62  Identities=6%  Similarity=0.119  Sum_probs=42.6

Q ss_pred             ecCCceEEEEEecCC--ceEEecCCC----ccCCCcEEEEccChHhHHHHH--------------hcccc-ceeeeeeec
Q 044014           12 IPSNETLLDLEPFNR--MWHLSENGE----SCGQFDVIIIARNGKCANRLL--------------RMQLS-SIWTLLAAS   70 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~--~W~L~~~g~----~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~-pcWalm~af   70 (127)
                      |=.++.|.+|..+++  .|.+..+|+    ..-.+|.||+++|+..+..|+              +.++. ....+.+++
T Consensus       249 i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~  328 (492)
T TIGR02733       249 LLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGV  328 (492)
T ss_pred             EeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEee
Confidence            457899999988875  365543221    123479999999999988877              12333 356788899


Q ss_pred             cCC
Q 044014           71 EDP   73 (127)
Q Consensus        71 ~~p   73 (127)
                      ++.
T Consensus       329 ~~~  331 (492)
T TIGR02733       329 KRA  331 (492)
T ss_pred             ccc
Confidence            873

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02487 zeta-carotene desaturase

Probab=84.78  E-value=2.9  Score=37.60  Aligned_cols=64  Identities=13%  Similarity=-0.114  Sum_probs=44.8

Q ss_pred             CCceEEEEEecC--Cce----EEe-c-CCC-ccCCCcEEEEccChHhHHHHH--------------hccccceeeeeeec
Q 044014           14 SNETLLDLEPFN--RMW----HLS-E-NGE-SCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAAS   70 (127)
Q Consensus        14 ~~t~V~~l~~~~--~~W----~L~-~-~g~-~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af   70 (127)
                      .+++|.+++.++  +++    .+. . +++ ..-.+|+||+|+|.+.+.+|+              .....||-++-+.|
T Consensus       314 l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~  393 (569)
T PLN02487        314 LRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRY  393 (569)
T ss_pred             eCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEe
Confidence            567888888863  332    232 1 221 122369999999999999998              12357999999999


Q ss_pred             cCCCCCC
Q 044014           71 EDPRLLG   77 (127)
Q Consensus        71 ~~pl~~~   77 (127)
                      |.++..+
T Consensus       394 d~~v~~~  400 (569)
T PLN02487        394 NGWVTEM  400 (569)
T ss_pred             ccccccc
Confidence            9887655

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=83.14  E-value=2.9  Score=32.67  Aligned_cols=57  Identities=16%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             cCCceEEEEEecCCceE-Ee-cCCCccCCCcEEEEccChHhHHHHH---h--ccccceeeeeeeccC
Q 044014           13 PSNETLLDLEPFNRMWH-LS-ENGESCGQFDVIIIARNGKCANRLL---R--MQLSSIWTLLAASED   72 (127)
Q Consensus        13 ~~~t~V~~l~~~~~~W~-L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll---~--~~~~pcWalm~af~~   72 (127)
                      =.+|+|.+++.++++|. +. .+|+ .. +|.||+|. +..+..|+   .  ..+.|+-..++.++.
T Consensus       165 ~~~~~V~~i~~~~~~v~gv~~~~g~-i~-ad~vV~a~-G~~s~~l~~~~~~~~~~~~~~~~~~~~~~  228 (358)
T PF01266_consen  165 RTGTEVTSIDVDGGRVTGVRTSDGE-IR-ADRVVLAA-GAWSPQLLPLLGLDLPLRPVRGQVLVLEP  228 (358)
T ss_dssp             EESEEEEEEEEETTEEEEEEETTEE-EE-ECEEEE---GGGHHHHHHTTTTSSTEEEEEEEEEEEEG
T ss_pred             cccccccchhhcccccccccccccc-cc-cceeEecc-cccceeeeecccccccccccceEEEEEcc
Confidence            35789999999999998 87 6665 44 49999987 45667766   2  256777777777764

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PLN03000 amine oxidase

Probab=80.18  E-value=3.5  Score=39.25  Aligned_cols=62  Identities=6%  Similarity=-0.039  Sum_probs=45.9

Q ss_pred             ecCCceEEEEEecCCceEEecCCCccCCCcEEEEccChHhHH----HHH------------hccccceeeeeeeccCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCAN----RLL------------RMQLSSIWTLLAASEDPR   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~Pa~QA~----~Ll------------~~~~~pcWalm~af~~pl   74 (127)
                      |-.++.|++|++.++++.+..+++. -.+|.||+|+|.....    .+.            ++.|-..=-+.+.|+++.
T Consensus       393 I~Ln~~Vt~I~~~~dgV~V~~~~~~-~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~F  470 (881)
T PLN03000        393 ILYEKTVQTIRYGSNGVKVIAGNQV-YEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVF  470 (881)
T ss_pred             cccCCcEEEEEECCCeEEEEECCcE-EEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence            5579999999999999999833322 3569999999999877    221            445556667778888863

>TIGR02734 crtI_fam phytoene desaturase

Probab=80.07  E-value=6.8  Score=33.49  Aligned_cols=59  Identities=17%  Similarity=0.199  Sum_probs=40.9

Q ss_pred             ecCCceEEEEEecCCc-eEEe-cCCCccCCCcEEEEccChHhHHHHH---------------hcc-ccceeeeeeecc
Q 044014           12 IPSNETLLDLEPFNRM-WHLS-ENGESCGQFDVIIIARNGKCANRLL---------------RMQ-LSSIWTLLAASE   71 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~-W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll---------------~~~-~~pcWalm~af~   71 (127)
                      |=.++.|.++..++++ |.+. .+|+.. .+|.||++++..++...|               +.+ ..++..+.++++
T Consensus       236 i~~~~~V~~i~~~~~~~~~V~~~~g~~~-~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~  312 (502)
T TIGR02734       236 LRLNAEVIRIETEGGRATAVHLADGERL-DADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLL  312 (502)
T ss_pred             EEECCeEEEEEeeCCEEEEEEECCCCEE-ECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeec
Confidence            3467899999877654 6776 666544 579999999998887544               111 236666777777

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=80.06  E-value=2.4  Score=36.89  Aligned_cols=37  Identities=16%  Similarity=0.463  Sum_probs=28.6

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCC-c--cCCCcEEEEccC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGE-S--CGQFDVIIIARN   48 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~-~--~G~FD~VVvA~P   48 (127)
                      |-.+|+|.++++.+++|.+. .++. .  ...||+||||+=
T Consensus       130 I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG  170 (461)
T PLN02172        130 VRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNG  170 (461)
T ss_pred             EEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEecc
Confidence            56789999999999999997 3221 1  236999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.7
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.46
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.35
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.86
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.75
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.6
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.11
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	96.47
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	96.4
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	96.03
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	96.02
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	96.01
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	95.99
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.47
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	95.09
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	93.74
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	93.42
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	92.05
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	91.79
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	90.9
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	90.82
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	90.04
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	86.11
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	81.31

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.70  E-value=2.5e-17  Score=130.14  Aligned_cols=108  Identities=15%  Similarity=0.199  Sum_probs=88.1

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------------hccccceeeeeeeccCC-
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------------RMQLSSIWTLLAASEDP-   73 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------------~~~~~pcWalm~af~~p-   73 (127)
                      |=.+++|.++++++++|.+. ++|+. -.||.||+|+|++|+.+||                .++|.|||++|++|+++ 
T Consensus       126 i~~~~~V~~i~~~~~~~~v~~~~g~~-~~ad~vV~A~p~~~~~~ll~~~~~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~  204 (342)
T 3qj4_A          126 VYFRHRVTQINLRDDKWEVSKQTGSP-EQFDLIVLTMPVPEILQLQGDITTLISECQRQQLEAVSYSSRYALGLFYEAGT  204 (342)
T ss_dssp             EESSCCEEEEEECSSSEEEEESSSCC-EEESEEEECSCHHHHTTCBSTHHHHSCHHHHHHHHTCCBCCEEEEEEECSSCC
T ss_pred             EEeCCEEEEEEEcCCEEEEEECCCCE-EEcCEEEECCCHHHHHHHhcccccccCHHHHHHHhcCCccccEEEEEEECCCC
Confidence            45789999999999999998 66654 3789999999999987776                45789999999999975 


Q ss_pred             -CCCCCcccccccccc---ceeEEEeCCCCCCCCCCCCCcEEEEEeChhhhhhcC
Q 044014           74 -RLLGSAASFKAPLLK---AVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGKRKK  124 (127)
Q Consensus        74 -l~~~~~~~~dga~v~---~LsWiarnssKPGR~~r~~~e~WVlhAt~~wS~~Hk  124 (127)
                       ++.+    ++|.++.   .+.|+++||+||||....+.++||+|++.+|+++|.
T Consensus       205 ~~~~~----~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~  255 (342)
T 3qj4_A          205 KIDVP----WAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYL  255 (342)
T ss_dssp             --CCS----CSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTT
T ss_pred             ccCCc----eeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhh
Confidence             5556    8887765   599999999999954222456999999999998875

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.35  E-value=8.2e-07  Score=72.21  Aligned_cols=108  Identities=14%  Similarity=0.079  Sum_probs=75.8

Q ss_pred             ecCCceEEEEEecCCc-eEEecCCCccCCCcEEEEccChHhHHHHH------------hccccceeeeeeeccCCCCCCC
Q 044014           12 IPSNETLLDLEPFNRM-WHLSENGESCGQFDVIIIARNGKCANRLL------------RMQLSSIWTLLAASEDPRLLGS   78 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~-W~L~~~g~~~G~FD~VVvA~Pa~QA~~Ll------------~~~~~pcWalm~af~~pl~~~~   78 (127)
                      |=.+|+|.+|++++++ |.+..+|+ .-.+|.||+|+|+.++.+|+            .+.+.|++.+++.|+++.-.. 
T Consensus       251 i~~~~~V~~i~~~~~~~~~v~~~~~-~~~ad~vv~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~-  328 (477)
T 3nks_A          251 VLRGQPVCGLSLQAEGRWKVSLRDS-SLEADHVISAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHLPV-  328 (477)
T ss_dssp             EECSCCCCEEEECGGGCEEEECSSC-EEEESEEEECSCHHHHHHHSCGGGHHHHHHHHTCCEEEEEEEEEEETTCCCSS-
T ss_pred             EEeCCEEEEEEEcCCceEEEEECCe-EEEcCEEEECCCHHHHHHhccccCHHHHHHHhcCCCCcEEEEEEEECCCCCCC-
Confidence            4578999999998877 99984343 24689999999999999987            357889999999999875311 


Q ss_pred             cccccccccc------ceeEEEeCCCCCCCCCCCCCcEEEEEeChhhhhhc
Q 044014           79 AASFKAPLLK------AVSWMADNPGKLFRSQSDVPHCWTFFSTAAYGKRK  123 (127)
Q Consensus        79 ~~~~dga~v~------~LsWiarnssKPGR~~r~~~e~WVlhAt~~wS~~H  123 (127)
                       ..| |..+.      .+.|+-.++..|++.+..+...++++...+|+.++
T Consensus       329 -~~~-g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~  377 (477)
T 3nks_A          329 -QGF-GHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTL  377 (477)
T ss_dssp             -CSS-EEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHH
T ss_pred             -CCc-eEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCcccccc
Confidence             013 33331      57886655555764322234567788888887654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.86  E-value=2.3e-05  Score=63.84  Aligned_cols=64  Identities=17%  Similarity=0.189  Sum_probs=54.4

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH---------hccccceeeeeeeccCCCCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL---------RMQLSSIWTLLAASEDPRLLG   77 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll---------~~~~~pcWalm~af~~pl~~~   77 (127)
                      |=.+|+|.+|++.+++|.+. .+|  .-.+|.||+|+|+.++.+|+         ...+.|++.+++.|++|.+.+
T Consensus       251 i~~~~~V~~i~~~~~~~~v~~~~g--~~~ad~vV~a~p~~~~~~ll~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~  324 (475)
T 3lov_A          251 IRLETPLLAISREDGRYRLKTDHG--PEYADYVLLTIPHPQVVQLLPDAHLPELEQLTTHSTATVTMIFDQQQSLP  324 (475)
T ss_dssp             EESSCCCCEEEEETTEEEEECTTC--CEEESEEEECSCHHHHHHHCTTSCCHHHHTCCEEEEEEEEEEEECCSSCS
T ss_pred             EEcCCeeeEEEEeCCEEEEEECCC--eEECCEEEECCCHHHHHHHcCccCHHHHhcCCCCeEEEEEEEECCcCCCC
Confidence            45889999999999999998 666  45689999999999999987         256889999999999987433

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.75  E-value=5.1e-05  Score=60.89  Aligned_cols=62  Identities=18%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------hccccceeeeeeeccCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------RMQLSSIWTLLAASEDPR   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------~~~~~pcWalm~af~~pl   74 (127)
                      |=.+++|.+|++++++|.+. .+|+. -.+|.||+|+|+.++.+|+          ...+.+++.+++.|++|.
T Consensus       250 i~~~~~V~~i~~~~~~~~v~~~~g~~-~~ad~vi~a~p~~~~~~l~~~~~~~~~~~~~~~~~~~~v~l~~~~~~  322 (470)
T 3i6d_A          250 VYKGTKVTKLSHSGSCYSLELDNGVT-LDADSVIVTAPHKAAAGMLSELPAISHLKNMHSTSVANVALGFPEGS  322 (470)
T ss_dssp             EECSCCEEEEEECSSSEEEEESSSCE-EEESEEEECSCHHHHHHHTTTSTTHHHHHTCEEEEEEEEEEEESSTT
T ss_pred             EEeCCceEEEEEcCCeEEEEECCCCE-EECCEEEECCCHHHHHHHcCCchhhHHHhcCCCCceEEEEEEECchh
Confidence            55899999999999999998 66643 4579999999999999987          346889999999999875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.60  E-value=0.00011  Score=59.75  Aligned_cols=105  Identities=10%  Similarity=0.060  Sum_probs=67.9

Q ss_pred             ecCCceEEEEEecCCceEEec----CCCccCCCcEEEEccChHhHHHHH------------hccccceeeeeeeccCCC-
Q 044014           12 IPSNETLLDLEPFNRMWHLSE----NGESCGQFDVIIIARNGKCANRLL------------RMQLSSIWTLLAASEDPR-   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~~----~g~~~G~FD~VVvA~Pa~QA~~Ll------------~~~~~pcWalm~af~~pl-   74 (127)
                      |=.+++|.++++.+++|.+..    +|+ .-.+|.||+|+|+.++.+|+            ...+.+++.++++|+++. 
T Consensus       252 i~~~~~V~~i~~~~~~~~v~~~~~~~g~-~~~ad~vV~a~~~~~~~~ll~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~  330 (478)
T 2ivd_A          252 AHVGARVEGLAREDGGWRLIIEEHGRRA-ELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIAYAPIAVVHLGFDAGTL  330 (478)
T ss_dssp             EESSEEEEEEECC--CCEEEEEETTEEE-EEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBCCEEEEEEEECTTSS
T ss_pred             EEcCCEEEEEEecCCeEEEEEeecCCCc-eEEcCEEEECCCHHHHHHHhhccCHHHHHHHhcCCCCcEEEEEEEEccccC
Confidence            457899999999988898872    443 34689999999999999887            345789999999999874 


Q ss_pred             CCCCccccccccc--c--ceeEEEeCCCC-CCCCCCCCCcEEEEEeChhhh
Q 044014           75 LLGSAASFKAPLL--K--AVSWMADNPGK-LFRSQSDVPHCWTFFSTAAYG  120 (127)
Q Consensus        75 ~~~~~~~~dga~v--~--~LsWiarnssK-PGR~~r~~~e~WVlhAt~~wS  120 (127)
                      +.+  ..+...+.  .  ++.++..+|++ |++. .++...++++.+..++
T Consensus       331 ~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-p~g~~~l~~~~~~~~~  378 (478)
T 2ivd_A          331 PAP--DGFGFLVPAEEQRRMLGAIHASTTFPFRA-EGGRVLYSCMVGGARQ  378 (478)
T ss_dssp             CCC--CSSEEECCGGGCCSCCEEEEHHHHCGGGB-STTCEEEEEEEECTTC
T ss_pred             CCC--CceEEEecCCCCCceEEEEEEcccCCCcC-CCCCEEEEEEeCCcCC
Confidence            321  11211111  1  45666666665 4421 1233467777665553

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.11  E-value=0.0012  Score=53.32  Aligned_cols=101  Identities=13%  Similarity=0.033  Sum_probs=67.7

Q ss_pred             ecCCceEEEEEecCCc-eEEecCCCccCCCcEEEEccChHhHHHHH--------------hccccceeeeeeeccCCCCC
Q 044014           12 IPSNETLLDLEPFNRM-WHLSENGESCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAASEDPRLL   76 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~-W~L~~~g~~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af~~pl~~   76 (127)
                      |=.+++|.+++.++++ |.+..+|+.. .+|.||+|+|..++.+|+              +..+.++..+.+.|++|.-.
T Consensus       229 i~~~~~V~~i~~~~~~~v~v~~~~~~~-~ad~VI~a~p~~~~~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~  307 (453)
T 2yg5_A          229 VFLNAPVRTVKWNESGATVLADGDIRV-EASRVILAVPPNLYSRISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWR  307 (453)
T ss_dssp             EECSCCEEEEEEETTEEEEEETTTEEE-EEEEEEECSCGGGGGGSEEESCCCHHHHHHGGGEEECCEEEEEEEESSCGGG
T ss_pred             EEcCCceEEEEEeCCceEEEEECCeEE-EcCEEEEcCCHHHHhcCEeCCCCCHHHHHHHhcCCCcceEEEEEEECCCCCC
Confidence            4478999999999888 9988545333 479999999999877764              33567889999999987421


Q ss_pred             CCcccccccccc---ceeEEEeCCCCCCCCCCCCCcEEEEEeChhhh
Q 044014           77 GSAASFKAPLLK---AVSWMADNPGKLFRSQSDVPHCWTFFSTAAYG  120 (127)
Q Consensus        77 ~~~~~~dga~v~---~LsWiarnssKPGR~~r~~~e~WVlhAt~~wS  120 (127)
                      .  ..+.|..+.   ++.++..++ +|.   . +...++.+...+++
T Consensus       308 ~--~~~~g~~~~~~~~~~~~~~~~-~~~---~-~~~~l~~~~~~~~~  347 (453)
T 2yg5_A          308 E--DGLSGTGFGASEVVQEVYDNT-NHE---D-DRGTLVAFVSDEKA  347 (453)
T ss_dssp             G--GTEEEEEECTTSSSCEEEECC-CTT---C-SSEEEEEEEEHHHH
T ss_pred             C--CCCCceeecCCCCeEEEEeCC-CCC---C-CCCEEEEEeccHHH
Confidence            1  013343332   677776555 554   1 12367777665544

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=96.47  E-value=0.0022  Score=52.42  Aligned_cols=85  Identities=4%  Similarity=-0.051  Sum_probs=62.3

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH--------------hccccceeeeeeeccCCCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAASEDPRLL   76 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af~~pl~~   76 (127)
                      |=.+++|.+++..++++.+. .+|+. -.+|.||+|+|..++.+|+              ...+.++..+.+.|+++...
T Consensus       273 i~~~~~V~~i~~~~~~v~v~~~~g~~-~~ad~vI~a~~~~~l~~i~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~~~  351 (495)
T 2vvm_A          273 YVFGCPVRSVVNERDAARVTARDGRE-FVAKRVVCTIPLNVLSTIQFSPALSTERISAMQAGHVSMCTKVHAEVDNKDMR  351 (495)
T ss_dssp             EESSCCEEEEEECSSSEEEEETTCCE-EEEEEEEECCCGGGGGGSEEESCCCHHHHHHHHHCCCCCCEEEEEEESCGGGG
T ss_pred             EEeCCEEEEEEEcCCEEEEEECCCCE-EEcCEEEECCCHHHHhheeeCCCCCHHHHHHHHhcCCCceeEEEEEECCccCC
Confidence            45789999999998899997 66643 3579999999999887764              34567899999999987532


Q ss_pred             CCcccccccccc--ceeEEEeCCCCCC
Q 044014           77 GSAASFKAPLLK--AVSWMADNPGKLF  101 (127)
Q Consensus        77 ~~~~~~dga~v~--~LsWiarnssKPG  101 (127)
                      +    +.|....  ++.++..++..|+
T Consensus       352 ~----~~g~~~~~~~~~~~~~~~~~~~  374 (495)
T 2vvm_A          352 S----WTGIAYPFNKLCYAIGDGTTPA  374 (495)
T ss_dssp             G----EEEEECSSCSSCEEEEEEECTT
T ss_pred             C----ceeEecCCCCcEEEecCCCCCC
Confidence            3    4443222  6777777766665

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=96.40  E-value=0.018  Score=45.59  Aligned_cols=101  Identities=13%  Similarity=0.035  Sum_probs=64.9

Q ss_pred             ecCCceEEEEEecCCceE-EecCCCccCCCcEEEEccChHhHHHHHh-----------------ccccceeeeeeeccCC
Q 044014           12 IPSNETLLDLEPFNRMWH-LSENGESCGQFDVIIIARNGKCANRLLR-----------------MQLSSIWTLLAASEDP   73 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~-L~~~g~~~G~FD~VVvA~Pa~QA~~Ll~-----------------~~~~pcWalm~af~~p   73 (127)
                      |=.+++|.+|+.++++|. +..+|+.. .+|.||+|+|+..+.+||.                 ....+...+.++|+++
T Consensus       213 i~~~~~V~~i~~~~~~~~gv~~~g~~~-~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~  291 (425)
T 3ka7_A          213 IHTGQEVSKILIENGKAAGIIADDRIH-DADLVISNLGHAATAVLCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEP  291 (425)
T ss_dssp             EECSCCEEEEEEETTEEEEEEETTEEE-ECSEEEECSCHHHHHHHTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSC
T ss_pred             EEECCceeEEEEECCEEEEEEECCEEE-ECCEEEECCCHHHHHHhcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCC
Confidence            457899999999998887 65445443 4699999999999998882                 1245677788899887


Q ss_pred             CCCCCcccccccccc----ceeEEEeCCCC-CCCCCCCCCcEEEEEeChhh
Q 044014           74 RLLGSAASFKAPLLK----AVSWMADNPGK-LFRSQSDVPHCWTFFSTAAY  119 (127)
Q Consensus        74 l~~~~~~~~dga~v~----~LsWiarnssK-PGR~~r~~~e~WVlhAt~~w  119 (127)
                      +..     ..+.++.    .+..+...|.+ |++. ..+.....++....|
T Consensus       292 ~~~-----~~~~~~~~~~~~~~~~~~~s~~~p~~a-p~G~~~l~~~~~~~~  336 (425)
T 3ka7_A          292 LVG-----HTGVLLTPYTRRINGVNEVTQADPELA-PPGKHLTMCHQYVAP  336 (425)
T ss_dssp             SSC-----SSSEEECCSSSSEEEEECGGGTCGGGS-CTTCEEEEEEEEECG
T ss_pred             ccC-----cCEEEECCChhhcceEEeccCCCCCcC-CCCCeEEEEEecccc
Confidence            542     2333332    35566655554 5543 223344444554444

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=96.03  E-value=0.018  Score=47.92  Aligned_cols=61  Identities=16%  Similarity=0.142  Sum_probs=47.9

Q ss_pred             ecCC--ceEEEEEecCCceEEecCCCccCCCcEEEEccChHhHHHHH----------------hccccceeeeeeeccCC
Q 044014           12 IPSN--ETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL----------------RMQLSSIWTLLAASEDP   73 (127)
Q Consensus        12 ~~~~--t~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~Pa~QA~~Ll----------------~~~~~pcWalm~af~~p   73 (127)
                      |-.+  ++|.+|++++++|.+ .+|+ .-.||.||+|+|++++.+|+                ...+.++-.+.++|+.+
T Consensus       231 i~~~~~~~V~~I~~~~~~v~~-~~G~-~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~  308 (484)
T 4dsg_A          231 LTFNSGFQAIAIDADAKTITF-SNGE-VVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGT  308 (484)
T ss_dssp             EEECGGGCEEEEETTTTEEEE-TTSC-EEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESC
T ss_pred             EEECCCceeEEEEecCCEEEE-CCCC-EEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCC
Confidence            3356  569999999988876 3443 24589999999999999886                34578999999999987


Q ss_pred             C
Q 044014           74 R   74 (127)
Q Consensus        74 l   74 (127)
                      .
T Consensus       309 ~  309 (484)
T 4dsg_A          309 P  309 (484)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=96.02  E-value=0.0063  Score=50.34  Aligned_cols=62  Identities=13%  Similarity=0.141  Sum_probs=50.0

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH--------------hccccceeeeeeeccCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAASEDPR   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af~~pl   74 (127)
                      |=.+++|.+++.++++|.+. .+|+.. .+|.||+|+|..++.+|+              +..+.++-.+.+.|+++.
T Consensus       229 i~~~~~V~~i~~~~~~v~v~~~~g~~~-~ad~VI~a~p~~~l~~l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~  305 (520)
T 1s3e_A          229 VKLERPVIYIDQTRENVLVETLNHEMY-EAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPF  305 (520)
T ss_dssp             EESSCCEEEEECSSSSEEEEETTSCEE-EESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCBCCEEEEEEECSSCG
T ss_pred             EEcCCeeEEEEECCCeEEEEECCCeEE-EeCEEEECCCHHHHcceeeCCCCCHHHHHHHHhCCCcceEEEEEEeCCCc
Confidence            45789999999999999997 666544 579999999999987764              345667778999999885

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=96.01  E-value=0.016  Score=46.34  Aligned_cols=60  Identities=15%  Similarity=0.149  Sum_probs=47.9

Q ss_pred             ecCCceEEEEEecCCceEEecCCCccCCCcEEEEccChHhHHHHHh--------------ccccceeeeeeeccCC
Q 044014           12 IPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLLR--------------MQLSSIWTLLAASEDP   73 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~Pa~QA~~Ll~--------------~~~~pcWalm~af~~p   73 (127)
                      |=.+++|.+|+.++++| +..+|+. -.+|.||+|+|+.++.+|+.              .+..++..+.++|+++
T Consensus       206 i~~~~~V~~i~~~~~~v-V~~~g~~-~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~  279 (421)
T 3nrn_A          206 ILTRKEVVEINIEEKKV-YTRDNEE-YSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGE  279 (421)
T ss_dssp             EESSCCEEEEETTTTEE-EETTCCE-EECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCCCCEEEEEEEEESS
T ss_pred             EEcCCeEEEEEEECCEE-EEeCCcE-EEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCCCceEEEEEEEcCC
Confidence            45789999999999999 7755543 34799999999999999882              2345788888999887

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=95.99  E-value=0.0062  Score=49.70  Aligned_cols=88  Identities=11%  Similarity=-0.056  Sum_probs=59.9

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCC--ccCCCcEEEEccChHhHHHHH------------hccccceeeeeeeccCCCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGE--SCGQFDVIIIARNGKCANRLL------------RMQLSSIWTLLAASEDPRLL   76 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~--~~G~FD~VVvA~Pa~QA~~Ll------------~~~~~pcWalm~af~~pl~~   76 (127)
                      |=.+++|.++++.+++|.+. .+|.  ..-.||.||+|+|..+...|+            +..+.++..+.+.|+++.-.
T Consensus       254 i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~l~~~l~~~~~~~l~~~~~~~~~kv~l~~~~~~w~  333 (489)
T 2jae_A          254 IVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPHLVGRLQNNLPGDVLTALKAAKPSSSGKLGIEYSRRWWE  333 (489)
T ss_dssp             EETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHHHHTTSEECCCHHHHHHHHTEECCCEEEEEEEESSCHHH
T ss_pred             EEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHHHHHhCccCCCHHHHHHHHhCCCccceEEEEEeCCCCcc
Confidence            44789999999999999997 5442  234689999999998766554            45678999999999987411


Q ss_pred             CCcccccc-cccc--ceeEEEeCCCCC
Q 044014           77 GSAASFKA-PLLK--AVSWMADNPGKL  100 (127)
Q Consensus        77 ~~~~~~dg-a~v~--~LsWiarnssKP  100 (127)
                      . ...+.| ....  ++..+..+|.+.
T Consensus       334 ~-~~~~~g~~~~~~~~~~~~~~~s~~~  359 (489)
T 2jae_A          334 T-EDRIYGGASNTDKDISQIMFPYDHY  359 (489)
T ss_dssp             H-TTCCCSCEEEESSTTCEEECCSSST
T ss_pred             C-CCCcccccccCCCCceEEEeCCCCC
Confidence            0 000222 2122  667777666653

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.47  E-value=0.021  Score=46.65  Aligned_cols=63  Identities=8%  Similarity=0.082  Sum_probs=49.3

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCcc---CCCcEEEEccChHhHHHHH--------------hccccceeeeeeeccCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESC---GQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAASEDP   73 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~---G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af~~p   73 (127)
                      |=.+++|.+|++.+++|.+. .+|+..   -.+|.||+|+|...+.+|+              ...|.+.-.+.+.|+++
T Consensus       255 i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~  334 (498)
T 2iid_A          255 VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTK  334 (498)
T ss_dssp             EESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCEECEEEEEEEESSC
T ss_pred             cccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhheecCCCCCHHHHHHHHhCCCcceeEEEEEeCCC
Confidence            45789999999999999997 555432   2689999999998766553              44677888899999987


Q ss_pred             C
Q 044014           74 R   74 (127)
Q Consensus        74 l   74 (127)
                      .
T Consensus       335 ~  335 (498)
T 2iid_A          335 F  335 (498)
T ss_dssp             G
T ss_pred             C
Confidence            4

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=95.09  E-value=0.034  Score=45.35  Aligned_cols=62  Identities=6%  Similarity=0.048  Sum_probs=49.0

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------------hccccceeeeeeeccCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------------RMQLSSIWTLLAASEDPR   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------------~~~~~pcWalm~af~~pl   74 (127)
                      |-.+++|.+++..++++.+. .+|+.. .+|.||+|+|..++.+++                ...+.+.--+.+.|++|.
T Consensus       231 i~~~~~V~~i~~~~~~v~v~~~~g~~~-~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~  309 (472)
T 1b37_A          231 LQLNKVVREIKYSPGGVTVKTEDNSVY-SADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKF  309 (472)
T ss_dssp             EESSCCEEEEEECSSCEEEEETTSCEE-EESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCC
T ss_pred             EEcCCEEEEEEEcCCcEEEEECCCCEE-EcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcC
Confidence            55789999999999999997 666543 479999999999987754                334567777889998864

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=93.74  E-value=0.086  Score=42.93  Aligned_cols=63  Identities=11%  Similarity=0.190  Sum_probs=47.2

Q ss_pred             ecCCceEEEEEecCCc------eEEe-c--CCC--ccCCCcEEEEccChHhHHHHH--------------hccccceeee
Q 044014           12 IPSNETLLDLEPFNRM------WHLS-E--NGE--SCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTL   66 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~------W~L~-~--~g~--~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWal   66 (127)
                      |=.+++|.+|+..+++      |.+. .  +|+  ..-.+|.||+|+|...+.+|+              ...+.++-.+
T Consensus       258 i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~l~~~~~~~~~~v  337 (504)
T 1sez_A          258 LRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVDYVPLSVV  337 (504)
T ss_dssp             EETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCEEEEEEE
T ss_pred             EEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhcccCCcccHHHHhcCCCCceEEE
Confidence            4578999999998887      9886 3  342  223589999999999999886              1223477888


Q ss_pred             eeeccCCC
Q 044014           67 LAASEDPR   74 (127)
Q Consensus        67 m~af~~pl   74 (127)
                      .+.|+++.
T Consensus       338 ~l~~~~~~  345 (504)
T 1sez_A          338 ITTFKREN  345 (504)
T ss_dssp             EEEEEGGG
T ss_pred             EEEEchhh
Confidence            88998763

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=93.42  E-value=0.04  Score=43.83  Aligned_cols=42  Identities=10%  Similarity=0.047  Sum_probs=34.8

Q ss_pred             cCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH
Q 044014           13 PSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL   56 (127)
Q Consensus        13 ~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll   56 (127)
                      =.+++|.++++.+++|.+. .+|+  -.+|.||+|+|+.++.+++
T Consensus       221 ~~~~~V~~i~~~~~~v~v~~~~g~--~~ad~Vv~a~~~~~~~~~l  263 (424)
T 2b9w_A          221 ERNVDITRITREDGKVHIHTTDWD--RESDVLVLTVPLEKFLDYS  263 (424)
T ss_dssp             BCSCCEEEEECCTTCEEEEESSCE--EEESEEEECSCHHHHTTSB
T ss_pred             EcCCEEEEEEEECCEEEEEECCCe--EEcCEEEECCCHHHHhhcc
Confidence            4689999999998899987 6564  3689999999999876665

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=92.05  E-value=0.19  Score=44.98  Aligned_cols=62  Identities=5%  Similarity=-0.065  Sum_probs=48.0

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH----------------hccccceeeeeeeccCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL----------------RMQLSSIWTLLAASEDPR   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll----------------~~~~~pcWalm~af~~pl   74 (127)
                      |=.+++|.+|+.+++++.+. .+|+. -.+|.||+|+|........                .+.+.+.--+.+.|++|.
T Consensus       546 I~l~t~V~~I~~~~~~v~V~~~~G~~-i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~F  624 (776)
T 4gut_A          546 IQLKSPVQCIDYSGDEVQVTTTDGTG-YSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRF  624 (776)
T ss_dssp             EESSCCEEEEECSSSSEEEEETTCCE-EEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCT
T ss_pred             EEcCCeeEEEEEcCCEEEEEECCCcE-EEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCccc
Confidence            45789999999999999998 66643 3479999999998876411                334567778899999874

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=91.79  E-value=0.29  Score=39.70  Aligned_cols=63  Identities=13%  Similarity=0.115  Sum_probs=39.6

Q ss_pred             ecCCceEEEEEecCCceE-Ee-cCCCccCCCcEEEEccChHhHHHHH---------------hccc-cceeeeeeeccCC
Q 044014           12 IPSNETLLDLEPFNRMWH-LS-ENGESCGQFDVIIIARNGKCANRLL---------------RMQL-SSIWTLLAASEDP   73 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~-L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll---------------~~~~-~pcWalm~af~~p   73 (127)
                      |=.+++|++|+.+++++. +. ++|+... +|+||++++++.+.+.|               ..++ .++..+.++++.+
T Consensus       238 I~~~~~V~~I~~~~~~~~gV~~~~g~~~~-ad~VV~~a~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~  316 (501)
T 4dgk_A          238 VVLNARVSHMETTGNKIEAVHLEDGRRFL-TQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLFVLYFGLNHH  316 (501)
T ss_dssp             EECSCCEEEEEEETTEEEEEEETTSCEEE-CSCEEECCC---------------------------CCEEEEEEEEESSC
T ss_pred             eeeecceeEEEeeCCeEEEEEecCCcEEE-cCEEEECCCHHHHHHHhccccccchhhhhhhhccccCCceeEEEecccCC
Confidence            557899999999999887 55 6776554 59999999998876544               1112 2567777788776


Q ss_pred             CC
Q 044014           74 RL   75 (127)
Q Consensus        74 l~   75 (127)
                      .+
T Consensus       317 ~~  318 (501)
T 4dgk_A          317 HD  318 (501)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=90.90  E-value=0.26  Score=39.01  Aligned_cols=62  Identities=11%  Similarity=0.127  Sum_probs=45.1

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHHH--------------hccccceeeeeeeccCCC
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRLL--------------RMQLSSIWTLLAASEDPR   74 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~Ll--------------~~~~~pcWalm~af~~pl   74 (127)
                      |=.+++|.+++.+++++.+. .+|+. -.+|.||+|+|.+....+.              ...+...--+.+.|+++.
T Consensus       220 i~~~~~V~~i~~~~~~v~v~~~~g~~-~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~  296 (431)
T 3k7m_X          220 IRLQTVVTGIDQSGDVVNVTVKDGHA-FQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHGGQGLKILIHVRGAE  296 (431)
T ss_dssp             EESSCCEEEEECSSSSEEEEETTSCC-EEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCCCCEEEEEEEEESCC
T ss_pred             eEeCCEEEEEEEcCCeEEEEECCCCE-EEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCCcceEEEEEEECCCC
Confidence            45789999999999999987 66653 3569999999977655443              233555666777777764

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=90.82  E-value=0.41  Score=39.50  Aligned_cols=62  Identities=11%  Similarity=0.154  Sum_probs=46.9

Q ss_pred             ecCCceEEEEEec-CCceEEe-cCCCccCCCcEEEEccChHhHHHH----------H---------------hcccccee
Q 044014           12 IPSNETLLDLEPF-NRMWHLS-ENGESCGQFDVIIIARNGKCANRL----------L---------------RMQLSSIW   64 (127)
Q Consensus        12 ~~~~t~V~~l~~~-~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~L----------l---------------~~~~~pcW   64 (127)
                      |=.+++|.+|+.. ++++.+. .+|+.. .+|.||+|+|.......          +               ++.|.+.-
T Consensus       217 i~~~~~V~~I~~~~~~~v~v~~~~g~~~-~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~  295 (516)
T 1rsg_A          217 LKLSCEVKSITREPSKNVTVNCEDGTVY-NADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALG  295 (516)
T ss_dssp             EETTCCEEEEEECTTSCEEEEETTSCEE-EEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCE
T ss_pred             EEECCEEEEEEEcCCCeEEEEECCCcEE-ECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcce
Confidence            5578999999986 6789997 666433 57999999999887532          1               34566777


Q ss_pred             eeeeeccCCC
Q 044014           65 TLLAASEDPR   74 (127)
Q Consensus        65 alm~af~~pl   74 (127)
                      -+.+.|++|.
T Consensus       296 Kv~l~f~~~f  305 (516)
T 1rsg_A          296 KVIFEFEECC  305 (516)
T ss_dssp             EEEEEESSCC
T ss_pred             EEEEEeCCCC
Confidence            7888888875

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=90.04  E-value=0.39  Score=38.77  Aligned_cols=60  Identities=8%  Similarity=0.111  Sum_probs=45.6

Q ss_pred             ecCCceEEEEEecCCceEEecCCCccCCCcEEEEccChHhHHHHH----------hccccceeeeeeeccCC
Q 044014           12 IPSNETLLDLEPFNRMWHLSENGESCGQFDVIIIARNGKCANRLL----------RMQLSSIWTLLAASEDP   73 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~~~g~~~G~FD~VVvA~Pa~QA~~Ll----------~~~~~pcWalm~af~~p   73 (127)
                      |=.+++|.++..+++.+.+. +|+. -.+|.||+|+|.+...++|          ...+.+.-++.++|+..
T Consensus       239 i~~~~~V~~I~~~~~~v~~~-~G~~-~~ad~vI~t~P~~~l~~~l~~~~~~~~~~~l~y~~~~~v~l~~~~~  308 (513)
T 4gde_A          239 FGEKGKVTKVNANNKTVTLQ-DGTT-IGYKKLVSTMAVDFLAEAMNDQELVGLTKQLFYSSTHVIGVGVRGS  308 (513)
T ss_dssp             ESGGGCEEEEETTTTEEEET-TSCE-EEEEEEEECSCHHHHHHHTTCHHHHHHHTTCCEEEEEEEEEEEESS
T ss_pred             eecceEEEEEEccCCEEEEc-CCCE-EECCEEEECCCHHHHHHhcCchhhHhhhhcccCCceEEEEEEEecc
Confidence            34689999999988776554 4433 3579999999999999887          34567777888888664

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=86.11  E-value=0.6  Score=40.38  Aligned_cols=64  Identities=9%  Similarity=-0.007  Sum_probs=47.4

Q ss_pred             ecCCceEEEEEecCCceEEe-cCC-----CccCCCcEEEEccChHhHHHHH------------------hccccceeeee
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENG-----ESCGQFDVIIIARNGKCANRLL------------------RMQLSSIWTLL   67 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g-----~~~G~FD~VVvA~Pa~QA~~Ll------------------~~~~~pcWalm   67 (127)
                      |-.+++|.+|++.++++.+. .++     ...-.+|.||+|+|.....++.                  ...|.+.=-+.
T Consensus       413 I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~  492 (662)
T 2z3y_A          413 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVV  492 (662)
T ss_dssp             EETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEE
T ss_pred             eecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHHHHhcccCceEEcCCCCHHHHHHHHhCCccceeEEE
Confidence            45799999999999999997 431     1123479999999998877531                  33466777788


Q ss_pred             eeccCCCC
Q 044014           68 AASEDPRL   75 (127)
Q Consensus        68 ~af~~pl~   75 (127)
                      +.|++|.-
T Consensus       493 l~f~~~fW  500 (662)
T 2z3y_A          493 LCFDRVFW  500 (662)
T ss_dssp             EECSSCCS
T ss_pred             EEcCcccc
Confidence            89988753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=81.31  E-value=1.2  Score=40.34  Aligned_cols=64  Identities=9%  Similarity=-0.007  Sum_probs=46.9

Q ss_pred             ecCCceEEEEEecCCceEEe-cC---C--CccCCCcEEEEccChHhHHHHH------------------hccccceeeee
Q 044014           12 IPSNETLLDLEPFNRMWHLS-EN---G--ESCGQFDVIIIARNGKCANRLL------------------RMQLSSIWTLL   67 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~---g--~~~G~FD~VVvA~Pa~QA~~Ll------------------~~~~~pcWalm   67 (127)
                      |=.++.|.+|++.++++.+. .+   +  ...-.+|.||+|+|.....+++                  ...|.+.=-+.
T Consensus       584 I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~P~LP~~k~~AI~~l~~g~v~KV~  663 (852)
T 2xag_A          584 IKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVV  663 (852)
T ss_dssp             EECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEE
T ss_pred             EEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHHHHHhhhcccccCCCCCHHHHHHHHcCCccceEEEE
Confidence            45789999999999999987 43   1  1122479999999999887631                  33456666788


Q ss_pred             eeccCCCC
Q 044014           68 AASEDPRL   75 (127)
Q Consensus        68 ~af~~pl~   75 (127)
                      +.|+++.-
T Consensus       664 L~F~~~fW  671 (852)
T 2xag_A          664 LCFDRVFW  671 (852)
T ss_dssp             EECSSCCS
T ss_pred             EEcCCccc
Confidence            89988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.86
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.39
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.08
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.48
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	83.63

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.86  E-value=0.00048  Score=47.80  Aligned_cols=45  Identities=18%  Similarity=0.274  Sum_probs=35.2

Q ss_pred             ecCCceEEEEEecCCceEEe--cCCC-ccCCCcEEEEccChHhHHHHH
Q 044014           12 IPSNETLLDLEPFNRMWHLS--ENGE-SCGQFDVIIIARNGKCANRLL   56 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~--~~g~-~~G~FD~VVvA~Pa~QA~~Ll   56 (127)
                      |=.+++|++|+.+++++.+.  .+|+ ..-.||.||+|+|+.++.+||
T Consensus       236 i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll  283 (347)
T d2ivda1         236 AHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLL  283 (347)
T ss_dssp             EESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHH
T ss_pred             cccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhc
Confidence            45789999999999999986  3332 234689999999999999998

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.39  E-value=0.056  Score=37.75  Aligned_cols=42  Identities=12%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             ecCCceEEEEEecCCceEEe-c--CCC-ccCCCcEEEEccChHhHH
Q 044014           12 IPSNETLLDLEPFNRMWHLS-E--NGE-SCGQFDVIIIARNGKCAN   53 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~--~g~-~~G~FD~VVvA~Pa~QA~   53 (127)
                      |=.+++|.+++.+++++.+. .  +++ ..-.+|.||+|+|.....
T Consensus       252 i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~  297 (370)
T d2iida1         252 VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR  297 (370)
T ss_dssp             EESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHT
T ss_pred             cccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHh
Confidence            34688999999999999885 2  221 233689999999987655

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.08  E-value=0.069  Score=39.64  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=28.3

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCc-----cCCCcEEEEcc
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGES-----CGQFDVIIIAR   47 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~-----~G~FD~VVvA~   47 (127)
                      |=.+|+|.++++.+++|.|+ .+++.     ...||+||+|+
T Consensus       130 I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~At  171 (335)
T d2gv8a1         130 IKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICN  171 (335)
T ss_dssp             EECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECC
T ss_pred             ccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcc
Confidence            56799999999999999996 33221     23599999997

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.073  Score=37.56  Aligned_cols=43  Identities=9%  Similarity=0.064  Sum_probs=35.0

Q ss_pred             ecCCceEEEEEecCCceEEe-cCCCccCCCcEEEEccChHhHHHH
Q 044014           12 IPSNETLLDLEPFNRMWHLS-ENGESCGQFDVIIIARNGKCANRL   55 (127)
Q Consensus        12 ~~~~t~V~~l~~~~~~W~L~-~~g~~~G~FD~VVvA~Pa~QA~~L   55 (127)
                      |-.+++|.+++.+++++.+. .+|+.. .+|.||+|+|.....++
T Consensus       224 i~~~~~v~~I~~~~~~v~v~~~~g~~~-~ad~vI~a~p~~~~~~~  267 (383)
T d2v5za1         224 VKLERPVIYIDQTRENVLVETLNHEMY-EAKYVISAIPPTLGMKI  267 (383)
T ss_dssp             EEESCCEEEEECSSSSEEEEETTSCEE-EESEEEECSCGGGGGGS
T ss_pred             EEecCcceEEEecCCeEEEEECCCCEE-ECCEEEECCCHHHHhhC
Confidence            34689999999999999997 777554 46999999998776654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.63  E-value=0.51  Score=30.52  Aligned_cols=38  Identities=18%  Similarity=0.406  Sum_probs=28.8

Q ss_pred             eeeecCCceEEEEEecCCc-eEEe-cCCCccCCCcEEEEcc
Q 044014            9 INIIPSNETLLDLEPFNRM-WHLS-ENGESCGQFDVIIIAR   47 (127)
Q Consensus         9 ~~~~~~~t~V~~l~~~~~~-W~L~-~~g~~~G~FD~VVvA~   47 (127)
                      |++. +++.|++++..+++ ..+. .+|+....||.||+|+
T Consensus        78 V~i~-~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          78 INIV-TFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             CEEE-CSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             CEEE-ECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            4443 57899999987654 5566 7887777899999985