Citrus Sinensis ID: 044019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLTSLSTCRLSASSSLGVGHRHRHTVIYGY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
MINSIRLVQLASKWQKIVATKrkrisfprsvatqkssvankghfvvyttdntrftvplEYLSRSVFIELLRMSeeefglpsdgpitlpcdSTFFKYVMSLVKGCIPEDLVKALLTSLStcrlsassslgvghrhrhtviygy
Flexible Loop (DISEMBL)
minsirlvqLASKWQKIVatkrkrisfprsvatqkssvankghfvvyttdntrftvplEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLTSLSTCRLsassslgvghrhrhtviygy
Low Complexity Region (SEG)
MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKalltslstcrlsassslGVGHRHRHTVIYGY
Disordered region (IsUnstruct)
****IRLVQLASKWQKIVATKRKRISFPRSVA****SVANKGHFVVYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLTSLSTCRLSASSSLGVGHRHRHTVIY**
Disordered Region (DISOPRED)
**NSIRLVQLASKW****************************HFVVYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLV***********LLTSLS*****************H*VIYG*
Disordered Region (DISEMBL)
MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLTSLSTCRL*********HRHRHTVIYGY
Disordered Region (DISPRO)
*INSIRLVQLASKWQKIVATKR***************VANKGHFVVYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLTSLSTCRLSASS******RHRHTVIYGY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLTSLSTCRLSASSSLGVGHRHRHTVIYGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.563	0.888	0.329	1e-07
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.542	0.836	0.375	3e-07
P33079	93	Auxin-induced protein 10A	no	no	0.507	0.774	0.405	2e-06
P33080	92	Auxin-induced protein X10	no	no	0.542	0.836	0.379	3e-06
P33081	82	Auxin-induced protein 15A	no	no	0.478	0.829	0.357	1e-05
P33082	82	Auxin-induced protein X15	no	no	0.415	0.719	0.360	0.0002

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 23  KRISFPRSVATQKSSVANKGHFVVYTTDNTR-FTVPLEYLSRSVFIELLRMSEEEFGL-P 80
           ++ SF  + A+ K+    KG+  VY  +  R F +P+ YL++  F +LL  +EEEFG   
Sbjct: 9   RKASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHH 68

Query: 81  SDGPITLPCDSTFFKYVMSLVK 102
            +G +T+PC    F+++ S + 
Sbjct: 69  PNGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 22 RKRISFPRSVATQKSSVANKGHFVVYTTDNT-RFTVPLEYLSRSVFIELLRMSEEEFGLP 80
          RK +S  R+ A+ K   A KG+  VY  +N  RF +P+ +L++ +F +LL  +EEEFG  
Sbjct: 9  RKTLS-ARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYD 67

Query: 81 SD-GPITLPCDSTFFKYVMS 99
             G +T+PC    F+++ S
Sbjct: 68 HPMGGLTIPCSEDLFQHITS 87

Vigna radiata var. radiata (taxid: 3916)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 23 KRISFPRSVATQKSSVANKGHFVVYTTDNTR-FTVPLEYLSRSVFIELLRMSEEEFGLPS 81
          +R SF  + A  K     KG+  VY  D  R FT+P+ YL+   F ELL  +EEEFG   
Sbjct: 10 RRTSFYTTQAASKRVDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDH 69

Query: 82 D-GPITLPCDSTFF 94
            G +T+PC    F
Sbjct: 70 PMGGLTIPCKEEEF 83

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 23 KRISFPRSVATQKSSVANKGHFVVYTTDNTR-FTVPLEYLSRSVFIELLRMSEEEFGLPS 81
          ++ S   + A+ KS    KG+ VVY  D  R F +P+ YL++  F +LL  +EEEFG   
Sbjct: 9  RKTSIAANQASSKSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDH 68

Query: 82 D-GPITLPCDSTFFKYVMS 99
            G +T+PC    F  V S
Sbjct: 69 PMGGLTIPCKEDEFLTVTS 87

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 35  KSSVANKGHFVVYTTDN-TRFTVPLEYLSRSVFIELLRMSEEEFGLPSD-GPITLPCDST 92
           K++ A KG+  VY  +   RF +P+ YL++  F +LL  +EEEFG     G +T+PC   
Sbjct: 13  KAADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSED 72

Query: 93  FFKYVMSLVK 102
            F+ + S + 
Sbjct: 73  VFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 39 ANKGHFVVYTTDNT-RFTVPLEYLSRSVFIELLRMSEEEFGLPSD-GPITLPCDSTFFKY 96
          A KG+  VY  +   RF +P+ Y+++  F +LL  +EEEFG     G +T+PC    F+ 
Sbjct: 17 APKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQR 76

Query: 97 V 97
          +
Sbjct: 77 I 77

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
356540954	149	PREDICTED: uncharacterized protein LOC10	1.0	0.953	0.543	3e-38
297744512	141	unnamed protein product [Vitis vinifera]	0.936	0.943	0.548	1e-36
225428223	148	PREDICTED: indole-3-acetic acid-induced	0.978	0.939	0.489	5e-35
225428294	146	PREDICTED: auxin-induced protein 6B-like	0.992	0.965	0.523	4e-34
225428233	147	PREDICTED: uncharacterized protein LOC10	1.0	0.965	0.482	6e-34
297744507	254	unnamed protein product [Vitis vinifera]	0.964	0.539	0.489	2e-33
297744481	290	unnamed protein product [Vitis vinifera]	0.894	0.437	0.553	4e-33
225428229	148	PREDICTED: uncharacterized protein LOC10	0.880	0.844	0.534	5e-33
297744514	142	unnamed protein product [Vitis vinifera]	0.880	0.880	0.531	3e-32
297744511	148	unnamed protein product [Vitis vinifera]	0.830	0.797	0.548	3e-32

>gi|356540954|ref|XP_003538949.1| PREDICTED: uncharacterized protein LOC100802572 [Glycine max]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 105/149 (70%), Gaps = 7/149 (4%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFP-----RSVATQKSSVANKGHFVVYTTDNTRFT 55
           MI++ RL+++A KWQK+    RKRIS+P      +V    SS ANKGHFVVY+ D+ RF 
Sbjct: 1   MISANRLIEMARKWQKMAVGNRKRISYPPRNHNNNVHMHYSSTANKGHFVVYSVDHKRFE 60

Query: 56  VPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLT 115
           VPL+YLS +VF ELL  SEEEFGLPS+GPITLPCDS F  YV+SL++  +PE++ KAL+T
Sbjct: 61  VPLKYLSTNVFRELLNWSEEEFGLPSNGPITLPCDSVFLDYVISLIRERVPEEVEKALIT 120

Query: 116 SLSTCRLSASSSLGVGHRHRHT--VIYGY 142
           S+  C   ASSS   G R  +   +IYG+
Sbjct: 121 SMVACHHEASSSSSRGLRQSNEPMIIYGF 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744512|emb|CBI37774.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 99/135 (73%), Gaps = 2/135 (1%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTDNTRFTVPLEY 60
           MIN  +L+++A KWQKI A KRKRI+ PR+     + VANKGHFVVYT D  RF +PL +
Sbjct: 1   MINPKKLIKMARKWQKIAAMKRKRITLPRTDEILDADVANKGHFVVYTADQRRFMIPLVF 60

Query: 61  LSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLTSLST- 119
           LS ++F EL RMSEEEFGLPS+GPITLP DS F +Y++ L++  + +D+ KALL S++T 
Sbjct: 61  LSNNIFRELFRMSEEEFGLPSNGPITLPYDSVFMEYIIPLIQRGMAKDIEKALLISIATS 120

Query: 120 -CRLSASSSLGVGHR 133
            C LS+S    +GH+
Sbjct: 121 RCSLSSSHQGQMGHQ 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428223|ref|XP_002279270.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 105/145 (72%), Gaps = 6/145 (4%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFPR------SVATQKSSVANKGHFVVYTTDNTRF 54
           MI++ +L+++A KWQK+ A +RKRIS PR      + +   SS A KGHFVVY+ D +RF
Sbjct: 1   MISAKKLIKMARKWQKMAAIRRKRISLPRTSREVDAESCSTSSTAEKGHFVVYSADESRF 60

Query: 55  TVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALL 114
            VPL YL+ ++F EL +MSEEEFGLPS+GPITLPCD+ F +Y++SLV+  I +DL KALL
Sbjct: 61  VVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALL 120

Query: 115 TSLSTCRLSASSSLGVGHRHRHTVI 139
           T+++T R  ++S++     ++  ++
Sbjct: 121 TAIATGRCLSTSNICQEQGNQQLLV 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428294|ref|XP_002282698.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 102/147 (69%), Gaps = 6/147 (4%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFPRSVA-----TQKSSVANKGHFVVYTTDNTRFT 55
           MI+  +L+++A KWQ+  A  RKRIS PR+ A     T  +SVA+KGHFVVY TD  RF 
Sbjct: 1   MISPKKLIKMARKWQRRAALGRKRISSPRTDADMDAGTCSTSVADKGHFVVYPTDKRRFM 60

Query: 56  VPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLT 115
           +PL YLS ++F EL +MSEEEFGL SDGPITLPCDS F +Y++ L++  + +D+ KAL+ 
Sbjct: 61  IPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALIF 120

Query: 116 SLSTCRLSASSSLGVGHRHRHTVIYGY 142
           SL T R S SSS    H  +H ++ GY
Sbjct: 121 SLVTSRCSQSSS-HQEHISQHLLVCGY 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428233|ref|XP_002279337.1| PREDICTED: uncharacterized protein LOC100257266 [Vitis vinifera]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 103/147 (70%), Gaps = 5/147 (3%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKS-----SVANKGHFVVYTTDNTRFT 55
           MI++ +L+++A  WQK+ A +RKRI  PR+     +     S A KGHFVVY++D +RF 
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPRTSGEVDADGCSTSTAEKGHFVVYSSDESRFV 60

Query: 56  VPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLT 115
           VPL YL+ ++F EL +MSEEEFGLPS+GPITLPCD+ F +Y++SLV+  I +DL KALLT
Sbjct: 61  VPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALLT 120

Query: 116 SLSTCRLSASSSLGVGHRHRHTVIYGY 142
           +++T    ++S+L      +  +I GY
Sbjct: 121 AIATGCCLSTSNLCQEQGSQQLLICGY 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744507|emb|CBI37769.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 94/137 (68%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTDNTRFTVPLEY 60
           MI++ +L+++A  WQK+ A +RKRI  PR+     + VA+KGHFVVYT+D  RF VPL Y
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPRTSGEVDADVADKGHFVVYTSDRIRFVVPLVY 60

Query: 61  LSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLTSLSTC 120
           L   +F EL +M+EEEFGLP +GPI LPCD+ F +Y +SL++  + +DL KALL S++  
Sbjct: 61  LDNVIFRELFQMAEEEFGLPGNGPIILPCDAVFMEYAVSLIQRHVAKDLEKALLMSIAAD 120

Query: 121 RLSASSSLGVGHRHRHT 137
           R S+SS       + HT
Sbjct: 121 RCSSSSYFHQDQSNPHT 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744481|emb|CBI37743.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 95/132 (71%), Gaps = 5/132 (3%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFPRSVA-----TQKSSVANKGHFVVYTTDNTRFT 55
           MI+  +L+++A KWQ+  A  RKRIS PR+ A     T  +SVA+KGHFVVY TD  RF 
Sbjct: 1   MISPKKLIKMARKWQRRAALGRKRISSPRTDADMDAGTCSTSVADKGHFVVYPTDKRRFM 60

Query: 56  VPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLT 115
           +PL YLS ++F EL +MSEEEFGL SDGPITLPCDS F +Y++ L++  + +D+ KAL+ 
Sbjct: 61  IPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALIF 120

Query: 116 SLSTCRLSASSS 127
           SL T R S SSS
Sbjct: 121 SLVTSRCSQSSS 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428229|ref|XP_002279305.1| PREDICTED: uncharacterized protein LOC100267542 [Vitis vinifera]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 94/131 (71%), Gaps = 6/131 (4%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFPRSVA------TQKSSVANKGHFVVYTTDNTRF 54
           MIN  +L+++A +WQK+ A +RKRIS PR+           SSVA+KGHFVVYT D  RF
Sbjct: 1   MINPKKLIKMAREWQKVAAIRRKRISLPRTSQYLGAGHCSTSSVADKGHFVVYTADQRRF 60

Query: 55  TVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALL 114
            +PL YL+  +F EL  MSEEEFGLPSDGPITLPCDS F +Y++ LV+  + ++L KALL
Sbjct: 61  MIPLVYLNSEIFRELFEMSEEEFGLPSDGPITLPCDSFFMEYILFLVQRGVAKNLEKALL 120

Query: 115 TSLSTCRLSAS 125
           TS++  + S++
Sbjct: 121 TSVAHTQSSSA 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744514|emb|CBI37776.3| unnamed protein product [Vitis vinifera]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 94/128 (73%), Gaps = 3/128 (2%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSS-VANKGHFVVYTTDNTRFTVPLE 59
           MIN  +L+++A KWQK+ A +RKRIS PR+     +  +A+KGHFVVYTTD  RF +PL 
Sbjct: 1   MINPKKLIKMARKWQKMAAMRRKRISLPRTDEVLDADRLADKGHFVVYTTDKRRFMIPLA 60

Query: 60  YLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALLTSLST 119
           YLS ++  EL +M+EEEFGL S+GPITLPCDS F +Y++ L++  + +D+ KALL SL+T
Sbjct: 61  YLSNNILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFSLAT 120

Query: 120 --CRLSAS 125
             C L +S
Sbjct: 121 SCCSLLSS 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744511|emb|CBI37773.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/124 (54%), Positives = 89/124 (71%), Gaps = 6/124 (4%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFPRSVAT------QKSSVANKGHFVVYTTDNTRF 54
           MIN  +L+++A +WQK+ A +RKRIS PR+           SSVA+KGHFVVYT D  RF
Sbjct: 1   MINPKKLIKMAREWQKVAAIRRKRISLPRTHQDLDAGYCSTSSVADKGHFVVYTADQRRF 60

Query: 55  TVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVKALL 114
            +P+ YL+  +F EL  MSE EFGLPSDGPITLPCDS F +Y++ LV+  + +DL KALL
Sbjct: 61  MIPIVYLNSKIFRELFEMSEAEFGLPSDGPITLPCDSFFMEYIIFLVQRGVAKDLEKALL 120

Query: 115 TSLS 118
           TS++
Sbjct: 121 TSVA 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2013608	141	AT1G29450 "AT1G29450" [Arabido	0.781	0.787	0.558	1.3e-27
TAIR|locus:2013593	141	AT1G29430 "AT1G29430" [Arabido	0.781	0.787	0.553	4.5e-27
TAIR|locus:2013598	141	SAUR63 "AT1G29440" [Arabidopsi	0.781	0.787	0.544	1.5e-26
TAIR|locus:2013703	143	SAUR68 "AT1G29510" [Arabidopsi	0.781	0.776	0.535	5.2e-26
TAIR|locus:2013753	141	AT1G29420 "AT1G29420" [Arabido	0.781	0.787	0.535	6.6e-26
TAIR|locus:2180270	142	SAUR75 "AT5G27780" [Arabidopsi	0.781	0.781	0.539	1.1e-25
TAIR|locus:2013698	135	AT1G29500 "AT1G29500" [Arabido	0.767	0.807	0.522	2.2e-25
TAIR|locus:2013653	102	AT1G29490 "AT1G29490" [Arabido	0.697	0.970	0.56	6.8e-24
TAIR|locus:2013618	148	AT1G29460 "AT1G29460" [Arabido	0.781	0.75	0.495	1.1e-23
TAIR|locus:2199819	123	AT1G76190 "AT1G76190" [Arabido	0.478	0.552	0.426	2.8e-15

TAIR|locus:2013608 AT1G29450 "AT1G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 62/111 (55%), Positives = 80/111 (72%)

Query:     1 MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTDNTRFTVPLEY 60
             M+N+ +L+++A KWQ+  A  RKRISF RS +   S+ A KG FVVYTTD+TRF  PL Y
Sbjct:     1 MMNTKKLIKMAKKWQQRAALHRKRISFQRSSSATSSTAAEKGCFVVYTTDSTRFAFPLSY 60

Query:    61 LSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVK 111
             LS SVF ELL++SEEEFGLP+ GPIT P DS F +Y++ LV+  +  D  K
Sbjct:    61 LSNSVFQELLKISEEEFGLPTGGPITSPFDSVFLEYLIKLVQRRMDADTEK 111

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013593 AT1G29430 "AT1G29430" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 62/112 (55%), Positives = 81/112 (72%)

Query:     1 MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVA-NKGHFVVYTTDNTRFTVPLE 59
             MIN+ +L++LA KWQ+  A KRKRISF RS  T  S  A  KG FVVYT D  RF+ PL 
Sbjct:     2 MINAKKLMKLAKKWQQRAALKRKRISFQRSSITTSSQTAVEKGCFVVYTADKIRFSFPLS 61

Query:    60 YLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVK 111
             YLS ++  ELL++SEEEFGLP++GPITLP DS F +Y+++L++  + ED  K
Sbjct:    62 YLSNTIVQELLKISEEEFGLPTEGPITLPFDSAFLEYLINLIQRRMDEDTEK 113

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013598 SAUR63 "AT1G29440" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 61/112 (54%), Positives = 79/112 (70%)

Query:     1 MINSIRLVQLASKWQKIVATKRKRISFPRS-VATQKSSVANKGHFVVYTTDNTRFTVPLE 59
             MIN+ +L+++A KWQ+  A  RKRISF RS V T  SS   KG FVVYT D  RF  P+ 
Sbjct:     1 MINAKKLMKMAKKWQQRAALHRKRISFQRSSVFTSSSSTVEKGCFVVYTADKIRFAFPIS 60

Query:    60 YLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVK 111
             YLS SV  ELL++SEE+FGLP++GPITLP DS F +Y++ L++  + ED  K
Sbjct:    61 YLSNSVVQELLKISEEDFGLPTEGPITLPFDSAFLEYLVKLIQRRMDEDTEK 112

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009926 "auxin polar transport" evidence=IDA

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2013703 SAUR68 "AT1G29510" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 60/112 (53%), Positives = 78/112 (69%)

Query:     1 MINSIRLVQLASKWQKIVATKRKRISFPRS-VATQKSSVANKGHFVVYTTDNTRFTVPLE 59
             MIN+ +L+++A KWQ+  A  RKRISF RS V T  SS   KG FVVYT D  RF  P+ 
Sbjct:     2 MINAKKLMKMAKKWQQRAALHRKRISFQRSNVFTSSSSTVEKGCFVVYTADKIRFAFPIS 61

Query:    60 YLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVK 111
             YLS S+  ELL++SEEEFGLP++GPITLP DS F +Y++ L++  +  D  K
Sbjct:    62 YLSNSIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDGDTEK 113

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013753 AT1G29420 "AT1G29420" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/112 (53%), Positives = 80/112 (71%)

Query:     1 MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVA-NKGHFVVYTTDNTRFTVPLE 59
             M+N+ +L+++A KWQ+  A +RKRISF RS  T  SS A  KG FVVYT+D  RF  P+ 
Sbjct:     1 MMNTKKLLKMAKKWQQRAALRRKRISFHRSTDTTSSSTAAEKGCFVVYTSDRIRFAFPIS 60

Query:    60 YLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVK 111
             YLS SV  ELL++SEEEFG+P++GPITLP DS F +Y++ LV+  +  D  K
Sbjct:    61 YLSNSVIQELLKISEEEFGIPTEGPITLPFDSVFLEYLIRLVQRRMDGDTEK 112

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180270 SAUR75 "AT5G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 61/113 (53%), Positives = 78/113 (69%)

Query:     1 MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSS--VANKGHFVVYTTDNTRFTVPL 58
             MIN+  L++LA  WQ+  A KRKRISF RS  T  SS     KG FVVYT D  RF+ PL
Sbjct:     2 MINAKTLMKLAKTWQQRAALKRKRISFQRSSITTTSSQTTVEKGCFVVYTADKIRFSFPL 61

Query:    59 EYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVK 111
              YLS ++  ELL++SEEEFGLP++GPITLP DS F +Y++ L++  + ED  K
Sbjct:    62 SYLSNTIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDEDTEK 114

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013698 AT1G29500 "AT1G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 58/111 (52%), Positives = 77/111 (69%)

Query:     1 MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTDNTRFTVPLEY 60
             M+N+ +L+++  KWQ+  A  RKRISF R   + +S+   KG FVVYT DNTRF  P+ Y
Sbjct:     1 MMNTKKLIKMFRKWQQRAALHRKRISFQRP--STRSTTVEKGCFVVYTADNTRFAFPISY 58

Query:    61 LSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVK 111
             LS SVF E+L +SEEEFGLP+ GPITLP DS F +Y++ L+K  +  D  K
Sbjct:    59 LSNSVFQEILEISEEEFGLPTGGPITLPFDSVFLEYLIKLIKRRMDGDTEK 109

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2013653 AT1G29490 "AT1G29490" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 56/100 (56%), Positives = 73/100 (73%)

Query:     1 MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVA-NKGHFVVYTTDNTRFTVPLE 59
             M+N+ +L+++A KWQ+  A +RKRISF RS +T  SS A  KG FVVYT D  RF  P+ 
Sbjct:     1 MMNTKKLMKMAKKWQQRAALRRKRISFQRSNSTTSSSSAVEKGCFVVYTADQVRFAFPIS 60

Query:    60 YLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMS 99
             YLS SV  ELL++SEEEFG+P++GPITLP DS  F + +S
Sbjct:    61 YLSNSVIQELLKISEEEFGIPTEGPITLPFDSIRFSWSIS 100

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013618 AT1G29460 "AT1G29460" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 59/119 (49%), Positives = 76/119 (63%)

Query:     1 MINSIRLVQLASKWQKIVATKRKRISFPRSVAT--------QKSSVANKGHFVVYTTDNT 52
             MIN+ +L+++A KWQ+  A KRKRISF RS  T          S+   KG FVVYT D  
Sbjct:     1 MINTKKLLKMAKKWQQRAALKRKRISFQRSTTTTTTTTTTTSSSTAVEKGCFVVYTVDKI 60

Query:    53 RFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGCIPEDLVK 111
             RF  PL YL+ SVF ELL++SEEEFGL + GPITLP DS F +Y++  ++  +  D  K
Sbjct:    61 RFAFPLSYLNNSVFEELLKISEEEFGLRAGGPITLPFDSVFLEYLIKFIERRMDGDTEK 119

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2199819 AT1G76190 "AT1G76190" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
 Identities = 29/68 (42%), Positives = 45/68 (66%)

Query:    41 KGHFVVYTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSL 100
             KGHF VYT +  RF +PL+YL+  +   LL+M+E+EFG   DGP+ +PCD +   +++ L
Sbjct:    23 KGHFAVYTNEGKRFVLPLDYLNHPMLQVLLQMAEDEFGTTIDGPLKVPCDGSLMDHIIML 82

Query:   101 VKGCIPED 108
             V+  +  D
Sbjct:    83 VRRSMSHD 90

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-31
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	1e-14
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	4e-08
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-05

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  107 bits (270), Expect = 1e-31
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 5/103 (4%)

Query: 1   MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTDNT-RFTVPLE 59
           M + ++    A KW    A+ R R S  +S     S+   KGHF VY  + T RF VP+ 
Sbjct: 1   MASRLKKASSAKKWILSAASGRSRGSSSKS----SSADVPKGHFAVYVGEETRRFVVPIS 56

Query: 60  YLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVK 102
           YL+  +F ELL  +EEEFG   DG +T+PCD   F++++ +++
Sbjct: 57  YLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 41  KGHFVVYTTDN-TRFTVPLEYLSRSVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMS 99
           KGHF VY  +N +R+ VP+ +L+   F  LL+ +EEEFG   D  +T+PC+   F+ + S
Sbjct: 42  KGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTS 101

Query: 100 LVK 102
           +++
Sbjct: 102 MIR 104

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 48.2 bits (114), Expect = 4e-08
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 19  ATKRKRISFPRSVATQKSSVANKGHFVVYT---TDNTRFTVPLEYLSRSVFIELLRMSEE 75
           + + K  S   S +T  S +  KGH  VY     +  RF VP+ YL+  +F E L  +EE
Sbjct: 19  SMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEE 78

Query: 76  EFGL-PSDGPITLPCDSTFFKYVMS 99
           E G   S G +T+PC    F ++++
Sbjct: 79  ECGFHHSMGGLTIPCREESFLHLIT 103

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 32 ATQKSSVANKGHFVVYT-----TDNTRFTVPLEYLSRSVFIELLRMSEEEFGLPSD-GPI 85
          ++  S    KGH  VY       +  RF VP+ +L+   F E L  +EEEFG     G +
Sbjct: 28 SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGL 87

Query: 86 TLPCDSTFF 94
          T+PC    F
Sbjct: 88 TIPCREEVF 96

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	99.97
PLN03219	108	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	84.47
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	81.82
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	80.47
PRK02315	233	adaptor protein; Provisional	80.13

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=3.8e-38  Score=229.41  Aligned_cols=99  Identities=40%  Similarity=0.738  Sum_probs=88.4

Q ss_pred             CcchHHHHHHHHHHhhhhhccccccccCccccccCCcCCCCCeEEEEecC-CeeeeeecccCCcHHHHHHHHhhhhhcCC
Q 044019            1 MINSIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTD-NTRFTVPLEYLSRSVFIELLRMSEEEFGL   79 (142)
Q Consensus         1 m~~~kkL~~~~kKWq~~a~~~r~~~s~~~~~~~~~~~~vpkG~~~VyVGe-~~RfvVp~~yL~hp~F~~LL~~seeEfG~   79 (142)
                      ||+.+|....++||++.++..+++.+.....   +...+|+||||||||+ ++||+||++|||||+|++||++|+|||||
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~---~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~   77 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSS---SESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGF   77 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhccccccccccc---ccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCc
Confidence            9999999999999999887766544433222   2378999999999998 89999999999999999999999999999


Q ss_pred             CCCCCeeecCcHHHHHHHHHHHh
Q 044019           80 PSDGPITLPCDSTFFKYVMSLVK  102 (142)
Q Consensus        80 ~~~G~L~iPC~~~~Fe~vl~~l~  102 (142)
                      +++|+|+||||+++||+++|+|+
T Consensus        78 ~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   78 DQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CCCCcEEeeCCHHHHHHHHHHhC
Confidence            99999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=2.9e-36  Score=221.49  Aligned_cols=91  Identities=29%  Similarity=0.575  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHhhhhhccccccccCccccccCCcCCCCCeEEEEecC-CeeeeeecccCCcHHHHHHHHhhhhhcCCCCC
Q 044019            4 SIRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTD-NTRFTVPLEYLSRSVFIELLRMSEEEFGLPSD   82 (142)
Q Consensus         4 ~kkL~~~~kKWq~~a~~~r~~~s~~~~~~~~~~~~vpkG~~~VyVGe-~~RfvVp~~yL~hp~F~~LL~~seeEfG~~~~   82 (142)
                      .++|++|+|||++++..+.    +   ..+..+.++|+||||||||+ ++||+||++|||||+|++||++|||||||+++
T Consensus        12 ~~~~kq~l~r~~s~~~~~~----~---~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~   84 (104)
T PLN03090         12 TAMLKQILKRCSSLGKKQG----Y---DEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHD   84 (104)
T ss_pred             HHHHHHHHHHHHHhcccCC----c---ccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence            4678999999998854321    1   11123668999999999997 68999999999999999999999999999999


Q ss_pred             CCeeecCcHHHHHHHHHHH
Q 044019           83 GPITLPCDSTFFKYVMSLV  101 (142)
Q Consensus        83 G~L~iPC~~~~Fe~vl~~l  101 (142)
                      |+|+||||+++|++++|+|
T Consensus        85 G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         85 MGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CcEEEeCCHHHHHHHHHHh
Confidence            9999999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=7e-32  Score=198.30  Aligned_cols=86  Identities=33%  Similarity=0.580  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhhhhhccccccccCccccccCCcCCCCCeEEEEecC-----CeeeeeecccCCcHHHHHHHHhhhhhcCC
Q 044019            5 IRLVQLASKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTD-----NTRFTVPLEYLSRSVFIELLRMSEEEFGL   79 (142)
Q Consensus         5 kkL~~~~kKWq~~a~~~r~~~s~~~~~~~~~~~~vpkG~~~VyVGe-----~~RfvVp~~yL~hp~F~~LL~~seeEfG~   79 (142)
                      .++++++|+.. ++.  +.+.+      ...+.+|||||||||||+     ++||+||++|||||+|++||++|||||||
T Consensus        10 ~~~k~~~~~~~-~~~--~~~~~------~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf   80 (105)
T PLN03220         10 NATKQILKLNS-LAN--RNRTS------SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF   80 (105)
T ss_pred             HHHHHHHHHHh-hcc--ccccc------ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            46778888776 432  21111      112467999999999996     69999999999999999999999999999


Q ss_pred             CC-CCCeeecCcHHHHHHHHH
Q 044019           80 PS-DGPITLPCDSTFFKYVMS   99 (142)
Q Consensus        80 ~~-~G~L~iPC~~~~Fe~vl~   99 (142)
                      ++ +|+|+||||++.|++++.
T Consensus        81 ~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         81 NHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             CCCCCCEEeeCCHHHHHHHHH
Confidence            98 699999999999999985

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=1.9e-31  Score=196.86  Aligned_cols=89  Identities=31%  Similarity=0.562  Sum_probs=71.5

Q ss_pred             HHHhhhhhccccccccCccccccCCcCCCCCeEEEEecC---CeeeeeecccCCcHHHHHHHHhhhhhcCCCC-CCCeee
Q 044019           12 SKWQKIVATKRKRISFPRSVATQKSSVANKGHFVVYTTD---NTRFTVPLEYLSRSVFIELLRMSEEEFGLPS-DGPITL   87 (142)
Q Consensus        12 kKWq~~a~~~r~~~s~~~~~~~~~~~~vpkG~~~VyVGe---~~RfvVp~~yL~hp~F~~LL~~seeEfG~~~-~G~L~i   87 (142)
                      +-||..+-.+|+-.+.++. ..+.+..+||||||||||+   ++||+||++|||||+|++||++|||||||++ +|+|+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~-~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~I   91 (108)
T PLN03219         13 QIFKSQSMRNKNGSSSPSS-STTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTI   91 (108)
T ss_pred             HHHHHHHHhcccCCCCCcc-CCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEE
Confidence            4566555445443332222 2223678999999999996   7999999999999999999999999999996 699999


Q ss_pred             cCcHHHHHHHHHHH
Q 044019           88 PCDSTFFKYVMSLV  101 (142)
Q Consensus        88 PC~~~~Fe~vl~~l  101 (142)
                      |||++.|++++..-
T Consensus        92 PCd~~~F~~ll~~~  105 (108)
T PLN03219         92 PCREESFLHLITSH  105 (108)
T ss_pred             eCCHHHHHHHHHhh
Confidence            99999999998753

>PRK02899 adaptor protein; Provisional

Probab=84.47  E-value=0.81  Score=36.86  Aligned_cols=25  Identities=28%  Similarity=0.777  Sum_probs=21.5

Q ss_pred             cHHHHHHHHhhhhhcCCCCCCCeee
Q 044019           63 RSVFIELLRMSEEEFGLPSDGPITL   87 (142)
Q Consensus        63 hp~F~~LL~~seeEfG~~~~G~L~i   87 (142)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3578888999999999999999864

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=81.82  E-value=5.6  Score=26.22  Aligned_cols=53  Identities=26%  Similarity=0.394  Sum_probs=38.6

Q ss_pred             EecCCeeeeeecccCCcHHHHHHHHhhhhhcCCC----------CCCC-eeecCcHHHHHHHHHHHhc
Q 044019           47 YTTDNTRFTVPLEYLSRSVFIELLRMSEEEFGLP----------SDGP-ITLPCDSTFFKYVMSLVKG  103 (142)
Q Consensus        47 yVGe~~RfvVp~~yL~hp~F~~LL~~seeEfG~~----------~~G~-L~iPC~~~~Fe~vl~~l~~  103 (142)
                      |-|+-+||.+|.   .++.|.+|..+.++.|++.          .+|- ++|.++ ..|+.++...++
T Consensus         7 ~~~~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~~   70 (81)
T cd05992           7 YGGEIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEARR   70 (81)
T ss_pred             ecCCCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHhh
Confidence            446789999998   8889999999999888874          2444 456555 466666666654

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=80.47  E-value=0.82  Score=31.40  Aligned_cols=54  Identities=19%  Similarity=0.281  Sum_probs=40.6

Q ss_pred             CeeeeeecccCC-c--HHHHHHHHhhhhhcCCCCCCCeeecCcHHHHHHHHHHHhcc
Q 044019           51 NTRFTVPLEYLS-R--SVFIELLRMSEEEFGLPSDGPITLPCDSTFFKYVMSLVKGC  104 (142)
Q Consensus        51 ~~RfvVp~~yL~-h--p~F~~LL~~seeEfG~~~~G~L~iPC~~~~Fe~vl~~l~~~  104 (142)
                      +++|.++.+-|. +  ..|..|++.......-+.+|.+-|-++...|++|+.-++.+
T Consensus         7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            578888887776 4  47888888653222224679999999999999999999983

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02315 adaptor protein; Provisional

Probab=80.13  E-value=1.4  Score=36.31  Aligned_cols=25  Identities=20%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             cHHHHHHHHhhhhhcCCCCCCCeee
Q 044019           63 RSVFIELLRMSEEEFGLPSDGPITL   87 (142)
Q Consensus        63 hp~F~~LL~~seeEfG~~~~G~L~i   87 (142)
                      +-+|.++|+++..|+||..+|||++
T Consensus        38 e~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         38 EEFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            3589999999999999999999864

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00