Citrus Sinensis ID: 044021

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MELDSSFRDDNPFISSLFSDNLFKSDLGNGFSSLENPSSKVSPLFQILTILIDLPSKDPQKDPPLGISTMSFDPLKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDYSQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQENYIKNVTARKNNKSNKGINAAPDQDNSANFDAAVVNADNNMMMMPTSSQSQLGITSNFASSLVDQWPQVPVYGHHIEAAIGRLSYENGGGYNFGSSVLDEMPSAGSTVESNFEFELALEIDSNYMPEEVKREMELMEMAYKGL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccHHHHHHHHccccccccccccccccccccccccccEEccccccccccccccccccccccHccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
meldssfrddnpfisslfsdnlfksdlgngfsslenpsskvsplFQILTILidlpskdpqkdpplgistmsfdplkgysngflgtesaytatplvlnstndvlhgperrgfwdysqnfsahpkpetpnfqpilmnfqdyesssaklpdevscvtgenaynqdqkrnkripvkrerklpkknniikgqwtpqEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNhlkpdikkeawSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQENYIKNVTARknnksnkginaapdqdnsanfDAAVvnadnnmmmmptssqsqlgitsnfasslvdqwpqvpvyghHIEAAIGRlsyengggynfgssvldempsagstvesnFEFELALeidsnympeEVKREMELMEMAYKGL
Flexible Loop (DISEMBL)
meldssfrddnpfISSLFSDNLFKSDLGNGFSSLENPSSKVSPLFQILTILIDLPSKDPQKDPPLGISTMSFDPLKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDYSQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVtgenaynqdqkrnkripvkrerklpkknniikgqwtpqedRMLIRLVAQHGTKKWSVIAKAmtgrvgkqcrerWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIgrtentiknhwnatkrrqqskrntrkqlqenyiknvtarknnksnkginaapdqdnsanFDAAVVNADNNMMMMPTSSQSQLGITSNFASSLVDQWPQVPVYGHHIEAAIGRLSYENGGGYNFGSSVLDEMPSAGSTVESNFEFELaleidsnympeEVKREMELMEMAYKGL
Low Complexity Region (SEG)
MELDSSFRDDNPFISSLFSDNLFKSDLGNGFSSLENPSSKVSPLFQILTILIDLPSKDPQKDPPLGISTMSFDPLKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDYSQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQENYIKNVTARKNNKSNKGINAAPDQDNSanfdaavvnadnnmmmmPTSSQSQLGITSNFASSLVDQWPQVPVYGHHIEAAIGRLSYENGGGYNFGSSVLDEMPSAGSTVESNFEFELALEIDSNYMPEEVKREMELMEMAYKGL
Disordered region (IsUnstruct)
******************************************PLFQILTILIDL*****************FDPLKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDYSQ******************************************************************IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHW************************************************************************ITSNFASSLVDQWPQVPVYGHHIEAAIGRLSYENGGGYNFGSSVL*************FEFELALEI***********************
Disordered Region (DISOPRED)
*********************LFKSDL********************LTILIDL****************SFDPLKGYSNGFLGTESAYTA***********************************************************SCVTG******************************GQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATK**************************************************************************************************************************************************EMELMEMAY***
Disordered Region (DISEMBL)
********DDNPFISSLFSDNLFKSDLGNGFSSLENPSSKVSPLFQILTILIDLPSKDPQKDPPLGISTMSFDPLKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDYSQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWN*************KQLQENYIKNVTARKNNKSNKGINAAPDQDNSANFDAAVVNADNNMMMMPTSSQSQLGITSNFASSLVDQWPQVPVYGHHIEAAIGRLSYENGGGYNFGSSVLDEMPSAGSTVESNFEFELALEIDSNYMPEEVKREMELMEMAYKGL
Disordered Region (DISPRO)
**LDSSFRDDNPFISSLFSDNLFKSDLGNGFSSLENPSSKVSPLFQILTILIDLPSKDPQKDPPLGISTMSFDPLKGYSNGFLGTESAYTATPLV****************************************FQDYESSSAKLPDEVSCVTGENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKR*******************************************************************************YGHH*E****R***************************************SNYMPEEVKREMELMEMAYKGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELDSSFRDDNPFISSLFSDNLFKSDLGNGFSSLENPSSKVSPLFQILTILIDLPSKDPQKDPPLGISTMSFDPLKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDYSQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQENYIKNVTARKNNKSNKGINAAPDQDNSANFDAAVVNADNNMMMMPTSSQSQLGITSNFASSLVDQWPQVPVYGHHIEAAIGRLSYENGGGYNFGSSVLDEMPSAGSTVESNFEFELALEIDSNYMPEEVKREMELMEMAYKGL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
Q9S7L2	427	Transcription factor MYB9	no	no	0.386	0.398	0.523	5e-51
P10242	640	Transcriptional activator	no	no	0.231	0.159	0.640	9e-38
P46200	640	Transcriptional activator	yes	no	0.231	0.159	0.640	1e-37
P06876	636	Transcriptional activator	no	no	0.231	0.160	0.640	1e-37
P01103	641	Transcriptional activator	yes	no	0.231	0.159	0.640	2e-37
Q08759	624	Transcriptional activator	N/A	no	0.254	0.179	0.575	2e-37
Q05935	728	Myb-related protein A OS=	N/A	no	0.309	0.186	0.503	4e-37
P10243	752	Myb-related protein A OS=	no	no	0.234	0.136	0.621	5e-37
P51960	751	Myb-related protein A OS=	no	no	0.234	0.137	0.621	5e-37
P52551	743	Myb-related protein B OS=	N/A	no	0.236	0.139	0.596	1e-36

>sp|Q9S7L2|MYB98_ARATH Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1

 Score =  202 bits (513), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 102/195 (52%), Positives = 134/195 (68%), Gaps = 25/195 (12%)

Query: 124 PETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQKRNKRIPVKRER-------- 175
           P T  F+P  MNF         +PDE+SCV+ +N   +    NK  P    +        
Sbjct: 156 PPTETFKP--MNFV--------MPDEISCVSADNDCYRATSFNKTKPFLTRKLSSSSSSS 205

Query: 176 --KLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKP 233
             K  KK+ ++KGQWT +EDR+LI+LV ++G +KWS IA+ + GR+GKQCRERW+NHL+P
Sbjct: 206 SWKETKKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRP 265

Query: 234 DIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRK 293
           DIKKE WSEEED +LI+ HKE+GN+WAEIA+RL GRTEN+IKNHWNATKRRQ SKR  R 
Sbjct: 266 DIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRS 325

Query: 294 Q-----LQENYIKNV 303
           +     L ++YIK++
Sbjct: 326 KYPRPSLLQDYIKSL 340

Transcription factor. Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte. Involved in pollen tube guidance to the micropyle.
Arabidopsis thaliana (taxid: 3702)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  158 bits (399), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 86/103 (83%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  158 bits (399), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 86/103 (83%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  158 bits (399), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 86/103 (83%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 86/103 (83%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Gallus gallus (taxid: 9031)

>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 92/120 (76%), Gaps = 8/120 (6%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 87  LIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 146

Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQENYIKN 302
           EED  + +AHK +GNRWAEIA+ L GRT+N IKNHWN+T R        RK+ QE Y++N
Sbjct: 147 EEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR--------RKEEQEGYLQN 198

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Xenopus laevis (taxid: 8355)

>sp|Q05935|MYBA_XENLA Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 102/145 (70%), Gaps = 9/145 (6%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           ++KG WT +ED+ +I LV ++G KKWS+IAK + GR+GKQCRERW+NHL PD+KK +W+E
Sbjct: 84  LVKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKGRIGKQCRERWHNHLNPDVKKSSWTE 143

Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQENYIKN 302
           EED I+  AHK +GNRWAEIA+ L GRT+N+IKNHWN+T +        RK  QE Y+++
Sbjct: 144 EEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMK--------RKVEQEGYLQD 195

Query: 303 VT-ARKNNKSNKGINAAPDQDNSAN 326
           +    + +K      AAP+   + N
Sbjct: 196 LMNCDRPSKLQAKSCAAPNHLQAQN 220

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Xenopus laevis (taxid: 8355)

>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2

 Score =  155 bits (392), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 87/103 (84%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I LV ++G K+WS+IAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 85  LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 144

Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EED I+ +AHK +GNRWAEIA+ L GRT+N+IKNHWN+T RR+
Sbjct: 145 EEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Homo sapiens (taxid: 9606)

>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2

 Score =  155 bits (392), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 87/103 (84%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I LV ++G K+WS+IAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 85  LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 144

Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EED I+ +AHK +GNRWAEIA+ L GRT+N+IKNHWN+T RR+
Sbjct: 145 EEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Mus musculus (taxid: 10090)

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 86/104 (82%)

Query: 182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWS 241
           +++KG WT +ED  +I LV ++GTK W++IAK + GR+GKQCRERW+NHL P++KK +W+
Sbjct: 80  DLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWT 139

Query: 242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EEED I+ QAHK +GNRWAEIA+ L GRT+N +KNHWN+T +R+
Sbjct: 140 EEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
224060115	450	predicted protein [Populus trichocarpa]	0.918	0.897	0.378	8e-68
297818378	433	MYB118 [Arabidopsis lyrata subsp. lyrata	0.718	0.729	0.418	2e-56
225457011	432	PREDICTED: transcription factor MYB98 [V	0.920	0.937	0.346	3e-56
357461941	447	Myb [Medicago truncatula] gi|355490300|g	0.627	0.617	0.432	5e-55
15375297	437	putative transcription factor MYB118 [Ar	0.659	0.663	0.404	5e-55
116831242	438	unknown [Arabidopsis thaliana]	0.659	0.662	0.404	9e-55
30688925	437	myb domain protein 118 [Arabidopsis thal	0.659	0.663	0.404	9e-55
255540645	366	myb119, putative [Ricinus communis] gi|2	0.65	0.781	0.409	2e-54
45357116	437	MYB transcription factor [Arabidopsis th	0.659	0.663	0.404	2e-54
255560862	316	r2r3-myb transcription factor, putative	0.629	0.876	0.423	2e-54

>gi|224060115|ref|XP_002300044.1| predicted protein [Populus trichocarpa] gi|222847302|gb|EEE84849.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (674), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 183/484 (37%), Positives = 266/484 (54%), Gaps = 80/484 (16%)

Query: 1   MELDSSFRDDNPFISSLFSDNLFKSDLGNGFSSLENPSSK-----------------VSP 43
           MEL++   D+ PF+SSL S+     +  N FS  E  SSK                 + P
Sbjct: 1   MELNTMLIDEFPFLSSLLSEYNLNPEGTNDFSLEEALSSKGLFYNFHHLGYGHPTNIIPP 60

Query: 44  LFQILTILIDLPSKDPQKDPPLGISTMSFDP--LKGYSNGFLGTE-SAYTAT--PLVLNS 98
              +    I+  S++P      GIS    DP  L   ++GF   + +AYT T  PL+   
Sbjct: 61  YLDLDHFTIEGSSQNPFS----GISGTCIDPARLDSLASGFSSHDLNAYTPTVVPLLPAG 116

Query: 99  TND-VLHGPERRGFWDY-------SQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEV 150
             D +LHG +R    D+       +++ +     E   F+ I    +   +++    DE 
Sbjct: 117 CGDRLLHGLQRGSVRDHDYQKISGARSLNQKEMKEQRGFEEI---GRTRTANNGVSTDEA 173

Query: 151 SCVTGENAYNQDQ----KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTK 206
           SCV+ E++ +  Q    ++ K++ ++++ K+ KK+ +IKGQWTPQEDR+L++ V Q+G K
Sbjct: 174 SCVSTEDSKHHKQVDHHRKAKKLLLEKDSKVHKKSQVIKGQWTPQEDRLLVQSVKQYGIK 233

Query: 207 KWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRL 266
           KWS IAK + GRVGKQCRERW+NHL+PDIKK+AWSEEED +LI AH+E+GNRWAEIA+RL
Sbjct: 234 KWSQIAKMLEGRVGKQCRERWHNHLRPDIKKDAWSEEEDELLINAHREIGNRWAEIAKRL 293

Query: 267 IGRTENTIKNHWNATKRRQQSKRNTRKQLQ------ENYIKNVTARKNNKSNKGINAAPD 320
            GRTENTIKNHWNATKRRQ S+R + K L       ++YI  VT+           ++  
Sbjct: 294 PGRTENTIKNHWNATKRRQFSRRESGKDLDSKSTLLQSYIMMVTS-----------SSST 342

Query: 321 QDNSANFDAAVVNADN-NMMMMPTSSQSQLGITSNFASSLVDQWPQVPVYGHHIEAAIGR 379
           Q+N+       VN+++ N    P SS + L               ++P YGH       +
Sbjct: 343 QENNEEEKTDDVNSNSPNQNESPGSSSTDL---------------EIP-YGHGHNNEASK 386

Query: 380 LSYEN---GGGYNFGSSVLDEMPSAGSTVESNFEFELALEIDSNYMPEEVKREMELMEMA 436
           LS++       Y F  S L+EMP +    ESN EFE++  +DS     EVK+EM+L+EM 
Sbjct: 387 LSFDTNLFNDSYGF-MSFLEEMPCSCVVDESNMEFEIS-GLDSLMKGAEVKKEMDLLEMI 444

Query: 437 YKGL 440
            +G+
Sbjct: 445 TQGI 448

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818378|ref|XP_002877072.1| MYB118 [Arabidopsis lyrata subsp. lyrata] gi|297322910|gb|EFH53331.1| MYB118 [Arabidopsis lyrata subsp. lyrata]

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/358 (41%), Positives = 204/358 (56%), Gaps = 42/358 (11%)

Query: 1   MELDSSFRDDNPFISS-LFSDNL----FKSDLGNGFSSLENPSSKVSPLFQILTILIDLP 55
           ME +S  +   P++++ ++ D+L    F   L + FS + N   K S     +    ++P
Sbjct: 1   MEFESVIKMHYPYLAAVMYDDSLALKDFHPSLTDDFSCVHNVHHKPS-----IPHTNEIP 55

Query: 56  SKDPQKDPPLGISTMSFDP-LKGYSN--GFLGTESAYTATPLVLNSTNDVLHGPERRGFW 112
           SK+  +       T +F+    G SN  GF G   AYT +P +  S  +V H P     W
Sbjct: 56  SKETIRGITPSPCTEAFEAYFHGTSNDQGFFGM--AYTTSPTIDES--NVSHVPHDNTMW 111

Query: 113 DYSQN-FSAHPKPETPNF-----QPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQKRN 166
           +  Q+  S      T N      +PIL   +D    + +  ++V   T      Q  K+N
Sbjct: 112 ENDQSQGSVFGTESTFNLAMVDSKPILSANED-TIMNRRQNNQVMIRT-----EQILKKN 165

Query: 167 KRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRER 226
           KR+ ++R  K  KK +IIKGQWTP+ED++L++LV  HGTKKWS IAK + GRVGKQCRER
Sbjct: 166 KRLQMRRICKPAKKASIIKGQWTPEEDKLLVQLVELHGTKKWSQIAKMLQGRVGKQCRER 225

Query: 227 WYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ 286
           W+NHL+PDIKK+ W+EEEDMILI+AHKE+GNRWAEIAR L GRTENTIKNHWNATKRRQ 
Sbjct: 226 WHNHLRPDIKKDVWTEEEDMILIKAHKEIGNRWAEIARNLPGRTENTIKNHWNATKRRQH 285

Query: 287 SKRNTRKQ---------LQENYIKNVTARKNN--KSNKGINAAPD--QDNSANFDAAV 331
           S+R   K            +NYI++VT  ++    +N   N  P   +D   N   AV
Sbjct: 286 SRRTKGKDEISLALGSNTLQNYIRSVTYNEDTFMTANSNANIGPKNMRDKGKNVMVAV 343

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457011|ref|XP_002279033.1| PREDICTED: transcription factor MYB98 [Vitis vinifera] gi|297733769|emb|CBI15016.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 236/456 (51%), Gaps = 51/456 (11%)

Query: 1   MELDSSFRDDNPFISSLFSDNLFKSDLGNGFSSLENPSSKVSPLFQILTIL-IDLPSKDP 59
           M+ D  ++++      L  +N  KS +G+G  SLE  SSK    FQ    L    P+   
Sbjct: 1   MDFDRKYKENLGSQPMLLPENYLKSYMGDGAFSLEACSSKA--FFQDFHHLDHQFPTNAS 58

Query: 60  QKDPPLGISTMSFDPLKGYSNGFLGTESAYTATPLVLN-STNDVLHGPERRGFWDYSQNF 118
            K    G+ T   DP   ++ G       Y   P   N    +        G+  +    
Sbjct: 59  SKTLQFGVQTACLDPFDSFTYGSGMNLDVYELKPYAENVGVMENFQSNNGGGYLLHHHQR 118

Query: 119 SAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAY----NQDQKRNKRIPV-KR 173
           +A       +   +  N Q+ +  +  +P+EV C+  EN+     +    +N   P  K+
Sbjct: 119 AAAADMMGLDRGRVAFNCQEIKPVNFVIPEEV-CIAAENSLYKKISMSTAKNGASPAAKK 177

Query: 174 ERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKP 233
             K  KK +++KGQWT +EDR+LI+LV Q+G +KWS+IA+ + GR+GKQCRERW+NHL+P
Sbjct: 178 TYKGRKKTHVVKGQWTIEEDRLLIQLVEQYGVRKWSLIAQMLNGRIGKQCRERWHNHLRP 237

Query: 234 DIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRK 293
           +IKK+ WSEEED ILIQAH E+GN+WAEIA+RL GRTEN+IKNHWNATKRRQ S+R  R 
Sbjct: 238 NIKKDIWSEEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQLSRRKCRS 297

Query: 294 Q------LQENYIKNVTARKNNKSNKGINAAPDQDNSANFDAAVVNADNNMMMMPTSSQS 347
           +      L +NYIK++     N  ++ +      D   N  A    A NN ++ P  ++ 
Sbjct: 298 KYPRQSTLLQNYIKSL-----NLDSRTV------DYQKNPTANNPMAANNTVLRPPMNRP 346

Query: 348 QL-------GITSNFASSLVDQWPQVPVYGHHIEAAIGRLSYENGGGYNFGSSVLDEMPS 400
           ++       G+  NF       + +VP +           S +         S+L+EM S
Sbjct: 347 EISDFCPGDGVVPNF------DYEEVPDFSFDANIFQENCSID---------SLLNEMSS 391

Query: 401 AGSTVESNFEFE-LALEIDSNYMPEEVKREMELMEM 435
           A +  E   E E + L++ S  +  EVK+EM+L+E+
Sbjct: 392 APTGDEKGIEMENMPLDMAS-LLQCEVKKEMDLVEI 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461941|ref|XP_003601252.1| Myb [Medicago truncatula] gi|355490300|gb|AES71503.1| Myb [Medicago truncatula]

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 134/310 (43%), Positives = 185/310 (59%), Gaps = 34/310 (10%)

Query: 146 LPDEVSCVTGENAYNQD--QKRNKRIPV--KRERKLPKKNNIIKGQWTPQEDRMLIRLVA 201
           +PDEVSC++  N Y +    + NK  P   ++  K+ KK N IKGQWT +EDR+L++LV 
Sbjct: 138 VPDEVSCISSVNYYKRVGMNRNNKAYPYASRKPEKVKKKINFIKGQWTVEEDRLLVQLVG 197

Query: 202 QHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAE 261
           +HG +KWS IA+ + GR+GKQCRERW+NHLKPDIKK+ WSEEED ILI+AH+E+GN+WAE
Sbjct: 198 EHGLRKWSHIAENLPGRIGKQCRERWHNHLKPDIKKDIWSEEEDNILIKAHEEIGNKWAE 257

Query: 262 IARRLIGRTENTIKNHWNATKRRQQSKRNTRKQ-----LQENYIKNVTARKNNKSNKGIN 316
           IA+RL GRTEN+IKNHWNATKRRQ SKR  R +     L + YIK++   +N    K   
Sbjct: 258 IAKRLPGRTENSIKNHWNATKRRQYSKRKGRSKYPKGTLLQKYIKSLNLDEN--PPKDYR 315

Query: 317 AAPDQDNSANFDAAVVNADNNMMMMPTSSQSQLGITSNFASSL-VDQWPQVPVYGHHIEA 375
             P    SAN   A+ N  N    + + SQ       N    +    +  VP +      
Sbjct: 316 RKP----SAN---AIKNKTNRSTTISSQSQQTEQFFPNDQCLVPTCDFDDVPDF------ 362

Query: 376 AIGRLSYENGGGYNFGSSVLDEMPSAGS------TVESNFEFELALEIDSNYMPEEVKRE 429
           +     ++NG   +   S+LD+M  A +          + E E+ L+I  + +  EVK+E
Sbjct: 363 SFDENLFQNGCSID---SLLDDMQCAEADQIMEGKKHFDVETEMPLDIMESMLGVEVKKE 419

Query: 430 MELMEMAYKG 439
           M+LMEM + G
Sbjct: 420 MDLMEMVFSG 429

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15375297|gb|AAK25750.2|AF334817_1 putative transcription factor MYB118 [Arabidopsis thaliana]

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 186/331 (56%), Gaps = 41/331 (12%)

Query: 1   MELDSSFRDDNPFISSLFSDNL-----FKSDLGNGFSSLENPSSKVSPLFQILTILIDLP 55
           ME +S F+   P+++++  D+      F   L + FS + N   K S     +    ++P
Sbjct: 1   MEFESVFKMHYPYLAAVIYDDSSTLKDFHPSLTDDFSCVHNVHHKPS-----MPHTYEIP 55

Query: 56  SKDPQKDPPLGISTMSFDP-LKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDY 114
           SK+  +       T +F+    G SN  +    AYT  P +  + + V H       W+ 
Sbjct: 56  SKETIRGITPSPCTEAFEACFHGTSNDHVFFGMAYTTPPTIEPNVSHVSHD---NTMWEN 112

Query: 115 SQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQ----------- 163
            QN       E+       +N    +S+   +P  +     +   N+ Q           
Sbjct: 113 DQNQGFXFGTES------TLNQAMXDSNQFNMPKPLLSANEDTIMNRRQNNQVMIKTEQI 166

Query: 164 -KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQ 222
            K+NKR  ++R  K  KK +IIKGQWTP+ED++L++LV  HGTKKWS IAK + GRVGKQ
Sbjct: 167 KKKNKRFQMRRICKPTKKASIIKGQWTPEEDKLLVQLVDLHGTKKWSQIAKMLQGRVGKQ 226

Query: 223 CRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATK 282
           CRERW+NHL+PDIKK+ W+EEED+ILI+AHKE+GNRWAEIAR+L GRTENTIKNHWNATK
Sbjct: 227 CRERWHNHLRPDIKKDGWTEEEDIILIKAHKEIGNRWAEIARKLPGRTENTIKNHWNATK 286

Query: 283 RRQQSKRNTRKQ---------LQENYIKNVT 304
           RRQ S+R   K            +NYI++VT
Sbjct: 287 RRQHSRRTKGKDEISLSLGSNTLQNYIRSVT 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831242|gb|ABK28575.1| unknown [Arabidopsis thaliana]

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 186/331 (56%), Gaps = 41/331 (12%)

Query: 1   MELDSSFRDDNPFISSLFSDNL-----FKSDLGNGFSSLENPSSKVSPLFQILTILIDLP 55
           ME +S F+   P+++++  D+      F   L + FS + N   K S     +    ++P
Sbjct: 1   MEFESVFKMHYPYLAAVIYDDSSTLKDFHPSLTDDFSCVHNVHHKPS-----MPHTYEIP 55

Query: 56  SKDPQKDPPLGISTMSFDP-LKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDY 114
           SK+  +       T +F+    G SN  +    AYT  P +  + + V H       W+ 
Sbjct: 56  SKETIRGITPSPCTEAFEACFHGTSNDHVFFGMAYTTPPTIEPNVSHVSHD---NTMWEN 112

Query: 115 SQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQ----------- 163
            QN       E+       +N    +S+   +P  +     +   N+ Q           
Sbjct: 113 DQNQGFIFGTES------TLNQAMADSNQFNMPKPLLSANEDTIMNRRQNNQVMIKTEQI 166

Query: 164 -KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQ 222
            K+NKR  ++R  K  KK +IIKGQWTP+ED++L++LV  HGTKKWS IAK + GRVGKQ
Sbjct: 167 KKKNKRFQMRRICKPTKKASIIKGQWTPEEDKLLVQLVDLHGTKKWSQIAKMLQGRVGKQ 226

Query: 223 CRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATK 282
           CRERW+NHL+PDIKK+ W+EEED+ILI+AHKE+GNRWAEIAR+L GRTENTIKNHWNATK
Sbjct: 227 CRERWHNHLRPDIKKDGWTEEEDIILIKAHKEIGNRWAEIARKLPGRTENTIKNHWNATK 286

Query: 283 RRQQSKRNTRKQ---------LQENYIKNVT 304
           RRQ S+R   K            +NYI++VT
Sbjct: 287 RRQHSRRTKGKDEISLSLGSNTLQNYIRSVT 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688925|ref|NP_189416.2| myb domain protein 118 [Arabidopsis thaliana] gi|9294482|dbj|BAB02701.1| probable MYB-like DNA-binding protein [Arabidopsis thaliana] gi|91806493|gb|ABE65974.1| myb family transcription factor [Arabidopsis thaliana] gi|332643842|gb|AEE77363.1| myb domain protein 118 [Arabidopsis thaliana]

 Score =  220 bits (561), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 186/331 (56%), Gaps = 41/331 (12%)

Query: 1   MELDSSFRDDNPFISSLFSDNL-----FKSDLGNGFSSLENPSSKVSPLFQILTILIDLP 55
           ME +S F+   P+++++  D+      F   L + FS + N   K S     +    ++P
Sbjct: 1   MEFESVFKMHYPYLAAVIYDDSSTLKDFHPSLTDDFSCVHNVHHKPS-----MPHTYEIP 55

Query: 56  SKDPQKDPPLGISTMSFDP-LKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDY 114
           SK+  +       T +F+    G SN  +    AYT  P +  + + V H       W+ 
Sbjct: 56  SKETIRGITPSPCTEAFEACFHGTSNDHVFFGMAYTTPPTIEPNVSHVSHD---NTMWEN 112

Query: 115 SQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQ----------- 163
            QN       E+       +N    +S+   +P  +     +   N+ Q           
Sbjct: 113 DQNQGFIFGTES------TLNQAMADSNQFNMPKPLLSANEDTIMNRRQNNQVMIKTEQI 166

Query: 164 -KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQ 222
            K+NKR  ++R  K  KK +IIKGQWTP+ED++L++LV  HGTKKWS IAK + GRVGKQ
Sbjct: 167 KKKNKRFQMRRICKPTKKASIIKGQWTPEEDKLLVQLVDLHGTKKWSQIAKMLQGRVGKQ 226

Query: 223 CRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATK 282
           CRERW+NHL+PDIKK+ W+EEED+ILI+AHKE+GNRWAEIAR+L GRTENTIKNHWNATK
Sbjct: 227 CRERWHNHLRPDIKKDGWTEEEDIILIKAHKEIGNRWAEIARKLPGRTENTIKNHWNATK 286

Query: 283 RRQQSKRNTRKQ---------LQENYIKNVT 304
           RRQ S+R   K            +NYI++VT
Sbjct: 287 RRQHSRRTKGKDEISLSLGSNTLQNYIRSVT 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540645|ref|XP_002511387.1| myb119, putative [Ricinus communis] gi|223550502|gb|EEF51989.1| myb119, putative [Ricinus communis]

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/322 (40%), Positives = 190/322 (59%), Gaps = 36/322 (11%)

Query: 134 MNFQDYESSSAKLPDEVSCVTGENA---YNQDQKRNKRIP--VKRERKLPKKNNIIKGQW 188
           +N Q+ +  S  +PDEVS VT  N     N    +N R+    ++  K  KKNN++KGQW
Sbjct: 55  LNLQEMKPISFVVPDEVSSVTANNHEYPKNVGVNKNNRVSASTRKTWKARKKNNVVKGQW 114

Query: 189 TPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMIL 248
           T  EDR+L +LV Q+G +KWS IA+ + GR+GKQCRERW+NHL+PDIKK+ WSEEED +L
Sbjct: 115 TIDEDRLLSQLVEQYGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDVWSEEEDKVL 174

Query: 249 IQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQ-----LQENYIKNV 303
           I+AH E+GN+WAEIA+RL GRTEN+IKNHWNATKRRQ SKR  R +     L ++YIK++
Sbjct: 175 IKAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQDYIKSL 234

Query: 304 TARKNNKSNKGINAAP----DQDNSANFDAAVVNADNNMMMMPTSSQSQLGITSNFASSL 359
                      ++  P    +Q  S   D A+ +  NN M +  ++Q Q+ +       L
Sbjct: 235 N----------LDPCPGRSYNQGKSCATDHAIASDLNNTMKLAQNNQPQVALEFVQNDRL 284

Query: 360 VDQWPQVPVYGHHIEAAIGRLSYENGGGYNFGSSVLDEMPSAGS----TVESNFEFELAL 415
           V  +    V     +    ++ ++ G  ++   S+LD +P          E +FE  +A+
Sbjct: 285 VPNYVFNEVADFDFDE---KIMFQEGCSFD---SLLDGIPCDHHHNHVVDEKSFEINMAV 338

Query: 416 EIDSN--YMPEEVKREMELMEM 435
           E D     M  EVK+E++L+EM
Sbjct: 339 EDDMTPLMMDFEVKKELDLVEM 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45357116|gb|AAS58517.1| MYB transcription factor [Arabidopsis thaliana]

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 185/331 (55%), Gaps = 41/331 (12%)

Query: 1   MELDSSFRDDNPFISSLFSDNL-----FKSDLGNGFSSLENPSSKVSPLFQILTILIDLP 55
           ME +S F+   P+++++  D+      F   L + FS + N   K S     +    ++P
Sbjct: 1   MEFESVFKMHYPYLAAVIYDDSSTLKDFHPSLTDDFSCVHNVHHKPS-----MPHTYEIP 55

Query: 56  SKDPQKDPPLGISTMSFDP-LKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDY 114
           SK+  +       T +F     G SN  +    AYT  P +  + + V H       W+ 
Sbjct: 56  SKETIRGITPSPCTEAFGACFHGTSNDHVFFGMAYTTPPTIEPNVSHVSHD---NTMWEN 112

Query: 115 SQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQ----------- 163
            QN       E+       +N    +S+   +P  +     +   N+ Q           
Sbjct: 113 DQNQGFIFGTES------TLNQAMADSNQFNMPKPLLSANEDTIMNRRQNNQVMIKTEQI 166

Query: 164 -KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQ 222
            K+NKR  ++R  K  KK +IIKGQWTP+ED++L++LV  HGTKKWS IAK + GRVGKQ
Sbjct: 167 KKKNKRFQMRRICKPTKKASIIKGQWTPEEDKLLVQLVDLHGTKKWSQIAKMLQGRVGKQ 226

Query: 223 CRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATK 282
           CRERW+NHL+PDIKK+ W+EEED+ILI+AHKE+GNRWAEIAR+L GRTENTIKNHWNATK
Sbjct: 227 CRERWHNHLRPDIKKDGWTEEEDIILIKAHKEIGNRWAEIARKLPGRTENTIKNHWNATK 286

Query: 283 RRQQSKRNTRKQ---------LQENYIKNVT 304
           RRQ S+R   K            +NYI++VT
Sbjct: 287 RRQHSRRTKGKDEISLSLGSNTLQNYIRSVT 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560862|ref|XP_002521444.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223539343|gb|EEF40934.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/319 (42%), Positives = 191/319 (59%), Gaps = 42/319 (13%)

Query: 133 LMNFQDY-----ESSSAKLPDEVSCVTGENAYNQDQKRNKRIPVKRER--KLPKKNNIIK 185
            +NF+D        ++    DEVSC+T +N YN+   + K    + ++  K+ KK+++IK
Sbjct: 16  CLNFEDMGLIMMSGANKVTADEVSCITADNGYNKKVDQKKDKKSQVKKDGKVHKKSHVIK 75

Query: 186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEED 245
           GQWTP+ED +L++LV ++G KKWS IAK + GRVGKQCRERW+NHL+PDI+K+AW EEED
Sbjct: 76  GQWTPEEDCLLVQLVKEYGIKKWSEIAKMLEGRVGKQCRERWHNHLRPDIRKDAWDEEED 135

Query: 246 MILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKR-----NTRKQLQENYI 300
            +LI+AHKE+GNRWAEIA+RL GRTENTIKNHWNATKRRQ S+R     N++  L ++YI
Sbjct: 136 EVLIEAHKEIGNRWAEIAKRLPGRTENTIKNHWNATKRRQFSRRKSKDSNSKSTLLQSYI 195

Query: 301 KNVTARKNNKSNKGINAAPDQDNSANFDAAVVNADNNMMMMPTSSQSQLGITSNFASSLV 360
           K +T+   + S        D           +N   +  M  + S S   + + +     
Sbjct: 196 KTLTSSPLSSSTTTTGKKADH--------VKINLQEHRTMKESPSVSSSQVPNYYDD--- 244

Query: 361 DQWPQVPVYGHHIEAAIGRLSYENGGGYNFGSSVLDEMPSAGSTVESNFE-FELALEIDS 419
                   + H        L ++ G G NF S +  EMP A    ESN   FE+++E+DS
Sbjct: 245 --------HSHE------ELMFDEGYG-NFVSLLDHEMPCASVVDESNLMGFEMSMEMDS 289

Query: 420 NYMPE---EVKREMELMEM 435
             M +   E K+EM+L+EM
Sbjct: 290 LMMMKDAGEAKKEMDLLEM 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
TAIR|locus:2829519	437	MYB118 "myb domain protein 118	0.704	0.709	0.399	2.6e-54
TAIR|locus:2124162	427	MYB98 "myb domain protein 98"	0.386	0.398	0.523	1.8e-50
TAIR|locus:2154543	430	MYB119 "myb domain protein 119	0.270	0.276	0.621	2e-45
TAIR|locus:2170583	359	MYB115 "myb domain protein 115	0.627	0.768	0.375	3.5e-43
TAIR|locus:2184906	423	MYB64 "myb domain protein 64"	0.268	0.278	0.655	5.7e-43
UNIPROTKB|E1BZS0	654	MYBL2 "Myb-related protein B"	0.304	0.204	0.496	1.4e-37
UNIPROTKB|F1NG07	677	MYBL2 "Myb-related protein B"	0.304	0.197	0.496	2e-37
UNIPROTKB|Q03237	686	MYBL2 "Myb-related protein B"	0.304	0.195	0.496	2.3e-37
UNIPROTKB|F1N028	555	MYB "Transcriptional activator	0.345	0.273	0.490	3.9e-37
UNIPROTKB|E9PJT2	326	MYB "Transcriptional activator	0.354	0.478	0.477	3.9e-37

TAIR|locus:2829519 MYB118 "myb domain protein 118" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 137/343 (39%), Positives = 189/343 (55%)

Query:     1 MELDSSFRDDNPFISSLFSDNL-----FKSDLGNGFSSLENPSSKVSPLFQILTILIDLP 55
             ME +S F+   P+++++  D+      F   L + FS + N   K S     +    ++P
Sbjct:     1 MEFESVFKMHYPYLAAVIYDDSSTLKDFHPSLTDDFSCVHNVHHKPS-----MPHTYEIP 55

Query:    56 SKDPQKDPPLGISTMSFDP-LKGYSNGFLGTESAYTATPLVLNSTNDVLHGPERRGFWDY 114
             SK+  +       T +F+    G SN  +    AYT  P +  + + V H       W+ 
Sbjct:    56 SKETIRGITPSPCTEAFEACFHGTSNDHVFFGMAYTTPPTIEPNVSHVSHD---NTMWEN 112

Query:   115 SQNFSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQ-----DQ--KRNK 167
              QN       E+      + +   +      L      +      NQ     +Q  K+NK
Sbjct:   113 DQNQGFIFGTES-TLNQAMADSNQFNMPKPLLSANEDTIMNRRQNNQVMIKTEQIKKKNK 171

Query:   168 RIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERW 227
             R  ++R  K  KK +IIKGQWTP+ED++L++LV  HGTKKWS IAK + GRVGKQCRERW
Sbjct:   172 RFQMRRICKPTKKASIIKGQWTPEEDKLLVQLVDLHGTKKWSQIAKMLQGRVGKQCRERW 231

Query:   228 YNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQS 287
             +NHL+PDIKK+ W+EEED+ILI+AHKE+GNRWAEIAR+L GRTENTIKNHWNATKRRQ S
Sbjct:   232 HNHLRPDIKKDGWTEEEDIILIKAHKEIGNRWAEIARKLPGRTENTIKNHWNATKRRQHS 291

Query:   288 KRNTRKQ---LQ------ENYIKNVTARKNN--KSNKGINAAP 319
             +R   K    L       +NYI++VT   +    +N   N  P
Sbjct:   292 RRTKGKDEISLSLGSNTLQNYIRSVTYNDDPFMTANANANIGP 334

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2124162 MYB98 "myb domain protein 98" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 102/195 (52%), Positives = 134/195 (68%)

Query:   124 PETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQKRNKRIPVKRER-------- 175
             P T  F+P  MNF         +PDE+SCV+ +N   +    NK  P    +        
Sbjct:   156 PPTETFKP--MNFV--------MPDEISCVSADNDCYRATSFNKTKPFLTRKLSSSSSSS 205

Query:   176 --KLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKP 233
               K  KK+ ++KGQWT +EDR+LI+LV ++G +KWS IA+ + GR+GKQCRERW+NHL+P
Sbjct:   206 SWKETKKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRP 265

Query:   234 DIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRK 293
             DIKKE WSEEED +LI+ HKE+GN+WAEIA+RL GRTEN+IKNHWNATKRRQ SKR  R 
Sbjct:   266 DIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRS 325

Query:   294 Q-----LQENYIKNV 303
             +     L ++YIK++
Sbjct:   326 KYPRPSLLQDYIKSL 340

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0045697 "regulation of synergid differentiation" evidence=IMP

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2154543 MYB119 "myb domain protein 119" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
 Identities = 74/119 (62%), Positives = 98/119 (82%)

Query:   176 KLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235
             K     N+IKGQWT +EDR LIRLV QHG +KW++I++ + GR GKQCRERW+NHL+PDI
Sbjct:    96 KKRSSKNLIKGQWTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERWHNHLRPDI 155

Query:   236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQ 294
             KK+ WSEEE+ +L+++H  +GN+WAEIA+ + GRTEN+IKNHWNATKRRQ SKR  +++
Sbjct:   156 KKDGWSEEEERVLVESHMRIGNKWAEIAKLIPGRTENSIKNHWNATKRRQNSKRKHKRE 214

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2170583 MYB115 "myb domain protein 115" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 115/306 (37%), Positives = 166/306 (54%)

Query:    29 NGFSSLENPSSKVSPLFQILTILIDL-PSKD-PQKDPPLGIS----TMSFDPLKGYSNGF 82
             N  SS  N +S     + I   L  + PS + P K P +GI+    T  F+  +      
Sbjct:     5 NLISSTPNQNSNPHD-WDIQNPLFSIHPSAEIPSKYPFMGITSCPNTNVFEEFQYKITND 63

Query:    83 LGTESAY-TATPLVLNSTNDVLHGPERRGFWDYSQNFSAHPKPETPN-FQPILMNFQDYE 140
                 + Y T  P++    +  +H  +      Y+    AH +       +P+L++    E
Sbjct:    64 QNFPTTYNTPFPVISEGISYNMHDVQENTMCGYT----AHNQGLIIGCHEPVLVHAV-VE 118

Query:   141 SSSAKLP--DEVSCVTGENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIR 198
             S    +P  ++++ V+      +D     ++  K + K  KK+ I KGQWTP ED +L+R
Sbjct:   119 SQQFNVPQSEDINLVSQSERVTED-----KVMFKTDHK--KKDIIGKGQWTPTEDELLVR 171

Query:   199 LVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNR 258
             +V   GTK W+ IAK   GRVGKQCRERW+NHL+P+IKK  WSEEED ILI+ HK VGN+
Sbjct:   172 MVKSKGTKNWTSIAKMFQGRVGKQCRERWHNHLRPNIKKNDWSEEEDQILIEVHKIVGNK 231

Query:   259 WAEIARRLIGRTENTIKNHWNATKRRQQSKR-------NTRKQLQENYIKNVTARKNNKS 311
             W EIA+RL GR+EN +KNHWNATKRR  S R       + R    ENYI+++T   N   
Sbjct:   232 WTEIAKRLPGRSENIVKNHWNATKRRLHSVRTKRSDAFSPRNNALENYIRSITINNNALM 291

Query:   312 NKGINA 317
             N+ +++
Sbjct:   292 NREVDS 297

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2184906 MYB64 "myb domain protein 64" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 78/119 (65%), Positives = 100/119 (84%)

Query:   175 RKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
             +K P KN IIKGQWT  EDR LI+LV QHG +KW+VI++ + GR GKQCRERW+NHL+PD
Sbjct:    96 KKQPYKN-IIKGQWTADEDRKLIKLVMQHGERKWAVISEKLEGRAGKQCRERWHNHLRPD 154

Query:   235 IKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRK 293
             IKK++WSEEE+ +L++AH  +GN+WAEIA+ + GRTEN+IKNHWNATKRRQ SKR  ++
Sbjct:   155 IKKDSWSEEEERLLVEAHTRIGNKWAEIAKLIQGRTENSIKNHWNATKRRQNSKRKHKR 213

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0051302 "regulation of cell division" evidence=IMP

UNIPROTKB|E1BZS0 MYBL2 "Myb-related protein B" [Gallus gallus (taxid:9031)]

 Score = 390 (142.3 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
 Identities = 69/139 (49%), Positives = 101/139 (72%)

Query:   182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWS 241
             +++KG WT +ED+ +I LV ++GTK+W++IAK + GR+GKQCRERW+NHL P++KK +W+
Sbjct:    80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 139

Query:   242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKR---NTRKQLQEN 298
             EEED I+ +AHK +GNRWAEIA+ L GRT+N +KNHWN+T +R+       N  K+ Q  
Sbjct:   140 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDTGGFLNETKESQPL 199

Query:   299 YIKNVTARKNNKSNKGINA 317
             Y+  +    +N+S  G  A
Sbjct:   200 YL--LVEVDDNESQSGTRA 216

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|F1NG07 MYBL2 "Myb-related protein B" [Gallus gallus (taxid:9031)]

 Score = 390 (142.3 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
 Identities = 69/139 (49%), Positives = 101/139 (72%)

Query:   182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWS 241
             +++KG WT +ED+ +I LV ++GTK+W++IAK + GR+GKQCRERW+NHL P++KK +W+
Sbjct:    80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 139

Query:   242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKR---NTRKQLQEN 298
             EEED I+ +AHK +GNRWAEIA+ L GRT+N +KNHWN+T +R+       N  K+ Q  
Sbjct:   140 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDTGGFLNETKESQPL 199

Query:   299 YIKNVTARKNNKSNKGINA 317
             Y+  +    +N+S  G  A
Sbjct:   200 YL--LVEVDDNESQSGTRA 216

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031523 "Myb complex" evidence=IEA

GO:0090307 "spindle assembly involved in mitosis" evidence=IEA

UNIPROTKB|Q03237 MYBL2 "Myb-related protein B" [Gallus gallus (taxid:9031)]

 Score = 390 (142.3 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
 Identities = 69/139 (49%), Positives = 101/139 (72%)

Query:   182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWS 241
             +++KG WT +ED+ +I LV ++GTK+W++IAK + GR+GKQCRERW+NHL P++KK +W+
Sbjct:    80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 139

Query:   242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKR---NTRKQLQEN 298
             EEED I+ +AHK +GNRWAEIA+ L GRT+N +KNHWN+T +R+       N  K+ Q  
Sbjct:   140 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDTGGFLNETKESQPL 199

Query:   299 YIKNVTARKNNKSNKGINA 317
             Y+  +    +N+S  G  A
Sbjct:   200 YL--LVEVDDNESQSGTRA 216

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1N028 MYB "Transcriptional activator Myb" [Bos taurus (taxid:9913)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 76/155 (49%), Positives = 104/155 (67%)

Query:   168 RIPVKRERKLPKKNN--IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRE 225
             R  V+ + +  K  N  +IKG WT +ED+ +I LV ++G K+WSVIAK + GR+GKQCRE
Sbjct:    73 RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRE 132

Query:   226 RWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
             RW+NHL P++KK +W+EEED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct:   133 RWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Query:   286 QSKRNTRKQLQENYIKNVTAR-KNNKSNKGINAAP 319
               +    ++  +     VT   + N    G   AP
Sbjct:   193 VEQEGYLQESSKASQPPVTTSFQKNSHLMGFTHAP 227

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E9PJT2 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 76/159 (47%), Positives = 106/159 (66%)

Query:   164 KRNKRIPVKRERKLPKKNN--IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGK 221
             +   R  V+ + +  K  N  +IKG WT +ED+ +I LV ++G K+WSVIAK + GR+GK
Sbjct:    45 REENRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGK 104

Query:   222 QCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNAT 281
             QCRERW+NHL P++KK +W+EEED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T
Sbjct:   105 QCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 164

Query:   282 KRRQQSKRNTRKQLQENYIKNV-TARKNNKSNKGINAAP 319
              RR+  +    ++  +     V T+ + N    G   AP
Sbjct:   165 MRRKVEQEGYLQESSKASQPAVATSFQKNSHLMGFAQAP 203

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	440
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	1e-25
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	3e-22
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	1e-20
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	7e-17
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-16
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-15
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-11
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-08
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	9e-05
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	1e-04
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	5e-04
pfam13837	84	pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi	8e-04

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  108 bits (270), Expect = 1e-25
 Identities = 57/166 (34%), Positives = 99/166 (59%), Gaps = 10/166 (6%)

Query: 180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAK-AMTGRVGKQCRERWYNHLKPDIKKE 238
           K  + KG W+P+ED  L+R + ++G   WS + K A   R GK CR RW N+L+PD+K+ 
Sbjct: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 239 AWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQEN 298
            +S++E+ ++I+ H  +GNRW++IA +L GRT+N IKN WN+           +K+L++ 
Sbjct: 69  TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSC---------LKKKLRQR 119

Query: 299 YIKNVTARKNNKSNKGINAAPDQDNSANFDAAVVNADNNMMMMPTS 344
            I   T +  ++   G +  P  D+ ++  ++VV+ + N++    S
Sbjct: 120 GIDPNTHKPLSEVENGEDKNPPTDDKSDKASSVVSNELNLLKADNS 165

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 95.1 bits (236), Expect = 3e-22
 Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKW-SVIAKAMTGRVGKQCRERWYNHLKPDIKKE 238
           K  + +G WT +ED +L+  + + G  +W S+  +A   R GK CR RW N+L+P +K+ 
Sbjct: 20  KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRG 79

Query: 239 AWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQEN 298
             + +E+ ++++ H+ +GNRW+ IA R+ GRT+N IKN+WN   R++  ++    Q  + 
Sbjct: 80  GITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKP 139

Query: 299 YIKNVTARKNNKSNKGINAAPDQDNSANFDAAVVNA 334
              N   +   + + G     +  +S++ D   VN 
Sbjct: 140 LDANNIHKPEEEVSGGQKYPIEPISSSHTDDTTVNG 175

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 93.7 bits (233), Expect = 1e-20
 Identities = 47/172 (27%), Positives = 66/172 (38%), Gaps = 7/172 (4%)

Query: 178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKK 237
             +     G W   ED  L  LV + G   WS +A  +    GKQ   RW NHL P +KK
Sbjct: 13  LMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKK 72

Query: 238 EAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQE 297
           + WSEEED  LI   KE+G +W+ IA     RT       +  T     S  +  K  + 
Sbjct: 73  KNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLED-LSSTHDSKLQRR 131

Query: 298 NYIKNVTARKNNKSNKGINAAPDQDNSANFDAAVVNADNNMMMMPTSSQSQL 349
           N    +    N  S +  +   D+          VN + +  +         
Sbjct: 132 NEFDKIDPF-NENSARRPDIYEDELLE-----REVNREASYRLRVPRVSKAD 177

Length = 512

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 73.9 bits (182), Expect = 7e-17
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 188 WTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMI 247
           WT +ED  L++LV ++G   W  IA+ + GR    CR+RW   L+P   +  W++EED  
Sbjct: 1   WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 248 L 248
           L
Sbjct: 59  L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 71.4 bits (176), Expect = 4e-16
 Identities = 24/47 (51%), Positives = 31/47 (65%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHL 231
           +G WTP+ED +LI  V +HG   WS IAK + GR   QC+ RW N+L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKP 233
           KG+WT +ED +LI LV ++G   W  IAK + GR  +QCRERW N LKP
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 22/44 (50%), Positives = 28/44 (63%)

Query: 188 WTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHL 231
           WT +ED +L+  V ++G   W  IAK + GR  KQCRERW N L
Sbjct: 2   WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 61.0 bits (149), Expect = 2e-12
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 237 KEAWSEEEDMILIQAHKEVGNR-WAEIARRLIGRTENTIKNHWN 279
           +  W+ EED +LI+A K+ GN  W++IA+ L GRT+N  KN WN
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWN 44

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 237 KEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRR 284
           K  W+EEED +LI+  K+ G N W +IA+ L GRT    +  W    + 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 239 AWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATK 282
            W+EEED +L++A K+ G N W +IA+ L GRT    +  W    
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQENY 299
           W+EEED  L++  ++ GN W +IA  L GRT +  ++ W    R    KR+     +E  
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLR---PKRSRGPWTKEED 56

Query: 300 IK 301
            +
Sbjct: 57  QR 58

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 188 WTPQEDRMLIRLVAQHGTKKWSVIAKA---MTGRVGKQCRERWYNHLK 232
           WT +ED  L+  V ++G   W+ I K    +  R     +++W N  K
Sbjct: 3   WTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 233 PDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRT 270
           P IKK  W+ EED  L+   K +  +W  IA  ++GRT
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTIA-PIVGRT 37

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 154 TGENAYNQDQKRNKR-IPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIA 212
              N Y +   R+K+ I     RK        +G+WT +E++ L +LV +HG   W+ I 
Sbjct: 261 FWPNIYKKLPYRDKKSIYKHLRRKYNIFE--QRGKWTKEEEQELAKLVVEHG-GSWTEIG 317

Query: 213 KAMTGRVGKQCRERWYNHLKP--DIKKEAWSEEEDMILIQAHKEVGNR 258
           K + GR+   CR+RW +++K    +K+  WS EE+ +L +   E+   
Sbjct: 318 KLL-GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLE 364

Length = 512

>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 16/67 (23%)

Query: 187 QWTPQEDRMLIRLVAQ-----------HGTKKWSVIAKAMTG----RVGKQCRERWYNHL 231
           +WT +E R LI +  +                W  IA+ M      R  +QC+E+W  +L
Sbjct: 3   KWTDEETRALIEIWGERLDSLFQRGTKRNKHVWEEIAEKMAERGYNRSAEQCKEKW-KNL 61

Query: 232 KPDIKKE 238
           K   KKE
Sbjct: 62  KKKYKKE 68

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.97
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.79
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.78
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.6
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.49
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.49
PLN03212	249	Transcription repressor MYB5; Provisional	99.48
PLN03091	459	hypothetical protein; Provisional	99.44
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.42
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.4
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.34
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.33
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.2
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.12
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.09
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.98
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.95
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.91
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.67
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.44
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.87
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.6
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.53
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.42
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.33
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.08
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.02
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.97
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.84
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.76
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.48
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	96.48
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.35
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.3
PRK13923	170	putative spore coat protein regulator protein YlbO	96.25
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.12
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.8
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.67
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.41
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.28
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.99
PRK13923	170	putative spore coat protein regulator protein YlbO	94.51
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	94.25
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.09
KOG1194	534	consensus Predicted DNA-binding protein, contains	90.54
KOG4282	345	consensus Transcription factor GT-2 and related pr	90.32
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	88.61
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	88.23
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	87.97
KOG4282	345	consensus Transcription factor GT-2 and related pr	87.44
KOG2656	445	consensus DNA methyltransferase 1-associated prote	86.45
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	84.48
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	83.19
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	82.7

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=1.4e-31  Score=258.01  Aligned_cols=112  Identities=36%  Similarity=0.773  Sum_probs=105.7

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-cCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044021          179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM-TGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGN  257 (440)
Q Consensus       179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l-pgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~  257 (440)
                      -++.++|++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++.+||+
T Consensus        19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn   98 (249)
T PLN03212         19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN   98 (249)
T ss_pred             ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence            3578899999999999999999999998999999988 699999999999999999999999999999999999999999


Q ss_pred             chHHHHHhcCCCCHHHHHHHHHHhhHHHhhhhh
Q 044021          258 RWAEIARRLIGRTENTIKNHWNATKRRQQSKRN  290 (440)
Q Consensus       258 kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k  290 (440)
                      +|+.||+.|+|||+++||+||+.+++++..+..
T Consensus        99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~  131 (249)
T PLN03212         99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG  131 (249)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence            999999999999999999999999988765443

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.97  E-value=8.7e-31  Score=253.83  Aligned_cols=112  Identities=40%  Similarity=0.769  Sum_probs=105.5

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc-CCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044021          179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGN  257 (440)
Q Consensus       179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp-gRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~  257 (440)
                      +++.+.||+||+|||++|+++|++||.++|..||+.++ +|++++||.||.|||+|+++++.||+|||.+|++++..+|+
T Consensus         3 kk~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GN   82 (238)
T KOG0048|consen    3 RNPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGN   82 (238)
T ss_pred             CCccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCc
Confidence            34556689999999999999999999999999999998 99999999999999999999999999999999999999999


Q ss_pred             chHHHHHhcCCCCHHHHHHHHHHhhHHHhhhhh
Q 044021          258 RWAEIARRLIGRTENTIKNHWNATKRRQQSKRN  290 (440)
Q Consensus       258 kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k  290 (440)
                      +|+.||++|||||++.|||+|+..++|+..+..
T Consensus        83 rWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   83 RWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999888765543

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=260.30  Aligned_cols=110  Identities=41%  Similarity=0.832  Sum_probs=104.5

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-cCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044021          179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM-TGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGN  257 (440)
Q Consensus       179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l-pgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~  257 (440)
                      .+..++||+||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++++||+
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            3467889999999999999999999999999999988 599999999999999999999999999999999999999999


Q ss_pred             chHHHHHhcCCCCHHHHHHHHHHhhHHHhhh
Q 044021          258 RWAEIARRLIGRTENTIKNHWNATKRRQQSK  288 (440)
Q Consensus       258 kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk  288 (440)
                      +|++||+.|+|||+++||+||+.++||+.+.
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~  118 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ  118 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987654

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.79  E-value=1.2e-19  Score=192.10  Aligned_cols=121  Identities=31%  Similarity=0.465  Sum_probs=110.7

Q ss_pred             hhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHH
Q 044021          164 KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEE  243 (440)
Q Consensus       164 ~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~E  243 (440)
                      -.+++.+.-.||...++|.+++|.||.+||.+|+.+|.+||.++|.+|.+.+|||+..|||+||.|.|+...+++.||-.
T Consensus       339 pgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~  418 (939)
T KOG0049|consen  339 PGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLV  418 (939)
T ss_pred             CCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeec
Confidence            45666777789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CchHHHHHhcCCCCH---HHHHHHHHHhhHH
Q 044021          244 EDMILIQAHKEVG-NRWAEIARRLIGRTE---NTIKNHWNATKRR  284 (440)
Q Consensus       244 ED~~Ll~lv~k~G-~kW~~IAk~l~gRT~---~qcr~Rw~~llrr  284 (440)
                      ||+.|+.+|++|| ++|.+||..||+||.   ..||.|+-.+..+
T Consensus       419 edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~r  463 (939)
T KOG0049|consen  419 EDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLR  463 (939)
T ss_pred             chHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHH
Confidence            9999999999999 789999999999999   5566666555444

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.78  E-value=3.8e-19  Score=188.31  Aligned_cols=128  Identities=22%  Similarity=0.416  Sum_probs=111.2

Q ss_pred             hcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcC-Cccccccc------------------
Q 044021          165 RNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTG-RVGKQCRE------------------  225 (440)
Q Consensus       165 r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpg-Rt~~QCr~------------------  225 (440)
                      +.+.-.|+..|.++++|.++|..|+.|||++|..+...+|-.+|.+||..|.. |+..||.+                  
T Consensus       233 srS~~~~~~~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEe  312 (939)
T KOG0049|consen  233 SRSEWAVKSKWYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEE  312 (939)
T ss_pred             cCCHHHHHHHHhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhh
Confidence            45556899999999999999999999999999988887777677777777644 66666655                  


Q ss_pred             ------------------------------------hhcccccCCCCCCCCCHHHHHHHHHHHHHhCCc-hHHHHHhcCC
Q 044021          226 ------------------------------------RWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNR-WAEIARRLIG  268 (440)
Q Consensus       226 ------------------------------------Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~k-W~~IAk~l~g  268 (440)
                                                          ||.+.|+|.+++|+||++||.+|+.+|.+||.+ |.+|-..+||
T Consensus       313 d~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPn  392 (939)
T KOG0049|consen  313 DTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPN  392 (939)
T ss_pred             hHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCC
Confidence                                                788888999999999999999999999999965 9999999999


Q ss_pred             CCHHHHHHHHHHhhHHHhhhhhhh
Q 044021          269 RTENTIKNHWNATKRRQQSKRNTR  292 (440)
Q Consensus       269 RT~~qcr~Rw~~llrr~~sk~k~~  292 (440)
                      |+..|||.||...+.+..++.++.
T Consensus       393 RSdsQcR~RY~nvL~~s~K~~rW~  416 (939)
T KOG0049|consen  393 RSDSQCRERYTNVLNRSAKVERWT  416 (939)
T ss_pred             ccHHHHHHHHHHHHHHhhccCcee
Confidence            999999999999998877766554

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.60  E-value=9.3e-16  Score=118.04  Aligned_cols=60  Identities=47%  Similarity=0.974  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHH
Q 044021          188 WTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMIL  248 (440)
Q Consensus       188 WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~L  248 (440)
                      ||+|||++|+++|.+||. +|..||+.|+.|++.||+.||.++|.+.+++++||++||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999996 599999999669999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.49  E-value=3e-14  Score=150.98  Aligned_cols=108  Identities=37%  Similarity=0.618  Sum_probs=102.2

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 044021          180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRW  259 (440)
Q Consensus       180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW  259 (440)
                      ...++.|.|+..||+.|..+|+.||+.+|..||..+.-|+++||+.||+++++|.+++..|+.+||..|+.+..++|..|
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            34457889999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021          260 AEIARRLIGRTENTIKNHWNATKRRQQS  287 (440)
Q Consensus       260 ~~IAk~l~gRT~~qcr~Rw~~llrr~~s  287 (440)
                      +.||..+++|+..+|.+||..++....+
T Consensus        95 stia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          95 STIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhccccCccchHHHHHHHHHHhhhhhc
Confidence            9999999999999999999988877655

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=2.2e-14  Score=149.75  Aligned_cols=106  Identities=34%  Similarity=0.583  Sum_probs=100.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHH
Q 044021          183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEI  262 (440)
Q Consensus       183 ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~I  262 (440)
                      ++.|-|+.-||++|..+|.+||...|++||+.++..+++||+.||..+|+|.+++..|+.|||++||.+.......|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHhhHHHhhhh
Q 044021          263 ARRLIGRTENTIKNHWNATKRRQQSKR  289 (440)
Q Consensus       263 Ak~l~gRT~~qcr~Rw~~llrr~~sk~  289 (440)
                      +..| ||+.+||-.||+.++--..++.
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence            9999 9999999999999887765443

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.48  E-value=5.3e-15  Score=143.49  Aligned_cols=80  Identities=19%  Similarity=0.355  Sum_probs=70.3

Q ss_pred             CCcchHHh-hhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021          156 ENAYNQDQ-KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD  234 (440)
Q Consensus       156 ~N~~~q~~-~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~  234 (440)
                      |..+++.. ..++..|||.||.++++|.+++|+||+|||++|++++..||.+ |..||+.|+|||..+|+.||+.+++..
T Consensus        48 W~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK-Ws~IAk~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212         48 WRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR-WSLIAGRIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             HHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc-HHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence            44444444 3678899999999999999999999999999999999999986 999999999999999999999888754


Q ss_pred             CC
Q 044021          235 IK  236 (440)
Q Consensus       235 ik  236 (440)
                      +.
T Consensus       127 l~  128 (249)
T PLN03212        127 LL  128 (249)
T ss_pred             HH
Confidence            33

>PLN03091 hypothetical protein; Provisional

Probab=99.44  E-value=2.6e-14  Score=147.84  Aligned_cols=69  Identities=23%  Similarity=0.444  Sum_probs=65.0

Q ss_pred             hcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021          165 RNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD  234 (440)
Q Consensus       165 r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~  234 (440)
                      .++.+|||.||.++++|.++||+||+|||++|++++++||.+ |..||+.|+||++.+|+.||+.+|+..
T Consensus        47 gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK-WskIAk~LPGRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         47 QRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR-WSQIAAQLPGRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             CcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc-hHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999986 999999999999999999999877643

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.42  E-value=2.1e-13  Score=146.00  Aligned_cols=102  Identities=30%  Similarity=0.632  Sum_probs=93.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC--CCCCCCHHHHHHHHHHHH-------H
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI--KKEAWSEEEDMILIQAHK-------E  254 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i--kk~~WT~EED~~Ll~lv~-------k  254 (440)
                      .||+||+||++.|..+|.++|.. |..|+..| ||.+..|++||+++...+-  +++.||.||.++|+.+|.       +
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~~-W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q  460 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGND-WKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ  460 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhccc-HHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence            89999999999999999999987 99999999 9999999999999999884  889999999999999995       3


Q ss_pred             h-------------------CCchHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021          255 V-------------------GNRWAEIARRLIGRTENTIKNHWNATKRRQQS  287 (440)
Q Consensus       255 ~-------------------G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~s  287 (440)
                      +                   +-.|+.|++.+++|+..|||.+|+.++.+-..
T Consensus       461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~  512 (607)
T KOG0051|consen  461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF  512 (607)
T ss_pred             ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence            3                   12599999988999999999999998877554

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.40  E-value=1.5e-13  Score=101.92  Aligned_cols=47  Identities=47%  Similarity=0.877  Sum_probs=42.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc-CCccccccchhcccc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHL  231 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp-gRt~~QCr~Rw~~~L  231 (440)
                      ||+||+|||++|+++|.+||.++|..||..|+ +||+.||+.||+++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999988999999999 999999999998864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.34  E-value=3.6e-13  Score=130.94  Aligned_cols=76  Identities=24%  Similarity=0.476  Sum_probs=68.9

Q ss_pred             CCcchHHhh-hcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021          156 ENAYNQDQK-RNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       156 ~N~~~q~~~-r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      |+...+... .+..++||.||.+|++|.++||.||+|||++|+++...+|.+ |..||++|||||...++.+|..+|+
T Consensus        32 W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr-Ws~IA~~LPGRTDNeIKN~Wnt~lk  108 (238)
T KOG0048|consen   32 GTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR-WSLIAGRLPGRTDNEVKNHWNTHLK  108 (238)
T ss_pred             cchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH-HHHHHhhCCCcCHHHHHHHHHHHHH
Confidence            555656655 778899999999999999999999999999999999999998 9999999999999999999977664

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.33  E-value=2.4e-12  Score=95.38  Aligned_cols=46  Identities=35%  Similarity=0.699  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc-hHHHHHhcC-CCCHHHHHHHHHHhh
Q 044021          237 KEAWSEEEDMILIQAHKEVGNR-WAEIARRLI-GRTENTIKNHWNATK  282 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~k-W~~IAk~l~-gRT~~qcr~Rw~~ll  282 (440)
                      |++||+|||.+|+++|.+||.. |..||..|+ |||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999998864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.20  E-value=2.4e-11  Score=93.45  Aligned_cols=54  Identities=35%  Similarity=0.629  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHhhhhhhhh
Q 044021          240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRK  293 (440)
Q Consensus       240 WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k~~~  293 (440)
                      ||+|||.+|+++|.+||.+|..||+.|+.||+.+|++||+..++...++.....
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~   54 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTK   54 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCH
Confidence            999999999999999999999999999669999999999997766555555443

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.12  E-value=1.2e-10  Score=83.65  Aligned_cols=47  Identities=43%  Similarity=0.823  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021          237 KEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llr  283 (440)
                      +++||++||.+|+.++.+|| .+|..||..|++||+.+|+.||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.09  E-value=9.8e-11  Score=84.07  Aligned_cols=48  Identities=54%  Similarity=1.049  Sum_probs=44.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      ++.||++||.+|+.++.+||..+|..||..|++|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            468999999999999999995569999999999999999999987654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.98  E-value=1.1e-09  Score=77.60  Aligned_cols=43  Identities=42%  Similarity=0.865  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHh
Q 044021          239 AWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNAT  281 (440)
Q Consensus       239 ~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~l  281 (440)
                      +||++||..|+.++.+|| .+|..||+.+++||..+|++||+.+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 8999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.95  E-value=7e-10  Score=78.54  Aligned_cols=44  Identities=48%  Similarity=0.949  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021          187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH  230 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~  230 (440)
                      .||++||+.|++++.+||..+|..||..+++|++.+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            59999999999999999966799999999999999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.91  E-value=4e-09  Score=113.53  Aligned_cols=119  Identities=23%  Similarity=0.340  Sum_probs=94.0

Q ss_pred             cCCCCHHHHHHHHHHHHHh----CCC-------------------ChHHHHHHhcCCccccccchhcccccCCC-CCCCC
Q 044021          185 KGQWTPQEDRMLIRLVAQH----GTK-------------------KWSVIAKAMTGRVGKQCRERWYNHLKPDI-KKEAW  240 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~----G~~-------------------nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i-kk~~W  240 (440)
                      -+.|+.+||.+|.+.|..|    |-.                   -|..|...||-|+...++.+-++...+-- ++|.|
T Consensus       308 ~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~w  387 (607)
T KOG0051|consen  308 LKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGKW  387 (607)
T ss_pred             hhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCCC
Confidence            3889999999999999887    110                   17888888999999988773333333333 89999


Q ss_pred             CHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHh--hhhhhhhHHHHHHHhhhh
Q 044021          241 SEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQ--SKRNTRKQLQENYIKNVT  304 (440)
Q Consensus       241 T~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~--sk~k~~~~~~~~~i~~~~  304 (440)
                      |+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+.+...  .++.......+..++.++
T Consensus       388 t~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~  452 (607)
T KOG0051|consen  388 TPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVN  452 (607)
T ss_pred             CcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999 9999999999999988775  444444444445555554

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.67  E-value=1.1e-08  Score=108.95  Aligned_cols=119  Identities=20%  Similarity=0.185  Sum_probs=106.0

Q ss_pred             hhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHH
Q 044021          164 KRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEE  243 (440)
Q Consensus       164 ~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~E  243 (440)
                      ..+...+|+.||.+++.|.++++.|+.|||+.|+.+-..+|+. |+.||..+++|+..+|.+||.+.+.+... ..||..
T Consensus        51 ~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~  128 (512)
T COG5147          51 ISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKDRRTAQQCVERYVNTLEDLSS-THDSKL  128 (512)
T ss_pred             cccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccccCccchHHHHHHHHHHhhhhhc-cccccc
Confidence            4467889999999999999999999999999999999999998 99999999999999999999999987666 889999


Q ss_pred             HHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       244 ED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      ++...+..+..|+..|..+....-.+-...|.+++..+..+
T Consensus       129 ~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~  169 (512)
T COG5147         129 QRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLR  169 (512)
T ss_pred             cchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHH
Confidence            99988888889998888888777777888888888655444

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=5.6e-09  Score=109.83  Aligned_cols=83  Identities=31%  Similarity=0.472  Sum_probs=72.8

Q ss_pred             CCCCccccCCCCcchHH---hhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCcccc
Q 044021          146 LPDEVSCVTGENAYNQD---QKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQ  222 (440)
Q Consensus       146 ~pde~s~~~~~N~~~q~---~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~Q  222 (440)
                      +...+. .++.|.++..   ..+++..+|+.||..+++|.+++-.|+.|||++|+-+.....+. |..||..| ||++.|
T Consensus        18 lkaav~-kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~q-wrtIa~i~-gr~~~q   94 (617)
T KOG0050|consen   18 LKAAVM-KYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQ-WRTIADIM-GRTSQQ   94 (617)
T ss_pred             HHHHHH-HcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCc-cchHHHHh-hhhHHH
Confidence            333343 6677777666   46788999999999999999999999999999999999999987 99999999 999999


Q ss_pred             ccchhcccc
Q 044021          223 CRERWYNHL  231 (440)
Q Consensus       223 Cr~Rw~~~L  231 (440)
                      |.+||.+.|
T Consensus        95 c~eRy~~ll  103 (617)
T KOG0050|consen   95 CLERYNNLL  103 (617)
T ss_pred             HHHHHHHHH
Confidence            999998876

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.87  E-value=3.6e-05  Score=59.80  Aligned_cols=47  Identities=19%  Similarity=0.478  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ch---HHHHHhcC-CC-CHHHHHHHHHHhhH
Q 044021          237 KEAWSEEEDMILIQAHKEVGN-RW---AEIARRLI-GR-TENTIKNHWNATKR  283 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~-kW---~~IAk~l~-gR-T~~qcr~Rw~~llr  283 (440)
                      +-.||+||..+++++++.+|. +|   ..|++.|. .| |..||+.|++++.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            568999999999999999996 99   99999985 45 99999999988754

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.60  E-value=4.6e-05  Score=79.63  Aligned_cols=51  Identities=24%  Similarity=0.586  Sum_probs=46.9

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021          182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       182 ~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      .+-...||++|+-+|++++..||-+||..||.++..|+..+|+++|.+++-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            345678999999999999999999999999999999999999999998764

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.53  E-value=9.8e-05  Score=57.38  Aligned_cols=47  Identities=17%  Similarity=0.277  Sum_probs=41.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCh---HHHHHHhc-CC-ccccccchhcccc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKW---SVIAKAMT-GR-VGKQCRERWYNHL  231 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW---~~IA~~lp-gR-t~~QCr~Rw~~~L  231 (440)
                      +-.||+||..+++++++.+|.++|   ..|++.|. .| |..||+.+++.+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999998789   99999884 45 9999999987764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.42  E-value=0.00024  Score=74.46  Aligned_cols=50  Identities=24%  Similarity=0.551  Sum_probs=45.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          235 IKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       235 ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      +-...||.+|+.+||+++..|| ++|..||.+++.||..+|+.||.+..-.
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~  120 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN  120 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence            3456899999999999999999 8999999999999999999999876543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.33  E-value=0.00031  Score=65.04  Aligned_cols=52  Identities=33%  Similarity=0.631  Sum_probs=45.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CC----chHHHHHhcCCCCHHHHHHHHHHhhHHHhhh
Q 044021          236 KKEAWSEEEDMILIQAHKEV---GN----RWAEIARRLIGRTENTIKNHWNATKRRQQSK  288 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~---G~----kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk  288 (440)
                      ....||.|||.+|-+.|-+|   |+    ....+++.| +||+.+|.-|||+.+|++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            46789999999999999887   43    389999999 999999999999999987543

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.08  E-value=0.0018  Score=62.18  Aligned_cols=97  Identities=26%  Similarity=0.469  Sum_probs=74.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHh---cCCccccccchhccccc-CCC--------------------CCCCCCH
Q 044021          187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAM---TGRVGKQCRERWYNHLK-PDI--------------------KKEAWSE  242 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~l---pgRt~~QCr~Rw~~~L~-p~i--------------------kk~~WT~  242 (440)
                      +|++++|-+|+.+|..-.  +-..|+..+   ..-|...+.+||+..|- |.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998876  368887765   45677888999988763 221                    4578999


Q ss_pred             HHHHHHHHHHHHhCC---chHHHHH-----hcCCCCHHHHHHHHHHhhHHH
Q 044021          243 EEDMILIQAHKEVGN---RWAEIAR-----RLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       243 EED~~Ll~lv~k~G~---kW~~IAk-----~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      +|+++|.........   .+.+|=.     +-++||+.++..||..+.+..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~  129 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH  129 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence            999999997766654   4777733     236899999999999665543

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.02  E-value=0.00071  Score=71.51  Aligned_cols=45  Identities=22%  Similarity=0.496  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHh
Q 044021          237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNAT  281 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~l  281 (440)
                      ...||.+|..+|+++++.||..|.+||+++++||..||.-||..+
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            358999999999999999999999999999999999999999765

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.97  E-value=0.00098  Score=71.85  Aligned_cols=48  Identities=17%  Similarity=0.425  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021          236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llr  283 (440)
                      .+..||++|..+||+++..||..|.+||.++++||..||-.|+..+-.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LPi  299 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLPI  299 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcCc
Confidence            357899999999999999999999999999999999999999976543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.84  E-value=0.0015  Score=53.46  Aligned_cols=50  Identities=34%  Similarity=0.710  Sum_probs=36.1

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------chHHHHHhcC----CCCHHHHHHHHHHhhHHHh
Q 044021          237 KEAWSEEEDMILIQAHKE------VG--N------RWAEIARRLI----GRTENTIKNHWNATKRRQQ  286 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k------~G--~------kW~~IAk~l~----gRT~~qcr~Rw~~llrr~~  286 (440)
                      +..||.+|...||+++.+      ++  +      -|..||..|.    .||+.||++||..+.++=.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk   68 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK   68 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            357999999999999877      22  1      3999999873    6999999999999776643

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.76  E-value=0.001  Score=70.38  Aligned_cols=46  Identities=20%  Similarity=0.434  Sum_probs=42.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH  230 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~  230 (440)
                      ....||.+|.-+|+++|+.||.. |.+||.++.+|+..||-.||.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDd-W~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDD-WDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhh-HHHHHHHhCCCCHHHHHHHHHcC
Confidence            55699999999999999999976 99999999999999999999764

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.48  E-value=0.002  Score=69.56  Aligned_cols=63  Identities=17%  Similarity=0.397  Sum_probs=51.5

Q ss_pred             CCcccccccccCCC---------CCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021          167 KRIPVKRERKLPKK---------NNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH  230 (440)
Q Consensus       167 ~~~~~rrrwk~~kk---------p~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~  230 (440)
                      .+..|...|.....         ..-.++.||.+|+-+|+++|+.||.. |.+||.++.+|+..||-.++.+.
T Consensus       226 ~c~~c~~~g~~~~~~~~~Df~~~~~~~~~~WT~qE~lLLLE~ie~y~dd-W~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  226 LCADCYDQGEFPSEFKKSDFKVIGESARPNWTEQETLLLLEAIEMYGDD-WNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             hhHHHHhcCCccCccccccchhccccCCCCccHHHHHHHHHHHHHhccc-HHHHHhccCCCCHHHHHHHHHhc
Confidence            34566666654433         23457899999999999999999976 99999999999999999999664

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=96.48  E-value=0.011  Score=69.03  Aligned_cols=100  Identities=19%  Similarity=0.361  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccc-------hhccc------c----------------------
Q 044021          187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRE-------RWYNH------L----------------------  231 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~-------Rw~~~------L----------------------  231 (440)
                      .||.-+=..++.+..+||..+-..||..|.|++...++.       ||...      +                      
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~  905 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK  905 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488888888999999999989999999999888876654       21110      0                      


Q ss_pred             ---------------cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHH------------hcCCCCHHHHHHHHHHhhH
Q 044021          232 ---------------KPDIKKEAWSEEEDMILIQAHKEVG-NRWAEIAR------------RLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       232 ---------------~p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk------------~l~gRT~~qcr~Rw~~llr  283 (440)
                                     -+..++..||+|||+.|+-.+.+|| ++|..|-.            ++..||+..|..|.+.+++
T Consensus       906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~  985 (1033)
T PLN03142        906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR  985 (1033)
T ss_pred             HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence                           0122455799999999999999999 78999954            2458999999999999887


Q ss_pred             HHh
Q 044021          284 RQQ  286 (440)
Q Consensus       284 r~~  286 (440)
                      --.
T Consensus       986 ~~~  988 (1033)
T PLN03142        986 LIE  988 (1033)
T ss_pred             HHH
Confidence            653

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.35  E-value=0.0021  Score=52.52  Aligned_cols=46  Identities=35%  Similarity=0.702  Sum_probs=32.9

Q ss_pred             CCCCHHHHHHHHHHHHH--h----C--CC-----ChHHHHHHh----cCCccccccchhcccc
Q 044021          186 GQWTPQEDRMLIRLVAQ--H----G--TK-----KWSVIAKAM----TGRVGKQCRERWYNHL  231 (440)
Q Consensus       186 G~WT~EED~~Ll~lV~k--~----G--~~-----nW~~IA~~l----pgRt~~QCr~Rw~~~L  231 (440)
                      -.||.+|...|++++..  +    +  ..     -|..||..|    ..|++.||+.||.++.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            47999999999999987  2    1  11     299999988    3699999999997754

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.30  E-value=0.02  Score=53.33  Aligned_cols=48  Identities=27%  Similarity=0.622  Sum_probs=41.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHh---CCC---ChHHHHHHhcCCccccccchhccccc
Q 044021          184 IKGQWTPQEDRMLIRLVAQH---GTK---KWSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~---G~~---nW~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      +...||.|||.+|.+.|-+|   |.-   -+..|+..| +||+..|.=||+.+++
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            56789999999999999998   321   388899998 9999999999998886

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.25  E-value=0.0053  Score=57.61  Aligned_cols=51  Identities=25%  Similarity=0.470  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc-------hHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021          236 KKEAWSEEEDMILIQAHKEVGNR-------WAEIARRLIGRTENTIKNHWNATKRRQQS  287 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G~k-------W~~IAk~l~gRT~~qcr~Rw~~llrr~~s  287 (440)
                      ++..||.|||.+|-+.|-.|+..       ...++..| +||..+|..||+..+|++..
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            46789999999999999888732       67777888 99999999999999997653

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.12  E-value=0.0087  Score=47.78  Aligned_cols=50  Identities=22%  Similarity=0.406  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-hHHHHHhcC-CCCHHHHHHHHHHhhHHHh
Q 044021          237 KEAWSEEEDMILIQAHKEVG--------NR-WAEIARRLI-GRTENTIKNHWNATKRRQQ  286 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G--------~k-W~~IAk~l~-gRT~~qcr~Rw~~llrr~~  286 (440)
                      +.+||.+||..|+..|.++.        ++ |..+++.-+ .+|-.+.|+||.+.++.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999996542        22 999999887 9999999999988776653

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.80  E-value=0.0048  Score=49.26  Aligned_cols=51  Identities=20%  Similarity=0.421  Sum_probs=33.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhC--------CCChHHHHHHhc-CCccccccchhcccccCCC
Q 044021          185 KGQWTPQEDRMLIRLVAQHG--------TKKWSVIAKAMT-GRVGKQCRERWYNHLKPDI  235 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G--------~~nW~~IA~~lp-gRt~~QCr~Rw~~~L~p~i  235 (440)
                      |-+||.|||++|++.|..+.        ..=|..++..-+ .+|-..-|+||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            45799999999999997662        112999998877 8899999999999987643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.67  E-value=0.012  Score=59.89  Aligned_cols=46  Identities=28%  Similarity=0.653  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021          238 EAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       238 ~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llr  283 (440)
                      ..|+.+|+.+|+++....| ++|..||.+++.|+...||.||.++..
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            4699999999999999999 899999999999999999999977643

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.41  E-value=0.019  Score=46.15  Aligned_cols=47  Identities=30%  Similarity=0.555  Sum_probs=38.7

Q ss_pred             cCCCCHHHHHHHHHHHHHh-----CCC-----------ChHHHHHHh-----cCCccccccchhcccc
Q 044021          185 KGQWTPQEDRMLIRLVAQH-----GTK-----------KWSVIAKAM-----TGRVGKQCRERWYNHL  231 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~-----G~~-----------nW~~IA~~l-----pgRt~~QCr~Rw~~~L  231 (440)
                      +..||.+|.+.|+++|.+|     +..           -|..|+..|     +.|+..||+.+|.++.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4579999999999999988     211           299999988     3699999999997754

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.28  E-value=0.0099  Score=60.55  Aligned_cols=48  Identities=19%  Similarity=0.440  Sum_probs=44.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      --.|+..|+-+|+++....|.+||..||.+++.|+...|+++|.+++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            446999999999999999999999999999999999999999988765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.99  E-value=0.07  Score=42.87  Aligned_cols=50  Identities=34%  Similarity=0.557  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----C-------------chHHHHHhc-----CCCCHHHHHHHHHHhhHHHh
Q 044021          237 KEAWSEEEDMILIQAHKEVG----N-------------RWAEIARRL-----IGRTENTIKNHWNATKRRQQ  286 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G----~-------------kW~~IAk~l-----~gRT~~qcr~Rw~~llrr~~  286 (440)
                      +..||.+|...|++++.+|.    +             .|..|+..|     +.||..+|+.+|..+.....
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K   73 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK   73 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            45799999999999998863    1             299999876     25999999999998876643

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.51  E-value=0.022  Score=53.60  Aligned_cols=49  Identities=22%  Similarity=0.519  Sum_probs=39.6

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCC------hHHHHHHhcCCccccccchhccccc
Q 044021          183 IIKGQWTPQEDRMLIRLVAQHGTKK------WSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       183 ikKG~WT~EED~~Ll~lV~k~G~~n------W~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      .++..||.|||.+|.+.|-+|+...      ...++..| +|++.+|..||..+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            3577899999999999999885432      56666777 8999999999977665

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=94.25  E-value=0.1  Score=46.40  Aligned_cols=52  Identities=27%  Similarity=0.400  Sum_probs=41.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----chHHHHH------------hcCCCCHHHHHHHHHHhhHHH
Q 044021          234 DIKKEAWSEEEDMILIQAHKEVGN----RWAEIAR------------RLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       234 ~ikk~~WT~EED~~Ll~lv~k~G~----kW~~IAk------------~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      ..++..||++||.-|+-.+.+||-    .|..|-.            .+..||+..|..|.+.+++--
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            456789999999999999999995    6999876            245799999999999988754

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.09  E-value=0.68  Score=38.17  Aligned_cols=46  Identities=30%  Similarity=0.622  Sum_probs=35.9

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------chHHHHHhcC-----CCCHHHHHHHHHHhhHH
Q 044021          239 AWSEEEDMILIQAHKEV---GN----------RWAEIARRLI-----GRTENTIKNHWNATKRR  284 (440)
Q Consensus       239 ~WT~EED~~Ll~lv~k~---G~----------kW~~IAk~l~-----gRT~~qcr~Rw~~llrr  284 (440)
                      .||+++++.|++++.+.   |+          .|..|+..|.     ..+..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999998653   21          2999998762     36889999999877654

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=90.54  E-value=1.2  Score=47.76  Aligned_cols=52  Identities=17%  Similarity=0.324  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021          236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQS  287 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~s  287 (440)
                      -...||.||--++-++...||..+.+|.+.||.|+-.++...|+...+.+..
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~  237 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREY  237 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhH
Confidence            3568999999999999999999999999999999999999999887766543

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=90.32  E-value=0.52  Score=48.32  Aligned_cols=51  Identities=31%  Similarity=0.606  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CCchHHHHHhcC----CCCHHHHHHHHHHhhHHHhh
Q 044021          237 KEAWSEEEDMILIQAHKEV----------GNRWAEIARRLI----GRTENTIKNHWNATKRRQQS  287 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~----------G~kW~~IAk~l~----gRT~~qcr~Rw~~llrr~~s  287 (440)
                      ...|+.+|-..||++..+.          +.-|..||+.+.    -||+.+|+.||..+.++-.+
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~  118 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK  118 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            4689999999999998643          234999999652    49999999999998877544

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=88.61  E-value=0.7  Score=48.44  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          238 EAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       238 ~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      .+||.+|-+++..++..+|..+..||..||.|...||+.+|..--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            47999999999999999999999999999999999999999765444

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=88.23  E-value=0.46  Score=42.20  Aligned_cols=48  Identities=23%  Similarity=0.431  Sum_probs=37.0

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCC---CChHHHHHHh------------cCCccccccchhcc
Q 044021          182 NIIKGQWTPQEDRMLIRLVAQHGT---KKWSVIAKAM------------TGRVGKQCRERWYN  229 (440)
Q Consensus       182 ~ikKG~WT~EED~~Ll~lV~k~G~---~nW~~IA~~l------------pgRt~~QCr~Rw~~  229 (440)
                      +.++..||.+||.-|+-.+.+||.   +.|..|...+            ..||+..+..|-..
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~t  108 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNT  108 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHH
Confidence            667789999999999999999999   7899998865            24777777776644

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=87.97  E-value=0.44  Score=49.91  Aligned_cols=44  Identities=20%  Similarity=0.417  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021          186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH  230 (440)
Q Consensus       186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~  230 (440)
                      -+||.+|-+++.++....|.. +..||..+|.|..+|++.+|.+-
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtd-F~LIs~lfP~R~RkqIKaKfi~E  409 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTD-FSLISSLFPNRERKQIKAKFIKE  409 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcch-HHHHHHhcCchhHHHHHHHHHHH
Confidence            489999999999999999987 99999999999999999998663

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=87.44  E-value=0.46  Score=48.71  Aligned_cols=47  Identities=30%  Similarity=0.533  Sum_probs=37.2

Q ss_pred             CCCCHHHHHHHHHHHHHh------C---CCChHHHHHHh----cCCccccccchhccccc
Q 044021          186 GQWTPQEDRMLIRLVAQH------G---TKKWSVIAKAM----TGRVGKQCRERWYNHLK  232 (440)
Q Consensus       186 G~WT~EED~~Ll~lV~k~------G---~~nW~~IA~~l----pgRt~~QCr~Rw~~~L~  232 (440)
                      ..|+.+|...|+++....      +   ..-|..||..+    .-|++.||+.+|.++..
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k  114 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKK  114 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            579999999999998654      1   11399999966    45999999999977643

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=86.45  E-value=0.54  Score=49.42  Aligned_cols=51  Identities=27%  Similarity=0.384  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHh-----cCC-CCHHHHHHHHHHhhHHHhh
Q 044021          237 KEAWSEEEDMILIQAHKEVGNRWAEIARR-----LIG-RTENTIKNHWNATKRRQQS  287 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~-----l~g-RT~~qcr~Rw~~llrr~~s  287 (440)
                      -..||.+|-.-|.++++.|.-+|-.|+.+     ++. ||-..++.||+...|...+
T Consensus       130 dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~k  186 (445)
T KOG2656|consen  130 DNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLK  186 (445)
T ss_pred             cccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999999999987     554 9999999999988776543

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=84.48  E-value=1.2  Score=36.70  Aligned_cols=43  Identities=30%  Similarity=0.752  Sum_probs=32.5

Q ss_pred             CCCHHHHHHHHHHHHHh---CCC---------ChHHHHHHhc-----CCccccccchhcc
Q 044021          187 QWTPQEDRMLIRLVAQH---GTK---------KWSVIAKAMT-----GRVGKQCRERWYN  229 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~---G~~---------nW~~IA~~lp-----gRt~~QCr~Rw~~  229 (440)
                      .||+++++.|++++...   |..         .|..|+..|.     ..+..||+.||..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~   60 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT   60 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence            59999999999998655   222         2999999883     2456788888854

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=83.19  E-value=1.7  Score=36.26  Aligned_cols=31  Identities=39%  Similarity=0.753  Sum_probs=18.9

Q ss_pred             CCCCcCCCCHHHHHHH--------HHHHHHhCCCChHHHHHH
Q 044021          181 NNIIKGQWTPQEDRML--------IRLVAQHGTKKWSVIAKA  214 (440)
Q Consensus       181 p~ikKG~WT~EED~~L--------l~lV~k~G~~nW~~IA~~  214 (440)
                      |.-..|-||+|+|+.|        .+++++||   |..|+..
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R   81 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERR   81 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence            5567899999999999        56667777   6666654

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=82.70  E-value=3.5  Score=30.46  Aligned_cols=42  Identities=26%  Similarity=0.354  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       242 ~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      +++++.++.++-..|-.|.+||..+ |.|...++.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4677888888888999999999999 99999999998766543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	440
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		2e-36
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		2e-36
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-36
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		6e-35
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		2e-33
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		3e-19
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-19
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		3e-16
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		5e-15
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		5e-15
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-14
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		2e-14
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-14
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		7e-06
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		2e-05
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		2e-05

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 87/103 (84%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 87/103 (84%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 87/103 (84%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 88/104 (84%)
Query: 182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWS 241
           +++KG WT +ED+ +I LV ++GTK+W++IAK + GR+GKQCRERW+NHL P++KK +W+
Sbjct: 4   DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EEED I+ +AHK +GNRWAEIA+ L GRT+N +KNHWN+T +R+
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 82/101 (81%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEE 244
           KG WT +ED+ +I  V ++G K+WS IAK + GR+GKQCRERW+NHL P++KK +W+EEE
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 245 DMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           D I+ QAHK +GNRWAEIA+ L GRT+N +KNHWN+T RR+
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 71/112 (63%)
Query: 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEE 243
           +KG +T  ED ++   V ++G + W  I   +  R  KQCRERW+NHL P + K AW+ E
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQL 295
           ED  + + + ++G++W+ IA+ + GRT+N IKN WN++  ++ S  +  K++
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEE 244
           K ++TP+ED ML R VAQHG+  W +IA     R  +QCR+RW N+L P I    W+ EE
Sbjct: 11  KQKFTPEEDEMLKRAVAQHGSD-WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 245 DMILIQAHKEVGNRWAEIARRLIGRTENTIKNHW 278
           D +L+Q  +E G +WA IA+   GRT+  IKN W
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 63/99 (63%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEE 244
           K ++T +ED  L +LV ++G K W  I++ M  R  +QCRERW N++ P ++ + WS EE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 245 DMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR 283
           DM+L Q + E G +W +I++ L  R++N I+N W    R
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIAR 99

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 44/52 (84%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
           +IKG WT +ED+ LI+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 234 DIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           ++KK +W+EEED IL QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
           +IKG WT +ED+ +I+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P+
Sbjct: 1   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 235 IKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           +KK +W+EEED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
           +IKG WT +ED+ +I LV ++G K+WSVIAK + GR+GKQCRERW+NHL P+
Sbjct: 1   LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 188 WTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWS 241
           W   ED +L   V ++G  +WS IA  +  +  KQC+ RWY  L P IKK  WS
Sbjct: 12  WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
           K +WT +ED  L +LV Q+GT  W VIA  +  R   QC+ RW   L P+
Sbjct: 3   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
           K +WT +ED  L +LV Q+GT  W VIA  +  R   QC+ RW   L P+
Sbjct: 3   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	4e-65
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-64
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	9e-64
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	4e-63
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	6e-62
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-61
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-15
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-05
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-32
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-07
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-29
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	3e-05
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-28
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	8e-07
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-25
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	1e-05
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-17
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-13
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-05
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-12
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	4e-12
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	5e-12
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	4e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-11
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	8e-06
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-11
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	8e-08
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	7e-11
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	5e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	6e-10
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-05
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	2e-07
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	2e-07
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	5e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	7e-07
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	2e-05
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	7e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	3e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	7e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	8e-06
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	5e-05
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	9e-05
2cjj_A	93	Radialis; plant development, DNA-binding protein,	6e-04

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  203 bits (520), Expect = 4e-65
 Identities = 62/104 (59%), Positives = 83/104 (79%)

Query: 182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWS 241
            + KG WT +ED+ +I  V ++G K+WS IAK + GR+GKQCRERW+NHL P++KK +W+
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 83

Query: 242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EEED I+ QAHK +GNRWAEIA+ L GRT+N +KNHWN+T RR+
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  201 bits (514), Expect = 2e-64
 Identities = 66/103 (64%), Positives = 87/103 (84%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE 242
           +IKG WT +ED+ +I+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+E
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61

Query: 243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  200 bits (511), Expect = 9e-64
 Identities = 42/114 (36%), Positives = 71/114 (62%)

Query: 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEE 243
           +KG +T  ED ++   V ++G + W  I   +  R  KQCRERW+NHL P + K AW+ E
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 244 EDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQE 297
           ED  + + + ++G++W+ IA+ + GRT+N IKN WN++  ++ S  +  K++  
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILL 114

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  198 bits (505), Expect = 4e-63
 Identities = 40/107 (37%), Positives = 66/107 (61%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEE 244
           K ++T +ED  L +LV ++G K W  I++ M  R  +QCRERW N++ P ++ + WS EE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 245 DMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNT 291
           DM+L Q + E G +W +I++ L  R++N I+N W    R +   + +
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQKS 107

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  195 bits (499), Expect = 6e-62
 Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEA 239
                K ++TP+ED ML R VAQHG+  W +IA     R  +QCR+RW N+L P I    
Sbjct: 6   LKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFPNRNARQCRDRWKNYLAPSISHTP 64

Query: 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQEN 298
           W+ EED +L+Q  +E G +WA IA+   GRT+  IKN W     +    +  +     +
Sbjct: 65  WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHHH 123

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  194 bits (496), Expect = 4e-61
 Identities = 66/104 (63%), Positives = 87/104 (83%)

Query: 182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWS 241
            +IKG WT +ED+ +I+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P++KK +W+
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114

Query: 242 EEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
           EEED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T RR+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI 235
            + K  WT +EDR++ +   + G + W+ IAK + GR     +  W + ++  +
Sbjct: 107 EVKKTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 235 IKKEAWSEEEDMILIQAHKEVGNR-WAEIARRLIGRTENTIKNHW 278
           + K  W+ EED  L +  ++ G   W  IA  L  RT+   ++ W
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 48

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  116 bits (294), Expect = 1e-32
 Identities = 24/67 (35%), Positives = 33/67 (49%)

Query: 178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKK 237
              ++   G W   ED +L   V ++G  +WS IA  +  +  KQC+ RWY  L P IKK
Sbjct: 2   SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61

Query: 238 EAWSEEE 244
             WS   
Sbjct: 62  TEWSGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 233 PDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRT 270
              K   W   ED IL  A  + G N+W+ IA  L  ++
Sbjct: 5   SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKS 43

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  107 bits (271), Expect = 2e-29
 Identities = 33/52 (63%), Positives = 44/52 (84%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
           +IKG WT +ED+ LI+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 235 IKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRT 270
           + K  W++EED  LI+  ++ G  RW+ IA+ L GR 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score =  105 bits (264), Expect = 2e-28
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
           + K +WT +ED  L +LV Q+GT  W VIA  +  R   QC+ RW   L P+
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 44.9 bits (107), Expect = 8e-07
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 235 IKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWN 279
           + K  W+ EED  L +  ++ G + W  IA  L  RT+   ++ W 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 46

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 97.7 bits (244), Expect = 1e-25
 Identities = 18/56 (32%), Positives = 25/56 (44%)

Query: 181 NNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIK 236
            +  K +WT +ED  L  LV Q G + W  +A     R  +QC+ RW   L     
Sbjct: 4   GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 235 IKKEAWSEEEDMILIQAHKEVGNR-WAEIARRLIGRTENTIKNHWN 279
             K  W+ EED  L    ++ G + W  +A     RT+   +  W 
Sbjct: 6   SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWL 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 74.5 bits (183), Expect = 4e-17
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 181 NNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAW 240
           ++  K +W+ +E+  L+ L     T+ W  IA  + GR   QC E +   L    ++++ 
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQ-WRTIAPII-GRTAAQCLEHYEFLLDKAAQRDSG 62

Query: 241 SEE 243
              
Sbjct: 63  PSS 65

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 235 IKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQ 294
            KK  WS EE+  L+   K +  +W  IA  +IGRT      H+     +   + +    
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIA-PIIGRTAAQCLEHYEFLLDKAAQRDSGPSS 65

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAK--AMTGRVGKQCRERWYNHLK 232
           +  W  +ED+ L   V ++G   WS I        R     ++RW    K
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 236 KKEAWSEEEDMILIQAHKEVGN-RWAEIAR--RLIGRTENTIKNHW-NATKRR 284
           K++AW  EED  L    ++ G   W++I    +   RT   +K+ W    K +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 11/77 (14%)

Query: 170 PVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM--TGRVGKQCRERW 227
           P K   +        +  W  +ED+ L   V ++G   WS I        R     ++RW
Sbjct: 2   PEKHRAR-------KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 54

Query: 228 YNHLKPDIKKEAWSEEE 244
               K  +       E+
Sbjct: 55  RTMKKLKLIS--SDSED 69

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 236 KKEAWSEEEDMILIQAHKEVGN-RWAEIAR--RLIGRTENTIKNHWNATKRRQQSKRNT 291
           K++AW  EED  L    ++ G   W++I    +   RT   +K+ W   K+ +    ++
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 65.0 bits (157), Expect = 4e-12
 Identities = 24/186 (12%), Positives = 65/186 (34%), Gaps = 15/186 (8%)

Query: 185 KGQWTPQEDRMLIRLVAQHGT-----KKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEA 239
           K  +T +ED  ++ +V ++ T       +  I+  +    G   R R+  +L   ++   
Sbjct: 8   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 67

Query: 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQENY 299
             ++   ++       GN               +IK  ++A +    +    ++  ++ +
Sbjct: 68  EVDKFGKLVRDDD---GNLIK------TKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLF 118

Query: 300 IKNVTARKNNKSNKGINAAPDQDNSANFDAAVVNADNNMMMMPTSSQSQLGITSNFASSL 359
             +    ++  +++    A  + N       V  ++ N     T S+ +  I   F    
Sbjct: 119 QIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSR-RGPIAREFFKHF 177

Query: 360 VDQWPQ 365
            ++   
Sbjct: 178 AEEHAA 183

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 59.7 bits (145), Expect = 5e-12
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHL 231
              WT QE+  L+  V   G   W  +A  M  +  ++C + +  + 
Sbjct: 8   DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 236 KKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWN 279
              +W+ +E+M L++A  + G   W ++A ++  +T+   + H+ 
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 51

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKA--MTGRVGKQCRERWYNHLKPDI 235
           K +WT +E   +   V ++G   W+ I+K      R     ++RW    +  +
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 236 KKEAWSEEEDMILIQAHKEVGN-RWAEIARR--LIGRTENTIKNHW 278
           KK+ W+ EE   +    ++ G   WA I++    + RT   IK+ W
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 46

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 58.0 bits (140), Expect = 4e-11
 Identities = 19/85 (22%), Positives = 37/85 (43%)

Query: 226 RWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ 285
             ++  + ++  + W+EEE     +   E G  W+ IAR +  +T +  KN +   K+RQ
Sbjct: 5   HHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64

Query: 286 QSKRNTRKQLQENYIKNVTARKNNK 310
                 ++   +   +    RK  K
Sbjct: 65  NLDEILQQHKLKMEKERNARRKKKK 89

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 48.8 bits (116), Expect = 8e-08
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 174 ERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKP 233
                 + N+    WT +E     + + +HG + WS IA+ +  +   QC+  ++N+ K 
Sbjct: 5   HHHSSGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNYKKR 63

Query: 234 DIKKEAWSEEE 244
               E   + +
Sbjct: 64  QNLDEILQQHK 74

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAK--AMTGRVGKQCRERWYNHLKPDI 235
           K +WT +E   +   V ++G   W+ I+K      R     ++RW    +  +
Sbjct: 11  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 236 KKEAWSEEEDMILIQAHKEVGN-RWAEIARR--LIGRTENTIKNHW 278
           KK+ W+ EE   +    ++ G   WA I++    + RT   IK+ W
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 54.6 bits (131), Expect = 6e-10
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 165 RNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCR 224
            +     +         N   G++TP+E   L  L  +HG   W+ I  A+ GR     +
Sbjct: 4   HHHHSSGRENLYFQGDRNH-VGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVK 60

Query: 225 ERW 227
           +R 
Sbjct: 61  DRC 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQS 287
           ++ EE   L +   + GN WA I    +GR+ +++K+     K    +
Sbjct: 26  YTPEEIEKLKELRIKHGNDWATIG-AALGRSASSVKDRCRLMKDTCNT 72

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM-TGRVGKQCRERWYNH 230
              ++     W   E+ +LI      G   W+ IA  +   R  ++CR+ +   
Sbjct: 2   SSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 178 PKKNNIIKGQWTPQEDRMLIRLVAQH---GTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
            ++    +  WT  + ++L   + Q+    +  W  IA+ +  +  + C  R Y  L   
Sbjct: 11  KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIAR-YKLLVSG 69

Query: 235 IKK 237
              
Sbjct: 70  PSS 72

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 232 KPDIKKEAWSEEEDMILIQA----HKEVGNRWAEIARRLIGRTENTIKNHWN 279
           +    +E W++ +  +L  A     +   + W +IAR +  +++      + 
Sbjct: 13  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 64

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK 232
             +WT +E  +  + +A+ G ++W+ I+K +  R   Q +     + K
Sbjct: 9   SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFK 55

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 232 KPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATK-RRQQSKRN 290
                   W+ EE  +  Q   + G RW +I++ +  RT   +K++  A +  + + K  
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSY--ARQYFKNKVKCG 61

Query: 291 TRKQLQE 297
             K+   
Sbjct: 62  LDKETPN 68

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 169 IPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCR 224
           +P+ R ++       I+  +T  E  +L+  V   GT +W  +          R     +
Sbjct: 15  VPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLK 74

Query: 225 ERWYNHLKP 233
           ++W   +  
Sbjct: 75  DKWKTLVHT 83

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH 230
            K      +WT QE  +L+  +  +    W+ +++ +  R   +C   +   
Sbjct: 12  SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 42.9 bits (101), Expect = 7e-06
 Identities = 10/48 (20%), Positives = 25/48 (52%)

Query: 231 LKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHW 278
            K       W+E+E ++L++A +   + W +++  +  RT++    H+
Sbjct: 12  SKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 175 RKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCRERWYN- 229
             L      I+  ++  E   L++ V + GT +W  +          R     +++W   
Sbjct: 3   HMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62

Query: 230 ----HLKPDIKKEAWSEEEDMI-LIQAHKEVGNRWAEIARR 265
                + P  ++     +E +  ++ AH     +  +  ++
Sbjct: 63  VHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 236 KKEAWSEEEDMILIQAHKEVGN-RWAEIARR----LIGRTENTIKNHWNATKRRQQSKRN 290
            +  +S  E   L+QA +++G  RW ++          RT   +K+ W       +    
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 291 TRK 293
            R+
Sbjct: 72  QRR 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 52/414 (12%), Positives = 110/414 (26%), Gaps = 108/414 (26%)

Query: 3   LDSSFRDDNPFI-SSLFSDNLFKSDLGNGFSSLENPSSKVSPLFQILTILIDLPSKDPQK 61
           ++   R +  F+ S + ++    S +   +    +     + +F    +         + 
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--------SRL 134

Query: 62  DPPLGIST--MSFDPLKGYS-NGFLGT-ESAYTATPLVLNSTNDVLHGPERRGFWDYSQN 117
            P L +    +   P K    +G LG+ ++       V  S   V    + + FW    N
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--DVCLS-YKVQCKMDFKIFW---LN 188

Query: 118 FSAHPKPETPNFQPILMNFQDYESSSAKLPDEVSCVTGENAYNQDQKRNKRIPVKRERKL 177
                 PET     +L   Q       KL         +  +      +  I ++     
Sbjct: 189 LKNCNSPET-----VLEMLQ-------KL-----LYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 178 PKKNNIIKGQWTPQEDRMLIRL--VAQHGTKKWSV-IAKAMTGRVGKQCR---------- 224
            +   ++K +        L+ L  V        +     A        C+          
Sbjct: 232 AELRRLLKSKPYE---NCLLVLLNV-------QNAKAWNAFNL----SCKILLTTRFKQV 277

Query: 225 -----ERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARR----------LIGR 269
                     H+  D      + +E   L+   K +  R  ++ R           +I  
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 270 TENTIKNHWNATKRRQQSKRNTRKQLQENYIKNVTARKNNKSNKGINAAPDQDNSANFDA 329
           +       W                  +N+      +        +N     +    FD 
Sbjct: 336 SIRDGLATW------------------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 330 -AVVNADNNMMMM--------PTSSQSQLGITSNFASSLVDQWPQVPVYG-HHI 373
            +V     ++  +           S   + +      SLV++ P+        I
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 44/291 (15%), Positives = 82/291 (28%), Gaps = 100/291 (34%)

Query: 233 PDIKKEAWSEEE-DMILIQAHKEVGNR---W------AEIARRLIGRTENTIKNH-WNAT 281
            D+ K   S+EE D I++      G     W       E+ ++ +        N+ +  +
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKFLMS 96

Query: 282 KRRQQSKR---------NTRKQLQEN---YIK-NVT----------ARKNNKSNKGI--- 315
             + + ++           R +L  +   + K NV+          A    +  K +   
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 316 ------------NAAPDQDNSANFDAAV-------VNADNNMMMMPTSSQSQLGITSNFA 356
                       +           D  +        N+   ++ M      Q  I  N+ 
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNW- 213

Query: 357 SSLVDQWPQVPVYGHHIEAAIGRL----SYENG-------------GGYNFG-------- 391
           +S  D    + +  H I+A + RL     YEN                +N          
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 392 -SSVLDEMPSAGSTVES------NFE-------FELALEIDSNYMPEEVKR 428
              V D + +A +T  S                    L+     +P EV  
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 44.4 bits (104), Expect = 7e-06
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 170 PVKRERKLPKKNNI-IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCR 224
           PV ++ K  + +   I+  ++  E   L+  V   GT +W  +          R     +
Sbjct: 1   PVNQKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLK 60

Query: 225 ERWYNHLK 232
           ++W   + 
Sbjct: 61  DKWKTLVH 68

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 188 WTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCRERWYNHLK 232
           ++  E   L+  V   GT +W  +          R     +++W   + 
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235

 Score = 43.6 bits (101), Expect = 5e-05
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQ 296
              W+ EE ++ +QA ++ G  +  I+  +  ++   +KN +   +RR     N  + LQ
Sbjct: 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF----NIDEVLQ 188

Query: 297 ENYIKNVTARKNNKSNKGINAAPDQDNSA 325
           E   ++     N  SN+    +PD     
Sbjct: 189 EWEAEHGKEETNGPSNQKPVKSPDNSIKM 217

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 40.3 bits (94), Expect = 9e-05
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 142 SSAKLPDEVSCVTGENAYNQDQKRNKRI--PVKRERKLPKKNNIIKGQWTPQEDRMLIRL 199
             A +P  +     +    +    N  +  P+K  +     N      W+ QE       
Sbjct: 5   QLAVIPPMLY--DADQQRIKFINMNGLMADPMKVYKDRQVMNM-----WSEQEKETFREK 57

Query: 200 VAQHGTKKWSVIAKAMTGRVGKQCRERWY 228
             QH  K + +IA  +  +   +C   +Y
Sbjct: 58  FMQHP-KNFGLIASFLERKTVAECVLYYY 85

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 187 QWTPQEDRMLIRLVAQHGTK---KWSVIAKAMTGRVGKQCRERWYNHLKPDIK 236
            W+ +E++   R +A +      +W+ +A+A+ GR  ++ ++  Y  L  DIK
Sbjct: 10  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKH-YEILVEDIK 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.98
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.98
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.81
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.76
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.7
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.68
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.67
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.67
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.66
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.66
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.65
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.64
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.6
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.6
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.6
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.59
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.58
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.57
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.57
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.57
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.55
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.55
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.53
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.53
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.53
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.5
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.5
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.5
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.49
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.49
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.49
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.45
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.44
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.43
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.39
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.38
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.37
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.29
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.29
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.27
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.18
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.17
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.12
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.11
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.07
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.07
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.06
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.05
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.92
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.84
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.8
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.77
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.75
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.71
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.7
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.64
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.49
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.47
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.39
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.34
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.33
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.22
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.13
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.11
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.93
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.92
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.76
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.74
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.88
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.67
2crg_A	70	Metastasis associated protein MTA3; transcription	97.67
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.66
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.61
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.45
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.27
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.2
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.28
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.16
2crg_A	70	Metastasis associated protein MTA3; transcription	97.12
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.02
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.96
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.47
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.86
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.68
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.07
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	89.52
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.16
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	86.7

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=3.6e-35  Score=257.58  Aligned_cols=123  Identities=51%  Similarity=0.933  Sum_probs=103.5

Q ss_pred             hhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCH
Q 044021          163 QKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSE  242 (440)
Q Consensus       163 ~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~  242 (440)
                      +..++..+|+.||.++++|.+++|+||+|||++|+++|++||..+|..||..|+||++.||++||.++|+|.+++++||+
T Consensus         5 ~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~   84 (128)
T 1h8a_C            5 IKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE   84 (128)
T ss_dssp             -----------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCH
T ss_pred             cCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCH
Confidence            45677889999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021          243 EEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       243 EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      |||.+|+++|.+||++|+.||+.|||||+.+|++||+.+++++
T Consensus        85 eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999998874

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=3.1e-33  Score=253.47  Aligned_cols=130  Identities=51%  Similarity=0.914  Sum_probs=113.3

Q ss_pred             CCcchHHhhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC
Q 044021          156 ENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI  235 (440)
Q Consensus       156 ~N~~~q~~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i  235 (440)
                      +..+++....++..+|+.||.++++|.+++|+||+|||++|+++|.+||..+|..||..|+||++.||++||.++|+|.+
T Consensus        29 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~  108 (159)
T 1h89_C           29 WKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEV  108 (159)
T ss_dssp             --------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccc
Confidence            55555556678889999999999999999999999999999999999998789999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021          236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      ++++||+|||.+|++++.+||++|+.||+.|||||+++|++||+.+++++
T Consensus       109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999998875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.98  E-value=9.8e-33  Score=235.47  Aligned_cols=105  Identities=38%  Similarity=0.724  Sum_probs=101.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHH
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIAR  264 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk  264 (440)
                      ||+||+|||++|+++|.+||..+|..||..|+||+++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            68999999999999999999888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHhhHHHhhhh
Q 044021          265 RLIGRTENTIKNHWNATKRRQQSKR  289 (440)
Q Consensus       265 ~l~gRT~~qcr~Rw~~llrr~~sk~  289 (440)
                      .|+|||+++|++||+.++++..+..
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~~~  105 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAKHQ  105 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHHhh
Confidence            9999999999999999998876544

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.98  E-value=1.1e-32  Score=233.62  Aligned_cols=104  Identities=63%  Similarity=1.171  Sum_probs=99.6

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHH
Q 044021          182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAE  261 (440)
Q Consensus       182 ~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~  261 (440)
                      .+++|+||+|||++|+++|++||..+|..||..|+||++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            36899999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHhhHHH
Q 044021          262 IARRLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       262 IAk~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      ||+.|||||+.+|++||+.+++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999998875

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=1.3e-31  Score=234.94  Aligned_cols=105  Identities=43%  Similarity=0.794  Sum_probs=100.5

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 044021          180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRW  259 (440)
Q Consensus       180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW  259 (440)
                      ++..+||+||+|||++|+++|++||. +|..||..|+||+++||++||.++|+|.+++++||+|||.+|+++|.+||.+|
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W   84 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW   84 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            45678999999999999999999998 69999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021          260 AEIARRLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       260 ~~IAk~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      +.||+.|+|||+.+|++||+.++++.
T Consensus        85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           85 AIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999988774

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=8.2e-32  Score=237.44  Aligned_cols=106  Identities=39%  Similarity=0.810  Sum_probs=101.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHH
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIA  263 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IA  263 (440)
                      .||+||+|||++|+++|.+||..+|..||..|+||++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            37999999999999999999988899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHhhHHHhhhh
Q 044021          264 RRLIGRTENTIKNHWNATKRRQQSKR  289 (440)
Q Consensus       264 k~l~gRT~~qcr~Rw~~llrr~~sk~  289 (440)
                      +.|+|||+++|++||+.++++..+..
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~  106 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTN  106 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999998876543

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=5e-29  Score=225.77  Aligned_cols=120  Identities=32%  Similarity=0.626  Sum_probs=70.9

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-chH
Q 044021          182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGN-RWA  260 (440)
Q Consensus       182 ~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~-kW~  260 (440)
                      .+.+|+||+|||++|+++|++||..+|..||..|+||++.||++||.++|+|.+++++||+|||.+|+++|.+||. +|.
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            3578999999999999999999988899999999999999999999999999999999999999999999999996 699


Q ss_pred             HHHHhcCCCCHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHh
Q 044021          261 EIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQENYIK  301 (440)
Q Consensus       261 ~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k~~~~~~~~~i~  301 (440)
                      .||+.|+|||+.||++||..++.+..++...+.......+.
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~  123 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ  123 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence            99999999999999999999998877766666544333333

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=2.4e-21  Score=153.39  Aligned_cols=66  Identities=36%  Similarity=0.720  Sum_probs=63.6

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHH
Q 044021          180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEED  245 (440)
Q Consensus       180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED  245 (440)
                      .+.+++|+||+|||++|+++|.+||..+|..||..|+||+++||++||.++|+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            467899999999999999999999987899999999999999999999999999999999999998

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.81  E-value=1.6e-20  Score=164.37  Aligned_cols=91  Identities=25%  Similarity=0.582  Sum_probs=61.2

Q ss_pred             HHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHHhhhh
Q 044021          211 IAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQQSKR  289 (440)
Q Consensus       211 IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~  289 (440)
                      ||+.|+||++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||..++.+..+++
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~   80 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT   80 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence            79999999999999999999999999999999999999999999996 69999999999999999999999998877777


Q ss_pred             hhhhHHHHHHHh
Q 044021          290 NTRKQLQENYIK  301 (440)
Q Consensus       290 k~~~~~~~~~i~  301 (440)
                      ..+.......+.
T Consensus        81 ~WT~eEd~~L~~   92 (128)
T 1h8a_C           81 SWTEEEDRIIYQ   92 (128)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             cCCHHHHHHHHH
Confidence            666554443333

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.76  E-value=7.7e-19  Score=168.37  Aligned_cols=105  Identities=22%  Similarity=0.344  Sum_probs=93.3

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCC-----hHHHHHHhcCCccccccchhcccccCCCC-------------------
Q 044021          181 NNIIKGQWTPQEDRMLIRLVAQHGTKK-----WSVIAKAMTGRVGKQCRERWYNHLKPDIK-------------------  236 (440)
Q Consensus       181 p~ikKG~WT~EED~~Ll~lV~k~G~~n-----W~~IA~~lpgRt~~QCr~Rw~~~L~p~ik-------------------  236 (440)
                      +.++|++||+|||++|+++|+++|.++     |..||+.|+|||+.|||+||+.+|.+.+.                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            456789999999999999999998754     99999999999999999999999999986                   


Q ss_pred             ----------CCCCCHHHHHHHHHHHHH-h--------------------------------------------------
Q 044021          237 ----------KEAWSEEEDMILIQAHKE-V--------------------------------------------------  255 (440)
Q Consensus       237 ----------k~~WT~EED~~Ll~lv~k-~--------------------------------------------------  255 (440)
                                +..||.+||..|...+.+ |                                                  
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      889999999999999987 2                                                  


Q ss_pred             ---CC----chHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021          256 ---GN----RWAEIARRLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       256 ---G~----kW~~IAk~l~gRT~~qcr~Rw~~llrr~  285 (440)
                         |.    .|..||+.+|+||..++|+||..+++..
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence               11    6999999999999999999999998765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.70  E-value=1.1e-17  Score=146.14  Aligned_cols=85  Identities=14%  Similarity=0.246  Sum_probs=79.3

Q ss_pred             cCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----cCCccccccchhccccc-----CCCCCC-CCCHHHHH
Q 044021          177 LPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCRERWYNHLK-----PDIKKE-AWSEEEDM  246 (440)
Q Consensus       177 ~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l----pgRt~~QCr~Rw~~~L~-----p~ikk~-~WT~EED~  246 (440)
                      ..+.+..++++||+|||+.|+++|++||.++|..|+..+    ++||..||++||+++++     |.++++ +|+++|+.
T Consensus         9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~   88 (121)
T 2juh_A            9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLD   88 (121)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHH
T ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHH
Confidence            446678889999999999999999999998899999985    89999999999999998     999998 99999999


Q ss_pred             HHHHHHHHhCCchHH
Q 044021          247 ILIQAHKEVGNRWAE  261 (440)
Q Consensus       247 ~Ll~lv~k~G~kW~~  261 (440)
                      +|++++..+|++|.+
T Consensus        89 rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           89 RVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHccchhc
Confidence            999999999999976

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=2.6e-17  Score=126.34  Aligned_cols=57  Identities=32%  Similarity=0.574  Sum_probs=54.0

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCC
Q 044021          180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIK  236 (440)
Q Consensus       180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ik  236 (440)
                      .|.+++++||+|||++|+++|.+||..+|..||..|+|||+.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            477899999999999999999999987799999999999999999999999999875

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.67  E-value=7.9e-17  Score=140.97  Aligned_cols=79  Identities=18%  Similarity=0.255  Sum_probs=72.9

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----cCCccccccchhcccc-----cCCCCCCCCCHHH-HHHHH
Q 044021          180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCRERWYNHL-----KPDIKKEAWSEEE-DMILI  249 (440)
Q Consensus       180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l----pgRt~~QCr~Rw~~~L-----~p~ikk~~WT~EE-D~~Ll  249 (440)
                      ....++++||+|||+.|+++|++||.++|..|+..+    ++||..||++||++++     +|.++++.|+++| +.+|+
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            445578999999999999999999998899999975    8999999999999999     8999999999999 89999


Q ss_pred             HHHHHhCCc
Q 044021          250 QAHKEVGNR  258 (440)
Q Consensus       250 ~lv~k~G~k  258 (440)
                      +++..||++
T Consensus       106 ~~h~~~g~~  114 (122)
T 2roh_A          106 AAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhhH
Confidence            999999974

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.67  E-value=4.9e-17  Score=130.50  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=48.1

Q ss_pred             ccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021          223 CRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       223 Cr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llr  283 (440)
                      ..-||.++|+|.+++++||+|||++|+++|++||++|+.||+.| |||+.+||+||+.+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999 9999999999997654

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.66  E-value=4.7e-17  Score=128.45  Aligned_cols=64  Identities=22%  Similarity=0.306  Sum_probs=59.2

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc--CCccccccchhcccccCCCCCCCCC
Q 044021          178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT--GRVGKQCRERWYNHLKPDIKKEAWS  241 (440)
Q Consensus       178 ~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp--gRt~~QCr~Rw~~~L~p~ikk~~WT  241 (440)
                      .+++..++++||+|||++|+++|++||.++|..||..|+  ||++.||++||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            456777899999999999999999999878999999999  9999999999999999999988764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.66  E-value=3.7e-17  Score=122.05  Aligned_cols=52  Identities=63%  Similarity=1.229  Sum_probs=49.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021          183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD  234 (440)
Q Consensus       183 ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~  234 (440)
                      ++||+||+|||++|+++|.+||.++|..||..|+|||+.||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            5789999999999999999999888999999999999999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.65  E-value=5.2e-17  Score=121.14  Aligned_cols=52  Identities=42%  Similarity=0.827  Sum_probs=48.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021          183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD  234 (440)
Q Consensus       183 ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~  234 (440)
                      +++|+||+|||++|+++|.+||..+|..||..|+|||+.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4689999999999999999999978999999999999999999999999984

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.64  E-value=2.2e-17  Score=145.21  Aligned_cols=106  Identities=22%  Similarity=0.377  Sum_probs=79.9

Q ss_pred             CCcchHHhhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC
Q 044021          156 ENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI  235 (440)
Q Consensus       156 ~N~~~q~~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i  235 (440)
                      |..++..+..++..+|+.||.++++|.+++|+||+|||++|+++|.+||.. |..||..|+|||+.||++||+++|++.+
T Consensus        25 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~-W~~Ia~~l~gRt~~~~k~rw~~~l~~~~  103 (131)
T 3zqc_A           25 WPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSK-WSVIAKLIPGRTDNAIKNRWNSSISKRI  103 (131)
T ss_dssp             GGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSC-HHHHTTTSTTCCHHHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcC-HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            444444455677889999999999999999999999999999999999976 9999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHhc
Q 044021          236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRL  266 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l  266 (440)
                      ..+.|+.+--.    .....+.+|+.|++.|
T Consensus       104 ~~~~~~~~~~~----p~~~kk~~~~~i~k~~  130 (131)
T 3zqc_A          104 STNSNHKEILL----PDRSKKRKAADVPKKL  130 (131)
T ss_dssp             CCCTTSCCCCC----CCCC------------
T ss_pred             hcCCCcccccC----chhhhhhhhhhcchhc
Confidence            99888765310    0112234587777665

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=119.54  Aligned_cols=59  Identities=27%  Similarity=0.437  Sum_probs=55.5

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHhhhh
Q 044021          230 HLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKR  289 (440)
Q Consensus       230 ~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~  289 (440)
                      +|+|.+++++||+|||++|+++|++||.+|..||+ ++|||+.|||+||+.++++..++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            68999999999999999999999999999999999 889999999999999999876543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2.2e-16  Score=123.53  Aligned_cols=59  Identities=25%  Similarity=0.488  Sum_probs=55.3

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCC
Q 044021          178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKE  238 (440)
Q Consensus       178 ~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~  238 (440)
                      +++|.+++++||+|||++|+++|++||. +|..||+ ++|||+.||++||.++|+|.++++
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            6889999999999999999999999998 5999999 889999999999999999887664

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.60  E-value=4.6e-16  Score=121.73  Aligned_cols=54  Identities=22%  Similarity=0.452  Sum_probs=49.5

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc--CCccccccchhcccccCCCC
Q 044021          183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT--GRVGKQCRERWYNHLKPDIK  236 (440)
Q Consensus       183 ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp--gRt~~QCr~Rw~~~L~p~ik  236 (440)
                      .+|++||+|||++|+++|++||.++|..||+.++  |||+.||++||+++++++++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            4688999999999999999999988999999865  99999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.59  E-value=7.3e-16  Score=118.62  Aligned_cols=55  Identities=20%  Similarity=0.431  Sum_probs=51.4

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021          180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD  234 (440)
Q Consensus       180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~  234 (440)
                      .+.+.+++||+|||++|+++|++||..+|..||+.|++||+.||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            3678899999999999999999999878999999999999999999999999865

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.58  E-value=2.1e-15  Score=119.98  Aligned_cols=58  Identities=19%  Similarity=0.247  Sum_probs=54.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHhhh
Q 044021          231 LKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSK  288 (440)
Q Consensus       231 L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk  288 (440)
                      .+|.+++++||+|||++|+++|.+||.+|..||+.|+|||+.|||+||+.++++..+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999999999999999999999999999999887654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.57  E-value=3.4e-16  Score=132.20  Aligned_cols=78  Identities=19%  Similarity=0.406  Sum_probs=68.3

Q ss_pred             CCcchHHhhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021          156 ENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD  234 (440)
Q Consensus       156 ~N~~~q~~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~  234 (440)
                      +..+++....++..+|+.||.++++|.+++|+||+|||++|+++|.+||.. |..||+.|||||+.||+.||+.+++..
T Consensus        27 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~-W~~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           27 WSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSC-HHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCC-HHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            334444455677889999999999999999999999999999999999975 999999999999999999999888653

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.57  E-value=1.5e-15  Score=121.84  Aligned_cols=62  Identities=27%  Similarity=0.444  Sum_probs=47.8

Q ss_pred             cccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCC
Q 044021          171 VKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDI  235 (440)
Q Consensus       171 ~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~i  235 (440)
                      +..+|.++++|.+++|+||+|||++|+++|++||.+ |..||+.| |||+.||++||+. |....
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~~   70 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDTC   70 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCCC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHHc
Confidence            456899999999999999999999999999999987 99999999 9999999999964 54443

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.57  E-value=3.2e-16  Score=133.28  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=69.8

Q ss_pred             CCcchHHhhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021          156 ENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD  234 (440)
Q Consensus       156 ~N~~~q~~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~  234 (440)
                      +..++..+..++..+|+.||.++++|.+++|+||+|||++|+++|.+||.. |..||+.|||||+.||+.||..+++..
T Consensus        24 W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~-W~~Ia~~l~gRt~~~~k~rw~~l~r~~  101 (107)
T 2k9n_A           24 WIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPK-WNKISKFLKNRSDNNIRNRWMMIARHR  101 (107)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSC-HHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcC-HHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence            445555566778889999999999999999999999999999999999985 999999999999999999998877643

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.55  E-value=3.9e-15  Score=114.19  Aligned_cols=55  Identities=22%  Similarity=0.387  Sum_probs=51.2

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021          232 KPDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRRQQ  286 (440)
Q Consensus       232 ~p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~  286 (440)
                      +|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+.++++..
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            4778999999999999999999999 699999999999999999999999987653

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.55  E-value=2.4e-15  Score=112.83  Aligned_cols=49  Identities=27%  Similarity=0.421  Sum_probs=46.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc--CCccccccchhccccc
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT--GRVGKQCRERWYNHLK  232 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp--gRt~~QCr~Rw~~~L~  232 (440)
                      +||+||+|||++|+++|++||.++|..||..|+  |||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            478999999999999999999878999999999  9999999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.53  E-value=4.3e-15  Score=113.74  Aligned_cols=51  Identities=22%  Similarity=0.512  Sum_probs=47.3

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhc-CCccccccchhcccc
Q 044021          181 NNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHL  231 (440)
Q Consensus       181 p~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp-gRt~~QCr~Rw~~~L  231 (440)
                      ..+.+++||+|||++|+++|++||..+|..||+.|+ +||+.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999999888999999999 999999999998875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3e-15  Score=119.74  Aligned_cols=60  Identities=20%  Similarity=0.284  Sum_probs=55.5

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCC-----CChHHHHHHhcCCccccccchhcccccCCCCCCC
Q 044021          180 KNNIIKGQWTPQEDRMLIRLVAQHGT-----KKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEA  239 (440)
Q Consensus       180 kp~ikKG~WT~EED~~Ll~lV~k~G~-----~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~  239 (440)
                      +|.+.+++||+|||++|+++|.+||.     .+|..||..|+|||+.||++||+++|.+.++.+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            57889999999999999999999996     6799999999999999999999999998877664

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.53  E-value=9.3e-15  Score=108.88  Aligned_cols=50  Identities=28%  Similarity=0.508  Sum_probs=46.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          235 IKKEAWSEEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       235 ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      +++++||+|||.+|+++|.+||. +|..||+.|+|||+.||++||+.++++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999997 899999999999999999999998864

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.53  E-value=9.7e-16  Score=133.97  Aligned_cols=76  Identities=21%  Similarity=0.388  Sum_probs=68.4

Q ss_pred             CCcchHHhhhcCCcccccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021          156 ENAYNQDQKRNKRIPVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       156 ~N~~~q~~~r~~~~~~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      |..++.....++..+|+.||.++++|.+++|+||+|||++|+++|.+||.+ |..||+.|+|||..||++||..+++
T Consensus        33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~-W~~Ia~~l~gRt~~~~k~rw~~l~~  108 (126)
T 3osg_A           33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ-WAIIAKFFPGRTDIHIKNRWVTISN  108 (126)
T ss_dssp             HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC-HHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC-HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            445555555678889999999999999999999999999999999999975 9999999999999999999988765

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.50  E-value=2.4e-14  Score=107.37  Aligned_cols=49  Identities=31%  Similarity=0.569  Sum_probs=46.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcC--CCCHHHHHHHHHHhhHH
Q 044021          236 KKEAWSEEEDMILIQAHKEVG-NRWAEIARRLI--GRTENTIKNHWNATKRR  284 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~--gRT~~qcr~Rw~~llrr  284 (440)
                      ++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||..+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999998875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.50  E-value=1.9e-14  Score=107.32  Aligned_cols=50  Identities=32%  Similarity=0.654  Sum_probs=46.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          235 IKKEAWSEEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       235 ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||..++++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 699999999999999999999988754

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.50  E-value=8.2e-15  Score=116.58  Aligned_cols=58  Identities=21%  Similarity=0.320  Sum_probs=53.9

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCC
Q 044021          179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKK  237 (440)
Q Consensus       179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk  237 (440)
                      ..|.+++|+||+|||++|+++|++||. +|..||..|+|||+.||+.||.++|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            468899999999999999999999998 5999999999999999999999999877665

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.8e-14  Score=113.84  Aligned_cols=60  Identities=27%  Similarity=0.375  Sum_probs=54.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHHHhhhhhh
Q 044021          232 KPDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNT  291 (440)
Q Consensus       232 ~p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k~  291 (440)
                      .|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||+.++++..+++..
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~w   64 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEW   64 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCC
Confidence            4678999999999999999999999 79999999999999999999999999887665443

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.49  E-value=3.3e-14  Score=112.09  Aligned_cols=59  Identities=25%  Similarity=0.433  Sum_probs=53.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcC--CCCHHHHHHHHHHhhHHHhhhh
Q 044021          231 LKPDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLI--GRTENTIKNHWNATKRRQQSKR  289 (440)
Q Consensus       231 L~p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~--gRT~~qcr~Rw~~llrr~~sk~  289 (440)
                      ..+..++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||+.++++...+.
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            45677899999999999999999999 69999999999  9999999999999999876543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.49  E-value=4e-14  Score=108.88  Aligned_cols=53  Identities=19%  Similarity=0.477  Sum_probs=49.1

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          232 KPDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       232 ~p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      .+.+.+++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||+.++..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3568899999999999999999999 7999999999999999999999988754

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=6.2e-14  Score=112.04  Aligned_cols=56  Identities=21%  Similarity=0.262  Sum_probs=51.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC------CchHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021          232 KPDIKKEAWSEEEDMILIQAHKEVG------NRWAEIARRLIGRTENTIKNHWNATKRRQQS  287 (440)
Q Consensus       232 ~p~ikk~~WT~EED~~Ll~lv~k~G------~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~s  287 (440)
                      +|.+.+++||+|||++|+++|.+||      .+|..||+.|+|||..||++||+.++++..+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k   64 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK   64 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            4778899999999999999999999      6899999999999999999999988877543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.44  E-value=1.3e-13  Score=107.81  Aligned_cols=51  Identities=31%  Similarity=0.575  Sum_probs=46.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcC--CCCHHHHHHHHHHhhHHH
Q 044021          235 IKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLI--GRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       235 ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~--gRT~~qcr~Rw~~llrr~  285 (440)
                      .++++||+|||++|+++|.+|| ++|+.||+.++  |||+.|||+||+.+++..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4688999999999999999999 58999999976  999999999999998764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.43  E-value=2.2e-13  Score=104.26  Aligned_cols=50  Identities=30%  Similarity=0.586  Sum_probs=45.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcC-CCCHHHHHHHHHHhh
Q 044021          233 PDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLI-GRTENTIKNHWNATK  282 (440)
Q Consensus       233 p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~-gRT~~qcr~Rw~~ll  282 (440)
                      ..+.+++||+|||++|+++|.+|| ++|..||+.|+ |||+.|||+||..+.
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346688999999999999999999 89999999999 999999999998754

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.39  E-value=3.8e-13  Score=110.39  Aligned_cols=69  Identities=16%  Similarity=0.299  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHHH----hcCCccccccchhcccc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 044021          186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKA----MTGRVGKQCRERWYNHL-----KPDIKKE-AWSEEEDMILIQAHKE  254 (440)
Q Consensus       186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~~----lpgRt~~QCr~Rw~~~L-----~p~ikk~-~WT~EED~~Ll~lv~k  254 (440)
                      ++||+|||++|+++|++||.++|..|++.    |+|||+.+|++||++++     +|.++++ +..++....++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999889999996    89999999999999988     5766654 6788888888888764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.38  E-value=2.5e-13  Score=116.06  Aligned_cols=78  Identities=17%  Similarity=0.301  Sum_probs=66.7

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----cCCccccccchhcccc-----cCCCCCCCCCHHHHHH-H
Q 044021          179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCRERWYNHL-----KPDIKKEAWSEEEDMI-L  248 (440)
Q Consensus       179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l----pgRt~~QCr~Rw~~~L-----~p~ikk~~WT~EED~~-L  248 (440)
                      .....++++||+|||++|+++|++||.++|..|+..+    ++||..+|++||++++     +|.++++.-+++|-.. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            3456678999999999999999999998899999965    8999999999999998     6889999888877665 7


Q ss_pred             HHHHHHhC
Q 044021          249 IQAHKEVG  256 (440)
Q Consensus       249 l~lv~k~G  256 (440)
                      ++++..+|
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776665

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.07  E-value=4.1e-14  Score=117.22  Aligned_cols=56  Identities=29%  Similarity=0.399  Sum_probs=53.0

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021          230 HLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       230 ~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      .+.|.+++++||+|||.+|+++|.+||.+|..||+.|+|||+.||++||+.++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            56788999999999999999999999999999999999999999999999988874

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.37  E-value=3.9e-13  Score=109.26  Aligned_cols=52  Identities=17%  Similarity=0.393  Sum_probs=48.1

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021          178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH  230 (440)
Q Consensus       178 ~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~  230 (440)
                      .+.....+++||+|||++|+++|++|| .+|..||++|++||+.||+.||.++
T Consensus        11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            455667789999999999999999999 6799999999999999999999988

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.29  E-value=6.3e-13  Score=106.62  Aligned_cols=54  Identities=17%  Similarity=0.400  Sum_probs=48.4

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhC---CCChHHHHHHhcCCccccccchhccccc
Q 044021          179 KKNNIIKGQWTPQEDRMLIRLVAQHG---TKKWSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       179 kkp~ikKG~WT~EED~~Ll~lV~k~G---~~nW~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      .++.+.+++||+|||++|++++.+||   ..+|..||.+|||||..||+.||.+++.
T Consensus        12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            44667899999999999999999999   3469999999999999999999987664

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.29  E-value=2.7e-12  Score=102.96  Aligned_cols=52  Identities=15%  Similarity=0.337  Sum_probs=47.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          233 PDIKKEAWSEEEDMILIQAHKEVG----NRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       233 p~ikk~~WT~EED~~Ll~lv~k~G----~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      +.+.+++||.+||.+|++++.+||    .+|.+||+.|||||..||++||+.+++-
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            456789999999999999999999    6899999999999999999999988653

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.95  E-value=3e-13  Score=112.07  Aligned_cols=55  Identities=25%  Similarity=0.497  Sum_probs=50.9

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccC
Q 044021          178 PKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKP  233 (440)
Q Consensus       178 ~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p  233 (440)
                      ...|.+.+|+||+|||++|+++|.+||.+ |..||..|+|||+.||++||.++|..
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~-W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRN-WSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            45688899999999999999999999985 99999999999999999999998863

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.27  E-value=3.3e-12  Score=103.76  Aligned_cols=48  Identities=19%  Similarity=0.435  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHh
Q 044021          234 DIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNAT  281 (440)
Q Consensus       234 ~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~l  281 (440)
                      ...+++||+|||.+|+++|.+||++|.+||++|++||+.||+.||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            346789999999999999999999999999999999999999999765

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.18  E-value=2.2e-11  Score=94.52  Aligned_cols=50  Identities=20%  Similarity=0.348  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHH---hcCCCCHHHHHHHHHHhhHHH
Q 044021          236 KKEAWSEEEDMILIQAHKEVGNRWAEIAR---RLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk---~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      ++.+||+|||+.|+++|++||.+|+.|+.   ++++||..++++||+.+.|+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            67899999999999999999999999994   668999999999999988763

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.17  E-value=3.7e-11  Score=98.58  Aligned_cols=49  Identities=24%  Similarity=0.454  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-chHHHHHh----cCCCCHHHHHHHHHHhhHHHh
Q 044021          238 EAWSEEEDMILIQAHKEVGN-RWAEIARR----LIGRTENTIKNHWNATKRRQQ  286 (440)
Q Consensus       238 ~~WT~EED~~Ll~lv~k~G~-kW~~IAk~----l~gRT~~qcr~Rw~~llrr~~  286 (440)
                      ++||+|||+.|+++|++||. +|+.|++.    |+|||+.+||+||++++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            47999999999999999996 99999996    899999999999999998653

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.12  E-value=7.6e-11  Score=100.67  Aligned_cols=53  Identities=23%  Similarity=0.369  Sum_probs=48.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhc----CCCCHHHHHHHHHHhhHHH
Q 044021          233 PDIKKEAWSEEEDMILIQAHKEVGN-RWAEIARRL----IGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       233 p~ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l----~gRT~~qcr~Rw~~llrr~  285 (440)
                      +..++++||+|||+.|+++|++||. +|+.|++.+    +|||..+||+||+.+++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            4567899999999999999999996 999999965    8999999999999999754

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.11  E-value=7.9e-11  Score=102.89  Aligned_cols=55  Identities=24%  Similarity=0.418  Sum_probs=50.2

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhc----CCCCHHHHHHHHHHhhHH
Q 044021          230 HLKPDIKKEAWSEEEDMILIQAHKEVGN-RWAEIARRL----IGRTENTIKNHWNATKRR  284 (440)
Q Consensus       230 ~L~p~ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l----~gRT~~qcr~Rw~~llrr  284 (440)
                      -+.+..++++||+|||+.|+++|++||. +|+.|++.+    +|||..+||+||+.+++.
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            3556778999999999999999999996 999999984    899999999999999985

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.07  E-value=1.9e-10  Score=96.18  Aligned_cols=50  Identities=28%  Similarity=0.525  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021          236 KKEAWSEEEDMILIQAHKEVG----NRWAEIARRLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G----~kW~~IAk~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      .+++||.|||.+|++++.+||    ++|.+||+.|||||..+|++||+.+++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    67999999999999999999999987664

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.07  E-value=8.2e-11  Score=113.03  Aligned_cols=55  Identities=20%  Similarity=0.421  Sum_probs=48.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc------hHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021          233 PDIKKEAWSEEEDMILIQAHKEVGNR------WAEIARRLIGRTENTIKNHWNATKRRQQS  287 (440)
Q Consensus       233 p~ikk~~WT~EED~~Ll~lv~k~G~k------W~~IAk~l~gRT~~qcr~Rw~~llrr~~s  287 (440)
                      +.+++++||+|||++|+++|++||++      |..||+.|+|||++|||+||+.+|++...
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35678999999999999999999875      99999999999999999999999988754

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.06  E-value=2.4e-10  Score=99.93  Aligned_cols=53  Identities=21%  Similarity=0.423  Sum_probs=47.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-chHHHHHhc----CCCCHHHHHHHHHHhhHHH
Q 044021          233 PDIKKEAWSEEEDMILIQAHKEVGN-RWAEIARRL----IGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       233 p~ikk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l----~gRT~~qcr~Rw~~llrr~  285 (440)
                      ...++++||+|||+.|+++|++||. +|+.|++.+    +|||..+||+||+++++..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3456889999999999999999996 999999974    8999999999999999754

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.05  E-value=5.6e-11  Score=99.45  Aligned_cols=48  Identities=19%  Similarity=0.478  Sum_probs=43.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhC---CCChHHHHHHhcCCccccccchhcccc
Q 044021          184 IKGQWTPQEDRMLIRLVAQHG---TKKWSVIAKAMTGRVGKQCRERWYNHL  231 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G---~~nW~~IA~~lpgRt~~QCr~Rw~~~L  231 (440)
                      .++.||+|||++|++++.+||   ..+|..||..|||||..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            367899999999999999997   456999999999999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.3e-09  Score=84.11  Aligned_cols=48  Identities=17%  Similarity=0.196  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021          236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llr  283 (440)
                      ...+||+||++++++++.+||.+|..||..|++||..+|+.+|...++
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999987654

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.84  E-value=1.1e-09  Score=84.99  Aligned_cols=48  Identities=19%  Similarity=0.279  Sum_probs=43.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCChHHHHH---HhcCCccccccchhccccc
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAK---AMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~---~lpgRt~~QCr~Rw~~~L~  232 (440)
                      .+++||+|||+.|+++|++||. +|..|+.   .+++||...+++||+++..
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            5789999999999999999998 6999994   6789999999999987654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.80  E-value=7.5e-09  Score=86.51  Aligned_cols=67  Identities=18%  Similarity=0.268  Sum_probs=59.7

Q ss_pred             ccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhc-----CCCCHHHHHHHHHHhhHHHhhhh
Q 044021          219 VGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRL-----IGRTENTIKNHWNATKRRQQSKR  289 (440)
Q Consensus       219 t~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l-----~gRT~~qcr~Rw~~llrr~~sk~  289 (440)
                      ...=+.++|.++|.+    .+||.||+..|++++++||.+|..|+.++     ++||..++|+||..+.++....+
T Consensus        16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            345678899999976    89999999999999999999999999999     58999999999999988876544

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.77  E-value=1.2e-08  Score=97.27  Aligned_cols=78  Identities=17%  Similarity=0.258  Sum_probs=57.1

Q ss_pred             ChHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021          207 KWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       207 nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      +|..+-..|..+....+ ++++..-.......+||+||+.++++++.+||++|..||+.+++||..||+++|+..++|.
T Consensus       104 ~~kQ~~~~L~~~~~~~I-e~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl  181 (235)
T 2iw5_B          104 NIKQTNSALKEKLDGGI-EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF  181 (235)
T ss_dssp             HHHHHHHHHHHHSTTTT-GGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHhhc-ccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            46666655544443222 2343311112235699999999999999999999999999999999999999999877653

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=6.6e-09  Score=80.06  Aligned_cols=46  Identities=20%  Similarity=0.374  Sum_probs=42.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH  230 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~  230 (440)
                      ..++||+||++++++++.+||. +|..||..|++||..||..+|...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHh
Confidence            4679999999999999999996 599999999999999999999654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.71  E-value=6e-09  Score=83.20  Aligned_cols=51  Identities=18%  Similarity=0.287  Sum_probs=44.5

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhC---CCChHHHHHHhcCCccccccchhcccccC
Q 044021          182 NIIKGQWTPQEDRMLIRLVAQHG---TKKWSVIAKAMTGRVGKQCRERWYNHLKP  233 (440)
Q Consensus       182 ~ikKG~WT~EED~~Ll~lV~k~G---~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p  233 (440)
                      ...++.||.|||++|.+++.+|+   +++|.+||..+ |||..+|+.||..+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34577899999999999999997   45699999998 99999999999776543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.70  E-value=2.3e-08  Score=79.88  Aligned_cols=49  Identities=24%  Similarity=0.431  Sum_probs=44.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC----CchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          235 IKKEAWSEEEDMILIQAHKEVG----NRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       235 ikk~~WT~EED~~Ll~lv~k~G----~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      .+.+.||.|||++|.+++.+|+    .+|.+||..+ |||..+|++||+.+++.
T Consensus         6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            4567999999999999999997    5799999998 99999999999887654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.64  E-value=2e-08  Score=105.18  Aligned_cols=47  Identities=23%  Similarity=0.492  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          238 EAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       238 ~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      ..||++|..++++++.+||.+|..||+.+++||..|||++|....+|
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999765444

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.49  E-value=6.3e-08  Score=77.58  Aligned_cols=51  Identities=22%  Similarity=0.356  Sum_probs=45.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----chHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021          237 KEAWSEEEDMILIQAHKEVGN----RWAEIARRLIGRTENTIKNHWNATKRRQQS  287 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~----kW~~IAk~l~gRT~~qcr~Rw~~llrr~~s  287 (440)
                      ...||.+|+++|.+++..|+.    +|.+||..++|||..+|+.||..+++...+
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s   62 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGS   62 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcccc
Confidence            468999999999999999984    699999999999999999999998665443

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.47  E-value=7.7e-08  Score=77.06  Aligned_cols=49  Identities=20%  Similarity=0.400  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhcCCccccccchhcccccC
Q 044021          185 KGQWTPQEDRMLIRLVAQHGT---KKWSVIAKAMTGRVGKQCRERWYNHLKP  233 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~---~nW~~IA~~lpgRt~~QCr~Rw~~~L~p  233 (440)
                      ...||.+|+++|.+++..|+.   ++|..||..++|||..+|+.||..++.-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            457999999999999999975   4699999999999999999999877543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.39  E-value=6.2e-07  Score=89.27  Aligned_cols=98  Identities=19%  Similarity=0.256  Sum_probs=80.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccc-----------------------------------
Q 044021          187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHL-----------------------------------  231 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L-----------------------------------  231 (440)
                      .||..+...++.++.+||..+|..||..|+|+|...++.. ...+                                   
T Consensus       112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y-~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEY-NAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHH-HHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHH-HHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999998776441 1111                                   


Q ss_pred             ----------------cCCCCCCCCCHHHHHHHHHHHHHhCC----chHHHHH------------hcCCCCHHHHHHHHH
Q 044021          232 ----------------KPDIKKEAWSEEEDMILIQAHKEVGN----RWAEIAR------------RLIGRTENTIKNHWN  279 (440)
Q Consensus       232 ----------------~p~ikk~~WT~EED~~Ll~lv~k~G~----kW~~IAk------------~l~gRT~~qcr~Rw~  279 (440)
                                      -+..+...||++||+.||-++.+||-    .|..|..            ++..||+.+|..|.+
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                            01224568999999999999999994    5999973            456899999999999


Q ss_pred             HhhHHH
Q 044021          280 ATKRRQ  285 (440)
Q Consensus       280 ~llrr~  285 (440)
                      .|++--
T Consensus       271 tLi~~i  276 (304)
T 1ofc_X          271 TLITLI  276 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.34  E-value=1.6e-07  Score=72.11  Aligned_cols=48  Identities=21%  Similarity=0.506  Sum_probs=43.6

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCChHHHHH-HhcCCccccccchhccccc
Q 044021          185 KGQWTPQEDRMLIRLVAQH--------GTKKWSVIAK-AMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~--------G~~nW~~IA~-~lpgRt~~QCr~Rw~~~L~  232 (440)
                      |.+||+|||.+|++.|.+|        |..-|..+|+ .++++|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        5556999999 7999999999999998874

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.33  E-value=4.5e-07  Score=86.55  Aligned_cols=53  Identities=13%  Similarity=0.299  Sum_probs=46.6

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021          179 KKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      .......++||.||++++++++.+||. +|..||+.|++||..||+.+|.++..
T Consensus       127 e~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          127 EVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            344456789999999999999999996 59999999999999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.22  E-value=1.2e-06  Score=67.20  Aligned_cols=47  Identities=21%  Similarity=0.478  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCc-hHHHHH-hcCCCCHHHHHHHHHHhhH
Q 044021          237 KEAWSEEEDMILIQAHKEV--------GNR-WAEIAR-RLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~--------G~k-W~~IAk-~l~gRT~~qcr~Rw~~llr  283 (440)
                      +.+||+|||..|++.|.+|        |++ |..+++ .++++|-.+||+||.+.++
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        544 999999 7999999999999987653

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.13  E-value=3.7e-07  Score=76.26  Aligned_cols=57  Identities=23%  Similarity=0.371  Sum_probs=49.3

Q ss_pred             cccccccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-----cCCccccccchhccccc
Q 044021          171 VKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM-----TGRVGKQCRERWYNHLK  232 (440)
Q Consensus       171 ~rrrwk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l-----pgRt~~QCr~Rw~~~L~  232 (440)
                      +..+|+.++.+    ++||.||+..|++|+++|+.+ |..|+..+     ++||..++++||..+..
T Consensus        20 t~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           20 SEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             CHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            34567777755    799999999999999999987 99999999     58999999999977654

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.11  E-value=5.6e-06  Score=64.12  Aligned_cols=51  Identities=14%  Similarity=0.281  Sum_probs=45.6

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHH-hcCCCCHHHHHHHHHHhh
Q 044021          232 KPDIKKEAWSEEEDMILIQAHKEVGNRWAEIAR-RLIGRTENTIKNHWNATK  282 (440)
Q Consensus       232 ~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk-~l~gRT~~qcr~Rw~~ll  282 (440)
                      .|.+....||+||-.+..+++.+||.+|..|++ .+++||..+|...|....
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK   55 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK   55 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence            366778899999999999999999999999999 589999999998886543

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.93  E-value=9.1e-07  Score=70.74  Aligned_cols=44  Identities=14%  Similarity=0.366  Sum_probs=39.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhcCCccccccchhc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTK---KWSVIAKAMTGRVGKQCRERWY  228 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~---nW~~IA~~lpgRt~~QCr~Rw~  228 (440)
                      .+.||.||+++|.+++..|+..   +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            4579999999999999999754   7999999999999999999984

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.92  E-value=1.6e-05  Score=65.96  Aligned_cols=48  Identities=17%  Similarity=0.363  Sum_probs=44.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---chHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021          238 EAWSEEEDMILIQAHKEVGN---RWAEIARRLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       238 ~~WT~EED~~Ll~lv~k~G~---kW~~IAk~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      --||.|||+.||...++-|.   .|..||+.|.+|+++|+++||+.+++--
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            36999999999999999996   6999999999999999999999988753

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.76  E-value=4.2e-06  Score=66.89  Aligned_cols=43  Identities=26%  Similarity=0.542  Sum_probs=38.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----chHHHHHhcCCCCHHHHHHHHH
Q 044021          237 KEAWSEEEDMILIQAHKEVGN----RWAEIARRLIGRTENTIKNHWN  279 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~----kW~~IAk~l~gRT~~qcr~Rw~  279 (440)
                      ...||.+|+++|..++..|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999985    6999999999999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.74  E-value=2.3e-05  Score=60.64  Aligned_cols=49  Identities=18%  Similarity=0.276  Sum_probs=43.4

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHH-HhcCCccccccchhcc
Q 044021          180 KNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAK-AMTGRVGKQCRERWYN  229 (440)
Q Consensus       180 kp~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~-~lpgRt~~QCr~Rw~~  229 (440)
                      .|.+....||+||-++..+++.+||.. |..|++ .|++|+..||...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKd-f~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKN-FFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSC-HHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCcc-HHHHHHHHcCCCcHHHHHHHHhc
Confidence            466778899999999999999999975 999999 5899999999887743

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.88  E-value=5.2e-06  Score=65.35  Aligned_cols=45  Identities=16%  Similarity=0.455  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          239 AWSEEEDMILIQAHKEVGN---RWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       239 ~WT~EED~~Ll~lv~k~G~---kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      -||.|||+.||..+++-|.   .|+.||+.| +||++|+.+||+.+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            5999999999999999997   699999999 99999999999988764

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.67  E-value=8.5e-05  Score=61.96  Aligned_cols=60  Identities=18%  Similarity=0.293  Sum_probs=50.6

Q ss_pred             hhcccccCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHhcC-----CCCHHHHHHHHHHhhHHHhhhh
Q 044021          226 RWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLI-----GRTENTIKNHWNATKRRQQSKR  289 (440)
Q Consensus       226 Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~-----gRT~~qcr~Rw~~llrr~~sk~  289 (440)
                      -|..+|.    ...||.||...|++++++|+-+|..|+..+.     +||-.++|.||..+.++....+
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            3444554    3689999999999999999999999999874     7999999999999988876543

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.67  E-value=7.8e-05  Score=58.87  Aligned_cols=46  Identities=22%  Similarity=0.325  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHH-hcCCCCHHHHHHHHHHhh
Q 044021          237 KEAWSEEEDMILIQAHKEVGNRWAEIAR-RLIGRTENTIKNHWNATK  282 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk-~l~gRT~~qcr~Rw~~ll  282 (440)
                      ...||+||-.++.+++.+||.+|..|++ .|++||..+|...|....
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK   54 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWK   54 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            4689999999999999999999999999 589999999999987433

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.66  E-value=0.00023  Score=66.25  Aligned_cols=101  Identities=17%  Similarity=0.226  Sum_probs=71.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhC--CCChHHHHHH--hcCCccccccchhc-------c------------------------
Q 044021          185 KGQWTPQEDRMLIRLVAQHG--TKKWSVIAKA--MTGRVGKQCRERWY-------N------------------------  229 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G--~~nW~~IA~~--lpgRt~~QCr~Rw~-------~------------------------  229 (440)
                      ...||..|-..|++++.+||  ..+|..|+..  |.+|+...++.-+.       .                        
T Consensus         7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTF   86 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCEE
T ss_pred             CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchhh
Confidence            45799999999999999999  5679999875  56776644332000       0                        


Q ss_pred             --------------------ccc--------------------CCCCCCCCCHHHHHHHHHHHHHhC-CchHHHHHh--c
Q 044021          230 --------------------HLK--------------------PDIKKEAWSEEEDMILIQAHKEVG-NRWAEIARR--L  266 (440)
Q Consensus       230 --------------------~L~--------------------p~ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~--l  266 (440)
                                          .|.                    +......||++||..||.++.+|| ++|..|-..  +
T Consensus        87 ~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l  166 (211)
T 4b4c_A           87 RISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDL  166 (211)
T ss_dssp             EETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSS
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhc
Confidence                                000                    000123599999999999999999 899999762  1


Q ss_pred             ------------CCCCHHHHHHHHHHhhHHH
Q 044021          267 ------------IGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       267 ------------~gRT~~qcr~Rw~~llrr~  285 (440)
                                  ..++...+..|...+++-.
T Consensus       167 ~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l  197 (211)
T 4b4c_A          167 SLTHKILPDDPDKKPQAKQLQTRADYLIKLL  197 (211)
T ss_dssp             SCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred             CccccccccccccCCChHHHHHHHHHHHHHH
Confidence                        1245677999988877754

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.61  E-value=7.6e-05  Score=62.21  Aligned_cols=47  Identities=21%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021          237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llr  283 (440)
                      ...||+||..++.+++..||.+|..||..|++||..+|...|....+
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~Kk   89 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   89 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcccc
Confidence            46899999999999999999999999999999999999999876544

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.45  E-value=0.00038  Score=70.96  Aligned_cols=99  Identities=20%  Similarity=0.340  Sum_probs=78.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHhc-CCccccccchhcccc----------------------------------
Q 044021          187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHL----------------------------------  231 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp-gRt~~QCr~Rw~~~L----------------------------------  231 (440)
                      .||.-+=..++.++.+||..+-..||..|. |++...++. |.+.+                                  
T Consensus       125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999997 888866653 22211                                  


Q ss_pred             ------------------cCC-CCCCCCCHHHHHHHHHHHHHhC----CchHHHHHh------------cCCCCHHHHHH
Q 044021          232 ------------------KPD-IKKEAWSEEEDMILIQAHKEVG----NRWAEIARR------------LIGRTENTIKN  276 (440)
Q Consensus       232 ------------------~p~-ikk~~WT~EED~~Ll~lv~k~G----~kW~~IAk~------------l~gRT~~qcr~  276 (440)
                                        .+. .++..||++||..||-++.+||    +.|..|-..            +..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                              011 1345799999999999999999    459999542            45799999999


Q ss_pred             HHHHhhHHHh
Q 044021          277 HWNATKRRQQ  286 (440)
Q Consensus       277 Rw~~llrr~~  286 (440)
                      |.+.|++-..
T Consensus       284 Rc~tLi~~Ie  293 (374)
T 2y9y_A          284 RGNTLLQCLE  293 (374)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987643

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.27  E-value=0.00023  Score=74.67  Aligned_cols=48  Identities=15%  Similarity=0.349  Sum_probs=43.3

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021          182 NIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH  230 (440)
Q Consensus       182 ~ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~  230 (440)
                      ......||.||-+++++++.+||. +|..||..+++||..||+..|.++
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345689999999999999999996 599999999999999999998654

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.20  E-value=0.00018  Score=59.61  Aligned_cols=46  Identities=20%  Similarity=0.506  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CChHHHHHHhcCCccccccchhcccc
Q 044021          186 GQWTPQEDRMLIRLVAQHGT--KKWSVIAKAMTGRVGKQCRERWYNHL  231 (440)
Q Consensus       186 G~WT~EED~~Ll~lV~k~G~--~nW~~IA~~lpgRt~~QCr~Rw~~~L  231 (440)
                      -.||.|||..|+...++.|.  +.|..||+.|.+|+..|+++||+.++
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            36999999999999999986  25999999999999999999997654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.28  E-value=5.3e-05  Score=59.66  Aligned_cols=45  Identities=22%  Similarity=0.491  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCC--ChHHHHHHhcCCccccccchhccccc
Q 044021          187 QWTPQEDRMLIRLVAQHGTK--KWSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~G~~--nW~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      .||.|||..|+..+++-|..  -|..||..| +|++.|+.+||+.++.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            69999999999999999972  499999999 9999999999987654

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.16  E-value=0.00024  Score=59.22  Aligned_cols=43  Identities=21%  Similarity=0.422  Sum_probs=39.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWY  228 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~  228 (440)
                      ...||+||-+++.++...||.. |..||..|++||..+|.+.|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~-F~~Ia~~l~~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKN-FGLIASFLERKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTC-HHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC-HHHHHHHcCCCCHHHHHHHHh
Confidence            4579999999999999999965 999999999999999998774

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.12  E-value=0.00031  Score=55.42  Aligned_cols=44  Identities=14%  Similarity=0.267  Sum_probs=39.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHH-HhcCCccccccchhcc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAK-AMTGRVGKQCRERWYN  229 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~-~lpgRt~~QCr~Rw~~  229 (440)
                      ...||+||-++..+++.+||.. |..|++ .|++|+..+|..-|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKd-f~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKD-FNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSC-HHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcc-HHHHHHHHcCCCCHHHHHHHHHh
Confidence            4579999999999999999975 999999 5999999999987753

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.02  E-value=0.00065  Score=54.99  Aligned_cols=48  Identities=19%  Similarity=0.526  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------chHHHHHhcC----CCCHHHHHHHHHHhhHH
Q 044021          237 KEAWSEEEDMILIQAHKEVGN----------RWAEIARRLI----GRTENTIKNHWNATKRR  284 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~----------kW~~IAk~l~----gRT~~qcr~Rw~~llrr  284 (440)
                      ...||.+|-..||+++..+..          .|..||..|.    .||+.||+.+|..|.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999976321          4999999873    69999999999998776

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.96  E-value=0.00023  Score=57.66  Aligned_cols=49  Identities=29%  Similarity=0.547  Sum_probs=39.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC------C---ChHHHHHHhc----CCccccccchhccccc
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGT------K---KWSVIAKAMT----GRVGKQCRERWYNHLK  232 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~------~---nW~~IA~~lp----gRt~~QCr~Rw~~~L~  232 (440)
                      +...||.+|..+|+++......      .   .|..||..|.    .||+.||+.+|.++..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            3568999999999999976411      1   4999999883    6999999999987653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.47  E-value=0.0019  Score=53.82  Aligned_cols=46  Identities=24%  Similarity=0.411  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHHHhc-----CCccccccchhccccc
Q 044021          186 GQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-----GRVGKQCRERWYNHLK  232 (440)
Q Consensus       186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~~lp-----gRt~~QCr~Rw~~~L~  232 (440)
                      ..||.||...|.+|+++|+.+ |..|+....     .|+..+.++||..+..
T Consensus        31 ~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence            479999999999999999987 999999873     7999999999977653

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.86  E-value=0.031  Score=43.52  Aligned_cols=49  Identities=14%  Similarity=0.190  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc---hHHHHHhc--CCCCHHHHHHHHHHhhHH
Q 044021          236 KKEAWSEEEDMILIQAHKEVGNR---WAEIARRL--IGRTENTIKNHWNATKRR  284 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G~k---W~~IAk~l--~gRT~~qcr~Rw~~llrr  284 (440)
                      .+-.||+|..+.++++|.++|..   |..|.+.|  +|.|..+|++|.+++...
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~   59 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            45689999999999999999954   89999987  599999999999876543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.68  E-value=0.079  Score=41.19  Aligned_cols=48  Identities=13%  Similarity=0.132  Sum_probs=39.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCC--hHHHHHHh--cCCccccccchhccc
Q 044021          183 IIKGQWTPQEDRMLIRLVAQHGTKK--WSVIAKAM--TGRVGKQCRERWYNH  230 (440)
Q Consensus       183 ikKG~WT~EED~~Ll~lV~k~G~~n--W~~IA~~l--pgRt~~QCr~Rw~~~  230 (440)
                      ..+-.||+|..+.++++|++.|..+  |..|.+.|  +|.|..+++.+.+.|
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3466799999999999999999543  89999988  688888888776543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.07  E-value=0.21  Score=49.62  Aligned_cols=49  Identities=20%  Similarity=0.281  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-chHHHHHhcCCCCHHHHHHHHHHhhHHH
Q 044021          237 KEAWSEEEDMILIQAHKEVGN-RWAEIARRLIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l~gRT~~qcr~Rw~~llrr~  285 (440)
                      -+.||..|...++.++.+||. .|..||..|+|+|...|+..+.....|-
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry  159 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC  159 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence            457999999999999999995 7999999999999999987777666554

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=89.52  E-value=0.48  Score=43.62  Aligned_cols=50  Identities=22%  Similarity=0.333  Sum_probs=41.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CchHHHHHh--cCCCCHHHHHHHHHHhhHH
Q 044021          235 IKKEAWSEEEDMILIQAHKEVG---NRWAEIARR--LIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       235 ikk~~WT~EED~~Ll~lv~k~G---~kW~~IAk~--l~gRT~~qcr~Rw~~llrr  284 (440)
                      -....||+.|-..|+.++.+||   .+|..|+..  |.++|...++.-+..++.+
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            3457899999999999999999   579999875  7899999999877666554

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.16  E-value=0.26  Score=48.16  Aligned_cols=28  Identities=32%  Similarity=0.577  Sum_probs=26.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHH
Q 044021          186 GQWTPQEDRMLIRLVAQHGTKKWSVIAK  213 (440)
Q Consensus       186 G~WT~EED~~Ll~lV~k~G~~nW~~IA~  213 (440)
                      ..|+.+||..|+..|.+||.++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4699999999999999999999999976

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=86.70  E-value=0.43  Score=46.62  Aligned_cols=27  Identities=30%  Similarity=0.633  Sum_probs=24.8

Q ss_pred             CCCCHHHHHHHHHHHHHhC-CchHHHHH
Q 044021          238 EAWSEEEDMILIQAHKEVG-NRWAEIAR  264 (440)
Q Consensus       238 ~~WT~EED~~Ll~lv~k~G-~kW~~IAk  264 (440)
                      ..|+.+||..||.+|-+|| +.|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3599999999999999999 89999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-22
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	7e-07
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-21
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-10
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-21
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-17
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-10
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-15
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	0.004
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-13
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	6e-15
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	4e-07
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-14
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-12
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-06
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-13
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-06
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-13
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	5e-13
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	5e-13
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	7e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-12
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-10
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-10
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	6e-10
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	4e-04

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.6 bits (222), Expect = 1e-22
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKK-----WSVIAKAMTGRVGKQCRERWYNHLKPDIKKEA 239
           K  +T +ED  ++ +V ++ T++     +  I+  +    G   R R+  +L   ++   
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 240 WSEEEDMILIQAHKE 254
             ++   ++      
Sbjct: 61  EVDKFGKLVRDDDGN 75

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (106), Expect = 7e-07
 Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 237 KEAWSEEEDMILIQAHKEVGNR------WAEIARRLIGRTENTIKNHWN 279
           K ++++EED  ++   ++   R      + EI+  +   T N+I++ + 
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFR 49

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.8 bits (210), Expect = 2e-21
 Identities = 33/52 (63%), Positives = 44/52 (84%)

Query: 183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
           +IKG WT +ED+ LI+LV ++G K+WSVIAK + GR+GKQCRERW+NHL P+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (125), Expect = 8e-10
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 235 IKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWN 279
           + K  W++EED  LI+  ++ G  RW+ IA+ L GR     +  W+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.7 bits (207), Expect = 5e-21
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD 234
           K +WT +ED  L +LV Q+GT  W VIA  +  R   QC+ RW   L P+
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 237 KEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWN 279
           K  W+ EED  L +  ++ G + W  IA  L  RT+   ++ W 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 44

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (178), Expect = 6e-17
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEE 244
             +WT +E  +  + +A+   ++W+ I+K +  R   Q +     + K  +K     E  
Sbjct: 2   SVKWTIEEKELFEQGLAKF-GRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 245 DM 246
           + 
Sbjct: 61  NQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 4e-10
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 240 WSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQLQE 297
           W+ EE  +  Q   + G RW +I++ +  RT   +K++     + +  K    K+   
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV-KCGLDKETPN 61

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 68.9 bits (168), Expect = 2e-15
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 10/81 (12%)

Query: 188 WTPQEDRMLIRLVAQHGTKKWSVIAKAM----TGRVGKQCRERWYNHLKPDIKKEAW--- 240
           ++  E   L+  V   GT +W  +          R     +++W   +            
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 241 ---SEEEDMILIQAHKEVGNR 258
               ++    ++ AH     +
Sbjct: 63  EPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 239 AWSEEEDMILIQAHKEVGN-RWAEIARR----LIGRTENTIKNHWN---ATKRRQQSKRN 290
            +S  E   L++A + +G  RW ++  R       RT   +K+ W     T      +R 
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 291 TRKQLQE 297
                Q+
Sbjct: 62  GEPVPQD 68

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.8 bits (163), Expect = 4e-15
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK 232
           K  WT +EDR++ +   +    +W+ IAK + GR     +  W + ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.9 bits (153), Expect = 1e-13
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR 283
           K +W+EEED I+ QAHK +GNRWAEIA+ L GRT+N IKNHWN+T R
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 6e-15
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKA--MTGRVGKQCRERWYNHLK 232
           +  W  +ED+ L   V ++G   WS I        R     ++RW    K
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 236 KKEAWSEEEDMILIQAHKEVGN-RWAEIARR--LIGRTENTIKNHWNATKR 283
           K++AW  EED  L    ++ G   W++I        RT   +K+ W   K+
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 2e-14
 Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK---PDIKKEAW 240
              +WT +E  + ++ + ++G + +  I+  +  +   Q +  + N+ +    D   + W
Sbjct: 4   CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 62

Query: 241 SEE 243
             E
Sbjct: 63  EAE 65

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSKRNTRKQL 295
               W+ EE ++ +QA ++ G  +  I+  +  ++   +KN +   +RR       ++  
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWE 63

Query: 296 QE 297
            E
Sbjct: 64  AE 65

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (157), Expect = 3e-14
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKA--MTGRVGKQCRERWYNHLKPDI 235
           K +WT +E   +   V ++G   W+ I+K      R     ++RW    +  +
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 4e-06
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 236 KKEAWSEEEDMILIQAHKEVG-NRWAEIARR--LIGRTENTIKNHWNATKRR 284
           KK+ W+ EE   +    ++ G   WA I++    + RT   IK+ W   KR 
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 2e-13
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 188 WTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH 230
           WT QE+  L+  V   G   W  +A  M  +  ++C + +  +
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 240 WSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWN 279
           W+ +E+M L++A  + G   W ++A ++  +T+   + H+ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 4e-13
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 170 PVKRERKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYN 229
           P+K  +     N      W+ QE         QH  K + +IA  +  +   +C   +Y 
Sbjct: 7   PMKVYKDRQVMN-----MWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 60

Query: 230 HLK 232
             K
Sbjct: 61  TKK 63

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 5e-13
 Identities = 12/57 (21%), Positives = 21/57 (36%)

Query: 232 KPDIKKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQSK 288
           K       WSE+E     +   +    +  IA  L  +T      ++  TK+ +  K
Sbjct: 12  KDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYK 68

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 61.5 bits (149), Expect = 5e-13
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 188 WTPQEDRMLIRLVAQHGTK---KWSVIAKAMTGRVGKQCRERWYNHLKPDIKK 237
           W+ +E++   R +A +      +W+ +A+A+ GR  ++ ++ +   L  DIK 
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 49.5 bits (118), Expect = 7e-09
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 240 WSEEEDMILIQAHKEVG----NRWAEIARRLIGRTENTIKNHWNATKR 283
           WS +E+    +A         +RWA +AR + GRT   +K H+     
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 1e-12
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 179 KKNNIIKGQWTPQEDRMLIRLVAQHGT---KKWSVIAKAMTGRVGKQCRERW 227
           ++    +  WT  + ++L   + Q+       W  IA+ +  +  + C  R+
Sbjct: 6   ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 5e-10
 Identities = 8/51 (15%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 232 KPDIKKEAWSEEEDMILIQAHKEVG----NRWAEIARRLIGRTENTIKNHW 278
           +    +E W++ +  +L  A ++      + W +IAR +  +++      +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (135), Expect = 1e-10
 Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 212 AKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNR---WAEIARRLIG 268
           A A+                    K   W+ E D +++   +E G +   ++ I+++L  
Sbjct: 8   AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN 67

Query: 269 RTENTIKNHWNATKRRQQS 287
           +T   + + +    +   +
Sbjct: 68  KTPVEVSHRFRELMQLFHT 86

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (129), Expect = 6e-10
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 178 PKKNNIIKGQWTPQEDRMLIRLVAQHGT--KKWSVIAKAMTGRVGKQCRERW 227
                     WT + DR+++ +  + G     +SVI++ +  +   +   R+
Sbjct: 26  VSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 238 EAWSEEEDMILIQAHKEVGNRWAEIARRLIG-RTENTIKNH---WNATKRRQQSKR 289
           E WS  E  +  +A ++ G  + +I +  +  ++  +I  +   W  T R  Q KR
Sbjct: 2   EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKR 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.71
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.6
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.57
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.56
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.53
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.48
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.47
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.46
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.43
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.39
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.39
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.36
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.32
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.32
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.32
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.31
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.27
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.24
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.21
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.19
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.11
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.1
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.05
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.94
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.89
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.88
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.19
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.1
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.04
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.69
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.36
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.09
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.76
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.65
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.75
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.65
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.71
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	93.44
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	87.05
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	83.02
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	81.35

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=4e-20  Score=150.86  Aligned_cols=70  Identities=16%  Similarity=0.288  Sum_probs=64.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCC-----hHHHHHHhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHH
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKK-----WSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKE  254 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~n-----W~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k  254 (440)
                      |+.||+|||++|+++|.+||...     |..||..|||||++|||+||+++|+|.++++.||++||.+|+..+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            68999999999999999999754     99999999999999999999999999999999999999988765543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.2e-18  Score=127.90  Aligned_cols=52  Identities=63%  Similarity=1.229  Sum_probs=49.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021          183 IIKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD  234 (440)
Q Consensus       183 ikKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~  234 (440)
                      ++||+||+|||++|+++|++||.++|..||+.|++||+.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999888999999999999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.6e-17  Score=122.03  Aligned_cols=50  Identities=44%  Similarity=0.871  Sum_probs=48.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCC
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPD  234 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~  234 (440)
                      |++||+|||++|+++|.+||.++|..||..|+|||+.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            67899999999999999999989999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=4.4e-16  Score=113.13  Aligned_cols=47  Identities=68%  Similarity=1.153  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021          237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llr  283 (440)
                      |.+||+|||++|+++|++||++|+.||+.|||||+.+||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998875

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.57  E-value=5.3e-16  Score=125.16  Aligned_cols=72  Identities=15%  Similarity=0.362  Sum_probs=61.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHH----hcCCccccccchhccccc-----CCCCCCCCCHHHHHHHHHHHHHhCC
Q 044021          187 QWTPQEDRMLIRLVAQHGTKKWSVIAKA----MTGRVGKQCRERWYNHLK-----PDIKKEAWSEEEDMILIQAHKEVGN  257 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~----lpgRt~~QCr~Rw~~~L~-----p~ikk~~WT~EED~~Ll~lv~k~G~  257 (440)
                      +||+|||++|+++|++||.++|..|++.    +++||+.||++||+++|+     +..+++.|+++|   |+..|.+++.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            7999999999999999999899999986    589999999999999984     667888999877   5666666666


Q ss_pred             chHH
Q 044021          258 RWAE  261 (440)
Q Consensus       258 kW~~  261 (440)
                      +|++
T Consensus        79 ~wsq   82 (83)
T d2ckxa1          79 YWSQ   82 (83)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7764

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.4e-15  Score=112.54  Aligned_cols=50  Identities=32%  Similarity=0.665  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          235 IKKEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       235 ikk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      +.||+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+.+|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 5899999999999999999999988764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-15  Score=112.91  Aligned_cols=53  Identities=23%  Similarity=0.475  Sum_probs=48.8

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCChHHHHHH--hcCCccccccchhcccccCCCC
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKA--MTGRVGKQCRERWYNHLKPDIK  236 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~--lpgRt~~QCr~Rw~~~L~p~ik  236 (440)
                      +|++||+|||++|+++|++||.++|..||+.  +++||+.||++||+++++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            4779999999999999999999889999998  5699999999999999998764

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=5.4e-15  Score=107.27  Aligned_cols=47  Identities=30%  Similarity=0.736  Sum_probs=44.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccccc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~  232 (440)
                      |++||+|||++|+++|++||.+ |..||..|||||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~-W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSC-HHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhH-HHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            5789999999999999999985 9999999999999999999988763

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.3e-14  Score=104.94  Aligned_cols=48  Identities=29%  Similarity=0.529  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          237 KEAWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      |+.||+|||++|+++|.+|| ++|..||..|+|||+.||++||+.+|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5799999999999999999999988753

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-14  Score=106.99  Aligned_cols=48  Identities=25%  Similarity=0.410  Sum_probs=44.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHh--cCCccccccchhcccc
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM--TGRVGKQCRERWYNHL  231 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l--pgRt~~QCr~Rw~~~L  231 (440)
                      +|++||+|||++|+++|.+||.++|..||..+  .+||+.||++||+++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999998899999985  4999999999998864

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.4e-14  Score=103.68  Aligned_cols=44  Identities=25%  Similarity=0.585  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021          187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH  230 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~  230 (440)
                      .||+|||++|+++|.+||.++|..||+.|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            49999999999999999998999999999999999999999875

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.2e-13  Score=100.51  Aligned_cols=48  Identities=31%  Similarity=0.599  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-chHHHHHhcC--CCCHHHHHHHHHHhhH
Q 044021          236 KKEAWSEEEDMILIQAHKEVGN-RWAEIARRLI--GRTENTIKNHWNATKR  283 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G~-kW~~IAk~l~--gRT~~qcr~Rw~~llr  283 (440)
                      ++++||+|||+.|+++|.+||. +|+.|++.++  |||+.||++||+.+.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4789999999999999999995 8999999854  9999999999988764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2e-13  Score=101.75  Aligned_cols=50  Identities=32%  Similarity=0.641  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchHHHHHh--cCCCCHHHHHHHHHHhhHHH
Q 044021          236 KKEAWSEEEDMILIQAHKEVG-NRWAEIARR--LIGRTENTIKNHWNATKRRQ  285 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G-~kW~~IAk~--l~gRT~~qcr~Rw~~llrr~  285 (440)
                      ++.+||+|||++|+++|++|| ++|+.||+.  |++||+.||++||+.+++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            478999999999999999999 589999998  56999999999999988764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.3e-13  Score=102.53  Aligned_cols=51  Identities=22%  Similarity=0.357  Sum_probs=47.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHHHhh
Q 044021          237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRRQQS  287 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr~~s  287 (440)
                      ...||+|||.+|+++|.+||.+|..||++|+|||+.||++||+.++++..+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k   52 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK   52 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            357999999999999999999999999999999999999999998887654

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.9e-13  Score=101.67  Aligned_cols=51  Identities=18%  Similarity=0.402  Sum_probs=46.1

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhcCCccccccchhcc
Q 044021          179 KKNNIIKGQWTPQEDRMLIRLVAQHGTK---KWSVIAKAMTGRVGKQCRERWYN  229 (440)
Q Consensus       179 kkp~ikKG~WT~EED~~Ll~lV~k~G~~---nW~~IA~~lpgRt~~QCr~Rw~~  229 (440)
                      .++...+++||+|||++|+++|.+||..   +|..||..|||||+.||+.||+.
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4566778899999999999999999975   49999999999999999999964

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=3.8e-13  Score=109.06  Aligned_cols=56  Identities=18%  Similarity=0.328  Sum_probs=50.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc------hHHHHHhcCCCCHHHHHHHHHHhhHHHhhhhhhh
Q 044021          237 KEAWSEEEDMILIQAHKEVGNR------WAEIARRLIGRTENTIKNHWNATKRRQQSKRNTR  292 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~k------W~~IAk~l~gRT~~qcr~Rw~~llrr~~sk~k~~  292 (440)
                      |+.||+|||++|+++|.+||..      |..||+.|||||+.|||+||+..|.+...+....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t   62 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEV   62 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCC
Confidence            5799999999999999999964      9999999999999999999999999876554433

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=9.6e-13  Score=95.12  Aligned_cols=43  Identities=23%  Similarity=0.652  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHh
Q 044021          239 AWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNAT  281 (440)
Q Consensus       239 ~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~l  281 (440)
                      .||+|||.+|+++|.+|| ++|..||+.|+|||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            499999999999999999 5799999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.1e-13  Score=104.33  Aligned_cols=58  Identities=22%  Similarity=0.325  Sum_probs=51.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccccCCCCCCCCCHH
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHLKPDIKKEAWSEE  243 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~E  243 (440)
                      ..+||+|||++|+++|.+||. +|..||..|++||+.||+.||.+++.+..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-hHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            357999999999999999995 6999999999999999999999999887777665543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3e-12  Score=96.65  Aligned_cols=50  Identities=16%  Similarity=0.375  Sum_probs=45.3

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC----chHHHHHhcCCCCHHHHHHHHHHh
Q 044021          232 KPDIKKEAWSEEEDMILIQAHKEVGN----RWAEIARRLIGRTENTIKNHWNAT  281 (440)
Q Consensus       232 ~p~ikk~~WT~EED~~Ll~lv~k~G~----kW~~IAk~l~gRT~~qcr~Rw~~l  281 (440)
                      .+...+.+||+|||.+|+++|.+||.    +|.+||..|||||..||+.||+.|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45567789999999999999999995    599999999999999999999864

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=5e-12  Score=103.74  Aligned_cols=73  Identities=14%  Similarity=0.206  Sum_probs=65.7

Q ss_pred             HhcCCccccccchhcccccCCCCCCCCCHHHHHHHHHHHHHhCCc---hHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021          214 AMTGRVGKQCRERWYNHLKPDIKKEAWSEEEDMILIQAHKEVGNR---WAEIARRLIGRTENTIKNHWNATKRRQQ  286 (440)
Q Consensus       214 ~lpgRt~~QCr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~k~G~k---W~~IAk~l~gRT~~qcr~Rw~~llrr~~  286 (440)
                      .+|..+..++..++.+....+.....||.|||+.||+.++++|.+   |..||+.|+||++.|||+||+.+++...
T Consensus        10 ~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~   85 (95)
T d1ug2a_          10 ALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            356677888888888888888888899999999999999999977   9999999999999999999999988754

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.21  E-value=8.8e-12  Score=95.00  Aligned_cols=47  Identities=30%  Similarity=0.569  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----chHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          238 EAWSEEEDMILIQAHKEVGN----RWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       238 ~~WT~EED~~Ll~lv~k~G~----kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      .+||+|||.+|++++++||.    +|.+||..|+|||..||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            57999999999999999995    499999999999999999999877654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.19  E-value=3.1e-12  Score=97.57  Aligned_cols=44  Identities=20%  Similarity=0.524  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---hHHHHHHhcCCccccccchhcc
Q 044021          186 GQWTPQEDRMLIRLVAQHGTKK---WSVIAKAMTGRVGKQCRERWYN  229 (440)
Q Consensus       186 G~WT~EED~~Ll~lV~k~G~~n---W~~IA~~lpgRt~~QCr~Rw~~  229 (440)
                      .+||+|||++|+++|++||.+.   |..||..|+|||+.||++||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3799999999999999999764   9999999999999999999954

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.11  E-value=5e-11  Score=95.53  Aligned_cols=49  Identities=24%  Similarity=0.454  Sum_probs=44.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-chHHHHHh----cCCCCHHHHHHHHHHhhHHHh
Q 044021          238 EAWSEEEDMILIQAHKEVGN-RWAEIARR----LIGRTENTIKNHWNATKRRQQ  286 (440)
Q Consensus       238 ~~WT~EED~~Ll~lv~k~G~-kW~~IAk~----l~gRT~~qcr~Rw~~llrr~~  286 (440)
                      .+||.|||..|+++|.+||. +|+.|++.    ++|||+.||++||+.+++...
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~   54 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhc
Confidence            48999999999999999995 89999986    579999999999999997654

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.2e-11  Score=91.50  Aligned_cols=48  Identities=23%  Similarity=0.487  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhHH
Q 044021          237 KEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKRR  284 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llrr  284 (440)
                      ...||++||.+|++++.+||.+|..||+.|+|||..+|++||+.+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.3e-11  Score=92.29  Aligned_cols=48  Identities=21%  Similarity=0.198  Sum_probs=44.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHhcCCCCHHHHHHHHHHhhH
Q 044021          236 KKEAWSEEEDMILIQAHKEVGNRWAEIARRLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       236 kk~~WT~EED~~Ll~lv~k~G~kW~~IAk~l~gRT~~qcr~Rw~~llr  283 (440)
                      ...+||+|||.+|++++.+||.+|..||+.|+|||..||++||....+
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            456899999999999999999999999999999999999999986543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.3e-10  Score=87.24  Aligned_cols=46  Identities=15%  Similarity=0.367  Sum_probs=42.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhcccc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNHL  231 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~L  231 (440)
                      +.+||+|||++|.+++..||.+ |..||..|+|||..||+.||.++.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~-w~~Ia~~~~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRD-FQAISDVIGNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSC-HHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCch-HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3579999999999999999965 999999999999999999998764

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=6.1e-10  Score=91.17  Aligned_cols=57  Identities=16%  Similarity=0.358  Sum_probs=48.4

Q ss_pred             cccCCCCCCCcCCCCHHHHHHHHHHHHHhCCCC--hHHHHHHhcCCccccccchhcccc
Q 044021          175 RKLPKKNNIIKGQWTPQEDRMLIRLVAQHGTKK--WSVIAKAMTGRVGKQCRERWYNHL  231 (440)
Q Consensus       175 wk~~kkp~ikKG~WT~EED~~Ll~lV~k~G~~n--W~~IA~~lpgRt~~QCr~Rw~~~L  231 (440)
                      +-+..+...+...||.|||++|++.++++|...  |..||+.|+||++.||++||..++
T Consensus        23 n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          23 NSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             cCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            333455566678899999999999999999654  999999999999999999996654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.6e-10  Score=87.79  Aligned_cols=46  Identities=20%  Similarity=0.393  Sum_probs=42.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccchhccc
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRERWYNH  230 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~Rw~~~  230 (440)
                      ...+||+||+++|++++.+||. +|..||..|+|||..||+.+|...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4568999999999999999996 599999999999999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=8e-07  Score=65.89  Aligned_cols=46  Identities=22%  Similarity=0.355  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHHHh-cCCCCHHHHHHHHHHhhH
Q 044021          238 EAWSEEEDMILIQAHKEVGNRWAEIARR-LIGRTENTIKNHWNATKR  283 (440)
Q Consensus       238 ~~WT~EED~~Ll~lv~k~G~kW~~IAk~-l~gRT~~qcr~Rw~~llr  283 (440)
                      ..||+||..++.+++..||.+|..|++. +|+||..+|.+.|....+
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~Kk   48 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKT   48 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999999999986 699999999999975433

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=7e-07  Score=66.90  Aligned_cols=45  Identities=20%  Similarity=0.353  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhcCCccccccchhcccc
Q 044021          186 GQWTPQEDRMLIRLVAQHGTK---KWSVIAKAMTGRVGKQCRERWYNHL  231 (440)
Q Consensus       186 G~WT~EED~~Ll~lV~k~G~~---nW~~IA~~lpgRt~~QCr~Rw~~~L  231 (440)
                      +.||.||+.+|.+++.+|+.+   +|..||..+ ||+..+|..||..+-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            479999999999999999643   699999999 999999999996543

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.1e-06  Score=63.27  Aligned_cols=44  Identities=27%  Similarity=0.508  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CchHHHHHhcCCCCHHHHHHHHHHhh
Q 044021          238 EAWSEEEDMILIQAHKEVG----NRWAEIARRLIGRTENTIKNHWNATK  282 (440)
Q Consensus       238 ~~WT~EED~~Ll~lv~k~G----~kW~~IAk~l~gRT~~qcr~Rw~~ll  282 (440)
                      ..||.+|+.+|.+++.+|.    .+|.+||..+ |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999997    4699999999 999999999997664

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=1.1e-05  Score=59.63  Aligned_cols=42  Identities=14%  Similarity=0.313  Sum_probs=38.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHH-hcCCccccccchhcc
Q 044021          187 QWTPQEDRMLIRLVAQHGTKKWSVIAKA-MTGRVGKQCRERWYN  229 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~-lpgRt~~QCr~Rw~~  229 (440)
                      .||+||-.++.+++..||.. |..|++. +|+|+..||...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGKd-f~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKD-FNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSC-HHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccc-HHHHHHHHcCCCCHHHHHHHHHH
Confidence            69999999999999999974 9999985 699999999998754

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.36  E-value=0.00026  Score=53.39  Aligned_cols=48  Identities=15%  Similarity=0.222  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCch---HHHHHhc--CCCCHHHHHHHHHHhhHH
Q 044021          237 KEAWSEEEDMILIQAHKEVGNRW---AEIARRL--IGRTENTIKNHWNATKRR  284 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~kW---~~IAk~l--~gRT~~qcr~Rw~~llrr  284 (440)
                      +-.||+||.+++++++..+|..|   ..|...|  +|+|..+|+.|.+++.-+
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~   59 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVA   59 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            56799999999999999999887   5777775  799999999999887543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00077  Score=47.08  Aligned_cols=46  Identities=22%  Similarity=0.444  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHhc---CCCCHHHHHHHHHHhh
Q 044021          237 KEAWSEEEDMILIQAHKEVGNRWAEIARRL---IGRTENTIKNHWNATK  282 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~kW~~IAk~l---~gRT~~qcr~Rw~~ll  282 (440)
                      +..||.||-.-|+..|+++|+.|..|-=.+   +||+..++..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            357999999999999999999999997655   5999999999998763

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00094  Score=49.45  Aligned_cols=47  Identities=19%  Similarity=0.434  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-hHHHHH-hcCCCCHHHHHHHHHHhhH
Q 044021          237 KEAWSEEEDMILIQAHKEVG--------NR-WAEIAR-RLIGRTENTIKNHWNATKR  283 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G--------~k-W~~IAk-~l~gRT~~qcr~Rw~~llr  283 (440)
                      +.+||.+||+.|++.|.++.        +. |...++ .++.+|-.+.|+||.+.||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999874        22 999996 5799999999999987664

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.65  E-value=0.00079  Score=50.64  Aligned_cols=46  Identities=13%  Similarity=0.182  Sum_probs=38.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCh--HHHHHHh--cCCccccccchhccc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKW--SVIAKAM--TGRVGKQCRERWYNH  230 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW--~~IA~~l--pgRt~~QCr~Rw~~~  230 (440)
                      +-.||+||.++++++|+.+|.++|  ..|.+.|  +++|..||+.+.+.|
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            457999999999999999998755  5888876  889999998776554

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00095  Score=49.41  Aligned_cols=48  Identities=19%  Similarity=0.463  Sum_probs=40.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------ChHHHHH-HhcCCccccccchhccccc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTK--------KWSVIAK-AMTGRVGKQCRERWYNHLK  232 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~--------nW~~IA~-~lpgRt~~QCr~Rw~~~L~  232 (440)
                      |-+||.|||++|++.|..+...        =|...++ .++.+|-.+-|+||.++|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            4589999999999999998322        2999996 5799999999999988874

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0042  Score=43.25  Aligned_cols=44  Identities=20%  Similarity=0.376  Sum_probs=38.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCChHHHHHHh---cCCccccccchhcc
Q 044021          185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAM---TGRVGKQCRERWYN  229 (440)
Q Consensus       185 KG~WT~EED~~Ll~lV~k~G~~nW~~IA~~l---pgRt~~QCr~Rw~~  229 (440)
                      |..||.||-.-|...|+++|.. |..|-=.+   +||+......+|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~-WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNH-WNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSC-HHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcch-hhhhhhccCCCCCchhhHHHHHHHh
Confidence            3479999999999999999987 99998766   79999888877754

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0065  Score=46.04  Aligned_cols=50  Identities=20%  Similarity=0.373  Sum_probs=43.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhcCCccccccchhcccccC
Q 044021          184 IKGQWTPQEDRMLIRLVAQHGTK---KWSVIAKAMTGRVGKQCRERWYNHLKP  233 (440)
Q Consensus       184 kKG~WT~EED~~Ll~lV~k~G~~---nW~~IA~~lpgRt~~QCr~Rw~~~L~p  233 (440)
                      ..+.|+++|-.+|-.++......   -|..||..+..|++..|...|...+..
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            45689999999999999988644   499999999999999999999876653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.019  Score=43.44  Aligned_cols=50  Identities=20%  Similarity=0.374  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc----hHHHHHhcCCCCHHHHHHHHHHhhHHHh
Q 044021          237 KEAWSEEEDMILIQAHKEVGNR----WAEIARRLIGRTENTIKNHWNATKRRQQ  286 (440)
Q Consensus       237 k~~WT~EED~~Ll~lv~k~G~k----W~~IAk~l~gRT~~qcr~Rw~~llrr~~  286 (440)
                      -+.|+++|=.+|-.++..+...    |..+|..++.||...|..+|+.-.+-+.
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~~   61 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKG   61 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSC
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccccc
Confidence            4689999999999999988743    9999999999999999999988655443

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.44  E-value=0.068  Score=44.81  Aligned_cols=68  Identities=16%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             ccccccchhccccc--CCCCCCCCCHHHHHHHHHHHHHhC-Cc---hHHHHH------------hcCCCCHHHHHHHHHH
Q 044021          219 VGKQCRERWYNHLK--PDIKKEAWSEEEDMILIQAHKEVG-NR---WAEIAR------------RLIGRTENTIKNHWNA  280 (440)
Q Consensus       219 t~~QCr~Rw~~~L~--p~ikk~~WT~EED~~Ll~lv~k~G-~k---W~~IAk------------~l~gRT~~qcr~Rw~~  280 (440)
                      -..+|+.-|..+--  +..++..+|+|||.-|+-.+.+|| ++   |..|-.            .+..||+..|..|.+.
T Consensus        29 Ki~~y~~P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~t  108 (128)
T d1ofcx2          29 KMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNT  108 (128)
T ss_dssp             HHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHH
T ss_pred             HHHHhcChHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHH
Confidence            34556665654311  344556799999999999999999 55   988853            2468999999999999


Q ss_pred             hhHHHh
Q 044021          281 TKRRQQ  286 (440)
Q Consensus       281 llrr~~  286 (440)
                      +++--.
T Consensus       109 Li~~i~  114 (128)
T d1ofcx2         109 LITLIE  114 (128)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.05  E-value=0.78  Score=32.43  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchHHHHHhcCCCCHHHHHHHHHHh
Q 044021          239 AWSEEEDMILIQAHKEVG-NRWAEIARRLIGRTENTIKNHWNAT  281 (440)
Q Consensus       239 ~WT~EED~~Ll~lv~k~G-~kW~~IAk~l~gRT~~qcr~Rw~~l  281 (440)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|...|+.-....
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vF   44 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVF   44 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            499999999999999999 5799999999999999987655443

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.02  E-value=0.36  Score=34.28  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=35.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHhcCCccccccc
Q 044021          187 QWTPQEDRMLIRLVAQHGTKKWSVIAKAMTGRVGKQCRE  225 (440)
Q Consensus       187 ~WT~EED~~Ll~lV~k~G~~nW~~IA~~lpgRt~~QCr~  225 (440)
                      .|+..|=..++++.++||..+-..||..|.|++...++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHH
Confidence            499999999999999999989999999999999888654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.35  E-value=0.65  Score=38.58  Aligned_cols=49  Identities=22%  Similarity=0.346  Sum_probs=37.9

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCC---hHHHHHHh------------cCCccccccchhcc
Q 044021          181 NNIIKGQWTPQEDRMLIRLVAQHGTKK---WSVIAKAM------------TGRVGKQCRERWYN  229 (440)
Q Consensus       181 p~ikKG~WT~EED~~Ll~lV~k~G~~n---W~~IA~~l------------pgRt~~QCr~Rw~~  229 (440)
                      +..++..+|.|||.-|+-.+.+||-++   |..|-..+            ..||+..+..|-..
T Consensus        45 ~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~t  108 (128)
T d1ofcx2          45 GNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNT  108 (128)
T ss_dssp             TTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHH
T ss_pred             cccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHH
Confidence            344555799999999999999999998   99987654            34777777666643