Citrus Sinensis ID: 044015

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MSPSSRENHVQNPFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWKL
Secondary Structure (PSIPRED)
cccccccccccccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEccccEEcHHHHHHHHccccccccEEEEcccccccccccccccccccccEEEEcHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccEEcccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHccccccccccEEEEEccccEEEEEEccEEEEEEcccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEccEEEEcccccEEEEEEEEEEcccccccccccccccccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccEEccHHHHHHHHHcccccEEEEEcccccHHHHEEEccccccccHHHHEcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccEEEccccHHHHHHccccccEEEEccHcccccccccccHHHHHHHHHHHHccccHHHHHEEEEEccccEEEEEEEEEEEEEEEcccccHHHHccHHHHHHHHHccccccccccccccccccccccEEEEEEcEEEcccccccEEEEEEEEcccccccccccccccHHHccEEEEEccccccccccc
Coil and Loop (DISEMBL)
mspssrenhvqnpfKTWKLLvsplikpmdIVSLFMKSALFIFTVISIYLLFFYALSNklhystsncpqsqcdtnrLLSSQKKLLTRqnttlynepktnvsHIVFGiggsantwddRRHYCElwwkpgltrgfvwldekpnktwpatsppykvsqdtsrfqytswygtRSAIRIARIIKETFRlglgdvrwfvlgdddtVFFLENLVTVLGrydhnqmyyiggnsesveQDVIHSYtmayggggfaiSYPLAAELVRVLDGCIDRYAsfygsdqkvqgCMAEIgvpvtkelgfhqidirgdpygllaahplspivslhhldyvlpifpnmSQIESLKKLMGayktdpnravqqsfcydlsrnwtvsvswgytvqlypslETAKRLETAYLTFkswrswsdepftfntqyfspnpcerpiIYFLDRVqkvgkgkdqtltTYERVksehdkdcdnkayaPALAVKRFqvsastldpdhwkl
Flexible Loop (DISEMBL)
mspssrenhvqnpfktWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQCDTNRLLSSQKKLLTRQnttlynepktnvshIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNktwpatsppykvsqdtsrfqytsWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVgkgkdqtlttyervksehdkdcdNKAYAPALAVKrfqvsastldpdhwkl
Low Complexity Region (SEG)
MSPSSRENHVQNPFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWKL
Disordered region (IsUnstruct)
************PFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNC****************LLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWP*******VSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTY**************AYAPALAVKRF**************
Disordered Region (DISOPRED)
******************LLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCP********************************SHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQK*****DQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSASTL***HWKL
Disordered Region (DISEMBL)
**********QNPFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWKL
Disordered Region (DISPRO)
*********VQNPFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQC*TNRL*S***************EPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSASTLDP*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPSSRENHVQNPFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
224090783	505	predicted protein [Populus trichocarpa]	0.972	0.920	0.654	0.0
224140293	503	predicted protein [Populus trichocarpa]	0.958	0.910	0.649	0.0
225440444	519	PREDICTED: uncharacterized protein LOC10	0.981	0.903	0.617	1e-171
449440313	570	PREDICTED: uncharacterized protein LOC10	0.922	0.773	0.611	1e-166
18404516	532	uncharacterized protein [Arabidopsis tha	0.939	0.843	0.599	1e-163
297827331	532	hypothetical protein ARALYDRAFT_902953 [	0.945	0.849	0.602	1e-161
449527471	490	PREDICTED: uncharacterized LOC101203954	0.797	0.777	0.678	1e-160
356566543	569	PREDICTED: uncharacterized protein LOC10	0.928	0.780	0.598	1e-160
225449422	582	PREDICTED: uncharacterized protein LOC10	0.949	0.780	0.532	1e-138
296086194	492	unnamed protein product [Vitis vinifera]	0.949	0.922	0.532	1e-138

>gi|224090783|ref|XP_002309080.1| predicted protein [Populus trichocarpa] gi|222855056|gb|EEE92603.1| predicted protein [Populus trichocarpa]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/478 (65%), Positives = 380/478 (79%), Gaps = 13/478 (2%)

Query: 4   SSRENHVQNPFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYST 63
           SS    +Q+PFK WK LV P +K  D+ SLF+K+ + I T +SI L+F Y+  N+  +  
Sbjct: 2   SSPTPSIQDPFKAWKFLVLPTLKVSDVFSLFLKATIAICTFVSISLVF-YSFLNQSQWQP 60

Query: 64  SNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELW 123
             CP+       L+S  +K+ T  N +     KTN+SHI+FGIGGSA TW+ RRHY ELW
Sbjct: 61  --CPECH---KSLISDHRKI-TNGNVSGDFYEKTNISHILFGIGGSAKTWNKRRHYTELW 114

Query: 124 WKPGLTRGFVWLDEKP--NKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETF 181
           W P +TRG+VWLD+KP  N+TWP TSP YKVS DTSRF+YT  YG+RSA+RIARI+KE+F
Sbjct: 115 WMPKITRGYVWLDQKPPENRTWPETSPEYKVSADTSRFKYTCSYGSRSALRIARIVKESF 174

Query: 182 RLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGG 241
            LG  +VRWFV+GDDDTVFF+ENLV VL +YDHNQMYYIGGNSESVEQDVIHSYTMAYGG
Sbjct: 175 ELGEENVRWFVMGDDDTVFFIENLVMVLAKYDHNQMYYIGGNSESVEQDVIHSYTMAYGG 234

Query: 242 GGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDP 301
           GGFAISYPLA ELVRVLDGCIDRYASFYGSDQK+QGCM+EIGVP+TKELGFHQ+DIRGDP
Sbjct: 235 GGFAISYPLAKELVRVLDGCIDRYASFYGSDQKIQGCMSEIGVPLTKELGFHQVDIRGDP 294

Query: 302 YGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRN 361
           YGLLAAHPL+P+VSLHHLDYV  IFP +++I+S+KKL+ +YK DP RA+Q SFCYDL+RN
Sbjct: 295 YGLLAAHPLAPLVSLHHLDYVQSIFPKLNRIDSVKKLISSYKMDPGRALQYSFCYDLTRN 354

Query: 362 WTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYF 421
           W+VS SWGYT+Q++PSL TAK+LE+A+ TF++WRSWS+ PFTFNT+  S +PC RP++YF
Sbjct: 355 WSVSASWGYTIQIHPSLMTAKQLESAFRTFQTWRSWSNGPFTFNTRPMSQHPCLRPVVYF 414

Query: 422 LDRVQKVGKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSAST-LDPDHWKL 478
           LDRV++VG G   TLTTY+R   E  + CD   YAP LAVK   V+ ST L PD W L
Sbjct: 415 LDRVERVGDG---TLTTYKRSLQEFGQVCDLPEYAPVLAVKLVNVTTSTSLKPDIWNL 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140293|ref|XP_002323517.1| predicted protein [Populus trichocarpa] gi|224140295|ref|XP_002323518.1| predicted protein [Populus trichocarpa] gi|222868147|gb|EEF05278.1| predicted protein [Populus trichocarpa] gi|222868148|gb|EEF05279.1| predicted protein [Populus trichocarpa]

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/471 (64%), Positives = 372/471 (78%), Gaps = 13/471 (2%)

Query: 11  QNPFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQ 70
           Q+PFK WK LV P +K  DI SLF+K+ + I TV+SI L+F+  L+      +   P  +
Sbjct: 7   QDPFKAWKFLVLPTLKVSDIFSLFLKATIAICTVVSISLVFYSFLN-----PSQRLPCPE 61

Query: 71  CDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTR 130
           C  N++L S  + +T    + Y+  KTN+SHI+FGIGGSA TW+ RRHY E+WW P +TR
Sbjct: 62  C--NKILVSDHRKITNGEVSGYSYEKTNISHILFGIGGSAKTWNKRRHYTEVWWMPNITR 119

Query: 131 GFVWLDEKP--NKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDV 188
           G+VWLD+ P  N TWP TSPPYKVS DTSRF+YT  YG+RSA+RIARI+KE+F LGL +V
Sbjct: 120 GYVWLDQNPPGNDTWPLTSPPYKVSADTSRFKYTCSYGSRSALRIARIVKESFELGLENV 179

Query: 189 RWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISY 248
           RW VLGDDDTVFF+ENLVTVL +YDHNQMYYIGGNSESVEQD IHSYTMAYGGGGFAISY
Sbjct: 180 RWLVLGDDDTVFFIENLVTVLTKYDHNQMYYIGGNSESVEQDAIHSYTMAYGGGGFAISY 239

Query: 249 PLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAH 308
           PLA ELVRVLDGC+DRYASFYGSDQKVQGC++EIGVP+TKELGFHQ+DIRGDPYGLLAAH
Sbjct: 240 PLAKELVRVLDGCLDRYASFYGSDQKVQGCISEIGVPLTKELGFHQVDIRGDPYGLLAAH 299

Query: 309 PLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSW 368
           PL+P+VSLHHLDYV  IFP +S+ +S+ KL+ AYKTDP R +Q SFCYDL+RNW+VS SW
Sbjct: 300 PLAPLVSLHHLDYVQSIFPGLSRFDSVNKLITAYKTDPGRTLQYSFCYDLTRNWSVSASW 359

Query: 369 GYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKV 428
           GYT+QLYP+L TA +L+T + TF++WR W + PFTFNT+  + +PC RP++YFLDRV++V
Sbjct: 360 GYTIQLYPALLTAMQLQTVFRTFQTWRRWGEGPFTFNTRPMNQHPCLRPVVYFLDRVERV 419

Query: 429 GKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSAST-LDPDHWKL 478
           G G   TLTTY+R + E DK CD   YAP  AV+   V  ST L PD W +
Sbjct: 420 GDG---TLTTYKRSEDELDKVCDRPDYAPVYAVQLVNVITSTSLKPDIWNM 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440444|ref|XP_002271331.1| PREDICTED: uncharacterized protein LOC100242633 [Vitis vinifera] gi|297740328|emb|CBI30510.3| unnamed protein product [Vitis vinifera]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/479 (61%), Positives = 360/479 (75%), Gaps = 10/479 (2%)

Query: 1   MSPSSRENHVQNPFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLH 60
           MSP+ +   +Q+PFK WK LV    KP+D+  + MK  L IF +++   L     S    
Sbjct: 1   MSPTRQT--IQHPFKAWKFLVIATTKPVDVFKVLMKITL-IFCIVASISLI-SFFSLSSQ 56

Query: 61  YSTSNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYC 120
                CPQ  CD  R   S  + +T  +       +TN+SHI+FGIGGS  TW +RR YC
Sbjct: 57  SQWFGCPQ--CD-RRFGHSAYQKITDGDVGRLGYERTNISHILFGIGGSTATWSERRRYC 113

Query: 121 ELWWKPGLTRGFVWLDEKP--NKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIK 178
           ELWWKP +TRGFVWLDEKP  N+TWP TSPPY+VS DTS F+Y SW G+ SA+RIARI+K
Sbjct: 114 ELWWKPNVTRGFVWLDEKPAENETWPETSPPYQVSGDTSGFKYPSWSGSASAVRIARIVK 173

Query: 179 ETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMA 238
           E+F LGL +VRWFV+GDDDTVFF ENLV VL RYDHNQMYYIGG+SESVEQ++IHSY MA
Sbjct: 174 ESFELGLENVRWFVMGDDDTVFFTENLVAVLARYDHNQMYYIGGSSESVEQNMIHSYNMA 233

Query: 239 YGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIR 298
           +GGGGFAISYPLA ELVRVLD CIDRY  FYGSDQK+ GC++EIGVP+TKELGFHQ+DIR
Sbjct: 234 FGGGGFAISYPLATELVRVLDECIDRYYLFYGSDQKIHGCISEIGVPLTKELGFHQVDIR 293

Query: 299 GDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDL 358
           GDPYG LAAHP++P+VSLHH+D+V  +FP+M+QIESLK+L+ AY+ DP R +QQS CYD 
Sbjct: 294 GDPYGFLAAHPVAPLVSLHHIDFVESLFPSMTQIESLKRLVRAYEVDPGRTLQQSICYDF 353

Query: 359 SRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPI 418
           SRN +VSV+WGY+VQLYPSL T + LET + TF++WRSW  +PFTFNT+  S  PCERP+
Sbjct: 354 SRNRSVSVAWGYSVQLYPSLVTTEELETPFQTFQTWRSWGSQPFTFNTRPMSQEPCERPV 413

Query: 419 IYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWK 477
           IYFLDRVQ  G    QTLTTYER+  + +KDC+   YAP  AV  F VSA  L P+ W+
Sbjct: 414 IYFLDRVQMTGI-NGQTLTTYERLGFQPEKDCNQSHYAPLSAVHSFNVSAFQLRPESWE 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440313|ref|XP_004137929.1| PREDICTED: uncharacterized protein LOC101203954 [Cucumis sativus]

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/453 (61%), Positives = 352/453 (77%), Gaps = 12/453 (2%)

Query: 24  LIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQCDTNRLLSSQKKL 83
           + +P+D+ S  +K A+ + +V++ + LFFY     L +S  N     C      S+ +K+
Sbjct: 91  VARPIDVFSPLLK-AVLVLSVVASFSLFFY-----LTFSDQNSTCRGCYNAHRYSNHRKM 144

Query: 84  LTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTW 143
                     E  TN+SH+VFGIGGS  TW++RRHYCELWWK  +TRGFVW++EKP  +W
Sbjct: 145 KAFDA----GEQPTNISHLVFGIGGSVKTWNERRHYCELWWKKNVTRGFVWIEEKPEFSW 200

Query: 144 PATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLE 203
           P +SPPY+VS DTS+F YT WYG RSAIR+ARIIKET+ +GL +VRWFV+GDDDTVFF+E
Sbjct: 201 PESSPPYRVSDDTSKFNYTCWYGFRSAIRVARIIKETYEMGLENVRWFVMGDDDTVFFME 260

Query: 204 NLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCID 263
           NL+ +LGRYDHNQMYYIG NSESVEQDV+HSYTMAYGGGGFAISYPLA  LV++LDGCI+
Sbjct: 261 NLIDMLGRYDHNQMYYIGANSESVEQDVVHSYTMAYGGGGFAISYPLATVLVQILDGCIN 320

Query: 264 RYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVL 323
           RYA  YGSDQK+QGC++EIGVP+TKE GFHQ+DIRG+PYG+LAAHP++P+VSLHHLDYV 
Sbjct: 321 RYAHMYGSDQKIQGCISEIGVPLTKEHGFHQLDIRGNPYGILAAHPIAPLVSLHHLDYVQ 380

Query: 324 PIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKR 383
            IFP M+Q +SLKKL  AY+TDP+RA+Q +FCYD   NW+VS+SWGY+VQLYP L TAK 
Sbjct: 381 TIFPTMTQPDSLKKLHKAYETDPSRALQHTFCYDTVWNWSVSISWGYSVQLYPRLVTAKE 440

Query: 384 LETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVK 443
           +ETA+LT+++WR+ S+EPFTF+TQ  S +PC+RPI+YFL+  +++G  + QTLTTY+R  
Sbjct: 441 METAFLTYQTWRTNSNEPFTFDTQPVSSDPCQRPILYFLNSAERLGNRRWQTLTTYQRYV 500

Query: 444 SEHDKDCDNKAYAPALAVKRFQVSASTLDPDHW 476
            E    CD   YAPALAV+ F VSA   D   W
Sbjct: 501 EE--ASCDRPDYAPALAVEFFNVSALEFDRRLW 531

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404516|ref|NP_565869.1| uncharacterized protein [Arabidopsis thaliana] gi|3236255|gb|AAC23643.1| putative zinc finger protein [Arabidopsis thaliana] gi|330254346|gb|AEC09440.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 277/462 (59%), Positives = 351/462 (75%), Gaps = 13/462 (2%)

Query: 25  IKPMDIVSLFMKSALFIFTVISIYLLFFYAL---SNKLHYSTS--NCPQSQCDTNRLLSS 79
           +KP  ++SL  K    I   IS+ ++ FY +    +  H+ T          +     S+
Sbjct: 22  VKPSHVLSLVAKFFFTICIFISVAMISFYIIFFGCSDCHHITGLRRLGPENVNLTTNSSA 81

Query: 80  QKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKP 139
               + R N +      T++SHI FGIGGS  TW DR  Y ELWW+P +TRGF+WLDE+P
Sbjct: 82  SSSTIRRPNQS---SEATDISHIAFGIGGSIQTWRDRSRYSELWWRPNVTRGFIWLDEEP 138

Query: 140 --NKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDD 197
             N TW +TSPPY+VS DTSRF YT WYG+RSAIR+ARIIKETF LGL DVRWF++GDDD
Sbjct: 139 PLNMTWLSTSPPYQVSADTSRFSYTCWYGSRSAIRMARIIKETFELGLTDVRWFIMGDDD 198

Query: 198 TVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRV 257
           TVFF++NL+TVL +YDHNQMYYIGGNSESVEQD++HSY MAYGGGG AISYPLA ELV++
Sbjct: 199 TVFFVDNLITVLNKYDHNQMYYIGGNSESVEQDIVHSYAMAYGGGGIAISYPLAVELVKL 258

Query: 258 LDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLH 317
           LDGCIDRYAS YGSDQK++ C++EIGVP+TKELGFHQ+DIRG+PYGLLAAHP++P+V+LH
Sbjct: 259 LDGCIDRYASLYGSDQKIEACLSEIGVPLTKELGFHQVDIRGNPYGLLAAHPVAPLVTLH 318

Query: 318 HLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPS 377
           HLDYV PIFP  +QI++L++L+ AYKTDP+R +Q SFC+D +RNW VSVSWGYT+Q+YP+
Sbjct: 319 HLDYVDPIFPGTTQIDALRRLVSAYKTDPSRIIQHSFCHDQTRNWYVSVSWGYTIQIYPT 378

Query: 378 LETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLT 437
           L TAK LET +LTFKSWR+ S EPF+F+T+  S +PCERP++YFLDRV +VG G  QTLT
Sbjct: 379 LVTAKELETPFLTFKSWRTSSSEPFSFDTRPISEDPCERPLVYFLDRVYEVGSG--QTLT 436

Query: 438 TYER-VKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWKL 478
           TY + V+      C++  Y+ A  V+   VS +TL PD WK+
Sbjct: 437 TYRKHVEVGESTQCNSPDYSRANPVEFIDVSTTTLTPDLWKM 478

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827331|ref|XP_002881548.1| hypothetical protein ARALYDRAFT_902953 [Arabidopsis lyrata subsp. lyrata] gi|297327387|gb|EFH57807.1| hypothetical protein ARALYDRAFT_902953 [Arabidopsis lyrata subsp. lyrata]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/458 (60%), Positives = 348/458 (75%), Gaps = 6/458 (1%)

Query: 25  IKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQCDTNRLLSSQKKLL 84
           +KP  ++SL  K    I  VI   ++FFY + +            +   + + S+     
Sbjct: 22  VKPSHVLSLVAKFFFTICIVIFFAMIFFYIIFSGCSDCHHINGHRRLGPDNVNSTTNSSA 81

Query: 85  TRQNTTLYNEPK--TNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKP--N 140
           +  N    N+    T++SHIVFGIGGS  TW DR  Y ELWW+P +TRGFVWL+E+P  N
Sbjct: 82  SSLNILGQNQSSEATDISHIVFGIGGSIQTWRDRSRYSELWWRPNVTRGFVWLEEEPPLN 141

Query: 141 KTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVF 200
            TW  TSPPY+VS DTSRF YT W+G+RSAIR+ARIIKE+F LGL +VRWFV+GDDDTVF
Sbjct: 142 MTWLPTSPPYQVSADTSRFNYTCWFGSRSAIRMARIIKESFGLGLTNVRWFVMGDDDTVF 201

Query: 201 FLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDG 260
           F++NLVTVL +YDHNQMYYIGGNSESVEQD++HSY MAYGGGG AISYPLA ELV++LDG
Sbjct: 202 FVDNLVTVLNKYDHNQMYYIGGNSESVEQDIVHSYAMAYGGGGIAISYPLAVELVKILDG 261

Query: 261 CIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLD 320
           CIDRYAS YGSDQK++ C++EIGVP+TKELGFHQ+DIRG+PYGLLAAHP++P+V+LHHLD
Sbjct: 262 CIDRYASLYGSDQKIEACISEIGVPLTKELGFHQVDIRGNPYGLLAAHPVAPLVTLHHLD 321

Query: 321 YVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLET 380
           YV PIFP  +QI++L++L+ AYKTDP R +Q SFC+D +R+W VSVSWGYT+Q+YPSL T
Sbjct: 322 YVDPIFPATTQIDALRRLVSAYKTDPRRILQHSFCHDPTRDWFVSVSWGYTIQIYPSLVT 381

Query: 381 AKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYE 440
           AK LET +LTFKSWR+ S EPF+F+T+  S +PCERPI+YFLDRV +VG G  QTLTTY 
Sbjct: 382 AKELETPFLTFKSWRTSSSEPFSFDTRPISEDPCERPIVYFLDRVYEVGSG--QTLTTYR 439

Query: 441 RVKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWKL 478
           +     +  C +  Y+ A +V+   VSA+T  PD WK+
Sbjct: 440 KHVDVGETQCKSLDYSRANSVEFIDVSATTWMPDLWKM 477

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527471|ref|XP_004170734.1| PREDICTED: uncharacterized LOC101203954 [Cucumis sativus]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 260/383 (67%), Positives = 320/383 (83%), Gaps = 2/383 (0%)

Query: 94  EPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVS 153
           E  TN+SH+VFGIGGS  TW++RRHYCELWWK  +TRGFVW++EKP  +WP +SPPY+VS
Sbjct: 71  EQPTNISHLVFGIGGSVKTWNERRHYCELWWKKNVTRGFVWIEEKPEFSWPESSPPYRVS 130

Query: 154 QDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYD 213
            DTS+F YT WYG RSAIR+ARIIKET+ +GL +VRWFV+GDDDTVFF+ENL+ +LGRYD
Sbjct: 131 DDTSKFNYTCWYGFRSAIRVARIIKETYEMGLENVRWFVMGDDDTVFFMENLIDMLGRYD 190

Query: 214 HNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQ 273
           HNQMYYIG NSESVEQDV+HSYTMAYGGGGFAISYPLA  LV++LDGCI+RYA  YGSDQ
Sbjct: 191 HNQMYYIGANSESVEQDVVHSYTMAYGGGGFAISYPLATVLVQILDGCINRYAHMYGSDQ 250

Query: 274 KVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIE 333
           K+QGC++EIGVP+TKE GFHQ+DIRG+PYG+LAAHP++P+VSLHHLDYV  IFP M+Q +
Sbjct: 251 KIQGCISEIGVPLTKEHGFHQLDIRGNPYGILAAHPIAPLVSLHHLDYVQTIFPTMTQPD 310

Query: 334 SLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKS 393
           SLKKL  AY+ DP+RA+Q +FCYD   NW+VS+SWGY+VQLYP L TAK +ETA+LT+++
Sbjct: 311 SLKKLHKAYEMDPSRALQHTFCYDTVWNWSVSISWGYSVQLYPRLVTAKEMETAFLTYQT 370

Query: 394 WRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCDNK 453
           WR+ S+EPFTF+TQ  S +PC+RPI+YFL+  +++G  + QTLTTY+R   E    CD  
Sbjct: 371 WRTNSNEPFTFDTQPVSSDPCQRPILYFLNSAERLGNRRWQTLTTYQRYVEE--ASCDRP 428

Query: 454 AYAPALAVKRFQVSASTLDPDHW 476
            YAPALAV+ F VSA   D   W
Sbjct: 429 DYAPALAVEFFNVSALEFDRRLW 451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566543|ref|XP_003551490.1| PREDICTED: uncharacterized protein LOC100813750 [Glycine max]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/463 (59%), Positives = 345/463 (74%), Gaps = 19/463 (4%)

Query: 17  WKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQCDTNRL 76
           WK L  P+IKP +++ LF+K+ + +  ++ I L  F  L N+  Y  +N           
Sbjct: 86  WKTLRFPIIKPRELLLLFLKAGIAVSMLLIITL--FITLYNQPFYPNNN----------- 132

Query: 77  LSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLD 136
            ++ K +L  Q  T   +  TN+SH++FGIGGS+ TW  RR Y ELWW+PG TRGFVWL+
Sbjct: 133 HTTMKYML--QQKTPEEKASTNISHLLFGIGGSSATWQTRRQYSELWWRPGATRGFVWLE 190

Query: 137 EKP--NKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLG 194
             P  N TWP TSPPY+VS DTS F+YT  YG+RSAIRIARI+KE+F LGL +VRWFV+G
Sbjct: 191 SHPPDNTTWPETSPPYRVSGDTSVFKYTCSYGSRSAIRIARIVKESFELGLENVRWFVMG 250

Query: 195 DDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAEL 254
           DDDTVFF +NLVTVL +YDHN+MYY+GGNSESVEQDVIH YTMA+GGGGFAISYPLA EL
Sbjct: 251 DDDTVFFTDNLVTVLSKYDHNEMYYVGGNSESVEQDVIHFYTMAFGGGGFAISYPLAKEL 310

Query: 255 VRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIV 314
           VR+LDGCIDRYA FYGSDQK+Q C++EIGV VTKE GFHQ+DI G+PYGLLAAHP++P+V
Sbjct: 311 VRILDGCIDRYAEFYGSDQKIQSCISEIGVQVTKEPGFHQVDIHGNPYGLLAAHPVAPLV 370

Query: 315 SLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQL 374
           SLHHLDYV PIFPN +++ ++KKL+ AYK DP R +Q+SFCYDL RNW+VSVSWGY+V+L
Sbjct: 371 SLHHLDYVDPIFPNTTRVNAVKKLITAYKMDPGRTLQKSFCYDLRRNWSVSVSWGYSVEL 430

Query: 375 YPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQ 434
           YPSL T+K LETA+ TF++WR+W D PFTFNT+  S + CERP +Y LD V+ V    D 
Sbjct: 431 YPSLRTSKELETAFETFRTWRTWHDGPFTFNTRPVSVDTCERPHVYVLDGVRNV--DGDM 488

Query: 435 TLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWK 477
           T + Y +      K+C  + YA AL V+   V AS   PD WK
Sbjct: 489 TRSWYRKTVDASGKECAREEYARALEVQYVDVYASRFVPDKWK 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449422|ref|XP_002277889.1| PREDICTED: uncharacterized protein LOC100244414 [Vitis vinifera]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/468 (53%), Positives = 334/468 (71%), Gaps = 14/468 (2%)

Query: 12  NPFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQC 71
            PFK    +V  + KP DI+   ++ A+ IF V S+ L+ + A++ +  +       +Q 
Sbjct: 10  GPFKACNFVVFSIEKPSDILFRVIRCAVLIFLVTSLSLVLYSAVTGQTRWFPFPEGAAQ- 68

Query: 72  DTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRG 131
                  S     T    +  N  +TN+SH+ FGI GS  TW DRRHY ELWWKP ++RG
Sbjct: 69  ------YSGGPYGTTDYISGDNLGETNISHVQFGIAGSVATWKDRRHYSELWWKPNVSRG 122

Query: 132 FVWLDEKPNKT--WPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVR 189
           +VWLD KP+    WP +SPPY+VS+D SRF+Y+S   ++SA+RIARI+ E+FR+GL +VR
Sbjct: 123 YVWLDGKPDAAVPWPKSSPPYRVSEDWSRFKYSS---SQSAVRIARIVSESFRVGLPNVR 179

Query: 190 WFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYP 249
           WFV+GDDDTVFF ENLV+VL +YDH Q+YYIG NSESVEQDV+HSY MA+GGGGFA+SY 
Sbjct: 180 WFVMGDDDTVFFTENLVSVLAKYDHRQVYYIGANSESVEQDVMHSYGMAFGGGGFAVSYG 239

Query: 250 LAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHP 309
           LAA+L  +LDGC+DRY  FYGSDQ++  C++EIGV +T E GFHQ+DIRGDPYGLLAAHP
Sbjct: 240 LAAKLATMLDGCLDRYYRFYGSDQRIWACVSEIGVSLTAERGFHQMDIRGDPYGLLAAHP 299

Query: 310 LSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWG 369
           ++P+VSLHH+D V P+FP+ + ++SLK L  AY+ DP R +QQSFCYD  RNW++SVSWG
Sbjct: 300 VAPLVSLHHIDAVSPMFPSHTHLDSLKSLFRAYQVDPARILQQSFCYDHRRNWSISVSWG 359

Query: 370 YTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVG 429
           YT QLYP    A  L+    TF++WRS S  PFTFNT+  + +PCE+P+IYFL+ V++V 
Sbjct: 360 YTAQLYPWFVPAHILDKPLQTFQTWRSRSQGPFTFNTRQVTSDPCEQPVIYFLEEVREVA 419

Query: 430 KGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWK 477
           KG  +T+++Y R  ++ +K C    YAP +AV+R +VS   + P  WK
Sbjct: 420 KG--ETMSSYGRAVAQPEKACQRPDYAPVMAVQRIKVSTLKMSPQDWK 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086194|emb|CBI31635.3| unnamed protein product [Vitis vinifera]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/468 (53%), Positives = 334/468 (71%), Gaps = 14/468 (2%)

Query: 12  NPFKTWKLLVSPLIKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLHYSTSNCPQSQC 71
            PFK    +V  + KP DI+   ++ A+ IF V S+ L+ + A++ +  +       +Q 
Sbjct: 10  GPFKACNFVVFSIEKPSDILFRVIRCAVLIFLVTSLSLVLYSAVTGQTRWFPFPEGAAQ- 68

Query: 72  DTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRG 131
                  S     T    +  N  +TN+SH+ FGI GS  TW DRRHY ELWWKP ++RG
Sbjct: 69  ------YSGGPYGTTDYISGDNLGETNISHVQFGIAGSVATWKDRRHYSELWWKPNVSRG 122

Query: 132 FVWLDEKPNKT--WPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVR 189
           +VWLD KP+    WP +SPPY+VS+D SRF+Y+S   ++SA+RIARI+ E+FR+GL +VR
Sbjct: 123 YVWLDGKPDAAVPWPKSSPPYRVSEDWSRFKYSS---SQSAVRIARIVSESFRVGLPNVR 179

Query: 190 WFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYP 249
           WFV+GDDDTVFF ENLV+VL +YDH Q+YYIG NSESVEQDV+HSY MA+GGGGFA+SY 
Sbjct: 180 WFVMGDDDTVFFTENLVSVLAKYDHRQVYYIGANSESVEQDVMHSYGMAFGGGGFAVSYG 239

Query: 250 LAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHP 309
           LAA+L  +LDGC+DRY  FYGSDQ++  C++EIGV +T E GFHQ+DIRGDPYGLLAAHP
Sbjct: 240 LAAKLATMLDGCLDRYYRFYGSDQRIWACVSEIGVSLTAERGFHQMDIRGDPYGLLAAHP 299

Query: 310 LSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWG 369
           ++P+VSLHH+D V P+FP+ + ++SLK L  AY+ DP R +QQSFCYD  RNW++SVSWG
Sbjct: 300 VAPLVSLHHIDAVSPMFPSHTHLDSLKSLFRAYQVDPARILQQSFCYDHRRNWSISVSWG 359

Query: 370 YTVQLYPSLETAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVG 429
           YT QLYP    A  L+    TF++WRS S  PFTFNT+  + +PCE+P+IYFL+ V++V 
Sbjct: 360 YTAQLYPWFVPAHILDKPLQTFQTWRSRSQGPFTFNTRQVTSDPCEQPVIYFLEEVREVA 419

Query: 430 KGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWK 477
           KG  +T+++Y R  ++ +K C    YAP +AV+R +VS   + P  WK
Sbjct: 420 KG--ETMSSYGRAVAQPEKACQRPDYAPVMAVQRIKVSTLKMSPQDWK 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
TAIR|locus:2040711	532	AT2G37730 [Arabidopsis thalian	0.943	0.847	0.604	4.4e-155
TAIR|locus:2080797	505	AT3G11420 [Arabidopsis thalian	0.780	0.738	0.542	2.6e-111
TAIR|locus:2177896	524	AT5G41460 [Arabidopsis thalian	0.788	0.719	0.493	1e-98
TAIR|locus:2117949	526	AT4G23490 [Arabidopsis thalian	0.903	0.821	0.440	2e-97
TAIR|locus:2026514	541	AT1G07850 [Arabidopsis thalian	0.815	0.720	0.457	2.2e-96
TAIR|locus:2025416	478	AT1G01570 [Arabidopsis thalian	0.893	0.893	0.448	8.7e-95
TAIR|locus:2126076	785	AT4G00300 [Arabidopsis thalian	0.891	0.542	0.450	3.4e-94
TAIR|locus:2128283	507	AT4G11350 [Arabidopsis thalian	0.851	0.802	0.439	2.4e-92
TAIR|locus:2129845	488	AT4G15240 [Arabidopsis thalian	0.711	0.696	0.492	4.9e-85
TAIR|locus:2196673	548	AT1G33250 [Arabidopsis thalian	0.807	0.704	0.436	8e-85

TAIR|locus:2040711 AT2G37730 [Arabidopsis thaliana (taxid:3702)]

 Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
 Identities = 278/460 (60%), Positives = 352/460 (76%)

Query:    25 IKPMDIVSLFMKSALFIFTVISIYLLFFYAL---SNKLHYSTSNCPQSQCDTNRLLSSQK 81
             +KP  ++SL  K    I   IS+ ++ FY +    +  H+ T        + N   +S  
Sbjct:    22 VKPSHVLSLVAKFFFTICIFISVAMISFYIIFFGCSDCHHITGLRRLGPENVNLTTNSSA 81

Query:    82 KLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKP-- 139
                T +     +E  T++SHI FGIGGS  TW DR  Y ELWW+P +TRGF+WLDE+P  
Sbjct:    82 SSSTIRRPNQSSEA-TDISHIAFGIGGSIQTWRDRSRYSELWWRPNVTRGFIWLDEEPPL 140

Query:   140 NKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTV 199
             N TW +TSPPY+VS DTSRF YT WYG+RSAIR+ARIIKETF LGL DVRWF++GDDDTV
Sbjct:   141 NMTWLSTSPPYQVSADTSRFSYTCWYGSRSAIRMARIIKETFELGLTDVRWFIMGDDDTV 200

Query:   200 FFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLD 259
             FF++NL+TVL +YDHNQMYYIGGNSESVEQD++HSY MAYGGGG AISYPLA ELV++LD
Sbjct:   201 FFVDNLITVLNKYDHNQMYYIGGNSESVEQDIVHSYAMAYGGGGIAISYPLAVELVKLLD 260

Query:   260 GCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHL 319
             GCIDRYAS YGSDQK++ C++EIGVP+TKELGFHQ+DIRG+PYGLLAAHP++P+V+LHHL
Sbjct:   261 GCIDRYASLYGSDQKIEACLSEIGVPLTKELGFHQVDIRGNPYGLLAAHPVAPLVTLHHL 320

Query:   320 DYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLE 379
             DYV PIFP  +QI++L++L+ AYKTDP+R +Q SFC+D +RNW VSVSWGYT+Q+YP+L 
Sbjct:   321 DYVDPIFPGTTQIDALRRLVSAYKTDPSRIIQHSFCHDQTRNWYVSVSWGYTIQIYPTLV 380

Query:   380 TAKRLETAYLTFKSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTY 439
             TAK LET +LTFKSWR+ S EPF+F+T+  S +PCERP++YFLDRV +VG G  QTLTTY
Sbjct:   381 TAKELETPFLTFKSWRTSSSEPFSFDTRPISEDPCERPLVYFLDRVYEVGSG--QTLTTY 438

Query:   440 ER-VKSEHDKDCDNKAYAPALAVKRFQVSASTLDPDHWKL 478
              + V+      C++  Y+ A  V+   VS +TL PD WK+
Sbjct:   439 RKHVEVGESTQCNSPDYSRANPVEFIDVSTTTLTPDLWKM 478

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2080797 AT3G11420 [Arabidopsis thaliana (taxid:3702)]

 Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
 Identities = 209/385 (54%), Positives = 269/385 (69%)

Query:    97 TNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEK---P-NKTWPATSPPYKV 152
             TN+SHI F I G+A TW DR  Y  LWW+   TRGFVWLDE    P N +    S P +V
Sbjct:    91 TNISHIFFSIAGAAETWIDRSQYISLWWR-NTTRGFVWLDEPVKIPENHSDVRFSIPTRV 149

Query:   153 SQDT-SRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGR 211
             S    +RF+++S   +R+A+RIARII +++RL L +VRWFV+GDDDTVFF ENLV VL +
Sbjct:   150 SDPGWTRFKFSS---SRAAVRIARIIWDSYRLNLPNVRWFVMGDDDTVFFTENLVKVLSK 206

Query:   212 YDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGS 271
             YDH QM+YIGGNSESVEQDV+H+Y MA+GGGGFA+S PLAA L   +D C+ RY  FYGS
Sbjct:   207 YDHEQMWYIGGNSESVEQDVMHAYDMAFGGGGFALSRPLAARLAAAMDDCLQRYFYFYGS 266

Query:   272 DQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQ 331
             DQ++  C++EIGVP T+E GFHQ+DIRGDPYG LAAHPL+P+VSLHHL Y+ P+FPN + 
Sbjct:   267 DQRIASCISEIGVPFTEERGFHQLDIRGDPYGFLAAHPLAPLVSLHHLVYLDPMFPNKNP 326

Query:   332 IESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTF 391
             IESL+ LM  Y  DPNR +QQ  C+D  R W++S+SWGYT+Q+Y    TA  L T   TF
Sbjct:   327 IESLQTLMKPYTLDPNRILQQINCHDRKRQWSISISWGYTIQIYTYFLTATELTTPLQTF 386

Query:   392 KSWRSWSDEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCD 451
             K+WRS SD PF FNT+   P+PCERP+ YF+D  + V   +D    T+  +  ++   C 
Sbjct:   387 KTWRSSSDGPFVFNTRPLKPDPCERPVTYFMDGAEDV---RDSGTKTWYSIGDKNYGHCG 443

Query:   452 NKAYAPALAVKRFQVSASTLDPDHW 476
                +     VKR  V++   DP++W
Sbjct:   444 KIEHTRLTKVKRILVTSMKTDPEYW 468

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2177896 AT5G41460 [Arabidopsis thaliana (taxid:3702)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 191/387 (49%), Positives = 259/387 (66%)

Query:    95 PKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKP----NKTWPATSPPY 150
             P+T   H+VFGI  SA  W  R+ Y ++W+KP   R +VWL EKP    ++    + PP 
Sbjct:   108 PQTGFQHVVFGIAASARLWKQRKEYIKIWYKPNQMRSYVWL-EKPVTEEDEEDEISLPPV 166

Query:   151 KVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLG 210
             K+S DTS+F Y +  G RSAIRI+RI+ ET +LGL DVRWFV+GDDDTVF  ENL+ VL 
Sbjct:   167 KISGDTSKFPYKNKQGHRSAIRISRIVTETLKLGLKDVRWFVMGDDDTVFVAENLIRVLR 226

Query:   211 RYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYG 270
             +YDHNQMYYIG  SES  Q++  SY MAYGGGGFAISYPLA  L ++ D CI RY + YG
Sbjct:   227 KYDHNQMYYIGSLSESHLQNIYFSYGMAYGGGGFAISYPLAVALSKMQDRCIKRYPALYG 286

Query:   271 SDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMS 330
             SD ++Q CMAE+GVP+TKELGFHQ D+ G+ +GLLAAHP++P+V+LHHLD V PIFPNM+
Sbjct:   287 SDDRMQACMAELGVPLTKELGFHQYDVYGNLFGLLAAHPVAPLVTLHHLDVVEPIFPNMT 346

Query:   331 QIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLT 390
             ++++LK L    K D    +QQS CYD  R WTVSVSWG+ VQ++  + +A+ +E    T
Sbjct:   347 RVDALKHLQVPAKLDSAGLMQQSICYDKRRKWTVSVSWGFAVQIFRGIFSAREIEMPSRT 406

Query:   391 FKSWRSWSD-EPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKD 449
             F +W   +D   + FNT+  S +PC++P ++++    +V +  + T++ YE  +  H  +
Sbjct:   407 FLNWYRRADYTAYAFNTRPVSRHPCQKPFVFYMTST-RVHRVTNMTVSRYEIHRVAHP-E 464

Query:   450 CDNKAYAPALAVKRFQVSASTLDPDHW 476
             C  K   P+  +K   V     DP  W
Sbjct:   465 CRWKMANPS-DIKTVIVYKKP-DPHLW 489

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2117949 AT4G23490 [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 199/452 (44%), Positives = 277/452 (61%)

Query:    41 IFTVISIYLLFFYALSNKLHYSTSNCPQSQCDTN---RLLSSQKKLLTRQNTTLYNEPKT 97
             +FT I IY+L   + S     STS    S   TN    + S    L +R+      E  T
Sbjct:    45 VFTYI-IYMLKLVSTSRSCDDSTSFTTVSALSTNVSSNVSSLSTSLASRRRNWEEEEEDT 103

Query:    98 ------NVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATS---- 147
                   +++H+VFGI  S+  W  R+ Y ++W+KP   RG+VWLD++  K+         
Sbjct:   104 VVDKLTDLNHVVFGIAASSKLWKQRKEYIKIWYKPKRMRGYVWLDKEVKKSLSDDDDEKL 163

Query:   148 -PPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLV 206
              PP K+S  T+ F YT+  G RSA+RI+RI+ ET RLG  +VRWFV+GDDDTVF ++NL+
Sbjct:   164 LPPVKISGGTASFPYTNKQGQRSALRISRIVSETLRLGPKNVRWFVMGDDDTVFVIDNLI 223

Query:   207 TVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYA 266
              VL +YDH QMYYIG  SES  Q++  SY MAYGGGGFAISYPLA  L ++ D CI RY 
Sbjct:   224 RVLRKYDHEQMYYIGSLSESHLQNIFFSYGMAYGGGGFAISYPLAKALSKMQDRCIQRYP 283

Query:   267 SFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIF 326
             + YGSD ++Q CMAE+GVP+TKELGFHQ D+ G+ +GLLAAHP++P VS+HHLD V PIF
Sbjct:   284 ALYGSDDRMQACMAELGVPLTKELGFHQYDVYGNLFGLLAAHPVTPFVSMHHLDVVEPIF 343

Query:   327 PNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLET 386
             PNM+++ +LKK+    K D    +QQS CYD  ++WT+SVSWGY VQ++  + + + +E 
Sbjct:   344 PNMTRVRALKKITEPMKLDSAGLLQQSICYDKHKSWTISVSWGYAVQIFRGIFSPREMEM 403

Query:   387 AYLTFKSWRSWSD-EPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSE 445
                TF +W   +D   + FNT+  S NPC++P ++++    K  +  + T++ Y   +  
Sbjct:   404 PSRTFLNWYKRADYTAYAFNTRPVSRNPCQKPFVFYMSST-KFDQQLNTTVSEYTIHRVS 462

Query:   446 HDKDCDNKAYAPALAVKRFQVSASTLDPDHWK 477
             H   C  K   PA  +    V     DP  W+
Sbjct:   463 HPS-CRWKMTNPA-EINTIVVYKKP-DPHLWE 491

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2026514 AT1G07850 [Arabidopsis thaliana (taxid:3702)]

 Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
 Identities = 182/398 (45%), Positives = 257/398 (64%)

Query:    54 ALSNKLHYSTSNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTW 113
             +L +K + S+S  P+ + D    +  +   L  Q   ++N   T + HIVFGI  S+  W
Sbjct:    86 SLVDKANSSSSVVPEEEDDD---VPPRVPALYPQRPRMFN---TTLDHIVFGIAASSVLW 139

Query:   114 DDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRI 173
             + R+ Y + WW+PG TRG VW+D++         P  ++SQDTSRF+YT   G RSA+RI
Sbjct:   140 ETRKEYIKSWWRPGKTRGVVWIDKRVRTYRNDPLPEIRISQDTSRFRYTHPVGDRSAVRI 199

Query:   174 ARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIH 233
             +R++ ET RLG   VRWFV+GDDDTVF ++N+V VL +YDH Q YY+G +SE+  Q++  
Sbjct:   200 SRVVTETLRLGKKGVRWFVMGDDDTVFVVDNVVNVLSKYDHTQFYYVGSSSEAHVQNIFF 259

Query:   234 SYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFH 293
             SY+MA+GGGGFAISY LA EL+R+ D CI RY   YGSD ++Q CM E+GVP+TKE GFH
Sbjct:   260 SYSMAFGGGGFAISYALALELLRMQDRCIQRYPGLYGSDDRIQACMTELGVPLTKEPGFH 319

Query:   294 QIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQS 353
             Q D+ GD  GLL AHP++P+VSLHH+D V PIFP M +  +L+ LM +   DP    QQS
Sbjct:   320 QYDVYGDLLGLLGAHPVAPLVSLHHIDVVQPIFPKMKRSRALRHLMSSAVLDPASIFQQS 379

Query:   354 FCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSDE-PFTFNTQYFSPN 412
              CYD +R W++SVSWG+ VQ+   + + + LE    TF +W   +D   + FNT+  S +
Sbjct:   380 ICYDQNRFWSISVSWGFVVQIIRGIISPRELEMPSRTFLNWFRKADYIGYAFNTRPVSRH 439

Query:   413 PCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDC 450
             PC+RP +++L+   K  +G+ Q +  Y   K+     C
Sbjct:   440 PCQRPFVFYLNSA-KYDEGRRQVIGYYNLDKTRRIPGC 476

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2025416 AT1G01570 [Arabidopsis thaliana (taxid:3702)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 203/453 (44%), Positives = 269/453 (59%)

Query:    35 MKSALFIFTVISIYLLF-FYALSNKLHYSTSNCPQSQCDTNRLLSSQKKLLTRQNTTLYN 93
             M   +F+   I   L F FY L+     S+S+ P  +   + ++S    +         +
Sbjct:     1 MSRLIFLILAILFSLQFVFYPLN---FISSSSQPLIKFSVSPVVSGSGSV---------H 48

Query:    94 EP-KTNVSHIVFGIGGSANTWDDRRHYCELWWKP-GLTRGFVWLDE--KPNKTWPATSPP 149
             EP +T + H+VFGI  SA  W  R+ Y +LWWKP G   G VWLD+    N     T PP
Sbjct:    49 EPDQTELKHVVFGIAASAKFWKHRKDYVKLWWKPNGEMNGVVWLDQHINQNDNVSKTLPP 108

Query:   150 YKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLG-----DVRWFVLGDDDTVFFLEN 204
              ++S DTSRFQY    G RSAIRI RI+ ET RL  G     +VRW V+GDDDTVFF EN
Sbjct:   109 IRISSDTSRFQYRYPKGLRSAIRITRIVSETVRLLNGTELEKNVRWIVMGDDDTVFFPEN 168

Query:   205 LVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDR 264
             LV VL +YDHNQ YYIG +SES  Q++  SY MAYGGGGFAISYPLA  L ++ D CI R
Sbjct:   169 LVKVLRKYDHNQFYYIGSSSESHIQNLKFSYGMAYGGGGFAISYPLAKALEKMQDRCIQR 228

Query:   265 YASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLP 324
             Y+  YGSD ++  CM+E+GVP+TKE+GFHQID+ G   GLL+AHPL+P+VS+HHLD V P
Sbjct:   229 YSELYGSDDRIHACMSELGVPLTKEVGFHQIDLYGKLLGLLSAHPLAPLVSIHHLDLVDP 288

Query:   325 IFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRL 384
             +FPNM ++ ++++ M   K D     QQS CYD    WTVSVSWGYTVQ+   + +A+ +
Sbjct:   289 VFPNMGRVNAMRRFMVPAKLDSPSLAQQSICYDADHRWTVSVSWGYTVQIIRGVLSAREM 348

Query:   385 ETAYLTFKSWRSWSDE-PFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVK 443
                  TF  W   +DE  + FNT+  + + C+RP +Y+L           +T + Y R  
Sbjct:   349 VIPTRTFIDWYKQADERSYAFNTRPIAKSACQRPRVYYLSNALP-DLALRRTASEYVRWY 407

Query:   444 SEHDKDCDNKAYAPALAVKRFQVSASTLDPDHW 476
                + +CD     P+   +R  V     DPD W
Sbjct:   408 DMWEPECDWDMSDPS-EFERVIVYKKP-DPDRW 438

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2126076 AT4G00300 [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 3.4e-94, Sum P(2) = 3.4e-94
 Identities = 204/453 (45%), Positives = 268/453 (59%)

Query:    37 SALFIFTVISIYLLFFYALSNKLH-YSTSNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEP 95
             +A+ +F +   YLL+ ++  + L+ YS S  P      N LL    +L + Q      E 
Sbjct:    27 TAIVVFLIFVSYLLYSFSFISFLNPYSPSKSP------NSLLVPVIRLGSGQTP----EE 76

Query:    96 KTNVSHIVFGIGGSANTWDDRRHYCELWWKP-GLTRGFVWLDEKPNKTWPATS--PPYKV 152
             +T + HIVFGI  S++ W  RR Y + WWKP G+  G VWLD+  N T  ++S  P  ++
Sbjct:    77 QTELKHIVFGIAASSDLWKHRREYVKTWWKPNGVMNGAVWLDKPINDTVSSSSALPQIRI 136

Query:   153 SQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLG-----DVRWFVLGDDDTVFFLENLVT 207
             S DTS F+Y    G RSAIRI RI+ ET R+  G     +VRW V+GDDDTVFF ENLV 
Sbjct:   137 SSDTSSFKYRYRNGHRSAIRITRIVSETVRMLNGTEAERNVRWVVMGDDDTVFFTENLVR 196

Query:   208 VLGRYDHNQMYYIGGNSESVEQDVIH--SYTMAYGGGGFAISYPLAAELVRVLDGCIDRY 265
             VL +YDH Q YYIG  SES  Q+ +H  SY MAYGGGGFAISYPLA  L ++ D CI+RY
Sbjct:   197 VLRKYDHKQFYYIGAPSESHLQN-LHQFSYGMAYGGGGFAISYPLAKVLEKMQDRCIERY 255

Query:   266 ASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPI 325
             +  YGSD ++  CMAE+GVP+TKE+GFHQ D+ G+  GLL+ HP +PIVS+HHLD V PI
Sbjct:   256 SDLYGSDDRIHACMAELGVPLTKEVGFHQFDVYGNLLGLLSVHPQAPIVSIHHLDVVDPI 315

Query:   326 FPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLE 385
             FP  +++ +LKKLM   K D    VQQS CYD S  WT+S+SWGYTVQ+  +   A+ +E
Sbjct:   316 FPKTNRVNALKKLMIPAKLDSASLVQQSVCYDKSHQWTMSISWGYTVQITRTYMPARMME 375

Query:   386 TAYLTFKSWRSWSD-EPFTFNTQYFSPNPCERP-IIYFLDRVQKVGKGKDQTLTTYERVK 443
                 TF  W   SD     FNT+  +   C+RP + YF             T++ Y R  
Sbjct:   376 VPTRTFNDWHLRSDFTNLAFNTRPVTWTDCQRPRVFYFSHAFSNSSSSDTTTISQYLRHD 435

Query:   444 SEHDKDCDNKAYAPALAVKRFQVSASTLDPDHW 476
               + K C+     P+   + F     T  PD W
Sbjct:   436 EWYPK-CEWGIADPSEINQIFVYKKPT--PDRW 465

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2128283 AT4G11350 [Arabidopsis thaliana (taxid:3702)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 186/423 (43%), Positives = 268/423 (63%)

Query:    31 VSLFMKSALFIFTVISIYLLFF-YALSNKLHYSTSNCPQSQCDTNRLLSSQKKLLTRQNT 89
             +S+     L I+ ++ I + +  Y L  K+  +T  C     ++      +KK +T    
Sbjct:    21 ISMTRPGRLIIWLILFISVTYIIYTL--KIVSTTHPCEDLTSESILQQRPEKKAVTVTVK 78

Query:    90 TLYNEPK-TNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEK---PNKTWPA 145
              +  E + T+++H+VFGI  S+  W  R+ Y ++W+KP   RG+VWLDE+    ++T   
Sbjct:    79 AVPAEQEATDLNHVVFGIAASSKLWKQRKEYIKIWYKPKKMRGYVWLDEEVKIKSETGDQ 138

Query:   146 TS-PPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLG-----DVRWFVLGDDDTV 199
              S P  ++S DTS F YT+  G RSAIRI+RI+ ET  + L      +VRWFV+GDDDTV
Sbjct:   139 ESLPSVRISGDTSSFPYTNKQGHRSAIRISRIVSETL-MSLDSESKKNVRWFVMGDDDTV 197

Query:   200 FFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLD 259
             F  +NL+ VL +YDH QMYYIG  SES  Q++I SY MAYGGGGFAISYPLA  L ++ D
Sbjct:   198 FVTDNLIRVLRKYDHEQMYYIGSLSESHLQNIIFSYGMAYGGGGFAISYPLAVALSKMQD 257

Query:   260 GCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHL 319
              CI RY + YGSD ++Q CMAE+GVP+TKE+GFHQ D+ G+ +GLLAAHP++P VS+HHL
Sbjct:   258 QCIQRYPALYGSDDRMQACMAELGVPLTKEIGFHQYDVHGNLFGLLAAHPITPFVSMHHL 317

Query:   320 DYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLE 379
             D V PIFPNM+++ ++KKL    K D    +QQS CYD  ++WT+SVSWG+ VQ++    
Sbjct:   318 DVVEPIFPNMTRVRAIKKLTTPMKIDSAALLQQSICYDKHKSWTISVSWGFAVQVFRGSF 377

Query:   380 TAKRLETAYLTFKSWRSWSD-EPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTT 438
             + + +E    TF +W   +D   + FNT+  S N C++P ++ +    K     + T++ 
Sbjct:   378 SPREMEMPSRTFLNWYKRADYTAYAFNTRPVSRNHCQKPFVFHMSSA-KFDPQLNTTVSE 436

Query:   439 YER 441
             Y R
Sbjct:   437 YTR 439

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2129845 AT4G15240 [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 170/345 (49%), Positives = 223/345 (64%)

Query:    97 TNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDT 156
             T   H++F I  S ++W  R  Y  LW+ P  TR  V+LD    ++   T PP  VS+D 
Sbjct:    78 TRRRHLLFSIAASHDSWLRRSSYVRLWYSPESTRAVVFLDRGGLES-DLTLPPVIVSKDV 136

Query:   157 SRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQ 216
             SRF Y    G RSAIR+AR++KET   G  DVRWFV GDDDTVFF++NLVTVL +YDH +
Sbjct:   137 SRFPYNFPGGLRSAIRVARVVKETVDRGDKDVRWFVFGDDDTVFFVDNLVTVLSKYDHRK 196

Query:   217 MYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQ 276
              +Y+G NSE  +Q+V +S+ MA+GGGGFAIS  LA  L +VLD C+ RY+  YGSD ++ 
Sbjct:   197 WFYVGSNSEFYDQNVRYSFDMAFGGGGFAISASLAKVLAKVLDSCLMRYSHMYGSDSRIF 256

Query:   277 GCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLK 336
              C+AE+GV +T E GFHQID+RG+ +GLL AHPLSP+VSLHHLD V P FP  ++ ES+ 
Sbjct:   257 SCVAELGVTLTHEPGFHQIDVRGNIFGLLCAHPLSPLVSLHHLDAVDPFFPKRNRTESVA 316

Query:   337 KLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRS 396
              L+GA   D  R +QQS CYD     TVSV WGY VQ+Y   +    L T   TF +WR 
Sbjct:   317 HLIGAASFDSGRILQQSVCYDSLNTVTVSVVWGYAVQVYEGNKLLPDLLTLQKTFSTWRR 376

Query:   397 WS--DEPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTY 439
              S     + F+T+ +  +PC RP+++FLD V     G + T + Y
Sbjct:   377 GSGVQSNYMFSTREYPRDPCGRPLVFFLDSVGS--DGTEGTWSNY 419

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2196673 AT1G33250 [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 175/401 (43%), Positives = 255/401 (63%)

Query:    87 QNTTLYNEPKTNVS--HIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWP 144
             +N +L    K ++S  H++FGI GS+  W+ R+    LWWKP   RG VWL+E+ +    
Sbjct:   117 RNRSLSEIDKLDLSMNHLMFGIAGSSQLWERRKELVRLWWKPSQMRGHVWLEEQVSPEEG 176

Query:   145 ATS-PPYKVSQDTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLE 203
               S PP  VS+D+SRF+YT+  G  S +RI+RI  E+FRL L +VRWFVLGDDDT+F + 
Sbjct:   177 DDSLPPIIVSEDSSRFRYTNPTGHPSGLRISRIAMESFRLSLPNVRWFVLGDDDTIFNVH 236

Query:   204 NLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCID 263
             NL+ VL +YD ++M YIG  SES   +   S+ MA+GGGG AISYPLA  L R+ D C+D
Sbjct:   237 NLLAVLSKYDPSEMVYIGNPSESHSANSYFSHNMAFGGGGIAISYPLAEALSRIHDDCLD 296

Query:   264 RYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVL 323
             RY   YGSD ++  C+ E+GVP+++E GFHQ DI+G+ +GLL++HP++P VS+HH++ V 
Sbjct:   297 RYPKLYGSDDRLHACITELGVPLSREPGFHQWDIKGNAHGLLSSHPIAPFVSIHHVEAVN 356

Query:   324 PIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKR 383
             P++P +S ++SLK L  A   DP   +Q+S CYD +   T ++S GY VQ++PS+   + 
Sbjct:   357 PLYPGLSTLDSLKLLTRAMSLDPRSVLQRSICYDHTHKLTFAISLGYVVQVFPSILLPRD 416

Query:   384 LETAYLTFKSWRSWSDEPFTFNTQYFSP--NPCERPIIYFLDRVQKVGKGKDQTLTTYER 441
             LE A L+F +W   S +P  F+     P  + C++PI++FL   ++VG+  + TL TY R
Sbjct:   417 LERAELSFSAWNGIS-QPSEFDLDIKLPISSLCKKPILFFL---KEVGQEGNATLGTYSR 472

Query:   442 --VKSEHDKD--CDNKAYAPALAVKRFQVSASTLDPDHWKL 478
               VK +      C  ++  P   V + QVS   L  + W L
Sbjct:   473 SLVKDDLKTKLLCFPRSL-PLHKVDKIQVSGFPLSKN-WHL 511

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	478
pfam04646	256	pfam04646, DUF604, Protein of unknown function, DU	1e-131
PLN03153	537	PLN03153, PLN03153, hypothetical protein; Provisio	1e-129
pfam02434	248	pfam02434, Fringe, Fringe-like	4e-09

>gnl|CDD|218189 pfam04646, DUF604, Protein of unknown function, DUF604

 Score =  378 bits (974), Expect = e-131
 Identities = 126/251 (50%), Positives = 165/251 (65%), Gaps = 3/251 (1%)

Query: 229 QDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTK 288
           Q++  SY MA+GGGGFAISYPLAA L R+ DGCI+RY + YGSD ++  CMAE+GVP+TK
Sbjct: 1   QNIYFSYGMAFGGGGFAISYPLAAALARMQDGCIERYPALYGSDDRIHACMAELGVPLTK 60

Query: 289 ELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNR 348
           E GFHQ D+RGD  GLLAAHP++P+VSLHHLD V PIFP M+++++L+ LM A K DP R
Sbjct: 61  EPGFHQYDVRGDLLGLLAAHPVAPLVSLHHLDVVDPIFPGMNRLDALRHLMRAAKLDPAR 120

Query: 349 AVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSD-EPFTFNTQ 407
            +QQS CYD    WTVSVSWGYTVQ+Y  + + + LE    TF +W   +D   F FNT+
Sbjct: 121 ILQQSICYDRRYKWTVSVSWGYTVQIYRGILSPRELERPLRTFLNWYRRADYTAFAFNTR 180

Query: 408 YFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVS 467
             + +PC+RP ++FL  V++       T T Y R +   D  C      P   + + +VS
Sbjct: 181 PVTRDPCQRPRVFFLSSVREDRGR-GTTKTEYTRHRVRRDPKCRWPIADPLRKIDQIRVS 239

Query: 468 ASTLDPDHWKL 478
               DPD W  
Sbjct: 240 K-KPDPDLWHR 249

This family includes a conserved region found in several uncharacterized plant proteins. Length = 256

>gnl|CDD|215605 PLN03153, PLN03153, hypothetical protein; Provisional

 Score =  385 bits (989), Expect = e-129
 Identities = 172/388 (44%), Positives = 246/388 (63%), Gaps = 13/388 (3%)

Query: 62  STSNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCE 121
           S  +        NR LS  ++L      +L        +HI+FGI GS+  W  R+    
Sbjct: 92  SLPSSLLLDHFRNRSLSEIERLKVEAELSL--------NHIMFGIAGSSQLWKRRKELVR 143

Query: 122 LWWKPGLTRGFVWLDEK-PNKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIARIIKET 180
           LWW+P   RG VWL+E+   +    + PP  VS+DTSRF+YT+  G  S +RI+RI+ E+
Sbjct: 144 LWWRPNQMRGHVWLEEQVSPEEGDDSLPPIMVSEDTSRFRYTNPTGHPSGLRISRIVLES 203

Query: 181 FRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYG 240
           FRLGL DVRWFVLGDDDT+F  +NLV VL +YD ++M Y+GG SES   +   S+ MA+G
Sbjct: 204 FRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFG 263

Query: 241 GGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGD 300
           GGG AISYPLA  L R+LD C+DRY   YGSD ++  C+ E+GVP+++E GFHQ DIRG+
Sbjct: 264 GGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGN 323

Query: 301 PYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSR 360
            +GLL++HP++P VS+HH++ V P +P +S ++SLK    A K DP   +Q+S CYD + 
Sbjct: 324 AHGLLSSHPIAPFVSIHHVEAVDPFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTH 383

Query: 361 NWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSD-EPFTFNTQYFSPNPCERPII 419
           + T S+S GY VQ++PS+   + LE + LT+ +W   S    F  +T+    + C++PI+
Sbjct: 384 HLTFSISLGYVVQVFPSIVLPRDLERSELTYSAWNKISHRNEFDLDTRDPIKSVCKKPIL 443

Query: 420 YFLDRVQKVGKGKDQTLTTYERVKSEHD 447
           +FL  V + G   + TL TY R + + D
Sbjct: 444 FFLKDVGREG---NATLGTYSRARMKDD 468

Length = 537

>gnl|CDD|190308 pfam02434, Fringe, Fringe-like

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 22/125 (17%)

Query: 187 DVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIG--------GNSESVEQDVIHSYTMA 238
             +WF   DDD    +  LV +L  Y+H Q  Y+G          +E V+ +    +  A
Sbjct: 84  GKKWFCHVDDDNYVNVPRLVRLLSCYNHTQDVYLGKPSLYRPIEATERVKNNRKVGFWFA 143

Query: 239 YGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQG---CM------AEIGVPVTKE 289
            GG GF IS  LA ++     G       F  + +K++    C         +GVP+T  
Sbjct: 144 TGGAGFCISRGLALKMSPWASGG-----RFMSTSEKIRLPDDCTLGYIIENLLGVPLTHS 198

Query: 290 LGFHQ 294
             FH 
Sbjct: 199 PLFHS 203

The drosophila protein fringe (FNG) is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands. FNG is localised to the Golgi apparatus (not secreted as previously thought). Modification of Notch occurs through glycosylation by FNG. The xenopus homologue, lunatic fringe, has been implicated in a variety of functions. Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	478
PLN03153	537	hypothetical protein; Provisional	100.0
PF04646	255	DUF604: Protein of unknown function, DUF604; Inter	100.0
KOG2246	364	consensus Galactosyltransferases [Carbohydrate tra	100.0
PF02434	252	Fringe: Fringe-like; InterPro: IPR003378 The Notch	100.0
KOG3708	681	consensus Uncharacterized conserved protein [Funct	99.32
KOG2287	349	consensus Galactosyltransferases [Carbohydrate tra	99.06
PLN03193	408	beta-1,3-galactosyltransferase; Provisional	99.06
PF01762	195	Galactosyl_T: Galactosyltransferase; InterPro: IPR	98.97
PLN03133	636	beta-1,3-galactosyltransferase; Provisional	98.85
PTZ00210	382	UDP-GlcNAc-dependent glycosyltransferase; Provisio	98.5
KOG2288	274	consensus Galactosyltransferases [Carbohydrate tra	97.94
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	93.57
PF13506	175	Glyco_transf_21: Glycosyl transferase family 21	92.23
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	92.18
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	91.52
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	89.66
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	88.98
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	85.6
PF01755	200	Glyco_transf_25: Glycosyltransferase family 25 (LP	85.32
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	84.65
PF13632	193	Glyco_trans_2_3: Glycosyl transferase family group	84.37
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	83.13
cd06436	191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	82.76
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	82.68
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	82.43
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	81.94
cd06532	128	Glyco_transf_25 Glycosyltransferase family 25 [lip	81.61
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	80.74
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	80.26

>PLN03153 hypothetical protein; Provisional

Probab=100.00  E-value=6.2e-99  Score=788.67  Aligned_cols=447  Identities=40%  Similarity=0.733  Sum_probs=387.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc------CcccCCCCCC--CCC----Cccc------cccccccccccc
Q 044015           26 KPMDIVSLFMKSALFIFTVISIYLLFFYALSNK------LHYSTSNCPQ--SQC----DTNR------LLSSQKKLLTRQ   87 (478)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~----~~~~------~~~~~~~~~~~~   87 (478)
                      -.+-++++|+..+++|+||++...+++...+..      +.--.+.|+.  ..+    .+..      +++..... +-.
T Consensus        30 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  108 (537)
T PLN03153         30 AVVAVAALLLSTTAWLSLVFSGTTARCWHRFKDWEGSPDTLLWNKRYHHPIVTPLPPPPSSPSLPSSLLLDHFRNR-SLS  108 (537)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccccccCccccCccccccccccccccccccccccccccc-ccC
Confidence            377788888888888888888888877632221      0000223411  111    0001      11111110 000


Q ss_pred             -cccCCCCCCCCCCeEEEEEecCccchHhHHHHHHHhccCCCcceEEEeecCCCC-CCCCCCCCeeeCCCCCcccccccc
Q 044015           88 -NTTLYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNK-TWPATSPPYKVSQDTSRFQYTSWY  165 (478)
Q Consensus        88 -~~~~~~~~~~~~s~IvFgI~Ts~k~~~~R~~~ik~Ww~~~~~r~~vfld~~~~~-~~~~~lP~v~is~~~s~~~yt~~~  165 (478)
                       ........+++++||+|||+|++++|++|++||+.||+++.|||+||+|+.+.+ .++..+|+++|+.++++|+|+++.
T Consensus       109 ~~~~~~~~~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~~~~~~~~P~i~is~d~s~f~y~~~~  188 (537)
T PLN03153        109 EIERLKVEAELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSPEEGDDSLPPIMVSEDTSRFRYTNPT  188 (537)
T ss_pred             CCCCcccCCCCccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCCCCCcCCCCCEEeCCCcccccccCCC
Confidence             011234467999999999999999999999999999999999999999998744 477899999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccce
Q 044015          166 GTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFA  245 (478)
Q Consensus       166 g~~s~~Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~v  245 (478)
                      |+++++||++|+.|+++.+.|++||||++||||||+++||+++|++|||++++|||.++|...++..+++.||+|||||+
T Consensus       189 Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~  268 (537)
T PLN03153        189 GHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIA  268 (537)
T ss_pred             CcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEE
Confidence            99999999999999999889999999999999999999999999999999999999999999888888888999999999


Q ss_pred             ecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCcCcCcCCCCcCcccCCCCCCccccccCCCCCCC
Q 044015          246 ISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPI  325 (478)
Q Consensus       246 LSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfhQ~D~~gd~~G~~~~~~~~P~lSlHH~~~~~~~  325 (478)
                      ||++||++|.+.+++|.++|+..++||.+|++||+++||+||+++||||+|++||++|++++|+..|+||||||+.++|+
T Consensus       269 LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~p~~P~vSlHH~~~~~p~  348 (537)
T PLN03153        269 ISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSSHPIAPFVSIHHVEAVDPF  348 (537)
T ss_pred             EcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhcCCCCCceeeeeccccccc
Confidence            99999999999999999888877899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccHHHHHHHHHHHhhcCCCCceeeeeeeccCCceEEEEEeeeEEEEeCCCcchhhHHHHHhhhhcccCCCC-CCccc
Q 044015          326 FPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWRSWSD-EPFTF  404 (478)
Q Consensus       326 fp~~~~~~~l~~l~~a~~~~~~~~~qr~~~~D~~~~w~~~~s~GySi~~y~~~~~~~dl~~~e~Tf~~w~~~~~-~~~~f  404 (478)
                      ||+|++.++|+++.+|+++|++++|||+||||..++|+|+|||||||++|++++.+.||+++|+||.+|++..+ .+|+|
T Consensus       349 fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fsvSwGysV~~y~~~~~~~dl~~~e~Tf~~w~~~~~~~~f~f  428 (537)
T PLN03153        349 YPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFSISLGYVVQVFPSIVLPRDLERSELTYSAWNKISHRNEFDL  428 (537)
T ss_pred             cCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEEEeccEEEEEecCCCCchhhhhhHhhhhhhcccCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987766 68999


Q ss_pred             cCCCCCCCCCCCCeEEEEeeeeeeecCCCcEEEEEEeeccCCC----CCCCCcCCCCCCCccEEEEEecCCCCCCCCC
Q 044015          405 NTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHD----KDCDNKAYAPALAVKRFQVSASTLDPDHWKL  478 (478)
Q Consensus       405 ~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~Y~r~~~~~~----~~c~~~~~~~~~~~~~i~v~~~~~~~~~w~~  478 (478)
                      ||||+.+++|++|.+|||++++.   ++++|+|+|+|+..++.    +.|.+. .+++..|++|+|++ +++|+.|++
T Consensus       429 ntr~~~r~~c~~p~~f~l~~~~~---~~~~~~~~Y~r~~~~~~~~~~~~C~~~-~~~~~~v~~i~V~~-~~~~~~w~~  501 (537)
T PLN03153        429 DTRDPIKSVCKKPILFFLKDVGR---EGNATLGTYSRARMKDDLKRKVFCFPR-SLPLPYVEKIQVLG-FPLSKNWHL  501 (537)
T ss_pred             cCCCCCCCcccCceEEEeeeccc---cCCeeEEEEEEeccccccccccccccc-CCChhhceEEEEec-CCCccchhh
Confidence            99999999999999999999975   57899999999965432    567765 46888999999999 888999974

>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins

Probab=100.00  E-value=1.9e-70  Score=531.08  Aligned_cols=247  Identities=53%  Similarity=0.991  Sum_probs=238.1

Q ss_pred             ccccccccccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCcCcCcCCCCcCcccCC
Q 044015          229 QDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAH  308 (478)
Q Consensus       229 ~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfhQ~D~~gd~~G~~~~~  308 (478)
                      ||+.|+|+||||||||+||+||+++|++++|+|+++|+..+|||.+|..||+++||+||.++||||+|++||++|++++|
T Consensus         1 Qn~~fs~~MAfGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di~Gd~~G~~~a~   80 (255)
T PF04646_consen    1 QNVMFSYNMAFGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDIRGDPSGFLEAH   80 (255)
T ss_pred             CCceeeccccccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEeeccCcceeeecC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCCCCCCCCCCccHHHHHHHHHHHhhcCCCCceeeeeeeccCCceEEEEEeeeEEEEeCCCcchhhHHHHH
Q 044015          309 PLSPIVSLHHLDYVLPIFPNMSQIESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAY  388 (478)
Q Consensus       309 ~~~P~lSlHH~~~~~~~fp~~~~~~~l~~l~~a~~~~~~~~~qr~~~~D~~~~w~~~~s~GySi~~y~~~~~~~dl~~~e  388 (478)
                      +..|++|||||+.++|+||+|++.+||++|++|+++|+++++||+||||+.++|+|+||||||||+|++.++++||++++
T Consensus        81 ~~~pl~SlHH~~~~~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~~~l~~~dLe~~~  160 (255)
T PF04646_consen   81 PLAPLVSLHHWDSVDPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYRGILTPRDLETPE  160 (255)
T ss_pred             CCCceeeeeehhhccccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEECCCCChHHHhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCC-CCccccCCCCCCCCCCCCeEEEEeeeeeeecCCCcEEEEEEeeccCCCCCCCCcCCCCCCCccEEEEE
Q 044015          389 LTFKSWRSWSD-EPFTFNTQYFSPNPCERPIIYFLDRVQKVGKGKDQTLTTYERVKSEHDKDCDNKAYAPALAVKRFQVS  467 (478)
Q Consensus       389 ~Tf~~w~~~~~-~~~~f~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~Y~r~~~~~~~~c~~~~~~~~~~~~~i~v~  467 (478)
                      +||.+|+++++ ++|+|||||+++++|++|.+|||+++..+ .++|+++++|+|...++ ++|.|++.+|+.+|++|+|+
T Consensus       161 rTF~~W~~~~~~~~f~FnTRp~~~dpC~rP~vffL~~v~~~-~~~~~t~s~Y~r~~~~~-~~C~~~~~~p~~~v~~I~V~  238 (255)
T PF04646_consen  161 RTFRTWYRRSDRTPFAFNTRPVPRDPCQRPTVFFLSSVRSD-SGSNQTVSSYVRHRVRN-PNCCWPMADPLSKVQRIRVL  238 (255)
T ss_pred             HHhhcccCcCcCCceeccCCCCcCCCCCCCeEEEEeeeeec-CCCCeEEEEEEecccCC-CCCCCCCCCchhhceEEEEE
Confidence            99999999887 89999999999999999999999999984 36789999999998665 99999998899999999999


Q ss_pred             ecCCCCCCCCC
Q 044015          468 ASTLDPDHWKL  478 (478)
Q Consensus       468 ~~~~~~~~w~~  478 (478)
                      + +++|+.|++
T Consensus       239 ~-k~~~~~w~~  248 (255)
T PF04646_consen  239 K-KPDPDLWKK  248 (255)
T ss_pred             c-ccCCccccc
Confidence            9 999999985

>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.4e-44  Score=370.14  Aligned_cols=349  Identities=35%  Similarity=0.465  Sum_probs=268.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccCc--ccCCCCCCCCCCccccccccccccccccccCCCCCCCCCCeE
Q 044015           25 IKPMDIVSLFMKSALFIFTVISIYLLFFYALSNKLH--YSTSNCPQSQCDTNRLLSSQKKLLTRQNTTLYNEPKTNVSHI  102 (478)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I  102 (478)
                      .+++...++...++++++++..+.+.+|....-...  ..++  ..-+.......+.+.    .. ........+++.|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~-~~~~~~~~~~i~~~   74 (364)
T KOG2246|consen    2 NLPSRFLSLDSSFLLLSFLIASFGMISYILFSYPLKSFISSL--FLLPHELHLLFPASI----HL-HSENLSLTTDILHL   74 (364)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHhhhheeEecccccccchhh--ccccccccccccccc----cc-cccccccccchhhh
Confidence            456667777777777777777777555554422211  0000  000000000000000    00 01233456788888


Q ss_pred             EEE-EecCccchHhHHHHHHHhccCCCcceEEEeecCCCCCC------CCCCCCeeeCCCCCccc---cccccCcchHHH
Q 044015          103 VFG-IGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTW------PATSPPYKVSQDTSRFQ---YTSWYGTRSAIR  172 (478)
Q Consensus       103 vFg-I~Ts~k~~~~R~~~ik~Ww~~~~~r~~vfld~~~~~~~------~~~lP~v~is~~~s~~~---yt~~~g~~s~~R  172 (478)
                      +|| ++++...|..|..+|.-||.++.+++.++++... ++|      ..-+|++ ++.++++++   |+.+.|.+..+|
T Consensus        75 ~~g~~~~s~~~~l~r~~~v~cwv~t~~~~~~~~~~~v~-~TW~~rc~~~~f~s~~-~s~~~~~f~~v~~~~~~g~~~~~~  152 (364)
T KOG2246|consen   75 VFGIIASSIALWLSRSGRVLCWVLTSPMRHVTRADAVK-ETWLKRCDKGIFFSPT-LSKDDSRFPTVYYNLPDGYRSLWR  152 (364)
T ss_pred             ccCCccccchhccCCCceEEEEEEecCcCceeehhhhh-cccccccCcceecCcc-CCCCCCcCceeeccCCcchHHHHH
Confidence            888 8888888888888888888777788888887653 222      1235666 777777887   888889999999


Q ss_pred             HHHHHHHHH-HhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHH
Q 044015          173 IARIIKETF-RLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLA  251 (478)
Q Consensus       173 i~~ml~e~~-~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll  251 (478)
                      +.+++-+.+ ++..+++|||+++||||||+++||+++|++|||++|+|||..++.+.++. +++.+|.||.|++.+++++
T Consensus       153 ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~~~~-y~~g~ag~~ls~aa~~~la  231 (364)
T KOG2246|consen  153 KTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYFQNG-YSSGGAGYVLSFAALRRLA  231 (364)
T ss_pred             HHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccccccc-cccCCCCcceeHHHHHHHH
Confidence            988766655 47889999999999999999999999999999999999999999988775 4444555555555555555


Q ss_pred             HHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCcCcCcCCCCcCcccCCCCCCccccccCCCCCCCCCCccH
Q 044015          252 AELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLDYVLPIFPNMSQ  331 (478)
Q Consensus       252 ~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfhQ~D~~gd~~G~~~~~~~~P~lSlHH~~~~~~~fp~~~~  331 (478)
                      +++.+..+.|++++.+ +++|.+||+||+++||+++.+   ||.|.+|...|+..+++..|.+++||+.-+  +||++++
T Consensus       232 ~~l~~~~~~C~~~~~~-~~eD~~i~~Cl~~~GV~~~d~---~d~dg~~rf~~~~p~~~~~p~~s~~~~~~~--~fp~~~~  305 (364)
T KOG2246|consen  232 ERLLNNEDKCPQRYPS-YGEDRRIGRCLAEVGVPATDE---RDEDGRGRFLPLLPAHPIAPLVSLHHLWLV--YFPNQNG  305 (364)
T ss_pred             HHHhcchhhcccccCC-chhHHHHHHHHHHhCCCccCc---hhhhcccccCCCChhhccCCccccccceee--ecCCCch
Confidence            6666667889988776 789999999999999999998   999999999999999999999999999998  9999999


Q ss_pred             HHHHHHHHHHhhcCCCCceeeeeeeccCCceEEEEEeeeEEEEeCCCcchhhHHHHHhhhhccc
Q 044015          332 IESLKKLMGAYKTDPNRAVQQSFCYDLSRNWTVSVSWGYTVQLYPSLETAKRLETAYLTFKSWR  395 (478)
Q Consensus       332 ~~~l~~l~~a~~~~~~~~~qr~~~~D~~~~w~~~~s~GySi~~y~~~~~~~dl~~~e~Tf~~w~  395 (478)
                      ..++.+++.+...++. .+|+.+|||..+.|+++++|||.+++++....     ++.+||.+|+
T Consensus       306 ~~~~s~~~vsfh~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~  363 (364)
T KOG2246|consen  306 SGCCSDLAVSFHYLSP-IEMQSFCYDIYRLRTFGVSWGYTVQIIRPNLS-----RPSRTFSSWN  363 (364)
T ss_pred             hhHHHHhhHhhccCCH-HHHHHHhhhhhheeeccccccccccccccccc-----ccccccCCCC
Confidence            9999999999999999 99999999999999999999999999998777     7889999985

>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []

Probab=100.00  E-value=2.6e-33  Score=277.21  Aligned_cols=211  Identities=21%  Similarity=0.323  Sum_probs=118.1

Q ss_pred             CCCCCeEEEEEecCccchHhHHHHHHHhccCCC-cceEEEeecCCCCCCCCCCCCe----eeCCCCCccccccccCcchH
Q 044015           96 KTNVSHIVFGIGGSANTWDDRRHYCELWWKPGL-TRGFVWLDEKPNKTWPATSPPY----KVSQDTSRFQYTSWYGTRSA  170 (478)
Q Consensus        96 ~~~~s~IvFgI~Ts~k~~~~R~~~ik~Ww~~~~-~r~~vfld~~~~~~~~~~lP~v----~is~~~s~~~yt~~~g~~s~  170 (478)
                      ++++++|+|+|+|+.++|++|+++|+.||.+.. ...++|.|.++     ..+|.+    .+.++++. .++.  .   .
T Consensus         2 ~~~~~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d-----~~l~~~~~~~l~~~~~~~-~~~~--~---~   70 (252)
T PF02434_consen    2 PVTLDDIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAED-----PSLPTVTGVHLVNPNCDA-GHCR--K---T   70 (252)
T ss_dssp             ---GGGEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS-------HHHHHHHGGGEEE-----------------
T ss_pred             CcccccEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCccc-----cccccccccccccCCCcc-hhhH--H---H
Confidence            588999999999999999999999988886543 33455777653     233433    12222221 1121  1   1


Q ss_pred             HHHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccc----------ccccccccc
Q 044015          171 IRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDV----------IHSYTMAYG  240 (478)
Q Consensus       171 ~Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~----------~~g~~fa~G  240 (478)
                      ..+. |..+......+++|||+++|||||++++||+++|++|||++|+|||.++.......          ..++.||+|
T Consensus        71 ~~~~-~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~~~f~~G  149 (252)
T PF02434_consen   71 LSCK-MAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSKDSGFWFATG  149 (252)
T ss_dssp             --HH-HHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------EE-G
T ss_pred             HHHH-HHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccCcCceEeeCC
Confidence            1122 21111111246889999999999999999999999999999999999986542211          235679999


Q ss_pred             CccceecHHHHHHHHHhhhhh--hccccc-CCCchHHHHHHHHh-cCCceeecCCCcCcCcC--CCCcCcccCCCCCCcc
Q 044015          241 GGGFAISYPLAAELVRVLDGC--IDRYAS-FYGSDQKVQGCMAE-IGVPVTKELGFHQIDIR--GDPYGLLAAHPLSPIV  314 (478)
Q Consensus       241 GaG~vLSr~Ll~~L~~~~~~C--~~~~~~-~~~gD~~L~~Ci~~-lGV~LT~~~gfhQ~D~~--gd~~G~~~~~~~~P~l  314 (478)
                      ||||||||+||++|.++...|  ...... ..++|+.||.||+. +||++|+.+.|||.-..  ......+..   +..|
T Consensus       150 GaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~l~~~~~~~l~~---q~~~  226 (252)
T PF02434_consen  150 GAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLENLQDYNPETLHR---QVPI  226 (252)
T ss_dssp             GG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-GGG--TTTGGG----SEE
T ss_pred             CeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcccccCCHHHhcc---CCCe
Confidence            999999999999999877655  332221 25689999999998 99999999999996443  333344444   3459


Q ss_pred             ccccCCC
Q 044015          315 SLHHLDY  321 (478)
Q Consensus       315 SlHH~~~  321 (478)
                      |+|+...
T Consensus       227 s~~~~~~  233 (252)
T PF02434_consen  227 SYHKFEN  233 (252)
T ss_dssp             E-EEETT
T ss_pred             ecCCCcC
Confidence            9999964

It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.

>KOG3708 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=3.2e-12  Score=134.14  Aligned_cols=170  Identities=16%  Similarity=0.196  Sum_probs=123.5

Q ss_pred             CCCCCeEEEEEecCccchHhHHHHHHHhccCCCcceEEEeecCCCCCCCCCCCCeeeCCCCCccccccccCcchHHHHHH
Q 044015           96 KTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTSRFQYTSWYGTRSAIRIAR  175 (478)
Q Consensus        96 ~~~~s~IvFgI~Ts~k~~~~R~~~ik~Ww~~~~~r~~vfld~~~~~~~~~~lP~v~is~~~s~~~yt~~~g~~s~~Ri~~  175 (478)
                      .-+...++.||+|..    +-.-+|..+-+.-..+..+|.++..-   +.++....+   .|   .+..+|++   +...
T Consensus        22 LG~RErl~~aVmte~----tlA~a~NrT~ahhvprv~~F~~~~~i---~~~~a~~~~---vs---~~d~r~~~---~~s~   85 (681)
T KOG3708|consen   22 LGTRERLMAAVMTES----TLALAINRTLAHHVPRVHLFADSSRI---DNDLAQLTN---VS---PYDLRGQK---THSM   85 (681)
T ss_pred             hhhHHHHHHHHHHHH----HHHHHHHHHHHhhcceeEEeeccccc---cccHhhccc---cC---ccccCccc---cHHH
Confidence            345677888999822    44456777765555778888887632   222222222   11   11223443   3566


Q ss_pred             HHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHHHHHH
Q 044015          176 IIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELV  255 (478)
Q Consensus       176 ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L~  255 (478)
                      .+..++++...++|||+++-|+||++...|++++.+.+.++++|+|...++..       .=|.+|+|+.||++++++|.
T Consensus        86 vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~gs-------~rC~l~~G~LLS~s~l~~lr  158 (681)
T KOG3708|consen   86 VLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDGS-------GRCRLDTGMLLSQSLLHALR  158 (681)
T ss_pred             HHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhCcc-------CccccccceeecHHHHHHHH
Confidence            77888888889999999999999999999999999999999999996555332       23899999999999999999


Q ss_pred             HhhhhhhcccccCCCchHHHHHHHHh-cCCceeec
Q 044015          256 RVLDGCIDRYASFYGSDQKVQGCMAE-IGVPVTKE  289 (478)
Q Consensus       256 ~~~~~C~~~~~~~~~gD~~L~~Ci~~-lGV~LT~~  289 (478)
                      ++.+.|....-+ --.|..||+||.. +||.|+..
T Consensus       159 nnle~C~~~~ls-ad~d~~lgrCi~~At~v~C~~~  192 (681)
T KOG3708|consen  159 NNLEGCRNDILS-ADPDEWLGRCIQDATGVGCKPL  192 (681)
T ss_pred             hhHHHhhccccc-CCcHHHHHHHHHHhhcCCccch
Confidence            999999653211 1258899999985 78888753

>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]

Probab=99.06  E-value=5.4e-09  Score=108.57  Aligned_cols=141  Identities=22%  Similarity=0.306  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccC-CCCCCeEEeeccCCCCcc----ccc----------cc
Q 044015          171 IRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRY-DHNQMYYIGGNSESVEQD----VIH----------SY  235 (478)
Q Consensus       171 ~Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~y-D~~ep~YIG~~se~~~~~----~~~----------g~  235 (478)
                      ++.+.++...-. ++|+++.++.+|||+||++++|++.|.+. ++++..|+|.......+.    ..+          .|
T Consensus       172 lKtl~~l~w~~~-~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~~~~Y  250 (349)
T KOG2287|consen  172 LKTLAILLWGVS-KCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEYPCSVY  250 (349)
T ss_pred             HHHHHHHHHHHh-cCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHCCCCCC
Confidence            445556665554 58999999999999999999999999999 999999999876542110    000          24


Q ss_pred             cccccCccceecHHHHHHHHHhhhhhhcccccCC-CchHHHHHHHHhc-CCceeecCCCcCcCcCCCCcCcccCCCCCCc
Q 044015          236 TMAYGGGGFAISYPLAAELVRVLDGCIDRYASFY-GSDQKVQGCMAEI-GVPVTKELGFHQIDIRGDPYGLLAAHPLSPI  313 (478)
Q Consensus       236 ~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~-~gD~~L~~Ci~~l-GV~LT~~~gfhQ~D~~gd~~G~~~~~~~~P~  313 (478)
                      +-..+|+||+||+.++++|.+....     ...+ -+|+.+|.||++. |+.....+++......     +..+. .+-+
T Consensus       251 P~Y~sG~gYvis~~~a~~l~~~s~~-----~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~~-----~~~~~-~~~~  319 (349)
T KOG2287|consen  251 PPYASGPGYVISGDAARRLLKASKH-----LKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPLS-----FDPCC-YRDL  319 (349)
T ss_pred             CCcCCCceeEecHHHHHHHHHHhcC-----CCccchHHHHHHHHHHHhcCCCcccCccccccccc-----CCCCc-ccce
Confidence            4446899999999999999984211     1223 3899999999975 8887776663332111     11111 2567


Q ss_pred             cccccCCCCC
Q 044015          314 VSLHHLDYVL  323 (478)
Q Consensus       314 lSlHH~~~~~  323 (478)
                      ++.|..++.+
T Consensus       320 ~~~H~~~p~e  329 (349)
T KOG2287|consen  320 LAVHRLSPNE  329 (349)
T ss_pred             EEEecCCHHH
Confidence            8889888643

>PLN03193 beta-1,3-galactosyltransferase; Provisional

Probab=99.06  E-value=2e-09  Score=112.54  Aligned_cols=116  Identities=18%  Similarity=0.168  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCc---c------cc-------cccc
Q 044015          173 IARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQ---D------VI-------HSYT  236 (478)
Q Consensus       173 i~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~---~------~~-------~g~~  236 (478)
                      .+.+++.+++  ..++++|+++|||+|+++++|..+|++......+|+|........   .      ..       ..|+
T Consensus       224 Tl~~f~wA~~--~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YP  301 (408)
T PLN03193        224 TKTYFATAVA--MWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYF  301 (408)
T ss_pred             HHHHHHHHHH--cCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCC
Confidence            4556666665  468999999999999999999999988776667999997432110   0      00       1133


Q ss_pred             ccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCcC
Q 044015          237 MAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFHQ  294 (478)
Q Consensus       237 fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfhQ  294 (478)
                      ....|+||+||+.+++.|...... +..|   -.+|+.+|.||..++|.-.+.+.|+-
T Consensus       302 pyAsG~gYVlS~DLa~~I~~n~~~-L~~y---~~EDV~vG~Wl~~L~V~~vdd~~fcc  355 (408)
T PLN03193        302 RHATGQLYAISKDLASYISINQHV-LHKY---ANEDVSLGSWFIGLDVEHIDDRRLCC  355 (408)
T ss_pred             CCCCcceEEehHHHHHHHHhChhh-hccc---CcchhhhhhHhccCCceeeecccccC
Confidence            335789999999999999865432 2222   24899999999888888888888875

>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=98.97  E-value=6.2e-09  Score=98.86  Aligned_cols=114  Identities=16%  Similarity=0.207  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccC--CCCCCeEEeeccCCCCc----cccc----------c
Q 044015          171 IRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRY--DHNQMYYIGGNSESVEQ----DVIH----------S  234 (478)
Q Consensus       171 ~Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~y--D~~ep~YIG~~se~~~~----~~~~----------g  234 (478)
                      .+.+.+++.+.+ ++++.++++++|||+|+++++|...|...  ++.+..+.|........    ...+          .
T Consensus        65 ~K~~~~~~w~~~-~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~  143 (195)
T PF01762_consen   65 LKTLAGLKWASK-HCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDY  143 (195)
T ss_pred             HHHHHHHHHHHh-hCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeeccccc
Confidence            456777877776 58999999999999999999999999887  77778887877543211    0110          1


Q ss_pred             c-cccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015          235 Y-TMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL  290 (478)
Q Consensus       235 ~-~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~  290 (478)
                      | +|| .|+|++||+.+++.|......    .+...-+|+.+|.|+..+||+.++.|
T Consensus       144 yP~y~-~G~~yvls~~~v~~i~~~~~~----~~~~~~eDv~iGi~~~~~~i~~~~~~  195 (195)
T PF01762_consen  144 YPPYC-SGGGYVLSSDVVKRIYKASSH----TPFFPLEDVFIGILAEKLGIKPIHDP  195 (195)
T ss_pred             CCCcC-CCCeEEecHHHHHHHHHHhhc----CCCCCchHHHHHHHHHHCCCCccCCC
Confidence            2 355 578999999999999985321    22334589999999999999887643

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane

>PLN03133 beta-1,3-galactosyltransferase; Provisional

Probab=98.85  E-value=6.1e-08  Score=106.81  Aligned_cols=103  Identities=18%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             hCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCc----ccc----------ccccccccCccceecH
Q 044015          183 LGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQ----DVI----------HSYTMAYGGGGFAISY  248 (478)
Q Consensus       183 ~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~----~~~----------~g~~fa~GGaG~vLSr  248 (478)
                      ..++++++++++|||+|+++++|+++|.+.+..+.+|+|.......+    ...          ..|+-..+|+||+||+
T Consensus       471 ~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~  550 (636)
T PLN03133        471 TEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSR  550 (636)
T ss_pred             HhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcH
Confidence            35789999999999999999999999998888888999987543211    001          1244345789999999


Q ss_pred             HHHHHHHHhhhhhhcccccCCCchHHHHHHHHh---cCCcee
Q 044015          249 PLAAELVRVLDGCIDRYASFYGSDQKVQGCMAE---IGVPVT  287 (478)
Q Consensus       249 ~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~---lGV~LT  287 (478)
                      .+++.|........-  +...-+|+.+|.|+++   +|++..
T Consensus       551 Dla~~L~~~s~s~~l--~~f~lEDVyvGi~l~~l~k~gl~v~  590 (636)
T PLN03133        551 DIAKEVYKRHKEGRL--KMFKLEDVAMGIWIAEMKKEGLEVK  590 (636)
T ss_pred             HHHHHHHHhhhhccc--CcCChhhHhHHHHHHHhcccCCCce
Confidence            999999875432211  1122489999999974   455544

>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional

Probab=98.50  E-value=8.8e-07  Score=91.84  Aligned_cols=146  Identities=15%  Similarity=0.092  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHH
Q 044015          172 RIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLA  251 (478)
Q Consensus       172 Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll  251 (478)
                      +....++.+++ .+|++++++.+|||+|+.+++++..| +..|.+.+|+|.......+.....-+| .+|.||+||+.++
T Consensus       185 KT~l~~~wA~~-~cP~a~YImKgDDDvFVrVp~lL~~L-r~~prr~LY~G~v~~~~~p~Rd~~PpY-~~G~gYvLSrDVA  261 (382)
T PTZ00210        185 KTYLWLRFALH-MFPNVSYIVKGDDDIFIRVPKYLADL-RVMPRHGLYMGRYNYYNRIWRRNQLTY-VNGYCITLSRDTA  261 (382)
T ss_pred             HHHHHHHHHHH-hCCCCCeEEEcCCCeEeeHHHHHHHH-hhCCCCceEEEeeCCCCccccCCCCCc-cccceeeccHHHH
Confidence            34445666666 58999999999999999999999999 445778899998865432211111234 4788999999999


Q ss_pred             HHHHHhhhhh-h----------cccc--cCCCchHHHHHHHHh-cC-Cce-eecCCCc-CcCcCCCCcCcccCCCCCCcc
Q 044015          252 AELVRVLDGC-I----------DRYA--SFYGSDQKVQGCMAE-IG-VPV-TKELGFH-QIDIRGDPYGLLAAHPLSPIV  314 (478)
Q Consensus       252 ~~L~~~~~~C-~----------~~~~--~~~~gD~~L~~Ci~~-lG-V~L-T~~~gfh-Q~D~~gd~~G~~~~~~~~P~l  314 (478)
                      +.|....... +          +.|.  ....+|.++|.-|.. ++ -++ +...+++ -.|.+... +.-+-  ..-.|
T Consensus       262 ~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k~~~l~~V~~~~c~Fhd~~~~~-~~~~v--~~~sV  338 (382)
T PTZ00210        262 QAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILREKVVYRNLISVEMGRCHFHNAGKFG-VRKSV--RNMSV  338 (382)
T ss_pred             HHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHHhcCcCceeeeccccccceecCCCC-Ccccc--ccceE
Confidence            9999752211 1          1111  113589999999964 32 222 3333332 22443211 11111  12448


Q ss_pred             ccccCCCCC
Q 044015          315 SLHHLDYVL  323 (478)
Q Consensus       315 SlHH~~~~~  323 (478)
                      -+||++..+
T Consensus       339 vvHhike~d  347 (382)
T PTZ00210        339 VIHHIQEAD  347 (382)
T ss_pred             EEEecCHHH
Confidence            899998843

>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]

Probab=97.94  E-value=3.3e-05  Score=76.30  Aligned_cols=114  Identities=23%  Similarity=0.275  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCC-C-c-ccc-------cc-----ccc
Q 044015          173 IARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESV-E-Q-DVI-------HS-----YTM  237 (478)
Q Consensus       173 i~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~-~-~-~~~-------~g-----~~f  237 (478)
                      ....+..++.+  -+.++|+.+|||+|++++.|...|+++-....+|||...... . + ...       +|     +.+
T Consensus        96 t~~~f~~A~~~--~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~EpeWkfg~~g~Yfrh  173 (274)
T KOG2288|consen   96 TKAFFSAAVAH--WDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPEWKFGDNGNYFRH  173 (274)
T ss_pred             HHHHHHHHHHh--ccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChhhhcCcccccchh
Confidence            34455566653  478999999999999999999999999887889999974321 0 0 111       11     234


Q ss_pred             cccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecCCCc
Q 044015          238 AYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKELGFH  293 (478)
Q Consensus       238 a~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~gfh  293 (478)
                      |+ |+||+||+.|+.-|+-+.+- +..|.   .+|+-||.-+.-+.|.=.+.+.++
T Consensus       174 A~-G~~YvlS~dLa~yi~in~~l-L~~y~---nEDVSlGaW~~gldV~h~dd~rlC  224 (274)
T KOG2288|consen  174 AT-GGGYVLSKDLATYISINRQL-LHKYA---NEDVSLGAWMIGLDVEHVDDPRLC  224 (274)
T ss_pred             cc-CceEEeeHHHHHHHHHhHHH-HHhhc---cCCcccceeeeeeeeeEecCCccc
Confidence            54 57899999999998876433 22232   379999977644434333334443

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=93.57  E-value=0.3  Score=43.01  Aligned_cols=84  Identities=15%  Similarity=0.099  Sum_probs=58.4

Q ss_pred             CccEEEEEcCcceechhHHHHHhccCCCCC-CeEEeeccCCCCccccccccccccCccceecHHHHHHHHHhhhhhhccc
Q 044015          187 DVRWFVLGDDDTVFFLENLVTVLGRYDHNQ-MYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRY  265 (478)
Q Consensus       187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~e-p~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~  265 (478)
                      +.+|++++|||..+..+.|.+++..+.... -..+|..               ..|+++++++.+++++...-+..    
T Consensus        74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~----  134 (166)
T cd04186          74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------VSGAFLLVRREVFEEVGGFDEDF----  134 (166)
T ss_pred             CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------CceeeEeeeHHHHHHcCCCChhh----
Confidence            689999999999999888888887554332 2233333               57889999999998865321111    


Q ss_pred             ccCCCchHHHHHHHHhcCCceeecC
Q 044015          266 ASFYGSDQKVQGCMAEIGVPVTKEL  290 (478)
Q Consensus       266 ~~~~~gD~~L~~Ci~~lGV~LT~~~  290 (478)
                       ..+++|..+...+.+.|.++...+
T Consensus       135 -~~~~eD~~~~~~~~~~g~~i~~~~  158 (166)
T cd04186         135 -FLYYEDVDLCLRARLAGYRVLYVP  158 (166)
T ss_pred             -hccccHHHHHHHHHHcCCeEEEcc
Confidence             115679988888877776665443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PF13506 Glyco_transf_21: Glycosyl transferase family 21

Probab=92.23  E-value=0.78  Score=43.08  Aligned_cols=99  Identities=14%  Similarity=0.151  Sum_probs=63.3

Q ss_pred             CCccEEEEEcCcceechhHHHHHhccCC-CCCC----eEEeeccCCCCc-------ccc-------ccccccccCcccee
Q 044015          186 GDVRWFVLGDDDTVFFLENLVTVLGRYD-HNQM----YYIGGNSESVEQ-------DVI-------HSYTMAYGGGGFAI  246 (478)
Q Consensus       186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD-~~ep----~YIG~~se~~~~-------~~~-------~g~~fa~GGaG~vL  246 (478)
                      ...+++++.|+|+.+.++-|.++++.+. |+-.    +|.+.+......       +..       .+..|+. |+.+++
T Consensus        30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-G~~m~~  108 (175)
T PF13506_consen   30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGGAPFAW-GGSMAF  108 (175)
T ss_pred             CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcCCCcee-cceeee
Confidence            6789999999999999998888887663 4333    333433322100       000       0123333 566889


Q ss_pred             cHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015          247 SYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL  290 (478)
Q Consensus       247 Sr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~  290 (478)
                      .+.+++++....     ......++|..|++.+.+.|.++...+
T Consensus       109 rr~~L~~~GG~~-----~l~~~ladD~~l~~~~~~~G~~v~~~~  147 (175)
T PF13506_consen  109 RREALEEIGGFE-----ALADYLADDYALGRRLRARGYRVVLSP  147 (175)
T ss_pred             EHHHHHHcccHH-----HHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence            999988764221     111235789999999999888776554

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=92.18  E-value=0.37  Score=44.99  Aligned_cols=85  Identities=12%  Similarity=0.117  Sum_probs=57.7

Q ss_pred             CCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHHHHHHHhhhhhhccc
Q 044015          186 GDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRY  265 (478)
Q Consensus       186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~  265 (478)
                      ...+|++++|+|+.+.++-|.+++..+...+--.+|..              ...|+++++.+.+++++... +.    .
T Consensus        85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~--------------~~~g~~~~~r~~~~~~~ggf-~~----~  145 (196)
T cd02520          85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL--------------CAFGKSMALRREVLDAIGGF-EA----F  145 (196)
T ss_pred             CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee--------------cccCceeeeEHHHHHhccCh-HH----H
Confidence            45799999999999988888888876532222233322              34678999999999987543 11    1


Q ss_pred             ccCCCchHHHHHHHHhcCCceeec
Q 044015          266 ASFYGSDQKVQGCMAEIGVPVTKE  289 (478)
Q Consensus       266 ~~~~~gD~~L~~Ci~~lGV~LT~~  289 (478)
                      ....++|..|+.-+.+.|..+...
T Consensus       146 ~~~~~eD~~l~~rl~~~G~~i~~~  169 (196)
T cd02520         146 ADYLAEDYFLGKLIWRLGYRVVLS  169 (196)
T ss_pred             hHHHHHHHHHHHHHHHcCCeEEEc
Confidence            112357999988888777665433

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=91.52  E-value=0.71  Score=43.59  Aligned_cols=105  Identities=17%  Similarity=0.150  Sum_probs=56.5

Q ss_pred             HHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccC-CCCCCeEEeeccCCCCc-------c------------ccccc
Q 044015          176 IIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRY-DHNQMYYIGGNSESVEQ-------D------------VIHSY  235 (478)
Q Consensus       176 ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~y-D~~ep~YIG~~se~~~~-------~------------~~~g~  235 (478)
                      .+.+..+.  -..+|++++|||+.+.++-|.++++.+ ++.-...-|...-....       .            .....
T Consensus        77 a~n~~~~~--~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (228)
T PF13641_consen   77 ALNEALAA--ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRAL  154 (228)
T ss_dssp             HHHHHHHH-----SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B--
T ss_pred             HHHHHHHh--cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhccc
Confidence            44555543  238999999999999988888888777 44433333332110000       0            00001


Q ss_pred             c-ccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeec
Q 044015          236 T-MAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKE  289 (478)
Q Consensus       236 ~-fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~  289 (478)
                      . ....|+++++.+.+++++... +.      ...++|..++.-+...|.++...
T Consensus       155 ~~~~~~G~~~~~rr~~~~~~g~f-d~------~~~~eD~~l~~r~~~~G~~~~~~  202 (228)
T PF13641_consen  155 GVAFLSGSGMLFRRSALEEVGGF-DP------FILGEDFDLCLRLRAAGWRIVYA  202 (228)
T ss_dssp             --S-B--TEEEEEHHHHHHH-S---S------SSSSHHHHHHHHHHHTT--EEEE
T ss_pred             ceeeccCcEEEEEHHHHHHhCCC-CC------CCcccHHHHHHHHHHCCCcEEEE
Confidence            1 223579999999999998643 22      12568999998888888776543

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=89.66  E-value=1.5  Score=41.45  Aligned_cols=99  Identities=14%  Similarity=-0.041  Sum_probs=56.3

Q ss_pred             CccEEEEEcCcceechhHHHHHh---ccCCCCCCe-EEeeccCCCC-----cccc-------------cc--ccccccCc
Q 044015          187 DVRWFVLGDDDTVFFLENLVTVL---GRYDHNQMY-YIGGNSESVE-----QDVI-------------HS--YTMAYGGG  242 (478)
Q Consensus       187 ~~kWfv~~DDDTf~~~~nL~~~L---s~yD~~ep~-YIG~~se~~~-----~~~~-------------~g--~~fa~GGa  242 (478)
                      +.+|++++|+|+.+.++.|.+++   ..+...... .+|.......     ....             ..  ......|+
T Consensus        75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (237)
T cd02526          75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITS  154 (237)
T ss_pred             CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeecc
Confidence            78999999999999988888874   333322222 2222211100     0000             00  00112367


Q ss_pred             cceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015          243 GFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL  290 (478)
Q Consensus       243 G~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~  290 (478)
                      |.++++.+++++...-+..     ...++|..+..-+.+.|..+...+
T Consensus       155 ~~~~rr~~~~~~ggfd~~~-----~~~~eD~d~~~r~~~~G~~~~~~~  197 (237)
T cd02526         155 GSLISLEALEKVGGFDEDL-----FIDYVDTEWCLRARSKGYKIYVVP  197 (237)
T ss_pred             ceEEcHHHHHHhCCCCHHH-----cCccchHHHHHHHHHcCCcEEEEc
Confidence            8899999998876432221     113468888888877886654433

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=88.98  E-value=0.32  Score=53.32  Aligned_cols=65  Identities=22%  Similarity=0.380  Sum_probs=41.4

Q ss_pred             hhhhhhcccccCCCchHHHHHHHHh-cCCceeecCC-C--cCcCcC-CCCcCcccCCCCCCccccccCCCC
Q 044015          257 VLDGCIDRYASFYGSDQKVQGCMAE-IGVPVTKELG-F--HQIDIR-GDPYGLLAAHPLSPIVSLHHLDYV  322 (478)
Q Consensus       257 ~~~~C~~~~~~~~~gD~~L~~Ci~~-lGV~LT~~~g-f--hQ~D~~-gd~~G~~~~~~~~P~lSlHH~~~~  322 (478)
                      +++.|.....+ ..+|.+||+||.+ +||+||++.- +  |..... .+..+..+...+...||+|+.+..
T Consensus         1 hl~~C~~~~~s-~~~Dv~lGRCI~~~~gi~Ct~~~q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPvk~p   70 (499)
T PF05679_consen    1 HLDWCLKNIYS-NHEDVELGRCIKKFTGISCTWSYQGLFYHNYELNKNDFIGDLKNKEFHNAITLHPVKSP   70 (499)
T ss_pred             ChhHHhhhcCC-CCchhHHHHHHHHhcCCCeeecccceEEEeeccCCCcccccccchhhhcceeeccCCCH
Confidence            35789864322 3489999999985 8999999762 1  111222 222333444445677999999884

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=85.60  E-value=2.3  Score=39.36  Aligned_cols=85  Identities=19%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             CCccEEEEEcCcceechhHHHHHhccCC-CCCCeEEeeccCCCCccccccccccccCccceecHHHHHHHHHhhhhhhcc
Q 044015          186 GDVRWFVLGDDDTVFFLENLVTVLGRYD-HNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCIDR  264 (478)
Q Consensus       186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD-~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~  264 (478)
                      .+.+|++++|||..+..+.|.++++.++ +.-.++.|......      +     .++|+++.+.+++++... +.   .
T Consensus        78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~g~~-~~---~  142 (202)
T cd04185          78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPD------G-----SFVGVLISRRVVEKIGLP-DK---E  142 (202)
T ss_pred             cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCC------C-----ceEEEEEeHHHHHHhCCC-Ch---h
Confidence            4689999999999999888877777665 33333333322111      1     456789999998876421 11   1


Q ss_pred             cccCCCchHHHHHHHHhcCCce
Q 044015          265 YASFYGSDQKVQGCMAEIGVPV  286 (478)
Q Consensus       265 ~~~~~~gD~~L~~Ci~~lGV~L  286 (478)
                      + ..+++|..+..=+.+.|..+
T Consensus       143 ~-~~~~eD~~~~~r~~~~G~~i  163 (202)
T cd04185         143 F-FIWGDDTEYTLRASKAGPGI  163 (202)
T ss_pred             h-hccchHHHHHHHHHHcCCcE
Confidence            1 23568998887777777665

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=85.32  E-value=2.6  Score=39.63  Aligned_cols=81  Identities=19%  Similarity=0.305  Sum_probs=46.6

Q ss_pred             HHHHHHHHhCCCCccEEEEEcCcceechh---HHHHHhccCCCCCCeEEeeccC-------------------C--CCcc
Q 044015          175 RIIKETFRLGLGDVRWFVLGDDDTVFFLE---NLVTVLGRYDHNQMYYIGGNSE-------------------S--VEQD  230 (478)
Q Consensus       175 ~ml~e~~~~~~p~~kWfv~~DDDTf~~~~---nL~~~Ls~yD~~ep~YIG~~se-------------------~--~~~~  230 (478)
                      .+++++.+   .+.++.++.|||..+..+   .|.++++..+...-+..|....                   .  ....
T Consensus        76 ~~w~~~v~---~~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
T PF01755_consen   76 KAWQRIVD---SGLEYALILEDDVIFDPDFKEFLEEILSHIPDWDFLRLGGWKDNSYSPGDIFLSRLSTFLSRSKRYKRK  152 (200)
T ss_pred             HHHHHHHH---cCCCeEEEEeccccccccHHHHHHHHHhhcccccchhhccccccccccccccceeeeehhhhhhhcccC
Confidence            45566654   367999999999998842   3444444333223333322100                   0  0000


Q ss_pred             ---------ccccccccccCccceecHHHHHHHHHhh
Q 044015          231 ---------VIHSYTMAYGGGGFAISYPLAAELVRVL  258 (478)
Q Consensus       231 ---------~~~g~~fa~GGaG~vLSr~Ll~~L~~~~  258 (478)
                               .........|.+||+||+..|++|....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~t~aY~Is~~gA~kLL~~~  189 (200)
T PF01755_consen  153 PIPPFGSRKLIRPAKYPYGTCAYLISRKGARKLLEAS  189 (200)
T ss_pred             cccccCCceEEeecCCCCcceeeeeCHHHHHHHHHhC
Confidence                     0011234568889999999999999863

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=84.65  E-value=1.9  Score=40.62  Aligned_cols=93  Identities=12%  Similarity=0.004  Sum_probs=56.2

Q ss_pred             CccEEEEEcCcceechhHHHHHhccCCCCCC-eEEeec-cC-CCCcc--cc---------------ccc----cccccCc
Q 044015          187 DVRWFVLGDDDTVFFLENLVTVLGRYDHNQM-YYIGGN-SE-SVEQD--VI---------------HSY----TMAYGGG  242 (478)
Q Consensus       187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep-~YIG~~-se-~~~~~--~~---------------~g~----~fa~GGa  242 (478)
                      +.+|++++|+|+++.++.|.++++.++.+.. -.++.. .. .....  ..               .+.    .....|+
T Consensus        84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  163 (234)
T cd06421          84 TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGS  163 (234)
T ss_pred             CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCc
Confidence            6799999999999998888888887754332 233322 10 00000  00               000    1123478


Q ss_pred             cceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCce
Q 044015          243 GFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPV  286 (478)
Q Consensus       243 G~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~L  286 (478)
                      |.++++.+++++... ++      ..+++|..++.=+...|..+
T Consensus       164 ~~~~r~~~~~~ig~~-~~------~~~~eD~~l~~r~~~~g~~i  200 (234)
T cd06421         164 GAVVRREALDEIGGF-PT------DSVTEDLATSLRLHAKGWRS  200 (234)
T ss_pred             eeeEeHHHHHHhCCC-Cc------cceeccHHHHHHHHHcCceE
Confidence            999999999887542 11      12568988887666666544

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2

Probab=84.37  E-value=2.1  Score=39.50  Aligned_cols=93  Identities=15%  Similarity=0.120  Sum_probs=55.9

Q ss_pred             EEEEEcCcceechhHHHHHhccCCCCCCeEEeec-c----CCC---Ccccc--------------ccccccccCccceec
Q 044015          190 WFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGN-S----ESV---EQDVI--------------HSYTMAYGGGGFAIS  247 (478)
Q Consensus       190 Wfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~-s----e~~---~~~~~--------------~g~~fa~GGaG~vLS  247 (478)
                      |++++|+||.+..+-|.+.+..++..+--.++.+ .    .+.   .+...              .+.....-|+|.+++
T Consensus         1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~r   80 (193)
T PF13632_consen    1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLFR   80 (193)
T ss_pred             CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceeee
Confidence            7899999999999888888877762111112111 1    100   01000              111123458999999


Q ss_pred             HHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceee
Q 044015          248 YPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTK  288 (478)
Q Consensus       248 r~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~  288 (478)
                      +.+++++...-      .....++|..++.=+.+.|-++..
T Consensus        81 ~~~l~~vg~~~------~~~~~~ED~~l~~~l~~~G~~~~~  115 (193)
T PF13632_consen   81 REALREVGGFD------DPFSIGEDMDLGFRLRRAGYRIVY  115 (193)
T ss_pred             HHHHHHhCccc------ccccccchHHHHHHHHHCCCEEEE
Confidence            99999876431      012356899988877777755543

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=83.13  E-value=2.8  Score=39.94  Aligned_cols=95  Identities=8%  Similarity=-0.014  Sum_probs=55.0

Q ss_pred             CCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCC--CC-------ccc--------------cccccccccCc
Q 044015          186 GDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSES--VE-------QDV--------------IHSYTMAYGGG  242 (478)
Q Consensus       186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~--~~-------~~~--------------~~g~~fa~GGa  242 (478)
                      ...+|++++|+|+.+.++-|.+++..+...+--.++.....  ..       +..              ..+..+...|+
T Consensus        86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  165 (232)
T cd06437          86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGT  165 (232)
T ss_pred             CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccc
Confidence            36899999999999998888886655533332233332110  00       000              00101123466


Q ss_pred             cceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCcee
Q 044015          243 GFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVT  287 (478)
Q Consensus       243 G~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT  287 (478)
                      +.++.+.+++++... +.      ..+.+|..|..-+...|.++.
T Consensus       166 ~~~~rr~~~~~vgg~-~~------~~~~ED~~l~~rl~~~G~~~~  203 (232)
T cd06437         166 AGVWRKECIEDAGGW-NH------DTLTEDLDLSYRAQLKGWKFV  203 (232)
T ss_pred             hhhhhHHHHHHhCCC-CC------CcchhhHHHHHHHHHCCCeEE
Confidence            667888888776432 21      124689999988877775543

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

Probab=82.76  E-value=2.6  Score=39.25  Aligned_cols=67  Identities=13%  Similarity=0.135  Sum_probs=42.1

Q ss_pred             CccEEEEEcCcceechhHHHHHhccCCCCCCeEEeecc--CCCCccc---------------------cccccccccCcc
Q 044015          187 DVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNS--ESVEQDV---------------------IHSYTMAYGGGG  243 (478)
Q Consensus       187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~s--e~~~~~~---------------------~~g~~fa~GGaG  243 (478)
                      ..+|++++|.|+.+.++.|..++..+...+-..++...  .+...+.                     ..+ .+..||.|
T Consensus        89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~G~~  167 (191)
T cd06436          89 ERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTG-TVGLGGNG  167 (191)
T ss_pred             CccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cEEECCee
Confidence            45799999999999988888866555422222332221  1100000                     011 24579999


Q ss_pred             ceecHHHHHHH
Q 044015          244 FAISYPLAAEL  254 (478)
Q Consensus       244 ~vLSr~Ll~~L  254 (478)
                      .++++.+++++
T Consensus       168 ~~~r~~~l~~v  178 (191)
T cd06436         168 QFMRLSALDGL  178 (191)
T ss_pred             EEEeHHHHHHh
Confidence            99999999998

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=82.68  E-value=4.8  Score=38.02  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=25.0

Q ss_pred             CccEEEEEcCcceechhHHHHHhccCC
Q 044015          187 DVRWFVLGDDDTVFFLENLVTVLGRYD  213 (478)
Q Consensus       187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD  213 (478)
                      +.+|++++|+|+.+..+.|.+++..++
T Consensus        77 ~~d~v~~lD~D~~~~~~~l~~l~~~~~  103 (235)
T cd06434          77 TTDIVVLLDSDTVWPPNALPEMLKPFE  103 (235)
T ss_pred             CCCEEEEECCCceeChhHHHHHHHhcc
Confidence            689999999999999999999998886

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=82.43  E-value=3.5  Score=40.77  Aligned_cols=106  Identities=14%  Similarity=0.042  Sum_probs=56.2

Q ss_pred             HHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCC--CCeEEeeccCCC-----Cccc-----------------
Q 044015          176 IIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHN--QMYYIGGNSESV-----EQDV-----------------  231 (478)
Q Consensus       176 ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~--ep~YIG~~se~~-----~~~~-----------------  231 (478)
                      -++.+.+   .+.+|++++|||+.+..+.|.+++..++..  .-..+|...-+.     .+..                 
T Consensus        65 Gi~~a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (281)
T TIGR01556        65 GLDASFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTT  141 (281)
T ss_pred             HHHHHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCC
Confidence            3444443   368999999999999977777776655432  223333321000     0000                 


Q ss_pred             cccccccccCccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCceeecC
Q 044015          232 IHSYTMAYGGGGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVTKEL  290 (478)
Q Consensus       232 ~~g~~fa~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT~~~  290 (478)
                      .....+ ..++|.++++.+++++...-+..     -...+|.++..=+.+.|..+...+
T Consensus       142 ~~~~~~-~~~sg~li~~~~~~~iG~fde~~-----fi~~~D~e~~~R~~~~G~~i~~~~  194 (281)
T TIGR01556       142 PQKTSF-LISSGCLITREVYQRLGMMDEEL-----FIDHVDTEWSLRAQNYGIPLYIDP  194 (281)
T ss_pred             ceeccE-EEcCcceeeHHHHHHhCCccHhh-----cccchHHHHHHHHHHCCCEEEEeC
Confidence            000011 23567899999998875421111     113457665433345676554443

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=81.94  E-value=4.6  Score=37.62  Aligned_cols=94  Identities=13%  Similarity=0.022  Sum_probs=54.9

Q ss_pred             CCccEEEEEcCcceechhHHHHHhccCC-CCCCeEEeeccCCCCc-------cc-------------cccccccccCccc
Q 044015          186 GDVRWFVLGDDDTVFFLENLVTVLGRYD-HNQMYYIGGNSESVEQ-------DV-------------IHSYTMAYGGGGF  244 (478)
Q Consensus       186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD-~~ep~YIG~~se~~~~-------~~-------------~~g~~fa~GGaG~  244 (478)
                      ...+|++++|+|+.+.++-|.+++..+. +....+.|........       ..             ..+..+..-|+++
T Consensus        81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  160 (229)
T cd04192          81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANM  160 (229)
T ss_pred             hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceE
Confidence            4579999999999998888888887554 4445566654322100       00             0111233357888


Q ss_pred             eecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCC
Q 044015          245 AISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGV  284 (478)
Q Consensus       245 vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV  284 (478)
                      ++++.+++++-..-+.     .....+|..+..-+...|-
T Consensus       161 ~~rr~~~~~~ggf~~~-----~~~~~eD~~~~~~~~~~g~  195 (229)
T cd04192         161 AYRKEAFFEVGGFEGN-----DHIASGDDELLLAKVASKY  195 (229)
T ss_pred             EEEHHHHHHhcCCccc-----cccccCCHHHHHHHHHhCC
Confidence            9999999987543110     1123466666554444443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis

Probab=81.61  E-value=2.8  Score=37.10  Aligned_cols=46  Identities=17%  Similarity=0.414  Sum_probs=37.0

Q ss_pred             HHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccccccccccccCccceecHHHHHHH
Q 044015          175 RIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDVIHSYTMAYGGGGFAISYPLAAEL  254 (478)
Q Consensus       175 ~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~~~g~~fa~GGaG~vLSr~Ll~~L  254 (478)
                      .+++++.+   .+.++.++.|||..+..+                                    |.+||+||+.++++|
T Consensus        73 ~~w~~~~~---~~~~~alIlEDDv~~~~~------------------------------------~~~~Y~vs~~~A~~l  113 (128)
T cd06532          73 KLWQKIVE---SNLEYALILEDDAILDPD------------------------------------GTAGYLVSRKGAKKL  113 (128)
T ss_pred             HHHHHHHH---cCCCeEEEEccCcEECCC------------------------------------CceEEEeCHHHHHHH
Confidence            34555554   466899999999999876                                    778999999999999


Q ss_pred             HHhhh
Q 044015          255 VRVLD  259 (478)
Q Consensus       255 ~~~~~  259 (478)
                      .....
T Consensus       114 l~~~~  118 (128)
T cd06532         114 LAALE  118 (128)
T ss_pred             HHhCC
Confidence            98643

The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=80.74  E-value=3  Score=40.14  Aligned_cols=94  Identities=11%  Similarity=0.042  Sum_probs=57.6

Q ss_pred             CccEEEEEcCcceechhHHHHHhccCCCC--CCeEEeeccCCC--Cccc---------------------cccccccccC
Q 044015          187 DVRWFVLGDDDTVFFLENLVTVLGRYDHN--QMYYIGGNSESV--EQDV---------------------IHSYTMAYGG  241 (478)
Q Consensus       187 ~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~--ep~YIG~~se~~--~~~~---------------------~~g~~fa~GG  241 (478)
                      ..+|++++|+|+.+.++.|.+++..+...  +-.++|......  .+..                     ..+.....+|
T Consensus        84 ~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  163 (241)
T cd06427          84 RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGG  163 (241)
T ss_pred             CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence            46999999999999998888888776432  233444331110  0000                     0011234578


Q ss_pred             ccceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCcee
Q 044015          242 GGFAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVT  287 (478)
Q Consensus       242 aG~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT  287 (478)
                      +++++++.+++++...- .      ..+.+|..+..=+...|..+.
T Consensus       164 ~~~~~rr~~~~~vgg~~-~------~~~~eD~~l~~rl~~~G~r~~  202 (241)
T cd06427         164 TSNHFRTDVLRELGGWD-P------FNVTEDADLGLRLARAGYRTG  202 (241)
T ss_pred             chHHhhHHHHHHcCCCC-c------ccchhhHHHHHHHHHCCceEE
Confidence            88999999988875431 1      124578887766666665553

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=80.26  E-value=9.1  Score=36.24  Aligned_cols=95  Identities=14%  Similarity=0.104  Sum_probs=57.4

Q ss_pred             CCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCccc-------cccc---------------cccccCcc
Q 044015          186 GDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQDV-------IHSY---------------TMAYGGGG  243 (478)
Q Consensus       186 p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~~-------~~g~---------------~fa~GGaG  243 (478)
                      .+.+|++++|+|+.+.++.|.++++.+...+--.++..........       .+.+               .....|++
T Consensus        83 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  162 (236)
T cd06435          83 PDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTM  162 (236)
T ss_pred             CCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecce
Confidence            4579999999999999988888887775323234443211100000       0000               01124677


Q ss_pred             ceecHHHHHHHHHhhhhhhcccccCCCchHHHHHHHHhcCCcee
Q 044015          244 FAISYPLAAELVRVLDGCIDRYASFYGSDQKVQGCMAEIGVPVT  287 (478)
Q Consensus       244 ~vLSr~Ll~~L~~~~~~C~~~~~~~~~gD~~L~~Ci~~lGV~LT  287 (478)
                      .++++.+++++.. ++.+      .+.+|..++.=+...|-++.
T Consensus       163 ~~~rr~~~~~iGg-f~~~------~~~eD~dl~~r~~~~G~~~~  199 (236)
T cd06435         163 CLIRRSALDDVGG-WDEW------CITEDSELGLRMHEAGYIGV  199 (236)
T ss_pred             EEEEHHHHHHhCC-CCCc------cccchHHHHHHHHHCCcEEE
Confidence            8999999998754 2322      24689888877777775543

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	478
2j0a_A	280	Beta-1,3-N-acetylglucosaminyltransferase manic FR;	1e-32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A* Length = 280

 Score =  124 bits (312), Expect = 1e-32
 Identities = 49/268 (18%), Positives = 95/268 (35%), Gaps = 30/268 (11%)

Query: 95  PKTNVSHIVFGIGGSANTWDDRRHYCELWWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQ 154
            +  +  I   +  +      R       W   + +      + P++       P+ V  
Sbjct: 8   LELQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQERLGPHLVVT 67

Query: 155 DTSRFQYTSWYGTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDH 214
             S  +++    +       ++  E     +  +RWF   DDD     + L+ +L  +  
Sbjct: 68  QCSA-EHSHPALSC------KMAAEFDAFLVSGLRWFCHVDDDNYVNPKALLQLLKTFPQ 120

Query: 215 NQMYYIGGNS----------ESVEQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGC--I 262
           ++  Y+G  S          +S ++  +  +  A GG GF I+  LA ++V    G   +
Sbjct: 121 DRDVYVGKPSLNRPIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFV 180

Query: 263 DRYASFYGSDQKVQGCMAE--IGVPVTKELGFHQIDIRGDPYGLLAAHPLSPIVSLHHLD 320
           D  A     D    G + E  +G  +     FH      +   LL A  L   V+L +  
Sbjct: 181 DTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHS---HLETLQLLGAAQLPEQVTLSY-- 235

Query: 321 YVLPIFPNMSQIESLKKLMGAYKTDPNR 348
               +F     +  L     +++ DP+R
Sbjct: 236 ---GVFEGKLNVIKLPGPF-SHEEDPSR 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 78/524 (14%), Positives = 160/524 (30%), Gaps = 139/524 (26%)

Query: 15  KTWKLLVSPLIKPMDIVSLFMKSAL-----FIFTVIS--------IYLLFFYALSNKLHY 61
            T +L  + L K  ++V  F++  L     F+ + I         +  ++     ++L+ 
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLY- 120

Query: 62  STSNCPQSQCDTNRLLSSQKKLLTRQNTTLYN-EPKTNVSHIVFGIGGSANTW------D 114
              N   ++ + +R      +   +    L    P  NV  ++ G+ GS  TW       
Sbjct: 121 -NDNQVFAKYNVSR-----LQPYLKLRQALLELRPAKNV--LIDGVLGSGKTWVALDVCL 172

Query: 115 DRRHYCEL-----WWKPGLTRGFVWLDEKPNKTWPATSPPYKVSQDTSRFQYTSWYGTRS 169
             +  C++     W           + E   K      P +    D S       +  ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 170 AIRIARIIKETFR----LGLGDVRW-------FVLG--------DDDTVFFLENLVTVLG 210
            +R  R++K        L L +V         F L               FL    T   
Sbjct: 233 ELR--RLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 211 RYDHNQMYYIGGNSESV--------EQDVIHSYTMAYGGGGFAISYPLAAELVRVLDGCI 262
             DH+ M       +S+         QD+              +S  + AE +R      
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPRRLS--IIAESIRDGLATW 344

Query: 263 DRYASFYGSDQK---VQGCMAEIGVPVTKELGFHQIDI--------------------RG 299
           D +      D+    ++  +  +     +++ F ++ +                    + 
Sbjct: 345 DNWKH-VNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 300 DP---------YGLLAAHPLSPIVSLH--HLDYVLPIFPNMSQIESLKKLMGAYKTDPNR 348
           D          Y L+   P    +S+   +L+  + +  N   +   + ++  Y      
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL-ENEYALH--RSIVDHYN----- 454

Query: 349 AVQQSFCY-DLSRNWTVSVSW---GYTVQLYPSLETAKRLETAYLTFKSW---------R 395
            + ++F   DL   +     +   G+ ++     E        +L F+ +          
Sbjct: 455 -IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKIRHDST 512

Query: 396 SWSDEPFTFNT--------QYFSPN-PC-ERPIIYFLDRVQKVG 429
           +W+      NT         Y   N P  ER +   LD + K+ 
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	478
2j0a_A	280	Beta-1,3-N-acetylglucosaminyltransferase manic FR;	99.97

>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*

Probab=99.97  E-value=1.6e-32  Score=273.72  Aligned_cols=214  Identities=18%  Similarity=0.189  Sum_probs=145.9

Q ss_pred             CCCCCCCCCCeEEEEEecCccchHhHHHHHHHhccCC-CcceEEEeecCCCCCCCCCCCCe----eeCCCCCcccccccc
Q 044015           91 LYNEPKTNVSHIVFGIGGSANTWDDRRHYCELWWKPG-LTRGFVWLDEKPNKTWPATSPPY----KVSQDTSRFQYTSWY  165 (478)
Q Consensus        91 ~~~~~~~~~s~IvFgI~Ts~k~~~~R~~~ik~Ww~~~-~~r~~vfld~~~~~~~~~~lP~v----~is~~~s~~~yt~~~  165 (478)
                      ++.++++++++|+|+|+|+.++|.+|+++|+.||.+. ..+++||+|.++.     .+|.+    .+.++.+. .++. .
T Consensus         4 ~~~~~~~~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~~~fifsd~~d~-----~l~~~~~~~~~~~~~~~-~~~~-~   76 (280)
T 2j0a_A            4 NPGPLELQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDE-----RLQERLGPHLVVTQCSA-EHSH-P   76 (280)
T ss_dssp             -----CCCGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGGGEEEEESSCCH-----HHHHHHGGGEEECCC---------
T ss_pred             CCCCCCCCcccEEEEEECcHHHHHHHHHHHHHHHhccCCCceEEEcCCCcc-----cccccccccceeccccc-cccc-c
Confidence            4556789999999999999999999999998888654 3567889887632     12221    12222211 1221 1


Q ss_pred             CcchHHHHHHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccCCCCCCeEEeeccCCCCcc----------ccccc
Q 044015          166 GTRSAIRIARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRYDHNQMYYIGGNSESVEQD----------VIHSY  235 (478)
Q Consensus       166 g~~s~~Ri~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~yD~~ep~YIG~~se~~~~~----------~~~g~  235 (478)
                      +..  .++..++....   .+++|||+++||||||+++||+++|++|||++++|||.+++.....          ...++
T Consensus        77 ~l~--~K~~~~~~~~l---~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~~~~~~~~~~~~~~~  151 (280)
T 2j0a_A           77 ALS--CKMAAEFDAFL---VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKQRTKLVRF  151 (280)
T ss_dssp             CCC--HHHHHHHHHHH---HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------C
T ss_pred             chH--HHHHHHHHHHh---CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccccccCcccccccccc
Confidence            222  23444444322   3699999999999999999999999999999999999998664210          11246


Q ss_pred             cccccCccceecHHHHHHHHHhhhhhh--ccccc-CCCchHHHHHHHH-hcCCceeecCCCcCcCcC-CCC-cCcccCCC
Q 044015          236 TMAYGGGGFAISYPLAAELVRVLDGCI--DRYAS-FYGSDQKVQGCMA-EIGVPVTKELGFHQIDIR-GDP-YGLLAAHP  309 (478)
Q Consensus       236 ~fa~GGaG~vLSr~Ll~~L~~~~~~C~--~~~~~-~~~gD~~L~~Ci~-~lGV~LT~~~gfhQ~D~~-gd~-~G~~~~~~  309 (478)
                      .||+|||||+||++|+++|.++.+.|.  ..... ...+|+.||+||+ ++||+++++++|||.... ++. ...+..  
T Consensus       152 ~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~~~~~~~~~~~l~~--  229 (280)
T 2j0a_A          152 WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLETLQLLGAAQLPE--  229 (280)
T ss_dssp             CEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSSSCGGGCCTTTGGG--
T ss_pred             CcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCCchhccCCHHHhcc--
Confidence            799999999999999999999877662  11111 2457999999999 899999999999997652 222 223332  


Q ss_pred             CCCccccccC
Q 044015          310 LSPIVSLHHL  319 (478)
Q Consensus       310 ~~P~lSlHH~  319 (478)
                       +..+|+|.+
T Consensus       230 -~~~~s~~~~  238 (280)
T 2j0a_A          230 -QVTLSYGVF  238 (280)
T ss_dssp             -CSEEECEEE
T ss_pred             -Ccceecccc
Confidence             355899943

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	478
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	85.04

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=85.04  E-value=0.72  Score=40.58  Aligned_cols=105  Identities=10%  Similarity=0.196  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhCCCCccEEEEEcCcceechhHHHHHhccC--CCCCCeEEeeccC-----CC---------Cccccccccc
Q 044015          174 ARIIKETFRLGLGDVRWFVLGDDDTVFFLENLVTVLGRY--DHNQMYYIGGNSE-----SV---------EQDVIHSYTM  237 (478)
Q Consensus       174 ~~ml~e~~~~~~p~~kWfv~~DDDTf~~~~nL~~~Ls~y--D~~ep~YIG~~se-----~~---------~~~~~~g~~f  237 (478)
                      ...+....+.  -+.+|++++|+|.++.++.|..+++.+  +++..++.|....     ..         .........+
T Consensus        77 ~~a~N~gi~~--a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (255)
T d1qg8a_          77 AALINQAIEM--AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQVTWNAPC  154 (255)
T ss_dssp             HHHHHHHHHH--CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEEEEEECCCSCBSCCTT
T ss_pred             cccccccccc--cccccccccccccccccchHHHHHHHHHhCCCCCeEeecceeeeeCCCCcEeeeecccchhhhhhhcc
Confidence            3444555543  257999999999988876666555443  4454554443210     00         0001112335


Q ss_pred             cccCccceecHHHHHHHHHhhhhhhcccccC-CCchHHHHHHHH
Q 044015          238 AYGGGGFAISYPLAAELVRVLDGCIDRYASF-YGSDQKVQGCMA  280 (478)
Q Consensus       238 a~GGaG~vLSr~Ll~~L~~~~~~C~~~~~~~-~~gD~~L~~Ci~  280 (478)
                      ..+++++++++.+++++........+..... ..+|..+...+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~dl~lrl~  198 (255)
T d1qg8a_         155 AIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVN  198 (255)
T ss_dssp             TSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHT
T ss_pred             cccchhHHHHHHHHHHHHHhhCCCccccchhcchhhHHHHHHHH
Confidence            6788899999999999887654443322111 347887765554